RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2861
(1140 letters)
>gnl|CDD|227604 COG5279, CYK3, Uncharacterized protein involved in cytokinesis,
contains TGc (transglutaminase/protease-like) domain
[Cell division and chromosome partitioning].
Length = 521
Score = 73.4 bits (180), Expect = 3e-13
Identities = 41/171 (23%), Positives = 60/171 (35%), Gaps = 37/171 (21%)
Query: 504 YHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAGAWRFVQCNWG 563
Y LFK LC+ G+ C +I+G+ KS P D ++WN V + + V WG
Sbjct: 215 YAELFKELCNALGIPCEIIEGFLKS----PIYYTRDININHAWNIVKIDNEYYLVDTTWG 270
Query: 564 ARHLVNAKEVPKVGAKGKSDSLRHLDSAKQVLKVGAKGKSDSLRYEYDDHYFLTDPREFI 623
P D + YFL P + I
Sbjct: 271 D---------PIH-----PDQNSKSSKI-------------------NHSYFLLAPNQMI 297
Query: 624 YEFFPLQPEWQLLKTSISLRDFEELPFVRSLFFRYGLYFPDTNTKAVMYTD 674
P + +WQ +K + + LP+V +FF GL NT + D
Sbjct: 298 ATHVPEKDDWQFIKPDLDMPIVMALPWVSPVFFTLGLKLRKFNTSILHLND 348
Score = 46.5 bits (110), Expect = 7e-05
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 1073 DHYFLTDPREFIYEFFPLQPEWQLLKTSISLRDFEELPFVRSLFFRYGLYFPDTNTKAVM 1132
YFL P + I P + +WQ +K + + LP+V +FF GL NT +
Sbjct: 286 HSYFLLAPNQMIATHVPEKDDWQFIKPDLDMPIVMALPWVSPVFFTLGLKLRKFNTSILH 345
Query: 1133 YTD 1135
D
Sbjct: 346 LND 348
>gnl|CDD|214673 smart00460, TGc, Transglutaminase/protease-like homologues.
Transglutaminases are enzymes that establish covalent
links between proteins. A subset of transglutaminase
homologues appear to catalyse the reverse reaction, the
hydrolysis of peptide bonds. Proteins with this domain
are both extracellular and intracellular, and it is
likely that the eukaryotic intracellular proteins are
involved in signalling events.
Length = 68
Score = 58.9 bits (143), Expect = 5e-11
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 495 RGIKHGT-ESYHVLFKLLCSYAGLHCVVIKGYSKSAGYQPGVKFEDNRFRNSWNAVYVAG 553
K+GT + LF L G+ V+ GY K+ G++ ++W VY+ G
Sbjct: 2 LKTKYGTCGEFAALFVALLRSLGIPARVVSGYLKAPDTIGGLR--SIWEAHAWAEVYLEG 59
Query: 554 AWRFVQCNW 562
W V
Sbjct: 60 GWVPVDPTP 68
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 41.6 bits (98), Expect = 1e-04
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
K K KK KKKKKKKKKK K +
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVT 38
Score = 40.5 bits (95), Expect = 3e-04
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K K KK KKKKKKKKKK S +
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVT 38
Score = 39.7 bits (93), Expect = 5e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K KKKKKKKKKK K K++ + +
Sbjct: 16 KIDVKKKKKKKKKKNKSKEEVVTEKE 41
Score = 38.9 bits (91), Expect = 0.001
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K KKKKKKKKKK K K++ + K
Sbjct: 15 KKIDVKKKKKKKKKKNKSKEEVVTEK 40
Score = 38.9 bits (91), Expect = 0.001
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
L+ K KKKKKKKKKK K K++
Sbjct: 12 LKGKKIDVKKKKKKKKKKNKSKEE 35
Score = 38.6 bits (90), Expect = 0.002
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNK 190
KKKKKKKKKK K K++ +
Sbjct: 19 VKKKKKKKKKKNKSKEEVVTEKEE 42
Score = 35.9 bits (83), Expect = 0.013
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIAP 193
KKKKKKKKKK K K++ + +
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEKS 46
Score = 35.1 bits (81), Expect = 0.022
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K KKKKKKKK K K++ +K+ K
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEK 45
Score = 34.7 bits (80), Expect = 0.035
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
++ KKKKKKKKK K K++ +K + +
Sbjct: 17 IDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSA 48
Score = 32.8 bits (75), Expect = 0.16
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K K K KK KKKKKKK
Sbjct: 4 NVVGGKLKLKGKKIDVKKKKKKKKKKN 30
Score = 31.6 bits (72), Expect = 0.39
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 168 KKKKKKKKKKKKKKKKKKKSSNKIA 192
K K K KK KKKKKK K
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNK 31
Score = 28.2 bits (63), Expect = 6.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K KKKK K K++ +K++++KSS +
Sbjct: 24 KKKKKKNKSKEEVVTEKEEEEKSSAE 49
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 45.7 bits (109), Expect = 1e-04
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 150 IEGL--------TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
I+ L K AK+ +KK+K+K+K K KK+ + + I
Sbjct: 373 IDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNI 422
Score = 40.3 bits (95), Expect = 0.005
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E T ++A+KK+K+K+K K KK+ + K+ K
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 39.9 bits (94), Expect = 0.007
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSN 189
EK K K KK+ + K K++K S
Sbjct: 406 EKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 38.8 bits (91), Expect = 0.017
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
EK +K+K+K K KK+ + K K
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 38.8 bits (91), Expect = 0.018
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
++ +K K KK+ + K K++K S
Sbjct: 405 KEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 38.0 bits (89), Expect = 0.027
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
EK K KK+ + K K++K +S +
Sbjct: 408 EKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 36.1 bits (84), Expect = 0.095
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSN 189
++ K KK+ + K K++K ++
Sbjct: 407 KEKPKVKKRHRDTKNIGKRRKPSGTS 432
Score = 35.7 bits (83), Expect = 0.14
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
EK K KK K+ +KK+K+K K+
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKVK 413
Score = 31.5 bits (72), Expect = 2.6
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
+KK K KK K+ +KK K P
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKP 410
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 42.4 bits (100), Expect = 2e-04
Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
EKAK+KK+KKKKKKKKKKK KK++ K
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSKKAAKK 133
Score = 41.6 bits (98), Expect = 4e-04
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K KK+KKKKKKKKKKK KK K
Sbjct: 109 AKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 41.2 bits (97), Expect = 4e-04
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 158 ETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
E + K+K K+KK+KKKKKKKKKKK+S K A
Sbjct: 97 EQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAK 132
Score = 41.2 bits (97), Expect = 5e-04
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K K K+KK+KKKKKKKKKKK +
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 37.0 bits (86), Expect = 0.012
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 157 AETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
E ++ KKKKKKKKKK KK KKKK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.8 bits (70), Expect = 1.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+E+ K K+ K+K K+KK+KKKK K
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKK 122
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 42.3 bits (100), Expect = 2e-04
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 164 EK-AKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
EK AKK+ K++KKK+KKKKKKK K NK +
Sbjct: 81 EKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEK 112
Score = 38.5 bits (90), Expect = 0.004
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSS 188
T +K K++KKK+KKKKKKK KK
Sbjct: 83 TAKKRAKRQKKKQKKKKKKKAKKGNKK 109
Score = 36.6 bits (85), Expect = 0.019
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K ++K KK+ K++KKK+KKKK
Sbjct: 77 RKDEEKTAKKRAKRQKKKQKKKKKKKA 103
Score = 35.8 bits (83), Expect = 0.035
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+K K+KKKKKKK KK KK++K+ S
Sbjct: 91 QKKKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 35.4 bits (82), Expect = 0.050
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNK 190
+K KK+ K++KKK+KKKKK K
Sbjct: 80 EEKTAKKRAKRQKKKQKKKKKKKAK 104
Score = 35.0 bits (81), Expect = 0.068
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
KKK+KKKKKKK KK KK++ + +
Sbjct: 92 KKKQKKKKKKKAKKGNKKEEKEGSKSSE 119
Score = 34.6 bits (80), Expect = 0.081
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E+ KK+ K++KKK+KKKKKKK+
Sbjct: 80 EEKTAKKRAKRQKKKQKKKKKKKAKKG 106
Score = 31.6 bits (72), Expect = 1.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 162 TLEKAKKK---KKKKKKKKKKKKKKKKKSSNK 190
E+ K+K K KK+ K++KKK+KKK K
Sbjct: 71 KREEKKRKDEEKTAKKRAKRQKKKQKKKKKKK 102
Score = 29.6 bits (67), Expect = 3.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSN 189
+K KKKKK KK KK++K+ K S
Sbjct: 95 QKKKKKKKAKKGNKKEEKEGSKSSEE 120
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 40.5 bits (95), Expect = 0.002
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K KKKKK+ KK+KK+KK KK+K
Sbjct: 155 KEKKKKKEVKKEKKEKKDKKEKMVEP 180
Score = 39.7 bits (93), Expect = 0.003
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ V EK +KKKKK+ KK+KK+KK KK+ +
Sbjct: 144 EKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVE 179
Score = 39.3 bits (92), Expect = 0.005
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
E+ K+KKKKK+ KK+KK+KK KK
Sbjct: 152 EEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Score = 38.5 bits (90), Expect = 0.009
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K + V +K KK KK+K + K KKKKKK K
Sbjct: 158 KKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 34.7 bits (80), Expect = 0.13
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 158 ETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
T ++A+ ++++KK+KKKKK+ KK+K K
Sbjct: 139 TTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKK 171
Score = 32.8 bits (75), Expect = 0.56
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 140 HFALG--NTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
F G G L +ET AK +K+ + ++++KK+KKKKK K
Sbjct: 113 FFPTGYGAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKK 165
Score = 29.3 bits (66), Expect = 7.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
E K +K+ + ++++KK+KKKK K
Sbjct: 138 ETTAKVEKEAEVEEEEKKEKKKKKEVKKE 166
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 37.0 bits (86), Expect = 0.004
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFM 199
L K KKKKKKKK + K KK++ + + +FM
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFM 58
Score = 33.9 bits (78), Expect = 0.062
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
A KKKKKKKKKK + + K A
Sbjct: 20 ADLVKKKKKKKKKKAEDTAATAKAKKATA 48
Score = 33.5 bits (77), Expect = 0.083
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
E KKKKKKKKKK + + K
Sbjct: 19 EADLVKKKKKKKKKKAEDTAATAKAKKATA 48
Score = 28.5 bits (64), Expect = 4.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIAPQLV 196
K + KKKKKKKKKK + ++ +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKA 46
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 39.3 bits (92), Expect = 0.005
Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
IE + K E EK K K KKKK KKKK K K KK K
Sbjct: 71 IEKVKKEYE-----EKQKWKWKKKKSKKKKDKDKDKKDDKK 106
Score = 31.2 bits (71), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
+ K KK KK K +KK +K++ +K+
Sbjct: 95 KDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 31.2 bits (71), Expect = 2.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKS 187
+K K K KK KK K +KK +K
Sbjct: 94 KKDKDKDKKDDKKDDKSEKKDEKE 117
Score = 30.8 bits (70), Expect = 2.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKS 187
K KK K K KK KK K +KK
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKD 114
Score = 30.4 bits (69), Expect = 3.8
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 164 EKAKKKKKKKKK-KKKKKKKKKKKSSNKIAPQ 194
+K K KK KK K +KK +K+ + + +
Sbjct: 96 DKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127
Score = 30.0 bits (68), Expect = 4.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+K KK K +KK +K+ + K + K +
Sbjct: 101 KKDDKKDDKSEKKDEKEAEDKLEDLTKSYSE 131
Score = 29.7 bits (67), Expect = 6.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
+K K +KK +K+ + K + KS ++ L
Sbjct: 105 KKDDKSEKKDEKEAEDKLEDLTKSYSETLSTL 136
Score = 29.7 bits (67), Expect = 7.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
+K KK KK K +KK +K+ + +
Sbjct: 98 DKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSY 129
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 38.0 bits (89), Expect = 0.006
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 149 LIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
L + E EK K+ +K ++KK K+++K+K+K
Sbjct: 96 LRLRRERTKER---AEKEKRTRKNREKKFKRRQKEKEK 130
Score = 34.2 bits (79), Expect = 0.10
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 160 VCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ ++ +K+K+ +K ++KK K++ K
Sbjct: 98 LRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 31.1 bits (71), Expect = 1.2
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
K + + K++ +K+K+ +K ++KK K
Sbjct: 91 KRRIALRLRRERTKERAEKEKRTRKNREKKFK 122
Score = 30.7 bits (70), Expect = 1.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
NA+ L + K+KKKK+K+ KK++ + +
Sbjct: 66 KHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTK 104
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 40.5 bits (95), Expect = 0.006
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTS 205
+ + K KK KKKKKKKKK++K +++ P+ + + S
Sbjct: 268 DVSEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGS 311
Score = 36.7 bits (85), Expect = 0.071
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
+ + + ++ K KK KKKKKKKKK++K
Sbjct: 255 DDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRK 290
Score = 32.4 bits (74), Expect = 1.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
L+K+KK++KKK+ ++KK +K + A
Sbjct: 95 LKKSKKRQKKKEAERKKALLLDEKEKERAAE 125
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 38.7 bits (90), Expect = 0.006
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 156 NAETVCTLEKAKKKKKKK--KKKKKKKKKKKKKSSNK 190
++E + EK KKKK + K++KKKKK+KKKK
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 30.6 bits (69), Expect = 3.0
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKK-------KKKKKKKKKSSNKIAPQ 194
ET E K +KK KKKK KKKKK+KKK + +P+
Sbjct: 125 PLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPE 172
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 39.6 bits (93), Expect = 0.008
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K K+++KK +K+KKKKK+KKK K
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRK 409
Score = 39.2 bits (92), Expect = 0.010
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
E+ K +K+KKKKK+KKK KK+KK
Sbjct: 388 EEKKPQKRKKKKKRKKKGKKRKK 410
Score = 39.2 bits (92), Expect = 0.011
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
EK +K+KKKKK+KKK KK+KKK
Sbjct: 389 EKKPQKRKKKKKRKKKGKKRKKK 411
Score = 39.2 bits (92), Expect = 0.012
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
+ +KKKKK+KKK KK+KKK +K
Sbjct: 392 PQKRKKKKKRKKKGKKRKKKGRK 414
Score = 38.8 bits (91), Expect = 0.014
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K ++KK +K+KKKKK+KKK KK K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 38.4 bits (90), Expect = 0.019
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
+ KK +K+KKKKK+KKK KK+K
Sbjct: 387 REEKKPQKRKKKKKRKKKGKKRK 409
Score = 38.4 bits (90), Expect = 0.019
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKS 187
K+KKKKK+KKK KK+KKK +
Sbjct: 392 PQKRKKKKKRKKKGKKRKKKGRK 414
Score = 38.4 bits (90), Expect = 0.020
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
+K +K+KKKKK+KKK KK+KKK
Sbjct: 390 KKPQKRKKKKKRKKKGKKRKKKG 412
Score = 38.4 bits (90), Expect = 0.020
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 149 LIEGLTKNAETVCTL-EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
L E L K E + K KKK+++KK +K+KKKKK+K K
Sbjct: 364 LKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGK 406
Score = 38.0 bits (89), Expect = 0.025
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K +++KK +K+KKKKK+KKK K K
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKK 410
Score = 36.5 bits (85), Expect = 0.068
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
++ +KK +K+KKKKK+KKK KK+
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKR 408
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 37.2 bits (86), Expect = 0.009
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
EK KKKKKK KK KK KK KK
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 34.1 bits (78), Expect = 0.089
Identities = 16/21 (76%), Positives = 16/21 (76%)
Query: 170 KKKKKKKKKKKKKKKKKSSNK 190
K KKKKKK KK KK KKSS K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 32.5 bits (74), Expect = 0.39
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKS 187
E +K KKKKKK KK KK KK
Sbjct: 93 PPEPTEKPKKKKKKSKKTKKPKKSSK 118
Score = 32.2 bits (73), Expect = 0.48
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ +K KKKKKK KK KK KK S
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 38.1 bits (89), Expect = 0.011
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 167 KKKKKKKKKKKKKKKKKKKKS 187
KK+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRI 205
Score = 36.9 bits (86), Expect = 0.030
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 166 AKKKKKKKKKKKKKKKKKKK 185
K+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGR 204
Score = 36.9 bits (86), Expect = 0.033
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKK 186
K +K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 36.5 bits (85), Expect = 0.047
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSVVGNIV 211
KA+KK+K+K+ KKK+ +K + K + GNIV
Sbjct: 16 EQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIV 65
Score = 36.1 bits (84), Expect = 0.054
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 168 KKKKKKKKKKKKKKKKKKKSS 188
KK+K KK KKKKK KKK
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRI 205
Score = 35.7 bits (83), Expect = 0.074
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKK 185
L+K K KK KKKKK KKK +
Sbjct: 184 LKKRKDDKKNKKKKKAKKKGRIL 206
Score = 35.7 bits (83), Expect = 0.078
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 162 TLEKAKKKKKKK------KKKKKKKKKKKKKSSNK 190
+EK K +++KK K+K KK KKKKK+ K
Sbjct: 168 KVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKK 202
Score = 34.2 bits (79), Expect = 0.22
Identities = 10/28 (35%), Positives = 22/28 (78%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
LE+ ++K++++K +KK+K+K+ KK +
Sbjct: 8 LEQRRRKREQRKARKKQKRKEAKKKEDA 35
Score = 33.4 bits (77), Expect = 0.38
Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 163 LEKAKKKKKKKKKKKKKK-KKKKKKSSNKIA 192
L+KA K+K+K+KKK KK+ K++K+K K A
Sbjct: 144 LKKALKRKEKQKKKSKKEWKERKEKVEKKKA 174
Score = 33.4 bits (77), Expect = 0.38
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 164 EKAKKKK---KKKKKKKKKKKKKKKKSSNKI 191
E+ KK++ KK+K KK KKKKK K +I
Sbjct: 175 ERQKKREENLKKRKDDKKNKKKKKAKKKGRI 205
Score = 33.0 bits (76), Expect = 0.59
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKS 187
+ +K +KK+K+K+ KKK+ +KS
Sbjct: 15 REQRKARKKQKRKEAKKKEDAQKS 38
Score = 32.7 bits (75), Expect = 0.70
Identities = 8/24 (33%), Positives = 20/24 (83%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
L + +++K++++K +KK+K+K+ K
Sbjct: 7 LLEQRRRKREQRKARKKQKRKEAK 30
Score = 31.1 bits (71), Expect = 2.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKS 187
K +++K +KK+K+K+ KKK+
Sbjct: 13 RKREQRKARKKQKRKEAKKKEDAQ 36
Score = 30.7 bits (70), Expect = 2.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
+ ++K +KK+K+K+ KKK+ + S
Sbjct: 15 REQRKARKKQKRKEAKKKEDAQKSEAEEV 43
Score = 30.7 bits (70), Expect = 2.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 164 EKAKKKKKKKKKKKKKKKKKK 184
EK KK K+K+K+KKK KK+
Sbjct: 141 EKLLKKALKRKEKQKKKSKKE 161
Score = 30.7 bits (70), Expect = 3.6
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSS 188
+ ++++K +KK+K+K+ KKK+ +
Sbjct: 13 RKREQRKARKKQKRKEAKKKEDAQ 36
Score = 29.6 bits (67), Expect = 6.6
Identities = 7/27 (25%), Positives = 20/27 (74%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNKIA 192
++++K++++K +KK+K+K+ + A
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDA 35
Score = 29.6 bits (67), Expect = 7.6
Identities = 7/27 (25%), Positives = 21/27 (77%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+++++K++++K +KK+K+K++ K
Sbjct: 6 ALLEQRRRKREQRKARKKQKRKEAKKK 32
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 37.5 bits (88), Expect = 0.011
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
KA +K +KK +K K K +KKK + P+L
Sbjct: 69 KAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 36.7 bits (86), Expect = 0.023
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKS 187
EKA+KK +K K K +KKK KK++
Sbjct: 71 WEKAEKKAEKAKAKAEKKKAKKEEP 95
Score = 36.0 bits (84), Expect = 0.034
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+K K +K +KK +K K K +K K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAK 91
Score = 35.6 bits (83), Expect = 0.055
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKK 186
L+ +K +KK +K K K +KKK K
Sbjct: 67 ELKAWEKAEKKAEKAKAKAEKKKAK 91
Score = 34.4 bits (80), Expect = 0.12
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
L+K + K +K +KK +K K K +
Sbjct: 62 LLDKKELKAWEKAEKKAEKAKAKAEKKKA 90
Score = 33.3 bits (77), Expect = 0.27
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
EK +K K K +KKK KK++ K
Sbjct: 75 EKKAEKAKAKAEKKKAKKEEPKP 97
Score = 31.0 bits (71), Expect = 1.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIA 192
KK+ K +K +KK +K K K+ K A
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKA 90
Score = 29.8 bits (68), Expect = 4.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
L K+ K +K +KK +K K K K
Sbjct: 62 LLDKKELKAWEKAEKKAEKAKAKAEKKKA 90
Score = 29.8 bits (68), Expect = 4.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 164 EKAKKKKKKKKKKKKKKKKK 183
EKAK K +KKK KK++ K +
Sbjct: 79 EKAKAKAEKKKAKKEEPKPR 98
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 35.7 bits (83), Expect = 0.012
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 142 ALGNTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKK----KKK 184
LG + ++ ++ ++KKKKKKK KKK K +KK
Sbjct: 15 GLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKK 61
Score = 31.5 bits (72), Expect = 0.41
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKS 187
K ++ ++ ++KKKKKKK KKKS
Sbjct: 30 SKVRRISQRNRRKKKKKKKLKKKS 53
Score = 31.1 bits (71), Expect = 0.53
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 167 KKKKKKKKKKKKKKKKKKKK 186
++ ++KKKKKKK KKK K
Sbjct: 35 ISQRNRRKKKKKKKLKKKSK 54
Score = 30.3 bits (69), Expect = 1.0
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 142 ALGNTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
L N LG EG ++ E + + + ++ ++KKKKKKK KKK
Sbjct: 11 QLPNGLG-EEG-EEDDEQIDASKVRRISQRNRRKKKKKKKLKKKS 53
Score = 30.0 bits (68), Expect = 1.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 149 LIEGLTKNAETVCTLEKAKKK--KKKKKKKKKKKKKKKKKSS 188
L GL + E A K ++ ++KKKKKKK KK S
Sbjct: 12 LPNGLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKS 53
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 34.9 bits (81), Expect = 0.016
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
EK + K+ KK+ KK +KKK+K
Sbjct: 10 EKLRAKRAKKRAAKKAARKKKRK 32
Score = 32.6 bits (75), Expect = 0.11
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 165 KAKKKKKKKKKKKKKKKKKKK 185
+AK+ KK+ KK +KKK+K
Sbjct: 13 RAKRAKKRAAKKAARKKKRKL 33
Score = 32.2 bits (74), Expect = 0.15
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
+ K+ KK+ KK +KKK+K
Sbjct: 11 KLRAKRAKKRAAKKAARKKKRKL 33
Score = 31.8 bits (73), Expect = 0.21
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
K KK+ KK +KKK+K K
Sbjct: 14 AKRAKKRAAKKAARKKKRKLIFK 36
Score = 31.8 bits (73), Expect = 0.23
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
++AKK+ KK +KKK+K K+
Sbjct: 15 KRAKKRAAKKAARKKKRKLIFKR 37
Score = 30.7 bits (70), Expect = 0.56
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKK 186
K + K+ KK+ KK +KKK
Sbjct: 9 NEKLRAKRAKKRAAKKAARKKK 30
Score = 30.3 bits (69), Expect = 0.72
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNK 190
+ K+ KK+ KK +KKK+
Sbjct: 11 KLRAKRAKKRAAKKAARKKKRKLIF 35
Score = 29.9 bits (68), Expect = 1.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
L+K K+ +K + K+ KK+ KK
Sbjct: 3 LKKRKRNEKLRAKRAKKRAAKKAA 26
Score = 29.9 bits (68), Expect = 1.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+L K +K+ +K + K+ KK+ KK + K
Sbjct: 1 SLLKKRKRNEKLRAKRAKKRAAKKAARKK 29
Score = 29.5 bits (67), Expect = 1.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
+K KK +KKK+K K+ +K
Sbjct: 17 AKKRAAKKAARKKKRKLIFKRAEK 40
Score = 29.1 bits (66), Expect = 2.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
K +K + K+ KK+ KK +K K+
Sbjct: 7 KRNEKLRAKRAKKRAAKKAARKKKRKLI 34
Score = 28.7 bits (65), Expect = 3.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
KK+K+ +K + K+ KK+ K + + + +IF
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIF 35
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 35.7 bits (83), Expect = 0.019
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K K + KKKKK+K KKK
Sbjct: 36 ELKQKADEGNNSGKKKKKRKAKKKRDEAGPAS 67
Score = 33.0 bits (76), Expect = 0.15
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
EK K+K + KKKKK+K +
Sbjct: 34 EKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 29.9 bits (68), Expect = 1.9
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 16/47 (34%)
Query: 161 CTLEKAKKKKKKKKKKKKKKKK----------------KKKKSSNKI 191
E KKKKK+K KKK+ +KKK S KI
Sbjct: 40 KADEGNNSGKKKKKRKAKKKRDEAGPASTAAEAVKKMLQKKKFSKKI 86
Score = 29.5 bits (67), Expect = 2.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
++ K+ K+K + KKKKK+ + K
Sbjct: 32 QEEKELKQKADEGNNSGKKKKKRKAKK 58
Score = 29.1 bits (66), Expect = 3.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E+ + K+K + KKKKK+K+ K
Sbjct: 33 EEKELKQKADEGNNSGKKKKKRKAKKK 59
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 36.4 bits (84), Expect = 0.019
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIA 192
+++ KK KKK++KKKKKKK + +A
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKNLA 124
Score = 34.1 bits (78), Expect = 0.12
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKK 186
+AKK KKK++KKKKKKK K
Sbjct: 102 QAKKLKKKREKKKKKKKGAKNL 123
Score = 33.3 bits (76), Expect = 0.19
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
+ + + KK KKK++KKKKKKK K
Sbjct: 98 MNQRQAKKLKKKREKKKKKKKGAK 121
Score = 33.3 bits (76), Expect = 0.20
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKK 186
+ KK KKK++KKKKKKK K
Sbjct: 101 RQAKKLKKKREKKKKKKKGAKN 122
Score = 29.8 bits (67), Expect = 2.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKK 185
K KKK++KKKKKKK K
Sbjct: 103 AKKLKKKREKKKKKKKGAKNLA 124
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 36.7 bits (85), Expect = 0.026
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
K ++K+ K KK+KK+KK+KK + K+A
Sbjct: 103 SKETEEKEAIKAKKEKKEKKEKKVAEKLA 131
Score = 35.1 bits (81), Expect = 0.070
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLV 196
+K K+ ++K+ K KK+KK+K K+A +L
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLA 131
Score = 34.4 bits (79), Expect = 0.16
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 144 GNTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKK 184
G ++ L ++ + + E +K+ K KK+KK+KK+KK
Sbjct: 85 GYSINLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 33.6 bits (77), Expect = 0.28
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
EK +K+ K+ ++K+ K KK+K K
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKK 122
Score = 31.3 bits (71), Expect = 1.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E+ + K KK+KK+KK+KK +K + K
Sbjct: 107 EEKEAIKAKKEKKEKKEKKVAEKLAKK 133
Score = 30.9 bits (70), Expect = 1.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
K E ++ K+KK+KK+KK +K KKK +
Sbjct: 104 KETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKN 141
Score = 30.9 bits (70), Expect = 2.2
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSV 206
E+++K++K+ K+ ++K+ K K K + + +
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKS 135
Score = 29.0 bits (65), Expect = 7.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKKKKKK--KKKKKKSSNKI 191
E K ++A K KK+KK+KK+KK +K KK S K
Sbjct: 95 SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKT 138
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 37.0 bits (86), Expect = 0.035
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
E+ KKKK+ K K K+ KKKKK A
Sbjct: 82 ERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSP 113
Score = 31.2 bits (71), Expect = 2.5
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 155 KNAETVCTLEKAKKKKKKK-------KKKKKKKKKKKKKSSNK 190
K +T E KKKKKK K + KKK ++ S
Sbjct: 88 KRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWA 130
Score = 30.4 bits (69), Expect = 4.4
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
L++ + ++KK + K +K+K+KKK+
Sbjct: 157 LKEREIRRKKIQAKARKRKEKKKE 180
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. This
domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 34.1 bits (79), Expect = 0.055
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNK 190
++KKK+KK+ K + K+ KK + +
Sbjct: 60 SRKKKEKKEVKAESKRYNAKKLTLE 84
Score = 30.2 bits (69), Expect = 1.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 164 EKAKKKKKKKKKKKKKKKKKK 184
+ KK+KK+ K + K+ KK
Sbjct: 60 SRKKKEKKEVKAESKRYNAKK 80
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 36.2 bits (84), Expect = 0.062
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
EKA K KKKK K K K + +
Sbjct: 197 AEKAAKGGKKKKGKAKAKLNVGGANDDDDD 226
Score = 35.4 bits (82), Expect = 0.11
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
EK K +K K KKKK K K K +
Sbjct: 193 EKLKAEKAAKGGKKKKGKAKAKLNVGG 219
Score = 34.2 bits (79), Expect = 0.24
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSS 188
KAK KK K K ++K+K K++K
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEE 78
Score = 34.2 bits (79), Expect = 0.30
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
EKAK K K KK K K ++K+ + +
Sbjct: 48 EKAKVAAKAKAKKALKAKIEEKEKAKREK 76
Score = 33.9 bits (78), Expect = 0.33
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E + K + T+ L K K +K K KKKK K K N
Sbjct: 177 SEDIKKVSSTLNVLINEKLKAEKAAKGGKKKKGKAKAKLNV 217
Score = 33.9 bits (78), Expect = 0.35
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSS 188
+ KK K K ++K+K K++K+
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEEK 79
Score = 33.1 bits (76), Expect = 0.60
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKK 185
K K K K ++K+K K++K++K
Sbjct: 48 EKAKVAAKAKAKKALKAKIEEKEKAKREKEEK 79
Score = 32.7 bits (75), Expect = 0.87
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ E + K KK K K ++K+K K++ K
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEK 79
Score = 31.9 bits (73), Expect = 1.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E+ +++K K K K KK K K K
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAKIEEK 69
Score = 31.2 bits (71), Expect = 2.4
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
K K ++K+K K++K++K + + P
Sbjct: 61 ALKAKIEEKEKAKREKEEKGLRELEEDTP 89
Score = 30.4 bits (69), Expect = 4.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
E +K+++K K K K KK K
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALK 63
Score = 30.0 bits (68), Expect = 5.4
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
++ K+++K K K K KK K +
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAKIEE 68
Score = 29.6 bits (67), Expect = 8.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKK 186
KA K K ++K+K K++K++K
Sbjct: 60 KALKAKIEEKEKAKREKEEKGL 81
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor involved
in ribosome biogenesis.
Length = 112
Score = 34.0 bits (78), Expect = 0.088
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ K K++KKK K+ +K++K++KK +
Sbjct: 46 VSKKKQRKKKPKRLTRKQRKRQKKGLER 73
Score = 31.7 bits (72), Expect = 0.58
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMN 200
KKK++KKK K+ +K++K K + I +
Sbjct: 45 GVSKKKQRKKKPKRLTRKQRKRQKKGLERAEIVTD 79
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 36.0 bits (84), Expect = 0.088
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKK 185
KA+KKK+K++ K K K K +
Sbjct: 69 WHKAQKKKEKQEAKAAKAKSKPR 91
Score = 36.0 bits (84), Expect = 0.10
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+K K K +KKK+K++ K K+ +K
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 33.7 bits (78), Expect = 0.51
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
L+K + K K +KKK+K++ K +
Sbjct: 60 LLDKKELKAWHKAQKKKEKQEAKAAKAKS 88
Score = 33.7 bits (78), Expect = 0.53
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKS 187
L+ K +KKK+K++ K K K K
Sbjct: 66 LKAWHKAQKKKEKQEAKAAKAKSKP 90
Score = 31.7 bits (73), Expect = 2.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
L K+ K K +KKK+K++ K + K P+L
Sbjct: 59 ALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPRL 92
Score = 30.2 bits (69), Expect = 6.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
KK+ K K +KKK+K++ + K + +F
Sbjct: 58 AALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLF 93
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 35.8 bits (83), Expect = 0.10
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSS 188
LE+ + KKKKKKKKKK KK SS
Sbjct: 176 LEEERAKKKKKKKKKKTKKNNATGSS 201
Score = 35.4 bits (82), Expect = 0.13
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 156 NAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E V L+ ++++ KKKKKKKKKK KK ++
Sbjct: 165 TEEEVELLKARLEEERAKKKKKKKKKKTKKNNATG 199
Score = 35.0 bits (81), Expect = 0.18
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
KA+ ++++ KKKKKKKKKK KK++ +
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNNATGSSA 202
Score = 35.0 bits (81), Expect = 0.18
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 163 LEKAKKK-KKKKKKKKKKKKKKKKKSSNKIAPQL 195
+E K + ++++ KKKKKKKKKK K +N
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSA 202
Score = 33.1 bits (76), Expect = 0.70
Identities = 16/58 (27%), Positives = 21/58 (36%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSVVGNIVSFRVHAPAAA 221
K KKKKKKKK KK +++ A + G + R AP
Sbjct: 181 AKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDNE 238
Score = 29.6 bits (67), Expect = 7.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+K KKKKKKK KK + + + P
Sbjct: 181 AKKKKKKKKKKTKKNNATGSSAEATVSSAVPT 212
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 36.7 bits (84), Expect = 0.11
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ K AE +A K + + + + ++K +++ K
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Score = 34.3 bits (78), Expect = 0.49
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
K AE +A + + ++K + +KKK+ + K A
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
Score = 32.8 bits (74), Expect = 1.6
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K A E + + ++K + +KKK K
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Score = 32.0 bits (72), Expect = 2.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKK----KKKKKKKKKKKSSNKIAPQ 194
+ K AE ++AKKK ++ KK KKK ++ KK + + K A +
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
Score = 32.0 bits (72), Expect = 2.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKKK---KKKKKKKKKS 187
+ K AE ++AKKK ++ KKK KK KKK+
Sbjct: 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420
Score = 31.6 bits (71), Expect = 3.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKK----KKKKKKKKKKSSNK 190
+ K AE ++AKKK ++ KKK KKK ++ KK +
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348
Score = 31.6 bits (71), Expect = 3.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 163 LEKAKKKKKKKKKKKKKKKKK----KKKSSNK 190
E A++K + +KKK++ KKK KKK+ K
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
Score = 30.9 bits (69), Expect = 5.2
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E K A+ + KK + K + + + +++ +
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
Score = 30.5 bits (68), Expect = 6.5
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKK---KKKKKKKKKKS 187
E K AE ++AKKK ++ KK KKK ++ KKK+
Sbjct: 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1499
Score = 30.5 bits (68), Expect = 6.6
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+ AKKK ++ KK + K + + ++++
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
Score = 30.1 bits (67), Expect = 9.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKKKKKKKK----KKKKSSNKIAPQL 195
E K A+ + AKKK + KKK ++KKK KKK K A +
Sbjct: 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 34.3 bits (79), Expect = 0.11
Identities = 8/34 (23%), Positives = 22/34 (64%)
Query: 153 LTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
L+++ + + +K K +K +KK K++ + +K++
Sbjct: 24 LSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQA 57
Score = 30.4 bits (69), Expect = 2.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
+K + + + K K KKK K +K +KK K++
Sbjct: 17 SKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQ 49
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 36.3 bits (85), Expect = 0.11
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
LEK +K KKKKKKK K K K + S ++
Sbjct: 679 LEKIQKPKKKKKKKPKTVKPKPRTVSLEL 707
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 35.1 bits (81), Expect = 0.14
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
EK K +KK KK K K K K K K K P
Sbjct: 86 EKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Score = 31.7 bits (72), Expect = 1.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K K K +KK KK K K K K K K+ PQ
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQ 114
Score = 30.9 bits (70), Expect = 3.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ K KK K K K K K K K K K
Sbjct: 90 PEKKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Score = 29.8 bits (67), Expect = 7.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
+K KK K K K K K K K K + K P
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKPQPKPKKPP 121
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 34.9 bits (81), Expect = 0.14
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSVVGNIVS 212
EK K ++++K K K +KK+K + K PQ +I + VG V
Sbjct: 127 EKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI-SELTVGQAVK 174
Score = 33.4 bits (77), Expect = 0.48
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K+K ++++K K K +KK+ P+
Sbjct: 125 AGEKEKAPRRERKPKPKAPRKKRKPRAQKPE 155
Score = 32.6 bits (75), Expect = 0.75
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
E A +K+K ++++K K K +K A
Sbjct: 123 EAAGEKEKAPRRERKPKPKAPRKKRKPRAQ 152
Score = 32.6 bits (75), Expect = 0.86
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVI 197
K E EKA ++++K K K +KK+K + + V
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVS 162
Score = 30.7 bits (70), Expect = 3.8
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
++AKK++ +K+K ++++K K
Sbjct: 117 QQAKKREAAGEKEKAPRRERKPKPKAP 143
Score = 30.3 bits (69), Expect = 4.6
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ AE +A +K+K ++++K K K + K Q
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQ 152
Score = 30.3 bits (69), Expect = 5.0
Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 162 TLEKAK-----KKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
LE+AK ++ +++ KK++ +K+K + P+
Sbjct: 102 QLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPK 139
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 34.5 bits (80), Expect = 0.15
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 167 KKKKKKKKKKKKKKKKKKKK 186
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARK 33
Score = 34.1 bits (79), Expect = 0.22
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVI 197
K K KK KK+K+K++K+ +K +
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAA 46
Score = 33.7 bits (78), Expect = 0.24
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 164 EKAKKKKKKKKKKKKKKKKKK 184
+KAKK KK+K+K++K+ +K
Sbjct: 15 KKAKKAKKEKRKQRKQARKGA 35
Score = 33.0 bits (76), Expect = 0.47
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 166 AKKKKKKKKKKKKKKKKKKKK 186
KKK KK KK+K+K++K+ +
Sbjct: 12 VDKKKAKKAKKEKRKQRKQAR 32
Score = 33.0 bits (76), Expect = 0.48
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
L KK KK KK+K+K++K+ +K
Sbjct: 11 LVDKKKAKKAKKEKRKQRKQARKG 34
Score = 30.3 bits (69), Expect = 3.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKK 185
+K KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 34.2 bits (79), Expect = 0.17
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKK 184
LEK K K++K+++ ++K+K+
Sbjct: 124 LEKELAKLKREKRRENERKQKE 145
Score = 33.0 bits (76), Expect = 0.42
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
K+ K K++K+++ ++K+K+
Sbjct: 123 LLEKELAKLKREKRRENERKQKE 145
Score = 32.3 bits (74), Expect = 0.69
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
E AK K++K+++ ++K+K+ K+ +
Sbjct: 127 ELAKLKREKRRENERKQKEILKEQMKML 154
Score = 31.1 bits (71), Expect = 1.8
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 168 KKKKKKKKKKKKKKKKKKKSSNK 190
K+ K K++K+++ ++K+K K
Sbjct: 126 KELAKLKREKRRENERKQKEILK 148
Score = 29.9 bits (68), Expect = 4.2
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
++ K K++K+++ ++K+K+ K
Sbjct: 126 KELAKLKREKRRENERKQKEILK 148
Score = 29.2 bits (66), Expect = 8.0
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKK 185
L K K++K+++ ++K+K+ K++
Sbjct: 128 LAKLKREKRRENERKQKEILKEQ 150
Score = 28.8 bits (65), Expect = 9.1
Identities = 5/26 (19%), Positives = 16/26 (61%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIA 192
+ +K+ K K++K+++ ++ +I
Sbjct: 122 ELLEKELAKLKREKRRENERKQKEIL 147
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 35.6 bits (82), Expect = 0.17
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 161 CTLEKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
C L +KKKKKKK K+KKKKK +++S +I
Sbjct: 677 CCLCCGSRKKKKKKKSKEKKKKKNREASKQI 707
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 35.2 bits (81), Expect = 0.18
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 148 GLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
++EGL K +K K KKK KK KKK+ K+ K + +
Sbjct: 131 SIMEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEES 175
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 33.8 bits (77), Expect = 0.19
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKI 191
KKKK+K +KK K KKK++K + KI
Sbjct: 27 KKKKEKVSEKKGKSKKKEEKPNGKI 51
Score = 31.9 bits (72), Expect = 0.90
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+K+ KKKK+K +KK K KKK++ N P+
Sbjct: 23 QKSDKKKKEKVSEKKGKSKKKEEKPNGKIPE 53
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 33.4 bits (77), Expect = 0.23
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKK 186
L+K K+++ KKK++K K K KKK
Sbjct: 113 KLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 33.0 bits (76), Expect = 0.23
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 144 GNTLGLIEGLTK---NAETVCTLEKAKKKKKKKKKKKKKK---------KKKKKKSSNKI 191
GN I GL K + CT + +++ K ++K+++ + + K ++KI
Sbjct: 40 GNQ-HRIAGLEKALKEVQAHCTDAGLRAERQAKVEEKEQEVAEREQELKEAQAKGDADKI 98
Query: 192 A 192
Sbjct: 99 E 99
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 32.6 bits (74), Expect = 0.23
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
L K KK +K K K KKK KK + A + V
Sbjct: 6 QLSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTV 42
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 35.0 bits (80), Expect = 0.25
Identities = 8/25 (32%), Positives = 20/25 (80%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSS 188
++ +K K++KKK++K+K+ +++ S
Sbjct: 92 QRLEKDKREKKKREKEKRGRRRHHS 116
Score = 33.9 bits (77), Expect = 0.55
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 155 KNAETVCTLEK------AKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+NAET + EK KK KK KKK+KK+K+K++ K K
Sbjct: 179 RNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 33.5 bits (76), Expect = 0.77
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+K+ K KKKK++K+K++KKKKKK +
Sbjct: 275 KKSPKHKKKKQRKEKEEKKKKKKHHHHRCHH 305
Score = 32.7 bits (74), Expect = 1.2
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKK---KSSNKIAP 193
LEK K++KKK++K+K+ +++ +S IAP
Sbjct: 94 LEKDKREKKKREKEKRGRRRHHSLGTESDEDIAP 127
Score = 32.0 bits (72), Expect = 2.3
Identities = 8/27 (29%), Positives = 20/27 (74%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E+ +++ +K K++KKK++K+K+ +
Sbjct: 87 ERRHRQRLEKDKREKKKREKEKRGRRR 113
Score = 31.6 bits (71), Expect = 2.9
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K+AE T + K KKKK++K+K++KKKKKK ++
Sbjct: 267 KDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 31.2 bits (70), Expect = 3.8
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+K KKK+KK+K+K++ K KKK+ K
Sbjct: 200 KKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 30.0 bits (67), Expect = 8.5
Identities = 8/28 (28%), Positives = 21/28 (75%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
LE+ ++ +++ +K K++KKK++K+ +
Sbjct: 84 LEEERRHRQRLEKDKREKKKREKEKRGR 111
Score = 30.0 bits (67), Expect = 8.5
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ GL + + V E+ + +++ +K K++KKK++K+K +
Sbjct: 72 VPGLPMSDQYVKLEEERRHRQRLEKDKREKKKREKEKRGRR 112
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 32.8 bits (75), Expect = 0.32
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 143 LGNTLGLIEGLTKNAETVCTLEKAKKKKKK-----KKKKKKKKKKKKKKSS 188
L L + K + K K+KK + KK KK+++ SS
Sbjct: 57 LSQQLQQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSSSS 107
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 34.2 bits (79), Expect = 0.33
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K + KKKK K+ K K KK +
Sbjct: 254 SKEEIKKKKPKESKGVKALKKVVAKGM 280
Score = 34.2 bits (79), Expect = 0.34
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
E+ KKKK K+ K K KK K KI
Sbjct: 256 EEIKKKKPKESKGVKALKKVVAKGMKKID 284
Score = 33.5 bits (77), Expect = 0.62
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 146 TLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
T +E AE ++ KKKK K+ K K KK K
Sbjct: 237 TEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMK 281
Score = 33.1 bits (76), Expect = 0.81
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 149 LIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
E + AE+ ++ K++ KKKK K+ K K K
Sbjct: 236 ETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALK 273
Score = 31.9 bits (73), Expect = 1.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
+ K+K K++ KKKK K+ K K+ K+
Sbjct: 249 EKKRKSKEEIKKKKPKESKGVKALKKVVA 277
Score = 31.1 bits (71), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
EK +K K++ KKKK K+ K K +A
Sbjct: 249 EKKRKSKEEIKKKKPKESKGVKALKKVVA 277
Score = 31.1 bits (71), Expect = 3.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+A+KK+K K++ KKKK K+ K
Sbjct: 245 ESRAEKKRKSKEEIKKKKPKESKGVKALK 273
Score = 30.4 bits (69), Expect = 5.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSS 188
K K+ K K KK K KK S
Sbjct: 262 KPKESKGVKALKKVVAKGMKKIDS 285
Score = 29.6 bits (67), Expect = 8.8
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
K +K K+ K K KK K KK
Sbjct: 250 KKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 33.1 bits (76), Expect = 0.43
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIA 192
KK K K+ +K + KKKKKK N IA
Sbjct: 86 SKKAKGKRSRKNQTKKKKKKDDNPIA 111
Score = 29.2 bits (66), Expect = 7.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKK 185
E +KK K K+ +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
>gnl|CDD|150240 pfam09495, DUF2462, Protein of unknown function (DUF2462). This
protein is highly conserved, but its function is
unknown. It can be isolated from HeLa cell nucleoli and
is found to be homologous with Leydig cell tumour
protein whose function is unknown.
Length = 82
Score = 31.2 bits (71), Expect = 0.45
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK-IAP 193
K K K K KKK+K KK+ + I P
Sbjct: 7 KVKAKGPAAVKAGKKKQKGPKKAGPRVIKP 36
>gnl|CDD|221161 pfam11661, DUF2986, Protein of unknown function (DUF2986). This
family of proteins has no known function.
Length = 44
Score = 30.3 bits (69), Expect = 0.46
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 172 KKKKKKKKKKKKKKKSSNKIAP 193
+KKK +K KKK KK++ K+ P
Sbjct: 3 RKKKINQKLKKKAKKANAKLHP 24
Score = 29.6 bits (67), Expect = 0.65
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNK 190
KKK +K KKK KK K SNK
Sbjct: 4 KKKINQKLKKKAKKANAKLHPSNK 27
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 33.3 bits (76), Expect = 0.49
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 159 TVCTLEKAKKKKKKKKKKKKKKKKKKKKS 187
+EK KK K KK K K KK + KKK+
Sbjct: 85 ATTAVEKKKKGKSKKNKLKGKKDEDKKKA 113
Score = 31.3 bits (71), Expect = 1.9
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 130 PSTYNDGKYGHF---ALGNTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
Y DG H + G I K A T +K K KK K K KK + KKK +
Sbjct: 56 NFNYGDGDNSHDYEVLVTGNTG-ISWRRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Query: 187 S 187
Sbjct: 115 E 115
Score = 31.0 bits (70), Expect = 2.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 159 TVCTLEKAKKKKKKKKKKKKKKKKKKKKSS 188
T +K K K KK K K KK + KKK
Sbjct: 86 TTAVEKKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 29.8 bits (67), Expect = 7.0
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 169 KKKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
KKKK K KK K K KK + K F
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREGWNNF 120
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 32.8 bits (75), Expect = 0.49
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
E+ + K + K+KKK++ K + K P+
Sbjct: 110 EQEDPPETKTESKEKKKREVPKPKTEKEKPK 140
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 31.5 bits (72), Expect = 0.50
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
K ++K +++++ K+ K K+++ K+
Sbjct: 3 RKEEEKAQREEELKRLKNLKREEIEEKLE 31
Score = 29.5 bits (67), Expect = 2.4
Identities = 6/22 (27%), Positives = 16/22 (72%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKK 186
K +K+++K +++++ K+ K K
Sbjct: 1 KERKEEEKAQREEELKRLKNLK 22
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 32.3 bits (74), Expect = 0.57
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
KA+K+ K ++KK + K+K K K
Sbjct: 107 KARKELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 33.9 bits (78), Expect = 0.64
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 152 GLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
G N E KK K K KK +K KK + KIA
Sbjct: 758 GKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIA 798
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 33.6 bits (77), Expect = 0.66
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 157 AETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTS 205
AE KA + K +K K +K ++ K A ++ +
Sbjct: 221 AEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVDDLFGGLDSG 269
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 33.7 bits (77), Expect = 0.70
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K +K KKK K KKKKK S+K
Sbjct: 121 KTEKLKKKITVNKSTNKKKKKVLSSK 146
Score = 32.1 bits (73), Expect = 1.9
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Query: 135 DGKYGHFALGNTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
FA + L+ E + K KKKKK K + K N
Sbjct: 100 KNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKS 159
Query: 195 LVIFMNIGTTSV 206
+ I ++
Sbjct: 160 ISI---HSPLTI 168
>gnl|CDD|132855 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like phospholipase.
Patatin is a storage protein of the potato tuber that
shows Phospholipase A2 activity (PLA2; EC 3.1.1.4).
Patatin catalyzes the nonspecific hydrolysis of
phospholipids, glycolipids, sulfolipids, and mono- and
diacylglycerols, thereby showing lipid acyl hydrolase
activity. The active site includes an oxyanion hole with
a conserved GGxR motif; it is found in almost all the
members of this family. The catalytic dyad is formed by a
serine and an aspartate. Patatin belongs to the
alpha-beta hydrolase family which is identified by a
characteristic nucleophile elbow with a consensus
sequence of Sm-X-Nu-Sm (Sm = small residue, X = any
residue and Nu = nucleophile). Members of this family
have been found also in vertebrates. This family includes
subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta)
like phospholipases from human as well as the Pat17
isozyme from Solanum cardiophyllum.
Length = 309
Score = 33.0 bits (76), Expect = 0.70
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 967 RFEFKSPACKASAVTTTPWDMIKEVWRLNSYMHRINPSIEDKC 1009
E + CK V T D+ + RL SY + PS+
Sbjct: 123 LDEGEEDGCKV-FVCATDKDVTGKAVRLRSYPSKDEPSLYKNA 164
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 33.5 bits (77), Expect = 0.71
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
EKA K +K K ++ +KK KK K+A
Sbjct: 344 EKATAKGAQKVKNRRARKKAKKARLAKVA 372
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 33.3 bits (76), Expect = 0.73
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K K + K+++K+K++ K++K K P+
Sbjct: 95 AKEPKNESGKEEEKEKEQVKEEKKKKKEKPK 125
Score = 32.9 bits (75), Expect = 1.0
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K ++K+K++ K++KKKKK+K K K
Sbjct: 103 GKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Score = 32.2 bits (73), Expect = 2.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
E+ +K++ K++KKKKK+K K++ K +
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 31.8 bits (72), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+++K+K++ K++KKKKK+K +
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132
Score = 31.4 bits (71), Expect = 2.8
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ +K+K++ K++KKKKK+K K+ P+
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPK 134
Score = 30.6 bits (69), Expect = 4.8
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 164 EKAKKKKKKKKK-----KKKKKKKKKKKSSNKIAPQ 194
EK K+K+KK ++ ++KK+++ + KS K P+
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPK 180
Score = 30.6 bits (69), Expect = 5.7
Identities = 8/27 (29%), Positives = 20/27 (74%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
++ K+K+ K+K+K+K+KK ++ ++
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPRDR 160
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required
for growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 30.3 bits (69), Expect = 0.83
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 165 KAKKKKKKKKKKKKKK---KKKKKK 186
K + +K +K+ KK K KKKK
Sbjct: 9 KVAEHHRKLRKEAKKNPTWKSKKKK 33
Score = 30.3 bits (69), Expect = 1.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ K +KK + +K +K+ KK + K
Sbjct: 3 RYKIEKKVAEHHRKLRKEAKKNPTWK 28
Score = 29.9 bits (68), Expect = 1.3
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 164 EKAKKKKKKKKKKKKK--KKKKKKKSSNKIAPQ 194
K +KK + +K +K KK KS K P
Sbjct: 4 YKIEKKVAEHHRKLRKEAKKNPTWKSKKKKDPG 36
Score = 28.8 bits (65), Expect = 3.8
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 168 KKKKKKKKKKKKKKKKKKKSSNK 190
+ + K +KK + +K +K + K
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKK 23
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 32.0 bits (73), Expect = 0.86
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNK 190
KKKK + K +K+ K+K K
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDRKK 26
Score = 31.3 bits (71), Expect = 1.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIAP 193
+KKKK + K +K+ K+ K
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKI 28
Score = 30.5 bits (69), Expect = 3.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+ K +K+ K+K +KKK N I
Sbjct: 9 SSNYKVNRKRLKRKDRKKKINIIGNPI 35
Score = 30.1 bits (68), Expect = 4.6
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVI 197
K K + K +K+ K+K +K I +I
Sbjct: 4 KKKNRSSNYKVNRKRLKRKDRKKKINIIGNPII 36
Score = 28.9 bits (65), Expect = 9.5
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 165 KAKKKKKKKKKKKKKKKKKK--KKSSNKI 191
K KK + K +K+ K+K KK N I
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDRKKKINII 31
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 32.7 bits (75), Expect = 0.90
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 157 AETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
T + ++K+K KK KK KK+K P
Sbjct: 215 VPTPQSSSPSRKRKAPKKVAKKVAAAKKRKQKRSPPP 251
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 33.0 bits (76), Expect = 0.94
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKK 186
+EKA+KK++++KK+KKKK KK
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKK 439
Score = 33.0 bits (76), Expect = 1.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 152 GLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ KK++++KK+KKKK KKK +
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEE 444
Score = 32.6 bits (75), Expect = 1.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 142 ALGNTLGLIEGLT--KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
L T IE LT K A K +KK++++KK+KKKK + +
Sbjct: 391 FLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEE 445
Score = 31.8 bits (73), Expect = 2.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
E+ KK+KKKK KKK++++++ K
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEE 453
Score = 31.0 bits (71), Expect = 4.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K + V EK ++++KK+KKKK KKK++ +
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEE 446
Score = 29.9 bits (68), Expect = 8.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
EK KK KKK+++++++K+KK K
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKEEEK 455
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 33.2 bits (77), Expect = 0.96
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 149 LIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
+E L + E + L A K KK K +K K+
Sbjct: 810 ALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQ 847
Score = 32.8 bits (76), Expect = 1.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSS 188
KA K +K K++ +K K++
Sbjct: 836 KAAVKFSRKTKQQYVASEKDGKAT 859
Score = 32.8 bits (76), Expect = 1.2
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
A K KK K +K +A
Sbjct: 824 LADAPAKDPAGKKAAVKFSRKTKQQYVAS 852
Score = 32.5 bits (75), Expect = 1.9
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
AK KK K +K K++ +++
Sbjct: 828 PAKDPAGKKAAVKFSRKTKQQYVASEKDG 856
Score = 32.1 bits (74), Expect = 2.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
+ K KK K +K K++
Sbjct: 826 DAPAKDPAGKKAAVKFSRKTKQQ 848
Score = 31.7 bits (73), Expect = 2.8
Identities = 8/34 (23%), Positives = 10/34 (29%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLV 196
+ + K KK K S K Q V
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYV 850
Score = 30.9 bits (71), Expect = 4.5
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
A KK K +K K++ + K
Sbjct: 832 PAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 30.5 bits (70), Expect = 5.7
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ KK K +K K++ +
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASEKDG 856
Score = 30.1 bits (69), Expect = 9.0
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 157 AETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
AE L K KK K +K+ +
Sbjct: 815 AEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQ 848
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 32.6 bits (74), Expect = 1.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSN 189
EK K KKK K KK KKK+ K+ +N
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKREAN 232
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 32.3 bits (74), Expect = 1.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
E+ KKKKKKK KKKK KK I+
Sbjct: 179 EEEKKKKKKKSAKKKKLKKVAAVGMKAIS 207
Score = 30.4 bits (69), Expect = 3.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ + ++KKKKKKK KKKK KK +
Sbjct: 168 AARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGM 203
Score = 29.6 bits (67), Expect = 7.3
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ +KKKKKKK KKKK KK K
Sbjct: 178 AEEEKKKKKKKSAKKKKLKKVAAVGMK 204
Score = 29.6 bits (67), Expect = 7.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSS 188
EK KKKKK KKKK KK +
Sbjct: 179 EEEKKKKKKKSAKKKKLKKVAAVGMKA 205
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 32.4 bits (74), Expect = 1.2
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKK 186
A +K K K KK KK
Sbjct: 190 TASSGDEKSPKSKAAPKKAGKK 211
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 31.1 bits (71), Expect = 1.2
Identities = 10/23 (43%), Positives = 20/23 (86%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKK 185
E+ K++KKK+ K+KK+++K++K
Sbjct: 95 HERNKQEKKKRSKEKKEEEKERK 117
Score = 29.5 bits (67), Expect = 3.9
Identities = 9/22 (40%), Positives = 19/22 (86%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKK 186
+ K++KKK+ K+KK+++K++K
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERK 117
Score = 28.8 bits (65), Expect = 9.0
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
LE + K++KKK+ K+KK+++K++
Sbjct: 93 LEHERNKQEKKKRSKEKKEEEKER 116
>gnl|CDD|220841 pfam10670, DUF4198, Domain of unknown function (DUF4198). This
family was previously missannotated in Pfam as NikM.
Length = 219
Score = 32.0 bits (73), Expect = 1.3
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
Query: 800 LIPITHPEALIFAGKEMEIQFRM-SKPLTD------FMSTLHKNGADEKKLNKCVTHRIL 852
++P+THP L AG+ Q KP + T +++ AD +++ T
Sbjct: 142 IVPLTHPYDL-VAGEPFTFQVLYDGKPAAGAEVEVEYGGTDYRDEADTQEV---KT---- 193
Query: 853 DQD-IVSFIINFPEEGQYGFDV 873
D D + +F P+ G Y
Sbjct: 194 DADGVFTFTP--PKAGWYLLAA 213
>gnl|CDD|220730 pfam10395, Utp8, Utp8 family. Utp8 is an essential component of
the nuclear tRNA export machinery in Saccharomyces
cerevisiae. It is a tRNA binding protein that acts at a
step between tRNA maturation /aminoacylation, and
translocation of the tRNA across the nuclear pore
complex.
Length = 669
Score = 32.7 bits (75), Expect = 1.3
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
+E LT+N+ + TL KK K +KS++ ++
Sbjct: 615 VEVLTRNSYLL-TLVDQVLLSNSPSSKKALSSKSIEKSASPLS 656
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 32.8 bits (75), Expect = 1.4
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
K+AE + +K KKKKKK+KKK+++ K++ +I
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 31.6 bits (72), Expect = 1.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKK 186
TL +AK K KK+KKK+ K+KK
Sbjct: 187 TLRQAKLNAKFVGKKEKKKQAKEKK 211
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 30.7 bits (70), Expect = 1.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
+ K K K +KK+++KK + +K K
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAK 40
Score = 29.5 bits (67), Expect = 3.4
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
++KA K+K K +KK+++KK + + K++ +
Sbjct: 13 VDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAE 44
>gnl|CDD|227502 COG5175, MOT2, Transcriptional repressor [Transcription].
Length = 480
Score = 32.3 bits (73), Expect = 1.6
Identities = 20/87 (22%), Positives = 38/87 (43%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSVVGNIVSFR 214
NA + +L +K+ K ++ KK KKS N +A +LV + I ++V F
Sbjct: 373 GNAARLHSLSNYQKRPISIKSDEETYKKWDKKSDNTLANKLVEILAIKPIDYTASVVQFL 432
Query: 215 VHAPAAAEFLLDVFANSVTPREYLTGE 241
+ + N+ TP + ++ +
Sbjct: 433 QSVNVGVNDNITITDNTKTPTQPISQQ 459
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 32.5 bits (74), Expect = 1.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSS 188
++ T KA K KKK K K KK KK+
Sbjct: 752 KAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGP 786
Score = 32.5 bits (74), Expect = 1.7
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
K + AK KKK K K KK KK+ +P L
Sbjct: 753 AKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPLYTPSPAL 794
Score = 31.3 bits (71), Expect = 3.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 143 LGNTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
+GN++ + TK A T T + K K KKK K K K K +K
Sbjct: 728 IGNSIDAVI--TKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAK 775
Score = 31.3 bits (71), Expect = 4.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
KAKKK K K K KKK K+ +K
Sbjct: 752 KAKKKSASTKGKAAKTVKKKSKAKSKKT 779
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the parasitophorous
vacuole membrane. Members have an initial hydrophobic,
Phe/Tyr-rich, stretch long enough to span the membrane,
a highly charged region rich in Lys, a second putative
transmembrane region and a second highly charged, low
complexity sequence region. Some members have up to 100
residues of additional C-terminal sequence. These genes
have been shown to be found in the sub-telomeric regions
of both Plasmodium falciparum and P. yoelii chromosomes.
Length = 82
Score = 29.5 bits (67), Expect = 1.6
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 149 LIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
L GL N KKKK KK KK +KKK + K
Sbjct: 19 LAPGLNNNVV--------AKKKKLKKLKKIDDDLEKKKKNKKKI 54
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an exchange
factor for Cdc42 and an effector of Ras1, the homolog of
the human H-Ras. Scd2/Bem1 mediates Cdc42 activation by
binding to Scd1/Cdc24 and to Cdc42. Ras1 regulates
Scd1/Cdc24/Ral1, which is a putative guanine nucleotide
exchange factor for Cdc42, a member of the Rho family of
Ras-like proteins. Cdc42 then activates the Shk1/Orb2
protein kinase. Scd1 interacts with Klp5 and Klp6
kinesins to mediate cytokinesis. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 31.1 bits (71), Expect = 1.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 160 VCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMN 200
+C E KKKKK K K KKKK + + IF++
Sbjct: 58 LCCKEVKKKKKKSSLKSKSSSSSKKKKKKGPLQLKGRIFIS 98
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 30.3 bits (69), Expect = 1.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 164 EKAKKKKKKKKKKKKKKKKKK 184
E + K K+K+KKKKKKK+ +
Sbjct: 69 EAVEAKAKEKEKKKKKKKELE 89
Score = 29.5 bits (67), Expect = 3.5
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKK 185
E+A + K K+K+KKKKKKK+ +
Sbjct: 68 EEAVEAKAKEKEKKKKKKKELE 89
Score = 29.5 bits (67), Expect = 3.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKK 186
T + + K K+K+KKKKKKK+ +
Sbjct: 65 TAREEAVEAKAKEKEKKKKKKKELE 89
Score = 29.5 bits (67), Expect = 3.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKK-------KKKKKK 186
K A KAK+K+KKKKKKK+ + ++KKK+
Sbjct: 63 GKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKE 102
Score = 28.4 bits (64), Expect = 9.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 152 GLTKNAETVCTLEKAKKKKKKKKKKKK-------KKKKKKK 185
G T E V K K+KKKKKKK+ + ++KKK++
Sbjct: 63 GKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEE 103
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 32.2 bits (74), Expect = 1.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSS 188
+K +K +KK +K++ +K KKK+
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 31.8 bits (73), Expect = 2.6
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+K +KK++K +KK +K++ +K + K
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAA 442
Score = 30.3 bits (69), Expect = 6.7
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
E+ K +KK++K +KK +K++ +K
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEK 432
Score = 30.3 bits (69), Expect = 6.9
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
++KK +KK++K +KK +K+ + K A +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAK 436
Score = 29.9 bits (68), Expect = 8.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKK 184
L A++KK +KK++K +KK +K
Sbjct: 406 LSPAERKKLRKKQRKAEKKAEK 427
Score = 29.9 bits (68), Expect = 9.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
KA+KK +K++ +K KKK + ++ K
Sbjct: 420 KAEKKAEKEEAEKAAAKKKAEAAAKK 445
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 29.1 bits (66), Expect = 1.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKK 185
EK +K+K+KK +K+++KK
Sbjct: 39 EKPSEKRKRKKAAARKRRRKKL 60
Score = 28.3 bits (64), Expect = 3.3
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 168 KKKKKKKKKKKKKKKKKKKSS 188
K+K+KK +K+++KK +
Sbjct: 44 KRKRKKAAARKRRRKKLAREE 64
Score = 28.3 bits (64), Expect = 3.9
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 167 KKKKKKKKKKKKKKKKKKK 185
K+K+KK +K+++KK +
Sbjct: 44 KRKRKKAAARKRRRKKLAR 62
Score = 27.9 bits (63), Expect = 4.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 167 KKKKKKKKKKKKKKKKKKKK 186
K +K+K+KK +K+++KK
Sbjct: 40 KPSEKRKRKKAAARKRRRKK 59
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 32.0 bits (73), Expect = 1.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Query: 1063 IFPYFRYEYDDHYF-LTDP-------REFIYEFF 1088
IF Y R E ++HYF LT+P RE+ E
Sbjct: 92 IFKYLRCEPEEHYFILTEPPMNPPENREYTAEIM 125
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 31.7 bits (73), Expect = 1.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 159 TVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMN 200
V E+ KK +K +K KKKKK++K + + I +N
Sbjct: 183 NVKQTEELIKKLLEKPEKPKKKKKRRK----GFSKDVRIAVN 220
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 31.8 bits (72), Expect = 2.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
A K KK KK KK KK K+ K A
Sbjct: 244 TAAKAAKKAKKTAKKALKKAAKAVKKAA 271
Score = 31.0 bits (70), Expect = 3.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
AKK KK KK KK K KK++ K A
Sbjct: 248 AAKKAKKTAKKALKKAAKAVKKAAKKAA 275
Score = 31.0 bits (70), Expect = 3.5
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
K +KA K K KK KKK K S K A
Sbjct: 204 KTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKA 241
Score = 31.0 bits (70), Expect = 3.6
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
KAK KK KKK K K + K A
Sbjct: 218 KAKSAAKKVSKKKAAKTAVSAKKAAKTA 245
Score = 31.0 bits (70), Expect = 4.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
AKK KK K KK KK K++ K A
Sbjct: 255 TAKKALKKAAKAVKKAAKKAAKAAAKAA 282
Score = 30.2 bits (68), Expect = 6.0
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
KAKK KK KK K KK K + K A
Sbjct: 251 KAKKTAKKALKKAAKAVKKAAKKAAKAA 278
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 31.3 bits (71), Expect = 2.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K KKKK +KKK KK KKK K
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEK 74
Score = 30.5 bits (69), Expect = 3.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMN 200
+KKKK +KKK KK KKKK + P+L
Sbjct: 51 SKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEEL 85
Score = 29.8 bits (67), Expect = 6.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+E KK KKKK +KKK KK+ K
Sbjct: 43 VEIPSKKTSKKKKTTPRKKKTTKKTKKK 70
Score = 29.4 bits (66), Expect = 8.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K KKKK +KKK KK K K +
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEE 76
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 31.5 bits (72), Expect = 2.1
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 150 IEGLTKNAETVCTL------EKAKKKKKKKKKKKKKKKKKKKK 186
+E K AE + EKAK+ KK KK KKKKKK+KK
Sbjct: 128 LEKAKKKAEAIAEDEDISEREKAKQIKKLYKKAKKKKKKRKKT 170
Score = 29.2 bits (66), Expect = 8.9
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 165 KAKKKKKKKKK-----KKKKKKKKKKKSSNK 190
KAKKKKKK+KK KK K K + K
Sbjct: 159 KAKKKKKKRKKTYVVAKKGNKGKAGRPKGVK 189
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 29.5 bits (67), Expect = 2.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSS 188
+K +++K KKK KK + ++ KK
Sbjct: 67 RDKEERRKDKKKYGKKARLREWKKKV 92
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 29.3 bits (66), Expect = 2.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E+ KK+KKK K + KK +K+ K K
Sbjct: 26 EELKKQKKKNKLRFLKKLEKRPKDVKK 52
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 31.7 bits (72), Expect = 2.3
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 149 LIEGLTKNAETVCTLEKAKKKKKKK-------KKKKKKKKKKKKKSSNK 190
++E L + EK KKK K K++K++K+KK K +
Sbjct: 112 ILELLALELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDL 160
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 31.6 bits (72), Expect = 2.3
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 124 IGLYP---GPSTYNDGKYGHFA-LGNT-LGLIEGLTKNAETVCTLEKA--------KKKK 170
+G +P P T DG++G + G T L +G K+ ++ TLE+A K
Sbjct: 204 LGTHPEGGKPITVKDGRFGPYVKDGKTNATLPKG--KDPASI-TLEEALELLAERRAKGG 260
Query: 171 KKKKKKKKKKKKKKKKSSNKIA 192
KK KK K KK++ K A
Sbjct: 261 PGKKPAKKATAAKAKKTTAKKA 282
Score = 30.1 bits (68), Expect = 7.1
Identities = 13/41 (31%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 157 AETVCTLEKAKKKKKKKKKKKKKK---KKKKKKSSNKIAPQ 194
AE KK KK K KK KK K + K
Sbjct: 253 AERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKA 293
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 30.6 bits (70), Expect = 2.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+K KKKKKK+ + ++KKKK S + Q
Sbjct: 84 KKKKKKKKKEGEFFEEKKKKYVVSEERKEDQ 114
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 32.1 bits (73), Expect = 2.4
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSV-VGNIVSFRVHAPAAAE 222
++ KKK KKK+ KK +K A + I ++ + VG IV H A +
Sbjct: 605 KQLKKKALSDGGKKKQGKKAGGGGKSKAAAEREI--DVSRLDIRVGLIVKAEKHPDADSL 662
Query: 223 FLLDVFANSVTPREYLTG-------EPMKFKSVC 249
++ ++ PR ++G E M+ + VC
Sbjct: 663 YVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVC 696
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 31.2 bits (71), Expect = 2.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 155 KNAETVCTLEKAKKKK-----KKKKKKKKKKKKKKKKSSNKIAP 193
K A+ V LE+ +K++ KKK K +K K+ +KK+ K+
Sbjct: 147 KYADVVAKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPK 190
>gnl|CDD|202819 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, N-terminal
domain. The N-terminal domain appears to be specific to
the eukaryotic ribosomal proteins L25, L23, and L23a.
Length = 52
Score = 28.4 bits (64), Expect = 2.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSS 188
KA K KK K KKK+K ++S
Sbjct: 4 KALKAKKAVLKGVHGKKKRKIRTS 27
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 31.8 bits (72), Expect = 2.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSN 189
A KK ++ KK KK KK+S
Sbjct: 1192 GAAKKVSRQAPKKPAPKKTTKKASE 1216
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 30.4 bits (69), Expect = 2.8
Identities = 8/26 (30%), Positives = 22/26 (84%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ K+++K+++K++K++K++K+K K
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGK 40
Score = 29.6 bits (67), Expect = 5.3
Identities = 7/27 (25%), Positives = 23/27 (85%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSS 188
+E+ +++K+++K++K++K++K+K+
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWG 39
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 31.8 bits (73), Expect = 2.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
KA+ KK ++ +KKK K+A
Sbjct: 344 AKARAAAKKARELTRKKKLSSISLPGKLAD 373
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 30.0 bits (68), Expect = 2.9
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
++A K ++++ +K +K+ KK K + + QL +F
Sbjct: 100 KEALKAYQQEELRKIQKRSKKSKKAEPVQGQLSLF 134
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 30.1 bits (68), Expect = 3.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNKI 191
AKK KKK KK K KK K K+
Sbjct: 4 AKKAKKKAKKAAKAAKKGVKVKKRKV 29
Score = 29.7 bits (67), Expect = 4.0
Identities = 11/26 (42%), Positives = 11/26 (42%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIA 192
K KK KKK KK K KK
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKK 26
Score = 29.7 bits (67), Expect = 4.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+K KK K KK K KK+K ++S +
Sbjct: 8 KKKAKKAAKAAKKGVKVKKRKVRTSVR 34
Score = 29.7 bits (67), Expect = 5.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ KK KKK KK K KK K +
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKR 27
Score = 29.7 bits (67), Expect = 5.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKS 187
KK KK K KK K KK+K
Sbjct: 7 AKKKAKKAAKAAKKGVKVKKRKV 29
Score = 29.3 bits (66), Expect = 5.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKK 186
K KKK KK K KK K KK
Sbjct: 2 APAKKAKKKAKKAAKAAKKGVKVKK 26
Score = 28.9 bits (65), Expect = 7.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSN 189
K K KK K KK K KK+K ++
Sbjct: 7 AKKKAKKAAKAAKKGVKVKKRKVRTS 32
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 29.9 bits (68), Expect = 3.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKK 185
+ + + KA ++++K K+KKKKKKK+ +
Sbjct: 60 RKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
Score = 29.5 bits (67), Expect = 4.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKK 182
K + + ++K K+KKKKKKK+ +
Sbjct: 62 RKAGASRNKAAEERRKLKEKKKKKKKELE 90
Score = 29.1 bits (66), Expect = 5.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
+ K ++++K K+KKKKKKK+
Sbjct: 66 ASRNKAAEERRKLKEKKKKKKKEL 89
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 29.3 bits (66), Expect = 3.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 165 KAKKKKKKKKKKKKK--KKKKKKKSSNKIAPQL---VIF 198
K ++KK K K KKKK S K+ +L V+F
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDKLNNAVLF 42
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 31.2 bits (71), Expect = 3.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSN 189
K+K++ KK+KKKK KK K + N
Sbjct: 356 KRKREGDKKQKKKKSKKLKLTFN 378
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 31.1 bits (71), Expect = 3.4
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 155 KNAETVCTLE---KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K +T L+ A KK KK K K KKKKKK+ P+
Sbjct: 334 KTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPK 376
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 31.2 bits (71), Expect = 3.6
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKKKK------KKKKKKKKSSNKIAPQ 194
E ++ +K KKK+KK+ K + K KK KK+ K
Sbjct: 60 EDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKP 109
Score = 30.8 bits (70), Expect = 3.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
E K K +KKKKKKK+KK+ K + ++
Sbjct: 56 KDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFK 94
Score = 30.8 bits (70), Expect = 4.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKK--KKKKKKKKKKSSNK 190
E K A T +K + K + KKK KKKKKKK+KK
Sbjct: 43 SEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKS 85
Score = 30.5 bits (69), Expect = 5.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
+ KN E+ EK KKKKK+KK+ K + + K + K +
Sbjct: 57 DKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK 100
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 30.5 bits (69), Expect = 3.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 158 ETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
E + EK +KKK K+ K+++K++K+ A
Sbjct: 182 EMLQQKEKEEKKKVKEAKRREKEEKRMAALVAAAAQ 217
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 31.0 bits (70), Expect = 3.8
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKK--------KKKKKKKKKKSSNKIAP 193
+ T T KA K+ KK KKK K+KK+K +
Sbjct: 189 KETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASEST 239
>gnl|CDD|119353 cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme
(CFLE) is a peptidoglycan hydrolase involved in
bacterial endospore germination. CFLE is expressed as
an inactive preprotein (called SleB) in the forespore
compartment of sporulating cells. SleB translocates
across the forespore inner membrane and is deposited as
a mature enzyme in the cortex layer of the spore. As
part of a sensory mechanism capable of initiating
germination, CFLE degrades a spore-specific
peptidoglycan constituent called muramic-acid
delta-lactam that comprises the outer cortex. CFLE has
a C-terminal glycosyl hydrolase family 18 (GH18)
catalytic domain as well as two N-terminal LysM
peptidoglycan-binding domains. In addition to SleB,
this family includes YaaH, YdhD, and YvbX from Bacillus
subtilis.
Length = 313
Score = 30.7 bits (70), Expect = 4.0
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 19/77 (24%)
Query: 343 TPMGLLRGIKHGTESY---HVLFKR----------LCSLVRYYG--GCSIDIEKPAIYVA 387
P+ ++ + +G H + + +L + YG G +ID E V
Sbjct: 60 KPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFE----NVP 115
Query: 388 QEDQHTFTDLVRQLAGR 404
ED+ +T +R+L+ R
Sbjct: 116 PEDREAYTQFLRELSDR 132
>gnl|CDD|217754 pfam03836, RasGAP_C, RasGAP C-terminus.
Length = 139
Score = 29.5 bits (67), Expect = 4.1
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 162 TLEKAKKKKKKK---KKKKKKKKKKKKKSSNKI-APQL 195
TL+K KK K+K KK +KK KK K S K A QL
Sbjct: 87 TLQKKKKFSKQKFSVKKLQKKHGKKPKFGSYKYSAKQL 124
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 31.2 bits (71), Expect = 4.1
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
L++ K+ +K KK+++KKKK+ +K KI P
Sbjct: 563 LKEQKRLRKLKKQEEKKKKELEKLEKAKIPPA 594
Score = 30.8 bits (70), Expect = 5.1
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
EK +K+ K++K+ +K KK+++K
Sbjct: 555 REKEEKEALKEQKRLRKLKKQEEK 578
>gnl|CDD|129171 TIGR00061, L21, ribosomal protein L21. Eubacterial and chloroplast
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 101
Score = 28.9 bits (65), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 156 NAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
A+ V +EK + KK K K +++K +KK
Sbjct: 55 GAKVVAEVEKHGRGKKVKVYKYRRRKHSRKK 85
>gnl|CDD|222466 pfam13945, NST1, Splicing factor, salt tolerance regulator. NST1
is a family of proteins that seem to be involved,
directly or indirectly, in the salt sensitivity of some
cellular functions in yeast. These proteins also
interact with the splicing factor Msl1p.
Length = 189
Score = 30.3 bits (68), Expect = 4.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 172 KKKKKKKKKKKKKKKSSN 189
K KKKKKK+ K S N
Sbjct: 32 KSKKKKKKRSKATSPSHN 49
>gnl|CDD|130665 TIGR01604, PYST-C2, Plasmodium yoelii subtelomeric domain PYST-C2.
This model represents a domain of a paralogous family of
Plasmodium yoelii genes preferentially located in the
subtelomeric regions of the chromosomes. There are no
obvious homologs to these genes in any other organism.
The genes found by this model often are associated with
an N-terminal domain yoelii-specific domain such as
PYST-C1 (TIGR01601).
Length = 150
Score = 29.9 bits (67), Expect = 4.4
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 134 NDGKYGHFALGNTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
+ K+ H + L T ++T+ L KK + KK+KK+KK S+N +P
Sbjct: 48 LNEKFEHRSSNEN-SLEPDYTLGSDTIKELSNNKKSECLNCFIFKKEKKEKKSSNNNGSP 106
Query: 194 QLVIFMNIGTTSVVGNIV-SFRVHAPAAAEFLLD 226
V +VGN+ S V +P +FLL+
Sbjct: 107 SKVTL-------LVGNVPHSIPVQSPEHYQFLLN 133
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel repeat
in Pneumocystis carinii Major surface glycoprotein (MSG)
some members of the alignment have up to nine repeats of
this family, the repeats containing several conserved
cysteines. The MSG of P. carinii is an important protein
in host-pathogen interactions. Surface glycoprotein A
from Pneumocystis carinii is a main target for the host
immune system, this protein is implicated in the
attachment of Pneumocystis carinii to the host alveolar
epithelial cells, alveolar macrophages, host surfactant
and possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 28.6 bits (64), Expect = 4.4
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 152 GLTKNAETVCTLE---KAKKKKKKKKKKKKKKKKKKKKSSN 189
E + E + KKKKK KK K+K K KK+S+
Sbjct: 41 KKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 28.9 bits (65), Expect = 4.5
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKK 184
KN V + +K K KK KK KK
Sbjct: 35 KKNGAPVTQTAGTETTTEKCKGKKDKKDCKK 65
>gnl|CDD|216735 pfam01841, Transglut_core, Transglutaminase-like superfamily. This
family includes animal transglutaminases and other
bacterial proteins of unknown function. Sequence
conservation in this superfamily primarily involves
three motifs that centre around conserved cysteine,
histidine, and aspartate residues that form the
catalytic triad in the structurally characterized
transglutaminase, the human blood clotting factor
XIIIa'. On the basis of the experimentally demonstrated
activity of the Methanobacterium phage pseudomurein
endoisopeptidase, it is proposed that many, if not all,
microbial homologues of the transglutaminases are
proteases and that the eukaryotic transglutaminases have
evolved from an ancestral protease.
Length = 108
Score = 28.9 bits (65), Expect = 4.6
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 19/94 (20%)
Query: 399 RQLAGRH---ATSDIEKARTLFRWITVKNLNTMSFDDNMA---GDTPMGLLRGIKHGT-E 451
R LA R AT EKA+ ++ ++ +++D D +L G
Sbjct: 1 RALADRITGGATDPYEKAKAIYDYVR----KNITYDAPGRSPGDDDAEEVLFT-GKGVCG 55
Query: 452 SYHVLFKRLCR--GI----IAGFYP-LFTVKNLN 478
+ LF L R GI + G+ TV+N +
Sbjct: 56 DFASLFVALLRALGIPARYVTGYLRGPDTVRNGD 89
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 30.7 bits (70), Expect = 4.8
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
+ T KA K KKK K + KK+ K A
Sbjct: 74 IPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
Score = 30.3 bits (69), Expect = 6.0
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
++ E+ +K K K K KKK K + +
Sbjct: 63 VKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKA 106
Score = 30.3 bits (69), Expect = 6.4
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
AKKK K + KK +KK +
Sbjct: 90 APAKKKLKDELDSSKKAEKKNALDKDDDL 118
Score = 30.0 bits (68), Expect = 8.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
KA KKK K + KK +KK + +K +
Sbjct: 89 KAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 30.7 bits (70), Expect = 4.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKK 183
E + K AE E +KK++KKK++++ K K
Sbjct: 269 EEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
>gnl|CDD|201461 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein.
Length = 96
Score = 28.6 bits (65), Expect = 4.9
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
+ A+ + + + KK K K++K +KK
Sbjct: 55 EGAKVKAEVLEHGRGKKVIVFKYKRRKNYRKK 86
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 30.5 bits (69), Expect = 5.0
Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 154 TKNAETVC-TLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
TK E++ L +K+K+ K++++KK+ +++KK ++AP
Sbjct: 268 TKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAP 308
>gnl|CDD|240709 cd12263, RRM_ABT1_like, RNA recognition motif found in activator of
basal transcription 1 (ABT1) and similar proteins. This
subfamily corresponds to the RRM of novel nuclear
proteins termed ABT1 and its homologous counterpart,
pre-rRNA-processing protein ESF2 (eighteen S factor 2),
from yeast. ABT1 associates with the TATA-binding
protein (TBP) and enhances basal transcription activity
of class II promoters. Meanwhile, ABT1 could be a
transcription cofactor that can bind to DNA in a
sequence-independent manner. The yeast ABT1 homolog,
ESF2, is a component of 90S preribosomes and 5'
ETS-based RNPs. It is previously identified as a
putative partner of the TATA-element binding protein.
However, it is primarily localized to the nucleolus and
physically associates with pre-rRNA processing factors.
ESF2 may play a role in ribosome biogenesis. It is
required for normal pre-rRNA processing, as well as for
SSU processome assembly and function. Both ABT1 and ESF2
contain an RNA recognition motif (RRM), also termed RBD
(RNA binding domain) or RNP (ribonucleoprotein domain).
.
Length = 98
Score = 28.7 bits (65), Expect = 5.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 164 EKAKKKKKKKKKKKKKKKK--------KKKKSSNKIAPQL 195
E K+K++KKK KKKK + KK + ++A L
Sbjct: 35 EDPAKRKRRKKKGGNKKKKFTEGWVEFEDKKVAKRVAESL 74
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 30.9 bits (70), Expect = 5.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
E+ +K++KKKK KK K+ + + NK P
Sbjct: 63 EEEEKEEKKKKTKKVKETTTEWELLNKTKP 92
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 29.6 bits (67), Expect = 5.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKK 186
L+K+K+ K +KK+KK K+KK
Sbjct: 144 ELKKSKQLDKALEKKRKKNAGKEKK 168
>gnl|CDD|172713 PRK14225, PRK14225, camphor resistance protein CrcB; Provisional.
Length = 137
Score = 29.2 bits (65), Expect = 5.5
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 687 VNMQSSLIFHYNLKLYDGDGDMLDGVSLKRFVMQSVVGNIVSFRVHAPAAAEFLLDVFAN 746
VN+ S I + L +G L + ++FVM + G + +F + + FLL + N
Sbjct: 49 VNIVGSFIIMFFATLTGPEGRWLVSPAWRQFVMGGLCGGLTTFS--SMSLDTFLLVLHGN 106
Query: 747 SVTPREYLTG 756
+ YL G
Sbjct: 107 AAFALAYLCG 116
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 30.9 bits (70), Expect = 5.5
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 280 RLFGLIPITHPVAQEDQHTFTDLVRQLAGRHATSDIEKARTLFRWITVKNLNTMSFDD 337
R F LIP HP D+ V+ L A DIE A R + S DD
Sbjct: 709 RFFTLIPSIHPHIIRDEDDLKSKVKML---EALQDIEIAS---RLVGFDVDEDDSLDD 760
>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated.
Length = 143
Score = 29.2 bits (66), Expect = 5.7
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 170 KKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSVVGNIVSFRV 215
KK KKK +K NK +++ + G +SFR
Sbjct: 3 FLLKKMYNKKKNRKSNIKENKWEERVIQIKRVSKVVKGGKKLSFRA 48
>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal
structure and biogenesis].
Length = 125
Score = 29.1 bits (66), Expect = 5.9
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMN-------IGTTSVVGNIVSFRVHA 217
K K +++++ K+ + +KK +S + P+LV+ + I G + S +
Sbjct: 4 KVKFRRRRRGKRAYRIRKKLLGTSGR--PRLVVRRSNRHIYAQIIDDVKGGTLASASTLS 61
Query: 218 PAAAEFLLDVFANSVTPREYLTGE 241
++ + T YL G+
Sbjct: 62 KELRKYGKKGGGGN-TEAAYLVGK 84
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 28.7 bits (65), Expect = 6.0
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 167 KKKKKKKKKKKKK-----KKKKKKKSSNKIAPQ 194
K++KKKKKKK + KK+KK+ S + A Q
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQ 70
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 28.6 bits (64), Expect = 6.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
K +KKKKK+ K + K KK
Sbjct: 22 KKRKKKKKRTAKTARPKATKKGQKKDKK 49
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 30.2 bits (68), Expect = 6.4
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
I A+ V +K + K K K KK KKK S+ +
Sbjct: 137 ISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMP 181
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 29.5 bits (67), Expect = 6.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 168 KKKKKKKKKKKKKKKKKKKSSNKIAP 193
KKKK K+ K K KKK+ ++
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDA 26
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 30.2 bits (69), Expect = 6.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 150 IEGLTKNAETVCTLEKAKK--KKKKKKKKKKKKKKKKKKSSNKIAPQL 195
+E L + + + +K+KKK+KKK KKKK K KI L
Sbjct: 378 VEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVL 425
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 29.8 bits (67), Expect = 6.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSS 188
+ ++ K+KKKKK KKKK KS
Sbjct: 84 SPNQENKQKKKKKDKKKKSPKSL 106
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 30.6 bits (69), Expect = 7.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 152 GLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
AE E+ ++KKKK++K K+K+ KK K++ K A
Sbjct: 3 RTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEA 43
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 30.3 bits (69), Expect = 7.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 11 QTRLEMKHRQEEDDLYRIFARQREEEDNRIKQEFRHR 47
+ RL+ + +EE + R+ +Q E+E+ + + R
Sbjct: 247 EERLQEERAEEEAERERMLEKQAEDEELEQENAEKRR 283
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 30.4 bits (69), Expect = 7.1
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 155 KNAETVCTLEKAKKKK-----KKKKKKKKKKKKKKKKSSNKIAP 193
+ AE +E+ +++ K KKKK+KKK+ +K ++
Sbjct: 404 EKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFRWFVSS 447
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 29.8 bits (67), Expect = 7.1
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSS 188
K K KK KK KKKKKKK S
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
Score = 29.4 bits (66), Expect = 9.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
K K KK KK KKKKKKK+
Sbjct: 195 YKGDKSSAKKDKKSKKKKKKKRS 217
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 30.4 bits (69), Expect = 7.5
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVI 197
K K K +K K KKK+KKKKK S++K V+
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVV 1195
Score = 30.4 bits (69), Expect = 8.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 174 KKKKKKKKKKKKKSSNKIAPQLVIFMN 200
+K KKKKKK K+ N+I L +F+N
Sbjct: 320 EKAKKKKKKGKEIKPNQIKNHLWVFVN 346
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 29.7 bits (67), Expect = 8.0
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKS 187
K KKKKKKKKK KK K KK +
Sbjct: 253 SKVKKKKKKKKKVVHKKYKTKKLT 276
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 28.9 bits (65), Expect = 8.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
KAK+K ++ K K KK++ +K+K +
Sbjct: 67 KAKEKLRRDKLKAKKEEAEKEKEKEE 92
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 30.0 bits (68), Expect = 8.1
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
EK + K+KKK+KKK++KKKK+
Sbjct: 322 EKLDAEVKEKKKEKKKEEKKKKQ 344
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched DNA
substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch junction
and thus generating ligatable nicked products from
5'-flap or replication fork substrates.
Length = 627
Score = 29.9 bits (67), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 161 CTLEKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+ ++ KKKK KK K +K+ K+K K +
Sbjct: 66 VSGKRVPKKKKIKKPKLRKRTKRKNKKIKSL 96
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 29.9 bits (67), Expect = 8.3
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKK--KKKKKKKKKKSSNKIAPQLV 196
T + ET T + AK K KK K KK K K ++ K+ +
Sbjct: 24 TTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFE 68
Score = 29.5 bits (66), Expect = 9.9
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
TK T E+ K KK K+ K KK +
Sbjct: 4 TKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTS 40
>gnl|CDD|216581 pfam01577, Peptidase_S30, Potyvirus P1 protease. The potyviridae
family positive stand RNA viruses with genome encoding a
polyprotein. members include zucchini yellow mosaic
virus, and turnip mosaic viruses which cause
considerable losses of crops worldwide. This family
consists of a C terminus region from various plant
potyvirus P1 proteins (found at the N terminus of the
polyprotein). The C terminus of P1 is a serine-type
protease responsible for autocatalytic cleavage between
P1 and the helper component protease pfam00851. The
entire P1 protein may be involved in virus-host
interactions.
Length = 245
Score = 29.6 bits (67), Expect = 8.6
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 158 ETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSVVGNIVS 212
+ V E + K+ KK KKKKKK ++ ++ + V I
Sbjct: 72 DKVSKTESVSFRTPYYKRTTKKMKKKKKKKKVVMSDKINYLIR-----QVLKIAK 121
>gnl|CDD|188327 TIGR03464, HpnC, squalene synthase HpnC. This family of genes are
members of a superfamily (pfam00494) of phytoene and
squalene synthases which catalyze the head-t0-head
condensation of polyisoprene pyrophosphates. The genes
of this family are often found in the same genetic locus
with squalene-hopene cyclase genes, and are never
associated with genes for the metabolism of phytoene. In
the organisms Zymomonas mobilis and Bradyrhizobium
japonicum these genes have been characterized as
squalene synthases (farnesyl-pyrophosphate ligases).
Often, these genes appear in tandem with the HpnD gene
which appears to have resulted from an ancient gene
duplication event. Presumably these proteins form a
heteromeric complex, but this has not yet been
experimentally demonstrated.
Length = 266
Score = 29.6 bits (67), Expect = 8.8
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 375 CSIDIEKPAIYVAQEDQHTFTDLVRQLAGRHATSD--------IEKARTLF 417
+D+ K +Y+ ++D F LA AT + + R L
Sbjct: 156 VGVDLRKGRVYLPRDDLARFGVSEEDLAAGRATPAVRALMAFEVSRTRALL 206
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 28.4 bits (64), Expect = 8.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 164 EKAKKKKKKKKKKKKKKKKKK 184
E K +K+KKKKKKK+ K
Sbjct: 68 ESVAAKAAEKEKKKKKKKELK 88
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 29.9 bits (67), Expect = 8.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSS 188
KK KK KK K KK K S
Sbjct: 333 GLSKKGKKLKKLKGKKNGLDKDDS 356
>gnl|CDD|223028 PHA03263, PHA03263, Capsid triplex subunit 1; Provisional.
Length = 332
Score = 29.6 bits (67), Expect = 9.1
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 280 RLFGLIP-ITHPVAQEDQHTFTDLVRQLAGRHATSDIEKARTLFR 323
L L+P TH ++ + F VR L ++ +S ++FR
Sbjct: 15 DLLRLLPPPTHKLSLTRGNKFARGVRDLVSKYVSSIGG-PESMFR 58
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 29.7 bits (67), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E+ KK++ + ++KKK+KK K +
Sbjct: 367 ERDKKERPGRYRRKKKEKKAKSERRGL 393
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 59,036,113
Number of extensions: 5915077
Number of successful extensions: 14703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12601
Number of HSP's successfully gapped: 513
Length of query: 1140
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 1033
Effective length of database: 6,191,724
Effective search space: 6396050892
Effective search space used: 6396050892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.5 bits)