Query psy2864
Match_columns 85
No_of_seqs 113 out of 496
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 18:51:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3526|consensus 99.8 5.2E-20 1.1E-24 142.7 2.8 73 3-85 88-160 (629)
2 cd04059 Peptidases_S8_Protein_ 98.9 1.4E-09 3E-14 78.7 3.4 38 48-85 1-38 (297)
3 KOG3525|consensus 97.2 0.00015 3.3E-09 56.9 1.0 32 50-85 1-32 (431)
4 cd07484 Peptidases_S8_Thermita 82.7 0.7 1.5E-05 32.7 1.3 17 47-63 1-17 (260)
5 PTZ00262 subtilisin-like prote 69.0 4 8.6E-05 34.1 2.3 17 45-61 284-300 (639)
6 PF15536 Toxin_58: Putative to 42.0 11 0.00023 25.3 0.5 19 46-64 53-71 (131)
7 PF08195 TRI9: TRI9 protein; 33.1 13 0.00028 20.3 -0.2 12 5-16 10-21 (43)
8 TIGR03757 conj_TIGR03757 integ 28.0 26 0.00057 23.1 0.6 11 74-84 73-83 (113)
9 KOG1006|consensus 20.3 60 0.0013 25.3 1.3 14 70-84 245-258 (361)
10 COG4667 Predicted esterase of 20.2 1.1E+02 0.0023 23.5 2.6 34 51-84 153-186 (292)
No 1
>KOG3526|consensus
Probab=99.78 E-value=5.2e-20 Score=142.69 Aligned_cols=73 Identities=49% Similarity=0.793 Sum_probs=65.8
Q ss_pred cccccCCCCccEEeecccccccCCCCCCCcccCCCccccccCCCCCCCCCCCccceeecCCCCCCCCCCCCCcHHHHhcC
Q psy2864 3 KVEQSRRNYVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQG 82 (85)
Q Consensus 3 ~~~L~~~~~V~w~eQQ~~~~R~KR~~~~~~~~~~~~~~~~~~~~~~~DPl~~~QWyL~n~gq~~~~~g~DlNV~~aW~~G 82 (85)
+..|.+||.|+-++||....|.||+|.++... + +..+||+|..||||.|+||++|.+++||||.+||.+|
T Consensus 88 ~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~f------d----~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g 157 (629)
T KOG3526|consen 88 HAKLHNDPEVKMALQQEGFDRKKRGYRPINEF------D----INMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALG 157 (629)
T ss_pred hhhhccChhHhhhhhccccchhhccCCchhhh------c----cccCCcccceeeeeecccccCCcccccccHHHHHhhc
Confidence 45799999999999999999999999875422 2 2568999999999999999999999999999999999
Q ss_pred CCC
Q psy2864 83 GNC 85 (85)
Q Consensus 83 ~TG 85 (85)
|||
T Consensus 158 ~tg 160 (629)
T KOG3526|consen 158 YTG 160 (629)
T ss_pred ccC
Confidence 998
No 2
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=98.88 E-value=1.4e-09 Score=78.70 Aligned_cols=38 Identities=66% Similarity=1.228 Sum_probs=36.4
Q ss_pred CCCCCCCccceeecCCCCCCCCCCCCCcHHHHhcCCCC
Q psy2864 48 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGGNC 85 (85)
Q Consensus 48 ~~DPl~~~QWyL~n~gq~~~~~g~DlNV~~aW~~G~TG 85 (85)
||||++++||||++.++.++.++.||||.+||++|+||
T Consensus 1 ~~dp~~~~qw~l~~~~~~~~~~~~~~~~~~~w~~g~~G 38 (297)
T cd04059 1 PNDPLFPYQWYLKNTGQAGGTPGLDLNVTPAWEQGITG 38 (297)
T ss_pred CCCcccccccccccCCCCCCCCCCCcccHHHHhCCCCC
Confidence 69999999999999999888899999999999999998
No 3
>KOG3525|consensus
Probab=97.15 E-value=0.00015 Score=56.89 Aligned_cols=32 Identities=38% Similarity=0.647 Sum_probs=28.7
Q ss_pred CCCCCccceeecCCCCCCCCCCCCCcHHHHhcCCCC
Q psy2864 50 DPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGGNC 85 (85)
Q Consensus 50 DPl~~~QWyL~n~gq~~~~~g~DlNV~~aW~~G~TG 85 (85)
||+|..||||++.+ .++.||||..+|..||||
T Consensus 1 ~~~~~~~w~l~~~~----~~~~d~~v~~~~~~~~~g 32 (431)
T KOG3525|consen 1 DPMSIHMWYLNAQE----FPGSDLNVQNAWCKGYTG 32 (431)
T ss_pred CCCccceEEecCCc----cccccceeeeccccCCCC
Confidence 79999999998766 456899999999999997
No 4
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=82.71 E-value=0.7 Score=32.71 Aligned_cols=17 Identities=47% Similarity=1.290 Sum_probs=14.6
Q ss_pred CCCCCCCCccceeecCC
Q psy2864 47 DPSDPYFPFQWYLKNTG 63 (85)
Q Consensus 47 ~~~DPl~~~QWyL~n~g 63 (85)
.|+||+|++||||...+
T Consensus 1 ~~~~~~~~~~w~~~~~~ 17 (260)
T cd07484 1 TPNDPYYSYQWNLDQIG 17 (260)
T ss_pred CCCCcCcccCCCccccC
Confidence 37999999999998764
No 5
>PTZ00262 subtilisin-like protease; Provisional
Probab=68.97 E-value=4 Score=34.10 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=14.7
Q ss_pred CCCCCCCCCCccceeec
Q psy2864 45 SQDPSDPYFPFQWYLKN 61 (85)
Q Consensus 45 ~~~~~DPl~~~QWyL~n 61 (85)
...+|||.+..||+|..
T Consensus 284 ~~~~ND~~~~~qWgLd~ 300 (639)
T PTZ00262 284 KYQFNDEGRNLQWGLDL 300 (639)
T ss_pred ccccCCCCcccCcCcch
Confidence 35799999999999876
No 6
>PF15536 Toxin_58: Putative toxin 58
Probab=42.03 E-value=11 Score=25.28 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=14.5
Q ss_pred CCCCCCCCCccceeecCCC
Q psy2864 46 QDPSDPYFPFQWYLKNTGQ 64 (85)
Q Consensus 46 ~~~~DPl~~~QWyL~n~gq 64 (85)
+...-.-|.+|||+.|+-.
T Consensus 53 lha~~~~y~YQWY~l~Dp~ 71 (131)
T PF15536_consen 53 LHASSSPYRYQWYFLNDPH 71 (131)
T ss_pred ccccCCCccEEEEEecCcc
Confidence 4556677999999999754
No 7
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=33.11 E-value=13 Score=20.30 Aligned_cols=12 Identities=8% Similarity=-0.255 Sum_probs=9.6
Q ss_pred cccCCCCccEEe
Q psy2864 5 EQSRRNYVHQAV 16 (85)
Q Consensus 5 ~L~~~~~V~w~e 16 (85)
.+..||.|.|+|
T Consensus 10 ~~~~dp~vswle 21 (43)
T PF08195_consen 10 SYDMDPDVSWLE 21 (43)
T ss_pred cccCCCCccHHH
Confidence 467889999986
No 8
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=27.97 E-value=26 Score=23.10 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=9.5
Q ss_pred CcHHHHhcCCC
Q psy2864 74 NVEAAWAQGGN 84 (85)
Q Consensus 74 NV~~aW~~G~T 84 (85)
+|..||.+|+|
T Consensus 73 gv~~Aw~lGi~ 83 (113)
T TIGR03757 73 GVADAWQLGVT 83 (113)
T ss_pred HHHHHHHcCCc
Confidence 57899999987
No 9
>KOG1006|consensus
Probab=20.29 E-value=60 Score=25.28 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=11.6
Q ss_pred CCCCCcHHHHhcCCC
Q psy2864 70 KLDLNVEAAWAQGGN 84 (85)
Q Consensus 70 g~DlNV~~aW~~G~T 84 (85)
|.|+. ..||.+|||
T Consensus 245 gyDiR-SDvWSLGIT 258 (361)
T KOG1006|consen 245 GYDIR-SDVWSLGIT 258 (361)
T ss_pred Ccchh-hhhhhhcce
Confidence 67775 689999998
No 10
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=20.20 E-value=1.1e+02 Score=23.48 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=26.6
Q ss_pred CCCCccceeecCCCCCCCCCCCCCcHHHHhcCCC
Q psy2864 51 PYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGGN 84 (85)
Q Consensus 51 Pl~~~QWyL~n~gq~~~~~g~DlNV~~aW~~G~T 84 (85)
|+|++.-+|++..-..|...-.|=|.+||++|++
T Consensus 153 Pf~~~~V~i~G~~YlDGGIsdsIPvq~a~~~G~~ 186 (292)
T COG4667 153 PFYSEGVEINGKNYLDGGISDSIPVKEAIRLGAD 186 (292)
T ss_pred CCCCCCeEECCEecccCcccccccchHHHHcCCc
Confidence 7999999998865444444556999999999985
Done!