BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2864
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 46 QDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
Q+P+DP FP QWYL Q DLNV+ AWAQG
Sbjct: 4 QEPTDPKFPQQWYLSGVTQR------DLNVKEAWAQG 34
>pdb|3MR7|A Chain A, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|B Chain B, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|C Chain C, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
Length = 189
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 4 VEQSRRNYVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDP 48
V Q ++ V + G ++VK +P++V VPD +S DP
Sbjct: 138 VHQITQDRVSEPFTDLGLQKVKNITRPIRVWQWVPDADRDQSHDP 182
>pdb|1FMM|S Chain S, Solution Structure Of Nfgf-1
Length = 132
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 36 LVPDIVMKESQDPSDPYFPFQWYLKNTGQ 64
+ PD + ++D SDPY Q+Y ++ G+
Sbjct: 17 IFPDGKVDGTRDRSDPYIQLQFYAESVGE 45
>pdb|2J6L|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|B Chain B, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|C Chain C, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|D Chain D, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|E Chain E, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|F Chain F, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|G Chain G, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|H Chain H, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
Length = 500
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 7 SRRNYVHQAVQQSGFKRVKRGYKPLKVEN 35
+RR ++H+++ R+K+ Y ++V N
Sbjct: 306 ARRLFIHESIHDEVVNRLKKAYAQIRVGN 334
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 49 SDPYFPFQWYLKNTGQNGGKAK 70
++P QWYL N+GQ+G A+
Sbjct: 28 ANPLQDQQWYLLNSGQDGFSAR 49
>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
Length = 481
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 42 MKESQDP---SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAW 79
+KE++D +DP F QW+L N G D+NV W
Sbjct: 4 VKEAEDKLSINDPLFERQWHLVNPSFPGS----DINVLDLW 40
>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
Length = 503
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 42 MKESQDP---SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAW 79
+KE++D +DP F QW+L N G D+NV W
Sbjct: 11 VKEAEDKLSINDPLFERQWHLVNPSFPGS----DINVLDLW 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,930,087
Number of Sequences: 62578
Number of extensions: 109289
Number of successful extensions: 147
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 9
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)