Query psy286
Match_columns 284
No_of_seqs 120 out of 474
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 18:43:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy286.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/286hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cupa3 g.39.1.3 (A:8-34) Four 15.8 15 0.0011 21.9 0.0 6 4-9 18-23 (27)
2 d1iica1 d.108.1.2 (A:34-218) N 9.9 57 0.0042 26.1 1.8 33 53-87 112-144 (185)
3 d1d3bb_ b.38.1.1 (B:) B core S 7.3 44 0.0032 22.8 0.0 16 176-192 23-38 (81)
4 d1otga_ d.80.1.2 (A:) 5-carbox 6.6 1.1E+02 0.008 22.4 2.1 40 113-152 44-83 (125)
5 d1rxta1 d.108.1.2 (A:78-218) N 6.0 80 0.0059 24.5 1.0 21 54-74 69-89 (141)
6 d1wzla1 b.1.18.2 (A:1-120) Mal 5.1 87 0.0063 22.7 0.6 13 125-137 18-30 (120)
7 d1lara2 c.45.1.2 (A:1628-1876) 5.1 68 0.005 25.0 -0.0 31 3-40 13-43 (249)
8 d1jzua_ b.60.1.1 (A:) Lipocali 4.4 65 0.0047 22.3 -0.6 40 72-111 89-134 (157)
9 d1yifa1 b.29.1.23 (A:325-533) 4.0 1.3E+02 0.0095 22.3 0.9 16 212-228 8-23 (209)
10 d2isba1 c.8.9.1 (A:2-179) Fuma 3.7 1E+02 0.0074 24.7 0.0 22 170-191 157-178 (178)
No 1
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.81 E-value=15 Score=21.93 Aligned_cols=6 Identities=67% Similarity=1.708 Sum_probs=5.2
Q ss_pred CCcccc
Q psy286 4 KNRYWS 9 (284)
Q Consensus 4 ~~~~~~ 9 (284)
|||||-
T Consensus 18 knr~wh 23 (27)
T d2cupa3 18 KNRFWH 23 (27)
T ss_dssp TTEEEE
T ss_pred cccccc
Confidence 899995
No 2
>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.87 E-value=57 Score=26.12 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=22.8
Q ss_pred eeeEeeecccccccceeeeeecccceEEEecccee
Q psy286 53 GVGVISARPVHHRYWSTELTMDHGAYTMLWSHRTV 87 (284)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (284)
=||.||++|++=|.-..++.|-. -..|=-|...
T Consensus 112 Lvg~Is~~P~~i~i~~~~~~~~~--VnFLCVhkk~ 144 (185)
T d1iica1 112 LVAFISAIPVTLGVRGKQVPSVE--INFLCVHKQL 144 (185)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEE--EEEEEECGGG
T ss_pred EEEEEeeeEEEEEEcCeEEEEEE--EEEEEEchhH
Confidence 38999999999988877765532 2345555543
No 3
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.25 E-value=44 Score=22.78 Aligned_cols=16 Identities=6% Similarity=-0.079 Sum_probs=12.5
Q ss_pred CCcceeccCCCCeeeEc
Q psy286 176 CSLPQLSSSSGNKYYEN 192 (284)
Q Consensus 176 g~l~VGeDefGNKYYE~ 192 (284)
|.| +|+|+++|-=-++
T Consensus 23 G~L-~~~D~~~NlvL~~ 38 (81)
T d1d3bb_ 23 GTF-KAFDKHMNLILCD 38 (81)
T ss_dssp EEE-EECCTTCCEEEEE
T ss_pred EEE-EEECCccCEEEcC
Confidence 565 7899999976664
No 4
>d1otga_ d.80.1.2 (A:) 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) {Escherichia coli [TaxId: 562]}
Probab=6.58 E-value=1.1e+02 Score=22.44 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=31.5
Q ss_pred cccCCcccccCCCccCeeeEeeeccchhHHHhhhhhhhhc
Q psy286 113 QRVGKPQVKDCPNSEDILHLRYRWCSLEEEAQKKDICKSS 152 (284)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~ 152 (284)
.+.-.=+|-|++.....+|+.+|-.+--..+|++.+++..
T Consensus 44 ~~~~~~~vadg~~~~~Fvhv~l~il~GRs~e~k~~l~~~l 83 (125)
T d1otga_ 44 HWVDTWQMADGQHDYAFVHMTLKIGAGRSLESRQQAGEML 83 (125)
T ss_dssp EEESSEEETTSCSCEEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEcceEEECCCCCCCeEEEEEeeecCCCCHHHHHHHHHHH
Confidence 3444446778888888999999999999999999766543
No 5
>d1rxta1 d.108.1.2 (A:78-218) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.02 E-value=80 Score=24.47 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=17.6
Q ss_pred eeEeeecccccccceeeeeec
Q psy286 54 VGVISARPVHHRYWSTELTMD 74 (284)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~ 74 (284)
||.||++|++=|.-..++.|-
T Consensus 69 VgfIs~~P~~i~i~~~~~~~~ 89 (141)
T d1rxta1 69 VGFISAIPANIHIYDTEKKMV 89 (141)
T ss_dssp EEEECCEECCCCCSSSCCCCE
T ss_pred EEEEeceEEEEEEeCCEeEEE
Confidence 899999999999887776553
No 6
>d1wzla1 b.1.18.2 (A:1-120) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}
Probab=5.11 E-value=87 Score=22.69 Aligned_cols=13 Identities=38% Similarity=0.271 Sum_probs=10.9
Q ss_pred CccCeeeEeeecc
Q psy286 125 NSEDILHLRYRWC 137 (284)
Q Consensus 125 ~~~~~~~~~~~~~ 137 (284)
.++|.||||+|+.
T Consensus 18 ~~~~~l~IRLRT~ 30 (120)
T d1wzla1 18 ISETQLRVRLRAK 30 (120)
T ss_dssp EETTEEEEEEEEE
T ss_pred cCCCEEEEEEEec
Confidence 4689999999985
No 7
>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.09 E-value=68 Score=25.00 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=18.3
Q ss_pred CCCccccccCCCCcCccceeehhhhccccccccccccC
Q psy286 3 GKNRYWSTVPRSLPWSHRTVTAKVLSSRKRREKDDRIG 40 (284)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (284)
-|||| +.-+||.|--|. |++.+..+.+|=|-
T Consensus 13 ~kNR~----~~i~p~d~sRV~---L~~~~~~~~~dYIn 43 (249)
T d1lara2 13 FKNRL----VNIMPYELTRVC---LQPIRGVEGSDYIN 43 (249)
T ss_dssp GGCSS----TTCCCCTTTBCC---CCCBTTBTTTTCCS
T ss_pred ccCCC----CCCCCCcCcEEE---ccCCCCCCCCCeEE
Confidence 37887 446889887664 44444444455443
No 8
>d1jzua_ b.60.1.1 (A:) Lipocalin q83 {Common quail (Coturnix coturnix) [TaxId: 9091]}
Probab=4.43 E-value=65 Score=22.32 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=25.3
Q ss_pred eecccceEEEeccce------ehhhhhhhhhhcccccccccccccc
Q psy286 72 TMDHGAYTMLWSHRT------VTAKVLSRKRREKDDRIGDFFSREK 111 (284)
Q Consensus 72 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (284)
-.|...|.++++... ..+.+|||.+.-.++-+..|-..-+
T Consensus 89 ~tdy~~y~i~y~~~~~~~~~~~~~~llsR~~~l~~~~~~~f~~~~~ 134 (157)
T d1jzua_ 89 DTDYKSYAVIYATRVKDGRTLHMMRLYSRSPEVSPAATAIFRKLAG 134 (157)
T ss_dssp EETTTTEEEEEEEEEETTEEEEEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEEEeeecCCceEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 356666777665433 3477888888777776666655443
No 9
>d1yifa1 b.29.1.23 (A:325-533) Beta-D-xylosidase C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=4.03 E-value=1.3e+02 Score=22.33 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=12.9
Q ss_pred CcCCCCCCchhhhhhcc
Q psy286 212 NYDGSMVPAEWYGWLHY 228 (284)
Q Consensus 212 dyDaSqIPPEWH~WLHh 228 (284)
+|+.++++++|. |+|.
T Consensus 8 dF~~~~L~~~W~-~~r~ 23 (209)
T d1yifa1 8 EFEDSTLNINFQ-TLRI 23 (209)
T ss_dssp CCCSSSCCTTCB-EESS
T ss_pred cCCCCCCCCccE-EECc
Confidence 588899999997 5664
No 10
>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.75 E-value=1e+02 Score=24.72 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=15.6
Q ss_pred eeeecCCCcceeccCCCCeeeE
Q psy286 170 LWVIRPCSLPQLSSSSGNKYYE 191 (284)
Q Consensus 170 ~~~~R~g~l~VGeDefGNKYYE 191 (284)
+.+..|+-++|..|..||..|.
T Consensus 157 leVedFgP~iV~iD~~Gn~lyk 178 (178)
T d2isba1 157 LEVERFGPCIVAIDAHGNSLYR 178 (178)
T ss_dssp EEEEEEEEEEEEECTTSCBTTC
T ss_pred EEEeeccceEEEEECCCCcccC
Confidence 3444454456999999998873
Done!