RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2861
(1140 letters)
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 29.4 bits (66), Expect = 0.62
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
L++ + + K+ +K++
Sbjct: 78 LKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.3 bits (58), Expect = 9.1
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 162 TLEKAKKKKKKKKKKKKKKK 181
E + K+ +K++
Sbjct: 82 VPEGYEMKRVGDYYVFEKRE 101
>d1g91a_ d.9.1.1 (A:) Myeloid progenitor inhibitory factor-1
(MPIF-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 28.6 bits (64), Expect = 0.87
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKS 187
TK C K+ + + K + K +K+
Sbjct: 44 TKKGRRFCANPSDKQVQVCMRMLKLDTRIKTRKN 77
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 28.7 bits (64), Expect = 1.0
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSS 188
+ ++ KK+ +KKK K+ S
Sbjct: 1 MVTPREPKKRTTRKKKDPNAPKRALS 26
Score = 28.3 bits (63), Expect = 1.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 167 KKKKKKKKKKKKKKKKKKKKSS 188
+ KK+ +KKK K+ S+
Sbjct: 6 EPKKRTTRKKKDPNAPKRALSA 27
Score = 28.3 bits (63), Expect = 1.6
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 168 KKKKKKKKKKKKKKKKKKKSSN 189
++ KK+ +KKK K++ +
Sbjct: 5 REPKKRTTRKKKDPNAPKRALS 26
Score = 27.2 bits (60), Expect = 4.0
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 172 KKKKKKKKKKKKKKKSSNKIAPQLVIFM 199
++ KK+ +KKK N L +M
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYM 29
Score = 26.4 bits (58), Expect = 6.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 162 TLEKAKKKKKKKKKKKKKKKK 182
T + KK+ +KKK K+
Sbjct: 3 TPREPKKRTTRKKKDPNAPKR 23
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 30.5 bits (68), Expect = 1.2
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 166 AKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFM 199
A ++ K K+K+ +K S I+ Q I +
Sbjct: 51 AAREIKSLASKRKEDLQKITFLSRDISQQFGINL 84
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 29.3 bits (66), Expect = 1.2
Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 148 GLIEGLTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMN 200
G I + + +A++++KK+ +K +K + + +
Sbjct: 47 GAI---QAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWES 96
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 28.2 bits (63), Expect = 1.5
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
K+ + K +K K K + +NK A
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEANKKA 43
Score = 27.9 bits (62), Expect = 1.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKS 187
A+K + K +K K K S
Sbjct: 13 NAQKSAMARAKNLEKAKAAGKGS 35
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 28.2 bits (63), Expect = 1.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKK 185
K + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
Score = 27.4 bits (61), Expect = 3.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 153 LTKNAETVCTLEKAKKKKKKKKKKKKK 179
+ + A + + + K+++KK KKKKKK
Sbjct: 78 MIELARKIAEIREQKREQKKDKKKKKK 104
Score = 27.0 bits (60), Expect = 4.8
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 162 TLEKAKKKKKKKKKKKKKKKK 182
+ + +++K+++KK KKKKKK
Sbjct: 84 KIAEIREQKREQKKDKKKKKK 104
Score = 27.0 bits (60), Expect = 4.9
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 168 KKKKKKKKKKKKKKKKKKK 186
+ +++K+++KK KKKKKK
Sbjct: 86 AEIREQKREQKKDKKKKKK 104
>d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 27.7 bits (62), Expect = 2.1
Identities = 5/32 (15%), Positives = 18/32 (56%)
Query: 183 KKKKSSNKIAPQLVIFMNIGTTSVVGNIVSFR 214
K+ + I + + +++G+++ +G + S +
Sbjct: 23 KEMLKVDPIRAKETLMLSVGSSTTLGIVTSVK 54
>d1eiga_ d.9.1.1 (A:) Eotaxin-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 27.5 bits (61), Expect = 2.2
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
TK + C K + ++ K K+KK +
Sbjct: 41 TKKGQQSCGDPKQEWVQRYMKNLDAKQKKASPR 73
>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 90
Score = 27.7 bits (62), Expect = 2.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 183 KKKKSSNKIAPQLVIFMNIGTTSVVGNIVSFR 214
K++ + V+ +NIGT + G I S R
Sbjct: 19 KEELKIEPLRTGEVLMLNIGTATTAGVITSAR 50
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 29.6 bits (66), Expect = 2.6
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 659 GLYFPDTNTKAVMYTDQTGAATVRIAMPVNMQSSLIFHYNLKLYDGDGDMLD 710
L T V + TG ++ + + YD DG ++
Sbjct: 181 WLGIFTDPTLGVFASAYTGQVEKNTSIFIKNE--------FTFYDEDGKPIN 224
>d1j8ia_ d.9.1.1 (A:) Lymphotactin {Human (Homo sapiens) [TaxId:
9606]}
Length = 93
Score = 27.5 bits (61), Expect = 3.0
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 154 TKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKKSSNKIA 192
TK VC +A + + +K + K
Sbjct: 41 TKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPT 79
>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit
{Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 89
Score = 27.3 bits (61), Expect = 3.2
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 183 KKKKSSNKIAPQLVIFMNIGTTSVVGNIVSFR 214
+++ I + V+ +N+GT +G +
Sbjct: 18 EQELKVEPIKRKEVLLLNVGTARTMGLVTGLG 49
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.8 bits (64), Expect = 4.2
Identities = 7/36 (19%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 157 AETVCTLEKAKKKKKKKKKKKKKKKKKK--KKSSNK 190
+A K+ +K+++ ++K ++ K K+ + K
Sbjct: 294 HNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEK 329
Score = 28.4 bits (63), Expect = 5.2
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKK 186
+K ++ ++K ++ K K+K +K+
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEKE 330
Score = 28.0 bits (62), Expect = 6.1
Identities = 5/29 (17%), Positives = 19/29 (65%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
+++ +K+++ ++K ++ K K+K ++
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAEKERL 332
>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 239
Score = 28.6 bits (64), Expect = 4.2
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 365 LCSLVRYYGGCSIDI--EKPAIYVAQEDQHTFTDLVRQLAGRHATSDIEKART 415
C++ G ++ +A+E V + G A I A T
Sbjct: 186 ECAMENAVGMAAMVKADRLQMQVIARELSARLQTEVV-VGGVEANMAIAGALT 237
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 26.7 bits (59), Expect = 4.3
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 147 LGLIEGLTKNAETVCTLEKAKKKK----------KKKKKKKKKKKKKKKK 186
LG E E A+K++ + KKKK+K++K
Sbjct: 37 LGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 27.3 bits (60), Expect = 5.0
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSNKI 191
E+ + K KKK K+
Sbjct: 88 EQITQHIADLSSKAAGTPKKKAVVQAKL 115
Score = 26.9 bits (59), Expect = 6.5
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 163 LEKAKKKKKKKKKKKKKKKKK 183
+ K KKK + K
Sbjct: 94 IADLSSKAAGTPKKKAVVQAK 114
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 27.2 bits (60), Expect = 5.0
Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 170 KKKKKKKKKKKKKKKKKSSNKIAPQLVIF 198
KK + ++ + ++K + +LV+
Sbjct: 1 KKSARIRRATRARRKLQELGA--TRLVVH 27
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.1 bits (63), Expect = 5.1
Identities = 6/22 (27%), Positives = 16/22 (72%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKK 185
+K +KK+ ++KK+ + +++K
Sbjct: 104 QKEQKKQLTSQEKKQIRLEREK 125
Score = 27.4 bits (61), Expect = 9.2
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
+ K++KK+ ++KK+ + +++
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLERE 124
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.6 bits (63), Expect = 5.1
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 8 KDEQTRLEMKHRQEEDDLYRIFARQREEEDNRIKQEFRHR 47
K ++E Q + R A + +E++ +K+ F+
Sbjct: 246 KQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE 285
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 26.6 bits (59), Expect = 5.2
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 153 LTKNAETVCTLEKAKKKKKKKKKKKKKKKKK 183
+ K A ++K ++ + K+K K +
Sbjct: 63 IQKGASDE-EVKKKLEESNLTEYMKEKIKIR 92
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.1 bits (63), Expect = 5.3
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 165 KAKKKKKKKKKKKKKKKKKKKKSSNKIAPQLVIFMNIGTTSVVGNIVSFRVHAP 218
KA+ + +K+ K++K K K++ M+ + N F++ P
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLL-KEYGFCIMD-NHKERIAN---FKIEPP 158
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 26.7 bits (59), Expect = 5.8
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 162 TLEKAKKKKKKKK--KKKKKKKKKKKKSS 188
E+ K K KKK + KK+K+ S
Sbjct: 64 DFEQPKGPAGAVKLAKKKSPEVKKEKEVS 92
>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 113
Score = 27.1 bits (59), Expect = 5.9
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 994 LNSYMHRINPSIEDKCNQCSQSPHDTPHLFNCPGRPTTLTVID 1036
+N + S C +T F G+ T LTV++
Sbjct: 74 MNVSTLELGDSALYLCASSLADRVNTEAFF---GQGTRLTVVE 113
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 27.8 bits (61), Expect = 6.1
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKK 185
L K K++ + + + + +K+
Sbjct: 159 LPKPKREAFLEANRAELVRFQKE 181
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 344
Score = 28.3 bits (61), Expect = 6.1
Identities = 7/70 (10%), Positives = 12/70 (17%)
Query: 985 WDMIKEVWRLNSYMHRINPSIEDKCNQCSQSPHDTPHLFNCPGRPTTLTVIDLWQNPIAT 1044
+ + + S L + L N I
Sbjct: 228 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 287
Query: 1045 AEFLELPTAL 1054
L T +
Sbjct: 288 DAVRTLKTVI 297
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
coli [TaxId: 562]}
Length = 103
Score = 26.7 bits (59), Expect = 6.2
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 153 LTKNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
+ + +K K K +++K +K+
Sbjct: 53 FVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQ 86
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 26.3 bits (58), Expect = 6.5
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 167 KKKKKKKKKKKKKKKKKK 184
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.3 bits (58), Expect = 6.5
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 168 KKKKKKKKKKKKKKKKKK 185
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 26.3 bits (58), Expect = 6.5
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 169 KKKKKKKKKKKKKKKKKK 186
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 26.7 bits (59), Expect = 6.7
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 155 KNAETVCTLEKAKKKKKKKKKKKKKKKKKKKK 186
+ A V + + KK K K K + ++K
Sbjct: 53 EGASVVAEVLGHGRGKKILVSKFKAKVQYRRK 84
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 138
Score = 26.9 bits (59), Expect = 7.7
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 144 GNTLGLIEGLTKNAETVCTLEKAKKKKKKKKKKKKK 179
G+ ++E + + +K +KK + + K K
Sbjct: 1 GDIESILE----KVKGLEEYDKIQKKMEDVMEGKGK 32
Score = 26.9 bits (59), Expect = 8.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 163 LEKAKKKKKKKKKKKKKKKKKKKK 186
LEK K ++ K +KK + + K
Sbjct: 7 LEKVKGLEEYDKIQKKMEDVMEGK 30
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 27.3 bits (60), Expect = 8.1
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 164 EKAKKKKKKKKKKKKKKKKKKKKSSN 189
E+A ++ + + KK
Sbjct: 63 EEAYAAAVEEYEANPPAVARGKKPLK 88
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 27.7 bits (61), Expect = 8.4
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 168 KKKKKKKKKKKKKKKKKKKSSNKI 191
K+ + +K K+ + KI
Sbjct: 227 HTLSKEYETQKVPKENAENYLIKI 250
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 127
Score = 26.7 bits (59), Expect = 9.4
Identities = 7/28 (25%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 170 KKKKKKKKKKKKKKKKKSSNK---IAPQ 194
+ KK++K++ K +K + K ++P+
Sbjct: 2 RNKKQRKQQVKLRKPGFAVAKYVRMSPR 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,437,448
Number of extensions: 220994
Number of successful extensions: 1213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1064
Number of HSP's successfully gapped: 67
Length of query: 1140
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1045
Effective length of database: 1,103,246
Effective search space: 1152892070
Effective search space used: 1152892070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)