RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2861
(1140 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 8e-08
Identities = 100/721 (13%), Positives = 193/721 (26%), Gaps = 238/721 (33%)
Query: 41 KQEFRHRGIIGGFHPLFTVKNLNTMSFDDNITGDTPMGLLR--------GIKHGTESYHV 92
+ +++++ I+ F F V N FD D P +L K
Sbjct: 13 EHQYQYKDILSVFEDAF-VDN-----FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 93 LFKRLCRQFFEIVETQPSLLENSIGTSY-YMYIGL---YPGPS------------TYNDG 136
LF L + E+V+ +E + +Y ++ + PS YND
Sbjct: 67 LFWTLLSKQEEMVQ---KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 137 ----KYG------HFALGNTLG--------LIEGLTKNAETVCTLEKAKKKKKKKKKKKK 178
KY + L L LI+G+ + +T L+ K + K K
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 179 ---KKKKKKKKSSNKIAPQLVIFMNIGT--TSVVGNIVSFRVHAPAAAEFLLDVFANSVT 233
K + + I TS + + ++ + L + +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 234 PREYLTGEPMKFKSVCK-FKIVCTELYTVMVPLPDCASGEWGPTKATRLFGLIPI----- 287
L ++ F + C L T TR +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLT------------------TRFKQVTDFLSAAT 285
Query: 288 -THPVAQEDQHTFTDLVRQLAGRHATSDIEKARTLFRWITVKNLNTMSFDD---NMAGDT 343
TH T T ++ ++L K L+ D +
Sbjct: 286 TTHISLDHHSMTLTP--------------DEVKSLLL----KYLD-CRPQDLPREVLTTN 326
Query: 344 PMGL------LRGIKHGTESY-HVLFKRLCSLVRYYGGCSIDIEKPAIYVAQEDQHTFTD 396
P L +R +++ HV +L +++ S+++ +PA E + F
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE----SSLNVLEPA-----EYRKMFDR 377
Query: 397 LVRQLAGRHATSDIEKARTLFR---WITVKNLNTMSFDDNMAGDTPMGLLRGIKHGTESY 453
L +F I L ++ M ++
Sbjct: 378 LS-----------------VFPPSAHIPTILL--SLIWFDVIKSDVMVVV---------- 408
Query: 454 HVLFKRLCRGIIAGFYPLFTVKNLNTMSFDNMTGDTPMGLPRGIKHGTESYH-VLFKLLC 512
+L + +L + + K T S + +L
Sbjct: 409 ----NKLHK------------YSL---------------VEKQPKESTISIPSIYLELKV 437
Query: 513 S---YAGLHCVVIKGYSKSAGYQP---GVKFEDNRFRNSWNAVYVAGAWRFVQCNWGARH 566
LH ++ Y+ + + D F + ++ H
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-----HI------------GHH 480
Query: 567 LVNAK------EVPKV-------GAKGKSDSLRHLDSAKQVLKVGAKGKSDSLRYEYDDH 613
L N + V K +RH +A L++ Y +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQK-----IRHDSTAWNASGSILNTLQQ-LKF-YKPY 533
Query: 614 YFLTDPR--EFIYEF--FPLQPEWQLLKTSISLRDFEELPFVR-SLFFRYGLYFPDTNTK 668
DP+ + F + E L+ + + +R +L F + + +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICS-------KYTDLLRIALMAEDEAIFEEAHKQ 586
Query: 669 A 669
Sbjct: 587 V 587
Score = 35.2 bits (80), Expect = 0.14
Identities = 49/327 (14%), Positives = 90/327 (27%), Gaps = 96/327 (29%)
Query: 854 QDIVS-FIINFPEEGQYGFDVY-----------TREISPDHRAGSPGSKSASGR--KCLL 899
+DI+S F F + FD EI DH S + S + R LL
Sbjct: 19 KDILSVFEDAFVDN----FDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLL 72
Query: 900 ---THCCKRLTE-------PWAVLKDIFFRYGLYFPDTNTKAVMYTDQTGEYW------- 942
++ E + + + P T+ MY +Q +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTR--MYIEQRDRLYNDNQVFA 127
Query: 943 ------AQTLTEL-NCLQS-----WIAKFSDAAEGSRFEFKS----PACKASAVTTTP-- 984
Q +L L + G K+ C + V
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-----KTWVALDVCLSYKVQCKMDF 182
Query: 985 ---W----------DMIKEVWRLNSYMHRINPSIEDKCNQCSQSPHDTP-------HLFN 1024
W +++ + +L ++I+P+ + + S L
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 1025 CPGRPTTLTVID-LWQNPIATAEFLELPTALLVLIQYFLIFPYFRYEYDDHYFLTDPREF 1083
L V+ + A F L +L+ ++ + + H L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNA-F-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM- 296
Query: 1084 IYEFFPLQPEWQLLKTSISLRDFEELP 1110
P + + LL + R ++LP
Sbjct: 297 --TLTPDEVK-SLLLKYLDCR-PQDLP 319
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 2e-06
Identities = 58/312 (18%), Positives = 98/312 (31%), Gaps = 116/312 (37%)
Query: 638 TSISLRDFEEL--PFVRSLFFRYGL----YFPDTNTKAVMYTDQTGAATVRIAMPVNMQS 691
+ S F + LFF G+ +P+T+ P ++
Sbjct: 285 ETDSWESFFVSVRKAITVLFF-IGVRCYEAYPNTSLP-----------------PSILED 326
Query: 692 SLIFHYNLKLYDGDGD---MLDGVS-LKRFVMQSVVGNIVSFRVHAPAAAEFLLDVFANS 747
SL + +G ML +S L + +Q V H PA + + + N
Sbjct: 327 SL--------ENNEGVPSPML-SISNLTQEQVQDYVN---KTNSHLPAGKQVEISLV-NG 373
Query: 748 VTPREY-LTGEPMKFKSVCKFKIVCTELYTVMVPLPDCASG---------EWGPTKATRL 797
+ ++G P +S+ L P SG E + R
Sbjct: 374 --AKNLVVSGPP---QSLYGL---NLTLRKAKAP-----SGLDQSRIPFSERKLKFSNR- 419
Query: 798 FGLIPITHP-------------------EALIFAGKEMEIQFRMSKPLTDFMSTLHKNGA 838
F L P+ P + F K+++I P+ D +G+
Sbjct: 420 F-L-PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI------PVYDT-----FDGS 466
Query: 839 DEKKLNKCVTHRILDQDIVSFIINFPEEGQYGFDVYTREISPDHRA--GSPGSKSASGRK 896
D + L+ ++ RI+D I+ + + T + H G PG S G
Sbjct: 467 DLRVLSGSISERIVDC-IIRLPVKWET---------TTQFKATHILDFG-PGGASGLGV- 514
Query: 897 CLLTHCCKRLTE 908
LTH R +
Sbjct: 515 --LTH---RNKD 521
Score = 49.3 bits (117), Expect = 8e-06
Identities = 89/545 (16%), Positives = 142/545 (26%), Gaps = 202/545 (37%)
Query: 5 SLDKDEQTRLEMKHRQEEDDLYRIFARQREEEDNRIKQE-----FRHRGIIGGFHPLFTV 59
L ++ T L +L + + R ++ FR + G L +
Sbjct: 107 KLLQENDTTLVKTK-----ELIKNYITARIMAKRPFDKKSNSALFRA--VGEGNAQLVAI 159
Query: 60 ----KNLNTMSFDDNITGDTPMGLLRGIKHGTESYHVLFKRLCRQFFEIVETQPSLLENS 115
N + F++ LR + ++YHVL L + E + L+ +
Sbjct: 160 FGGQGNTDDY-FEE----------LRDL---YQTYHVLVGDLIKFSAETLS---ELIRTT 202
Query: 116 IGTSYYMYIGL-----YPGPSTYNDGKYGHFALGN---TLGLIEGLTKNA--ETVCTLEK 165
+ GL PS D Y L + + LI G+ + A
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDY----LLSIPISCPLI-GVIQLAHYVVTA---- 253
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSVVGNIVSFRVHAPAAA---- 221
K + ++ L G T +V+ A A
Sbjct: 254 ----------------KLLGFTPGELRSYLK-----GATGHSQGLVT--AVAIAETDSWE 290
Query: 222 EFLLDVFANSVTPREYLTGEPMKFKSVCKFKI--VCTELYTVMVPLP----DC-ASGEWG 274
F F + L F I C E Y P D + E
Sbjct: 291 SF----FVSVRKAITVL------------FFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 275 PT--------KATRLFGLIPITHPVAQEDQHTFTDLV-------------------RQLA 307
P+ ++ + T+ + LV L
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 308 GRHATSDIEKARTLF--RWITVKNLNTMSFDDNMAGDTPMG------LLRG----IKHGT 355
A S ++++R F R + + F P+ LL I
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKF----SNRFL-------PVASPFHSHLLVPASDLINKDL 443
Query: 356 ESYHVLFKRLCSLVRYYGGCSIDIEKPAIYVAQEDQHTFT--DLVRQLAGRHATSDIEKA 413
+V F I I P +Y TF DL R + I +
Sbjct: 444 VKNNVSFN----------AKDIQI--P-VY------DTFDGSDL------RVLSGSI--S 476
Query: 414 RTLFRWITVKNLNTMSFDDNMA------GDTPMGLLRGIKHGTESYHVLFKRLCRG---- 463
+ I + + A G P G G+ G L R G
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFG--P-GGASGL--GV-----LTHRNKDGTGVR 526
Query: 464 -IIAG 467
I+AG
Sbjct: 527 VIVAG 531
Score = 45.0 bits (106), Expect = 2e-04
Identities = 62/407 (15%), Positives = 119/407 (29%), Gaps = 140/407 (34%)
Query: 794 ATRLFGL--------IPITHPEALIFAGKEMEIQFRMSKPL-TDFMSTLHKNGADEKKLN 844
+TR L + + P A F +++ QF P T+ +
Sbjct: 5 STRPLTLSHGSLEHVLLV--PTASFFIASQLQEQFNKILPEPTEGFA------------- 49
Query: 845 KCVTHRILDQDIVSFIINFPEE--GQY-GFDVYTREISPDHRAGSPGSKSASGRKCLLTH 901
D + + P E G++ G+ + + P SK + L
Sbjct: 50 -------ADDEPTT-----PAELVGKFLGY--VSSLVEP--------SKVGQFDQVLN-- 85
Query: 902 CCKRLTEPWAVLKDIFFRYGLYFPDTNTKAVMYTDQTGEYWAQTLTELNCLQSWIAKFSD 961
L + F L D + A + T L + I +
Sbjct: 86 ---------LCLTE-FENCYLEGNDIHALAAKLLQEND-------TTLVKTKELIKNYIT 128
Query: 962 AAEGSRFEFKSP-------ACKASAV-----------TTTPWDMIKEVWRLNSYMHRINP 1003
A ++ F A T ++ +++++ +Y +
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY--QTYHVLVGD 186
Query: 1004 SIE---DKCNQCSQSPHDTPHLFNCPGRPTTLTVIDLW-QNPIAT--AEFLE-----LPT 1052
I+ + ++ ++ D +F L +++ W +NP T ++L P
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVF-----TQGLNILE-WLENPSNTPDKDYLLSIPISCP- 239
Query: 1053 ALLVLIQYFLIFPYFRYEYDDHYFLT------DPREFIYEFFPLQPEWQ------LLKTS 1100
L+ +IQ L HY +T P E Q + +
Sbjct: 240 -LIGVIQ--LA----------HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 1101 ISLRDFEEL--PFVRSLFFRYGL----YFPDTNTKAVMYTD--QTGE 1139
S F + LFF G+ +P+T+ + D + E
Sbjct: 287 DSWESFFVSVRKAITVLFF-IGVRCYEAYPNTSLPPSILEDSLENNE 332
Score = 40.8 bits (95), Expect = 0.003
Identities = 33/211 (15%), Positives = 64/211 (30%), Gaps = 67/211 (31%)
Query: 868 QYGFDVYTREISPD-------HRAGSPGSKSASGRKCLLTHCCKRLTEPWAVLKDIFFRY 920
YGF + +I + H G G + R+ + + + + IF
Sbjct: 1656 TYGFSI--LDIVINNPVNLTIHFGGEKGKRI---RENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 921 GLYFPDTNTKAVMYTDQTGE----YWAQ---TLTELNCLQSWIAKF---SDAAEGSRF-- 968
+ ++ + + + G + Q TL E + +K +DA F
Sbjct: 1711 -----NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT----FAG 1761
Query: 969 ----EFKSPACKASAVTTTPWDMIK----------------EVWRLNSYMHRINPS-IED 1007
E+ + A A ++ +++ E+ R N M INP +
Sbjct: 1762 HSLGEYAALASLADVMSIE--SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 1008 KCNQ------CSQSPHDTPHL-----FNCPG 1027
+Q + T L +N
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Score = 39.6 bits (92), Expect = 0.008
Identities = 35/146 (23%), Positives = 52/146 (35%), Gaps = 39/146 (26%)
Query: 24 DLYRIF--ARQ-REEEDNRIKQE--FRHRGII-----------GGFHPLFTVKNLNTMSF 67
DLY+ A+ DN K F I+ GG +N + M F
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 68 DDNITGDTPM-GLLRGIKHGTESYHVLF---KRLCR--QFFEIVETQPSLLENSIGTSYY 121
+ + G + + I + SY F K L QF TQP+L + +
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSATQF-----TQPALTLMEK--AAF 1744
Query: 122 MYI---GLYPGPSTYNDGKYGHFALG 144
+ GL P +T+ GH +LG
Sbjct: 1745 EDLKSKGLIPADATFA----GH-SLG 1765
Score = 38.9 bits (90), Expect = 0.013
Identities = 46/285 (16%), Positives = 80/285 (28%), Gaps = 115/285 (40%)
Query: 220 AAEFLLDVFANSVT------PRE---YLTGEPMKFKSVCKFKIVCTELYTVMVPLPDCAS 270
A D + S+ P + GE K +I E Y+ M+ +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK-------RI--RENYSAMI----FET 1695
Query: 271 GEWGPTKATRLFGLIPIT-------HPVAQEDQHTFTDLVRQ---LAGRHATSDIEKART 320
G K ++F I FT Q +EKA
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT----QPALTL-------MEKA-- 1742
Query: 321 LFRWITVKNLNTMSFDDNMAGDTPMGLLRGIKH--GTESY-------HVL-FKRLCSLVR 370
F + K+ + D AG H G E Y V+ + L +V
Sbjct: 1743 AFEDL--KSKGLIPADATFAG-----------HSLG-E-YAALASLADVMSIESLVEVVF 1787
Query: 371 Y------------------YGGCSIDIEKPAIYVAQEDQHTFTDLV-------------- 398
Y YG +I+ + A +QE + V
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 399 ---RQ--LAGRHATSDIEKARTLFRWITVKNLN------TMSFDD 432
+Q AG ++ + +I ++ ++ ++S ++
Sbjct: 1848 VENQQYVAAGD--LRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 35.8 bits (82), Expect = 0.11
Identities = 43/321 (13%), Positives = 96/321 (29%), Gaps = 102/321 (31%)
Query: 215 VHAPAAAEFL----LDVFA-----NSVTPREYLTGEPMKFKSVCKFKIVCTELYTVMVPL 265
+ AE + L++ ++ ++YL P+ + ++ Y V
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH---YVVT--- 252
Query: 266 PDCASGEWGPTK-ATRLFGL------IPITHPVAQEDQ-HTFTDLVRQLAGRHATSDIEK 317
+ P + + L G + +A+ D +F VR K
Sbjct: 253 --AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR------------K 298
Query: 318 A-RTLFRWITVK--------NLNTMSFDDNMAGD----TPMGLLRGIKHGTESYHVLFKR 364
A LF +I V+ +L +D++ + +PM + + +
Sbjct: 299 AITVLF-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-----VQDY 352
Query: 365 LCSLVRYYGGCSIDIEKPAIYVA---QEDQHTFT-------DLVRQLAGRHATSDIEKAR 414
+ + + + ++ + L L A S ++++R
Sbjct: 353 V-NKTNSHLP-----AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 415 TLF--RWITVKNLNTMSFDDNMAGDTPMG------LLRGIKHGTESYHVLFKRLCRGIIA 466
F R + + F P+ LL + ++ K L + ++
Sbjct: 407 IPFSERKLKF----SNRFL-------PVASPFHSHLL------VPASDLINKDLVKNNVS 449
Query: 467 GFYPLFTVKNLNTMSFDNMTG 487
F K++ +D G
Sbjct: 450 -----FNAKDIQIPVYDTFDG 465
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 39.0 bits (90), Expect = 0.004
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 7 DKDEQTR-----LEMKHRQEEDDLYRIFARQRE--EEDNRIKQE-FR 45
+ D ++ K +++ ++ + + Q E + +NRI + F
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
Score = 30.9 bits (69), Expect = 1.5
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 13/42 (30%)
Query: 164 EKAKKKKKKKKKKKKKKKK-------------KKKKSSNKIA 192
E K +++ ++K KK +K K +N+IA
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Score = 30.1 bits (67), Expect = 2.7
Identities = 7/42 (16%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 10 EQTRLE---MKHRQEEDDLYRIFARQREEEDNRIKQEFRHRG 48
++ E ++ +EE R+ ++ + ++QE+R +
Sbjct: 78 DRLTQEPESIRKWREEQRK-RL--QELDAASKVMEQEWREKA 116
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 34.3 bits (78), Expect = 0.058
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSN 189
KA KK K +K K KKKK+
Sbjct: 8 KAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 32.7 bits (74), Expect = 0.17
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ + K KK K +K K KK K
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRK 30
Score = 32.0 bits (72), Expect = 0.38
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
K K +K K KKKK+K+K S I
Sbjct: 10 AKKAGKAQKNITKTDKKKKRKRKESYAI 37
Score = 30.8 bits (69), Expect = 0.77
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K K KK K +K K K +
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKR 29
Score = 30.8 bits (69), Expect = 0.82
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
KK K +K K KKKK K
Sbjct: 7 GKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 30.4 bits (68), Expect = 1.4
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNK 190
K K KK K +K K+ K
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTDKK 26
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 33.1 bits (75), Expect = 0.11
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+KA K K K+KKKK S K
Sbjct: 6 DKAPPPSSKPAKSGGGKQKKKKWSKGKQ 33
Score = 32.7 bits (74), Expect = 0.18
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
K+ + + AK K+KKKK K K+K+K +N +
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNSV 41
Score = 30.7 bits (69), Expect = 0.66
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
K K K+KKKK K + V+F
Sbjct: 10 PPSSKPAKSGGGKQKKKKWSKGKQKEKVNNSVLF 43
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 32.7 bits (74), Expect = 0.14
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
++ K K KK KKK S +
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKKWSKKSM 32
Score = 31.5 bits (71), Expect = 0.36
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
KA K KK KKK KKS A VI
Sbjct: 9 KAAKAAAALAGGKKSKKKWSKKSMKDRAQHAVIL 42
Score = 31.1 bits (70), Expect = 0.61
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K + K K KK KK +K
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSK 29
Score = 30.0 bits (67), Expect = 1.4
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K KK KKK K S K
Sbjct: 7 LSKAAKAAAALAGGKKSKKKWSKKSMK 33
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 34.9 bits (80), Expect = 0.15
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSN 189
+ KKKKKKKKK+ K ++
Sbjct: 89 DGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 34.1 bits (78), Expect = 0.29
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
E KKKKKKKKK+ + P
Sbjct: 86 EDGDGDGDGATGKKKKKKKKKRGPKVQTDP 115
Score = 33.4 bits (76), Expect = 0.47
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVI 197
+ KKKKKKKKK+ P + I
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPI 120
Score = 33.0 bits (75), Expect = 0.68
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+ KKKKKKKKK K+
Sbjct: 84 DDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 31.4 bits (71), Expect = 1.7
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E + KKKKKKKK
Sbjct: 83 EDDEDGDGDGDGATGKKKKKKKKKRGP 109
Score = 30.7 bits (69), Expect = 3.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKK 183
++ E KKKKKKKKK+ K
Sbjct: 82 DEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 30.7 bits (69), Expect = 3.1
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
++ + KKKKKKK Q
Sbjct: 82 DEDDEDGDGDGDGATGKKKKKKKKKRGPKVQ 112
Score = 29.1 bits (65), Expect = 9.4
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
E+ + + KKKKK K P+
Sbjct: 80 ERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 34.4 bits (78), Expect = 0.19
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
K KK K +K K K I
Sbjct: 291 LKTGKKNSKMTAAQKALAKVDKSGMKSI 318
Score = 32.9 bits (74), Expect = 0.58
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
++ T + KK K +K K KS K
Sbjct: 280 KEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMK 316
Score = 31.0 bits (69), Expect = 2.4
Identities = 11/52 (21%), Positives = 13/52 (25%), Gaps = 11/52 (21%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKKKKKKK-----------KKKKKSSNKI 191
E TK K K +K K K K + KI
Sbjct: 281 EDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGKI 332
Score = 30.2 bits (67), Expect = 3.7
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E + K K K KK K ++ +
Sbjct: 278 EAKEDYTKFNTKDLKTGKKNSKMTAAQ 304
Score = 29.8 bits (66), Expect = 5.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+AK+ K K K KK K +
Sbjct: 277 VEAKEDYTKFNTKDLKTGKKNSKMTAA 303
Score = 29.4 bits (65), Expect = 7.5
Identities = 9/33 (27%), Positives = 10/33 (30%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKS 187
+ E V E K K K KK K
Sbjct: 272 LSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQ 304
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 32.8 bits (74), Expect = 0.20
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
KK KK K +KK KK+K S K
Sbjct: 10 APKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 32.4 bits (73), Expect = 0.26
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+ +KK K +KK KK+KK +K S I
Sbjct: 13 KGSKKAVTKTQKKGDKKRKKSRKESYSI 40
Score = 32.1 bits (72), Expect = 0.37
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E AK KK KK K +KK K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKK 29
Score = 31.3 bits (70), Expect = 0.59
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
A KK KK K +KK KK+ ++
Sbjct: 9 PAPKKGSKKAVTKTQKKGDKKRKKSR 34
Score = 31.3 bits (70), Expect = 0.73
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ A KK KK K +KK K K
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKKRKK 32
Score = 30.9 bits (69), Expect = 0.87
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSN 189
K KK K +KK KK+KKS
Sbjct: 10 APKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 30.1 bits (67), Expect = 1.5
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
KK KK K +KK KK
Sbjct: 8 APAPKKGSKKAVTKTQKKGDKKRKKS 33
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 33.6 bits (76), Expect = 0.24
Identities = 4/33 (12%), Positives = 13/33 (39%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLV 196
+K ++ ++ +K K+K+ +
Sbjct: 20 QKTAEQVAAERAARKAANKEKRAIILERNAAYQ 52
Score = 32.1 bits (72), Expect = 0.82
Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
K + + A ++ +K K+K+ ++
Sbjct: 17 KAQQKT-AEQVAAERAARKAANKEKRAIILER 47
Score = 29.8 bits (66), Expect = 4.6
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 158 ETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
E+ KA++K ++ ++ +K K I
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAI 43
Score = 29.4 bits (65), Expect = 5.6
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
+ +K K+K+ ++
Sbjct: 27 AAERAARKAANKEKRAIILERNAA 50
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 33.6 bits (76), Expect = 0.30
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+K K ++KKKK+ K K K+++ + K+
Sbjct: 83 KKPKPQEKKKKQPAKTKPGKRQRMALKLEAD 113
Score = 32.5 bits (73), Expect = 0.64
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
KK K ++KKKK+ K K ++A +L
Sbjct: 79 PPKPKKPKPQEKKKKQPAKTKPGKRQRMALKL 110
Score = 32.1 bits (72), Expect = 0.83
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
++ K KK K ++KKKK+ K K + L
Sbjct: 77 KQPPKPKKPKPQEKKKKQPAKTKPGKRQRMAL 108
Score = 31.7 bits (71), Expect = 1.3
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
++KK+ K+ K KK K + K P
Sbjct: 66 RPPPRQKKQAPKQPPKPKKPKPQEKKKKQPA 96
Score = 30.5 bits (68), Expect = 3.0
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 164 EKAKKKKKKKK--------KKKKKKKKKKKKSSNKIAPQLVIFMNI 201
+ ++KK+ K K ++KKKK+ + K + + + +
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKL 110
Score = 29.4 bits (65), Expect = 5.5
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ + ++KK+ K+ K KK + +
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKK 93
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 33.3 bits (75), Expect = 0.46
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
K K KK KK KK KK ++ K A
Sbjct: 365 KGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAA 403
Score = 32.5 bits (73), Expect = 0.80
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K + ++K KK KK KK KK + K
Sbjct: 375 KKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
Score = 32.2 bits (72), Expect = 1.0
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K KK KK KK K + P
Sbjct: 384 KKPKKPVVGKKAAATKKPAADKKPAEKKPT 413
Score = 32.2 bits (72), Expect = 1.1
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
KK KK KK KK + K A +
Sbjct: 381 VGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
Score = 32.2 bits (72), Expect = 1.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKK---KKKKSSNK 190
K+ E +K ++KK KK KK KK KK ++ K
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Score = 31.4 bits (70), Expect = 1.8
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
KK KK KK +KK ++ + P
Sbjct: 391 VGKKAAATKKPAADKKPAEKKPTTEEKKP 419
Score = 31.0 bits (69), Expect = 2.2
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K KK KK KK + K +
Sbjct: 386 PKKPVVGKKAAATKKPAADKKPAEKKPTTE 415
Score = 30.6 bits (68), Expect = 3.5
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
KK KK KK +KK + +
Sbjct: 389 PVVGKKAAATKKPAADKKPAEKKPTTE 415
Score = 30.2 bits (67), Expect = 4.3
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
L +E K ++KK KK KK KK A
Sbjct: 356 AALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAA 397
Score = 29.8 bits (66), Expect = 5.3
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKS 187
+ KK KK KK +K
Sbjct: 388 KPVVGKKAAATKKPAADKKPAEKK 411
Score = 29.8 bits (66), Expect = 5.7
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
+ K KK KK +KK + K
Sbjct: 390 VVGKKAAATKKPAADKKPAEKKPTTEEKKPA 420
Score = 29.5 bits (65), Expect = 7.3
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAP 193
+K KK KK KK KK + A
Sbjct: 373 RRKKGKKTVGVKKPKKPVVGKKAAATKKPAAD 404
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L
1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M*
1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Length = 114
Score = 31.4 bits (72), Expect = 0.50
Identities = 3/31 (9%), Positives = 14/31 (45%)
Query: 168 KKKKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
++K + ++K + ++ +L ++
Sbjct: 2 ATATTIRRKLRTRRKVRTTTAASGRLRLSVY 32
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 32.9 bits (74), Expect = 0.54
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 165 KAKKKKKKKKKKKKKKKK----KKKKSSNKIAPQLVIFMNIGTTSV 206
K K KK KK+ +K+ + AP + G T V
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLV 50
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 32.1 bits (72), Expect = 0.57
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
EKA ++ K+KK +KK+ +K K
Sbjct: 108 EKAVRELKQKKANDIEKKRADRKLQGKDVKA 138
Score = 29.7 bits (66), Expect = 3.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+KA+ +K ++ K+KK +KK +++
Sbjct: 103 KKAEAEKAVRELKQKKANDIEKKRADRKLQG 133
Score = 29.4 bits (65), Expect = 4.5
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ K+KK +KK+ +K + K A +
Sbjct: 112 RELKQKKANDIEKKRADRKLQGKDVKAAKK 141
Score = 29.4 bits (65), Expect = 4.7
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ ++ K+KK +KK+ +K +
Sbjct: 109 KAVRELKQKKANDIEKKRADRKLQGKDVKAA 139
Score = 29.0 bits (64), Expect = 5.9
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ +K ++ K+KK +KK++ K+ +
Sbjct: 104 KAEAEKAVRELKQKKANDIEKKRADRKLQGK 134
Score = 29.0 bits (64), Expect = 6.2
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ + K+KK +KK+ +K + K
Sbjct: 111 VRELKQKKANDIEKKRADRKLQGKDVKAAKKA 142
Score = 28.6 bits (63), Expect = 6.7
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
L++ K +KK+ +K + K K++ K +
Sbjct: 114 LKQKKANDIEKKRADRKLQGKDVKAAKKAETK 145
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 31.8 bits (72), Expect = 0.57
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNK 190
A K KK K ++ K K+
Sbjct: 2 APKAAVKKADGKTQQALKVAKAVKS 26
Score = 31.8 bits (72), Expect = 0.67
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKK 186
KA KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVK 25
Score = 30.6 bits (69), Expect = 1.6
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
KK K ++ K K K S +
Sbjct: 6 AVKKADGKTQQALKVAKAVKSGSIKR 31
Score = 29.8 bits (67), Expect = 2.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
+ + K K K K+K KK
Sbjct: 13 KTQQALKVAKAVKSGSIKRKSKK 35
Score = 29.5 bits (66), Expect = 3.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSS 188
+A K K K K+K KK ++S
Sbjct: 16 QALKVAKAVKSGSIKRKSKKIRTS 39
Score = 29.5 bits (66), Expect = 3.6
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K K ++ K K K K
Sbjct: 6 AVKKADGKTQQALKVAKAVKSGSIKRK 32
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 32.2 bits (73), Expect = 0.58
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 155 KNAETVCTLEKAKKKKKK---KKKKKKKKKKKKKKSSNKIAPQ 194
+ LE+ ++ + K KK K+ +KK+ ++ +
Sbjct: 147 GKQTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAI 189
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 31.7 bits (71), Expect = 0.62
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+ K K+ K + KK KKK + K
Sbjct: 9 QKKTKEAIAKAAQAKKGGKKKWTKGKA 35
Score = 30.9 bits (69), Expect = 1.0
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
K K + KK KKK K K+ +K+ V
Sbjct: 13 KEAIAKAAQAKKGGKKKWTKGKAKDKVN-HAVFI 45
Score = 30.5 bits (68), Expect = 1.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSS 188
KK K+ K + KK KKK +
Sbjct: 8 GQKKTKEAIAKAAQAKKGGKKKWT 31
Score = 30.5 bits (68), Expect = 1.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+K K+ K + KK KKK K K
Sbjct: 10 KKTKEAIAKAAQAKKGGKKKWTKGKAK 36
Score = 29.4 bits (65), Expect = 3.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
+KK K+ K + KK KK K
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTK 32
Score = 29.4 bits (65), Expect = 3.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKK 185
KA + KK KKK K K K K
Sbjct: 17 AKAAQAKKGGKKKWTKGKAKDK 38
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 30.7 bits (69), Expect = 0.65
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNK 190
++K+K+ KK K+K+ KKKK N+
Sbjct: 81 ERKRKESPKKNKEKRMKKKKRLNR 104
Score = 30.7 bits (69), Expect = 0.73
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 158 ETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
E + E+ +K+ KK K+K+ KKKK+
Sbjct: 75 EVLYVDERKRKESPKKNKEKRMKKKKRLN 103
Score = 30.0 bits (67), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
K K+ KK K+K+ KKKK+ +
Sbjct: 82 RKRKESPKKNKEKRMKKKKRLNR 104
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 32.4 bits (73), Expect = 0.69
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSV 206
K K KK +KK+ +K+ + AP N+G T V
Sbjct: 7 KRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLV 48
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 32.2 bits (73), Expect = 0.70
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K + V LE +K + KK+ KK S+N
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANA 183
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 32.5 bits (73), Expect = 0.72
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
EK +K +K K + K +
Sbjct: 26 AEKKQKVAAEKIKAAENTKVIYAR 49
Score = 32.1 bits (72), Expect = 0.95
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+ K+K +K K + K + +
Sbjct: 26 AEKKQKVAAEKIKAAENTKVIYARAEQY 53
Score = 29.4 bits (65), Expect = 5.7
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 158 ETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
E V + ++ +KK+K +K K + K+
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVI 46
Score = 29.4 bits (65), Expect = 6.1
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
+K +K K + K + ++
Sbjct: 29 KQKVAAEKIKAAENTKVIYARAEQ 52
Score = 28.6 bits (63), Expect = 9.2
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+ +KK+K +K K + +
Sbjct: 21 EEVWAAEKKQKVAAEKIKAAENTKVIY 47
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 32.1 bits (72), Expect = 0.78
Identities = 7/38 (18%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
+N + +++ +KK K +K ++K +K+ +
Sbjct: 45 RNFAEL-KVKRLRKKFALKTLRKARRKLIYEKAKHYHK 81
Score = 30.2 bits (67), Expect = 3.1
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+ + ET+ + + K K+ +KK K +K+ K+
Sbjct: 31 KKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKL 71
Score = 29.1 bits (64), Expect = 7.8
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 151 EGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
E L K L+ + +KK K +K ++K
Sbjct: 38 ETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIY 73
>3kd4_A Putative protease; structural genomics, joint center for STR
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc
8503}
Length = 506
Score = 32.5 bits (73), Expect = 0.84
Identities = 26/204 (12%), Positives = 54/204 (26%), Gaps = 25/204 (12%)
Query: 504 YHVLFKLLCSYAGLHCVVIKGYSKSAGYQ-PGVKFEDNRFRNSWNAVYVAGAWRFVQCNW 562
L ++ + AG+ V+ Y G+ + V G +++ +
Sbjct: 290 IAQLLNVMLNAAGIPSEVLAVYPGHLDTDACGL----AAIQTLAVKATVDGKDQYLSASP 345
Query: 563 GARHLVNAKEVPKVGAKGKSDSLRHLDSAKQVLKVGAKGKSDSLRYEYDDHYFLTDPREF 622
K V G + ++ + + + A D L
Sbjct: 346 LTNRGGLDKVVSLSGTSIEIETTPIQIKESRSVAISADQAKDGFA-----ICVLPAISAG 400
Query: 623 IYEFFPLQPEWQLLKTSISLRDFEELPFVRSLFFRYGLYFPDTNTKAVMYTDQT-----G 677
I W + + + ELP + Y + + +Q G
Sbjct: 401 ID-------SWGMSALNSKRSNLFELPSLIREEVTYTVTPAEGMKLQTSTQEQVISKPFG 453
Query: 678 AATVRIAMPVNMQSSLIFHYNLKL 701
T I N ++ ++L
Sbjct: 454 KVTRTITPRGN---TIEVVRTIEL 474
Score = 31.4 bits (70), Expect = 1.9
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 386 VAQEDQHTFTDLVRQLAGRHATSDIEKARTLFRWITVKNLNTMSFDDNMAGDTPMGLLRG 445
+ + + + L + + ++ EK + I NL+T M G T +
Sbjct: 222 LKESQGYESKTFAQFLTDK-SGNEQEKVNIIRDHIL-NNLSTCPIPMAMTGYTVRDIDTV 279
Query: 446 IKHGT---ESYHVLFKRLCR--GIIA 466
++ L + GI +
Sbjct: 280 LRSAYGTPLEIAQLLNVMLNAAGIPS 305
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 31.2 bits (70), Expect = 0.89
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLV 196
E+ K K+KKK +K +K +K S
Sbjct: 106 EEKLKANKEKKKAEKAARKAEKAKSAGTQSSKF 138
Score = 30.5 bits (68), Expect = 1.7
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
L+ K+KKK +K +K +K K + + +
Sbjct: 109 LKANKEKKKAEKAARKAEKAKSAGTQSSKFSK 140
Score = 29.7 bits (66), Expect = 3.3
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 137 KYGHFALGNTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K G +L LI+ V + +K K K+KKK +K +K + + Q
Sbjct: 77 KAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQ 134
Score = 28.9 bits (64), Expect = 6.3
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
EKA +K +K K + K K+ + ++
Sbjct: 119 EKAARKAEKAKSAGTQSSKFSKQQAKGAFQKV 150
Score = 28.2 bits (62), Expect = 9.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+KKK +K +K +K K S+K + Q
Sbjct: 111 ANKEKKKAEKAARKAEKAKSAGTQSSKFSKQ 141
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 32.1 bits (72), Expect = 0.91
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
EK +K K +++K + K++K
Sbjct: 17 EKLRKAKAEQRKASSAQMKQRKA 39
Score = 32.1 bits (72), Expect = 0.97
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
KA+++K + K++K + K
Sbjct: 21 KAKAEQRKASSAQMKQRKAEWISK 44
Score = 29.7 bits (66), Expect = 4.5
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
E+ K + K++K + K +K
Sbjct: 24 AEQRKASSAQMKQRKAEWISKAQK 47
Score = 29.7 bits (66), Expect = 5.0
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 158 ETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E V +K + +K +K K +++K + +
Sbjct: 7 ENV--QKKLARDEKLRKAKAEQRKASSAQMKQR 37
Score = 29.4 bits (65), Expect = 5.4
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+ +++K + K++K + + K
Sbjct: 21 KAKAEQRKASSAQMKQRKAEWISKAQKY 48
Score = 28.6 bits (63), Expect = 10.0
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ +K + K++K + K +
Sbjct: 25 EQRKASSAQMKQRKAEWISKAQKYAA 50
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 30.0 bits (68), Expect = 0.95
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 172 KKKKKKKKKKKKKKKSSNK 190
++ KK+ +KKK N
Sbjct: 2 VTPREPKKRTTRKKKDPNA 20
Score = 27.7 bits (62), Expect = 6.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKK 186
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 30.7 bits (70), Expect = 1.1
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNKIA 192
AK K ++ + +K S+ KI
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASARKIP 28
Score = 30.7 bits (70), Expect = 1.1
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMN--IGTTSVVGNIVS 212
K ++ + +K +K + F N + T V G +VS
Sbjct: 5 IPKIGSRRNGRISSRKSASARKIPKGVIHVQASFNNTIVTVTDVRGRVVS 54
Score = 28.8 bits (65), Expect = 4.4
Identities = 3/22 (13%), Positives = 7/22 (31%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKK 186
K K ++ + +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASA 24
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 31.0 bits (70), Expect = 1.1
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFM--N---IGTTSVVGNIVSFRV 215
A KK +K+ ++ + I N I T + G RV
Sbjct: 2 APKKTAPVQKEVISYGPPNVGANENVFGVCHIMATWNDTFIHVTDLSGRETLVRV 56
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 1.2
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 22/45 (48%)
Query: 178 KKKKKKKKKSSNKI-APQLVIFMNIGTTSVVGNIVSFRVHAPAAA 221
+K+ KK ++S K+ A S APA A
Sbjct: 18 EKQALKKLQASLKLYADD-----------------S----APALA 41
Score = 30.3 bits (67), Expect = 2.2
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 8/28 (28%)
Query: 713 SLKRFVMQSVVGNIVSFRVHAPAAAEFL 740
+LK+ +Q+ S +++A +A L
Sbjct: 21 ALKK--LQA------SLKLYADDSAPAL 40
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 30.0 bits (68), Expect = 1.3
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKS 187
K +K++ KK K + +
Sbjct: 90 KRVGDYYVFEKRESKKSKGGEAA 112
Score = 30.0 bits (68), Expect = 1.4
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E + K+ +K++ KK K
Sbjct: 83 VPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.8 bits (65), Expect = 3.7
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSS 188
E + +K++ KK K +++
Sbjct: 88 EMKRVGDYYVFEKRESKKSKGGEAA 112
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 31.5 bits (71), Expect = 1.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
A+T+ LE+ +K+K K ++K+ K + + K A
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAA 190
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 31.7 bits (71), Expect = 1.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
E +K K++ K +K K KK S
Sbjct: 349 EASKAKRQATLKANRKAAKTHKKGSQAWI 377
Score = 31.7 bits (71), Expect = 1.4
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+A K K++ K +K K K ++
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQ 374
Score = 30.9 bits (69), Expect = 2.5
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ ++ K +K K KK ++
Sbjct: 352 KAKRQATLKANRKAAKTHKKGSQAWIA 378
Score = 30.6 bits (68), Expect = 3.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
KA + K K++ K +K K+ K
Sbjct: 346 KAAEASKAKRQATLKANRKAAKTHKK 371
Score = 30.2 bits (67), Expect = 4.0
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+++ KK + K K++ K + + K +
Sbjct: 339 IVKEQAKKAAEASKAKRQATLKANRKAAKTHKK 371
Score = 30.2 bits (67), Expect = 4.5
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
K K++ K +K K KK S IA
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIA 378
Score = 29.0 bits (64), Expect = 8.8
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLV 196
K +K K KK + + +
Sbjct: 357 ATLKANRKAAKTHKKGSQAWIAAFNKANEEAIA 389
Score = 29.0 bits (64), Expect = 9.4
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 157 AETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
A+ V K + K K++ K +K ++K Q
Sbjct: 337 AKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQ 374
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 30.8 bits (69), Expect = 1.4
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ AK+ KK K+ KK K + Q
Sbjct: 109 IRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQ 140
Score = 30.4 bits (68), Expect = 1.6
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
KA++++ + K+ KK K+ K + A +
Sbjct: 101 RKAQREQAIRAAKEAKKAKQASKKTAMAAAK 131
Score = 30.4 bits (68), Expect = 2.1
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ +++ + K+ KK K+ KK++ A
Sbjct: 102 KAQREQAIRAAKEAKKAKQASKKTAMAAAKA 132
Score = 28.9 bits (64), Expect = 6.5
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
++ + K+ KK K+ KK +
Sbjct: 106 EQAIRAAKEAKKAKQASKKTAMAAAKAP 133
Score = 28.9 bits (64), Expect = 6.8
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ + K+ KK K+ KK ++ K +
Sbjct: 106 EQAIRAAKEAKKAKQASKKTAMAAAKAPTK 135
Score = 28.5 bits (63), Expect = 7.1
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 144 GNTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
G +L I V ++ + + K+ KK K+ KK + AP
Sbjct: 84 GASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPT 134
Score = 28.5 bits (63), Expect = 8.9
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K K K K+K K AP+
Sbjct: 121 ASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 31.7 bits (72), Expect = 1.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSS 188
++AE L+ + +K +KKKKKK K + +S
Sbjct: 357 QDAELKALLQSSASRKTQKKKKKKASKTAENATS 390
Score = 30.5 bits (69), Expect = 3.8
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 158 ETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ L ++ +K +KKKKKK K + +++ +
Sbjct: 359 AELKALLQSSASRKTQKKKKKKASKTAENATSGETLE 395
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 31.6 bits (71), Expect = 1.5
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 161 CTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
+ +KK K++ + KK ++ K S +
Sbjct: 251 PAFKPTEKKFTKEQYAAESKKYRQTKLSKE 280
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 30.8 bits (69), Expect = 1.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKS 187
E A ++ K++ KK K +KK KK
Sbjct: 109 EAALREIKERIKKTKDEKKAKKAE 132
Score = 30.4 bits (68), Expect = 1.8
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 144 GNTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLV 196
G TL +I+ V + ++ K++ KK K +KK K + Q
Sbjct: 87 GATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKT 139
Score = 29.3 bits (65), Expect = 4.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ K++ KK K +KK KK + S K +
Sbjct: 113 REIKERIKKTKDEKKAKKAEVAKSQKTQSK 142
Score = 28.5 bits (63), Expect = 8.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
K + KK K +KK KK + K + +
Sbjct: 116 KERIKKTKDEKKAKKAEVAKSQKTQSKGGA 145
Score = 28.1 bits (62), Expect = 9.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQL 195
++ K++ KK K +KK KK + + Q
Sbjct: 110 AALREIKERIKKTKDEKKAKKAEVAKSQKTQS 141
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 31.4 bits (70), Expect = 1.8
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
L +A + K +K+K K+ K + + K+ +
Sbjct: 346 LAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAW 381
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 29.6 bits (66), Expect = 1.9
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E+ K+ + K K+ K + K
Sbjct: 1 ERLTKEAAAVAEGKSKQDASPKPYAVK 27
Score = 29.2 bits (65), Expect = 2.8
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKK 185
L K + K K+ K
Sbjct: 3 LTKEAAAVAEGKSKQDASPKPYA 25
Score = 28.8 bits (64), Expect = 4.1
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSVVGNI--VSFRVHAPAA 220
++A + K K+ K K L+ + ++ + V PA
Sbjct: 4 TKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPAL 63
Query: 221 AE 222
+
Sbjct: 64 CK 65
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 30.5 bits (69), Expect = 1.9
Identities = 3/36 (8%), Positives = 5/36 (13%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K A A ++
Sbjct: 142 KAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 177
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 30.1 bits (66), Expect = 2.0
Identities = 2/25 (8%), Positives = 4/25 (16%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKK 186
L K + +
Sbjct: 112 RLANEAGSTGSAPATGGVXKPHRYR 136
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 30.8 bits (69), Expect = 2.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
K TLE+ +K+K K +KKK+ + +K + K
Sbjct: 148 KYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEK 183
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 28.9 bits (65), Expect = 2.3
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 171 KKKKKKKKKKKKKKKKSSNK 190
+ ++ +K KK N
Sbjct: 3 GASDRTGVRRPRKAKKDPNA 22
Score = 28.5 bits (64), Expect = 3.9
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 166 AKKKKKKKKKKKKKKKK-----KKKKSS 188
A + ++ +K KK K+ SS
Sbjct: 2 AGASDRTGVRRPRKAKKDPNAPKRALSS 29
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 30.3 bits (68), Expect = 2.3
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
E K +KK + +++ + + +IA
Sbjct: 155 EAVAKAAEKKVVRLTSRQRGRIAAQKRIA 183
Score = 29.5 bits (66), Expect = 4.8
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E+A K +KK + +++ + ++ K
Sbjct: 154 EEAVAKAAEKKVVRLTSRQRGRIAAQK 180
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 30.9 bits (70), Expect = 2.6
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
E +K ++ K K+K +K++ +K
Sbjct: 317 ETEEKMRRAKLAKEKAEKERLEK 339
Score = 30.9 bits (70), Expect = 2.6
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
+ K ++ K K+K +K++ +K+
Sbjct: 318 TEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.1 bits (68), Expect = 4.8
Identities = 5/27 (18%), Positives = 17/27 (62%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
++ + ++K ++ K K+K +K++ +
Sbjct: 314 KRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.7 bits (67), Expect = 5.1
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKK 185
E+ ++ K K+K +K++ +K+
Sbjct: 318 TEEKMRRAKLAKEKAEKERLEKQ 340
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 30.0 bits (68), Expect = 2.8
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKK 184
A V K +++ +KK + K
Sbjct: 129 AAASVVAREMKIVTERRAEKKADSRVTYSK 158
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 30.6 bits (69), Expect = 3.3
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 163 LEK--AKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFM 199
LEK A ++ K K+K+ +K S I+ Q I +
Sbjct: 46 LEKAFAAREIKSLASKRKEDLQKITFLSRDISQQFGINL 84
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 30.7 bits (69), Expect = 3.4
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSVVG 208
+ + K K+ +K S+ I V+F +G V
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNVIIIILCVVFSGLGGVIVYA 55
>2o6f_A 34 kDa membrane antigen; IG-fold, syphilis, metal-ION binding,
dimer, membrane protei protein binding; 1.63A {Treponema
pallidum} PDB: 2o6d_A 2o6e_A 2o6c_A
Length = 189
Score = 30.0 bits (67), Expect = 3.4
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 21/85 (24%)
Query: 659 GLYFPDTNTKAVMYTDQTGAATVRIAMPVNMQSSLIFHY--NLKLYDGDGDMLDGVSLKR 716
G + P A + + + P+N HY N+K +G G
Sbjct: 93 GDFVPYLRVVAFLQKHGSEKVQKVMFAPMNAGDG--PHYGANVKFEEGLGTYK------- 143
Query: 717 FVMQSVVGNIVSFRVHAPAAAEFLL 741
V F + AP+ E+ L
Sbjct: 144 ----------VRFEIAAPSHDEYSL 158
>3pjl_A 34 kDa membrane antigen; IG fold, metal binding, human lactoferrin,
membrane protein; 1.70A {Treponema pallidum} PDB: 3pjn_A
Length = 212
Score = 30.0 bits (67), Expect = 3.4
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 21/85 (24%)
Query: 659 GLYFPDTNTKAVMYTDQTGAATVRIAMPVNMQSSLIFHY--NLKLYDGDGDMLDGVSLKR 716
G + P A + + + P+N HY N+K +G G
Sbjct: 116 GDFVPYLRVVAFLQKHGSEKVQKVMFAPMNAGDG--PHYGANVKFEEGLGTYK------- 166
Query: 717 FVMQSVVGNIVSFRVHAPAAAEFLL 741
V F + AP+ E+ L
Sbjct: 167 ----------VRFEIAAPSHDEYSL 181
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 30.0 bits (67), Expect = 3.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 169 KKKKKKKKKKKKKKKKKKSSNK 190
+KK KK+ KKK+ + K S
Sbjct: 253 YEKKPKKEVKKKRWNRPKMSLA 274
Score = 29.6 bits (66), Expect = 5.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 150 IEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKK 184
+E + K A +KK KK+ KKK+ + K
Sbjct: 236 MEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPK 270
Score = 29.6 bits (66), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKS 187
E +KK KK+ KKK+ + K S
Sbjct: 249 ENPVYEKKPKKEVKKKRWNRPKMS 272
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 30.0 bits (67), Expect = 4.1
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 168 KKKKKKKKKKKKKKKKKKKSSNK 190
K KK+ K+ KK + +
Sbjct: 253 MAKSTKKEPATHKRYNLKKLTYE 275
Score = 28.9 bits (64), Expect = 9.6
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKS 187
K KK+ K+ KK +
Sbjct: 252 TMAKSTKKEPATHKRYNLKKLT 273
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 29.7 bits (67), Expect = 4.1
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKK----------KKKKKKKSSN 189
N + + E K K+ +KK K ++KK S+N
Sbjct: 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKNSAN 198
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 29.3 bits (65), Expect = 4.1
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ + KK+ K S +
Sbjct: 21 NNRWAENNYKKRLLGTAFKSSPFGGSSH 48
Score = 28.9 bits (64), Expect = 5.8
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSS 188
+ + + KK+ KSS
Sbjct: 18 HRRNNRWAENNYKKRLLGTAFKSS 41
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory,
pyridoxal phosphate, one-carbon metabolism,
PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus
stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A*
1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A*
2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A*
2vgv_A* 2vgw_A* ...
Length = 405
Score = 30.2 bits (69), Expect = 4.4
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 24/48 (50%)
Query: 370 RYYGGCSIDIEKPAIYVAQEDQHTFTDLVRQLAGRHATSDIEKARTLF 417
RYYGGC + D+V +LA E+A+ LF
Sbjct: 59 RYYGGCE-----------------YVDIVEELA-------RERAKQLF 82
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011,
serine hydroxymethyltransfera salmonella typhimurium.;
HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A*
3g8m_A* 1eqb_A*
Length = 420
Score = 30.2 bits (69), Expect = 4.7
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 24/48 (50%)
Query: 370 RYYGGCSIDIEKPAIYVAQEDQHTFTDLVRQLAGRHATSDIEKARTLF 417
RYYGGC + D+V QLA I++A+ LF
Sbjct: 66 RYYGGCE-----------------YVDVVEQLA-------IDRAKELF 89
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 29.8 bits (66), Expect = 4.8
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 162 TLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFM 199
LEK + + ++K+ K ++ K+S N++ Q+ F+
Sbjct: 134 NLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFV 171
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 27.7 bits (62), Expect = 5.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 166 AKKKKKKKKKKKKKKKKKKK 185
+ K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAK 21
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA)
sandwich, CSGI transferase, structural genomics; HET:
MSE; 1.80A {Campylobacter jejuni}
Length = 417
Score = 29.9 bits (68), Expect = 5.4
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 24/48 (50%)
Query: 370 RYYGGCSIDIEKPAIYVAQEDQHTFTDLVRQLAGRHATSDIEKARTLF 417
RYYGGC F D + LA IE+ + LF
Sbjct: 61 RYYGGCE-----------------FVDEIETLA-------IERCKKLF 84
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural
genomics; HET: PLP; 1.15A {Thermus thermophilus}
Length = 407
Score = 29.8 bits (68), Expect = 5.4
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 24/48 (50%)
Query: 370 RYYGGCSIDIEKPAIYVAQEDQHTFTDLVRQLAGRHATSDIEKARTLF 417
RYYGGC D V LA IE+A+ LF
Sbjct: 59 RYYGGCE-----------------VIDRVESLA-------IERAKALF 82
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon
metabolism, pyridoxal phosphate, structural genomics;
HET: LLP; 1.50A {Mycobacterium tuberculosis}
Length = 447
Score = 29.9 bits (68), Expect = 5.4
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 24/48 (50%)
Query: 370 RYYGGCSIDIEKPAIYVAQEDQHTFTDLVRQLAGRHATSDIEKARTLF 417
RYYGGC D+V LA ++A+ LF
Sbjct: 81 RYYGGCE-----------------HVDVVENLA-------RDRAKALF 104
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A,
one-carbon metabolism, pyridoxa phosphate, structural
genomics; 1.60A {Burkholderia pseudomallei}
Length = 425
Score = 29.9 bits (68), Expect = 5.5
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 24/48 (50%)
Query: 370 RYYGGCSIDIEKPAIYVAQEDQHTFTDLVRQLAGRHATSDIEKARTLF 417
RYYGGC F D V LA IE+ + LF
Sbjct: 68 RYYGGCE-----------------FADEVEALA-------IERVKRLF 91
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 29.7 bits (66), Expect = 6.1
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNK 190
E+ K KK K K+ KK K +
Sbjct: 259 ERVKSTKKNDKPKRDHKKFYPTKLTAA 285
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 29.7 bits (66), Expect = 6.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKS 187
K K K K KK + KKKK K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKK 23
Score = 29.3 bits (65), Expect = 9.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNK 190
K K K KK + KKKK KK+ K
Sbjct: 3 KNKDKDKKVPEPDNKKKKPKKEEEQK 28
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 29.1 bits (65), Expect = 6.3
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 153 LTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
LT+ + V K +++ +KKK +KK KK+K + +
Sbjct: 150 LTEKEQIV---PKPEEEVAQKKKISQKKLKKQKLMARE 184
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 29.2 bits (65), Expect = 6.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNK 190
L+K KK K KK K + ++K S
Sbjct: 113 LKKRDKKNKSKKSKPAQGGEQKLISEED 140
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 28.1 bits (62), Expect = 7.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
K K+K K K KKKK+ +K
Sbjct: 100 VKIVKRKMISKPKTDKKKKRSQK 122
Score = 28.1 bits (62), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 167 KKKKKKKKKKKKKKKKKKKK 186
K+K K K KKKK+ +KK
Sbjct: 104 KRKMISKPKTDKKKKRSQKK 123
>3lzq_A P19 protein; copper binding, iron transport, iron uptake, P19
delition, T protein; 1.41A {Campylobacter jejuni} PDB:
3lzn_A 3lzo_A 3lzp_A 3lzl_A 3lzr_A
Length = 159
Score = 28.5 bits (63), Expect = 7.4
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 15/85 (17%)
Query: 659 GLYFPDTNTKAVMYTDQTGAATVRIAMPVNMQSSLIFHY--NLKLYDGDGDMLDGVSLKR 716
G + P + TGA MP+ HY N+ + + D GV
Sbjct: 60 GFWMPYLTIAYELKNTDTGAIKRGTLMPMVADDG--PHYGANIAM-EKDKKGGFGVGNYE 116
Query: 717 FVMQSVVGNIVSFRVHAPAAAEFLL 741
++F + P F
Sbjct: 117 ----------LTFYISNPEKQGFGR 131
>3nrp_A Periplasmic protein-probably involved in high-AFF transport;
immunoglobulin-like fold, iron transporter, copper
binding; 1.60A {Escherichia coli} PDB: 3nrq_A
Length = 160
Score = 28.4 bits (63), Expect = 7.9
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 22/88 (25%)
Query: 656 FRYGLYFPDTNTKAVMYTDQTGAATVRIAMPVNMQSSLIFHY--NLKLYDGDGDMLDGVS 713
F G + P + + TG MP+ HY N+K+ G G+
Sbjct: 59 FGAGEWIPYLTISYTLVNNDTGEKQEGTFMPMVASDG--PHYGANIKM-MGVGNYK---- 111
Query: 714 LKRFVMQSVVGNIVSFRVHAPAAAEFLL 741
V++ + P+ A
Sbjct: 112 -------------VTYHIEPPSKAGMHR 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 29.1 bits (65), Expect = 8.3
Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKK----KKKSSNKIAPQ 194
N L +++ +++ ++KK + NK +
Sbjct: 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAE 305
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 28.9 bits (65), Expect = 8.7
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 361 LFKRLCSLVRYYG--GCSIDIEKPAIYVAQEDQHTFTDLVRQLA 402
L + LV G G +ID E V+ D+ FT +RQL
Sbjct: 99 LVNNIYDLVSTRGYGGVTIDFE----QVSAADRDLFTGFLRQLR 138
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 29.1 bits (65), Expect = 9.0
Identities = 5/32 (15%), Positives = 20/32 (62%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQ 194
+ +AK++ + +KKK++++++ + + +
Sbjct: 388 VSEAKQENENMRKKKEEEERRARMEAQLKEQR 419
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 28.0 bits (62), Expect = 9.5
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 165 KAKKKKKKK---KKKKKKKKKKKKKSSNKIAPQLVIFMN 200
K K+K K+ K K +KK + + + +
Sbjct: 106 KELKRKIKRTSGKAITKLLSEKKGDTWASVQSKKSDHLK 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,876,104
Number of extensions: 1114995
Number of successful extensions: 5284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4761
Number of HSP's successfully gapped: 222
Length of query: 1140
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1036
Effective length of database: 3,798,009
Effective search space: 3934737324
Effective search space used: 3934737324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.5 bits)