RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy286
(284 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 7e-04
Identities = 35/197 (17%), Positives = 60/197 (30%), Gaps = 53/197 (26%)
Query: 7 YWSTVPRSLP------WSHRTVTAKVLSSRKRREKDDRIGESQPVRERTLKVGVGVISAR 60
Y ++P S P +H VTAK+L GE + + G+++A
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTP--------GELRSYLKGATGHSQGLVTAV 281
Query: 61 PV-HHRYWSTELTMDHGAYTML-W----SHRTVTAKVLSRKRREKDDRIGDFFSREKGQR 114
+ W + A T+L + + L E S E +
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED--------SLENNE- 332
Query: 115 VGKP----QVKDCPNSEDILHLRYRWCSLEEEAQKKDICKSSKRGAPKS---AGPVAVCH 167
G P + + + ++ L Q + S G K+ +GP
Sbjct: 333 -GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ---VEISLVNG-AKNLVVSGP----- 382
Query: 168 SALWVIRPCSLPQLSSS 184
P SL L+ +
Sbjct: 383 -------PQSLYGLNLT 392
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 25/208 (12%), Positives = 52/208 (25%), Gaps = 76/208 (36%)
Query: 63 HHRYWSTELT-MDHGAYTMLWSHRTVTAKVLSRKRREKDDRIGDFFSREKGQRVGKPQVK 121
HH + E + Y + S +D + +F
Sbjct: 3 HHHHMDFETGEHQYQ-YKDILSVF-------------EDAFVDNF--------------- 33
Query: 122 DCPNSEDILHLRYRWCSLEEEAQKKDICKSSKRGAPKSAGPVAVCHSALWVIRPCSLPQL 181
DC + +D+ S+ + + I S V+ W +
Sbjct: 34 DCKDVQDMPK------SILSKEEIDHIIMSKDA--------VSGTLRLFWTLL------- 72
Query: 182 SSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRP 241
S + + F L + Y +L T P
Sbjct: 73 --SKQEEMVQ---KFVEE----------VLRIN--------YKFL-MSPIKTEQRQPSMM 108
Query: 242 VYKWMAEHTQNMSGSNKEYVPYSTTRDK 269
++ + + N+ + Y+ +R +
Sbjct: 109 TRMYIEQR-DRLYNDNQVFAKYNVSRLQ 135
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 34.3 bits (78), Expect = 0.041
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 5/80 (6%)
Query: 63 HHRYWSTELTMDHG-AYTMLWSHRTVTAKVLSRKRREKDDRIGDFFSREKGQRVGKPQVK 121
R LT D LW + + D E +R+
Sbjct: 94 GGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLM--ENLKRLSDINYI 151
Query: 122 DCPNSEDILHLRYRWCSLEE 141
P ED+L+ R R + E
Sbjct: 152 --PTKEDVLYARVRTTGVVE 169
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.068
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 140 EEEAQKKDICKSS-KRGAPKSAGPVAV 165
E++A KK ++S K A SA +A+
Sbjct: 18 EKQALKK--LQASLKLYADDSAPALAI 42
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE;
1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Length = 346
Score = 28.4 bits (64), Expect = 2.4
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 36 DDRIGESQPVRERTLKVGV-GVISARPVHHRYWSTELTMDHGAYTMLWSHRTVTAKVLSR 94
D ++ + VR T GVI H + + + V + R
Sbjct: 92 DPKVVYASKVRIYTKNGIERGVIGMLAPHLQ------DSESRKKVPTYDEIFVDLSLCER 145
Query: 95 KRREKDDRIGDFFSREKGQRV 115
R D + D + E +V
Sbjct: 146 GVRVGDIAVIDQTAFETNGKV 166
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 28.1 bits (62), Expect = 3.3
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 14/74 (18%)
Query: 198 GRNRWVIYNPDVGLNYDGSMVPAEWYG----WLHYKTDYTPCEDPGRPVYKWMAEHTQNM 253
G W I LN+DG+++ A H++ RP +
Sbjct: 143 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFR----------RPDVSVQGDEVTLY 192
Query: 254 SGSNKEYVPYSTTR 267
+ ++ VP S
Sbjct: 193 TPEERDPVPLSIHH 206
>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h
Length = 130
Score = 26.7 bits (60), Expect = 5.2
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 101 DRIGDFFSREK-GQRVGKPQVKDCPNS 126
+ D + ++ GK QV P+S
Sbjct: 5 SVLADALNAINNAEKTGKRQVLIRPSS 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.431
Gapped
Lambda K H
0.267 0.0834 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,493,799
Number of extensions: 256253
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 21
Length of query: 284
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 191
Effective length of database: 4,105,140
Effective search space: 784081740
Effective search space used: 784081740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.5 bits)