RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy286
(284 letters)
>gnl|CDD|218414 pfam05071, NDUFA12, NADH ubiquinone oxidoreductase subunit NDUFA12.
This family contains the 17.2 kD subunit of complex I
(NDUFA12) and its homologues. The family also contains a
second related eukaryotic protein of unknown function, .
Length = 100
Score = 111 bits (279), Expect = 5e-31
Identities = 40/96 (41%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKW 245
GNKYYEN GR RWVIYN + S VP EW+GWLH+ TD P E+P W
Sbjct: 10 GNKYYENKDELGGRRRWVIYNGKA----EASRVPPEWHGWLHHTTDEPPTEEP-LKPRAW 64
Query: 246 MAEHTQNMSGSNKEYVPYST------TRDKIQAWTP 275
H N++G+ Y PY + +AWTP
Sbjct: 65 EKPHQPNLTGTPGAYRPYGSLLRRPRATGDYEAWTP 100
>gnl|CDD|236176 PRK08183, PRK08183, NADH dehydrogenase; Validated.
Length = 133
Score = 70.4 bits (173), Expect = 4e-15
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 186 GNKYYEN--PRYFFGRN-RWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPV 242
GN YY + GR RWVIYN + S +P EW+GWLH+ D P ++P P
Sbjct: 35 GNVYYRTKGGKPSDGRERRWVIYNGYA----EASRIPPEWHGWLHHTVDVPPTKEPYPP- 89
Query: 243 YKWMAEHTQNMSGSNKEYVP-----YSTTRDKI----QAWTP 275
+W H N++G+ Y P R + AWTP
Sbjct: 90 REWEKPHQPNLTGTPLAYRPKGSILRGGERPRATGDYDAWTP 131
>gnl|CDD|215571 PLN03095, PLN03095, NADH:ubiquinone oxidoreductase 18 kDa subunit;
Provisional.
Length = 115
Score = 66.4 bits (162), Expect = 7e-14
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 186 GNKYYENPRYFFGRNRWVIY-NPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYK 244
GNKYYENP Y GR+RWV Y + D +Y+ S +P EW+GWLHY D E R +
Sbjct: 19 GNKYYENPSYQSGRHRWVEYADKD---DYNASNIPPEWHGWLHYVNDEPG-ELEDRTAPR 74
Query: 245 WMAEHTQNMS--GSNKEYVPYST-----TRD--KIQAWTPP 276
+ E + G+ Y P R+ + W+PP
Sbjct: 75 YQLEFIAGGTTTGTQYMYHPKGHFLSKRPRNWKRYTPWSPP 115
>gnl|CDD|215389 PLN02732, PLN02732, Probable NADH dehydrogenase [ubiquinone] 1
alpha subcomplex subunit.
Length = 159
Score = 66.1 bits (161), Expect = 2e-13
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 186 GNKYYEN-PRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYK 244
GNKYY+ +GR+RWV Y Y+ S VPAEW+GWLH+ TD+T E +
Sbjct: 58 GNKYYQKLGDTQYGRHRWVEYAEKS--RYNASQVPAEWHGWLHFITDHTGDELLMLKPKR 115
Query: 245 WMAEHTQNMSGSNKEYVPYST-------TRD--KIQAWTP 275
+ EH +N SG +EY+ +S +D + Q+W P
Sbjct: 116 YGLEHKENFSGEGEEYIYHSKGHTLNPGQKDWTRYQSWQP 155
>gnl|CDD|226284 COG3761, COG3761, NADH:ubiquinone oxidoreductase 17.2 kD subunit
[Energy production and conversion].
Length = 118
Score = 55.7 bits (134), Expect = 5e-10
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 186 GNKYYE--NPRYFFGRNRWVIYNPDVGLNY-DGSMVPAEWYGWLHYKTDYTPCEDPGRPV 242
GN YYE N RWVIYN Y + S +P W+GWLH++ D P + P
Sbjct: 22 GNVYYEGRNIDSEGRTRRWVIYN-----GYAEASKIPPGWHGWLHHRVDEPPKSEQLFP- 75
Query: 243 YKWMAEHTQNMSGSNKEYVPYS---------TTRDKIQAWTP 275
+W H N++G+ Y P AWTP
Sbjct: 76 REWQKPHLPNLTGTPHAYRPKGSLARAGERPRVTGDYDAWTP 117
>gnl|CDD|168631 PRK06630, PRK06630, hypothetical protein; Provisional.
Length = 99
Score = 28.4 bits (63), Expect = 1.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 187 NKYYE--NPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTP 234
N+YYE N Y R+VIY +N + + +P W+ WLH+ + P
Sbjct: 23 NQYYESRNIDYLGRPRRFVIYK---NVN-EPTKIPPSWHAWLHHLVNEIP 68
>gnl|CDD|223512 COG0435, ECM4, Predicted glutathione S-transferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 324
Score = 29.2 bits (66), Expect = 2.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 4 KNRYWSTVPRSLPWSHRTVTAKVL 27
K RY V + PW+HRT+ + L
Sbjct: 49 KGRYHLYVSLACPWAHRTLIFRAL 72
>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase;
Provisional.
Length = 148
Score = 27.9 bits (63), Expect = 3.7
Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 3/22 (13%)
Query: 131 HLRYRWCSLEEEAQKKDICKSS 152
HL Y+W E A KS
Sbjct: 115 HLAYQWLDAREAAAL---TKSW 133
>gnl|CDD|162081 TIGR00874, talAB, transaldolase. This family includes the majority
of known and predicted transaldolase sequences,
including E. coli TalA and TalB. It excluded two other
families. The first includes E. coli transaldolase-like
protein TalC. The second family includes the putative
transaldolases of Helicobacter pylori and Mycobacterium
tuberculosis [Energy metabolism, Pentose phosphate
pathway].
Length = 317
Score = 28.2 bits (63), Expect = 4.5
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 16/64 (25%)
Query: 207 PDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPG----RPVYKWMAEH---TQNMSGS--N 257
P VG D WY K +Y+ EDPG + +Y + +H T+ M S N
Sbjct: 175 PFVGRILD-------WYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRN 227
Query: 258 KEYV 261
KE +
Sbjct: 228 KEEI 231
>gnl|CDD|234415 TIGR03955, rSAM_HydG, [FeFe] hydrogenase H-cluster radical SAM
maturase HydG. This model describes the radical SAM
protein HydG. It is part of an enzyme metallocenter
maturation system, working together with GTP-binding
protein HydF and another radical SAM enzyme, HydE, in
H-cluster maturation in [FeFe] hydrogenases [Protein
fate, Protein modification and repair].
Length = 471
Score = 28.1 bits (63), Expect = 6.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 41 ESQPVRERTLKVGVGVIS 58
ESQ VRER L +G+ IS
Sbjct: 320 ESQKVRERVLHLGISQIS 337
>gnl|CDD|232904 TIGR00280, L37a, ribosomal protein L37a. This model finds
eukaryotic ribosomal protein L37a and its archaeal
orthologs. The nomeclature is tricky because eukaryotes
have proteins called both L37 and L37a [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 92
Score = 26.0 bits (57), Expect = 8.1
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 130 LHLRYRWCSLEEEAQKKDICKSSKRGAPKSAGPVAVCHSALWVIRPC 176
L LR + +E + + K +C + K + +W R C
Sbjct: 20 LKLRRQVKKIEIQQKAKYVCPFCGKKTVKRGS------TGIWTCRKC 60
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase
inhibitor.
Length = 553
Score = 27.9 bits (62), Expect = 8.4
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 147 DICKSSKRGA---PKSAGPVAVCHSALWVIRPCSLPQ--------LSSSSGNK 188
D C SS A P P+ + SA+ V R +L L SS+GN
Sbjct: 58 DTCVSSLSNAGRVPPDPKPIQIIQSAISVSRE-NLKTAQSMVKSILDSSAGNV 109
>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit. G proteins couple
receptors of extracellular signals to intracellular
signaling pathways. The G protein alpha subunit binds
guanyl nucleotide and is a weak GTPase. A set of
residues that are unique to G-alpha as compared to its
ancestor the Arf-like family form a ring of residues
centered on the nucleotide binding site. A Ggamma is
found fused to an inactive Galpha in the Dictyostelium
protein gbqA.
Length = 329
Score = 27.6 bits (62), Expect = 8.6
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 81 LWSHRTVTAKVLSRKRREK-DDRIGDFFSREKGQRVGKPQVKDCPNSEDILHLRYR 135
LW+ + +V +R + D F R+ P P +DIL R +
Sbjct: 104 LWNDPGI-QEVYNRSNEFQLSDSAKYFLDNLD--RIASPDYV--PTDQDILRARVK 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.431
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,440,881
Number of extensions: 1308715
Number of successful extensions: 860
Number of sequences better than 10.0: 1
Number of HSP's gapped: 849
Number of HSP's successfully gapped: 17
Length of query: 284
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 188
Effective length of database: 6,679,618
Effective search space: 1255768184
Effective search space used: 1255768184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)