RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2864
(85 letters)
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase,
SUBT like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1
PDB: 1r64_A* 1ot5_A*
Length = 503
Score = 60.1 bits (145), Expect = 2e-12
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 33 VENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
+L+P ++ +DP F QW+L N G D+NV W
Sbjct: 5 DSSLLPVKEAEDKLSINDPLFERQWHLVNPSFPG----SDINVLDLWYNN 50
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 57.6 bits (138), Expect = 1e-11
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 43 KESQDPSDPYFPFQWYLKNTGQNG-----GKAKLDLNVEAAWAQG 82
+ ++P QWYL N+GQ+G G A DLN+ A G
Sbjct: 22 ERCLPGANPLQDQQWYLLNSGQDGFSARGGIAGNDLNLWWAHRTG 66
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain;
HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus
musculus} SCOP: b.18.1.20 c.41.1.1
Length = 471
Score = 55.1 bits (132), Expect = 9e-11
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 47 DPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
+P+DP FP QWYL Q DLNV+ AWAQG
Sbjct: 5 EPTDPKFPQQWYLSGVTQR------DLNVKEAWAQG 34
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A
3ti7_A
Length = 340
Score = 38.9 bits (91), Expect = 4e-05
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 8/35 (22%)
Query: 48 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
P+D ++ QW+ + + + W G
Sbjct: 2 PNDQHYREQWHYFDRY--------GVKADKVWDMG 28
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 32.9 bits (75), Expect = 0.006
Identities = 5/50 (10%), Positives = 12/50 (24%), Gaps = 10/50 (20%)
Query: 33 VENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
+ + ++ F QW + N A++
Sbjct: 103 TCSTCITSEKTIDRTSNESLFSRQWDMNKITNN----------GASYDDL 142
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 28.5 bits (64), Expect = 0.21
Identities = 2/36 (5%), Positives = 5/36 (13%), Gaps = 11/36 (30%)
Query: 48 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGG 83
+ WY + +
Sbjct: 16 SASARAEKPWYFDA-----------IGLTETTMSLT 40
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 27.3 bits (60), Expect = 0.62
Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 16/80 (20%)
Query: 2 PKVEQSRRNYVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKN 61
+ +Y + ++ + K YK + ++D + W L+
Sbjct: 87 KGIRYVEPSYKRELIKPTVVKPNPDMYKI------RKPGLNSTARDYGEELSNELWGLEA 140
Query: 62 TGQNGGKAKLDLNVEAAWAQ 81
G + W +
Sbjct: 141 IGVT----------QQLWEE 150
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone,
nucleoprotein, RNA replication; 2.10A {Mokola virus}
Length = 303
Score = 27.2 bits (60), Expect = 0.69
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 39 DIVMKESQDPSDPYFPFQWYLKNTG 63
D + E QDP PFQ +L G
Sbjct: 80 DNYLSEGQDP---LIPFQNFLDEIG 101
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta,
hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Length = 90
Score = 26.4 bits (58), Expect = 0.70
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 12 VHQAVQQSGFKRVKR 26
V A QQ +R KR
Sbjct: 76 VTWAEQQYEKERSKR 90
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP:
c.41.1.1
Length = 280
Score = 26.8 bits (60), Expect = 0.91
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 12/36 (33%)
Query: 48 PSDPYFP-FQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
P+D Y+ +Q+ +NT + AW
Sbjct: 3 PNDTYYQGYQYGPQNT-----------YTDYAWDVT 27
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 25.8 bits (57), Expect = 1.8
Identities = 3/34 (8%), Positives = 9/34 (26%), Gaps = 11/34 (32%)
Query: 49 SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
+ P W ++ + + W+
Sbjct: 2 TQPAQTIPWGIER-----------VKAPSVWSIT 24
>3oa1_A Phosphoprotein; seattle structural genomics center for infectious
disease, R virus, protein degredation; 2.20A {Rabies
virus strain pasteur vaccin}
Length = 229
Score = 25.7 bits (56), Expect = 1.8
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 39 DIVMKESQDPSDPYFPFQWYLKNTG 63
D M E +DP FQ YL N G
Sbjct: 12 DFQMDEGEDP---SLLFQSYLDNVG 33
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase;
1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A
2zwo_A
Length = 395
Score = 25.1 bits (55), Expect = 3.6
Identities = 6/57 (10%), Positives = 13/57 (22%), Gaps = 18/57 (31%)
Query: 33 VENLVPDIVMK-------ESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
VE + D + P W ++ + + W+
Sbjct: 54 VEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIER-----------VKAPSVWSIT 99
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics,
joint center for structural genomics; HET: MSE; 1.44A
{Caulobacter crescentus CB15}
Length = 312
Score = 24.5 bits (54), Expect = 4.3
Identities = 11/46 (23%), Positives = 12/46 (26%), Gaps = 16/46 (34%)
Query: 26 RGYKPLKVENL----VPDIVMKES------QDPSDP----YFPFQW 57
RGY P VE D +KE P W
Sbjct: 77 RGYIPFGVETAKGADHYD--LKEFWHMGRDLPPGHRFRAHMADNVW 120
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 24.4 bits (54), Expect = 5.6
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 12/36 (33%)
Query: 48 PSDPYFP-FQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
P+DPYF Q+ + + AW
Sbjct: 3 PNDPYFSSRQYGPQK-----------IQAPQAWDIA 27
>2wuj_A Septum site-determining protein diviva; bacterial cell division,
septation, cell cycle, sporulation; 1.40A {Bacillus
subtilis} PDB: 2wuk_A
Length = 57
Score = 22.7 bits (49), Expect = 8.6
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 16 VQQSGFKRVKRGYKPLKVENLVPDIVMKE 44
+ F + RGY +V + V K+
Sbjct: 8 IHNKTFTKSFRGYDEDEVNEFL-AQVRKD 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.412
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,266,149
Number of extensions: 58338
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 16
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.7 bits)