Query psy2861
Match_columns 1140
No_of_seqs 440 out of 894
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 18:46:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4575|consensus 100.0 2.2E-39 4.8E-44 370.6 9.4 456 312-910 317-848 (874)
2 COG5279 CYK3 Uncharacterized p 100.0 9.4E-32 2E-36 307.0 11.7 219 394-696 148-367 (521)
3 PF01841 Transglut_core: Trans 99.7 1.8E-17 3.8E-22 156.1 0.9 111 396-560 2-113 (113)
4 smart00460 TGc Transglutaminas 99.5 2.2E-14 4.8E-19 124.6 8.9 68 493-562 1-68 (68)
5 KOG4575|consensus 99.4 2.4E-14 5.2E-19 166.5 2.8 245 48-294 321-750 (874)
6 COG5279 CYK3 Uncharacterized p 99.4 8.7E-14 1.9E-18 160.8 4.6 125 1003-1132 203-345 (521)
7 COG1305 Transglutaminase-like 99.3 3.8E-12 8.3E-17 138.0 9.3 119 392-564 142-262 (319)
8 PF04473 DUF553: Transglutamin 99.1 1.8E-10 3.9E-15 117.8 9.9 127 393-562 2-128 (153)
9 PLN03076 ARF guanine nucleotid 98.4 3.7E-08 8E-13 130.2 0.3 84 22-114 1648-1753(1780)
10 smart00460 TGc Transglutaminas 97.4 5.5E-05 1.2E-09 65.8 0.8 62 1004-1067 1-68 (68)
11 PF01841 Transglut_core: Trans 96.9 9.1E-05 2E-09 70.0 -2.4 63 1001-1065 43-113 (113)
12 KOG0909|consensus 96.8 0.00039 8.4E-09 80.8 0.9 61 488-564 210-272 (500)
13 PF14381 EDR1: Ethylene-respon 96.4 0.0066 1.4E-07 65.7 7.0 61 497-567 141-202 (204)
14 PF04473 DUF553: Transglutamin 96.0 0.0022 4.7E-08 66.5 0.7 62 998-1065 64-126 (153)
15 PF00797 Acetyltransf_2: N-ace 95.3 0.066 1.4E-06 58.1 8.9 68 495-566 43-110 (240)
16 COG1305 Transglutaminase-like 94.9 0.0087 1.9E-07 65.4 0.8 73 1000-1074 185-267 (319)
17 PF13369 Transglut_core2: Tran 92.7 0.59 1.3E-05 48.1 9.0 56 492-565 58-113 (152)
18 PRK15047 N-hydroxyarylamine O- 91.4 0.87 1.9E-05 51.7 9.3 66 495-565 63-128 (281)
19 PF14381 EDR1: Ethylene-respon 88.7 0.18 3.9E-06 54.8 1.1 59 1000-1065 133-195 (204)
20 PF14402 7TM_transglut: 7 tran 84.0 1.1 2.4E-05 51.4 4.1 51 507-564 2-52 (313)
21 PF06035 Peptidase_C93: Bacter 83.4 1.9 4E-05 46.0 5.3 56 496-561 75-131 (170)
22 PF13471 Transglut_core3: Tran 80.9 3.7 8E-05 40.3 6.0 47 498-555 55-101 (117)
23 KOG0929|consensus 70.8 1.8 3.9E-05 58.2 1.1 63 22-107 1428-1492(1514)
24 PRK10941 hypothetical protein; 62.6 21 0.00047 40.6 7.4 54 492-563 89-143 (269)
25 KOG2422|consensus 60.2 2.5 5.5E-05 52.0 -0.5 26 160-185 81-106 (665)
26 COG2162 NhoA Arylamine N-acety 54.0 44 0.00096 38.3 7.8 70 493-568 62-133 (275)
27 KOG2422|consensus 50.5 4 8.7E-05 50.4 -0.9 27 160-186 84-110 (665)
28 PF10278 Med19: Mediator of RN 47.2 11 0.00023 40.7 1.7 8 186-193 168-175 (178)
29 PF11033 ComJ: Competence prot 43.7 1E+02 0.0023 31.7 7.9 85 787-880 22-110 (125)
30 PF13369 Transglut_core2: Tran 43.5 6.2 0.00013 40.7 -0.7 90 1000-1107 55-147 (152)
31 COG3672 Predicted transglutami 40.6 66 0.0014 35.2 6.3 53 496-559 105-159 (191)
32 COG3012 Uncharacterized protei 39.3 18 0.0004 37.8 1.9 16 548-563 115-130 (151)
33 PF15644 Tox-PL: Papain fold t 36.6 63 0.0014 31.7 5.1 53 498-561 54-106 (111)
34 PF10500 SR-25: Nuclear RNA-sp 33.7 26 0.00057 38.9 2.1 15 282-296 155-169 (225)
35 KOG3794|consensus 33.7 26 0.00057 41.7 2.2 8 69-76 90-97 (453)
36 PF15645 Tox-PLDMTX: Dermonecr 27.8 2.5E+02 0.0053 29.4 7.8 58 499-563 5-64 (135)
37 PF07495 Y_Y_Y: Y_Y_Y domain; 26.4 3.7E+02 0.008 23.2 7.7 30 719-748 21-50 (66)
38 KOG2775|consensus 25.0 30 0.00065 40.2 0.7 16 547-562 230-245 (397)
39 TIGR00869 sec62 protein transl 24.4 40 0.00086 37.9 1.5 6 120-125 148-153 (232)
40 PRK13211 N-acetylglucosamine-b 22.1 2.6E+02 0.0057 34.7 7.9 68 809-880 322-392 (478)
41 TIGR00869 sec62 protein transl 21.9 36 0.00078 38.2 0.6 12 132-143 190-201 (232)
42 PF10278 Med19: Mediator of RN 21.2 44 0.00095 36.2 1.1 10 161-170 138-147 (178)
43 KOG4043|consensus 21.1 42 0.0009 35.8 0.8 11 160-170 171-181 (214)
44 PF03839 Sec62: Translocation 20.7 35 0.00076 38.1 0.2 12 136-147 173-184 (224)
45 KOG2812|consensus 20.4 55 0.0012 38.7 1.7 11 109-119 153-163 (426)
46 KOG2775|consensus 20.3 35 0.00076 39.6 0.1 16 644-659 328-343 (397)
No 1
>KOG4575|consensus
Probab=100.00 E-value=2.2e-39 Score=370.62 Aligned_cols=456 Identities=32% Similarity=0.496 Sum_probs=338.3
Q ss_pred ccccccceeEEEEEEecCcceeeeecccCCCCcccc-----ccccccCC---cce-------eeeeec-ccceee-----
Q psy2861 312 TSDIEKARTLFRWITVKNLNTMSFDDNMAGDTPMGL-----LRGIKHGT---ESY-------HVLFKR-LCSLVR----- 370 (1140)
Q Consensus 312 ~~d~ek~~~iy~w~~~~~~~~~~~~~~~~~~~p~~~-----l~~i~~g~---~~y-------~vl~~~-~~s~~r----- 370 (1140)
.+..+|-..||+|++.++++++.|++.+..++|.++ ++.+.-+. ..| |+++.. +|++.+
T Consensus 317 pqtterps~i~r~i~i~~~nt~if~~si~~~Spk~~PsLqp~~~i~y~ahnve~~gvrpaspH~l~~rkl~~Y~kaefaa 396 (874)
T KOG4575|consen 317 PQTTERPSAIYRWITIKNLNTMIFDDSIQNDSPKGLPSLQPLRGIKYGAHNVESYGVRPASPHVLFKRKLCSYAKAEFAA 396 (874)
T ss_pred ccccCCchhheeeeecccchhhhhhhhhhcCCCcCCCCCCCCCCccCCCCccccccccccCchhhhheehhhcccchhhh
Confidence 456677779999999999999999999999999987 44444332 234 556554 555333
Q ss_pred ----------------eccc------------cccccchhhhcccccc-------------chhHHHHHHHHhcCCCCCh
Q psy2861 371 ----------------YYGG------------CSIDIEKPAIYVAQED-------------QHTFTDLVRQLAGRHATSD 409 (1140)
Q Consensus 371 ----------------yy~~------------~~s~ID~~A~~~~~~~-------------~~s~~~La~~L~~~~~~tD 409 (1140)
-|.+ ..-+||.+-.++.+.+ ..++.-++.....++..|-
T Consensus 397 kreEifnkLslhvy~~v~~g~~ci~v~gd~~Pgq~sv~~~~~Nmnfsa~~tw~r~i~dgrvqvSw~~~q~n~~Ar~~~ta 476 (874)
T KOG4575|consen 397 KREEIFNKLSLHVYCVVIKGFSCIKVAGDYQPGQYSVDDHRFNMNFSARNTWNRVILDGRVQVSWRFVQCNWGARHLVTA 476 (874)
T ss_pred hhHHhhccccccchhhhhcccchhhhccCCCceeEeccccccccchhhhhchheeeecCcccccHHHHhhccCcchhhhH
Confidence 0000 0011222222222221 2234334444444567788
Q ss_pred HHHHHHHHHhhccCCCcceEecCCCCCCCccccccccccccchhhhhhhhhccccccccccccccccccccccCCCCCCC
Q psy2861 410 IEKARTLFRWITVKNLNTMSFDDNMAGDTPMGLLRGIKHGTESYHVLFKRLCRGIIAGFYPLFTVKNLNTMSFDNMTGDT 489 (1140)
Q Consensus 410 ~EKvRAIy~WI~~kN~~nI~YD~~~~~~~p~~~l~~i~~~~~sy~~l~kr~~~~~~~G~~P~~~~~~~~~~~f~~~~~~~ 489 (1140)
+++.|+||.++.+ +.|..+.-++ +.++++
T Consensus 477 l~~~r~~~i~~~E-----~~~~tdd~~~----------------------------------------------~~e~rt 505 (874)
T KOG4575|consen 477 LDGSREAKIDGNE-----LRYETDDHYF----------------------------------------------MTESRT 505 (874)
T ss_pred hhhccceeeeeee-----eeEeeccccc----------------------------------------------cccccc
Confidence 8899999888886 4443321111 112223
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEECCeEEEEeeccCCCcccC
Q psy2861 490 PMGLPRGIKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGARHLVN 569 (1140)
Q Consensus 490 p~~vL~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LDG~WylVDaTWgag~l~n 569 (1140)
-++++-.+.+.-.+.|+|++.|+.++||.|++|.||+|.+...- ...+.||+|+.+.+|.+|+++|+..++ .+
T Consensus 506 se~~iyeg~~tP~e~awl~k~~~~sLdlwCEvi~gflK~P~~i~----~~fkyNh~w~~~~~d~e~r~iD~s~~~---s~ 578 (874)
T KOG4575|consen 506 SEEFIYEGEFTPSEHAWLLKPRPLSLDLWCEVILGFLKIPFVIS----LFFKYNHSWIDNKLDEETRYIDKSGAA---SI 578 (874)
T ss_pred hhhheeccccChhHHHHHhhhhhhhcchhHHHHHhhhcCcccee----eeeecchhhhhhhccceeEEEeecccc---cc
Confidence 35566677778889999999999999999999999999885431 224579999999999999999998754 23
Q ss_pred CcccCccCCCCCCcccccchhhhHHhhhccCCCCCCcccccCccccccCccccccccCCCCCCcccccCCCChhhhhhCC
Q psy2861 570 AKEVPKVGAKGKSDSLRHLDSAKQVLKVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPEWQLLKTSISLRDFEELP 649 (1140)
Q Consensus 570 ~~~~p~~~~~~ksd~~r~l~s~~q~~~~~~~~~~~s~~~~~ddfYFLt~P~efI~THfP~d~~wQLL~~Pis~~~Fe~lP 649 (1140)
+. ++.+ +| .++. ..+++|||+.|+|.|+||+|+++..||+.|.++....+.+|
T Consensus 579 pi-h~~~--~~-----------------------~s~~-~~~n~yFlm~P~E~i~Th~penp~~qfImpsv~~~~~~~LP 631 (874)
T KOG4575|consen 579 PI-HLPP--KG-----------------------DSLI-FHYNLYFLMSPEENIITHMPENPLKQFIMPSVTEDVCYLLP 631 (874)
T ss_pred cc-ccCc--CC-----------------------cchh-ccccceeecChhhheecCCCCchhhhhccccccchheeeee
Confidence 32 1111 11 1112 24578999999999999999999999999999999999999
Q ss_pred CCChHHHhcCCcCCCCCCceEEEecCCccEEEEEecCCCceeeEEEEEeeeeecCCCCccCcccceeeEEEEEeccEEEE
Q psy2861 650 FVRSLFFRYGLYFPDTNTKAVMYTDQTGAATVRIAMPVNMQSSLIFHYNLKLYDGDGDMLDGVSLKRFVMQSVVGNIVSF 729 (1140)
Q Consensus 650 ~v~p~FF~~gL~l~s~~t~li~~~d~~g~~~i~I~~P~dvE~~~~v~~~lk~~d~dGd~~e~vsLkr~v~Q~~~~~~~~f 729 (1140)
.+.|.||+++|+|.+++|.+.++.| .+..++++..|.|+|+++.|..- +
T Consensus 632 wVssvyF~n~Lkl~kFnt~v~fl~d-~evlq~~~laP~d~e~fA~vv~~-s----------------------------- 680 (874)
T KOG4575|consen 632 WVSSVYFENKLKLKKFNTVVTFLVD-AEVLQSTRLAPLDLEIFANVVSS-S----------------------------- 680 (874)
T ss_pred ccchhhhhcceeeeeecceeeeecc-chhhhhhccCcchhhheeeeccc-c-----------------------------
Confidence 9999999999999999999999885 89999999999999998876310 0
Q ss_pred EEEcCcCceEEEEEEEeccCCCccccCCCcccceeeeEEEEec-cccccccCCCCCCC-C-CcCCC----hhhhccCcee
Q psy2861 730 RVHAPAAAEFLLDVFANSVTPREYLTGEPMKFKSVCKFKIVCT-ELYTVMVPLPDCAS-G-EWGPT----KATRLFGLIP 802 (1140)
Q Consensus 730 ~V~~P~~G~y~L~IfA~~~~~~~~l~Ge~~~f~~Vc~Y~I~C~-~~~~~~~PfP~~~~-g-~wGPs----~~~~~~GLi~ 802 (1140)
+-.+|. |++ ++.+|+.||.|.++|+ ....+..++|.+.. | .|+|+ ..++.+|+-|
T Consensus 681 ---alAp~A--------------y~~-q~~k~t~v~kfk~~~d~r~~~IkavlP~n~~agvl~i~aGrlv~~t~~~~~hP 742 (874)
T KOG4575|consen 681 ---ALAPGA--------------YLT-QPIKFTSVCKFKVVCDERLQVIKAVLPENASAGVLWIPAGRLVKATRLFGLHP 742 (874)
T ss_pred ---cccccc--------------hhc-cchhhhhhhhhhhcCcceeeeeeccCCCccccceeEeecccccccceeccccc
Confidence 111222 333 4457999999999995 77788889999987 4 89999 7788999999
Q ss_pred cCCCCcEEEcCcEEEEEEeecCC-----cceeeeccccCCc--chhhcccceEEEEecCcEEEEEEECCCCceeeEEEEE
Q psy2861 803 ITHPEALIFAGKEMEIQFRMSKP-----LTDFMSTLHKNGA--DEKKLNKCVTHRILDQDIVSFIINFPEEGQYGFDVYT 875 (1140)
Q Consensus 803 vSH~eaII~t~G~~eI~F~lsrp-----L~~f~a~L~kdg~--~E~~L~r~V~~~v~d~~~Vtf~V~lPeaG~YgL~IYa 875 (1140)
+||+.|+|++|.-++|+|.+.+| ++++...++.++. .....+=+|.+..-++ .|.+.+.+|-.|.|+|.||+
T Consensus 743 ~sm~~p~~h~G~n~~~eFv~~~Pvphcp~~elyi~~pq~rtlhsg~ey~f~v~~~~~~~-~vyis~e~p~~~r~~laI~t 821 (874)
T KOG4575|consen 743 ISMPDPIIHTGRNVEIEFVMTRPVPHCPLSELYISLPQNRTLHSGREYQFCVRSALKGD-MVYISIEFPGEGRYGLAIYT 821 (874)
T ss_pred cccccceeecCcceEEEEEEccCCCCCcceeEEEecccccccccCceeeeeeeccccCC-eeEEeeccCCCCccceeeeC
Confidence 99999999999999999999998 6788998877653 3556666677777778 99999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCcccccccceeeeccc
Q psy2861 876 REISPDHRAGSPGSKSASGRKCLLTHCCKRLTEPW 910 (1140)
Q Consensus 876 Ke~~~~~~~~~~~~~~~~~ek~~~th~CkYlI~~~ 910 (1140)
.....++ -..++++..+|||+|.|+..
T Consensus 822 ptG~~~~--------L~~~r~~~~~~~~k~si~i~ 848 (874)
T KOG4575|consen 822 PTGQDDQ--------LINGRKQLLTHCCKYSIHIR 848 (874)
T ss_pred CCCchhh--------hhhcCCCCceEEEEEEEEec
Confidence 8554431 02356889999999999764
No 2
>COG5279 CYK3 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain [Cell division and chromosome partitioning]
Probab=99.97 E-value=9.4e-32 Score=306.97 Aligned_cols=219 Identities=25% Similarity=0.447 Sum_probs=173.4
Q ss_pred HHHHHHHHhcCCCCC-hHHHHHHHHHhhccCCCcceEecCCCCCCCccccccccccccchhhhhhhhhcccccccccccc
Q psy2861 394 FTDLVRQLAGRHATS-DIEKARTLFRWITVKNLNTMSFDDNMAGDTPMGLLRGIKHGTESYHVLFKRLCRGIIAGFYPLF 472 (1140)
Q Consensus 394 ~~~La~~L~~~~~~t-D~EKvRAIy~WI~~kN~~nI~YD~~~~~~~p~~~l~~i~~~~~sy~~l~kr~~~~~~~G~~P~~ 472 (1140)
...++.-+.. .++ .++|+++||+||+. |++|++.... .+.+++. .|..
T Consensus 148 ~k~la~~i~P--s~~~~~~k~~~iyd~Iv~----Nt~Y~~k~f~------s~~i~d~--~ytt----------------- 196 (521)
T COG5279 148 PKPLATIIRP--STAQLYPKPPVIYDWIVV----NTSYIDKMFE------SRNIQDP--RYTT----------------- 196 (521)
T ss_pred cccchhhcCC--chhhcccccchhheEEEe----cchhhhhhhe------eecCCcc--hhhh-----------------
Confidence 3335555543 455 99999999999996 6999976533 2233211 1111
Q ss_pred ccccccccccCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEEC
Q psy2861 473 TVKNLNTMSFDNMTGDTPMGLPRGIKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVA 552 (1140)
Q Consensus 473 ~~~~~~~~~f~~~~~~~p~~vL~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LD 552 (1140)
..++...++...++||.|||.||+.||+++||||++|.||+|++-+. ..+...|||||.|+||
T Consensus 197 -------------~l~~~r~~~I~heavCtgYa~lfK~lcn~lgIp~~iIegf~k~~~~~----~~~~~iNHaWN~VkiD 259 (521)
T COG5279 197 -------------VLAQMRSVLINHEAVCTGYAELFKELCNALGIPCEIIEGFLKSPIYY----TRDININHAWNIVKID 259 (521)
T ss_pred -------------hhhhhhhhhhhcccccchHHHHHHHHHHhcCCceEEEeecccccccc----cCCccccceeeEEEEC
Confidence 00112235677789999999999999999999999999999988332 1245789999999999
Q ss_pred CeEEEEeeccCCCcccCCcccCccCCCCCCcccccchhhhHHhhhccCCCCCCcccccCccccccCccccccccCCCCCC
Q psy2861 553 GAWRFVQCNWGARHLVNAKEVPKVGAKGKSDSLRHLDSAKQVLKVGAKGKSDSLRYEYDDHYFLTDPREFIYEFFPLQPE 632 (1140)
Q Consensus 553 G~WylVDaTWgag~l~n~~~~p~~~~~~ksd~~r~l~s~~q~~~~~~~~~~~s~~~~~ddfYFLt~P~efI~THfP~d~~ 632 (1140)
++||+||+|||+|...+... +. ...+++||++.|.++|.||+|..+.
T Consensus 260 ~~yy~VDtTwgdPI~~d~~~-----------------------------~~----~~~n~~YF~lap~qMi~tH~p~k~~ 306 (521)
T COG5279 260 NEYYLVDTTWGDPIHPDQNS-----------------------------KS----SKINHSYFLLAPNQMIATHVPEKDD 306 (521)
T ss_pred CeEEEEeeecCCCCcccccc-----------------------------cc----cccCchhccCChHHHhhhcCCCcch
Confidence 99999999999986533210 00 2457889999999999999999999
Q ss_pred cccccCCCChhhhhhCCCCChHHHhcCCcCCCCCCceEEEecCCccEEEEEecCCCceeeEEEE
Q psy2861 633 WQLLKTSISLRDFEELPFVRSLFFRYGLYFPDTNTKAVMYTDQTGAATVRIAMPVNMQSSLIFH 696 (1140)
Q Consensus 633 wQLL~~Pis~~~Fe~lP~v~p~FF~~gL~l~s~~t~li~~~d~~g~~~i~I~~P~dvE~~~~v~ 696 (1140)
||++.+|++...++.||.++|.||+.+|.|.+++++++.+.| .++|.+..|+|+|+++.+.
T Consensus 307 wq~~~~~~d~~~~~~lp~vt~~~f~~~l~l~~~~~~~~~~~~---~~ev~~~~~~dvev~a~~~ 367 (521)
T COG5279 307 WQFIKPDLDMPIVMALPWVSPVFFTLGLKLRKFNTSILHLND---LLEIELLAPNDVEVVASVD 367 (521)
T ss_pred hhccCCchhhhhhhhcccccchhhcccceeeeccccccccCc---ceeEEeecCCceEEEEeec
Confidence 999999999999999999999999999999999999998743 4999999999999988664
No 3
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=99.65 E-value=1.8e-17 Score=156.12 Aligned_cols=111 Identities=23% Similarity=0.434 Sum_probs=77.9
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhhccCCCcceEecCCCCCCCccccccccccccchhhhhhhhhccccccccccccccc
Q psy2861 396 DLVRQLAGRHATSDIEKARTLFRWITVKNLNTMSFDDNMAGDTPMGLLRGIKHGTESYHVLFKRLCRGIIAGFYPLFTVK 475 (1140)
Q Consensus 396 ~La~~L~~~~~~tD~EKvRAIy~WI~~kN~~nI~YD~~~~~~~p~~~l~~i~~~~~sy~~l~kr~~~~~~~G~~P~~~~~ 475 (1140)
+||++|+.+ .+++++|+++|+.||.+ ||.|+......
T Consensus 2 ~la~~i~~~-~~~~~~~~~~i~~~v~~----~~~y~~~~~~~-------------------------------------- 38 (113)
T PF01841_consen 2 ALAREITAN-SKTPLEKAKAIYDWVRS----NIRYDDPNYSP-------------------------------------- 38 (113)
T ss_dssp -------TT-SHCHHCCCCCCCCCCCC----CCCEC-TCCCC--------------------------------------
T ss_pred CcccccCCC-CCCHHHHHHHHHHHHHh----CcEEeCCCCCC--------------------------------------
Confidence 688999988 99999999999999996 69998211110
Q ss_pred cccccccCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEE-CCe
Q psy2861 476 NLNTMSFDNMTGDTPMGLPRGIKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYV-AGA 554 (1140)
Q Consensus 476 ~~~~~~f~~~~~~~p~~vL~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~L-DG~ 554 (1140)
...+|.++|++++|+|.+||.||.+|||++||||++|.|+.++...... ........|+|++|++ +|+
T Consensus 39 ----------~~~~~~~~l~~~~G~C~~~a~l~~allr~~Gipar~v~g~~~~~~~~~~-~~~~~~~~H~w~ev~~~~~~ 107 (113)
T PF01841_consen 39 ----------GPRDASEVLRSGRGDCEDYASLFVALLRALGIPARVVSGYVKGPDPDGD-YSVDGNDNHAWVEVYLPGGG 107 (113)
T ss_dssp ----------CCTTHHHHHHCEEESHHHHHHHHHHHHHHHT--EEEEEEEEEECSSTTC-TSTSSEEEEEEEEEEETTTE
T ss_pred ----------CCCCHHHHHHcCCCccHHHHHHHHHHHhhCCCceEEEEEEcCCcccccc-ccCCCCCCEEEEEEEEcCCc
Confidence 0112455678889999999999999999999999999999986532111 1112345899999999 899
Q ss_pred EEEEee
Q psy2861 555 WRFVQC 560 (1140)
Q Consensus 555 WylVDa 560 (1140)
|+.+||
T Consensus 108 W~~~Dp 113 (113)
T PF01841_consen 108 WIPLDP 113 (113)
T ss_dssp EEEEET
T ss_pred EEEcCC
Confidence 999996
No 4
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=99.54 E-value=2.2e-14 Score=124.58 Aligned_cols=68 Identities=24% Similarity=0.375 Sum_probs=58.5
Q ss_pred CCCCcccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEECCeEEEEeecc
Q psy2861 493 LPRGIKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNW 562 (1140)
Q Consensus 493 vL~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LDG~WylVDaTW 562 (1140)
+|+.|.|+|.+||.|+.+|||++||||++|.|+.++.+...+.. ....+|+|++|+++|+|+.+|+||
T Consensus 1 ~~~~~~G~C~~~a~l~~~llr~~GIpar~v~g~~~~~~~~~~~~--~~~~~H~W~ev~~~~~W~~~D~~~ 68 (68)
T smart00460 1 LLKTKYGTCGEFAALFVALLRSLGIPARVVSGYLKAPDTIGGLR--SIWEAHAWAEVYLEGGWVPVDPTP 68 (68)
T ss_pred CCcccceeeHHHHHHHHHHHHHCCCCeEEEeeeecCCCCCcccc--cCCCcEEEEEEEECCCeEEEeCCC
Confidence 46788999999999999999999999999999998776432221 235699999999999999999998
No 5
>KOG4575|consensus
Probab=99.45 E-value=2.4e-14 Score=166.52 Aligned_cols=245 Identities=36% Similarity=0.507 Sum_probs=173.2
Q ss_pred CcccccccccccccCCCccccCcCCCCccchh-----hccccccC---ccc-------HHHHHH-HHH----Hhhhccc-
Q psy2861 48 GIIGGFHPLFTVKNLNTMSFDDNITGDTPMGL-----LRGIKHGT---ESY-------HVLFKR-LCR----QFFEIVE- 106 (1140)
Q Consensus 48 ~Ii~gy~~l~~~~~~d~esq~rni~~w~Pv~I-----l~G~~~~~---~~~-------~~~F~~-~~~----~~Y~l~~- 106 (1140)
+=...-.++||.||++++.+.+.|..-+|... ++|+.+|+ |.. |.+|++ +|. .||--..
T Consensus 321 erps~i~r~i~i~~~nt~if~~si~~~Spk~~PsLqp~~~i~y~ahnve~~gvrpaspH~l~~rkl~~Y~kaefaakreE 400 (874)
T KOG4575|consen 321 ERPSAIYRWITIKNLNTMIFDDSIQNDSPKGLPSLQPLRGIKYGAHNVESYGVRPASPHVLFKRKLCSYAKAEFAAKREE 400 (874)
T ss_pred CCchhheeeeecccchhhhhhhhhhcCCCcCCCCCCCCCCccCCCCccccccccccCchhhhheehhhcccchhhhhhHH
Confidence 33445567899999999999999999999977 99999998 555 899998 553 2222111
Q ss_pred -cCCcccc--ccccccee--eeec-ccCC-CccCCCCc------cccccccc----ccceeecccccchhhhhHHHHhhh
Q psy2861 107 -TQPSLLE--NSIGTSYY--MYIG-LYPG-PSTYNDGK------YGHFALGN----TLGLIEGLTKNAETVCTLEKAKKK 169 (1140)
Q Consensus 107 -~~~~~l~--~~i~~~yy--~~~g-l~~~-~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 169 (1140)
|-+.-|+ +++-.++- +-.| .+|+ .+...+.+ .+-|+..- |+--|+..||||+++|.+.++++-
T Consensus 401 ifnkLslhvy~~v~~g~~ci~v~gd~~Pgq~sv~~~~~Nmnfsa~~tw~r~i~dgrvqvSw~~~q~n~~Ar~~~tal~~~ 480 (874)
T KOG4575|consen 401 IFNKLSLHVYCVVIKGFSCIKVAGDYQPGQYSVDDHRFNMNFSARNTWNRVILDGRVQVSWRFVQCNWGARHLVTALDGS 480 (874)
T ss_pred hhccccccchhhhhcccchhhhccCCCceeEeccccccccchhhhhchheeeecCcccccHHHHhhccCcchhhhHhhhc
Confidence 1111111 22222211 3345 5666 34444433 34555443 444788899999999999997653
Q ss_pred hHHhHHHHHHHhHhhcccCCCCCcc---eeee------------------------------------------------
Q psy2861 170 KKKKKKKKKKKKKKKKKSSNKIAPQ---LVIF------------------------------------------------ 198 (1140)
Q Consensus 170 ~~~~~~k~~~~k~~~~~~~~~~~~~---~~~~------------------------------------------------ 198 (1140)
.--+- ----.+++.+++++.+.|| .+||
T Consensus 481 r~~~i-~~~E~~~~tdd~~~~~e~rtse~~iyeg~~tP~e~awl~k~~~~sLdlwCEvi~gflK~P~~i~~~fkyNh~w~ 559 (874)
T KOG4575|consen 481 REAKI-DGNELRYETDDHYFMTESRTSEEFIYEGEFTPSEHAWLLKPRPLSLDLWCEVILGFLKIPFVISLFFKYNHSWI 559 (874)
T ss_pred cceee-eeeeeeEeeccccccccccchhhheeccccChhHHHHHhhhhhhhcchhHHHHHhhhcCccceeeeeecchhhh
Confidence 22110 0012466777888888874 3454
Q ss_pred ---------------------------------------e----ee------------cCcccccc--------------
Q psy2861 199 ---------------------------------------M----NI------------GTTSVVGN-------------- 209 (1140)
Q Consensus 199 ---------------------------------------~----~~------------~~~~~~~~-------------- 209 (1140)
| +| -||++...
T Consensus 560 ~~~~d~e~r~iD~s~~~s~pih~~~~~~s~~~~~n~yFlm~P~E~i~Th~penp~~qfImpsv~~~~~~~LPwVssvyF~ 639 (874)
T KOG4575|consen 560 DNKLDEETRYIDKSGAASIPIHLPPKGDSLIFHYNLYFLMSPEENIITHMPENPLKQFIMPSVTEDVCYLLPWVSSVYFE 639 (874)
T ss_pred hhhccceeEEEeeccccccccccCcCCcchhccccceeecChhhheecCCCCchhhhhccccccchheeeeeccchhhhh
Confidence 0 00 04544333
Q ss_pred ----------eEEEEEech---hhH--HHHHHHhhcCCCC-----cccccCCcccccccceeEEee-ccceeeeecCCCC
Q psy2861 210 ----------IVSFRVHAP---AAA--EFLLDVFANSVTP-----REYLTGEPMKFKSVCKFKIVC-TELYTVMVPLPDC 268 (1140)
Q Consensus 210 ----------~~~~~vh~~---~~~--~~l~d~~~n~~~~-----~~~~~g~~~~~~~~~k~~~~~-~~~~~~~~~~~~~ 268 (1140)
.++|++|+. |++ +..+|||||.|++ .+|++ ++++|.++||||++| +.+++||++||+|
T Consensus 640 n~Lkl~kFnt~v~fl~d~evlq~~~laP~d~e~fA~vv~~salAp~Ay~~-q~~k~t~v~kfk~~~d~r~~~IkavlP~n 718 (874)
T KOG4575|consen 640 NKLKLKKFNTVVTFLVDAEVLQSTRLAPLDLEIFANVVSSSALAPGAYLT-QPIKFTSVCKFKVVCDERLQVIKAVLPEN 718 (874)
T ss_pred cceeeeeecceeeeeccchhhhhhccCcchhhheeeecccccccccchhc-cchhhhhhhhhhhcCcceeeeeeccCCCc
Confidence 337999999 664 6689999999998 89999 999999999999999 6799999999999
Q ss_pred CC-C-CCCCc----cccccccccccccccccc
Q psy2861 269 AS-G-EWGPT----KATRLFGLIPITHPVAQE 294 (1140)
Q Consensus 269 ~~-~-~~~~~----~~~~~~~~~~~~~~~~~~ 294 (1140)
++ | +|+|+ +++|+||+-||+|+++++
T Consensus 719 ~~agvl~i~aGrlv~~t~~~~~hP~sm~~p~~ 750 (874)
T KOG4575|consen 719 ASAGVLWIPAGRLVKATRLFGLHPISMPDPII 750 (874)
T ss_pred cccceeEeecccccccceecccccccccccee
Confidence 99 8 99999 999999999999999887
No 6
>COG5279 CYK3 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain [Cell division and chromosome partitioning]
Probab=99.42 E-value=8.7e-14 Score=160.81 Aligned_cols=125 Identities=22% Similarity=0.446 Sum_probs=109.3
Q ss_pred cccccccccccCCCCccccccCCCCCCcceeeeccc-CCcccccccccCc------eeEEEeeEEEEeeeee--------
Q psy2861 1003 PSIEDKCNQCSQSPHDTPHLFNCPGRPTTLTVIDLW-QNPIATAEFLELP------TALLVLIQYFLIFPYF-------- 1067 (1140)
Q Consensus 1003 ~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~i~~~-~~~~~~~~~~~~~------~a~~v~~~~~~~~~~F-------- 1067 (1140)
-++-.--+||..||++||.+||.+|||| -+|+|| -++|. |=.|+ ..+++|++||+.|.+|
T Consensus 203 ~~~I~heavCtgYa~lfK~lcn~lgIp~--~iIegf~k~~~~---~~~~~~iNHaWN~VkiD~~yy~VDtTwgdPI~~d~ 277 (521)
T COG5279 203 SVLINHEAVCTGYAELFKELCNALGIPC--EIIEGFLKSPIY---YTRDININHAWNIVKIDNEYYLVDTTWGDPIHPDQ 277 (521)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCCce--EEEeeccccccc---ccCCccccceeeEEEECCeEEEEeeecCCCCcccc
Confidence 4555567899999999999999999999 999999 55554 22444 7899999999999977
Q ss_pred --e-cccCceeeccChHhHHhhcCCCCCCcccccCCCChhhhhcCCccchhhhccCcCCCCCcceEEE
Q psy2861 1068 --R-YEYDDHYFLTDPREFIYEFFPLQPEWQLLKTSISLRDFEELPFVRSLFFRYGLYFPDTNTKAVM 1132 (1140)
Q Consensus 1068 --~-~~~nd~YFlt~P~~fi~tHfP~d~~WQLL~~p~s~~~Fe~~p~~~~~ff~~gl~~~~~~~~~~~ 1132 (1140)
. .+.|++||++.|.++|.+|+|..+.||++..|+....+...|.+++.||+.+|.|.+..++-..
T Consensus 278 ~~~~~~~n~~YF~lap~qMi~tH~p~k~~wq~~~~~~d~~~~~~lp~vt~~~f~~~l~l~~~~~~~~~ 345 (521)
T COG5279 278 NSKSSKINHSYFLLAPNQMIATHVPEKDDWQFIKPDLDMPIVMALPWVSPVFFTLGLKLRKFNTSILH 345 (521)
T ss_pred cccccccCchhccCChHHHhhhcCCCcchhhccCCchhhhhhhhcccccchhhcccceeeeccccccc
Confidence 2 2799999999999999999999999999999999999999999999999999998887776543
No 7
>COG1305 Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]
Probab=99.32 E-value=3.8e-12 Score=137.99 Aligned_cols=119 Identities=20% Similarity=0.285 Sum_probs=93.5
Q ss_pred hhHHHHHHHHhcCCCCChHHHHHHHHHhhccCCCcceEecCCCCCCCccccccccccccchhhhhhhhhccccccccccc
Q psy2861 392 HTFTDLVRQLAGRHATSDIEKARTLFRWITVKNLNTMSFDDNMAGDTPMGLLRGIKHGTESYHVLFKRLCRGIIAGFYPL 471 (1140)
Q Consensus 392 ~s~~~La~~L~~~~~~tD~EKvRAIy~WI~~kN~~nI~YD~~~~~~~p~~~l~~i~~~~~sy~~l~kr~~~~~~~G~~P~ 471 (1140)
..+.+||..++.+ ..+.++|+.+++.|+.. ++.|+...... .
T Consensus 142 ~~~~~la~~~~~~-~~~~~~~~~~~~~~~~~----~~~y~~~~~~~------------~--------------------- 183 (319)
T COG1305 142 PRVAELAARETGG-ATTPREKAAALFDYVNS----KIRYSPGPTPV------------T--------------------- 183 (319)
T ss_pred HHHHHHHHHhhcc-cCCHHHHHHHHHHHHhh----cceeecCCCCC------------C---------------------
Confidence 5789999999887 89999999999999985 58888653110 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCcc-CCCCCCCceEEEEE
Q psy2861 472 FTVKNLNTMSFDNMTGDTPMGLPRGIKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVK-FEDNRFRNSWNAVY 550 (1140)
Q Consensus 472 ~~~~~~~~~~f~~~~~~~p~~vL~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~-~~~~~~nHAWNaV~ 550 (1140)
.++.++|..++|+|.++|+|+.+|||++||||++|.||..+.....+.. .......|+|.+|+
T Consensus 184 ----------------~~~~~~l~~~~G~C~d~a~l~val~Ra~GIpAR~V~Gy~~~~~~~~~~~~~~~~~~~Haw~ev~ 247 (319)
T COG1305 184 ----------------GSASDALRLGRGVCRDFAHLLVALLRAAGIPARYVSGYLGAEVEPLSGRPLVRNDDAHAWAEVY 247 (319)
T ss_pred ----------------CCHHHHHHhCCcccccHHHHHHHHHHHcCCcceeeeccccCCCCcccccccccCcccceeeeee
Confidence 1234567778999999999999999999999999999986553211111 12345689999999
Q ss_pred ECC-eEEEEeeccCC
Q psy2861 551 VAG-AWRFVQCNWGA 564 (1140)
Q Consensus 551 LDG-~WylVDaTWga 564 (1140)
++| .|+.+|+|-+.
T Consensus 248 ~~~~gW~~~Dpt~~~ 262 (319)
T COG1305 248 LPGRGWVPLDPTNGL 262 (319)
T ss_pred cCCCccEeecCCCCC
Confidence 999 59999999876
No 8
>PF04473 DUF553: Transglutaminase-like domain; InterPro: IPR007562 This entry represents a transglutaminase-like domain found in a family of uncharacterised archaeal proteins that had previously been called DUF553 and UPF0252.
Probab=99.13 E-value=1.8e-10 Score=117.82 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=89.8
Q ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHhhccCCCcceEecCCCCCCCccccccccccccchhhhhhhhhcccccccccccc
Q psy2861 393 TFTDLVRQLAGRHATSDIEKARTLFRWITVKNLNTMSFDDNMAGDTPMGLLRGIKHGTESYHVLFKRLCRGIIAGFYPLF 472 (1140)
Q Consensus 393 s~~~La~~L~~~~~~tD~EKvRAIy~WI~~kN~~nI~YD~~~~~~~p~~~l~~i~~~~~sy~~l~kr~~~~~~~G~~P~~ 472 (1140)
.++.|+..| . ..+..|++..|..|+.+ ||+||+......+.... ....+. + +.
T Consensus 2 ki~~l~~~l-k--g~~~~e~~~nIl~W~~~----NI~Yd~~Ka~~~~~~i~-----~~~~~~----~----~~------- 54 (153)
T PF04473_consen 2 KIKNLAEEL-K--GNDIKETIWNILEWEDE----NIEYDYEKAESPEPFIY-----IWSTYR----T----EV------- 54 (153)
T ss_pred chHHHHHHh-c--CCCHHHHHHHHHHHHHh----ccccchhhccCCCceeE-----eeeccc----e----ee-------
Confidence 367899999 3 47899999999999996 69999876553211100 000000 0 00
Q ss_pred ccccccccccCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEEC
Q psy2861 473 TVKNLNTMSFDNMTGDTPMGLPRGIKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVA 552 (1140)
Q Consensus 473 ~~~~~~~~~f~~~~~~~p~~vL~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LD 552 (1140)
.+-.+ ....-++|.++|..|+|||.|||.|..+||-.+|+...+|.+..-. +.. .|||++|.+|
T Consensus 55 --~~~~~---~~~~i~tp~etl~~k~GiC~DYA~Lta~lLl~~g~~~~yi~~~~~~----------~~~-~Haa~aV~in 118 (153)
T PF04473_consen 55 --YEDYK---NSTYIQTPYETLKYKKGICGDYAILTAALLLNMGYSPVYILHIEFD----------NDP-GHAAVAVKIN 118 (153)
T ss_pred --ecccc---ccccccCHHHHHHcCCeeeHHHHHHHHHHHHHCCCCceEEEEEecC----------CCC-CeEEEEEEEC
Confidence 00000 0012357999999999999999999999999999999888877521 112 5999999999
Q ss_pred CeEEEEeecc
Q psy2861 553 GAWRFVQCNW 562 (1140)
Q Consensus 553 G~WylVDaTW 562 (1140)
|+|+++|...
T Consensus 119 g~~yvlDq~~ 128 (153)
T PF04473_consen 119 GKYYVLDQHL 128 (153)
T ss_pred CEEEEEeCCC
Confidence 9999999874
No 9
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.45 E-value=3.7e-08 Score=130.15 Aligned_cols=84 Identities=11% Similarity=0.138 Sum_probs=67.5
Q ss_pred hhhHHHhhccCChhhhhhhhHhhhh------cCcccccccccccccCC--------------CccccCcCCCCccc--hh
Q psy2861 22 EDDLYRIFARQREEEDNRIKQEFRH------RGIIGGFHPLFTVKNLN--------------TMSFDDNITGDTPM--GL 79 (1140)
Q Consensus 22 ~~ilfrmy~d~~~~~~~~~k~~~~~------~~Ii~gy~~l~~~~~~d--------------~esq~rni~~w~Pv--~I 79 (1140)
++||||||+|.++++ . +.++++ .+|+++|..|-..+.-. .++|+|||++|+|| +|
T Consensus 1648 l~il~~~~~d~~~~~--~-~~~~~~~l~~~c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~i 1724 (1780)
T PLN03076 1648 LTFLQNLILDKPPLA--K-EAEVESRLVELCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVAT 1724 (1780)
T ss_pred HHHHHHHhcCCCccc--h-HHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHH
Confidence 799999999988744 2 344555 99999999992200000 17899999999999 99
Q ss_pred hccccccCcccHHHHHHHHHHhhhccccCCccccc
Q psy2861 80 LRGIKHGTESYHVLFKRLCRQFFEIVETQPSLLEN 114 (1140)
Q Consensus 80 l~G~~~~~~~~~~~F~~~~~~~Y~l~~~~~~~l~~ 114 (1140)
|+||. +||+++|++|++.||||++ .++.+
T Consensus 1725 l~~~~---~l~~~~f~~~~~~~y~l~~---~l~~~ 1753 (1780)
T PLN03076 1725 LQAVC---GLGDSSFEKNLVRFFPLLA---GLISC 1753 (1780)
T ss_pred HHHHh---cCCHHHHHHHHHHHHHHHH---HHHhc
Confidence 99999 9999999999999999999 55555
No 10
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=97.37 E-value=5.5e-05 Score=65.82 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=46.1
Q ss_pred ccccccccccCCCCccccccCCCCCCcceeeeccc---CCcccccccccCc---eeEEEeeEEEEeeeee
Q psy2861 1004 SIEDKCNQCSQSPHDTPHLFNCPGRPTTLTVIDLW---QNPIATAEFLELP---TALLVLIQYFLIFPYF 1067 (1140)
Q Consensus 1004 ~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~i~~~---~~~~~~~~~~~~~---~a~~v~~~~~~~~~~F 1067 (1140)
.|++|.|.|.++|.+|..++..+|||| -++-|| .+.....+--..+ +.+..+++|+.|||++
T Consensus 1 ~~~~~~G~C~~~a~l~~~llr~~GIpa--r~v~g~~~~~~~~~~~~~~~~~H~W~ev~~~~~W~~~D~~~ 68 (68)
T smart00460 1 LLKTKYGTCGEFAALFVALLRSLGIPA--RVVSGYLKAPDTIGGLRSIWEAHAWAEVYLEGGWVPVDPTP 68 (68)
T ss_pred CCcccceeeHHHHHHHHHHHHHCCCCe--EEEeeeecCCCCCcccccCCCcEEEEEEEECCCeEEEeCCC
Confidence 378999999999999999999999999 888898 1111100000122 6777799999999953
No 11
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=96.94 E-value=9.1e-05 Score=70.01 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=45.2
Q ss_pred hccccccccccccCCCCccccccCCCCCCcceeeecccC-CcccccccccCc------eeEEE-eeEEEEeee
Q psy2861 1001 INPSIEDKCNQCSQSPHDTPHLFNCPGRPTTLTVIDLWQ-NPIATAEFLELP------TALLV-LIQYFLIFP 1065 (1140)
Q Consensus 1001 ~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~i~~~~-~~~~~~~~~~~~------~a~~v-~~~~~~~~~ 1065 (1140)
+..+|++|+|.|.+||.+|-.++..+|||| .+|-|+. +.-....+...+ |.+.+ +++|+.+||
T Consensus 43 ~~~~l~~~~G~C~~~a~l~~allr~~Gipa--r~v~g~~~~~~~~~~~~~~~~~~H~w~ev~~~~~~W~~~Dp 113 (113)
T PF01841_consen 43 ASEVLRSGRGDCEDYASLFVALLRALGIPA--RVVSGYVKGPDPDGDYSVDGNDNHAWVEVYLPGGGWIPLDP 113 (113)
T ss_dssp HHHHHHCEEESHHHHHHHHHHHHHHHT--E--EEEEEEEEECSSTTCTSTSSEEEEEEEEEEETTTEEEEEET
T ss_pred HHHHHHcCCCccHHHHHHHHHHHhhCCCce--EEEEEEcCCccccccccCCCCCCEEEEEEEEcCCcEEEcCC
Confidence 566788999999999999999999999999 8888882 211100111111 66667 889999998
No 12
>KOG0909|consensus
Probab=96.81 E-value=0.00039 Score=80.78 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=55.0
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEEC--CeEEEEeeccCC
Q psy2861 488 DTPMGLPRGIKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVA--GAWRFVQCNWGA 564 (1140)
Q Consensus 488 ~~p~~vL~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LD--G~WylVDaTWga 564 (1140)
.+|...|.+|+|-|..+|+.|.-+||++|..+++|--+. .|-|++||.+ .+|..||++-+.
T Consensus 210 Ndp~kLLeTRkGRCGEWANCFTllcralg~daR~i~d~t----------------DHVWtEvYS~~qqRW~HvDpcE~v 272 (500)
T KOG0909|consen 210 NDPIKLLETRKGRCGEWANCFTLLCRALGLDARYIWDRT----------------DHVWTEVYSNAQQRWVHVDPCENV 272 (500)
T ss_pred CCHHHHHhhccCccchHHHHHHHHHHHcCCcceEEeecC----------------cchhHHhhhhhhheeEeecccccc
Confidence 468889999999999999999999999999999986542 7999999996 799999998764
No 13
>PF14381 EDR1: Ethylene-responsive protein kinase Le-CTR1
Probab=96.43 E-value=0.0066 Score=65.65 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=49.6
Q ss_pred cccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEEC-CeEEEEeeccCCCcc
Q psy2861 497 IKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVA-GAWRFVQCNWGARHL 567 (1140)
Q Consensus 497 rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LD-G~WylVDaTWgag~l 567 (1140)
+.|.|+.=|.||+.||...||||++|.|.-... ..+.|+||.|.++ ++=|+||..-.=|.+
T Consensus 141 ~~G~~rhRALLFKvLAD~iglpCrLvrG~~y~g----------~~~~~a~~~V~~~~~~eyiVDLm~~PG~L 202 (204)
T PF14381_consen 141 RIGLCRHRALLFKVLADRIGLPCRLVRGCYYCG----------WDDDDASNLVKFDDGREYIVDLMGAPGQL 202 (204)
T ss_pred cccchHHHHHHHHHHHHhcCCCceEEeeccCCc----------cCCCCceEEEEcCCCcEEEEEcCCCCCCc
Confidence 467899999999999999999999999985221 1147999999995 677999988766644
No 14
>PF04473 DUF553: Transglutaminase-like domain; InterPro: IPR007562 This entry represents a transglutaminase-like domain found in a family of uncharacterised archaeal proteins that had previously been called DUF553 and UPF0252.
Probab=96.01 E-value=0.0022 Score=66.50 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=47.3
Q ss_pred hhhhccccccccccccCCCCccccccCCCCCCc-ceeeecccCCcccccccccCceeEEEeeEEEEeee
Q psy2861 998 MHRINPSIEDKCNQCSQSPHDTPHLFNCPGRPT-TLTVIDLWQNPIATAEFLELPTALLVLIQYFLIFP 1065 (1140)
Q Consensus 998 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~-~~~~i~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~ 1065 (1140)
.....+||+.|+|+|++||.++..+...+|+.. -+..|+..+.. . -.-+|+++||+||..|.
T Consensus 64 i~tp~etl~~k~GiC~DYA~Lta~lLl~~g~~~~yi~~~~~~~~~-~-----Haa~aV~ing~~yvlDq 126 (153)
T PF04473_consen 64 IQTPYETLKYKKGICGDYAILTAALLLNMGYSPVYILHIEFDNDP-G-----HAAVAVKINGKYYVLDQ 126 (153)
T ss_pred ccCHHHHHHcCCeeeHHHHHHHHHHHHHCCCCceEEEEEecCCCC-C-----eEEEEEEECCEEEEEeC
Confidence 446778999999999999999999999999876 22233322212 2 23399999999999998
No 15
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=95.34 E-value=0.066 Score=58.08 Aligned_cols=68 Identities=18% Similarity=0.087 Sum_probs=52.2
Q ss_pred CCcccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEECCeEEEEeeccCCCc
Q psy2861 495 RGIKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGARH 566 (1140)
Q Consensus 495 ~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LDG~WylVDaTWgag~ 566 (1140)
+.|-|.|.....||..+++++|..+..+.|-....+.... .....|.-+.|.+||+.|+||+-+|++.
T Consensus 43 ~~rGG~C~elN~lf~~lL~~lGf~v~~~~arv~~~~~~~~----~~~~~H~~liV~~~~~~ylvDvGfG~~~ 110 (240)
T PF00797_consen 43 RGRGGYCFELNGLFYWLLRELGFDVTLVSARVYSPGGPDY----WPPRTHLVLIVTLDGERYLVDVGFGGPS 110 (240)
T ss_dssp TT--B-HHHHHHHHHHHHHHCT-EEEEEEEEEETTTTTCC----SSSEEEEEEEEEETTEEEEE-SSSTTC-
T ss_pred cCCCeEhHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCCCC----CCCCceEEEEEEECCEEEEEeccCCCcC
Confidence 5677999999999999999999999999998865532210 2345899999999999999999999873
No 16
>COG1305 Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]
Probab=94.94 E-value=0.0087 Score=65.44 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=51.3
Q ss_pred hhccccccccccccCCCCccccccCCCCCCcceeeeccc---CCcccccccccCc----eeEEE--ee-EEEEeeeeeec
Q psy2861 1000 RINPSIEDKCNQCSQSPHDTPHLFNCPGRPTTLTVIDLW---QNPIATAEFLELP----TALLV--LI-QYFLIFPYFRY 1069 (1140)
Q Consensus 1000 ~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~i~~~---~~~~~~~~~~~~~----~a~~v--~~-~~~~~~~~F~~ 1069 (1140)
....+|+.++|+|+++|+++=.++.-+|||| .++-|| ....+..+.+.-+ +|+.| .| .|+.|||+-..
T Consensus 185 ~~~~~l~~~~G~C~d~a~l~val~Ra~GIpA--R~V~Gy~~~~~~~~~~~~~~~~~~~Haw~ev~~~~~gW~~~Dpt~~~ 262 (319)
T COG1305 185 SASDALRLGRGVCRDFAHLLVALLRAAGIPA--RYVSGYLGAEVEPLSGRPLVRNDDAHAWAEVYLPGRGWVPLDPTNGL 262 (319)
T ss_pred CHHHHHHhCCcccccHHHHHHHHHHHcCCcc--eeeeccccCCCCcccccccccCcccceeeeeecCCCccEeecCCCCC
Confidence 3456788899999999999999999999999 899999 2211111111112 77777 55 49999996544
Q ss_pred ccCce
Q psy2861 1070 EYDDH 1074 (1140)
Q Consensus 1070 ~~nd~ 1074 (1140)
.....
T Consensus 263 ~~~~~ 267 (319)
T COG1305 263 LAGGR 267 (319)
T ss_pred ccCcc
Confidence 43333
No 17
>PF13369 Transglut_core2: Transglutaminase-like superfamily
Probab=92.66 E-value=0.59 Score=48.09 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=45.1
Q ss_pred CCCCCcccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEECCeEEEEeeccCCC
Q psy2861 492 GLPRGIKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGAR 565 (1140)
Q Consensus 492 ~vL~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LDG~WylVDaTWgag 565 (1140)
.+|.+|+|.|-..|.||+.+|+.+||++..|. + .+|-...+.- +..++||++-+..
T Consensus 58 ~vL~~r~G~Pi~L~ily~~va~rlGl~~~~v~-~----------------Pgh~l~r~~~-~~~~~iDpf~~G~ 113 (152)
T PF13369_consen 58 KVLERRRGIPISLAILYLEVARRLGLPAEPVN-F----------------PGHFLVRVRS-DGEFYIDPFNGGR 113 (152)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHcCCeEEEEe-c----------------CCEEEEEEec-CCcEEEccCCCCc
Confidence 47889999999999999999999999999764 1 1476666665 5568999987543
No 18
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=91.35 E-value=0.87 Score=51.75 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=54.2
Q ss_pred CCcccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEECCeEEEEeeccCCC
Q psy2861 495 RGIKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGAR 565 (1140)
Q Consensus 495 ~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LDG~WylVDaTWgag 565 (1140)
+.|-|-|.+...||..+++++|-.+..+.|-....+. +. .+.-.|+-+.|.+||+.|++|+-+|+.
T Consensus 63 ~~RGGyCfE~N~Lf~~~L~~LGF~v~~~~arV~~~~~-~~----~~~~tH~~l~V~i~~~~yLvDVGFG~~ 128 (281)
T PRK15047 63 ARRGGYCFEQNGLFERVLRELGFNVRSLLGRVVLSNP-PA----LPPRTHRLLLVELEGEKWIADVGFGGQ 128 (281)
T ss_pred CCCCEEcHhHHHHHHHHHHHcCCcEEEEEEEEEecCC-CC----CCCcCcEEEEEEECCeeEEEEecCCCC
Confidence 5677999999999999999999999999888754321 11 123489999999999999999999963
No 19
>PF14381 EDR1: Ethylene-responsive protein kinase Le-CTR1
Probab=88.73 E-value=0.18 Score=54.80 Aligned_cols=59 Identities=8% Similarity=-0.035 Sum_probs=44.3
Q ss_pred hhccccccccccccCCCCccccccCCCCCCcceeeeccc--CCc-ccccccccCceeEEE-eeEEEEeee
Q psy2861 1000 RINPSIEDKCNQCSQSPHDTPHLFNCPGRPTTLTVIDLW--QNP-IATAEFLELPTALLV-LIQYFLIFP 1065 (1140)
Q Consensus 1000 ~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~i~~~--~~~-~~~~~~~~~~~a~~v-~~~~~~~~~ 1065 (1140)
-+.++=.=|.|.|+|-|+|||-||+..|+|| .++=|. .|. -. ...|-+++ ++..|+-|=
T Consensus 133 ~~vplG~l~~G~~rhRALLFKvLAD~iglpC--rLvrG~~y~g~~~~-----~a~~~V~~~~~~eyiVDL 195 (204)
T PF14381_consen 133 GVVPLGSLRIGLCRHRALLFKVLADRIGLPC--RLVRGCYYCGWDDD-----DASNLVKFDDGREYIVDL 195 (204)
T ss_pred CeEEEeeecccchHHHHHHHHHHHHhcCCCc--eEEeeccCCccCCC-----CceEEEEcCCCcEEEEEc
Confidence 3445557789999999999999999999999 677776 454 12 22377777 677787764
No 20
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase
Probab=84.05 E-value=1.1 Score=51.42 Aligned_cols=51 Identities=24% Similarity=0.454 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEECCeEEEEeeccCC
Q psy2861 507 LFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGA 564 (1140)
Q Consensus 507 Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LDG~WylVDaTWga 564 (1140)
+...|++.+|||++.|.|---..|-. ...-+.|.+|+-+++|.++|+.-|.
T Consensus 2 ~~~~lL~~a~Ipar~v~gl~Led~rr-------~q~l~~~lev~~~~~W~~f~p~tg~ 52 (313)
T PF14402_consen 2 LIVKLLAMAGIPARVVHGLKLEDGRR-------RQSLEPWLEVFNGGKWVLFNPRTGE 52 (313)
T ss_pred HHHHHHHhCCCCccEeeeEEecCCcc-------ccCcHhHHheeeCCeEEEECCCCCC
Confidence 57789999999999999976333211 2346899999999999999997664
No 21
>PF06035 Peptidase_C93: Bacterial transglutaminase-like cysteine proteinase BTLCP; InterPro: IPR010319 Structural analysis predicts that this family of proteins are bacterial transglutaminase-like cysteine peptidases (BTLCPs) with an invariant Cys-His-Asp catalytic triad and an N-terminal signal sequence. They are predicted to possess the papain-like cysteine proteinase fold and catalyse post-translational protein modification through transamidase, acetylase or hydrolase activity. Inspection of neighbouring genes suggests a link between this predicted activity and a type-I secretion system resembling ATP-binding cassette exporters of toxins and proteases involved in bacterial pathogenicity [].; PDB: 4FGQ_B 4FGP_B 4FGO_A.
Probab=83.38 E-value=1.9 Score=45.98 Aligned_cols=56 Identities=7% Similarity=-0.092 Sum_probs=36.2
Q ss_pred CcccccHHHHHHHHHHHHHcCCcEE-EEEEEeCCCCCCCCccCCCCCCCceEEEEEECCeEEEEeec
Q psy2861 496 GIKHGTESYHVLFKLLCSYAGLHCV-VIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCN 561 (1140)
Q Consensus 496 ~rkGVC~gYA~Lf~~McraaGIpc~-vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LDG~WylVDaT 561 (1140)
.+.|.|+|||-+=..++.++|+|.. .-.-+++... ...||-..|+.++.++.+|--
T Consensus 75 ~g~GDCEDyai~K~~~L~~~G~p~~~L~ltvV~~~~----------~~~HaVL~v~t~~g~lVLDNl 131 (170)
T PF06035_consen 75 RGAGDCEDYAIAKRFALIELGVPAEALRLTVVRDRN----------GEGHAVLTVRTDRGDLVLDNL 131 (170)
T ss_dssp HTEE-HHHHHHHHHHHHHHHT--GGGEEEEEEEETT----------TEEEEEEEE-STS--EEE-SS
T ss_pred CCcCCcHhHHHHHHHHHHHcCCCHHHeEEEEEECCC----------CCCCEEEEEECCCCCEEEECc
Confidence 3579999999999999999999973 2233333321 137999999999999999853
No 22
>PF13471 Transglut_core3: Transglutaminase-like superfamily
Probab=80.85 E-value=3.7 Score=40.31 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=39.0
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEECCeE
Q psy2861 498 KHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAW 555 (1140)
Q Consensus 498 kGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LDG~W 555 (1140)
+..|-.-|.....||+..||++..+.|..+..+ ++ ..|||.+ .||.=
T Consensus 55 ~~~CL~~ala~~~~L~~~gi~~~l~iGv~~~~~-----~~----~aHAWve--~~g~~ 101 (117)
T PF13471_consen 55 RSKCLPRALALQRLLRRRGIPATLVIGVRKDDD-----PF----AAHAWVE--CGGRV 101 (117)
T ss_pred CCChHHHHHHHHHHHHhcCCCcEEEEEEeeCCC-----Cc----eEEEEEE--ECCEE
Confidence 347999999999999999999999999998753 22 3799988 66654
No 23
>KOG0929|consensus
Probab=70.84 E-value=1.8 Score=58.24 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=49.0
Q ss_pred hhhHHHhhccCChhhhhhhhHhhhh--cCcccccccccccccCCCccccCcCCCCccchhhccccccCcccHHHHHHHHH
Q psy2861 22 EDDLYRIFARQREEEDNRIKQEFRH--RGIIGGFHPLFTVKNLNTMSFDDNITGDTPMGLLRGIKHGTESYHVLFKRLCR 99 (1140)
Q Consensus 22 ~~ilfrmy~d~~~~~~~~~k~~~~~--~~Ii~gy~~l~~~~~~d~esq~rni~~w~Pv~Il~G~~~~~~~~~~~F~~~~~ 99 (1140)
++||||||.|++... +.|.+.+.. ..++.+|..+ ..+++ .+| +. . +++.|..++|
T Consensus 1428 l~~lf~~~~~~~~~~-~~i~~~l~~~c~~~l~~y~~~------~~~~~----~a~-----~~------~-~~~~~~~~~~ 1484 (1514)
T KOG0929|consen 1428 LDILFRLLKDDPRVS-EEIESRLVTVCSEVLKGYLSL------TSETH----EAW-----LT------P-SDEEFSARAP 1484 (1514)
T ss_pred HHHHHHHhccCcccc-HHHHHHHHHHHHHHHHHHHhc------cccch----hhh-----cC------C-cHHHHhccCc
Confidence 689999999999865 333566666 9999999999 55554 788 21 2 8899999999
Q ss_pred Hhhhcccc
Q psy2861 100 QFFEIVET 107 (1140)
Q Consensus 100 ~~Y~l~~~ 107 (1140)
.||++++-
T Consensus 1485 ~~~~~l~~ 1492 (1514)
T KOG0929|consen 1485 LYYALLCA 1492 (1514)
T ss_pred hHHHHHHH
Confidence 99998873
No 24
>PRK10941 hypothetical protein; Provisional
Probab=62.64 E-value=21 Score=40.57 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=41.7
Q ss_pred CCCCCcccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEE-CCeEEEEeeccC
Q psy2861 492 GLPRGIKHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYV-AGAWRFVQCNWG 563 (1140)
Q Consensus 492 ~vL~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~L-DG~WylVDaTWg 563 (1140)
.||.+|+|.--..|-||..+++.+|+|+.-|. + | .|--..+-. ||+=++||| |+
T Consensus 89 ~VL~~R~G~PisL~il~l~iA~~lglp~~gV~-------f-P---------ghfllr~~~~d~~~~~IDP-f~ 143 (269)
T PRK10941 89 KVLKTRQGSAVSLGAILLWIANRLDLPLMPVI-------F-P---------TQLILRADWLDGEMWLINP-FN 143 (269)
T ss_pred HHHHccCCCcHHHHHHHHHHHHHcCCCeeeee-------c-C---------chheeeeecCCCceEEEeC-CC
Confidence 47899999999999999999999999998542 1 1 465555543 466679999 44
No 25
>KOG2422|consensus
Probab=60.23 E-value=2.5 Score=52.02 Aligned_cols=26 Identities=50% Similarity=0.611 Sum_probs=13.9
Q ss_pred hhhHHHHhhhhHHhHHHHHHHhHhhc
Q psy2861 160 VCTLEKAKKKKKKKKKKKKKKKKKKK 185 (1140)
Q Consensus 160 ~~~~~~~~~~~~~~~~k~~~~k~~~~ 185 (1140)
+++++|+-|.||||||||||||-+.+
T Consensus 81 ~~~~~~~sk~k~KKK~krkkKk~~~~ 106 (665)
T KOG2422|consen 81 ITLASKSSKNKKKKKKKRKKKKSTAE 106 (665)
T ss_pred ccccchhhccccchhhhhccccccCc
Confidence 45556655555555555555544444
No 26
>COG2162 NhoA Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.02 E-value=44 Score=38.29 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=53.1
Q ss_pred CCCCcccccHHHHHHHHHHHHHcCCcEEEEEEEe--CCCCCCCCccCCCCCCCceEEEEEECCeEEEEeeccCCCccc
Q psy2861 493 LPRGIKHGTESYHVLFKLLCSYAGLHCVVIKGYS--KSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWGARHLV 568 (1140)
Q Consensus 493 vL~~rkGVC~gYA~Lf~~McraaGIpc~vV~Gy~--Kg~g~~pg~~~~~~~~nHAWNaV~LDG~WylVDaTWgag~l~ 568 (1140)
++..|-|-|.+...||...++++|-..+.+.|-. +++ |+.. ++-.|+=..|.++|+-|++|+-+|...+.
T Consensus 62 v~~rRGGyCfElNglf~~vL~~lGF~v~~l~arV~~g~~---~~a~---~~~tH~~L~v~~~~~~~l~DvGFGg~~l~ 133 (275)
T COG2162 62 VLARRGGYCFELNGLFGRVLRELGFNVRLLLARVVWGLA---PDAL---PPRTHRLLLVELEGETWLADVGFGGQTLT 133 (275)
T ss_pred HhccccceehhhhhHHHHHHHHcCCcceeeEEEEEecCC---CCCC---CcccceEEEEEecCceeEEecCCCCCCcC
Confidence 3456778999999999999999999888765544 332 2222 23479999999999999999999954443
No 27
>KOG2422|consensus
Probab=50.51 E-value=4 Score=50.35 Aligned_cols=27 Identities=48% Similarity=0.528 Sum_probs=15.5
Q ss_pred hhhHHHHhhhhHHhHHHHHHHhHhhcc
Q psy2861 160 VCTLEKAKKKKKKKKKKKKKKKKKKKK 186 (1140)
Q Consensus 160 ~~~~~~~~~~~~~~~~k~~~~k~~~~~ 186 (1140)
..-+.|.||||||||||||.+++--++
T Consensus 84 ~~~~sk~k~KKK~krkkKk~~~~~d~~ 110 (665)
T KOG2422|consen 84 ASKSSKNKKKKKKKRKKKKSTAEVDKD 110 (665)
T ss_pred cchhhccccchhhhhccccccCccccc
Confidence 344556666666666666655544443
No 28
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=47.16 E-value=11 Score=40.68 Aligned_cols=8 Identities=25% Similarity=0.086 Sum_probs=3.6
Q ss_pred ccCCCCCc
Q psy2861 186 KSSNKIAP 193 (1140)
Q Consensus 186 ~~~~~~~~ 193 (1140)
+++..+.|
T Consensus 168 K~~~~~~~ 175 (178)
T PF10278_consen 168 KHSPEHPG 175 (178)
T ss_pred cCCCcCCC
Confidence 44444444
No 29
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=43.69 E-value=1e+02 Score=31.72 Aligned_cols=85 Identities=12% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCcCCChhhhccCceecCCCCcEEEc---CcEEEEEEeecCCcceeeeccccCCcchhhcccce-EEEEecCcEEEEEEE
Q psy2861 787 GEWGPTKATRLFGLIPITHPEALIFA---GKEMEIQFRMSKPLTDFMSTLHKNGADEKKLNKCV-THRILDQDIVSFIIN 862 (1140)
Q Consensus 787 g~wGPs~~~~~~GLi~vSH~eaII~t---~G~~eI~F~lsrpL~~f~a~L~kdg~~E~~L~r~V-~~~v~d~~~Vtf~V~ 862 (1140)
-.|+.-. -..|.. -|++.|+.. |+.|+|+.++..... .--.+.+..++=.-....| ..++..+ ++.+.
T Consensus 22 ~dWtde~--i~qG~a--~~~g~VsFeai~D~~a~V~v~~~~~~~-~~~~~R~i~VPF~V~~d~i~V~Svls~---~~~~~ 93 (125)
T PF11033_consen 22 IDWTDED--IEQGYA--WADGAVSFEAISDGAAEVEVTLNEKFE-AEDAQRTISVPFTVKGDGIEVSSVLSE---KLSFD 93 (125)
T ss_pred cccCHhH--HhCcce--ecCCcEEEeeecCCeEEEEEEeCCccc-CccceEEEEeeEEEcCCCEEEEEeecC---cEEEe
Confidence 3566533 234555 478888874 788999888776531 1111222222111122333 3345555 47888
Q ss_pred CCCCceeeEEEEEecCCC
Q psy2861 863 FPEEGQYGFDVYTREISP 880 (1140)
Q Consensus 863 lPeaG~YgL~IYaKe~~~ 880 (1140)
+| +|.|.|..++-.+.+
T Consensus 94 ip-~G~Y~Lv~~~ip~~~ 110 (125)
T PF11033_consen 94 IP-KGDYQLVFQTIPPED 110 (125)
T ss_pred cC-CCcEEEEEEEeCCCc
Confidence 89 999999999997543
No 30
>PF13369 Transglut_core2: Transglutaminase-like superfamily
Probab=43.48 E-value=6.2 Score=40.68 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=56.5
Q ss_pred hhccccccccccccCCCCccccccCCCCCCcceeeecccCCcccccccccCceeEEEeeEEEEeeeeeecccCceeeccC
Q psy2861 1000 RINPSIEDKCNQCSQSPHDTPHLFNCPGRPTTLTVIDLWQNPIATAEFLELPTALLVLIQYFLIFPYFRYEYDDHYFLTD 1079 (1140)
Q Consensus 1000 ~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~F~~~~nd~YFlt~ 1079 (1140)
.|+++|++|+|.|.-.+.+|-.+++.+|+++ ..|. +-|.+. +.... +..+.+|| ++....++.
T Consensus 55 ~l~~vL~~r~G~Pi~L~ily~~va~rlGl~~--~~v~-~Pgh~l--------~r~~~-~~~~~iDp-----f~~G~~l~~ 117 (152)
T PF13369_consen 55 FLHKVLERRRGIPISLAILYLEVARRLGLPA--EPVN-FPGHFL--------VRVRS-DGEFYIDP-----FNGGRLLSR 117 (152)
T ss_pred hHHHHHhcCCCCcHHHHHHHHHHHHHcCCeE--EEEe-cCCEEE--------EEEec-CCcEEEcc-----CCCCccCCH
Confidence 3677899999999999999999999999999 5443 333333 22233 33477888 333333333
Q ss_pred hH--hHHhhcC-CCCCCcccccCCCChhhhh
Q psy2861 1080 PR--EFIYEFF-PLQPEWQLLKTSISLRDFE 1107 (1140)
Q Consensus 1080 P~--~fi~tHf-P~d~~WQLL~~p~s~~~Fe 1107 (1140)
.+ .++..+- |.+.....|+ |.|..|..
T Consensus 118 ~~l~~~l~~~~~~~~~~~~~l~-p~s~~eil 147 (152)
T PF13369_consen 118 EELERLLSRMGGPAELDPEYLK-PASPREIL 147 (152)
T ss_pred HHHHHHHHhccCcccCCHHHhC-CCCHHHHH
Confidence 33 3444432 3345555665 66665543
No 31
>COG3672 Predicted transglutaminase-like cysteine proteinase [General function prediction only]
Probab=40.60 E-value=66 Score=35.18 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=40.5
Q ss_pred CcccccHHHHHHHHHHHHHcCCcEE-EEEEEeCCCCCCCCccCCCCCCCceEEEEEEC-CeEEEEe
Q psy2861 496 GIKHGTESYHVLFKLLCSYAGLHCV-VIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVA-GAWRFVQ 559 (1140)
Q Consensus 496 ~rkGVC~gYA~Lf~~McraaGIpc~-vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LD-G~WylVD 559 (1140)
+..|+|+|||.+=...+..+|++.- ..--+++.++ ...|+-..|+-| |.| .+|
T Consensus 105 ~~~GDCEDyal~KRr~L~~~G~s~~~Llitvvr~~~----------gegHaVLtVrTd~GD~-VLD 159 (191)
T COG3672 105 TGAGDCEDYALEKRRRLMEAGVSSSALLITVVRKPD----------GEGHAVLTVRTDRGDF-VLD 159 (191)
T ss_pred CCcccHHHHHHHHHHHHHHcCCChhhEEEEEEEcCC----------CceeEEEEEEcCCCCE-Eee
Confidence 5679999999999999999999984 3345555442 237999999997 775 444
No 32
>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.30 E-value=18 Score=37.77 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=14.4
Q ss_pred EEEECCeEEEEeeccC
Q psy2861 548 AVYVAGAWRFVQCNWG 563 (1140)
Q Consensus 548 aV~LDG~WylVDaTWg 563 (1140)
=|++||+||+||.|-.
T Consensus 115 Fvk~ngrWyyiDgtv~ 130 (151)
T COG3012 115 FVKINGRWYYIDGTVP 130 (151)
T ss_pred heEECCEEEEECCCCC
Confidence 4889999999999976
No 33
>PF15644 Tox-PL: Papain fold toxin 1; PDB: 3B21_A.
Probab=36.55 E-value=63 Score=31.72 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=33.7
Q ss_pred ccccHHHHHHHHHHHHHcCCcEEEEEEEeCCCCCCCCccCCCCCCCceEEEEEECCeEEEEeec
Q psy2861 498 KHGTESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCN 561 (1140)
Q Consensus 498 kGVC~gYA~Lf~~McraaGIpc~vV~Gy~Kg~g~~pg~~~~~~~~nHAWNaV~LDG~WylVDaT 561 (1140)
..++.+|..|...|-..-.-..-+|...+++.+ ..|+||+|+-+|.=.++|+=
T Consensus 54 ~~~~~~~~~i~~~l~~~~~gsr~~v~~~~~gg~-----------~gHa~nvv~~~G~i~~~D~Q 106 (111)
T PF15644_consen 54 LAGDTSYRDIEDLLRDLGPGSRAIVSVSWKGGG-----------PGHAFNVVNQNGKIVFLDPQ 106 (111)
T ss_dssp ---HHHHHHHHHHHHHS-TT-EEEEEETT----------------TTEEEEEEE-SSEEEEBTT
T ss_pred ccccccHHHHHHHHHhCCCCcEEEEEEEEeccc-----------cceEEEEEeCCCeEEEEeCC
Confidence 345788888888777766666667766665432 16999999999998888863
No 34
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=33.74 E-value=26 Score=38.93 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=7.4
Q ss_pred cccccccccccccch
Q psy2861 282 FGLIPITHPVAQEDQ 296 (1140)
Q Consensus 282 ~~~~~~~~~~~~~~~ 296 (1140)
--|-|+|-++-.-.|
T Consensus 155 ~am~PmTkEEyearQ 169 (225)
T PF10500_consen 155 QAMAPMTKEEYEARQ 169 (225)
T ss_pred hhcCCCCHHHHHHHH
Confidence 334566655544433
No 35
>KOG3794|consensus
Probab=33.70 E-value=26 Score=41.69 Aligned_cols=8 Identities=0% Similarity=-0.259 Sum_probs=3.9
Q ss_pred CcCCCCcc
Q psy2861 69 DNITGDTP 76 (1140)
Q Consensus 69 rni~~w~P 76 (1140)
..-..|++
T Consensus 90 E~kFewq~ 97 (453)
T KOG3794|consen 90 EDKFEWQR 97 (453)
T ss_pred cccccccc
Confidence 44445555
No 36
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=27.85 E-value=2.5e+02 Score=29.36 Aligned_cols=58 Identities=10% Similarity=-0.142 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHHHHcCC-cEEEEEE-EeCCCCCCCCccCCCCCCCceEEEEEECCeEEEEeeccC
Q psy2861 499 HGTESYHVLFKLLCSYAGL-HCVVIKG-YSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWG 563 (1140)
Q Consensus 499 GVC~gYA~Lf~~McraaGI-pc~vV~G-y~Kg~g~~pg~~~~~~~~nHAWNaV~LDG~WylVDaTWg 563 (1140)
+-|.+-+.....+++..|+ ..+++.= ++.+.. .....||.-..+..+|+=|.+|+|-.
T Consensus 5 ~~C~~a~~~v~~~lk~~g~~~~k~~~l~~W~~~~-------~~~p~NH~vv~~k~~g~eyV~D~Ta~ 64 (135)
T PF15645_consen 5 EQCESAMKEVADFLKDKGYEDIKYRGLLIWENAN-------DDSPTNHFVVVAKKNGKEYVFDPTAH 64 (135)
T ss_pred HHHHHHHHHHHHHHHhCCCCcceeeEEEEecCCC-------ccCCcceEEEEEEECCEEEEEeCcHH
Confidence 3499999999999999998 4455422 233321 13456999999999999999999953
No 37
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=26.40 E-value=3.7e+02 Score=23.19 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=20.1
Q ss_pred EEEEeccEEEEEEEcCcCceEEEEEEEecc
Q psy2861 719 MQSVVGNIVSFRVHAPAAAEFLLDVFANSV 748 (1140)
Q Consensus 719 ~Q~~~~~~~~f~V~~P~~G~y~L~IfA~~~ 748 (1140)
|+........++...-.||.|.|+|.|+..
T Consensus 21 W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~~ 50 (66)
T PF07495_consen 21 WITLGSYSNSISYTNLPPGKYTLEVRAKDN 50 (66)
T ss_dssp EEEESSTS-EEEEES--SEEEEEEEEEEET
T ss_pred EEECCCCcEEEEEEeCCCEEEEEEEEEECC
Confidence 443333333788888999999999999964
No 38
>KOG2775|consensus
Probab=24.96 E-value=30 Score=40.17 Aligned_cols=16 Identities=19% Similarity=-0.043 Sum_probs=10.8
Q ss_pred EEEEECCeEEEEeecc
Q psy2861 547 NAVYVAGAWRFVQCNW 562 (1140)
Q Consensus 547 NaV~LDG~WylVDaTW 562 (1140)
-+|.|+|+-|-|-+.-
T Consensus 230 yEvEi~Gk~~~VKpIr 245 (397)
T KOG2775|consen 230 YEVEINGKTYQVKPIR 245 (397)
T ss_pred eEEEeCCceecceecc
Confidence 3677777777777653
No 39
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=24.38 E-value=40 Score=37.89 Aligned_cols=6 Identities=33% Similarity=1.231 Sum_probs=3.6
Q ss_pred eeeeec
Q psy2861 120 YYMYIG 125 (1140)
Q Consensus 120 yy~~~g 125 (1140)
||.++|
T Consensus 148 ~YlS~~ 153 (232)
T TIGR00869 148 WYLSLG 153 (232)
T ss_pred HHHHHH
Confidence 566654
No 40
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=22.12 E-value=2.6e+02 Score=34.70 Aligned_cols=68 Identities=10% Similarity=0.119 Sum_probs=45.7
Q ss_pred EEEcCcEEEEEEeec--CCcceeeeccccCCcchhhcccceEEEEecCc-EEEEEEECCCCceeeEEEEEecCCC
Q psy2861 809 LIFAGKEMEIQFRMS--KPLTDFMSTLHKNGADEKKLNKCVTHRILDQD-IVSFIINFPEEGQYGFDVYTREISP 880 (1140)
Q Consensus 809 II~t~G~~eI~F~ls--rpL~~f~a~L~kdg~~E~~L~r~V~~~v~d~~-~Vtf~V~lPeaG~YgL~IYaKe~~~ 880 (1140)
++..+|.++|.|++. ..+ .+.++|..- ......+..+++.++. .+++-+.=.++|.|.|.+-+.+.+.
T Consensus 322 Y~I~dG~~~i~ftv~a~g~~-~vta~V~d~---~g~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lvv~~t~~dG 392 (478)
T PRK13211 322 YKIGDGAATLDFTVTATGDM-NVEATVYNH---DGEALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKAKPKDG 392 (478)
T ss_pred eEEcCCcEEEEEEEEeccce-EEEEEEEcC---CCCeeeeeeEEecCCceeEEEecccCCCceEEEEEEEEeCCC
Confidence 445578777777765 444 688888552 1233445556666652 4666666689999999999997754
No 41
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=21.87 E-value=36 Score=38.20 Aligned_cols=12 Identities=17% Similarity=0.069 Sum_probs=5.7
Q ss_pred cCCCCccccccc
Q psy2861 132 TYNDGKYGHFAL 143 (1140)
Q Consensus 132 ~~~~~~~~~~~~ 143 (1140)
+++=|+..||.-
T Consensus 190 feD~Gf~eSF~P 201 (232)
T TIGR00869 190 FADVGFLDSFKP 201 (232)
T ss_pred hcccCcceeecc
Confidence 444455555543
No 42
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.24 E-value=44 Score=36.17 Aligned_cols=10 Identities=50% Similarity=0.361 Sum_probs=4.0
Q ss_pred hhHHHHhhhh
Q psy2861 161 CTLEKAKKKK 170 (1140)
Q Consensus 161 ~~~~~~~~~~ 170 (1140)
...++|+||+
T Consensus 138 ~~~~kK~KKk 147 (178)
T PF10278_consen 138 KGHEKKHKKK 147 (178)
T ss_pred ccccchhhhh
Confidence 3344443333
No 43
>KOG4043|consensus
Probab=21.09 E-value=42 Score=35.80 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=4.4
Q ss_pred hhhHHHHhhhh
Q psy2861 160 VCTLEKAKKKK 170 (1140)
Q Consensus 160 ~~~~~~~~~~~ 170 (1140)
--.+-||.||+
T Consensus 171 ~e~~hKK~Kkh 181 (214)
T KOG4043|consen 171 EEGFHKKHKKH 181 (214)
T ss_pred hhcchhhhhhh
Confidence 33344444433
No 44
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=20.74 E-value=35 Score=38.10 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=7.2
Q ss_pred Cccccccccccc
Q psy2861 136 GKYGHFALGNTL 147 (1140)
Q Consensus 136 ~~~~~~~~~~~~ 147 (1140)
|+++=|-.|+.-
T Consensus 173 g~~~fWlfPNLf 184 (224)
T PF03839_consen 173 GKHGFWLFPNLF 184 (224)
T ss_pred CCCCEEeCCccc
Confidence 455666666654
No 45
>KOG2812|consensus
Probab=20.43 E-value=55 Score=38.71 Aligned_cols=11 Identities=18% Similarity=-0.049 Sum_probs=5.2
Q ss_pred Ccccccccccc
Q psy2861 109 PSLLENSIGTS 119 (1140)
Q Consensus 109 ~~~l~~~i~~~ 119 (1140)
-..+.+.|+-+
T Consensus 153 e~g~pevwg~s 163 (426)
T KOG2812|consen 153 ELGAPEVWGKS 163 (426)
T ss_pred hccchhhccCC
Confidence 33445555543
No 46
>KOG2775|consensus
Probab=20.28 E-value=35 Score=39.64 Aligned_cols=16 Identities=38% Similarity=0.671 Sum_probs=7.2
Q ss_pred hhhhCCCCChHHHhcC
Q psy2861 644 DFEELPFVRSLFFRYG 659 (1140)
Q Consensus 644 ~Fe~lP~v~p~FF~~g 659 (1140)
-|..||+...--=++|
T Consensus 328 nfgTLaFcrR~lDrlG 343 (397)
T KOG2775|consen 328 NFGTLAFCRRWLDRLG 343 (397)
T ss_pred ccccccccHHHHHHhh
Confidence 3445555544333334
Done!