RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy286
         (284 letters)



>d1ng0a_ b.121.4.7 (A:) Sobemovirus coat protein {Cocksfoot mottle
           virus [TaxId: 40979]}
          Length = 192

 Score = 26.4 bits (58), Expect = 3.2
 Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 13/55 (23%)

Query: 168 SALWVIRPCSLPQLSSSSGNKYYENPRYFFGRNRW----VIYNPDVGLNYDGSMV 218
           S ++++ P +L ++ + +           +   R     ++Y P      DGS+ 
Sbjct: 24  SQVFIVSPAALDRVGTIAKA---------YALWRPKHWEIVYLPRCSTQTDGSIE 69


>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 177

 Score = 25.9 bits (57), Expect = 4.4
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLN-YDG 215
            ++ YE+P  F  +N++ I   D  L  YD 
Sbjct: 109 THRPYESPLQFKQKNQFFIDKSDGLLLLYDP 139


>d1qlpa_ e.1.1.1 (A:) Antitrypsin, alpha-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 372

 Score = 26.0 bits (56), Expect = 6.7
 Identities = 4/33 (12%), Positives = 14/33 (42%)

Query: 221 EWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNM 253
           + Y    +  ++   E+  + +  ++ + TQ  
Sbjct: 114 KLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGK 146


>d2enda_ a.18.1.1 (A:) T4 endonuclease V {Bacteriophage T4 [TaxId:
           10665]}
          Length = 137

 Score = 24.8 bits (54), Expect = 7.9
 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 6/33 (18%)

Query: 205 YNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCED 237
           +N       D S +P E+ G      DY P E 
Sbjct: 82  FNIKDTTVQDISDIPQEFRG------DYIPHEA 108


>d1t6la2 d.131.1.2 (A:136-270) UL44 {Human cytomegalovirus, HHV-5
           [TaxId: 10359]}
          Length = 135

 Score = 24.9 bits (54), Expect = 8.5
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 242 VYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPS 277
           + KW+  HT+      K   P  T +  + A  PP+
Sbjct: 21  LLKWIGPHTRVKRNVKKAPCPTGTVQILVHA-GPPA 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.431 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,143,577
Number of extensions: 53280
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 8
Length of query: 284
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,254,276
Effective search space: 250855200
Effective search space used: 250855200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)