RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2864
         (85 letters)



>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 339

 Score = 48.6 bits (114), Expect = 6e-09
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 37 VPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
          +P    ++    +DP F  QW+L N    G     D+NV   W   
Sbjct: 1  LPVKEAEDKLSINDPLFERQWHLVNPSFPG----SDINVLDLWYNN 42


>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 334

 Score = 45.9 bits (107), Expect = 5e-08
 Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 6/37 (16%)

Query: 46 QDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
          Q+P+DP FP QWYL    Q       DLNV+ AWAQG
Sbjct: 3  QEPTDPKFPQQWYLSGVTQR------DLNVKEAWAQG 33


>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp.,
          AK.1 [TaxId: 1409]}
          Length = 280

 Score = 29.5 bits (65), Expect = 0.030
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 12/36 (33%)

Query: 48 PSDPYFP-FQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
          P+D Y+  +Q+  +NT             + AW   
Sbjct: 3  PNDTYYQGYQYGPQNT-----------YTDYAWDVT 27


>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris
          [TaxId: 2026]}
          Length = 279

 Score = 28.5 bits (62), Expect = 0.077
 Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 10/35 (28%)

Query: 48 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQG 82
          P+DPYF  + Y              +    AW   
Sbjct: 3  PNDPYFSSRQYGPQ----------KIQAPQAWDIA 27


>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans
           [TaxId: 93466]}
          Length = 671

 Score = 26.5 bits (57), Expect = 0.44
 Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 16/82 (19%)

Query: 1   MPKVEQSRRNYVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLK 60
           +  +     +Y  + ++ +  K     YK  K        +   ++D  +      W L+
Sbjct: 86  LKGIRYVEPSYKRELIKPTVVKPNPDMYKIRK------PGLNSTARDYGEELSNELWGLE 139

Query: 61  NTGQNGGKAKLDLNVEAAWAQG 82
             G            +  W + 
Sbjct: 140 AIGVT----------QQLWEEA 151


>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 23.4 bits (49), Expect = 5.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 54  PFQWYLKN 61
           PF WYL+N
Sbjct: 316 PFSWYLEN 323


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0380    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,347
Number of extensions: 11943
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 6
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.8 bits)