RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2865
(395 letters)
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 413 bits (1064), Expect = e-144
Identities = 176/243 (72%), Positives = 196/243 (80%), Gaps = 14/243 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KICDFGLARVEEPD +K MTQEVVTQYYRAPEILMG+RHY++AVD+WSVGCIFAELLGRR
Sbjct: 143 KICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRR 202
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
ILFQAQSP+QQL LITDLLGTP+ E MR AC+GA+ H+LR K SL LY+LSSQAT
Sbjct: 203 ILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATH 262
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHSCMCKCCYTTPSPTSPPTLSIPG 303
EAVHLL +ML FDP KRIS AL HPYLDEGRLR+H+CMCKCCYTT
Sbjct: 263 EAVHLLCRMLVFDPDKRISAADALAHPYLDEGRLRYHTCMCKCCYTTS------------ 310
Query: 304 GGGGRQYTVDFEPSAPQPFDDTWERKLTSVQQVKEEMHKFIAEQLNTSRVPLCINPQSAA 363
GGR YT DFEPSA PFDD +E+ LTSV+QVKEE+H+FI EQ +RVPLCINPQSAA
Sbjct: 311 --GGRVYTSDFEPSANPPFDDEYEKNLTSVRQVKEELHQFILEQQQGNRVPLCINPQSAA 368
Query: 364 FKS 366
FKS
Sbjct: 369 FKS 371
Score = 71.3 bits (175), Expect = 1e-13
Identities = 26/30 (86%), Positives = 28/30 (93%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ LKYLHSA ILHRDIKPGNLLVNSNC+LK
Sbjct: 114 RGLKYLHSAGILHRDIKPGNLLVNSNCVLK 143
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase (MAPK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MAPK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs serve as important
mediators of cellular responses to extracellular
signals. They control critical cellular functions
including differentiation, proliferation, migration, and
apoptosis. They are also implicated in the pathogenesis
of many diseases including multiple types of cancer,
stroke, diabetes, and chronic inflammation. Typical MAPK
pathways involve a triple kinase core cascade comprising
of the MAPK, which is phosphorylated and activated by a
MAPK kinase (MAP2K or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAP3K or MKKK). Each cascade is activated either by a
small GTP-binding protein or by an adaptor protein,
which transmits the signal either directly to a MAP3K to
start the triple kinase core cascade or indirectly
through a mediator kinase, a MAP4K. There are three main
typical MAPK subfamilies: Extracellular signal-Regulated
Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38.
Some MAPKs are atypical in that they are not regulated
by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 208 bits (531), Expect = 3e-64
Identities = 71/169 (42%), Positives = 108/169 (63%), Gaps = 7/169 (4%)
Query: 124 KICDFGLARVEEPDPNK--AMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLG 181
KICDFGLAR +PD ++ +T+ VVT++YRAPE+L+ + Y+ A+D+WSVGCIFAELL
Sbjct: 143 KICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLT 202
Query: 182 RRILFQAQSPVQQLGLITDLLGTPTPEEMRH-ACDGAKCHML-RQTRKSQSLSSLYSLSS 239
R+ LF + + QL LI ++LGTP+ E+++ + A+ ++ + + LS L+ +S
Sbjct: 203 RKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGAS 262
Query: 240 QATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHSCMCKCCY 288
EA+ LL +ML FDP KRI+ + AL HPYL + + K +
Sbjct: 263 P---EAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDPEDEPVAKPPF 308
Score = 66.4 bits (163), Expect = 3e-12
Identities = 21/28 (75%), Positives = 25/28 (89%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
LKYLHSA ++HRD+KP N+LVNSNC LK
Sbjct: 116 LKYLHSANVIHRDLKPSNILVNSNCDLK 143
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 163 bits (415), Expect = 1e-47
Identities = 64/149 (42%), Positives = 82/149 (55%), Gaps = 4/149 (2%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR P + T EVVT +YRAPEIL+G++HYS AVD+WSVGCIFAE++ +
Sbjct: 138 KLADFGLARAFGI-PLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGK 196
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
LF S + QL I +LGTPT E + L +
Sbjct: 197 PLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDP--- 253
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYL 272
E + LL +ML ++P KRIS AL HPY
Sbjct: 254 EGIDLLSKMLQYNPAKRISAKEALKHPYF 282
Score = 57.5 bits (140), Expect = 2e-09
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
L Y HS RILHRD+KP N+L+N + +LK
Sbjct: 111 LAYCHSHRILHRDLKPQNILINRDGVLK 138
>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TEY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TEY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TEY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. There are two subtypes
of plant MAPKs based on the conserved phosphorylation
motif present in the activation loop, TEY and TDY. This
subfamily represents the TEY subtype and is further
subdivided into three groups (A, B, and C). Group A is
represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4
(NtNTF4), among others. They are mostly involved in
environmental and hormonal responses. AtMPK3 and AtMPK6
are also key regulators for stomatal development and
patterning. Group B is represented by AtMPK4, AtMPK13,
and NtNTF6, among others. They may be involved in both
cell division and environmental stress response. AtMPK4
also participates in regulating innate immunity. Group C
is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa
MAPK4 (OsMAPK4), among others. They may also be involved
in stress responses. AtMPK1 and AtMPK2 are activated
following mechanical injury and in the presence of
stress chemicals such as jasmonic acid, hydrogen
peroxide and abscisic acid. OsMAPK4 is also called
OsMSRMK3 for Multiple Stress-Responsive MAPK3.
Length = 337
Score = 162 bits (413), Expect = 7e-47
Identities = 83/222 (37%), Positives = 117/222 (52%), Gaps = 42/222 (18%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KICDFGLAR + MT+ VVT++YRAPE+L+ Y+ A+DVWSVGCIFAELLGR+
Sbjct: 148 KICDFGLARTTS-EKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRK 206
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRH-ACDGAKCHM--LRQTRKSQSLSSLYSLSSQ 240
LF + V QL LIT+LLG+P+ E++ + A+ ++ L T + QS + L+
Sbjct: 207 PLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPR-QSFARLF---PH 262
Query: 241 ATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHSCMCKCCYTTPSPTSPPTLS 300
A A+ LL +ML FDP+KRI+V AL HPYL + P+
Sbjct: 263 ANPLAIDLLEKMLVFDPSKRITVEEALAHPYL-------------------ASLHDPSD- 302
Query: 301 IPGGGGGRQYTVDFEPSAPQPFDDTWERKLTSVQQVKEEMHK 342
EP PF +E + + +KE ++
Sbjct: 303 --------------EPVCQTPFSFDFEEDALTEEDIKELIYN 330
Score = 62.0 bits (151), Expect = 1e-10
Identities = 20/28 (71%), Positives = 25/28 (89%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
LKY+HSA +LHRD+KP NLL+N+NC LK
Sbjct: 121 LKYIHSANVLHRDLKPSNLLLNANCDLK 148
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 157 bits (399), Expect = 4e-45
Identities = 73/176 (41%), Positives = 93/176 (52%), Gaps = 20/176 (11%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR PN+ MT +VVT++YRAPE+L GARHY VD+WSVGCIFAELL R
Sbjct: 142 KLADFGLAR-SFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRV 200
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
S + QLG I + LGTPT E G K + L + A+
Sbjct: 201 PFLPGDSDIDQLGKIFEALGTPTEENW----PGVTSLPDYVEFKPFPPTPLKQIFPAASD 256
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHSCMCKCCYTTPSPTSPPTL 299
+A+ LL ++L +P KRI+ AL HPY F + P+PT P L
Sbjct: 257 DALDLLQRLLTLNPNKRITARQALEHPY-------FSN--------DPAPTPPSQL 297
Score = 46.4 bits (111), Expect = 1e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L+YLHS ILHRD+KP NLL+ S+ +LK
Sbjct: 112 LRGLEYLHSNWILHRDLKPNNLLIASDGVLK 142
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), CMGC family, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CMGC family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The CMGC family consists of Cyclin-Dependent
protein Kinases (CDKs), Mitogen-activated protein
kinases (MAPKs) such as Extracellular signal-regulated
kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38,
and similar proteins. CDKs belong to a large subfamily
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. MAPKs
serve as important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in
the pathogenesis of many diseases including multiple
types of cancer, stroke, diabetes, and chronic
inflammation.
Length = 283
Score = 154 bits (391), Expect = 3e-44
Identities = 68/149 (45%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR P + T VVT++YRAPE+L+G + YS VD+WSVGCIFAELL RR
Sbjct: 138 KLADFGLARSFGS-PVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRR 196
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
LF +S + QL I LGTP PE A+ + ++ L L A+
Sbjct: 197 PLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFS--FPKKAGMPLPKLFPNASP 254
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYL 272
+A+ LL QML++DP KRI+ AL HPY
Sbjct: 255 QALDLLSQMLHYDPHKRITAEQALAHPYF 283
Score = 53.9 bits (130), Expect = 3e-08
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 336 VKEEMHKFIAEQLNTSRVPLCINPQSAAF-----KSLKYLHSARILHRDIKPGNLLVNSN 390
V E M + + + + L ++ + L + HS ILHRD+KP NLL+N+
Sbjct: 76 VFEFMDTDLYKLIKDRQRGLP-ESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTE 134
Query: 391 CILK 394
+LK
Sbjct: 135 GVLK 138
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 149 bits (379), Expect = 2e-42
Identities = 61/152 (40%), Positives = 86/152 (56%), Gaps = 8/152 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLAR+ + + + +V T++YRAPE+L GAR Y VD+W+VGCIFAELL
Sbjct: 139 KIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGS 198
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPE---EMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQ 240
LF ++ ++QL ++ LGTP E + D K K L ++
Sbjct: 199 PLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITF--PESKPIPLEEIF---PD 253
Query: 241 ATGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
A+ EA+ LL +L +DP+KR+S AL HPY
Sbjct: 254 ASPEALDLLKGLLVYDPSKRLSAAEALRHPYF 285
Score = 47.3 bits (113), Expect = 6e-06
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
K + Y+H+ I+HRD+KP NLL++++ +LK
Sbjct: 109 LKGVAYMHANGIMHRDLKPANLLISADGVLK 139
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 146 bits (370), Expect = 5e-41
Identities = 55/150 (36%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR + T V+T +YR PE+L+GA Y VD+WSVGCI AEL +
Sbjct: 140 KLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGK 199
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACD--GAKCHMLRQTRKSQSLSSLYSLSSQA 241
+FQ + ++QL I +L G+PT E + ++ K + L
Sbjct: 200 PIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDP- 258
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPY 271
A+ LL ++L DP KRIS + AL H Y
Sbjct: 259 --SALDLLDKLLTLDPKKRISADQALQHEY 286
Score = 52.2 bits (126), Expect = 1e-07
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 15/53 (28%)
Query: 342 KFIAEQLNTSRVPLCINPQSAAFKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
K +QL + L+YLHS ILHRDIK N+L+N++ +LK
Sbjct: 103 KCYMKQL---------------LEGLQYLHSNGILHRDIKGSNILINNDGVLK 140
>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine
Kinase, Cell Division Cycle 2-like 1. Serine/Threonine
Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDC2L1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDC2L1, also
called PITSLRE, exists in different isoforms which are
named using the alias CDK11(p). The CDC2L1 gene produces
two protein products, CDK11(p110) and CDK11(p58). CDC2L1
is also represented by the caspase-processed CDK11(p46).
CDK11(p110), the major isoform, associates with cyclin L
and is expressed throughout the cell cycle. It is
involved in RNA processing and the regulation of
transcription. CDK11(p58) associates with cyclin D3 and
is expressed during the G2/M phase of the cell cycle. It
plays roles in spindle morphogenesis, centrosome
maturation, sister chromatid cohesion, and the
completion of mitosis. CDK11(p46) is formed from the
larger isoforms by caspases during TNFalpha- and
Fas-induced apoptosis. It functions as a downstream
effector kinase in apoptotic signaling pathways and
interacts with eukaryotic initiation factor 3f (eIF3f),
p21-activated kinase (PAK1), and Ran-binding protein
(RanBPM).
Length = 293
Score = 145 bits (368), Expect = 1e-40
Identities = 74/158 (46%), Positives = 90/158 (56%), Gaps = 21/158 (13%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KICDFGLAR E P K TQ VVT +YRAPE+L+GA+ YS A+D+WSVGCIFAELL ++
Sbjct: 146 KICDFGLAR-EYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKK 204
Query: 184 ILFQAQSPVQQLGLITDLLGTPT----PE--EMRHACDGAKCHMLRQT----RKSQSLSS 233
LF +S + QL I LLGTPT P E+ A K + RK S
Sbjct: 205 PLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGA---KKKTFTKYPYNQLRKKFPALS 261
Query: 234 LYSLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPY 271
L + LL ++L +DP KRIS AL HPY
Sbjct: 262 L-------SDNGFDLLNRLLTYDPAKRISAEDALKHPY 292
Score = 39.9 bits (94), Expect = 0.001
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+ +LH ILHRD+K NLL+N+ ILK
Sbjct: 119 VAHLHDNWILHRDLKTSNLLLNNRGILK 146
>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Mitogen-Activated Protein Kinase MPK1.
Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MPK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of the MAPKs MPK1 from Saccharomyces
cerevisiae, Pmk1 from Schizosaccharomyces pombe, and
similar proteins. MAPKs are important mediators of
cellular responses to extracellular signals. MPK1 (also
called Slt2) and Pmk1 (also called Spm1) are
stress-activated MAPKs that regulate the cell wall
integrity (CWI) pathway, and are therefore important in
the maintainance of cell shape, cell wall construction,
morphogenesis, and ion homeostasis. MPK1 is activated in
response to cell wall stress including heat stimulation,
osmotic shock, UV irradiation, and any agents that
interfere with cell wall biogenesis such as chitin
antagonists, caffeine, or zymolase. MPK1 is regulated by
the MAP2Ks Mkk1/2, which are regulated by the MAP3K
Bck1. Pmk1 is also activated by multiple stresses
including elevated temperatures, hyper- or hypotonic
stress, glucose deprivation, exposure to cell-wall
damaging compounds, and oxidative stress. It is
regulated by the MAP2K Pek1, which is regulated by the
MAP3K Mkh1.
Length = 332
Score = 146 bits (370), Expect = 1e-40
Identities = 68/156 (43%), Positives = 92/156 (58%), Gaps = 8/156 (5%)
Query: 124 KICDFGLARVEEPDPNKA---MTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KICDFGLAR +P + MT+ V T++YRAPEI++ + Y+ A+DVWSVGCI AELL
Sbjct: 145 KICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELL 204
Query: 181 GRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQ--TRKSQSLSSLYSLS 238
GR+ +F+ + V QL I +LGTP E + + +R + S++
Sbjct: 205 GRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIF--- 261
Query: 239 SQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDE 274
A A+ LL ++L FDPTKRISV AL HPYL
Sbjct: 262 PNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAI 297
Score = 59.7 bits (145), Expect = 7e-10
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
LKY+HSA +LHRD+KPGNLLVN++C LK
Sbjct: 118 LKYIHSANVLHRDLKPGNLLVNADCELK 145
>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase 15.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 15 (MAPK15) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK15 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. Human MAPK15 is also called
Extracellular signal Regulated Kinase 8 (ERK8) while the
rat protein is called ERK7. ERK7 and ERK8 display both
similar and different biochemical properties. They
autophosphorylate and activate themselves and do not
require upstream activating kinases. ERK7 is
constitutively active and is not affected by
extracellular stimuli whereas ERK8 shows low basal
activity and is activated by DNA-damaging agents. ERK7
and ERK8 also have different substrate profiles. Genome
analysis shows that they are orthologs with similar gene
structures. ERK7 and ERK 8 may be involved in the
signaling of some nuclear receptor transcription
factors. ERK7 regulates hormone-dependent degradation of
estrogen receptor alpha while ERK8 down-regulates the
transcriptional co-activation androgen and
glucocorticoid receptors.
Length = 337
Score = 146 bits (370), Expect = 1e-40
Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 13/164 (7%)
Query: 124 KICDFGLAR----VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
K+ DFGLAR +EE N +T V T++YRAPEIL+G+ Y+ VD+WSVGCI E+
Sbjct: 147 KLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEM 206
Query: 180 LGRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLR--QTRKSQSLSSLYSL 237
L + LF S + QL I +++G P+ E++ ML +R + L L
Sbjct: 207 LLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELL-- 264
Query: 238 SSQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHS 281
+A+ +A+ LL ++L F+P KR++ AL HPY+ +FH+
Sbjct: 265 -PKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVA----QFHN 303
Score = 64.1 bits (157), Expect = 2e-11
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 16/58 (27%)
Query: 338 EEMHK-FIAEQLNTSRVPLCINPQSAAFKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
E++HK +I QL K+LKY+HS ++HRD+KP N+L+NS+C +K
Sbjct: 105 EDVHKRYIMYQL---------------LKALKYIHSGNVIHRDLKPSNILLNSDCRVK 147
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 142 bits (360), Expect = 4e-39
Identities = 66/156 (42%), Positives = 98/156 (62%), Gaps = 9/156 (5%)
Query: 124 KICDFGLARVEEP--DPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLG 181
KICDFGLAR+ +P D +T+ V T++YRAPEI++ ++ Y+ A+D+WSVGCI AE+L
Sbjct: 146 KICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLS 205
Query: 182 RRILFQAQSPVQQLGLITDLLGTPTPEEMRHAC-DGAKCHM--LRQTRKSQSLSSLYSLS 238
R LF + + QL LI +LGTP+ E++ A+ ++ L K + L+
Sbjct: 206 NRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPK-VPWNKLF--- 261
Query: 239 SQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDE 274
A +A+ LL +ML F+P KRI+V AL HPYL++
Sbjct: 262 PNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQ 297
Score = 59.2 bits (144), Expect = 9e-10
Identities = 20/28 (71%), Positives = 25/28 (89%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
LKY+HSA +LHRD+KP NLL+N+NC LK
Sbjct: 119 LKYIHSANVLHRDLKPSNLLLNTNCDLK 146
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) and CDK6-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 and CDK6
partner with D-type cyclins to regulate the early G1
phase of the cell cycle. They are the first kinase
activated by mitogenic signals to release cells from the
G0 arrested state. CDK4 and CDK6 are both expressed
ubiquitously, associate with all three D cyclins (D1, D2
and D3), and phosphorylate the retinoblastoma (pRb)
protein. They are also regulated by the INK4 family of
inhibitors which associate with either the CDK alone or
the CDK/cyclin complex. CDK4 and CDK6 show differences
in subcellular localization, sensitivity to some
inhibitors, timing in activation, tumor selectivity, and
possibly substrate profiles. Although CDK4 and CDK6 seem
to show some redundancy, they also have discrete,
nonoverlapping functions. CDK6 plays an important role
in cell differentiation.
Length = 287
Score = 138 bits (351), Expect = 2e-38
Identities = 65/149 (43%), Positives = 84/149 (56%), Gaps = 8/149 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLAR+ A+T VVT +YRAPE+L+ + Y+ VD+WSVGCIFAEL RR
Sbjct: 147 KIADFGLARIY--SFEMALTSVVVTLWYRAPEVLLQS-SYATPVDMWSVGCIFAELFRRR 203
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
LF+ S QL I D++G P+ EE + R + S + S S +
Sbjct: 204 PLFRGTSEADQLDKIFDVIGLPSEEEWP-----RNVSLPRSSFPSYTPRSFKSFVPEICE 258
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYL 272
E + LL +ML F+P KRIS AL HPY
Sbjct: 259 EGLDLLKKMLTFNPHKRISAFEALQHPYF 287
Score = 45.7 bits (109), Expect = 2e-05
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ + +LHS RI+HRD+KP N+LV S+ +K
Sbjct: 117 LRGVDFLHSHRIVHRDLKPQNILVTSDGQVK 147
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 139 bits (353), Expect = 3e-38
Identities = 84/228 (36%), Positives = 117/228 (51%), Gaps = 54/228 (23%)
Query: 124 KICDFGLAR--VEEPDPNKA-MTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
+I DFG+AR P +K MT+ V T++YRAPE+L+ Y+ A+D+WSVGCIFAE+L
Sbjct: 147 RIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEML 206
Query: 181 GRRILFQAQSPVQQLGLITDLLGTPTPEEM--RHACDGAKCHMLRQTRKS-QSLSS---- 233
GRR LF ++ V QL LI +LG+P EE+ R D + RK Q+L
Sbjct: 207 GRRQLFPGKNYVHQLKLILSVLGSP-SEEVLNRIGSD--------RVRKYIQNLPRKQPV 257
Query: 234 -LYSLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHSCMCKCCYTTPS 292
+ +A+ EA+ LL QML FDP +RI+V AL HP+L ++H
Sbjct: 258 PWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLA----QYHD----------- 302
Query: 293 PTSPPTLSIPGGGGGRQYTVDFEPSAPQPFDDTWERKLTSVQQVKEEM 340
D EP+ P PFD +E S +Q+KE +
Sbjct: 303 -------------------PDDEPTCPPPFDFDFEAIELSREQLKEAI 331
Score = 62.0 bits (151), Expect = 1e-10
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
LKY+HSA ++HRD+KP NLLVN +C L+
Sbjct: 120 LKYIHSANVIHRDLKPSNLLVNEDCELR 147
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular
signals. Sty1 and Hog1 are stress-activated MAPKs that
partipate in transcriptional regulation in response to
stress. Sty1 is activated in response to oxidative
stress, osmotic stress, and UV radiation. Sty1 is
regulated by the MAP2K Wis1, which is activated by the
MAP3Ks Wis4 and Win1, which receive signals of the
stress condition from membrane-spanning histidine
kinases Mak1-3. Activated Sty1 stabilizes the Atf1
transcription factor and induces transcription of
Atf1-dependent genes of the core environmetal stress
response (CESR). Hog1 is the key element in the high
osmolarity glycerol (HOG) pathway and is activated upon
hyperosmotic stress. Activated Hog1 accumulates in the
nucleus and regulates stress-induced transcription. The
HOG pathway is mediated by two transmembrane
osmosensors, Sln1 and Sho1.
Length = 328
Score = 138 bits (348), Expect = 1e-37
Identities = 67/151 (44%), Positives = 87/151 (57%), Gaps = 9/151 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KICDFGLAR+++P MT V T+YYRAPEI++ + Y VD+WS GCIFAE+L +
Sbjct: 148 KICDFGLARIQDPQ----MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGK 203
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQ--TRKSQSLSSLYSLSSQA 241
LF + V Q +ITDLLGTP + + C ++ R+ S + A
Sbjct: 204 PLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKF---KNA 260
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
A+ LL +ML FDP KRIS AL HPYL
Sbjct: 261 DPSAIDLLEKMLVFDPQKRISAAEALAHPYL 291
Score = 53.3 bits (128), Expect = 7e-08
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ LKY+HSA ++HRD+KP N+L+N NC LK
Sbjct: 119 RGLKYVHSAGVVHRDLKPSNILINENCDLK 148
>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase,
p38 Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), p38 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The p38 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. p38 kinases are
mitogen-activated protein kinases (MAPKs), serving as
important mediators of cellular responses to
extracellular signals. They function in the regulation
of the cell cycle, cell development, cell
differentiation, senescence, tumorigenesis, apoptosis,
pain development and pain progression, and immune
responses. p38 kinases are activated by the MAPK kinases
MKK3 and MKK6, which in turn are activated by upstream
MAPK kinase kinases including TAK1, ASK1, and MLK3, in
response to cellular stresses or inflammatory cytokines.
p38 substrates include other protein kinases and factors
that regulate transcription, nuclear export, mRNA
stability and translation. p38 kinases are drug targets
for the inflammatory diseases psoriasis, rheumatoid
arthritis, and chronic pulmonary disease. Vertebrates
contain four isoforms of p38, named alpha, beta, gamma,
and delta, which show varying substrate specificity and
expression patterns. p38alpha and p38beta are
ubiquitously expressed, p38gamma is predominantly found
in skeletal muscle, and p38delta is found in the heart,
lung, testis, pancreas, and small intestine.
Length = 343
Score = 137 bits (348), Expect = 3e-37
Identities = 79/226 (34%), Positives = 104/226 (46%), Gaps = 50/226 (22%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLAR + MT V T++YRAPEI++ HY+ VD+WSVGCI AELL +
Sbjct: 158 KILDFGLARHTD----DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGK 213
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPE-----EMRHACDGAKCHMLRQTRKSQSLSSLYSLS 238
LF + QL I +L+GTP E A + + L Q K +
Sbjct: 214 TLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQ--SLPQMPK----KDFKEVF 267
Query: 239 SQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHSCMCKCCYTTPSPTSPPT 298
S A A+ LL +ML DP KRI+ AL HPYL E Y P
Sbjct: 268 SGANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAE-------------YHDPED----- 309
Query: 299 LSIPGGGGGRQYTVDFEPSAPQPFDDTWERKLTSVQQVKEEMHKFI 344
EP AP P+D ++E + +V + KE ++K I
Sbjct: 310 ----------------EPVAP-PYDQSFESRDLTVDEWKELVYKEI 338
Score = 56.9 bits (138), Expect = 5e-09
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ LKY+HSA I+HRD+KP N+ VN +C LK
Sbjct: 129 RGLKYIHSAGIIHRDLKPSNIAVNEDCELK 158
>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent
protein Kinase 8-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK8-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK8, CDC2L6, and similar proteins. CDK8
functions as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDC2L6 also associates with
Mediator in complexes lacking CDK8. In VP16-dependent
transcriptional activation, CDK8 and CDC2L6 exerts
opposing effects by positive and negative regulation,
respectively, in similar conditions.
Length = 316
Score = 135 bits (343), Expect = 7e-37
Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 18/165 (10%)
Query: 124 KICDFGLARVEEPDPNKAMTQE---VVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI D GLAR+ P K + VVT +YRAPE+L+GARHY+ A+D+W++GCIFAELL
Sbjct: 152 KIGDLGLARLFNA-PLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELL 210
Query: 181 GRRILFQ-------AQSPVQ--QLGLITDLLGTPTPEE---MRHACDGAKCHMLRQTRK- 227
+F+ +P Q QL I ++LGTPT ++ ++ + +T+
Sbjct: 211 TLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTY 270
Query: 228 -SQSLSSLYSLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPY 271
S SL+ + + LL ++L +DPTKRI+ AL HPY
Sbjct: 271 PSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPY 315
Score = 39.6 bits (93), Expect = 0.002
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 367 LKYLHSARILHRDIKPGNLLV 387
+ YLHS +LHRD+KP N+LV
Sbjct: 121 VHYLHSNWVLHRDLKPANILV 141
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 133 bits (337), Expect = 3e-36
Identities = 69/150 (46%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI D GL R P K+ T E+VT +YRAPE+L+G+ HYS VD+WSVGCIFAE+ ++
Sbjct: 151 KIADLGLGRAFSI-PVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQ 209
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
LF S +QQL I LLGTPT + H Q K Q LS +
Sbjct: 210 PLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQW-KPQDLSRAV---PDLSP 265
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYLD 273
E + LL +ML +DP KRIS +AL HPY D
Sbjct: 266 EGLDLLQKMLRYDPAKRISAKAALTHPYFD 295
Score = 33.2 bits (76), Expect = 0.17
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVN 388
K + + H ++HRD+KP NLLV+
Sbjct: 120 LKGVAHCHKHGVMHRDLKPQNLLVD 144
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 10.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein Kinase 10 (CDK10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK10 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK10, also called PISSLRE, is essential for
cell growth and proliferation, and acts through the G2/M
phase of the cell cycle. CDK10 has also been identified
as an important factor in endocrine therapy resistance
in breast cancer. CDK10 silencing increases the
transcription of c-RAF and the activation of the p42/p44
MAPK pathway, which leads to antiestrogen resistance.
Patients who express low levels of CDK10 relapse early
on tamoxifen.
Length = 309
Score = 128 bits (323), Expect = 4e-34
Identities = 61/157 (38%), Positives = 84/157 (53%), Gaps = 15/157 (9%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLAR P K MT +VVT +YRAPE+L+G Y+ A+D+W+VGCI AELL +
Sbjct: 148 KIADFGLARTYGL-PAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHK 206
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPE------EMRHACDGAKCHMLRQTRKSQSLSSLYSL 237
L +S ++QL LI LLGTP ++ K + +Q +L +
Sbjct: 207 PLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLV---GKFTLPKQ--PYNNLKHKFPW 261
Query: 238 SSQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDE 274
S+A + LL +L +DP KR + AL Y E
Sbjct: 262 LSEA---GLRLLNFLLMYDPKKRATAEEALESSYFKE 295
Score = 40.0 bits (94), Expect = 0.001
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 356 CINPQSAAFKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
C+ Q + L+YLH I+HRD+K NLL+ LK
Sbjct: 112 CLMLQ--LLRGLQYLHENFIIHRDLKVSNLLLTDKGCLK 148
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 126 bits (318), Expect = 1e-33
Identities = 67/157 (42%), Positives = 86/157 (54%), Gaps = 20/157 (12%)
Query: 124 KICDFGLAR---VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
K+ DFGLAR V P + T EVVT +YRAPEIL+G+R YS VD+WS+GCIFAE++
Sbjct: 139 KLADFGLARAFGV----PVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMV 194
Query: 181 GRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTR----KSQSLSSL-Y 235
RR LF S + QL I LGTP + G + Q LS +
Sbjct: 195 NRRPLFPGDSEIDQLFRIFRTLGTPDED----VWPGVTSLPDYKPTFPKWARQDLSKVVP 250
Query: 236 SLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
+L + + LL +ML +DP KRIS +AL HPY
Sbjct: 251 NLDE----DGLDLLSKMLVYDPAKRISAKAALQHPYF 283
Score = 45.4 bits (108), Expect = 2e-05
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ + Y HS R+LHRD+KP NLL++ LK
Sbjct: 110 QGIAYCHSHRVLHRDLKPQNLLIDREGALK 139
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ
cell-Associated Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Male germ
cell-Associated Kinase (MAK)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae
Ime2p, Schizosaccharomyces pombe Mei4-dependent protein
3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5,
Arabidopsis thaliana MHK, and similar proteins. These
proteins play important roles during meiosis. MAK is
highly expressed in testicular cells specifically in the
meiotic phase, but is not essential for spermatogenesis
and fertility. It functions as a coactivator of the
androgen receptor in prostate cells. MRK, also called
Intestinal Cell Kinase (ICK), is expressed ubiquitously,
with highest expression in the ovary and uterus. A
missense mutation in MRK causes
endocrine-cerebro-osteodysplasia (ECO), suggesting that
this protein plays an important role in the development
of many organs. MAK and MRK may be involved in
regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 125 bits (317), Expect = 2e-33
Identities = 62/154 (40%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 120 TYSSKICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAE 178
KI DFGLAR + P T V T++YRAPEIL+ + YS+ VD+W++GCI AE
Sbjct: 135 PEVVKIADFGLAREIRSRPP---YTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAE 191
Query: 179 LLGRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLS 238
L R LF S + QL I +LGTPT ++ A R + + +SL+ L
Sbjct: 192 LYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAP--TSLHQLI 249
Query: 239 SQATGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
A+ EA+ L+ ML +DP KR + + AL HPY
Sbjct: 250 PNASPEAIDLIKDMLRWDPKKRPTASQALQHPYF 283
Score = 39.1 bits (92), Expect = 0.003
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L ++H HRD+KP NLLV+ ++K
Sbjct: 109 LQGLAHIHKHGFFHRDLKPENLLVSGPEVVK 139
>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Bypass
UAS Requirement 1 and similar proteins.
Serine/Threonine Kinases (STKs), Bypass UAS Requirement
1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
BUR1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. BUR1, also called
SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK)
that is functionally equivalent to mammalian CDK9. It
associates with the cyclin BUR2. BUR genes were
orginally identified in a genetic screen as factors
involved in general transcription. The BUR1/BUR2 complex
phosphorylates the C-terminal domain of RNA polymerase
II. In addition, this complex regulates histone
modification by phosporylating Rad6 and mediating the
association of the Paf1 complex with chromatin.
Length = 311
Score = 124 bits (314), Expect = 9e-33
Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 124 KICDFGLARV-EEPDPN---------KAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVG 173
KI DFGLAR + P PN + T VVT++YR PE+L+G R Y+ AVD+W +G
Sbjct: 155 KIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIG 214
Query: 174 CIFAELLGRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLR-QTRKSQSLS 232
C+FAE+ RR + Q +S + QL LI L GTPT E C + T ++L
Sbjct: 215 CVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLE 274
Query: 233 SLY-SLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPY 271
+ L E + LL ++L DP KR++ + AL HPY
Sbjct: 275 ERFGKLGP----EGLDLLSKLLSLDPYKRLTASDALEHPY 310
Score = 46.9 bits (112), Expect = 9e-06
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+ YLH ILHRDIK N+L+++ ILK
Sbjct: 128 INYLHENHILHRDIKAANILIDNQGILK 155
>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional.
Length = 294
Score = 123 bits (310), Expect = 2e-32
Identities = 64/163 (39%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 112 RQLVMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWS 171
+ L++ + T + K+ DFGLAR P + T EVVT +YRAPEIL+G+RHYS VD+WS
Sbjct: 131 QNLLIDRRTNALKLADFGLARAFGI-PVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWS 189
Query: 172 VGCIFAELLGRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSL 231
VGCIFAE++ ++ LF S + +L I +LGTP EE +
Sbjct: 190 VGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPN-EETWPGV--TSLPDYKSAFPKWPP 246
Query: 232 SSLYSLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDE 274
L ++ V LL +ML DP+KRI+ +AL H Y +
Sbjct: 247 KDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEHEYFKD 289
Score = 37.5 bits (87), Expect = 0.008
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVN 388
+ + Y HS R+LHRD+KP NLL++
Sbjct: 113 RGIAYCHSHRVLHRDLKPQNLLID 136
>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase (JNK) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others. They
are also essential regulators of physiological and
pathological processes and are involved in the
pathogenesis of several diseases such as diabetes,
atherosclerosis, stroke, Parkinson's and Alzheimer's.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3) that are alternatively spliced to produce at
least 10 isoforms. JNKs are specifically activated by
the MAPK kinases MKK4 and MKK7, which are in turn
activated by upstream MAPK kinase kinases as a result of
different stimuli including stresses such as ultraviolet
(UV) irradiation, hyperosmolarity, heat shock, or
cytokines. JNKs activate a large number of different
substrates based on specific stimulus, cell type, and
cellular condition, and may be implicated in seemingly
contradictory functions.
Length = 353
Score = 122 bits (308), Expect = 1e-31
Identities = 61/160 (38%), Positives = 81/160 (50%), Gaps = 14/160 (8%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLAR MT VVT+YYRAPE+++G Y VD+WSVGCI E++
Sbjct: 158 KILDFGLARTAGTS--FMMTPYVVTRYYRAPEVILGM-GYKENVDIWSVGCIMGEMIRGT 214
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHML-RQTRKSQSLSSLY------- 235
+LF + Q I + LGTP+ E M + ++ R S L+
Sbjct: 215 VLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPP 274
Query: 236 ---SLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
S + +A LL +ML DP KRISV+ AL HPY+
Sbjct: 275 DSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYI 314
Score = 51.3 bits (123), Expect = 4e-07
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+K+LHSA I+HRD+KP N++V S+C LK
Sbjct: 131 IKHLHSAGIIHRDLKPSNIVVKSDCTLK 158
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 120 bits (302), Expect = 3e-31
Identities = 61/149 (40%), Positives = 80/149 (53%), Gaps = 4/149 (2%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR P + T EVVT +YRAPE+L+G+ YS VD+WS+G IFAE+ ++
Sbjct: 141 KLADFGLARAFGI-PVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKK 199
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
LF S + QL I +LGTPT + + T SL S
Sbjct: 200 PLFHGDSEIDQLFRIFRILGTPTEDVWP---GVTSLPDYKNTFPKWKKGSLRSAVKNLDE 256
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYL 272
+ + LL +ML +DP KRIS AL HPY
Sbjct: 257 DGLDLLEKMLIYDPAKRISAKKALNHPYF 285
Score = 40.9 bits (96), Expect = 6e-04
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 369 YLHSARILHRDIKPGNLLVNSNCILK 394
+ HS R+LHRD+KP NLL+++ ++K
Sbjct: 116 FCHSRRVLHRDLKPQNLLIDNKGVIK 141
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 119 bits (301), Expect = 3e-31
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 8/150 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR P + T EVVT +YRAPEIL+G ++YS AVD+WS+GCIFAE++ RR
Sbjct: 140 KLADFGLARAFGV-PVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 198
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACD--GAKCHMLRQTRKSQSLSSLYSLSSQA 241
LF S + QL I LGTP K + R Q S + +
Sbjct: 199 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWAR--QDFSKVVPPLDE- 255
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPY 271
+ LL QML++DP KRIS +AL HP+
Sbjct: 256 --DGRDLLSQMLHYDPNKRISAKAALAHPF 283
Score = 40.2 bits (94), Expect = 0.001
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
L + HS R+LHRD+KP NLL+N+ +K
Sbjct: 113 LAFCHSHRVLHRDLKPQNLLINTEGAIK 140
>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 121 bits (304), Expect = 3e-31
Identities = 66/167 (39%), Positives = 88/167 (52%), Gaps = 29/167 (17%)
Query: 124 KICDFGLAR-------------VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVW 170
KI DFGLAR E + MT +VVT +YRAPE+LMGA Y AVD+W
Sbjct: 159 KIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMW 218
Query: 171 SVGCIFAELLGRRILFQAQSPVQQLGLITDLLGTPTPEEMRHA------CDGAKCHMLRQ 224
SVGCIFAELL + LF ++ + QLG I +LLGTP + A +
Sbjct: 219 SVGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTP------ 272
Query: 225 TRKSQSLSSLYSLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPY 271
RK + L +++ +S +A+ LL +L +P +RIS AL H Y
Sbjct: 273 -RKPKDLKTIFPNASD---DAIDLLQSLLKLNPLERISAKEALKHEY 315
Score = 31.3 bits (71), Expect = 0.82
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 356 CINPQSAAFKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
CI Q L LH +HRD+ P N+ +NS I K
Sbjct: 123 CILLQ--ILNGLNVLHKWYFMHRDLSPANIFINSKGICK 159
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 115 bits (290), Expect = 7e-30
Identities = 48/149 (32%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLA+ + ++T V T +Y APE+L+G Y VDVWS+G I ELL +
Sbjct: 138 KIADFGLAKKLL-KSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGK 196
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
F ++ + QL LI +LG P S S
Sbjct: 197 PPFSGENILDQLQLIRRILGPPLEF---------------------DEPKWSSGSE---- 231
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYL 272
EA L+ + L DP+KR + L HP+
Sbjct: 232 EAKDLIKKCLNKDPSKRPTAEEILQHPWF 260
Score = 52.3 bits (126), Expect = 1e-07
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L+YLHS I+HRD+KP N+L++ N ++K
Sbjct: 108 LRGLEYLHSNGIIHRDLKPENILLDENGVVK 138
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains
at least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene
product. OsBWMK1 enhances resistance to pathogenic
infections. It mediates stress-activated defense
responses by activating a transcription factor that
affects the expression of stress-related genes. AtMPK18
is involved in microtubule-related functions.
Length = 338
Score = 117 bits (294), Expect = 8e-30
Identities = 67/152 (44%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 124 KICDFGLARVEEPDPNKAM--TQEVVTQYYRAPEILMGA--RHYSAAVDVWSVGCIFAEL 179
KICDFGLARV D A+ T V T++YRAPE L G+ Y+ A+D+WS+GCIFAE+
Sbjct: 143 KICDFGLARVAFNDTPTAIFWTDYVATRWYRAPE-LCGSFFSKYTPAIDIWSIGCIFAEV 201
Query: 180 LGRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSS 239
L + LF ++ V QL LITDLLGTP+PE + + L RK Q +
Sbjct: 202 LTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPV-PFSQKFP 260
Query: 240 QATGEAVHLLVQMLYFDPTKRISVNSALCHPY 271
A A+ LL ++L FDP R + AL PY
Sbjct: 261 NADPLALRLLERLLAFDPKDRPTAEEALADPY 292
Score = 49.4 bits (118), Expect = 2e-06
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 25/89 (28%)
Query: 316 PSAPQPFDDTW---ERKLTSVQQV-------KEEMHKFIAEQLNTSRVPLCINPQSAAFK 365
P + + F D + E + + QV E H+F QL +
Sbjct: 70 PPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQL---------------LR 114
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+LKY+H+A + HRD+KP N+L N++C LK
Sbjct: 115 ALKYIHTANVFHRDLKPKNILANADCKLK 143
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 116 bits (291), Expect = 8e-30
Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR N + EVVT +YRAP++L+G+R YS ++D+WSVGCI AE++ R
Sbjct: 140 KLADFGLARAFGIPVNT-FSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGR 198
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
LF + QL I ++GTPT + Q L L+ A
Sbjct: 199 PLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLF---PHADP 255
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPY 271
+ LL ++L +P RIS + AL HP+
Sbjct: 256 LGIDLLHRLLQLNPELRISAHDALQHPW 283
Score = 39.4 bits (92), Expect = 0.002
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
K + + H R+LHRD+KP NLL+N LK
Sbjct: 111 KGIAFCHENRVLHRDLKPQNLLINKRGELK 140
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 114 bits (288), Expect = 1e-29
Identities = 48/149 (32%), Positives = 66/149 (44%), Gaps = 31/149 (20%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR DP + +T V T Y APE+L+G + Y AVD+WS+G I ELL +
Sbjct: 137 KLADFGLARQL--DPGEKLTTFVGTPEYMAPEVLLG-KGYGKAVDIWSLGVILYELLTGK 193
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
F QL + +G P P +S
Sbjct: 194 PPFPGDD---QLLELFKKIGKPKPPFPPP---------------EWDISP---------- 225
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYL 272
EA L+ ++L DP KR++ AL HP+
Sbjct: 226 EAKDLIRKLLVKDPEKRLTAEEALQHPFF 254
Score = 56.8 bits (138), Expect = 4e-09
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+L+YLHS I+HRD+KP N+L++ + +K
Sbjct: 107 LSALEYLHSKGIVHRDLKPENILLDEDGHVK 137
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 12.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 12 (CDK12) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK12 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK12 is also called Cdc2-related protein
kinase 7 (CRK7) or Cdc2-related kinase
arginine/serine-rich (CrkRS). It is a unique CDK that
contains an arginine/serine-rich (RS) domain, which is
predominantly found in splicing factors. CDK12 is widely
expressed in tissues. It interacts with cyclins L1 and
L2, and plays roles in regulating transcription and
alternative splicing.
Length = 302
Score = 113 bits (284), Expect = 1e-28
Identities = 55/149 (36%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR+ + ++ T +V+T +YR PE+L+G Y A+DVWS GCI EL ++
Sbjct: 156 KLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKK 215
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
+FQA + QL LI+ L G+P P + ++ K Q L S
Sbjct: 216 PIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKP--KKQYRRRLREEFSFIPT 273
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYL 272
A+ LL ML DP+KR + AL P+L
Sbjct: 274 PALDLLDHMLTLDPSKRCTAEEALNSPWL 302
Score = 31.7 bits (72), Expect = 0.57
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
L Y H LHRDIK N+L+N+ +K
Sbjct: 129 LNYCHKKNFLHRDIKCSNILLNNKGQIK 156
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 112 bits (282), Expect = 2e-28
Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR + P+K + EVVT +YR P++L+G+ YS ++D+W VGCIF E+ R
Sbjct: 143 KLADFGLARAKSV-PSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGR 201
Query: 184 ILFQAQSPVQ-QLGLITDLLGTPTPEEMR--HACDGAKCHMLRQTRKSQSLSSLYSLSSQ 240
LF + V+ QL I +LGTPT E + K + ++ L
Sbjct: 202 PLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRI 261
Query: 241 ATGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
GE L ++ L ++P KRIS A+ HPY
Sbjct: 262 PHGE--ELALKFLQYEPKKRISAAEAMKHPYF 291
Score = 40.4 bits (95), Expect = 9e-04
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
L Y H R+LHRD+KP NLL++ LK
Sbjct: 116 LAYCHQRRVLHRDLKPQNLLISERGELK 143
>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 9.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK9 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK9
together with a cyclin partner (cyclin T1, T2a, T2b, or
K) is the main component of distinct positive
transcription elongation factors (P-TEFb), which
function as Ser2 C-terminal domain kinases of RNA
polymerase II. P-TEFb participates in multiple steps of
gene expression including transcription elongation, mRNA
synthesis, processing, export, and translation. It also
plays a role in mediating cytokine induced transcription
networks such as IL6-induced STAT3 signaling. In
addition, the CDK9/cyclin T2a complex promotes muscle
differentiation and enhances the function of some
myogenic regulatory factors.
Length = 310
Score = 112 bits (282), Expect = 2e-28
Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 23/161 (14%)
Query: 124 KICDFGLARV----EEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
K+ DFGLAR + PN+ T VVT +YR PE+L+G R Y +D+W GCI AE+
Sbjct: 159 KLADFGLARAFSLSKNSKPNR-YTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEM 217
Query: 180 LGRRILFQAQSPVQQLGLITDLLGTPTPE--------EMRHACDGAKCHMLRQT-RKSQS 230
R + Q + QL LI+ L G+ TPE E+ + + + R
Sbjct: 218 WTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPY 277
Query: 231 LSSLYSLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPY 271
+ + A+ L+ ++L DP KRI ++AL H +
Sbjct: 278 VKDPH---------ALDLIDKLLVLDPAKRIDADTALNHDF 309
Score = 41.6 bits (98), Expect = 4e-04
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
L Y+H +ILHRD+K N+L+ + ILK
Sbjct: 132 LYYIHRNKILHRDMKAANILITKDGILK 159
>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine
Kinases, Mitogen-Activated Protein Kinases 4 and 6.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK4/6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. MAPK4 is also called ERK4 or
p63MAPK, while MAPK6 is also called ERK3 or p97MAPK.
MAPK4 and MAPK6 are atypical MAPKs that are not
regulated by MAP2Ks. MAPK6 is expressed ubiquitously
with highest amounts in brain and skeletal muscle. It
may be involved in the control of cell differentiation
by negatively regulating cell cycle progression in
certain conditions. It may also play a role in
glucose-induced insulin secretion. MAPK6 and MAPK4
cooperate to regulate the activity of MAPK-activated
protein kinase 5 (MK5), leading to its relocation to the
cytoplasm and exclusion from the nucleus. The MAPK6/MK5
and MAPK4/MK5 pathways may play critical roles in
embryonic and post-natal development.
Length = 342
Score = 109 bits (273), Expect = 9e-27
Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 124 KICDFGLARVEEPDPNKA--MTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLG 181
KI DFGLAR+ +P + +++ +VT++YR+P +L+ +Y+ A+D+W+ GCIFAE+L
Sbjct: 155 KIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLT 214
Query: 182 RRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQA 241
+ LF ++Q+ LI + + EE R+ +R + L L
Sbjct: 215 GKPLFAGAHELEQMQLILESVPV-VREEDRNELLNVIPSFVRND-GGEPRRPLRDLLPGV 272
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
EA+ L Q+L F+P R++ AL HPY+
Sbjct: 273 NPEALDFLEQILTFNPMDRLTAEEALMHPYM 303
Score = 46.7 bits (111), Expect = 1e-05
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 308 RQYTVDFEPSAPQPFDDTWERKLTSVQQVKEEMHKFIAEQLNTSRVPLCINPQSAAF--- 364
+ Y V + D +L SV V+E M +A L + + F
Sbjct: 66 KVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLEQGPLS---EEHARLFMYQ 122
Query: 365 --KSLKYLHSARILHRDIKPGNLLVNS 389
+ LKY+HSA +LHRD+KP N+ +N+
Sbjct: 123 LLRGLKYIHSANVLHRDLKPANVFINT 149
>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the
Serine/Threonine Kinase, p38gamma Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38gamma subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38gamma subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38gamma, also called MAPK12, is predominantly
expressed in skeletal muscle. Unlike p38alpha and
p38beta, p38gamma is insensitive to pyridinylimidazoles.
It displays an antagonizing function compared to
p38alpha. p38gamma inhibits, while p38alpha stimulates,
c-Jun phosphorylation and AP-1 mediated transcription.
p38gamma also plays a role in the signaling between Ras
and the estrogen receptor and has been implicated to
increase cell invasion and breast cancer progression. In
Xenopus, p38gamma is critical in the meiotic maturation
of oocytes.
Length = 343
Score = 106 bits (267), Expect = 5e-26
Identities = 62/154 (40%), Positives = 87/154 (56%), Gaps = 11/154 (7%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLAR + + MT VVT++YRAPE+++ HY+ VD+WSVGCI AE+L +
Sbjct: 158 KILDFGLARQTDSE----MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGK 213
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPE-EMRHACDGAKCHM--LRQTRKSQSLSSLYSLSSQ 240
LF+ + QL I + GTP+ E + + AK ++ L + RK SL
Sbjct: 214 PLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRK----KDFRSLLPN 269
Query: 241 ATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDE 274
A AV++L +ML D RI+ AL HPY +E
Sbjct: 270 ANPLAVNVLEKMLVLDAESRITAAEALAHPYFEE 303
Score = 51.1 bits (122), Expect = 4e-07
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 15/74 (20%)
Query: 321 PFDDTWERKLTSVQQVKEEMHKFIAEQLNTSRVPLCINPQSAAFKSLKYLHSARILHRDI 380
PF T KL +++ E+ +F+ Q+ K LKY+H+A I+HRD+
Sbjct: 100 PFMGTDLGKLMKHEKLSEDRIQFLVYQM---------------LKGLKYIHAAGIIHRDL 144
Query: 381 KPGNLLVNSNCILK 394
KPGNL VN +C LK
Sbjct: 145 KPGNLAVNEDCELK 158
>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the
Serine/Threonine Kinase, p38alpha Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38alpha subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38alpha subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38alpha, also called MAPK14, is expressed in
most tissues and is the major isoform involved in the
immune and inflammatory response. It is the central p38
MAPK involved in myogenesis. It plays a role in
regulating cell cycle check-point transition and
promoting cell differentiation. p38alpha also regulates
cell proliferation and death through crosstalk with the
JNK pathway. Its substrates include MAPK activated
protein kinase 2 (MK2), MK5, and the transcription
factors ATF2 and Mitf.
Length = 345
Score = 106 bits (266), Expect = 6e-26
Identities = 63/155 (40%), Positives = 85/155 (54%), Gaps = 17/155 (10%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLAR + MT V T++YRAPEI++ HY+ VD+WSVGCI AELL R
Sbjct: 160 KILDFGLAR----HTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 215
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEM-RHACDGAKCHMLRQTRKSQSLSSLYSLSSQ-- 240
LF + QL LI L+GTP E + + + + A+ ++ QSL+ + ++
Sbjct: 216 TLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYI-------QSLTQMPKMNFANV 268
Query: 241 ---ATGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
A AV LL +ML D KRI+ AL H Y
Sbjct: 269 FIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYF 303
Score = 47.7 bits (113), Expect = 6e-06
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ LKY+HSA I+HRD+KP NL VN +C LK
Sbjct: 130 LRGLKYIHSADIIHRDLKPSNLAVNEDCELK 160
>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the
Serine/Threonine Kinase, p38beta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38beta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38beta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38beta, also called MAPK11, is widely expressed
in tissues and shows more similarity with p38alpha than
with the other isoforms. Both are sensitive to
pyridinylimidazoles and share some common substrates
such as MAPK activated protein kinase 2 (MK2) and the
transcription factors ATF2, c-Fos and, ELK-1. p38beta is
involved in regulating the activation of the
cyclooxygenase-2 promoter and the expression of
TGFbeta-induced alpha-smooth muscle cell actin.
Length = 343
Score = 106 bits (265), Expect = 9e-26
Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 42/216 (19%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
+I DFGLAR + MT V T++YRAPEI++ HY+ VD+WSVGCI AELL +
Sbjct: 158 RILDFGLAR----QADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGK 213
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRH-ACDGAKCHMLRQTRKSQSLSSLYSLSSQAT 242
LF + QL I +++GTP+PE ++ + + A+ ++ Q+ L + A
Sbjct: 214 ALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYI--QSLPHMPQQDLKKIFRGAN 271
Query: 243 GEAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHSCMCKCCYTTPSPTSPPTLSIP 302
A+ LL +ML D KRIS + AL HPY + Y P
Sbjct: 272 PLAIDLLEKMLVLDSDKRISASEALAHPYFSQ-------------YHDP----------- 307
Query: 303 GGGGGRQYTVDFEPSAPQPFDDTWERKLTSVQQVKE 338
+ EP A P+D++ E K ++++ KE
Sbjct: 308 ----------EDEPEAE-PYDESPENKERTIEEWKE 332
Score = 45.8 bits (108), Expect = 2e-05
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ LKY+HSA I+HRD+KP N+ VN +C L+
Sbjct: 128 LRGLKYIHSAGIIHRDLKPSNVAVNEDCELR 158
>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the
Serine/Threonine Kinase, p38delta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38delta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38delta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38delta, also called MAPK13, is found in
skeletal muscle, heart, lung, testis, pancreas, and
small intestine. It regulates microtubule function by
phosphorylating Tau. It activates the c-jun promoter and
plays a role in G2 cell cycle arrest. It also controls
the degration of c-Myb, which is associated with myeloid
leukemia and poor prognosis in colorectal cancer.
p38delta is the main isoform involved in regulating the
differentiation and apoptosis of keratinocytes.
Length = 342
Score = 106 bits (265), Expect = 9e-26
Identities = 73/223 (32%), Positives = 109/223 (48%), Gaps = 44/223 (19%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLAR + + MT VVT++YRAPE+++ HY+ VD+WSVGCI AE+L +
Sbjct: 157 KILDFGLARHADAE----MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGK 212
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRK--SQSLSSLYSLSSQA 241
LF+ + + QL I + G P PE ++ D A ++ K + S+L+ +A
Sbjct: 213 TLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLF---PKA 269
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHSCMCKCCYTTPSPTSPPTLSI 301
+ +AV LL +ML D KR++ AL HPY D R
Sbjct: 270 SPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFR------------------------- 304
Query: 302 PGGGGGRQYTVDFEPSAPQPFDDTWERKLTSVQQVKEEMHKFI 344
D E QP+DD+ E + SV + K+ ++K +
Sbjct: 305 ---------DADEETE-QQPYDDSLENEKLSVDEWKKHIYKEV 337
Score = 49.9 bits (119), Expect = 1e-06
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
LKY+HSA I+HRD+KPGNL VN +C LK
Sbjct: 127 LCGLKYIHSAGIIHRDLKPGNLAVNEDCELK 157
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 104 bits (261), Expect = 1e-25
Identities = 58/149 (38%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR+ A+T VVT +YRAPE+L+ + Y+ VD+WSVGCIFAE+ R+
Sbjct: 148 KLADFGLARIYSC--QMALTPVVVTLWYRAPEVLLQST-YATPVDMWSVGCIFAEMFRRK 204
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
LF S QLG I DL+G P ++ + R + + S+ +
Sbjct: 205 PLFCGNSEADQLGKIFDLIGLPPEDDWP-----RDVTLPRGAFSPRGPRPVQSVVPEIEE 259
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYL 272
LL++ML F+P KRIS AL HP+
Sbjct: 260 SGAQLLLEMLTFNPHKRISAFRALQHPFF 288
Score = 36.5 bits (84), Expect = 0.019
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
L +LH+ I+HRD+KP N+LV S +K
Sbjct: 121 LDFLHANCIVHRDLKPENILVTSGGQVK 148
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in
transformation and others, like CDKL3 and CDKL5, are
associated with mental retardation when impaired. CDKL2
plays a role in learning and memory.
Length = 288
Score = 103 bits (260), Expect = 2e-25
Identities = 53/149 (35%), Positives = 72/149 (48%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+CDFG AR P +T V T++YRAPE+L+G +Y VDVW++GCI AELL
Sbjct: 140 KLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGE 199
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
LF S + QL LI LG P + + SQ S + +
Sbjct: 200 PLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSS 259
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYL 272
A+ L L DP +R++ + L HPY
Sbjct: 260 PALDFLKACLRMDPKERLTCDELLQHPYF 288
Score = 46.5 bits (111), Expect = 1e-05
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+++ Y HS I+HRDIKP N+LV+ + +LK
Sbjct: 111 QAIAYCHSHNIIHRDIKPENILVSESGVLK 140
>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK2
is specifically translocated to the mitochondria during
dopaminergic cell death. Specific substrates include the
microtubule-associated proteins DCX and Tau, as well as
TIF-IA which is involved in ribosomal RNA synthesis
regulation. Mice deficient in Jnk2 show protection
against arthritis, type 1 diabetes, atherosclerosis,
abdominal aortic aneurysm, cardiac cell death,
TNF-induced liver damage, and tumor growth, indicating
that JNK2 may play roles in the pathogenesis of these
diseases.
Length = 359
Score = 100 bits (250), Expect = 1e-23
Identities = 63/159 (39%), Positives = 85/159 (53%), Gaps = 13/159 (8%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLAR N MT VVT+YYRAPE+++G Y VD+WSVGCI EL+
Sbjct: 163 KILDFGLARTACT--NFMMTPYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGELVKGS 219
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHML-RQTRKSQSLSSLY---SLSS 239
++FQ + Q + + LGTP+ E M + ++ R S L+ S
Sbjct: 220 VIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPS 279
Query: 240 QA------TGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
++ T +A LL +ML DP KRISV+ AL HPY+
Sbjct: 280 ESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPYI 318
Score = 43.5 bits (102), Expect = 1e-04
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+K+LHSA I+HRD+KP N++V S+C LK
Sbjct: 136 IKHLHSAGIIHRDLKPSNIVVKSDCTLK 163
>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-3 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-3 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-3 shows a
restricted pattern of expression and is present in
brain, kidney, and intestine. It is elevated in
Alzheimer's disease (AD) and has been shown to associate
with paired helical filaments (PHFs) and stimulate Tau
phosphorylation. As AD progresses, phosphorylated Tau
aggregates and forms PHFs, which leads to the formation
of neurofibrillary tangles (NFTs). In human glioma
cells, PCTAIRE-3 induces cell cycle arrest and cell
death.
Length = 288
Score = 98.6 bits (245), Expect = 2e-23
Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR + P K + EVVT +YR P++L+G+ YS +D+W VGCI E+ R
Sbjct: 143 KLADFGLARAKSV-PTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGR 201
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGA--KCHMLRQTRKSQSLSSLYSLSSQA 241
+F + ++L LI LLGTPT E + ++ Q R ++ L +
Sbjct: 202 PMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDT-- 259
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
+ + LL +L ++ RIS +AL H Y
Sbjct: 260 --DGIDLLSSLLLYETKSRISAEAALRHSYF 288
Score = 38.1 bits (88), Expect = 0.005
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L Y H +ILHRD+KP NLL+N LK
Sbjct: 113 LRGLSYCHKRKILHRDLKPQNLLINEKGELK 143
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 96.6 bits (241), Expect = 9e-23
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
K+ DFG R + P T+ + T++YRAPE L+ +Y +D+W+VGC+F E+L
Sbjct: 139 KLADFGSCRGIYSKPP---YTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSL 195
Query: 183 RILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQAT 242
LF + + Q+ I D+LGTP E ++ + ++K L L +S
Sbjct: 196 FPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASA-- 253
Query: 243 GEAVHLLVQMLYFDPTKRISVNSALCHPY 271
E + LL ++L +DP +RI+ AL HPY
Sbjct: 254 -EGLDLLKKLLAYDPDERITAKQALRHPY 281
Score = 40.3 bits (95), Expect = 0.001
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCI 392
KSL ++H I HRDIKP N+L+ + +
Sbjct: 110 LKSLDHMHRNGIFHRDIKPENILIKDDIL 138
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is
expressed primarily in the brain, and to a lesser extent
in the heart and testis. Mice deficient in Jnk3 are
protected against kainic acid-induced seizures, stroke,
sciatic axotomy neural death, and neuronal death due to
NGF deprivation, oxidative stress, or exposure to
beta-amyloid peptide. This suggests that JNK3 may play
roles in the pathogenesis of these diseases.
Length = 355
Score = 97.9 bits (243), Expect = 1e-22
Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 13/160 (8%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLAR + MT VVT+YYRAPE+++G Y VD+WSVGCI E++ +
Sbjct: 159 KILDFGLART--AGTSFMMTPYVVTRYYRAPEVILGM-GYKENVDIWSVGCIMGEMVRHK 215
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSL------SSLYSL 237
ILF + + Q + + LGTP PE M+ + ++ + + + SL+
Sbjct: 216 ILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPA 275
Query: 238 SSQ----ATGEAVHLLVQMLYFDPTKRISVNSALCHPYLD 273
S+ +A LL +ML DP KRISV+ AL HPY++
Sbjct: 276 DSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYIN 315
Score = 42.4 bits (99), Expect = 2e-04
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+K+LHSA I+HRD+KP N++V S+C LK
Sbjct: 132 IKHLHSAGIIHRDLKPSNIVVKSDCTLK 159
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 5.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 5 (CDK5) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK5 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK5
is unusual in that it is regulated by non-cyclin
proteins, p35 and p39. It is highly expressed in the
nervous system and is critical in normal neural
development and function. It plays a role in neuronal
migration and differentiation, and is also important in
synaptic plasticity and learning. CDK5 also participates
in protecting against cell death and promoting
angiogenesis. Impaired CDK5 activity is implicated in
Alzheimer's disease, amyotrophic lateral sclerosis,
Parkinson's disease, Huntington's disease and acute
neuronal injury.
Length = 284
Score = 96.0 bits (239), Expect = 2e-22
Identities = 58/152 (38%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL-GR 182
K+ DFGLAR P + + EVVT +YR P++L GA+ YS ++D+WS GCIFAEL
Sbjct: 139 KLADFGLARAFGI-PVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAG 197
Query: 183 RILFQAQSPVQQLGLITDLLGTPTPEE---MRHACDGAKCHMLRQTRKSQSLSSLYSLSS 239
R LF QL I LLGTPT E + D + + +SL ++
Sbjct: 198 RPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPD------YKPYPMYPATTSLVNVVP 251
Query: 240 QATGEAVHLLVQMLYFDPTKRISVNSALCHPY 271
+ LL +L +P +RIS AL HPY
Sbjct: 252 KLNSTGRDLLQNLLVCNPVQRISAEEALQHPY 283
Score = 44.3 bits (105), Expect = 5e-05
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
K L + HS +LHRD+KP NLL+N N LK
Sbjct: 110 KGLAFCHSHNVLHRDLKPQNLLINKNGELK 139
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 95.5 bits (238), Expect = 2e-22
Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+CDFG AR+ P T V T++YRAPE+L+G Y VDVW++GC+FAELL +
Sbjct: 140 KLCDFGFARILTG-PGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQ 198
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLR--QTRKSQSLSSLYSLSSQA 241
L+ +S V QL LI LG P RH + + + ++ L S
Sbjct: 199 PLWPGKSDVDQLYLIRKTLGDLIP---RHQQIFSTNQFFKGLSIPEPETREPLESKFPNI 255
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPY 271
+ A+ L L DPT+R+S L HPY
Sbjct: 256 SSPALSFLKGCLQMDPTERLSCEELLEHPY 285
Score = 33.5 bits (77), Expect = 0.17
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+++ + H +HRD+KP N+L+ +K
Sbjct: 111 QAVNFCHKHNCIHRDVKPENILITKQGQIK 140
>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-1 is
expressed ubiquitously and is localized in the
cytoplasm. Its kinase activity is cell cycle dependent
and peaks at the S and G2 phases. PCTAIRE-1 is highly
expressed in the brain and may play a role in regulating
neurite outgrowth. It can also associate with Trap
(Tudor repeat associator with PCTAIRE-2), a
physiological partner of PCTAIRE-2; with p11, a small
dimeric protein with similarity to S100; and with 14-3-3
proteins, mediators of phosphorylation-dependent
interactions in many different proteins.
Length = 301
Score = 95.5 bits (237), Expect = 3e-22
Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR + P K + EVVT +YR P+IL+G+ YS +D+W VGCIF E+ R
Sbjct: 144 KLADFGLARAKSI-PTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGR 202
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
LF + +QL I +LGTPT E + + L++ + +
Sbjct: 203 PLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRA--DCLHNHAPRLDS 260
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHS 281
+ LL ++L F+ KRIS A+ HPY R H
Sbjct: 261 DGAELLSKLLQFEGRKRISAEEAMKHPYFHCLGERIHK 298
Score = 36.5 bits (84), Expect = 0.020
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L Y H ++LHRD+KP NLL+N LK
Sbjct: 114 LRGLNYCHRRKVLHRDLKPQNLLINERGELK 144
>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 6.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 6 (CDK6) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK6
is regulated by D-type cyclins and INK4 inhibitors. It
is active towards the retinoblastoma (pRb) protein,
implicating it to function in regulating the early G1
phase of the cell cycle. It is expressed ubiquitously
and is localized in the cytoplasm. It is also present in
the ruffling edge of spreading fibroblasts and may play
a role in cell spreading. It binds to the p21 inhibitor
without any effect on its own activity and it is
overexpressed in squamous cell carcinomas and
neuroblastomas. CDK6 has also been shown to inhibit cell
differentiation in many cell types.
Length = 290
Score = 93.9 bits (233), Expect = 1e-21
Identities = 62/148 (41%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR+ A+T VVT +YRAPE+L+ + Y+ VD+WSVGCIFAE+ R+
Sbjct: 150 KLADFGLARIYSF--QMALTSVVVTLWYRAPEVLLQSS-YATPVDLWSVGCIFAEMFRRK 206
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
LF+ S V QLG I D++G P E+ + RQ S+S + +
Sbjct: 207 PLFRGSSDVDQLGKILDVIGLPGEEDWPR-----DVALPRQAFHSKSAQPIEKFVTDIDE 261
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPY 271
LL++ L F+P KRIS SAL HPY
Sbjct: 262 LGKDLLLKCLTFNPAKRISAYSALSHPY 289
Score = 38.8 bits (90), Expect = 0.003
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L +LHS R++HRD+KP N+LV S+ +K
Sbjct: 120 LRGLDFLHSHRVVHRDLKPQNILVTSSGQIK 150
>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK1
specifically binds with JAMP (JNK1-associated membrane
protein), which regulates the duration of JNK1 activity
in response to stimuli. Specific JNK1 substrates include
Itch and SG10, which are implicated in Th2 responses and
airway inflammation, and microtubule dynamics and
axodendritic length, respectively. Mice deficient in
Jnk1 are protected against arthritis, obesity, type 2
diabetes, cardiac cell death, and non-alcoholic liver
disease, suggesting that JNK1 may play roles in the
pathogenesis of these diseases.
Length = 364
Score = 93.6 bits (232), Expect = 3e-21
Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGLAR + MT VVT+YYRAPE+++G Y VD+WSVGCI E++
Sbjct: 166 KILDFGLART--AGTSFMMTPYVVTRYYRAPEVILGM-GYKENVDIWSVGCIMGEMIKGG 222
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHML-RQTRKSQSLSSLY------- 235
+LF + Q + + LGTP PE M+ + ++ R S L+
Sbjct: 223 VLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPA 282
Query: 236 --SLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLD 273
+ +A LL +ML D +KRISV+ AL HPY++
Sbjct: 283 DSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYIN 322
Score = 42.7 bits (100), Expect = 2e-04
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+K+LHSA I+HRD+KP N++V S+C LK
Sbjct: 139 IKHLHSAGIIHRDLKPSNIVVKSDCTLK 166
>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-2 is also
referred to as ALS2CR7 (amyotrophic lateral sclerosis 2
(juvenile) chromosome region candidate 7). It may be
associated with amyotrophic lateral sclerosis 2 (ALS2),
an autosomal recessive form of juvenile ALS. The
function of PFTAIRE-2 is not yet known.
Length = 291
Score = 91.6 bits (227), Expect = 6e-21
Identities = 57/151 (37%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR + P++ + EVVT +YR P++L+GA YS+A+D+W GCIF E+L +
Sbjct: 143 KLADFGLARAKSI-PSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQ 201
Query: 184 ILFQAQSPV-QQLGLITDLLGTPTPEEMRHACDGAKCH-MLRQTRKSQSLSSLYSLSSQA 241
F S V +QL I +LG PT + K Q L ++ S+
Sbjct: 202 PAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRP 261
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
+A L QML P RIS AL HPY
Sbjct: 262 P-KAEDLASQMLMMFPKDRISAQDALLHPYF 291
Score = 37.6 bits (87), Expect = 0.007
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVN 388
+ L Y+H ILHRD+KP NLL++
Sbjct: 113 LRGLAYIHGQHILHRDLKPQNLLIS 137
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 91.6 bits (227), Expect = 9e-21
Identities = 58/160 (36%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLAR + P K + EVVT +YR P++L+G+ YS +D+W VGCIF E+ R
Sbjct: 144 KLADFGLARAKSV-PTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGR 202
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMR--HACDGAKCHMLRQTRKSQSLSSLYSLSSQA 241
LF + +L LI LLGTPT E + D K + + + ++ L +
Sbjct: 203 PLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDT-- 260
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHS 281
E + LL + L ++ KRIS A+ H Y R HS
Sbjct: 261 --EGIELLTKFLQYESKKRISAEEAMKHAYFRSLGTRIHS 298
Score = 36.1 bits (83), Expect = 0.025
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L Y H ++LHRD+KP NLL+N LK
Sbjct: 114 LRGLAYCHRRKVLHRDLKPQNLLINERGELK 144
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 90.5 bits (224), Expect = 7e-20
Identities = 52/169 (30%), Positives = 94/169 (55%), Gaps = 13/169 (7%)
Query: 112 RQLVMYQATYSSKICDFGLARVEEPDPNKAMTQEVVT----QYYRAPEILMGARHYSAAV 167
+ L++ T++ K+CDFG A+ N Q V+ ++YRAPE+++GA +Y+ +
Sbjct: 199 QNLLIDPNTHTLKLCDFGSAK------NLLAGQRSVSYICSRFYRAPELMLGATNYTTHI 252
Query: 168 DVWSVGCIFAELLGRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRK 227
D+WS+GCI AE++ +F QS V QL I +LGTPT ++++ + + K
Sbjct: 253 DLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEM-NPNYADIKFPDVK 311
Query: 228 SQSLSSLYSLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDEGR 276
+ L ++ + +A++ + Q L ++P KR++ AL P+ D+ R
Sbjct: 312 PKDLKKVFPKGTPD--DAINFISQFLKYEPLKRLNPIEALADPFFDDLR 358
Score = 36.2 bits (83), Expect = 0.026
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSN 390
++L Y+HS I HRD+KP NLL++ N
Sbjct: 181 RALAYIHSKFICHRDLKPQNLLIDPN 206
>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase Like 5.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 5 (CDKL5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. Mutations in the gene encoding CDKL5,
previously called STK9, are associated with early onset
epilepsy and severe mental retardation [X-linked
infantile spasm syndrome (ISSX) or West syndrome]. In
addition, CDKL5 mutations also sometimes cause a
phenotype similar to Rett syndrome (RTT), a progressive
neurodevelopmental disorder. These pathogenic mutations
are located in the N-terminal portion of the protein
within the kinase domain.
Length = 287
Score = 87.4 bits (216), Expect = 2e-19
Identities = 56/149 (37%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+CDFG AR N T+ V T++YR+PE+L+GA Y AVD+WSVGCI EL +
Sbjct: 140 KLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAP-YGKAVDMWSVGCILGELSDGQ 198
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLR--QTRKSQSLSSLYSLSSQA 241
LF +S + QL I +LG E+M+ + H LR QSL Y
Sbjct: 199 PLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRY--LGIL 256
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHP 270
+G + L+ +L +PT R L HP
Sbjct: 257 SGVLLDLMKNLLKLNPTDRYLTEQCLNHP 285
Score = 37.7 bits (87), Expect = 0.008
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
K++ + H I+HRDIKP NLL++ N +LK
Sbjct: 111 KAIHWCHKNDIVHRDIKPENLLISHNDVLK 140
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 2 (CDKL2) and CDKL3 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays
an important role in learning and memory. Inactivation
of CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental
retardation. It has been reported that CDKL3 is lost in
leukemic cells having a chromosome arm 5q deletion, and
may contribute to the transformed phenotype.
Length = 286
Score = 85.5 bits (212), Expect = 7e-19
Identities = 52/150 (34%), Positives = 72/150 (48%), Gaps = 6/150 (4%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+CDFG AR P + T V T++YRAPE+L+G Y AVD+W+VGC+ E+L
Sbjct: 140 KLCDFGFARTLAA-PGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGE 198
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTR--KSQSLSSLYSLSSQA 241
LF S + QL I LG P RH K + R + + + L +
Sbjct: 199 PLFPGDSDIDQLYHIIKCLGNLIP---RHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKL 255
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPY 271
+G + L Q L DP R S + L H +
Sbjct: 256 SGLVLDLAKQCLRIDPDDRPSSSQLLHHEF 285
Score = 38.5 bits (90), Expect = 0.003
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ +++ HS I+HRDIKP N+LV+ + ++K
Sbjct: 111 RGIEFCHSHNIIHRDIKPENILVSQSGVVK 140
>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 8.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK8 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK8
can act as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDK8 phosphorylates cyclin
H, a subunit of the general transcription factor TFIIH,
which results in the inhibition of TFIIH-dependent
phosphorylation of the C-terminal domain (CTD) of RNAP
II, facilitating the inhibition of transcription. It has
also been shown to promote transcription by a mechanism
that is likely to involve RNAP II phosphorylation. CDK8
also functions as a stimulus-specific positive
coregulator of p53 transcriptional responses.
Length = 317
Score = 81.6 bits (201), Expect = 3e-17
Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 19/183 (10%)
Query: 109 QPTRQLVMYQATYSS--KICDFGLARV-EEP-DPNKAMTQEVVTQYYRAPEILMGARHYS 164
+P LVM + KI D G AR+ P P + VVT +YRAPE+L+GARHY+
Sbjct: 135 KPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYT 194
Query: 165 AAVDVWSVGCIFAELLGRRILF-------QAQSPVQ--QLGLITDLLGTPTPEEMRHACD 215
A+D+W++GCIFAELL +F + +P QL I +++G P ++
Sbjct: 195 KAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKK 254
Query: 216 GAKCHML-----RQTRKSQSL-SSLYSLSSQATGEAVHLLVQMLYFDPTKRISVNSALCH 269
+ L R T + SL + + +A HLL ++L DP KRI+ A+
Sbjct: 255 MPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQD 314
Query: 270 PYL 272
PY
Sbjct: 315 PYF 317
Score = 32.0 bits (72), Expect = 0.58
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 367 LKYLHSARILHRDIKPGNLLV 387
+ YLH+ +LHRD+KP N+LV
Sbjct: 121 IHYLHANWVLHRDLKPANILV 141
>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase,
Cell Division Cycle 2-like 6. Serine/Threonine Kinases
(STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDC2L6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDC2L6 is also called CDK8-like and was
previously referred to as CDK11. However, this is a
confusing nomenclature as CDC2L6 is distinct from
CDC2L1, which is represented by the two protein products
from its gene, called CDK11(p110) and CDK11(p58), as
well as the caspase-processed CDK11(p46). CDK11(p110),
CDK11(p58), and CDK11(p46)do not belong to this
subfamily. CDC2L6 is an associated protein of Mediator,
a multiprotein complex that provides a platform to
connect transcriptional and chromatin regulators and
cofactors, in order to activate and mediate RNA
polymerase II transcription. CDC2L6 is localized mainly
in the nucleus amd exerts an opposing effect to CDK8 in
VP16-dependent transcriptional activation by being a
negative regulator.
Length = 317
Score = 80.5 bits (198), Expect = 7e-17
Identities = 65/183 (35%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 109 QPTRQLVMYQATYSS--KICDFGLARV-EEP-DPNKAMTQEVVTQYYRAPEILMGARHYS 164
+P LVM + KI D G AR+ P P + VVT +YRAPE+L+GARHY+
Sbjct: 135 KPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYT 194
Query: 165 AAVDVWSVGCIFAELLGRRILF-------QAQSPVQ--QLGLITDLLGTPTP---EEMRH 212
A+D+W++GCIFAELL +F + +P QL I ++G P E++R
Sbjct: 195 KAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRK 254
Query: 213 ACDGAKCH--MLRQTRKSQSLSSLYSLSSQATGEAVHLLVQ-MLYFDPTKRISVNSALCH 269
+ R T + SL V LL+Q +L DPTKRI+ AL
Sbjct: 255 MPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQD 314
Query: 270 PYL 272
PY
Sbjct: 315 PYF 317
Score = 31.6 bits (71), Expect = 0.70
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 367 LKYLHSARILHRDIKPGNLLV 387
+ YLH+ +LHRD+KP N+LV
Sbjct: 121 IHYLHANWVLHRDLKPANILV 141
>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-1 is
widely expressed except in the spleen and thymus. It is
highly expressed in the brain, heart, pancreas, testis,
and ovary, and is localized in the cytoplasm. It is
regulated by cyclin D3 and is inhibited by the p21 cell
cycle inhibitor. It has also been shown to interact with
the membrane-associated cyclin Y, which recruits the
protein to the plasma membrane.
Length = 303
Score = 74.0 bits (181), Expect = 9e-15
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 6/165 (3%)
Query: 113 QLVMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSV 172
Q ++ T K+ DFGLAR + P+ + EVVT +YR P++L+G+ YS +D+W V
Sbjct: 132 QNLLISDTGELKLADFGLARAKSV-PSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGV 190
Query: 173 GCIFAELLGRRILFQAQSPVQ-QLGLITDLLGTPTPEEMR--HACDGAKCHMLRQTRKSQ 229
GCIF E++ F +Q QL I +LGTP + H+ K +
Sbjct: 191 GCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERF-TLYSPK 249
Query: 230 SLSSLYSLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDE 274
+L ++ S A L ++L P R+S +AL H Y +
Sbjct: 250 NLRQAWNKLSYVN-HAEDLASKLLQCFPKNRLSAQAALSHEYFSD 293
Score = 35.1 bits (80), Expect = 0.058
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L Y+H ILHRD+KP NLL++ LK
Sbjct: 113 LRGLSYIHQRYILHRDLKPQNLLISDTGELK 143
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 71.9 bits (177), Expect = 1e-14
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
K+ DFGL+++ D + + V T Y APE+L+G +YS D+WS+G I EL
Sbjct: 133 KLADFGLSKLLTSDKSL-LKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL 187
Score = 45.7 bits (109), Expect = 1e-05
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNC 391
+ L+YLHS I+HRD+KP N+L++S+
Sbjct: 103 EGLEYLHSNGIIHRDLKPENILLDSDN 129
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 66.5 bits (163), Expect = 7e-12
Identities = 34/60 (56%), Positives = 48/60 (80%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KK KK +K EK ++K+++EKK+K+KK KKK+EE+++EK+KKEEE+ EEEEE EEE
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Score = 64.9 bits (159), Expect = 2e-11
Identities = 32/62 (51%), Positives = 49/62 (79%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK +K EK ++K++E+KK++KKK KKKE++++EEK+K++++KEEEE E EEE EE
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Query: 61 EG 62
E
Sbjct: 469 EE 470
Score = 64.6 bits (158), Expect = 2e-11
Identities = 34/60 (56%), Positives = 46/60 (76%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KK KK KK +K EKK++E+KK++KKK KKKEE+++E+K+K+EEE EEEEE EE
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Score = 61.9 bits (151), Expect = 2e-10
Identities = 28/60 (46%), Positives = 45/60 (75%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+ K+ KK +K +KK+E++KKEKKKK KK+E+++E++K+++EE +EEEE E E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Score = 60.3 bits (147), Expect = 6e-10
Identities = 28/61 (45%), Positives = 50/61 (81%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK +K EKK+E++K++KKK+ +KK+++E+++KE+K++EK+++EEE EE+EE EE
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Query: 61 E 61
+
Sbjct: 472 K 472
Score = 60.3 bits (147), Expect = 6e-10
Identities = 27/59 (45%), Positives = 48/59 (81%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+K +KK ++++K+K+KK KKKE+++++EK+KKEE+K+E++++ EEE EEEEE +
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 59.9 bits (146), Expect = 8e-10
Identities = 25/59 (42%), Positives = 51/59 (86%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
EK ++K++E+KKEKKK+ +KK++E++++KEKK++E++++E++ +EE+E EEE++ +
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 59.9 bits (146), Expect = 9e-10
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
++E + +K +K KK +K EKK+++EKK+K++K KKKEEEE EE+E+ EEE
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 63 RRRRRRRRRRRKKEREKKRS 82
+++E EKK+
Sbjct: 456 EEEEEEAEEEKEEEEEKKKK 475
Score = 59.9 bits (146), Expect = 9e-10
Identities = 27/61 (44%), Positives = 47/61 (77%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ K+ KK +K +KK +++K++KKK+ K+K+++EE++KEKK++E+EE EEE E E+
Sbjct: 407 KATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466
Query: 61 E 61
E
Sbjct: 467 E 467
Score = 58.4 bits (142), Expect = 2e-09
Identities = 23/61 (37%), Positives = 48/61 (78%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K +K K+ ++ +K++++++K+KK+K +KK++EE+++++KK+EE+E EEEE EE
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Query: 61 E 61
+
Sbjct: 466 K 466
Score = 58.0 bits (141), Expect = 3e-09
Identities = 24/74 (32%), Positives = 50/74 (67%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
KK KK +K EK +K++++++K+KKK+ ++K++E+++++E++ EE+EE EEE
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 64 RRRRRRRRRRKKER 77
+ ++KK+
Sbjct: 464 EEKEEEEEKKKKQA 477
Score = 53.8 bits (130), Expect = 7e-08
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRR 73
KK KK +K ++ +KK+E++KKE+KKK K++EE EEEE+ ++E +
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Query: 74 KKEREKKRSSR 84
+KE E+++ +
Sbjct: 465 EKEEEEEKKKK 475
Score = 53.4 bits (129), Expect = 1e-07
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRR 73
K+ KK KK EK +KK +++K+EKKK+ +++E EEEEE E++ +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 74 KKEREKKRSSRR 85
+++ E++ ++
Sbjct: 464 EEKEEEEEKKKK 475
Score = 51.5 bits (124), Expect = 4e-07
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
KK KK K+ +K EKK++EEKK++KKK + +EEEE EE+ ++ + + E
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Query: 78 EKKRSSRRKP 87
EK+ +K
Sbjct: 465 EKEEEEEKKK 474
Score = 51.1 bits (123), Expect = 5e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
KK KK +K +K +KK+EE+KKEKKKK ++EEE EEE ++ + ++
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 78 EKKRSSRRKP 87
E+K K
Sbjct: 464 EEKEEEEEKK 473
Score = 51.1 bits (123), Expect = 5e-07
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
KK +K KK +K ++K+++E+K+K+KK ++ EEEEE E+E + + +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 76 EREKKRSSRRK 86
E +++ ++K
Sbjct: 464 EEKEEEEEKKK 474
Score = 50.3 bits (121), Expect = 1e-06
Identities = 19/80 (23%), Positives = 48/80 (60%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRR 66
++E + +K K+ KK +K +K++++++++KK+K +++ EEEEE +E+ +
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 67 RRRRRRRKKEREKKRSSRRK 86
++E+E++ ++K
Sbjct: 456 EEEEEEAEEEKEEEEEKKKK 475
Score = 41.4 bits (98), Expect = 7e-04
Identities = 17/47 (36%), Positives = 38/47 (80%), Gaps = 3/47 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE---KKKKEEKKKEK 44
+KK K+K++E+++EK+KKE++K+E++++ E ++++E+KKK+
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
Score = 40.7 bits (96), Expect = 0.001
Identities = 12/63 (19%), Positives = 33/63 (52%)
Query: 30 KKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
K+ KK +K EK +K+ EE ++E++ + +++ K+++E+++ + +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 90 LSE 92
+
Sbjct: 464 EEK 466
Score = 39.5 bits (93), Expect = 0.002
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 20 KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREK 79
++E + KK KK K+ +K +KK EEE +E+++ G+++ ++K+ E+
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEK-AEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 80 KRSSRRKPFKLSEISATRPDS 100
K + + E +
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKK 475
Score = 34.9 bits (81), Expect = 0.065
Identities = 14/74 (18%), Positives = 34/74 (45%)
Query: 34 KKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
KK KK +K ++ E+ EEE+ E++ + +++ ++E ++K+ ++ +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 94 SATRPDSTIDGYQA 107
+ QA
Sbjct: 464 EEKEEEEEKKKKQA 477
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 63.7 bits (156), Expect = 2e-11
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 35/150 (23%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFG+++V + A T V T YY +PE+ Y+ D+WS+GC+ EL +
Sbjct: 143 KLGDFGISKVLSSTVDLAKTV-VGTPYYLSPELCQNKP-YNYKSDIWSLGCVLYELCTLK 200
Query: 184 ILFQAQSPVQQLGLITDLL-GTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQAT 242
F+ ++ L L +L G P + S YS
Sbjct: 201 HPFEGEN---LLELALKILKGQYPP-----------------------IPSQYS------ 228
Query: 243 GEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
E +L+ +L DP +R S+ L P++
Sbjct: 229 SELRNLVSSLLQKDPEERPSIAQILQSPFI 258
Score = 49.0 bits (118), Expect = 1e-06
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
LKYLHS +ILHRDIKP N+ + SN ++K
Sbjct: 116 LKYLHSRKILHRDIKPQNIFLTSNGLVK 143
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 63.6 bits (153), Expect = 4e-11
Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 26/162 (16%)
Query: 124 KICDFGLARV-----EEPDPNKAMTQEVVTQYYRAPEILMG--ARHYSAAVDVWSVGCIF 176
K+ DFGLA++ + V T Y APE+L+G + S++ D+WS+G
Sbjct: 142 KLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITL 201
Query: 177 AELLGRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYS 236
ELL F+ + +L S + S
Sbjct: 202 YELLTGLPPFEGEKNSSAT-------------------SQTLKIILELPTPSLASPLSPS 242
Query: 237 LSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLR 278
+ A LL ++L DP R+S +S L H L +L+
Sbjct: 243 NPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLK 284
Score = 40.9 bits (94), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSN 390
+L+YLHS I+HRDIKP N+L++ +
Sbjct: 112 SALEYLHSKGIIHRDIKPENILLDRD 137
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 62.2 bits (151), Expect = 1e-10
Identities = 36/100 (36%), Positives = 61/100 (61%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK+KE+ KE+KK+KK++ K++ K +K K++ KEK+ +EK+KEK+KK EE + EEE +
Sbjct: 107 EKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKR 166
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDS 100
E R + R ++ KK+ K+ + K + +
Sbjct: 167 ERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKG 206
Score = 62.2 bits (151), Expect = 2e-10
Identities = 31/89 (34%), Positives = 59/89 (66%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K + K+E+K++++ +++KK+KK+K K++ K++K KEE K+++ KE+E+ +E++ E
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
R ++R R R K R KK ++ P K
Sbjct: 158 RDREEEKKRERVRAKSRPKKPPKKKPPNK 186
Score = 60.7 bits (147), Expect = 4e-10
Identities = 34/100 (34%), Positives = 62/100 (62%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KE++KEK++ K+++KKKKEK K+E K +K K++ +EK+ K+K++E+E + EE +
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDS 100
E ++R R R + + ++ K+ K + E R +
Sbjct: 161 EEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAA 200
Score = 58.7 bits (142), Expect = 2e-09
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG---EEEEEG 58
K + KE K E KE++K++++ KE+KKKK++K KEE K K K+E +E +E+E+
Sbjct: 90 AKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKE 149
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKP 87
+E+ R R +K+ER + +S +KP
Sbjct: 150 KEKKVEEPRDREEEKKRERVRAKSRPKKP 178
Score = 56.8 bits (137), Expect = 9e-09
Identities = 21/83 (25%), Positives = 51/83 (61%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K+ +K K K K KE K + K+++++K++ +++K+KKK++ +E ++ + +EE
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Query: 63 RRRRRRRRRRRKKEREKKRSSRR 85
+ +R + + ++KE++ + R
Sbjct: 138 KEKRPPKEKEKEKEKKVEEPRDR 160
Score = 53.7 bits (129), Expect = 9e-08
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 3/149 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+KK ++ K KK KKK KK++ ++EK+++ ++ K K EE + EE E EE
Sbjct: 162 EEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEE 221
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQLVMYQAT 120
+ + R +++ ++ S + S S R + +
Sbjct: 222 DDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTS 281
Query: 121 YSSKICDFGLARVEEPDPNKAMTQEVVTQ 149
AR P P + +E+VT
Sbjct: 282 LRPPSARPASAR---PAPPRVKRKEIVTV 307
Score = 51.0 bits (122), Expect = 5e-07
Identities = 27/99 (27%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+K K K K ++ K E K+E+K+K++ K++++KKKEK K+E ++ + +EE +E+
Sbjct: 81 EKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDS 100
R + + + ++K+ E+ R + + + +RP
Sbjct: 141 --RPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKK 177
Score = 46.4 bits (110), Expect = 2e-05
Identities = 20/80 (25%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
K +K K K K KE K + K++++EK++ K++K++++ E+ +E ++ + +
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKK-EKPKEEPKDRKPKEE 136
Query: 68 RRRRRRKKEREKKRSSRRKP 87
+ +R KE+EK++ + +
Sbjct: 137 AKEKRPPKEKEKEKEKKVEE 156
Score = 37.9 bits (88), Expect = 0.009
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
+ K E K+ +K K + K +E K E K+EE+E E+ +E +++ + + +
Sbjct: 68 ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Query: 70 RRRRKKEREKKRSSRRKP 87
+ RK + E K K
Sbjct: 128 PKDRKPKEEAKEKRPPKE 145
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 59.3 bits (144), Expect = 4e-10
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
E+ +EK++EK K K K KK K K +++EK K +K+++ EE+ E+E + R
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRL 99
Query: 69 RR 70
R+
Sbjct: 100 RK 101
Score = 53.9 bits (130), Expect = 3e-08
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E+ +EK++EK K K + KK K K +EK+K + +K+EK +E EE E+E E+ R
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRL 99
Query: 65 RR 66
R+
Sbjct: 100 RK 101
Score = 53.1 bits (128), Expect = 5e-08
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ +EK++EK K K K KK K K ++K+K K++KEEK + EE+ E+E E+
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL---EEDTPEDELAEK 96
Query: 61 EGRRR 65
R+
Sbjct: 97 LRLRK 101
Score = 52.0 bits (125), Expect = 1e-07
Identities = 17/64 (26%), Positives = 40/64 (62%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
+++++++KE++K K + K K+ K K ++K++ K+++++K E E+ E E +
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKL 97
Query: 65 RRRR 68
R R+
Sbjct: 98 RLRK 101
Score = 30.8 bits (70), Expect = 0.93
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 16 KEKKKKEKKKKEKKKKKEKKK-KEEKKKEKKKKEEEEGEEEEEGEEE 61
EK K EK K KKKK K K K ++ +G +++ +++
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDDDDYDGYDDDFYDDD 238
Score = 30.0 bits (68), Expect = 1.8
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
EK K +K K +KKK + K K +
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDDDDYDGY 230
Score = 28.5 bits (64), Expect = 5.4
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
EK K +K K K KKK K K K + +++ ++++
Sbjct: 192 NEKLKAEKAAKGGK--KKKGKAKAKLNVGGANDDDDDYDGYDDDFYDDDD 239
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 59.1 bits (144), Expect = 6e-10
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVV-TQYYRAPEILMGARHYSAAVDVWSVGCIFAELL-G 181
K+ DFG A+ T V T Y+ APE++ G Y A D+WS+GC E+ G
Sbjct: 141 KLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEE-YGRAADIWSLGCTVIEMATG 199
Query: 182 RRILFQAQSPVQQLGLITDLLGTP 205
+ + +P+ L I P
Sbjct: 200 KPPWSELGNPMAALYKIGSSGEPP 223
Score = 54.1 bits (131), Expect = 3e-08
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
L YLHS I+HRDIK N+LV+S+ ++K
Sbjct: 114 LAYLHSNGIVHRDIKGANILVDSDGVVK 141
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 58.7 bits (143), Expect = 8e-10
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 37/151 (24%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLA+ + ++ T T Y APE+L+G Y AVD WS+G + E+L +
Sbjct: 133 KLTDFGLAKELSSEGSRTNTF-CGTPEYLAPEVLLGKG-YGKAVDWWSLGVLLYEMLTGK 190
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
F A +E+ L LS
Sbjct: 191 PPFYA----------------EDRKEIYE------------KILKDPLRFPEFLSP---- 218
Query: 244 EAVHLLVQMLYFDPTKRISVNSALC---HPY 271
EA L+ +L DPTKR+ A HP+
Sbjct: 219 EARDLISGLLQKDPTKRLGSGGAEEIKAHPF 249
Score = 39.4 bits (93), Expect = 0.002
Identities = 12/23 (52%), Positives = 20/23 (86%)
Query: 367 LKYLHSARILHRDIKPGNLLVNS 389
L+YLHS I++RD+KP N+L+++
Sbjct: 106 LEYLHSLGIIYRDLKPENILLDA 128
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 56.2 bits (136), Expect = 5e-09
Identities = 39/152 (25%), Positives = 58/152 (38%), Gaps = 36/152 (23%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVV-TQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
I DF +A PD +T T Y APE+L + YS AVD WS+G E L
Sbjct: 140 HITDFNIATKVTPD---TLTTSTSGTPGYMAPEVLC-RQGYSVAVDWWSLGVTAYECLRG 195
Query: 183 RILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQAT 242
+ ++ S T +++R +Q + +S
Sbjct: 196 KRPYRGHS------------RTIR-DQIRA----------KQETADVLYPATWST----- 227
Query: 243 GEAVHLLVQMLYFDPTKRISVN--SALCHPYL 272
EA+ + ++L DP KR+ N HPY
Sbjct: 228 -EAIDAINKLLERDPQKRLGDNLKDLKNHPYF 258
Score = 41.5 bits (98), Expect = 4e-04
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 367 LKYLHSARILHRDIKPGNLL 386
L+YLHS I+HRDIKP N+L
Sbjct: 113 LEYLHSKGIIHRDIKPDNIL 132
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 57.1 bits (137), Expect = 1e-08
Identities = 21/86 (24%), Positives = 46/86 (53%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KK+ KKK ++ +K + K + + E + EEK + +KK+EE ++ + ++
Sbjct: 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
+ +++ ++K E +KK++ K
Sbjct: 1386 KAEEKKKADEAKKKAEEDKKKADELK 1411
Score = 54.8 bits (131), Expect = 6e-08
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK-EKKKKEEEEGEEEEEGEE 60
++ +K E K + + + + +EK + EKKK+E KKK + KK+ EE ++ +E ++
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
+ +++ +K KK++ K
Sbjct: 1399 KAEEDKKKADELKKAAAAKKKADEAK 1424
Score = 54.4 bits (130), Expect = 8e-08
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE---KKKKEEKKK--EKKKKEEEEGEEEE 56
K + + + E +EK + +KKKE+ KKK KKK EEKKK E KKK EE+ ++ +
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E ++ +++ ++K E +KK +K
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
Score = 53.2 bits (127), Expect = 2e-07
Identities = 21/85 (24%), Positives = 46/85 (54%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KKK ++ +KK + K+K ++ KK E K + + +E + ++K E E ++EE ++
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRK 86
+++ +++ E +KK +K
Sbjct: 1381 DAAKKKAEEKKKADEAKKKAEEDKK 1405
Score = 53.2 bits (127), Expect = 2e-07
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 1 EKKKE---KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE---KKKEKKKKEEEEGEE 54
E KK K E + + + +EK + +KKK+E KKK + KK E+KKK +E ++
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Query: 55 EEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
EE +++ ++ ++K + KK++ +K
Sbjct: 1400 AEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Score = 52.8 bits (126), Expect = 2e-07
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KK ++++KK E+ K+K+ +EKKK E+ KK E++ K + +E KK EE++ + EE +
Sbjct: 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E ++ +++ E KK +K
Sbjct: 1684 EEDEKKAAEALKKEAEEAKKAEELKK 1709
Score = 52.5 bits (125), Expect = 3e-07
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK--EKKKKEEEEGEEEEEG 58
+ +E KK ++ +KK E+ KK ++ ++K + KK+ EE KK E KKKE EE ++ EE
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSS 83
++ + + +K+ E K+ +
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKA 1746
Score = 50.9 bits (121), Expect = 8e-07
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE---- 57
KKK ++ +KK ++ K+ + +KK E KK +E KK +E KK ++ K+ +E ++ EE
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548
Query: 58 -----GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTR 112
EE + +++ KK E K + RK + + R + + Y+ + +
Sbjct: 1549 DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
Score = 50.9 bits (121), Expect = 9e-07
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK--EEKKKEKKKKEEEEGEEEEEG 58
EKKK + +KK E+ K+ + +KK +E KK +E KKK E KK ++ KK+ EE ++ +E
Sbjct: 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+++ +++ +K KK++ K
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAK 1516
Score = 50.9 bits (121), Expect = 9e-07
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 1 EKKKEKKKEKKKEKKK--EKKKKEKKKKE---KKKKKEKKKKEEKKK---EKKKKEEEEG 52
+ + E +EK + EKKK+E KKK KKK +EKKK +E KK E KKK +E
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411
Query: 53 EEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+ ++ +++ +++ E +KK +K
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 50.9 bits (121), Expect = 9e-07
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE--KKKKKEKKKKEE--KKKEKKKKEEEEGEEEE 56
++ K+K +E KK + +KK +E KK E KKK +E KK +E KK E+ KK +E ++ E
Sbjct: 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E +++ ++ ++K + KK +K
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Score = 50.5 bits (120), Expect = 1e-06
Identities = 27/93 (29%), Positives = 55/93 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ K+ ++EKKK ++ +KK+ E+KKK ++ KK +++ + K E+ KK EE+ ++ EE ++
Sbjct: 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
++ +K+ E K++ K + E
Sbjct: 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
Score = 50.5 bits (120), Expect = 1e-06
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKKEKKKKEEEEGEEEEEG 58
E KK + +KK E+ K+K KKK E+ KK K + E ++ + EE+ E E+
Sbjct: 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Query: 59 EEEGRRR----RRRRRRRRKKEREKKRSSRRK 86
+EE +++ +++ ++K + KK++ K
Sbjct: 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
Score = 50.1 bits (119), Expect = 2e-06
Identities = 33/109 (30%), Positives = 62/109 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++K+K ++ KK++ +EKKK E+ KK +++ K K +E KK E+ KK+ EE ++ EE E+
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQ 109
+ ++ KK E K+ + K E+ ++ I +A++
Sbjct: 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
Score = 49.8 bits (118), Expect = 2e-06
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKE--KKKKEKKKKKE--KKKKEEKKK--EKKKKEEEEGEE 54
E +EK + +K+K++ KKK + KKK E+KKK + KKK EE KK ++ KK ++
Sbjct: 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Query: 55 EEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+E +++ +++ ++K E KK +K
Sbjct: 1420 ADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
Score = 49.4 bits (117), Expect = 3e-06
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE--KKKEKKKKEEEEGEEEEEG 58
+KK E+ K+K E KK K+K + KKK +EKKK +E KK E+ KK +E ++ EE
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
++ +++ ++ E +KK +K
Sbjct: 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
Score = 49.4 bits (117), Expect = 3e-06
Identities = 27/85 (31%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KK E+ K+K +E KK ++ ++K + KK+ E+ KK E+ K+K+ +E+++ EE ++ EEE
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRK 86
+ + +++ E +KK++ K
Sbjct: 1728 --NKIKAEEAKKEAEEDKKKAEEAK 1750
Score = 49.4 bits (117), Expect = 3e-06
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKK-EKKKKEEEEGEEEEE 57
EKKK + +KK E+ K+K + KK KKK + KKK EEKKK ++ KK+ EE ++ +E
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+++ ++ ++K E KK +K
Sbjct: 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477
Score = 49.4 bits (117), Expect = 3e-06
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKK-EKKKKEEEEGEEEEE 57
E KK+ + KK K+K + KKK E+KKK + KKK EE KK ++ KK+ EE ++ EE
Sbjct: 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+++ ++ ++K E KK +K
Sbjct: 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKK 1490
Score = 49.0 bits (116), Expect = 4e-06
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK--EKKKKEEEEGEEEEEG 58
+KK + K+K +EKKK + K+K +++KKK E KK KK ++ KK+ EE ++ +E
Sbjct: 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+++ ++ ++K E KK +K
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Score = 49.0 bits (116), Expect = 4e-06
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+KK+ + KK E+KK+ + +KK +E KK E KKK E+ K+K +++ EE ++ E
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
+ + EK ++ +K
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKK 1372
Score = 49.0 bits (116), Expect = 4e-06
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKK--EKKKKKEKKKKEE-KKKEKKKKEEEEGEEEEE 57
+K E KK ++ +K E KK E+ KK E KK +EKKK +E KK E+ KK EE+ + EE
Sbjct: 1510 KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEA 1569
Query: 58 GEEEGRRRRRRRRRRRKKEREKKR 81
+ E + R+ K+ E+ R
Sbjct: 1570 KKAEEDKNMALRKAEEAKKAEEAR 1593
Score = 49.0 bits (116), Expect = 4e-06
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KK ++ +KK E+ K+ + +KK +E KK E KKK E+ K+K + ++ E +++ +E
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
+ ++ KK E K++ K
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEAK 1540
Score = 48.6 bits (115), Expect = 4e-06
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE---KKKEKKKKEEEEGEEEEE 57
+KK E+ K+ + KKK ++ K+K KKK +E KK E + E E E EE+ E
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
E+ + +++ KK+ E+K+ + K E
Sbjct: 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
Score = 48.6 bits (115), Expect = 5e-06
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKK-EKKKKEEEEGEEEEE 57
KK+ + KKK ++K+K + KKK E+ KK + KKK EE KK E+ KK+ EE ++ +E
Sbjct: 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+++ ++ ++K E KK++ K
Sbjct: 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAK 1503
Score = 48.6 bits (115), Expect = 5e-06
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE--KKKEKKKKEEEEGEEEEEG 58
+KK E+KK+ + KKK ++ K+K + KK KKK +E KK E+KKK +E ++ EE
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA 1443
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
++ +++ ++ +E +KK +K
Sbjct: 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 48.2 bits (114), Expect = 6e-06
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE--KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
E KK ++ EKK + +K+ +E KK E KKK+ E+KKK E E KK EEE + EE
Sbjct: 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE---ELKKAEEENKIKAEEA 1735
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPD 99
++E +++ +K E EKK+ + K + + R +
Sbjct: 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
Score = 47.8 bits (113), Expect = 8e-06
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE--KKKKKEKKKKEEKKK---EKKKKEEE--EGE 53
++ K+K +E KK ++ +KK +E KK + KKK +E KK +E KK E KKK +E +
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506
Query: 54 EEEEGEEEGRRRRRRRRRRRKKEREKKRSS 83
E ++ +E ++ ++ K+ E+ + +
Sbjct: 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKA 1536
Score = 47.8 bits (113), Expect = 9e-06
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKK----EKKKKEEKKKEKKKKEEEEGEEEEEG 58
+K+K++ KKK +KK +EKKK ++ KKK +KK E KK KK+ +E +++ E
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+++ +++ +K + KK++ K
Sbjct: 1430 KKKADEAKKKAEEAKKADEAKKKAEEAK 1457
Score = 47.4 bits (112), Expect = 1e-05
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK---EKKKKEEEEGEEEEE 57
E KK + +KK E+ K+ ++ +KK +E KK E KKK E+ K E KKK EE ++ +E
Sbjct: 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRR 85
++ +++ ++ +E +K +++
Sbjct: 1502 AKKAAEAKKKADEAKKAEEAKKADEAKK 1529
Score = 47.1 bits (111), Expect = 1e-05
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE----KKKKEEEEGEEEE 56
EKKK + +K +EKKK + K+K ++ KK + KKK EE KK+ KKK EE + E
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E K E +K+ K
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Score = 47.1 bits (111), Expect = 1e-05
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE---KKKEKKKKEEEEGEEEEE 57
E KK +KK ++ K+K +++KK E KKK E+ KK + KK E+ KK EE ++ EE
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
++ +++ ++ E +KK +K
Sbjct: 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKK 1497
Score = 46.7 bits (110), Expect = 2e-05
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE---GEEEEE 57
+K +E KK + +KK E+ KK + K+K ++ +KK E KK + KK+ +E EE ++
Sbjct: 1464 KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+E + ++ KK EKK++ K
Sbjct: 1524 ADEAKKAEEAKKADEAKKAEEKKKADELK 1552
Score = 46.7 bits (110), Expect = 2e-05
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+KK K +E KK ++ + K +E KK E++KKK ++ K+++ +EKKK EE + EEE +
Sbjct: 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
++ ++K E KK K
Sbjct: 1663 AAEEAKKAEEDKKKAEEAKKAEEDEK 1688
Score = 46.7 bits (110), Expect = 2e-05
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKK--EKKKKEEEEGEEEE 56
EKKK + +KK E+ K+ + +KK +E KKK + KKK EE KK E K E E +E
Sbjct: 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E EE + +KKE KK++ K
Sbjct: 1360 EAAEE-----KAEAAEKKKEEAKKKADAAK 1384
Score = 46.7 bits (110), Expect = 2e-05
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKK--EKKKKEEEEGEEEE 56
E KK + +KK E+ K+ + +KK +E KKK + KK E KKK E KK EE + +E
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA 1527
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSS 83
+ EE ++ ++ KK+ ++ + +
Sbjct: 1528 KKAEEAKKADEAKKAEEKKKADELKKA 1554
Score = 46.3 bits (109), Expect = 2e-05
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK--EKKKKEEEEGEEEEEG 58
+K +EKKK + +KK E+ KK + K+K ++ +KK KKK E KK E E E
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
+E + KK+ E K+ + K E
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
Score = 44.7 bits (105), Expect = 8e-05
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKK--EKKKKKEKKKKEEKKK-EKKKKEEEEGEEEEE 57
+K E KK ++ +K E KK E+KKK E KK +E KK EEKKK E+ KK EE+
Sbjct: 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQLVMY 117
EE ++ R K E+++ + + K +E + + + + ++ QL
Sbjct: 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
Query: 118 QA 119
+A
Sbjct: 1642 EA 1643
Score = 44.0 bits (103), Expect = 1e-04
Identities = 26/86 (30%), Positives = 53/86 (61%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++K+ K E+ K+ ++ K K E+ KK +++KK+ ++ ++K+ E+KKK EE + EEE +
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
+ ++ +KK E K++ +
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDE 1687
Score = 44.0 bits (103), Expect = 1e-04
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE---KKKEKKKKEEEEGEEEEEGEEEGR 63
K E+ ++ + KK +EKKK ++ KK E+KKK + KK E+ KK +E ++ EE +++
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332
Query: 64 RRRRRRRRRRKKEREKKRSSRRKPFKL 90
+++ +K K + +
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEA 1359
Score = 42.1 bits (98), Expect = 5e-04
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKK---EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E+ K K +E KKE +++KKK E+ KK EKKK KK+EEKK E+ +KE+E EEE
Sbjct: 1726 EENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
Query: 58 GEEEGRRRRRRRRR 71
EE+ +RR ++
Sbjct: 1786 DEEDEKRRMEVDKK 1799
Score = 42.1 bits (98), Expect = 5e-04
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKKE---KKKKEEEEGEEE 55
E + E+ + +E+KK K ++ KK +E K K E KK +EEKKK KKK+ EE+ + E
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
Query: 56 EEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E + E + + +K E +KK++ K
Sbjct: 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
Score = 41.7 bits (97), Expect = 7e-04
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK-EKKKKEEEEGEEEEEGEEEGRR 64
+++ K ++ K + KK +EKKK E KK EEKKK ++ KK+ EE ++ +E +++
Sbjct: 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
Query: 65 RRRRRRRRRKKEREKKRSSRRK 86
+++ +KK E K+++
Sbjct: 1327 AKKKADAAKKKAEEAKKAAEAA 1348
Score = 38.6 bits (89), Expect = 0.006
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
+K E+ + +++ K +E +K E KK EEKKK + K+ EE ++ +E +++
Sbjct: 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
Query: 66 RRRRRRRRKKEREKKRSSRRK 86
++ ++K E KK++ K
Sbjct: 1315 KKADEAKKKAEEAKKKADAAK 1335
Score = 38.6 bits (89), Expect = 0.007
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK--EEKKKEKKKKEEEEGEEEEEGE 59
K +E + ++ K +E +K ++ KK E+KKK E KK E+KKK +E ++ EE +
Sbjct: 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRK 86
+ +++ ++K + KK++ K
Sbjct: 1316 KADEAKKKAEEAKKKADAAKKKAEEAK 1342
Score = 38.6 bits (89), Expect = 0.007
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 1 EKKK----EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK---------EKKKK 47
E KK +KK+ ++K+K +E KK E++ K K ++ +K+ +E+KKK EKKK
Sbjct: 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
+ EEE++ EE + + +E EK+R K K
Sbjct: 1760 AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
Score = 37.0 bits (85), Expect = 0.019
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ K +E KK + + ++ K ++ KKK ++ +K EE +K + ++ EE + E+ +
Sbjct: 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKR 1153
Query: 61 EGRRRRRRRRRR----RKKEREKKRSSRRK 86
R+ R+ RK E KK + RK
Sbjct: 1154 VEIARKAEDARKAEEARKAEDAKKAEAARK 1183
Score = 36.7 bits (84), Expect = 0.025
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
K +E++K ++ K + KK + KK +E KK E E KK EEE EE EE R
Sbjct: 1207 KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE---EAKKAEEERNNEEIRKFEEARMA 1263
Query: 66 RRRRRRRRKKEREKKRSSRRK 86
RR+ K E +++ K
Sbjct: 1264 HFARRQAAIKAEEARKADELK 1284
Score = 35.1 bits (80), Expect = 0.079
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK--EKKKKEEEEGEEEEEG 58
+ K++ + ++ E+ K ++ KK + K ++ +K +E KKK + +K EE E+
Sbjct: 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARK 1141
Query: 59 EEEGRRRR--RRRRRRRKKEREKKRSSRRKPFKLSEISATR 97
EE R+ +R RK E +K RK + A R
Sbjct: 1142 AEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAAR 1182
Score = 34.3 bits (78), Expect = 0.15
Identities = 19/88 (21%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KK+ ++ KK E+++ ++ K ++ + +++ K +E +K +E + EE++ +
Sbjct: 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293
Query: 61 EGRRRRRRRR--RRRKKEREKKRSSRRK 86
E ++ +++ +KK E K++ K
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAKKADEAK 1321
Score = 33.6 bits (76), Expect = 0.21
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE----KKKKEEKKKEKKKKEEEEGEEEE 56
E +E + ++ KK E K E+ +K ++ KK+ +K +E +K E +K EE + E+
Sbjct: 1091 EATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAED 1150
Query: 57 EGEEEGRRRRRRRRR----RRKKEREKKRSSRR 85
E R+ R+ R+ ++ +K ++R+
Sbjct: 1151 AKRVEIARKAEDARKAEEARKAEDAKKAEAARK 1183
Score = 32.8 bits (74), Expect = 0.41
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKK---EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
K +E +K ++ K ++ +K E +K E+K ++ +K ++ KK E KK EE ++ EE
Sbjct: 1183 KAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA 1242
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
++ R R+ ++ R + R+ K E
Sbjct: 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
Score = 32.8 bits (74), Expect = 0.43
Identities = 19/94 (20%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE--EGEEEEEG 58
E+ K+ +E KK +++ ++ +K +E + +++ K E+ +K +E + EE+++
Sbjct: 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKA 1292
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
+E + +++ KK+ E+ + + K E
Sbjct: 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
Score = 32.4 bits (73), Expect = 0.46
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KK + + ++ +K E+ KK+ + K ++ K + K +E +K E+ + E E
Sbjct: 1102 EAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE 1161
Query: 61 EGRRRRRRRRRRRKKEREKKRSS 83
+ R+ R+ K+ E R +
Sbjct: 1162 DARKAEEARKAEDAKKAEAARKA 1184
Score = 32.0 bits (72), Expect = 0.67
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKK--EKKKKKEKKKKEEKKK--EKKKKEEEEGEEEEE 57
K ++ +K ++ K ++ KK E +K E +K +E +K E+ +K +K EEE EE
Sbjct: 1159 KAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEAR 1218
Query: 58 GEEEGRRRR--RRRRRRRKKEREKKRSSRRK 86
E+ ++ ++ +K E K++ +
Sbjct: 1219 KAEDAKKAEAVKKAEEAKKDAEEAKKAEEER 1249
Score = 30.5 bits (68), Expect = 2.0
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE---KKKEKKKKEEEEGEEEEEGEEEG 62
KK E ++ ++ +K +E +K E +K E +K E K +E +K E+ + E + EE
Sbjct: 1176 KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEA 1235
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQ 109
++ ++ E E+ RK + R + I +AR+
Sbjct: 1236 KKDAEEAKK---AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
Score = 30.1 bits (67), Expect = 3.0
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE--EGEEEGRR 64
+ K K + KE + ++ ++ K EE KK + K EE + EE + E+ R+
Sbjct: 1070 EGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARK 1129
Query: 65 RRRRRRRRRKKEREKKRSS 83
R+ ++ E+ R +
Sbjct: 1130 AEEARKAEDARKAEEARKA 1148
Score = 29.7 bits (66), Expect = 3.3
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE---KKKKEEKKKEKKKKEEE--------- 50
++E+K E+ ++ + KK + KK E+ KK KK +EE+ E+ +K EE
Sbjct: 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR 1268
Query: 51 ----EGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+ EE + +E + +++ KK EKK++ K
Sbjct: 1269 QAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAK 1308
Score = 28.6 bits (63), Expect = 8.3
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK--EKKKKEEEEGEEEEEGEEEGR 63
K +E +K + ++ + +K ++ +K +E +K E+ KK +K EE EE E+ R
Sbjct: 1141 KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR 1200
Query: 64 R--RRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDS 100
+ R+ RK E +K +K + + + D+
Sbjct: 1201 KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDA 1239
Score = 28.6 bits (63), Expect = 8.7
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK--EKKKKEEEEGEEEEEG 58
E K E K +++ + K+ K+ + + EE E+ KK E EE
Sbjct: 1057 EGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARK 1116
Query: 59 EEEGRRRRRRRRR----RRKKEREKKRSSRR 85
EE +++ R+ R+ ++ K +R+
Sbjct: 1117 AEEAKKKAEDARKAEEARKAEDARKAEEARK 1147
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 54.9 bits (133), Expect = 1e-08
Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 33/149 (22%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGLA++ D + A T V T YY +PE L Y D+WS+GC+ EL
Sbjct: 150 KLGDFGLAKILGHDSSFAKTY-VGTPYYMSPEQLNHMS-YDEKSDIWSLGCLIYELCALS 207
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
F A++ +Q I + P R S L+ +
Sbjct: 208 PPFTARNQLQLASKIKEGKFRRIPY-----------------RYSSELNEVIKS------ 244
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYL 272
ML DP KR S L P +
Sbjct: 245 --------MLNVDPDKRPSTEELLQLPLI 265
Score = 33.8 bits (78), Expect = 0.12
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 367 LKYLH-----SARILHRDIKPGNLLVNSNCILK 394
L H +LHRD+KP N+ +++N +K
Sbjct: 118 LYECHNRSDPGNTVLHRDLKPANIFLDANNNVK 150
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 55.3 bits (134), Expect = 2e-08
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
EKK K +K K+ EKK+KEK+K + KK+ K K+++ EE
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 54.6 bits (132), Expect = 4e-08
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
K +K+ K KK K+ +KK+++K+K + KK+ K K+ + G EE
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 54.2 bits (131), Expect = 5e-08
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+K+ K KK K +KKEK+K++ K KK + + K +K E
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSE 433
Score = 46.5 bits (111), Expect = 1e-05
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K K ++K + KK K+ +KK+KEK+K + KK+ + K
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 41.5 bits (98), Expect = 6e-04
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K + ++ + K K +K+ K KK ++ +K+EK+KEK K
Sbjct: 366 EPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKV------------- 412
Query: 61 EGRRRRRRRRRRRKKEREKKRSS 83
++R R + K R+ +S
Sbjct: 413 ---KKRHRDTKNIGKRRKPSGTS 432
Score = 36.8 bits (86), Expect = 0.016
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 20/84 (23%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+E K + ++ + K K +KK K K+ K +KKEK+K+
Sbjct: 365 EEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKE---------------- 408
Query: 64 RRRRRRRRRRKKEREKKRSSRRKP 87
+ + ++R R + K RRKP
Sbjct: 409 -KPKVKKRHRDTKNIGK---RRKP 428
Score = 29.5 bits (67), Expect = 2.9
Identities = 14/67 (20%), Positives = 33/67 (49%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
E+ K + E + K + +++ K KK + E++E+ +E+ + ++R R + +
Sbjct: 365 EEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Query: 77 REKKRSS 83
R K +
Sbjct: 425 RRKPSGT 431
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 53.2 bits (128), Expect = 2e-08
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E +K KK+ ++K+K K KKKK KKKK+K K K+ KK++K ++K +KE E+ E+
Sbjct: 70 EIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSY 129
Query: 61 EG----------------------RRRRRRRRRRRKKEREKKRSSRRKP 87
R R+RR KKE E+ ++ P
Sbjct: 130 SETLSTLSELKPRKYALHKDIYQSRLDRKRRAEVAKKEAEELQNPGFFP 178
Score = 52.8 bits (127), Expect = 3e-08
Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 2 KKKEKKKEKKKEKKK-EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
KKKE +E +K KK+ E+K+K K KK+K KKK+ K K++K +K K E++ E+E E
Sbjct: 63 KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 45.8 bits (109), Expect = 7e-06
Identities = 21/75 (28%), Positives = 47/75 (62%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
+KKK++ E+ +K KK+ E+K+K + KKK+ KKK+ K K++++ +++++ E++ +
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Query: 69 RRRRRKKEREKKRSS 83
+ K + S+
Sbjct: 121 KLEDLTKSYSETLST 135
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 54.0 bits (130), Expect = 2e-08
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 37/151 (24%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVV-TQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
K+ DFG++++ + +M + VV T YY +PE+ G + Y+ D+W++GC+ ELL
Sbjct: 141 KLGDFGISKILGSE--YSMAETVVGTPYYMSPELCQGVK-YNFKSDIWALGCVLYELLTL 197
Query: 183 RILFQAQSPVQQLGLITDLL-GTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQA 241
+ F A +P L L+ ++ G TP S
Sbjct: 198 KRTFDATNP---LNLVVKIVQGNYTPVV-----------------------------SVY 225
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
+ E + L+ +L DP KR + + L P L
Sbjct: 226 SSELISLVHSLLQQDPEKRPTADEVLDQPLL 256
Score = 34.0 bits (78), Expect = 0.091
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 369 YLHSARILHRDIKPGNLLVNSNCILK 394
Y+H A ILHRDIK N+ + ++K
Sbjct: 116 YIHKAGILHRDIKTLNIFLTKAGLIK 141
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 52.8 bits (127), Expect = 4e-08
Identities = 27/81 (33%), Positives = 59/81 (72%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
KK K++ K ++K+ ++++++ +E+++++ KK +E+++ E+K++EE E E E++ EEE
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 63 RRRRRRRRRRRKKEREKKRSS 83
R+ R + R+ ++E EK +SS
Sbjct: 61 RKEREEQARKEQEEYEKLKSS 81
Score = 42.8 bits (101), Expect = 1e-04
Identities = 23/68 (33%), Positives = 47/68 (69%), Gaps = 6/68 (8%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKE---KKKKKEKKKKEEKKKEKKKKE---EEEGEEE 55
KK E+K+E ++++++E +++ +KKKE +K+++E+ +KE+++ EK K EEEG ++
Sbjct: 32 KKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDK 91
Query: 56 EEGEEEGR 63
+EE
Sbjct: 92 LSADEESN 99
Score = 39.3 bits (92), Expect = 0.001
Identities = 19/68 (27%), Positives = 53/68 (77%), Gaps = 7/68 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE------ 54
E+++ ++++K +EK++ ++K+E++ +E+++KK+++++ ++++E+ +KE+EE E+
Sbjct: 24 EEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFV 83
Query: 55 -EEEGEEE 61
EEEG ++
Sbjct: 84 VEEEGTDK 91
Score = 35.8 bits (83), Expect = 0.020
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRS 82
KK KK+ K ++K + ++++++ EEEE EE ++ EE+ R+ ++ +KK
Sbjct: 1 KKIGAKKRAKLEEK--QARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEE 58
Query: 83 SRRKPFKLSEI 93
RK +
Sbjct: 59 EERKEREEQAR 69
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 54.9 bits (133), Expect = 4e-08
Identities = 17/87 (19%), Positives = 36/87 (41%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E +KE+ K + +E+ K + ++ + +++ K + +E + E+
Sbjct: 42 EARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAED 101
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKP 87
E R RR K ++ K+ KP
Sbjct: 102 EAARPAEAAARRPKAKKAAKKKKGPKP 128
Score = 53.7 bits (130), Expect = 9e-08
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E +++ + ++ + KK +KKK + KK+K K++ G + +G +
Sbjct: 89 AAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGK 148
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
RRRR RRRRR+KK+++K + + E
Sbjct: 149 GRRRRRGRRRRRKKKKKQKPTEKIPREVVIPE 180
Score = 47.5 bits (114), Expect = 9e-06
Identities = 14/81 (17%), Positives = 34/81 (41%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRR 66
++E +KE+ K + ++E K + ++ + ++E K + EE E E R
Sbjct: 40 EEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPA 99
Query: 67 RRRRRRRKKEREKKRSSRRKP 87
R + ++ +++
Sbjct: 100 EDEAARPAEAAARRPKAKKAA 120
Score = 44.5 bits (106), Expect = 7e-05
Identities = 15/102 (14%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 1 EKKKEKKKEKKKEK----KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
EK KE E K ++E +K+E K++ +++ K + ++ + +++ + E
Sbjct: 22 EKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAP 81
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRP 98
E R ++ + + ++ +A +
Sbjct: 82 AEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKK 123
Score = 44.1 bits (105), Expect = 1e-04
Identities = 17/86 (19%), Positives = 32/86 (37%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ E KE K+ +K ++ E K ++EE +KE+ K+E EE + E E
Sbjct: 5 RVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAA 64
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKP 87
+ + ++
Sbjct: 65 AAEAEEEAKAEAAAAAPAEEAAEAAA 90
Score = 44.1 bits (105), Expect = 1e-04
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK-KKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
E KE K+ +K K+ + K ++E+ +KEE K+E +++ + E EE E
Sbjct: 8 ELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAE 67
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRP 98
E + +E + ++ + +E A RP
Sbjct: 68 AEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARP 106
Score = 36.8 bits (86), Expect = 0.020
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK---KKEKKKKEEEEGEEEEEGEEEGR 63
K + E KE K+ EK K+ + K ++E+ +KEE + E EEE + E
Sbjct: 2 SKVRVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAE 61
Query: 64 RRRRRRRRRRKKEREKKRSSRRKP 87
K + +
Sbjct: 62 EAAAAEAEEEAKAEAAAAAPAEEA 85
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 51.9 bits (125), Expect = 2e-07
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 124 KICDFGLARV-------EEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIF 176
K+ DFGL++V D K + V T Y APE+++G + +S VD WS+GCI
Sbjct: 133 KLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILG-QGHSKTVDWWSLGCIL 191
Query: 177 AELL 180
E L
Sbjct: 192 YEFL 195
Score = 48.4 bits (116), Expect = 2e-06
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+L+YLHS I+HRD+KP N+L++SN LK
Sbjct: 105 ALEYLHSNGIIHRDLKPDNILIDSNGHLK 133
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 50.5 bits (121), Expect = 2e-07
Identities = 26/50 (52%), Positives = 40/50 (80%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K EK+ E ++E+KKEKKKK++ KKEKK+KK+KK+K + K KKK++++
Sbjct: 141 AKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKK 190
Score = 49.7 bits (119), Expect = 4e-07
Identities = 25/46 (54%), Positives = 38/46 (82%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
E ++E+KKEKKK+K+ +K+KKEKK K++K + K K++KKK+KKK
Sbjct: 148 EVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 49.7 bits (119), Expect = 4e-07
Identities = 24/47 (51%), Positives = 39/47 (82%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E + E++++K+K+KKKE KK++K+KK+KK+K + K +KKK+KKKK
Sbjct: 146 EAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 47.8 bits (114), Expect = 2e-06
Identities = 22/64 (34%), Positives = 45/64 (70%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + +KE + +KE + +E++KKEKKKKKE KK++++KK+KK+K E +++ ++
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Query: 61 EGRR 64
+ ++
Sbjct: 190 KKKK 193
Score = 44.7 bits (106), Expect = 2e-05
Identities = 20/64 (31%), Positives = 45/64 (70%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
E + +K+ K +K+ E +++EKK+KK+KK+ +++KKEKK K+E+ E + +++ +
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Query: 64 RRRR 67
++++
Sbjct: 190 KKKK 193
Score = 41.2 bits (97), Expect = 3e-04
Identities = 19/70 (27%), Positives = 46/70 (65%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + + EK+ K +++ + E+++KKEKKKK+E KKEKK+K++++ + E
Sbjct: 124 PPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Query: 61 EGRRRRRRRR 70
+ ++++++++
Sbjct: 184 KKKKKKKKKK 193
Score = 40.5 bits (95), Expect = 6e-04
Identities = 18/71 (25%), Positives = 47/71 (66%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+ + + EK+ K +KE + ++E+KK+++KKKE KK+++E+ +++E+ E
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Query: 64 RRRRRRRRRRK 74
+++++++++K
Sbjct: 183 SKKKKKKKKKK 193
Score = 27.8 bits (62), Expect = 8.9
Identities = 11/66 (16%), Positives = 34/66 (51%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
+ + + +K+ K +++ + EEEE +E+++ +E + ++ ++ ++ K K
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Query: 81 RSSRRK 86
++K
Sbjct: 183 SKKKKK 188
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 51.1 bits (123), Expect = 3e-07
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 34/149 (22%)
Query: 124 KICDFGLA-RVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
K+ DFGL+ ++ + M V T Y+ APE++ G + Y D+WS+G EL
Sbjct: 138 KLIDFGLSAQLSDTKARNTM---VGTPYWMAPEVING-KPYDYKADIWSLGITAIELAEG 193
Query: 183 RILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQAT 242
+ + P++ L I P L + + +
Sbjct: 194 KPPYSELPPMKALFKIATN---GPPG-------------------------LRN-PEKWS 224
Query: 243 GEAVHLLVQMLYFDPTKRISVNSALCHPY 271
E L + L +P KR + L HP+
Sbjct: 225 DEFKDFLKKCLQKNPEKRPTAEQLLKHPF 253
Score = 51.1 bits (123), Expect = 3e-07
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
K L+YLHS I+HRDIK N+L+ S+ +K
Sbjct: 109 KGLEYLHSNGIIHRDIKAANILLTSDGEVK 138
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 50.5 bits (121), Expect = 4e-07
Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 36/151 (23%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
K+ DFG+A+ V E K+ + Y+ APE++ Y A D+WS+GC E+
Sbjct: 142 KLADFGMAKQVVEFSFAKSF---KGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATG 198
Query: 183 RILFQAQSPVQQLGLITDLLGTP-TPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQA 241
+ + V + I P P+ LS +A
Sbjct: 199 KPPWSQLEGVAAVFKIGRSKELPPIPD---------------------------HLSDEA 231
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
+++ L DP+ R + L HP++
Sbjct: 232 K----DFILKCLQRDPSLRPTAAELLEHPFV 258
Score = 43.6 bits (103), Expect = 7e-05
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
L+YLH +HRDIK N+LV++N ++K
Sbjct: 113 LGLEYLHDRNTVHRDIKGANILVDTNGVVK 142
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97
family. This model family represents the major capsid
protein component of the heads (capsids) of
bacteriophage HK97, phi-105, P27, and related phage.
This model represents one of several analogous families
lacking detectable sequence similarity. The gene
encoding this component is typically located in an
operon encoding the small and large terminase subunits,
the portal protein and the prohead or maturation
protease [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 384
Score = 51.2 bits (123), Expect = 4e-07
Identities = 15/86 (17%), Positives = 35/86 (40%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ +E E KE +K + ++ + E++K + KEE K + + E +E +
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
++E + + + R
Sbjct: 62 PAASGEGGGGEEEEEEAKAEAAEFRA 87
Score = 42.3 bits (100), Expect = 3e-04
Identities = 18/84 (21%), Positives = 31/84 (36%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ EK E ++EK + KE+ K + ++ ++ + K E G EEE EE
Sbjct: 18 LTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEE 77
Query: 61 EGRRRRRRRRRRRKKEREKKRSSR 84
R R + +
Sbjct: 78 AKAEAAEFRAYLRGGDDALAEERK 101
Score = 34.3 bits (79), Expect = 0.093
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR--RRRRRRRRKKEREK 79
K+ +E + K+ ++ + EK + EEE E + +EE + R E E
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60
Query: 80 KRSSRRKP 87
K ++ +
Sbjct: 61 KPAASGEG 68
Score = 32.7 bits (75), Expect = 0.28
Identities = 9/65 (13%), Positives = 27/65 (41%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
K+ +E + K+ ++ + E+ + +++K E + +EE + + R +
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60
Query: 77 REKKR 81
+
Sbjct: 61 KPAAS 65
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 48.5 bits (116), Expect = 4e-07
Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK--KEKKKKEEEEGEEEEEG 58
++K+E+KK K +EK +K+ K +KKK+KKKKK+K KK KK KE K EE +EEEEG
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEG 128
Query: 59 EEEG 62
EE+
Sbjct: 129 EEDK 132
Score = 43.9 bits (104), Expect = 2e-05
Identities = 25/60 (41%), Positives = 44/60 (73%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
KKE + E+ ++K++EKK+K+++K KK+ K +KKK++KKK+KK K+ + EE+E +
Sbjct: 60 KKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSE 119
Score = 43.1 bits (102), Expect = 3e-05
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+K+++K KK K++KKK +KKK+KKK K+ KKEEK+ K +E + EEE E +++
Sbjct: 76 KRKDEEKTAKKRAKRQKKK--QKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQ 133
Score = 40.8 bits (96), Expect = 2e-04
Identities = 24/64 (37%), Positives = 43/64 (67%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+++K KK K++KKK+KKKK+KK K+ KK+EK+ + ++ ++EE E +++EE E
Sbjct: 79 DEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVE 138
Query: 61 EGRR 64
+
Sbjct: 139 IMEK 142
Score = 38.9 bits (91), Expect = 0.001
Identities = 24/62 (38%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + E+ ++K++EKK++ ++K KK+ K++KK++KKK KKK+ KK ++E +E + E
Sbjct: 62 ETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKK--KKKKAKKGNKKEEKEGSKSSE 119
Query: 61 EG 62
E
Sbjct: 120 ES 121
Score = 29.6 bits (67), Expect = 1.4
Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 27 EKKKKKEKKKKE-EKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
++K KKE + +E ++K+E+KK+++EE + ++R +R++KK+++KK+ +
Sbjct: 56 DEKWKKETEDEEFQQKREEKKRKDEE-----------KTAKKRAKRQKKKQKKKKKKKAK 104
Query: 86 KPFKLSEISATRPDS 100
K K E ++
Sbjct: 105 KGNKKEEKEGSKSSE 119
Score = 27.3 bits (61), Expect = 8.0
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 19/80 (23%)
Query: 17 EKKKKEKKKKE-KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
EK KKE + +E ++K++EKK+K+E+K KK R +R++++++KK
Sbjct: 57 EKWKKETEDEEFQQKREEKKRKDEEKTAKK------------------RAKRQKKKQKKK 98
Query: 76 EREKKRSSRRKPFKLSEISA 95
+++K + +K K S+
Sbjct: 99 KKKKAKKGNKKEEKEGSKSS 118
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 49.7 bits (119), Expect = 5e-07
Identities = 17/61 (27%), Positives = 37/61 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ ++ + E+ KE++KE E K+ + +KE ++ EE+ +E+ ++ +E E+E E +
Sbjct: 55 DDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKT 114
Query: 61 E 61
E
Sbjct: 115 E 115
Score = 48.2 bits (115), Expect = 1e-06
Identities = 18/62 (29%), Positives = 40/62 (64%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK + ++ + E+ KE++K+ ++K+ K + +K++E+ +E+ ++E+EE +E E E
Sbjct: 51 AKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKET 110
Query: 61 EG 62
E
Sbjct: 111 EE 112
Score = 47.8 bits (114), Expect = 2e-06
Identities = 15/61 (24%), Positives = 38/61 (62%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+++ + +E K+E+K+ ++K+ K +K++++ +EE ++E ++ +E +E EE E
Sbjct: 56 DQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTE 115
Query: 61 E 61
Sbjct: 116 S 116
Score = 47.0 bits (112), Expect = 4e-06
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ KE++KE + KE K +K+ E+ +++ +++ EE E +K+ EE+ E E E
Sbjct: 63 EEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEI 122
Query: 61 EG 62
Sbjct: 123 TN 124
Score = 46.3 bits (110), Expect = 7e-06
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++++ KK + ++ + E+ K+E+K+ + KE K EK+ E+ ++E EE +EE E
Sbjct: 47 DEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDEN 106
Query: 61 E 61
E
Sbjct: 107 E 107
Score = 44.7 bits (106), Expect = 2e-05
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ ++E KK +E + E+ K+E+K+ + KE+K +K+ EE E E EEE EE
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Query: 61 E 61
Sbjct: 102 S 102
Score = 44.0 bits (104), Expect = 4e-05
Identities = 14/61 (22%), Positives = 35/61 (57%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ +E K+E+K+ E K+ + +++ ++ E++ +EE ++ + E+E E+ E E+
Sbjct: 61 EIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEK 120
Query: 62 G 62
Sbjct: 121 E 121
Score = 44.0 bits (104), Expect = 4e-05
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K+E+K+ E K++K EK+ +E +++ E++ +E + +K+ EE+ E+
Sbjct: 64 EVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEIT 123
Query: 61 EG 62
Sbjct: 124 NP 125
Score = 42.0 bits (99), Expect = 2e-04
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKK--KKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
+ ++++ KK + ++ + +E K +KE ++K+ K + +KE ++ EEE EE+EE
Sbjct: 43 QAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEES 102
Query: 59 EEEG 62
+E
Sbjct: 103 SDEN 106
Score = 39.7 bits (93), Expect = 0.001
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ ++E KK ++ + +E K+++++ E K++K E+E+ E EEE EEE
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEE 98
Score = 38.9 bits (91), Expect = 0.002
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
E+K+ E K++K +K+ E+ ++E +++ E+ E +K+ ++K E +E
Sbjct: 68 EEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 33.9 bits (78), Expect = 0.079
Identities = 12/89 (13%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRK 74
+ +++ KK ++ + E+ KE++K+ ++E++G+ E +
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEK--------EDEE 90
Query: 75 KEREKKRSSRRKPFKLSEISATRPDSTID 103
E E + + + + + +S ++
Sbjct: 91 SEEENEEEDEESSDENEKETEEKTESNVE 119
Score = 33.6 bits (77), Expect = 0.13
Identities = 11/62 (17%), Positives = 32/62 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ ++ K +++ +E +++ +++ E+ + +K+ EEK + +KE + G E
Sbjct: 74 NSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWKPVGTE 133
Query: 61 EG 62
+
Sbjct: 134 QT 135
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 49.9 bits (120), Expect = 7e-07
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 16/56 (28%)
Query: 336 VKEEMHKFIAEQLNTSRVPLCINPQSAAFKSLKYLHSAR-ILHRDIKPGNLLVNSN 390
+ E + +IA Q+ K L YLH+ R I+HRDIKP NLL+NS
Sbjct: 96 IPEPVLAYIARQI---------------LKGLDYLHTKRHIIHRDIKPSNLLINSK 136
Score = 43.0 bits (102), Expect = 1e-04
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVV-TQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
KI DFG+++V E V T Y +PE + G YS A D+WS+G E
Sbjct: 140 KIADFGISKVLEN--TLDQCNTFVGTVTYMSPERIQG-ESYSYAADIWSLGLTLLECALG 196
Query: 183 RILFQAQSPVQQLGLITDLLGTPTPEEMRHAC 214
+ F L+ + P P
Sbjct: 197 KFPFLPPGQPSFFELMQAICDGPPPSLPAEEF 228
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 49.6 bits (119), Expect = 8e-07
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
K L+YLHS + +HRDIK GN+L+N K
Sbjct: 110 KGLEYLHSNKKIHRDIKAGNILLNEEGQAK 139
Score = 34.5 bits (80), Expect = 0.058
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVG 173
K+ DFG++ D + T ++ APE++ + + A D+WS+G
Sbjct: 139 KLADFGVSGQLT-DTMAKRNTVIGTPFWMAPEVIQEIGYNNKA-DIWSLG 186
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 50.3 bits (121), Expect = 9e-07
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
E+KK +KK++K EKK EK++ EK +KK + KK + E KK + +
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 48.8 bits (117), Expect = 3e-06
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E+KK +KK++K ++K +KE+ +K KKK E +K K + E ++ +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDP 458
Score = 46.5 bits (111), Expect = 2e-05
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E+KK +KK++K EKK + K+E +K KKK E K+ K + E + + +
Sbjct: 408 PAERKKLRKKQRKAEKKAE---KEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 43.0 bits (102), Expect = 2e-04
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++ E E+KK +KK+ K +K+ +K++ +K +KK E K+ + + E + +
Sbjct: 398 EEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVD 457
Query: 61 E 61
Sbjct: 458 P 458
Score = 41.5 bits (98), Expect = 7e-04
Identities = 14/63 (22%), Positives = 35/63 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ +++E + ++K+ +KK++K +K+ +K+E +K KKK E ++ + +
Sbjct: 392 LLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDG 451
Query: 61 EGR 63
E +
Sbjct: 452 ETK 454
Score = 39.5 bits (93), Expect = 0.002
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 3 KKEKKKEKKKEKKKEK--KKKEKKKKEKKKKKEKK-KKEEKKKEKKKKEEEEGEEEEEGE 59
K + +++E + + KK ++K++K EKK +KEE +K KK+ E ++ +G
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Query: 60 EE 61
+
Sbjct: 450 DG 451
Score = 39.1 bits (92), Expect = 0.003
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
K + +++E + E+KK ++K++K EKK EK++ E+ +++ E + +
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Score = 38.4 bits (90), Expect = 0.007
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+KK +K+E +K K+K + KK + + KK + EK
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPDPLGEK 464
Score = 30.7 bits (70), Expect = 1.6
Identities = 10/65 (15%), Positives = 32/65 (49%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
+ E +++E + + +K ++K++K E++ E+EE + +++ ++ K
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Query: 77 REKKR 81
+ +
Sbjct: 450 DGETK 454
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 50.1 bits (120), Expect = 1e-06
Identities = 22/88 (25%), Positives = 51/88 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + + + K + ++K K ++ KEK++K+ +++ +E+K+ KKK + +E E
Sbjct: 260 EGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEV 319
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPF 88
+ + R R++ ++KER +K+ +R+
Sbjct: 320 AQKEKARARKKEQRKERGEKKKLKRRKL 347
Score = 42.4 bits (100), Expect = 3e-04
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE--- 57
E +KE K EKK+++ + ++K+ +K + + + E +E EEE ++E
Sbjct: 202 EYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEG 261
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E E + R +RK + ++ + RRK
Sbjct: 262 FESEYEPINKPVRPKRKTKAQRNKEKRRK 290
Score = 31.2 bits (71), Expect = 0.85
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
E+ + +E+ ++ E + E + + + + K K ++ KE+ E E E +EE +
Sbjct: 242 LEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQ 301
Query: 64 RRRR----------------------RRRRRRKKEREKKRSSRRKPFKLS 91
+++ R++ +RK+ EKK+ RRK K
Sbjct: 302 LKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRKLGKHK 351
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 47.8 bits (114), Expect = 2e-06
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++KE K KK+K + KK KK + +KK + + E EKK E EE E
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAE 167
Score = 43.2 bits (102), Expect = 6e-05
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
KK+K + KK KK + EKK E + + +KK + +E EEEE E
Sbjct: 115 NAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEE 173
Score = 41.3 bits (97), Expect = 3e-04
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKK----EKKKKEEKKKEKKKKEEEEGEEEE 56
E K E KE+K+ K KK K K K+ KK EKK E + + +K+ E
Sbjct: 100 EAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVA 159
Query: 57 EGEE 60
E
Sbjct: 160 AEEA 163
Score = 39.0 bits (91), Expect = 0.001
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K KK KK + EKK E + + +KK + +E EEEE EE E
Sbjct: 121 LSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEA 179
Score = 36.3 bits (84), Expect = 0.012
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + E K E KE+K+ K +K K K KK KK E +K+ + E E++ E
Sbjct: 96 EAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEA 155
Query: 61 E 61
Sbjct: 156 A 156
Score = 34.8 bits (80), Expect = 0.040
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
KK + EKK + + + EKK E ++ +++E ++ EE EE E
Sbjct: 128 AKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 49.4 bits (119), Expect = 2e-06
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE---KKKKEEEEGEEEE- 56
KKE E K+E K + + EK+ +E++ + +K +K +KE +K E E EEE
Sbjct: 53 AIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEEL 112
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISA 95
E +E+ ++++ ++++E E+ + + +L IS
Sbjct: 113 EKKEKELEQKQQELEKKEEELEELIEEQLQ--ELERISG 149
Score = 42.8 bits (102), Expect = 2e-04
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE- 60
KK + K K+ E++ ++ +E KK E + K++ E K++ K + E E E E E
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKK-EAEAIKKEALLEAKEEIHKLRNEFEKELRERRNEL 84
Query: 61 ---EGRRRRRRRRRRRKKEREKKRSSR 84
E R ++ RK E +KR
Sbjct: 85 QKLEKRLLQKEENLDRKLELLEKREEE 111
Score = 39.0 bits (92), Expect = 0.004
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK----KKKEKKKKEEKKKEKKKKEEE--EGEE 54
E K ++ +E+ K +E KK+ + K++ K++ K + E +KE +++ E + E+
Sbjct: 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEK 89
Query: 55 EEEGEEEGRRRRRRRRRRRKKEREKKRSS 83
+EE R+ +R++E EKK
Sbjct: 90 RLLQKEENLDRKLELLEKREEELEKKEKE 118
Score = 32.8 bits (76), Expect = 0.31
Identities = 21/83 (25%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE------EEGEEE 55
+K + EK++E+ ++K+K+ ++K+++ +KKE++ +E +++ ++ E EE +E
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEI 158
Query: 56 --EEGEEEGRRRRRRRRRRRKKE 76
E+ EEE R + ++E
Sbjct: 159 LLEKVEEEARHEAAVLIKEIEEE 181
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal
Bck1-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Bck1-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Saccharomyces cerevisiae Bck1 and Schizosaccharomyces
pombe Mkh1, and related proteins. MAPKKKs phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Budding
yeast Bck1 is part of the cell integrity MAPK pathway,
which is activated by stresses and aggressions to the
cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and
the MAPK Slt2 make up the cascade that is important in
the maintenance of cell wall homeostasis. Fission yeast
Mkh1 is involved in MAPK cascades regulating cell
morphology, cell wall integrity, salt resistance, and
filamentous growth in response to stress.
Length = 272
Score = 48.3 bits (115), Expect = 3e-06
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 114 LVMYQATYSSKICDFGLAR----VEEPDPNKAMTQEVVTQYYRAPEILMGARH-YSAAVD 168
LV KI DFG+++ + + D N +M V ++ APE++ YSA VD
Sbjct: 140 LVDADGI--CKISDFGISKKSDDIYDNDQNMSMQGSV---FWMAPEVIHSYSQGYSAKVD 194
Query: 169 VWSVGCIFAELL-GRR 183
+WS+GC+ E+ GRR
Sbjct: 195 IWSLGCVVLEMFAGRR 210
Score = 38.2 bits (89), Expect = 0.004
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L YLHS ILHRD+K NLLV+++ I K
Sbjct: 119 EGLAYLHSKGILHRDLKADNLLVDADGICK 148
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 48.6 bits (116), Expect = 3e-06
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE--EGEEEEEGE 59
K+ ++E K +K KKE K + KKK E+KKK+KK+K+E EGE + +
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFK 94
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEIS 94
+ ++ +++ + K E ++ K +L+E S
Sbjct: 95 TPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKS 129
Score = 45.5 bits (108), Expect = 3e-05
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
E++ + K+ KKE K E KKK +KKKK+KK+K+E K E + K
Sbjct: 44 EEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGF 93
Score = 45.5 bits (108), Expect = 3e-05
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKKEKKKKEE 49
KK+KK++K E KKK +KKK+KKK+K+ K + E K K K+
Sbjct: 49 VATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
Score = 44.7 bits (106), Expect = 5e-05
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+KK++K E KK+ +K+KKKK++KK+ K + + K + KK KK K
Sbjct: 57 DKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTK 103
Score = 44.7 bits (106), Expect = 5e-05
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+K E KK+ +K+KKK+K+KKE K + + K K K+ KK +KK + + E+ +
Sbjct: 61 DKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDN 117
Score = 41.6 bits (98), Expect = 4e-04
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
E KK+ +K+KKK+K+K++ K E + K K +K KK +KK K K E+
Sbjct: 65 ESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNA 118
Score = 40.1 bits (94), Expect = 0.001
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ K+K ++KKK+KK++K+ K + + + K KK K+ KKK K K E+ +
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIA 123
Query: 61 EGRRRRR 67
E +
Sbjct: 124 ELAEKSN 130
Score = 37.0 bits (86), Expect = 0.014
Identities = 16/97 (16%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 1 EKKKEKKKEKKKE-----KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
+K K + K+ +++ + KK K+E K + KK+ E+ +++
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Query: 56 EEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
++ ++E + + + ++ KK + K +E
Sbjct: 77 KKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNE 113
Score = 29.3 bits (66), Expect = 4.1
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+ + K K +K K+ KKK K K + K + EK
Sbjct: 86 EGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNV 131
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 48.0 bits (115), Expect = 4e-06
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 11/78 (14%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEE--KKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
+ +K K +E+++++ K E++++EE +KKE+KKKEE E + + EE
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE------ 307
Query: 68 RRRRRRKKEREKKRSSRR 85
+R+ +E+E+K+ +R+
Sbjct: 308 ---QRKLEEKERKKQARK 322
Score = 46.1 bits (110), Expect = 1e-05
Identities = 16/52 (30%), Positives = 37/52 (71%), Gaps = 5/52 (9%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKK-----KEKKKKEEKKKEKKKK 47
EK + +E+++E+ +EKK+++KK++ + K +E++K EEK+++K+ +
Sbjct: 270 EKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
Score = 44.6 bits (106), Expect = 5e-05
Identities = 16/55 (29%), Positives = 41/55 (74%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+++E+K K E++++++ +EKK+++KK+++E K + +E++K EE+E +++
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320
Score = 43.8 bits (104), Expect = 7e-05
Identities = 17/45 (37%), Positives = 36/45 (80%), Gaps = 3/45 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKK---KEKKKKKEKKKKEEKKK 42
E+++E+ +EKK+EKKKE+++ + K +E++K +EK++K++ +K
Sbjct: 278 EERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, fungal Rim15-like kinases,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include Saccharomyces
cerevisiae Rim15, Schizosaccharomyces pombe cek1, and
similar fungal proteins. They contain a central
catalytic domain, which contains an insert relative to
MAST kinases. In addition, Rim15 contains a C-terminal
signal receiver (REC) domain while cek1 contains an
N-terminal PAS domain. Rim15 (or Rim15p) functions as a
regulator of meiosis. It acts as a downstream effector
of PKA and regulates entry into stationary phase (G0).
Thus, it plays a crucial role in regulating yeast
proliferation, differentiation, and aging. Cek1 may
facilitate progression of mitotic anaphase.
Length = 260
Score = 47.5 bits (113), Expect = 5e-06
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGL+R + T + Y APE ++G D WS+GC+ E L
Sbjct: 137 KLTDFGLSRNGLENKKFVGTPD-----YLAPETILGVGD-DKMSDWWSLGCVIFEFLFGY 190
Query: 184 ILFQAQSP 191
F A++P
Sbjct: 191 PPFHAETP 198
Score = 37.1 bits (86), Expect = 0.011
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
++ LH I+HRDIKP NLL++ LK
Sbjct: 110 VEDLHQRGIIHRDIKPENLLIDQTGHLK 137
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 48.0 bits (115), Expect = 5e-06
Identities = 20/49 (40%), Positives = 35/49 (71%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
E+ ++ +E K++ K KKK ++KK +K+KK+KK+K++ KK KKK +
Sbjct: 366 EELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 45.7 bits (109), Expect = 3e-05
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
++ K+ E+ KEK K KKK ++KK +K+KK++K+K+K KK +++G +
Sbjct: 366 EELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 43.8 bits (104), Expect = 1e-04
Identities = 18/53 (33%), Positives = 40/53 (75%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
++ KE+ ++ +E K++ K KKK+E+KK +++KKK+++KK+ KK++++ +
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 41.9 bits (99), Expect = 5e-04
Identities = 19/67 (28%), Positives = 41/67 (61%), Gaps = 14/67 (20%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
++ KE+ ++ +E K+K K +KK++++K +K +KKK++KKK G++
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKK--------------GKK 407
Query: 65 RRRRRRR 71
R+++ R+
Sbjct: 408 RKKKGRK 414
Score = 39.2 bits (92), Expect = 0.003
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 15/65 (23%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRK 74
K+E K+ ++ KEK K KKK+EEKK +K+KK+ ++R+++ ++RK
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKK---------------KKRKKKGKKRK 409
Query: 75 KEREK 79
K+ K
Sbjct: 410 KKGRK 414
Score = 31.9 bits (73), Expect = 0.60
Identities = 16/65 (24%), Positives = 38/65 (58%), Gaps = 13/65 (20%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
++ K+E K+ E+ K++ K KKK+EE ++ ++R++++++K++ KKR
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREE-------------KKPQKRKKKKKRKKKGKKR 408
Query: 82 SSRRK 86
+ +
Sbjct: 409 KKKGR 413
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 47.9 bits (114), Expect = 5e-06
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEK-------KKKKEKKKKEEKKKEKKKKEEEEGEE 54
+ +++ +K K+ E+ K+ ++K+K K+ E K K E + EKK KEE + +
Sbjct: 93 ELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQA 152
Query: 55 EEE----GEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
EEE E +++ +++ + E + K ++ K
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Score = 47.5 bits (113), Expect = 5e-06
Identities = 19/80 (23%), Positives = 37/80 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K+ E++ + K + +KK E KKK + + K K + + K K ++ K + E + + E
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAE 208
Query: 61 EGRRRRRRRRRRRKKEREKK 80
+ E E+K
Sbjct: 209 AAAKAEAEAAAAAAAEAERK 228
Score = 45.2 bits (107), Expect = 3e-05
Identities = 18/80 (22%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++++KK E++ E+ ++++ E+ ++++ +++ +K K+ E+ K+ EE +++ EE
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQA--EE 123
Query: 61 EGRRRRRRRRRRRKKEREKK 80
++ + + + E EKK
Sbjct: 124 AKAKQAAEAKAKAEAEAEKK 143
Score = 44.8 bits (106), Expect = 4e-05
Identities = 15/80 (18%), Positives = 45/80 (56%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K +++ +E +K++ E+ ++++ ++ +K K+ E+ K+ ++K+++ E + + E
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
Query: 62 GRRRRRRRRRRRKKEREKKR 81
+ + ++ KE KK+
Sbjct: 132 AKAKAEAEAEKKAKEEAKKQ 151
Score = 43.7 bits (103), Expect = 1e-04
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEK-----------KKKKEKKKKEEKKKEKKKKEEE 50
K+ ++K+K+ E+ K K+ E K K + KK+ E++ K + E KKK E
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAE 170
Query: 51 ---EGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
+ E E + + E + + + + K E K
Sbjct: 171 AKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKA 203
Score = 43.3 bits (102), Expect = 1e-04
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE---KKKKEEKKK---EKKKKEEEEGEE 54
++ +E +K++ E+ ++K+ +++ EK K+ K+ EEK+K E K K+ E +
Sbjct: 75 QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKA 134
Query: 55 EEEGEEEGRRRRRRRRRRRKKEREKK 80
+ E E E ++ + +++ E E K
Sbjct: 135 KAEAEAE---KKAKEEAKKQAEEEAK 157
Score = 41.7 bits (98), Expect = 4e-04
Identities = 13/79 (16%), Positives = 48/79 (60%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+++KK KKE++++KK +++ ++ +K++ ++ ++++ +++ E+ + E+ ++
Sbjct: 56 QQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAE 115
Query: 63 RRRRRRRRRRRKKEREKKR 81
++++ + K+ E K
Sbjct: 116 EKQKQAEEAKAKQAAEAKA 134
Score = 33.3 bits (76), Expect = 0.22
Identities = 14/75 (18%), Positives = 43/75 (57%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
++ + +++KK KK+++++KK +++ EE +K++ ++ + E E+ E
Sbjct: 45 PGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA 104
Query: 65 RRRRRRRRRKKEREK 79
++ + ++ +E++K
Sbjct: 105 KQAEQAAKQAEEKQK 119
Score = 28.3 bits (63), Expect = 8.2
Identities = 12/82 (14%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
++ + ++++K +K+++ +KK +++ ++ EK++ ++ ++E E+ E+
Sbjct: 45 PGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA 104
Query: 63 RR---RRRRRRRRRKKEREKKR 81
++ ++ ++K+ E K
Sbjct: 105 KQAEQAAKQAEEKQKQAEEAKA 126
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 44.9 bits (107), Expect = 6e-06
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
KE K KEK K +KK+E+KK E +K + +E+ + E +K E+E E E E
Sbjct: 11 KEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARREL 70
Query: 64 R 64
+
Sbjct: 71 K 71
Score = 44.6 bits (106), Expect = 8e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E K KEK K +KK+++KK + +K K E+K + E +K +K+ EE E E
Sbjct: 12 EVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARR 68
Score = 44.2 bits (105), Expect = 1e-05
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++K ++ + ++K K +KK+E+KK + +K + +EK + E E+ E+E E E
Sbjct: 3 EEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELE 62
Query: 61 EGRRRRRRRRRRRKKEREKK 80
RR + +K EK
Sbjct: 63 AELARRELKAEAKKMLSEKG 82
Score = 37.2 bits (87), Expect = 0.003
Identities = 14/76 (18%), Positives = 37/76 (48%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
+ ++++ +K+ + KEK K ++K+++++ + EK K E + E E E+ +
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 68 RRRRRRKKEREKKRSS 83
++E + +
Sbjct: 61 LEAELARRELKAEAKK 76
Score = 36.9 bits (86), Expect = 0.004
Identities = 18/79 (22%), Positives = 37/79 (46%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
+ E++K KE K K+K + +KK+E+KK + +K + EE+ E + +
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 71 RRRKKEREKKRSSRRKPFK 89
+ R + ++ +K
Sbjct: 61 LEAELARRELKAEAKKMLS 79
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 47.5 bits (113), Expect = 7e-06
Identities = 17/52 (32%), Positives = 35/52 (67%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
+K E K E ++ E K KE+K K+++ +K++K++ ++ KEK++K+E +
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 42.9 bits (101), Expect = 2e-04
Identities = 14/54 (25%), Positives = 33/54 (61%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+ +K E K E ++ + K K+EK K++E +KK++++ ++ K++ ++ E
Sbjct: 379 QDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 42.1 bits (99), Expect = 4e-04
Identities = 16/78 (20%), Positives = 41/78 (52%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K K+++ ++ K+ + KK + K + + ++ + K +EE+ ++EE +++
Sbjct: 357 KSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQ 416
Query: 62 GRRRRRRRRRRRKKEREK 79
+ + +R+K ER+K
Sbjct: 417 KEQADEDKEKRQKDERKK 434
Score = 41.7 bits (98), Expect = 5e-04
Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K+ + KK + + + ++ E K K+EK K+EE +K++K++ +E+ E+ ++ E
Sbjct: 373 EYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Query: 61 EG 62
+
Sbjct: 433 KK 434
Score = 41.3 bits (97), Expect = 7e-04
Identities = 17/79 (21%), Positives = 38/79 (48%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K E+ K ++++ K+ +K + KK E K + +E E +EE+ ++E
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 62 GRRRRRRRRRRRKKEREKK 80
++++ + KE+ +K
Sbjct: 411 ENEKKQKEQADEDKEKRQK 429
Score = 39.0 bits (91), Expect = 0.004
Identities = 16/65 (24%), Positives = 40/65 (61%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KE K+ + KK + K++ ++ + + K+++ K++E +KK++E+ +E++E +
Sbjct: 369 ELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQ 428
Query: 61 EGRRR 65
+ R+
Sbjct: 429 KDERK 433
Score = 36.3 bits (84), Expect = 0.026
Identities = 17/77 (22%), Positives = 38/77 (49%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
+E K K++E K+ KK ++ KK + K+E + EE E + + + ++
Sbjct: 352 LYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEE 411
Query: 70 RRRRKKEREKKRSSRRK 86
+++KE+ + +R+
Sbjct: 412 NEKKQKEQADEDKEKRQ 428
Score = 34.8 bits (80), Expect = 0.085
Identities = 16/79 (20%), Positives = 40/79 (50%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
K ++ K +K+++ K+ +K + KK + K E + EE E +E + ++
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 68 RRRRRRKKEREKKRSSRRK 86
+++K++ ++ + R+K
Sbjct: 411 ENEKKQKEQADEDKEKRQK 429
Score = 28.6 bits (64), Expect = 6.7
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Query: 18 KKKKEKKKKEK--KKKKEKKKKE----------EKKKEKKKKEEEEGEEEEEGEEEGRRR 65
K +E K K+++ KE + + K + + E E + EE+ ++
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 66 RRRRRRRRK--KEREKKRSSRRK 86
++++ + +++EK++ RK
Sbjct: 411 ENEKKQKEQADEDKEKRQKDERK 433
>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional.
Length = 467
Score = 47.3 bits (112), Expect = 8e-06
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
+ICD G D + T V T++YR+PE+++G + + D+WS+GCI EL +
Sbjct: 288 RICDLGGC----CDERHSRTAIVSTRHYRSPEVVLGL-GWMYSTDMWSMGCIIYELYTGK 342
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLR----QTRKSQSLSSLYSLSS 239
+L+ ++ L L+ LG P E C + +L Q R L ++
Sbjct: 343 LLYDTHDNLEHLHLMEKTLGR-LPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIAR 401
Query: 240 QATGEAV-------HLLVQMLYFDPTKRISVNSALCHPYL 272
V L+ +L++D KR++ HPY+
Sbjct: 402 ARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYV 441
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 46.2 bits (110), Expect = 9e-06
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E ++E++ +KKK K + K+ KKK+KK K + KKK E +
Sbjct: 77 ELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDS 136
Query: 61 EGRRRRRRRRRRRK-------KEREKKR 81
R+ R + K KERE +R
Sbjct: 137 PRRKSSRSSTVQNKEATHERLKEREIRR 164
Score = 46.2 bits (110), Expect = 9e-06
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKKK---KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E +KE ++E++ +KKK K KE KK+KKK K + + KK+ E
Sbjct: 73 EGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPT 132
Query: 58 GEEEGRRRRRRRRRRRKKE----REKKRSSRRK 86
+ RR+ R + KE R K+R RRK
Sbjct: 133 LLDSPRRKSSRSSTVQNKEATHERLKEREIRRK 165
Score = 37.7 bits (88), Expect = 0.006
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 24/102 (23%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG-- 58
E++ +KKK K + KE KK+KKK K K KK+ ++ +
Sbjct: 81 EERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRK 140
Query: 59 ------------------EEEGRRRRR----RRRRRRKKERE 78
E E RR++ R+R+ +KKE+E
Sbjct: 141 SSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKE 182
Score = 37.0 bits (86), Expect = 0.010
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK--KEEEEGEEEEEGE 59
KKK+KK + K + KKK E+ ++K + + +E E E
Sbjct: 100 KKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKE 159
Query: 60 EEGRRRRRRRRRRRKKEREKKR 81
E RR++ + + R++KE++K++
Sbjct: 160 REIRRKKIQAKARKRKEKKKEK 181
Score = 36.6 bits (85), Expect = 0.015
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR----- 64
+ ++ ++ KE++ + KK + + +K++EKKKEK+ +EE E +E E +
Sbjct: 147 VQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKELTQEERLAEAKETERINLKSLERY 206
Query: 65 -RRRRRRRRRKKEREKKRSSRRKPF 88
+ +++ K + KKR P
Sbjct: 207 EEQEEEKKKAKIQALKKRRLYEGPV 231
Score = 35.8 bits (83), Expect = 0.026
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
E E++ EK+ + +++ +KKK+ + K +E K+KKKK+ + + +++ R
Sbjct: 67 ESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSER 126
Query: 69 RRRRRKKEREKKRSSRRK 86
+R S R
Sbjct: 127 ISWAPTLLDSPRRKSSRS 144
Score = 35.0 bits (81), Expect = 0.045
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTID 103
+E E ++EEEGE+E +R R ++++R K + K +++K K + + +
Sbjct: 64 DEPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPR 119
Score = 28.1 bits (63), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTID 103
+ E+ E E + EEEG + +R R +KK+R K ++ + K + T S
Sbjct: 60 DSEDDEPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKA 115
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 47.7 bits (113), Expect = 9e-06
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K ++++ E+K ++ +KE KK EK+ KKEK++ EE +KE K+ E + EEEE E+
Sbjct: 302 ELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQ 361
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
+ + + + + +KK S R
Sbjct: 362 LEKLQEKLEQLEEELLAKKKLESER 386
Score = 46.9 bits (111), Expect = 2e-05
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ + ++++ E K+E +K+E+ + K+ +E++KEKK +EEE +E EE
Sbjct: 239 RIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEE 298
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATR 97
+ RR+ E + K S + E+ +
Sbjct: 299 LKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEK 335
Score = 45.3 bits (107), Expect = 5e-05
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++K +EK KE +KE KK EK+ K++K++ E+ +KE K+ E K++ EEE EE+ E +
Sbjct: 307 ERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQ 366
Query: 61 EGRRRRRRRRRRRKKEREKKRSSR 84
E + +KK ++ SS
Sbjct: 367 EKLEQLEEELLAKKKLESERLSSA 390
Score = 44.2 bits (104), Expect = 1e-04
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK KE +KE KK +K+ KK+KE+ ++ +K+ KE + K E ++E++++ E+ E+ E+ EE
Sbjct: 315 EKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEE 374
Query: 61 E---GRRRRRRRRRRRKKEREKKRSSRRKPFK 89
E ++ R K +E++ + + K
Sbjct: 375 ELLAKKKLESERLSSAAKLKEEELELKNEEEK 406
Score = 44.2 bits (104), Expect = 1e-04
Identities = 23/93 (24%), Positives = 51/93 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + K + +K + +++ K+ EK+ K+ +K+ +K+K+E ++ EK+ KE E E EE EE
Sbjct: 300 KSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEE 359
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
E + + + + ++E K+ + +
Sbjct: 360 EQLEKLQEKLEQLEEELLAKKKLESERLSSAAK 392
Score = 43.4 bits (102), Expect = 2e-04
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKK-------EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
EK+K+K++ KK ++ E + K ++ K K++ KK E + ++K + EEE
Sbjct: 168 EKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENL 227
Query: 54 EEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATR 97
+ + R + + E+E+ SS+++ K EI A
Sbjct: 228 LYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQV 271
Score = 43.0 bits (101), Expect = 2e-04
Identities = 21/85 (24%), Positives = 49/85 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ E+K ++ +++ K+ +K+ KK+KE+ ++ EK+ KE + K + ++EEEE E+ + +
Sbjct: 310 KVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKL 369
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
E +++ + ER + +
Sbjct: 370 EQLEEELLAKKKLESERLSSAAKLK 394
Score = 41.9 bits (98), Expect = 5e-04
Identities = 20/93 (21%), Positives = 54/93 (58%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K +++K K+ EK+ +K +KE KK++++ ++ +K+ +E + +++ +EEEE + E+ E+
Sbjct: 310 KVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKL 369
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSEIS 94
+ +++ + +++ K +L +
Sbjct: 370 EQLEEELLAKKKLESERLSSAAKLKEEELELKN 402
Score = 41.9 bits (98), Expect = 6e-04
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++ + ++++E K E K E++K + ++K ++ +KE KK EK+ K+E+E EE E E
Sbjct: 286 EEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKEL 345
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
+ +R +++ EK +
Sbjct: 346 KELEIKREAEEEEEEQLEKLQ 366
Score = 41.5 bits (97), Expect = 8e-04
Identities = 19/106 (17%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K +++ ++ +++E + +++ +KE++ + KE K++E+E+ +EEE +
Sbjct: 232 YLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKL 291
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQ 106
+ + K ER K + K SE + + + +
Sbjct: 292 LAKEEEELKSELLKLERRKVDDEEKL--KESEKELKKLEKELKKEK 335
Score = 41.1 bits (96), Expect = 0.001
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ +E E+ EK+KE+ KE++++ K+ K++ E EE EE +E
Sbjct: 936 SEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDE 995
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPF 88
+ R ++ +E ++ R K F
Sbjct: 996 LKKERLEEEKKELLREIIEETCQRFKEF 1023
Score = 41.1 bits (96), Expect = 0.001
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+K KKE+++E+K E KEK+ E+++K EK K EE+K+EK K +EEE EE +
Sbjct: 753 EEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELK 812
Query: 61 E 61
E
Sbjct: 813 E 813
Score = 40.0 bits (93), Expect = 0.002
Identities = 18/105 (17%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ K ++++ + E++ +++ + ++++ ++E+K KEE+ +E + +EE + E+ EE
Sbjct: 796 KLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 855
Query: 61 EGRRRRRRRRRR--RKKEREKKRSSRRKPFKLSEISATRPDSTID 103
E R + ++ K+ + K S +
Sbjct: 856 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEK 900
Score = 39.2 bits (91), Expect = 0.004
Identities = 22/83 (26%), Positives = 49/83 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++++ +K K +E+K+EK K ++++ +++ K++ E ++E+ E+EE +EEE EE
Sbjct: 779 EEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEE 838
Query: 61 EGRRRRRRRRRRRKKEREKKRSS 83
+ ++ + E E +R
Sbjct: 839 LALELKEEQKLEKLAEEELERLE 861
Score = 38.8 bits (90), Expect = 0.005
Identities = 18/81 (22%), Positives = 49/81 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK++E + KE K+E+K+K+ +++E K +++++ + + K ++ + + EE+ + E
Sbjct: 262 EKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 321
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
+ ++ + ++ K+E E+
Sbjct: 322 KELKKLEKELKKEKEEIEELE 342
Score = 38.0 bits (88), Expect = 0.008
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK EK+ +K+KE+ +E +KE K+ E K++ E++++E+ +K ++K E+ E E + +
Sbjct: 324 LKKLEKELKKEKEEIEE-LEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKL 382
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
E R + + ++ K +
Sbjct: 383 ESERLSSAAKLKEEELELKNEEEKE 407
Score = 37.3 bits (86), Expect = 0.016
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEK-KKKKEKKKKEEKKKEKKKKEEEEGEEE---E 56
E K ++ E+ E K+ K +EK++ EK K K K E KK E KE + + E
Sbjct: 429 ELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLE 488
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQA 107
+ ++ + +E + K I + G
Sbjct: 489 LLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAV 539
Score = 36.9 bits (85), Expect = 0.019
Identities = 24/83 (28%), Positives = 49/83 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ K ++ + ++K KEK+++E+K + KK+++E++K E KEK+ EEEE E+ + EE
Sbjct: 732 QDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEE 791
Query: 61 EGRRRRRRRRRRRKKEREKKRSS 83
E + + + + E+ +
Sbjct: 792 EKEEKLKAQEEELRALEEELKEE 814
Score = 36.1 bits (83), Expect = 0.032
Identities = 18/100 (18%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K ++ K K++ KK + + K+K E +++ K E++ +E +E+ E
Sbjct: 195 ELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEI 254
Query: 61 EGRRRRRRRR-----RRRKKEREKKRSSRRKPFKLSEISA 95
E ++ + + K+ +E+++ + + +L ++
Sbjct: 255 ESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAK 294
Score = 36.1 bits (83), Expect = 0.033
Identities = 21/83 (25%), Positives = 47/83 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK+ +K+KE+ +E +KE K+ E K++ +++++E+ +K ++K E+ ++E ++ E
Sbjct: 328 EKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERL 387
Query: 61 EGRRRRRRRRRRRKKEREKKRSS 83
+ + K E EK+
Sbjct: 388 SSAAKLKEEELELKNEEEKEAKL 410
Score = 35.7 bits (82), Expect = 0.048
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKK--KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
+KK E ++ K KE++ K +++KE K E ++EE +++KKEE + EE E
Sbjct: 379 KKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEE 438
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATR 97
E ++ + + +++ K + K SE
Sbjct: 439 SLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKE 477
Score = 35.3 bits (81), Expect = 0.054
Identities = 22/90 (24%), Positives = 43/90 (47%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK+KE+ ++++E++ ++ K++ + EEK++ K E ++ EEE +E
Sbjct: 948 EKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKE 1007
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKL 90
R +R K+ E S R K+
Sbjct: 1008 LLREIIEETCQRFKEFLELFVSINRGLNKV 1037
Score = 35.3 bits (81), Expect = 0.066
Identities = 15/95 (15%), Positives = 37/95 (38%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ E+ K ++ + K++ KK E + KEK + EE+ + E + +E
Sbjct: 186 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQE 245
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISA 95
R + +++ +++ + + E
Sbjct: 246 LLRDEQEEIESSKQELEKEEEILAQVLKENKEEEK 280
Score = 35.3 bits (81), Expect = 0.067
Identities = 23/98 (23%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+++EK + KEK+ +++++ +K + +++KE+K K ++++ + +EE + E E EE
Sbjct: 762 EEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEE 821
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR-KPFKLSEISATR 97
+ + + + + E K KL+E R
Sbjct: 822 QLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER 859
Score = 33.4 bits (76), Expect = 0.22
Identities = 12/61 (19%), Positives = 30/61 (49%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
+EK+KK+++ KK ++ E + EE + +E + E+ + + + + + E+
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Query: 81 R 81
Sbjct: 227 L 227
Score = 32.2 bits (73), Expect = 0.51
Identities = 17/80 (21%), Positives = 36/80 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ K + + +E +E +KEK++ +++++E K+ KEE E
Sbjct: 924 IAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAE 983
Query: 61 EGRRRRRRRRRRRKKEREKK 80
+ R + KKER ++
Sbjct: 984 FEEKEERYNKDELKKERLEE 1003
Score = 31.1 bits (70), Expect = 1.4
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE--EEEGEEEEEG 58
K E KKE+ +E+KKE ++ ++ ++ K+ + + K E G E
Sbjct: 991 YNKDELKKERLEEEKKELLREIIEETCQRFKEFLELFVSINRGLNKVFFYLELGGSAELR 1050
Query: 59 EE 60
E
Sbjct: 1051 LE 1052
Score = 30.7 bits (69), Expect = 1.8
Identities = 11/62 (17%), Positives = 30/62 (48%)
Query: 32 KEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLS 91
+EK+KK+E+ K+ ++ E E + EE + + + + +K + + + + +
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Query: 92 EI 93
+
Sbjct: 227 LL 228
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 4.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4
(MEKK4) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK4 activates the c-Jun
N-terminal kinase (JNK) and p38 MAPK signaling pathways
by directly activating their respective MAPKKs,
MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively
known as stress-activated MAPKs, as they are activated
in response to a variety of environmental stresses and
pro-inflammatory cytokines. MEKK4 also plays roles in
the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in
immune responses.
Length = 264
Score = 46.2 bits (110), Expect = 1e-05
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L YLHS I+HRDIKP N+ ++ N ++K
Sbjct: 110 EGLAYLHSHGIVHRDIKPANIFLDHNGVIK 139
Score = 41.9 bits (99), Expect = 3e-04
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 124 KICDFGLAR--VEEPDPNKAMTQEVV-TQYYRAPEILMGAR--HYSAAVDVWSVGCIFAE 178
K+ DFG A Q + T Y APE++ G + + A D+WS+GC+ E
Sbjct: 139 KLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLE 198
Query: 179 LL-GRR 183
+ G+R
Sbjct: 199 MATGKR 204
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 46.8 bits (111), Expect = 1e-05
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+KKKE+K ++K+ KK + +KE K K + ++ KK EKK ++ + +E E
Sbjct: 21 KKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENPE 77
Score = 43.3 bits (102), Expect = 2e-04
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + EKK ++E ++ KKKKE+K KEK+ KK K ++E K + + ++ +G + E
Sbjct: 5 ESEAEKKILTEEELER-KKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSE 63
Query: 61 EGRRRR 66
+ R+R
Sbjct: 64 KKSRKR 69
Score = 42.2 bits (99), Expect = 4e-04
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK--------KKKEEKKKEKKKKEEEEG 52
E +++KKKE+K ++K+ KK K +K+ K K + + KK EKK K+ E+E
Sbjct: 17 ELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENP 76
Query: 53 EEEEEGEEEGRRRRR 67
E+ + + +++R
Sbjct: 77 EDFIDPDTPFGQKKR 91
Score = 40.3 bits (94), Expect = 0.002
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 9 EKKKEKKKEKKKK-EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
E + EKK +++ E+KKK+++K KEK+ K+ K +K+ K + + ++ +G ++ +
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEK 64
Query: 68 RRRRRRKKERE 78
+ R+R ++
Sbjct: 65 KSRKRDVEDEN 75
Score = 38.3 bits (89), Expect = 0.007
Identities = 14/77 (18%), Positives = 42/77 (54%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
+ +KK ++E ++K+KK++K K+K+ +K K +K+ + + + ++ + ++ ++
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
Query: 71 RRRKKEREKKRSSRRKP 87
R++ ++ P
Sbjct: 66 SRKRDVEDENPEDFIDP 82
Score = 32.9 bits (75), Expect = 0.35
Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 30 KKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
+ EKK E++ E+KKK+EE+ +E+E + + ++ + + + ++ + ++ K
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
Query: 90 LS--EISATRPDSTID 103
++ P+ ID
Sbjct: 66 SRKRDVEDENPEDFID 81
Score = 31.4 bits (71), Expect = 0.99
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
E + ++K E++ +++KKK EEK KEK+ K+ + ++E + + + ++ +K E
Sbjct: 5 ESEAEKKILTEEELERKKKK-EEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSE 63
Query: 77 REKKRSSRR 85
K+S +R
Sbjct: 64 ---KKSRKR 69
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 46.6 bits (111), Expect = 2e-05
Identities = 19/45 (42%), Positives = 34/45 (75%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K + K+E ++EK++++ KE+K+ K KK+E+KKK+E +K +K K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 45.4 bits (108), Expect = 4e-05
Identities = 19/43 (44%), Positives = 34/43 (79%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
K + K+E ++EK++KE K++K+ +K KK++E+KKKE +K E+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 42.7 bits (101), Expect = 3e-04
Identities = 18/43 (41%), Positives = 33/43 (76%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
K KE+ ++EK++KE K++++ +K +K++EKKKKE E+ E+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 40.4 bits (95), Expect = 0.001
Identities = 21/78 (26%), Positives = 47/78 (60%), Gaps = 10/78 (12%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK-----EE--KKKEKKKKEEEEG- 52
E ++EK++++ +++K +K +K++++KKK+ EK +K E K++E K +E
Sbjct: 552 ELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAFDETG 611
Query: 53 --EEEEEGEEEGRRRRRR 68
+ +GEE ++ R++
Sbjct: 612 LPTHDADGEEISKKERKK 629
Score = 40.0 bits (94), Expect = 0.002
Identities = 14/42 (33%), Positives = 33/42 (78%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K +K++ +++KE+K+ K++K+ +K K++++K+KK+ E+ E
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLE 587
Score = 37.7 bits (88), Expect = 0.011
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K K+E +++KE+K+ +++K +K +++E ++++E E+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 37.3 bits (87), Expect = 0.013
Identities = 12/43 (27%), Positives = 33/43 (76%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K + K++ +++KE+K+ +++K+ K K++++K+++E E+ E+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 36.5 bits (85), Expect = 0.025
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 37/92 (40%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK------------------------------ 30
EK++++ +++K +K KK++EKKKKE +K
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAFDETGLPTH 615
Query: 31 -------KKEKKKKEEKKKEKKKKEEEEGEEE 55
K+++KK K+ +K+ K EE +
Sbjct: 616 DADGEEISKKERKKLSKEYDKQAKLHEEYLAK 647
Score = 32.7 bits (75), Expect = 0.32
Identities = 11/45 (24%), Positives = 30/45 (66%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
K +++ ++EK++KE K++K+ ++ ++ EE+++ E E + +
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 31.5 bits (72), Expect = 0.85
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 14/62 (22%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
K K++ +++KEEK+ K++K + +++EE ++KKE EK ++
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEE--------------KKKKELEKLEKAKI 591
Query: 86 KP 87
P
Sbjct: 592 PP 593
Score = 30.8 bits (70), Expect = 1.4
Identities = 13/40 (32%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KE+ ++EK++K+ K++++ ++ KK+EE++ +E E+ E+
Sbjct: 550 KEELQREKEEKEA-LKEQKRLRKLKKQEEKKKKELEKLEK 588
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 45.8 bits (109), Expect = 2e-05
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK +EK K K + K+ KK + K++ K K E+ EK E +E ++E++ EE
Sbjct: 280 EKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEE 339
Query: 61 EGRRRRRRRRRRRKK-EREKK 80
+ +++ R R +K E +
Sbjct: 340 KKKKQIERLEERIEKLEVQAT 360
Score = 39.6 bits (93), Expect = 0.002
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K + K+ KK E K+K + K +++ +K + + KEKKK++++E +++++ E
Sbjct: 288 ALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIER 347
Query: 61 EGRRRRRRRRRRRKKEREK 79
R + + KE K
Sbjct: 348 LEERIEKLEVQATDKEENK 366
Score = 28.5 bits (64), Expect = 6.6
Identities = 17/75 (22%), Positives = 39/75 (52%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
K EK EK +++ K + + K+ KK + K + + + E + E+ + ++
Sbjct: 273 KTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKK 332
Query: 70 RRRRKKEREKKRSSR 84
+ ++K+E++KK+ R
Sbjct: 333 KEKKKEEKKKKQIER 347
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal.
This domain is found to the N-terminus of bacterial
signal peptidases of the S49 family (pfam01343).
Length = 154
Score = 43.7 bits (104), Expect = 3e-05
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKK 32
E K +K EKK EK K K +K+K KKE+ K +
Sbjct: 67 ELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 42.5 bits (101), Expect = 6e-05
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK 36
KKE K +K EKK EK K + +KK+ KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 42.1 bits (100), Expect = 1e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
KKE K EK +K+ +K K K +K++ KKE+ K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 40.6 bits (96), Expect = 3e-04
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
KKE K +K ++K +K K K ++KK K+E+ K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 39.8 bits (94), Expect = 6e-04
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
KKE K +K EKK + K + K +K+K KKEE K
Sbjct: 65 KKELKAWEKAEKKAE---KAKAKAEKKKAKKEEPKP 97
Score = 39.0 bits (92), Expect = 0.001
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 20 KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
KKE K EK +KK +K K + +K+K KKEE +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 37.5 bits (88), Expect = 0.003
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK-KEKKKK 47
E+ K+ K+ + +K+ K +K EKK +K K K E+KK K+++ K
Sbjct: 49 EEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 32.5 bits (75), Expect = 0.16
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 10 KKKEKKKE----------KKKKEKKKKEKKKKKEKKK--KEEKKKEKKKKEEEEGEEEEE 57
KKK KK E K KE + KKE K K EKK EK K + E+ + ++E
Sbjct: 34 KKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKE 93
Query: 58 GEE 60
+
Sbjct: 94 EPK 96
Score = 28.3 bits (64), Expect = 4.0
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRS 82
+KKK KK + E E+ K+ K+ E +++E + + ++ +K + K
Sbjct: 33 QKKKGKKGELEITDLNEEYKDLKESLEAALLDKKE-----LKAWEKAEKKAEKAKAKAEK 87
Query: 83 SRRK 86
+ K
Sbjct: 88 KKAK 91
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 44.8 bits (106), Expect = 3e-05
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 125 ICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRRI 184
I DFGLA+ + P +T V T Y PEI+ Y DVW+ GCI ++ +
Sbjct: 155 ITDFGLAK--QKQPESKLTSVVGTILYSCPEIVKN-EPYGEKADVWAFGCILYQMCTLQP 211
Query: 185 LFQAQSPVQQLGLITDLLGTPTPEEM 210
F + + + I + + P PE M
Sbjct: 212 PFYSTNMLSLATKIVEAVYEPLPEGM 237
Score = 33.6 bits (77), Expect = 0.13
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 336 VKEEMHKFIAEQLNTSRVPLCINPQSAAFKSLKYLH-SARILHRDIKPGNLLVNSN 390
+KE+ +F E++ V + + +L+YLH RI+HRD+ P N+++ +
Sbjct: 103 LKEKKQRFTEERIWNIFVQMVL--------ALRYLHKEKRIVHRDLTPNNIMLGED 150
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 45.8 bits (109), Expect = 3e-05
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K K++ K + KEKK+ +++E + +E+ K ++ K K+ EK +KEEEE E +EE
Sbjct: 437 KKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPW 496
Query: 61 EGRRRRRRRRRRRKKEREKKRSS 83
+ +++ ++K S
Sbjct: 497 LKTTSSVGKSAKKQDSKKKSSSK 519
Score = 39.3 bits (92), Expect = 0.004
Identities = 21/80 (26%), Positives = 48/80 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++++ ++ KK +++ + +K+ + KK +K+ K E K++K+ EEEE E+EEE +
Sbjct: 408 DEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKV 467
Query: 61 EGRRRRRRRRRRRKKEREKK 80
E + +R + ++ E++
Sbjct: 468 EKVANKLLKRSEKAQKEEEE 487
Score = 35.0 bits (81), Expect = 0.074
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE-------GE 53
K +K+ KKK K K K K K K+KKKKE+ +EE +
Sbjct: 504 GKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDD 563
Query: 54 EEEEGEEE 61
EE+E +EE
Sbjct: 564 EEDEDDEE 571
Score = 34.3 bits (79), Expect = 0.12
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKK-KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
++ E +K ++ ++E K K+ KK K KK + KK++ K++ K+ +E + + E E
Sbjct: 201 ARRAELRKMRELLFREEAKAKRIKKIKSKKYHRVHKKEKLKEELKEFEELVKADPEAALE 260
Query: 60 EEGRRRRRRRRRRRKKER 77
E + RRR +ER
Sbjct: 261 E-----LEKLERRRAEER 273
Score = 33.9 bits (78), Expect = 0.18
Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKK----EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+++ ++E ++ KK ++ E +KE + KK KK+ + + KEKK+ +EEE E+E
Sbjct: 403 GEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDE 462
Query: 57 EGEEEGRRRRRRRRRRRKKEREKK 80
E + + + +R K ++E++
Sbjct: 463 EEAKVEKVANKLLKRSEKAQKEEE 486
Score = 33.9 bits (78), Expect = 0.18
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KKK K K K K + KKK+KK+K + +E K + + EE+E+ EE
Sbjct: 512 SKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDDEEDEDDEE 571
Query: 61 EGRRRRRR 68
+++
Sbjct: 572 LPFLFKQK 579
Score = 33.5 bits (77), Expect = 0.20
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ +KK K +K K K K +KKKKKEK + ++ + ++EE E++
Sbjct: 510 QDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDDEEDEDD 569
Query: 62 G 62
Sbjct: 570 E 570
Score = 33.1 bits (76), Expect = 0.28
Identities = 17/76 (22%), Positives = 44/76 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ +K ++K + +K+ + KK KK+ K + K++++ E+++ E+EE + E+
Sbjct: 413 EEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVAN 472
Query: 61 EGRRRRRRRRRRRKKE 76
+ +R + ++ ++E
Sbjct: 473 KLLKRSEKAQKEEEEE 488
Score = 32.7 bits (75), Expect = 0.35
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 5 EKKKEKKKEKKKEKKKKEK-KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
++++ ++ KK ++K + EK+ + +K KKE K + K+KKE +E EE E+ EE
Sbjct: 408 DEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKV 467
Query: 64 RRRRRRRRRRKKEREKKRSS 83
+ + +R ++ +K+
Sbjct: 468 EKVANKLLKRSEKAQKEEEE 487
Score = 32.3 bits (74), Expect = 0.47
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K K+ E +E K ++ E +KK+E + E+ + + + EEE EEE E +
Sbjct: 359 GKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKK 418
Query: 63 RRRRR 67
RR
Sbjct: 419 NVGRR 423
Score = 30.8 bits (70), Expect = 1.5
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
+KK K ++ + +++ K ++ E +KKE+ E EE E EGEEE
Sbjct: 350 NPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEES-- 407
Query: 65 RRRRRRRRRKKEREKKRSSRRK 86
+E KK RRK
Sbjct: 408 -----DEEENEEPSKKNVGRRK 424
Score = 30.4 bits (69), Expect = 1.8
Identities = 20/91 (21%), Positives = 46/91 (50%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ +E+ E++ E+ +K +K + +KE + K+ KK+ K + +E++ +EEE E+
Sbjct: 402 EGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELED 461
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
+ + + +R +K + +L E
Sbjct: 462 EEEAKVEKVANKLLKRSEKAQKEEEEEELDE 492
Score = 29.6 bits (67), Expect = 3.5
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 13/60 (21%)
Query: 1 EKKKEKKKEKKKEKK-------------KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
EKK+ ++E KE +K+KK++K+K + K + K+EK+K+KK K
Sbjct: 598 EKKEVIEEEDPKEIDLTLPGWGSWAGDGIKKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 28.9 bits (65), Expect = 5.2
Identities = 16/87 (18%), Positives = 46/87 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + E++ ++++ ++ KK ++K + +++ + ++ KKE K + +E+ E +EE E
Sbjct: 400 ELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEEL 459
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKP 87
E + + K + +++ + +
Sbjct: 460 EDEEEAKVEKVANKLLKRSEKAQKEEE 486
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 44.6 bits (106), Expect = 3e-05
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKK--------KEKKKKKEKKKKEEK-KKEKKKKEEEEG 52
KK + KK ++ +K++E KK K +++ KEKK EK KK KKK++
Sbjct: 122 KKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKGGGD 181
Query: 53 EE------EEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPF 88
E ++ + G +++ R+ + + KR ++ F
Sbjct: 182 EGDLFDFLVDDAAKGGSKKKGRKGGAARGKPNAKRKAKDAKF 223
Score = 29.6 bits (67), Expect = 2.7
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 33/118 (27%)
Query: 1 EKKKEKKKEKKK--------------------------EKKKEKKKKEKKKKEKKKKKEK 34
EK +E+ KEKK + + K+K +K + +
Sbjct: 153 EKLQERAKEKKDMLEKIKKLKKKRKGGGDEGDLFDFLVDDAAKGGSKKKGRKGGAARGKP 212
Query: 35 KKKEEKKKEK-----KKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR--SSRR 85
K + K K KK+ + E + G ++ + + KR SRR
Sbjct: 213 NAKRKAKDAKFGFGGKKRGSKSNTAESSNDLSGFSVKKMKGGGGAGKGGNKRPGKSRR 270
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii CNK2 has both
cilliary and cell cycle functions. It influences
flagellar length through promoting flagellar
disassembly, and it regulates cell size, through
influencing the size threshold at which cells commit to
mitosis.
Length = 256
Score = 44.4 bits (105), Expect = 4e-05
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
++ A KI D G+++V + N A TQ + T +Y APE+ G R YS D+WS+GC
Sbjct: 134 ILLVANDLVKIGDLGISKVLKK--NMAKTQ-IGTPHYMAPEVWKG-RPYSYKSDIWSLGC 189
Query: 175 IFAELLGRRILFQAQS 190
+ E+ F+A+S
Sbjct: 190 LLYEMATFAPPFEARS 205
Score = 42.0 bits (99), Expect = 2e-04
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L+ LH +ILHRD+K N+L+ +N ++K
Sbjct: 114 RGLQALHEQKILHRDLKSANILLVANDLVK 143
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 43.8 bits (104), Expect = 5e-05
Identities = 12/51 (23%), Positives = 30/51 (58%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K + ++ E++ +K++ +KEK + ++K K K ++++K +K E +
Sbjct: 108 AKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQH 158
Score = 42.2 bits (100), Expect = 2e-04
Identities = 9/52 (17%), Positives = 31/52 (59%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K K + ++ E++ +K++ +K++ +++ K K + +K++K + ++ +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQH 158
Score = 40.7 bits (96), Expect = 5e-04
Identities = 11/50 (22%), Positives = 30/50 (60%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K K + ++ E++ K+++ +K+K +++++ K K +KK + ++ E
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEP 156
Score = 38.8 bits (91), Expect = 0.002
Identities = 10/52 (19%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 1 EKKKEKKKEKKKE--KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
++ E++ +K++ +K++ ++E+K K K +K++K + +K + + +
Sbjct: 112 AQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Score = 38.4 bits (90), Expect = 0.003
Identities = 8/51 (15%), Positives = 30/51 (58%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E++ +K++ +++K +++++ K K +KK++ + ++ + + + E
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Score = 34.5 bits (80), Expect = 0.060
Identities = 12/69 (17%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 28 KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKP 87
+K+ +E K K + ++ +++ + E +E+ RR R+ + + +++ K R+ + +P
Sbjct: 100 RKQLEEAK---AKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEP 156
Query: 88 FKLSEISAT 96
+
Sbjct: 157 QHTPVSDIS 165
Score = 32.2 bits (74), Expect = 0.35
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+K++ + ++K K K +KK K + +K + + + + +
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQA 172
Score = 31.8 bits (73), Expect = 0.41
Identities = 8/49 (16%), Positives = 21/49 (42%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
+++K +++ K K K ++K+K +K + + E +
Sbjct: 124 AAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQA 172
Score = 29.5 bits (67), Expect = 2.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E EK+K ++E+K + K KK+K + +K E + +
Sbjct: 123 EAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTV 169
Score = 28.0 bits (63), Expect = 7.3
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+ + ++K K K +K++K + +K + + + + K K
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVK 176
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 44.7 bits (106), Expect = 5e-05
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK--KKEEEEGEEEEEGEEEGR 63
+ ++ K + E++KK + + ++KK EE + + K E E E
Sbjct: 195 RAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAA 254
Query: 64 RRRRRRRRRRKKEREKKRSSRRKP 87
R + K+ KP
Sbjct: 255 AAAEAAAARARAAEAKRTGETYKP 278
Score = 43.6 bits (103), Expect = 1e-04
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 1 EKKKEKKKE---KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E+ + + ++ K + +E+KK + E ++K +E + E E
Sbjct: 183 EQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIAS 242
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E + R + + ++
Sbjct: 243 AEAAAAKAREAAAAAEAAAARARAAEAKR 271
Score = 38.5 bits (90), Expect = 0.004
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ K + ++++K + E +KK ++ + + K E E + E
Sbjct: 197 QQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAA- 255
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKP 87
R R E ++ + +
Sbjct: 256 ---AAEAAAARARAAEAKRTGETYKPT 279
Score = 30.5 bits (69), Expect = 1.7
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 13/133 (9%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK--------KEEEEGEE 54
K K+ + ++ E +++ ++ K + +E+KK ++ +
Sbjct: 167 KATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKL 226
Query: 55 EEEGEEEGRRRR--RRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTR 112
EE E R + K RE ++ + A R T Y+ P +
Sbjct: 227 EELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGET---YKPTAPEK 283
Query: 113 QLVMYQATYSSKI 125
L+ + +
Sbjct: 284 MLISSTGGFGALR 296
Score = 29.7 bits (67), Expect = 2.7
Identities = 12/69 (17%), Positives = 31/69 (44%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++K +E++ ++ K +K+ + + E + + + +K +K+ + E
Sbjct: 48 AALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107
Query: 61 EGRRRRRRR 69
R +RRR
Sbjct: 108 VQEREQRRR 116
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 44.4 bits (105), Expect = 5e-05
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVG 173
++ T + K+CDFG+A + + +K T V T Y+ APE++ ++Y D+WS+G
Sbjct: 132 ILVTNTGNVKLCDFGVAALLNQNSSKRSTF-VGTPYWMAPEVITEGKYYDTKADIWSLG 189
Score = 37.4 bits (87), Expect = 0.008
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNS 389
+LKY+H ++HRDIK N+LV +
Sbjct: 113 ALKYIHKVGVIHRDIKAANILVTN 136
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 43.0 bits (102), Expect = 5e-05
Identities = 22/76 (28%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
KK+ KK K ++K +K K++K++EE+++ + ++ +EE + +E E+E + +R
Sbjct: 77 KKDFKKLLKWRKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKE--LAKLKRE 134
Query: 71 RRRKKEREKKRSSRRK 86
+RR+ ER++K + +
Sbjct: 135 KRRENERKQKEILKEQ 150
Score = 39.2 bits (92), Expect = 8e-04
Identities = 17/51 (33%), Positives = 35/51 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
KKEK++E+++E + E+ +E++ E +K+ K K EK++E ++K++E
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Score = 34.6 bits (80), Expect = 0.037
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK 36
E++ ++ EK+ K K +K++E ++K+K+ KE+ K
Sbjct: 117 EEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
Score = 34.2 bits (79), Expect = 0.051
Identities = 10/47 (21%), Positives = 31/47 (65%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E+++E + E+ E+++ + EK+ + K++K ++ + ++K+ K++
Sbjct: 104 EEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 33.4 bits (77), Expect = 0.076
Identities = 13/55 (23%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEK-KKKKEKKKKEEKKKEKKKKEEEEGEE 54
+ KKEK++E+++E + +E ++E+ + EK+ + K++++++ E ++ E
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Score = 33.4 bits (77), Expect = 0.093
Identities = 16/73 (21%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE-EKKKEKKKKEEEEGEEEEEGEE 60
+KK +K +K+KE++++E+ + E+ ++E+ + EK+ K K+E+ E
Sbjct: 87 RKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRR-------EN 139
Query: 61 EGRRRRRRRRRRR 73
E +++ + + +
Sbjct: 140 ERKQKEILKEQMK 152
Score = 33.0 bits (76), Expect = 0.13
Identities = 9/44 (20%), Positives = 29/44 (65%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+ +E +E++ ++ EK+ + K++++++ + K+K+ K++ K
Sbjct: 109 VEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii FA2 was discovered
in a genetic screen for deflagellation-defective
mutants. It is essential for
basal-body/centriole-associated microtubule severing,
and plays a role in cell cycle progression. No cellular
function has yet been ascribed to CNK4.
Length = 256
Score = 44.0 bits (104), Expect = 5e-05
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI D G+A++ + N A T V T YY +PE L + Y+ DVW++G + E +
Sbjct: 141 KIGDLGVAKLLSDNTNFANTI-VGTPYYLSPE-LCEDKPYNEKSDVWALGVVLYECCTGK 198
Query: 184 ILFQAQS 190
F A +
Sbjct: 199 HPFDANN 205
Score = 33.3 bits (76), Expect = 0.16
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 367 LKYLHSARILHRDIKPGNLLVN 388
L +LHS +ILHRDIK NL ++
Sbjct: 114 LAHLHSKKILHRDIKSLNLFLD 135
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 44.8 bits (106), Expect = 5e-05
Identities = 21/57 (36%), Positives = 43/57 (75%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E +KE E+++E+K+EKK++E+K +K+++ ++++++E+KK+K KK +E E E
Sbjct: 30 EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 39.0 bits (91), Expect = 0.004
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 7/59 (11%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKK-------EKKKKEEKKKEKKKKEEEEGEEEE 56
EK+ EK+ ++E+++KE+KK+E++K E+++KEEKKK+ KK +E E E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 38.2 bits (89), Expect = 0.007
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
++++EK +K++E +E++K+EKKKK KK K+ + E K K
Sbjct: 48 KEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 37.4 bits (87), Expect = 0.011
Identities = 19/58 (32%), Positives = 41/58 (70%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K+ +K+ +E+++EK++K++++++ K+E+ +EE+K+EKKKK ++ E E E
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 35.9 bits (83), Expect = 0.036
Identities = 18/53 (33%), Positives = 37/53 (69%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKERE 78
KE ++E+++KEEKK+E++K ++E E +EE E+E ++++ ++ + E E
Sbjct: 33 KEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Score = 35.9 bits (83), Expect = 0.037
Identities = 16/48 (33%), Positives = 37/48 (77%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
KE +K+ +++E++K+E+K++E+K ++EE +EEE +EE +++ ++
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKK 76
Score = 35.5 bits (82), Expect = 0.044
Identities = 15/46 (32%), Positives = 32/46 (69%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
EKK+E++K KE++ ++++++++KK+K KK ++ E + K K
Sbjct: 46 EKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 34.7 bits (80), Expect = 0.083
Identities = 15/47 (31%), Positives = 32/47 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E+KKE++++ ++++ +++EK++K+KK KK K+ E + K K
Sbjct: 45 EEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 34.4 bits (79), Expect = 0.11
Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
KE +K+ ++E+++K+EKK++EEK +K EEE + EEE ++++ ++ ++
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDK--------EEEVDEEEEKEEKKKKTKKVKET 80
Query: 76 EREKKRSSRRKP 87
E + ++ KP
Sbjct: 81 TTEWELLNKTKP 92
Score = 34.4 bits (79), Expect = 0.11
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
EK+ +KE +EE++++++KKEEEE ++E E + + ++++ KK +E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 44.7 bits (106), Expect = 6e-05
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE------EKKKEKKKKEEEEGEE 54
+K K + ++ KK KK K K ++ E K+ + EK + ++ E
Sbjct: 356 DKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEI 415
Query: 55 EEEGEEEGRRRRRRRRRRRKKEREKKR 81
EE EEG + ++++R++K+ EK R
Sbjct: 416 REELIEEGLLKSKKKKRKKKEWFEKFR 442
Score = 34.7 bits (80), Expect = 0.081
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+++K K+ + +KK EK+ KK + K E+++ E ++ E+ E ++GE
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGE 324
Score = 33.1 bits (76), Expect = 0.23
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+++K K+ + EKK +KE KK E K ++++ + EE + EE ++G
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKG 323
Score = 31.6 bits (72), Expect = 0.69
Identities = 14/49 (28%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE--EEEGE 53
+++K K+ E +KK +K+ +K + K +K+++E ++ +K E ++GE
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGE 324
Score = 30.4 bits (69), Expect = 1.7
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKK-KKEEEEGEEEEEGEEEGRRR 65
EK +++K K+ + ++K +KE KK E K +K+E+E EE E+ EE R++
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 30.4 bits (69), Expect = 2.1
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+K ++ + K+ + +KK EK+ K+ + K EK++ E ++ EK +E +
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQ 321
Score = 30.1 bits (68), Expect = 2.6
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 20 KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE--GEEEEEGEEEGRRRRRRRRRRRKKER 77
++ K + +K K + + KK KK K + + E +E + K E
Sbjct: 349 EEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEG 408
Query: 78 EK 79
+K
Sbjct: 409 KK 410
Score = 29.7 bits (67), Expect = 3.2
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E+ K K+ + EKK EK+ K+ + K +K++ E ++ E+ +E ++K
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 29.3 bits (66), Expect = 4.1
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEK-KKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++K E+ K ++ E +KK EK KK E K EK++ E EE E+ E +
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQ 321
Score = 28.5 bits (64), Expect = 8.0
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
++K + K K+ + EKK ++E KK + K E++E E EE + R++
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 44.0 bits (104), Expect = 6e-05
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ K + + + K KEK K EKK KK K K + K K K K + + ++ +
Sbjct: 65 EQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKT 124
Query: 61 E 61
Sbjct: 125 A 125
Score = 40.2 bits (94), Expect = 8e-04
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKK-KEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ E E K KEK K EKK K+ K K K K K + K K + K ++ + +
Sbjct: 70 PTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAK 127
Score = 40.2 bits (94), Expect = 9e-04
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+ K++ K EKK +K K + K K K K K K + + KK K +
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 38.6 bits (90), Expect = 0.003
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
+ K EKK +K K K K K K + K K + K K+ K K
Sbjct: 87 KPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 38.2 bits (89), Expect = 0.004
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+ K++ K EKK +K K K K + K K K K + K KK K K
Sbjct: 83 KPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 38.2 bits (89), Expect = 0.004
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
E E K KEK K +KK +K K + K K + K K + + + KK + +
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 37.8 bits (88), Expect = 0.005
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ + K ++K + +KK KK K K K K K K + K + K KK + +
Sbjct: 73 PETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 37.1 bits (86), Expect = 0.011
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKK--KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
E +E+ K + + + K K+K + +KK +K K + K K K K + + + ++
Sbjct: 61 EPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Query: 59 EEE 61
+
Sbjct: 121 PSK 123
Score = 35.1 bits (81), Expect = 0.043
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E+ + + + +++ K + + + K KEK K E+K K+ K K + +
Sbjct: 54 EEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPK 104
Score = 32.8 bits (75), Expect = 0.21
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
++ + + E +E+ K + E + K ++K K EKK +K K + +
Sbjct: 53 TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKP 103
Score = 31.7 bits (72), Expect = 0.48
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+ ++ + + E +E+ K + + + K KE+ K EKK K+
Sbjct: 49 LEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKK 96
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. One exception is EphA4, which also
binds ephrins-B2/B3. EphRs contain an ephrin-binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. EphARs and ephrin-A
ligands are expressed in multiple areas of the
developing brain, especially in the retina and tectum.
They are part of a system controlling retinotectal
mapping.
Length = 267
Score = 43.7 bits (103), Expect = 7e-05
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 104 GYQARQPTRQLVMYQATYSSKICDFGLARVEEPDPNKAMTQE--VVTQYYRAPEILMGAR 161
GY R + ++ + K+ DFGL+RV E DP A T + + APE + R
Sbjct: 126 GYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAI-AYR 184
Query: 162 HYSAAVDVWSVGCIFAELL 180
+++A DVWS G + E++
Sbjct: 185 KFTSASDVWSYGIVMWEVM 203
Score = 30.6 bits (69), Expect = 1.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+KYL +HRD+ N+LVNSN + K
Sbjct: 119 MKYLSDMGYVHRDLAARNILVNSNLVCK 146
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 44.0 bits (104), Expect = 7e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 361 SAAFKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ K L YLHS +I+HRDIKP N+L+ +K
Sbjct: 112 ESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVK 145
Score = 40.5 bits (95), Expect = 8e-04
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+CDFG++ E + A T T +Y APE + G + YS DVWS+G E+ R
Sbjct: 145 KLCDFGVS--GELVNSLAGTF-TGTSFYMAPERIQG-KPYSITSDVWSLGLTLLEVAQNR 200
Query: 184 ILFQAQSPVQQLGLITDLL 202
F + LG I +LL
Sbjct: 201 FPFPPEGE-PPLGPI-ELL 217
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 44.1 bits (104), Expect = 7e-05
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 20/120 (16%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKK------------------KEKKKKKEKKKKEE--KK 41
+++ + +EK+KEKK + + + KK + +K + + KK
Sbjct: 289 EQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKK 348
Query: 42 KEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDST 101
+ +K+ E E E +E R R RR + KK+ S
Sbjct: 349 EIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENEESKG 408
Score = 31.7 bits (72), Expect = 0.61
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE------EEGEEEEEGEEEG 62
E+K E K+ +++ + ++K+K+KK ++ + E E E
Sbjct: 274 ERKYPLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIK 333
Query: 63 RRRRRRRRR---RRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQ 113
+ R + R+K+ +K+R++ R EI+ + R
Sbjct: 334 KTRTAEKNEAKARKKEIAQKRRAAER------EINREARQERAAAMARARARRA 381
Score = 29.4 bits (66), Expect = 3.8
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKK-EKKKKEKKKKKEKKK----KEEKKKEKKKKEEEEGEEE 55
+K++ ++E +E ++E+ + + + K KKK + + EE +G
Sbjct: 352 QKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENEESKGSPP 411
Query: 56 EEGEEEGRRRRRRR 69
+ R
Sbjct: 412 QVEATTTAEPNREP 425
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 42.4 bits (100), Expect = 8e-05
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+K+ K+ ++KE K KK+K++KK++K +K KKK K + K+ + ++ E
Sbjct: 98 EQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEG 157
Query: 61 E 61
+
Sbjct: 158 K 158
Score = 42.4 bits (100), Expect = 8e-05
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK++++ ++ +EK+ K KKEKK+K++KK EK K++ K K ++ ++ +E
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 61 EG 62
EG
Sbjct: 156 EG 157
Score = 40.1 bits (94), Expect = 5e-04
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E+ ++++KE KE ++KE K +K+KK++K+KK +K KKK + ++ ++
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTT 152
Query: 65 R 65
+
Sbjct: 153 K 153
Score = 35.1 bits (81), Expect = 0.023
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
EK++KE K+ ++K+ K KKE+K+K++KK E+ +++ + ++ ++ KKE
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 77 REK 79
K
Sbjct: 156 EGK 158
Score = 34.4 bits (79), Expect = 0.046
Identities = 15/66 (22%), Positives = 41/66 (62%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRR 72
E+ ++++K+ K+ E+K+ + KK++++KKEKK E+ ++ + + ++ ++
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTT 152
Query: 73 RKKERE 78
+K+E +
Sbjct: 153 KKEEGK 158
Score = 34.0 bits (78), Expect = 0.060
Identities = 16/64 (25%), Positives = 38/64 (59%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
+K++++ KE ++K+ K K+EKK++K+KK E+ +++ + ++ ++ K+
Sbjct: 95 SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKK 154
Query: 77 REKK 80
E K
Sbjct: 155 EEGK 158
Score = 33.2 bits (76), Expect = 0.11
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
EK++KE K+ E+K+ + KKEKK+K+E++ E+ ++ + + ++ KK KK
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 82 S 82
Sbjct: 156 E 156
Score = 29.3 bits (66), Expect = 2.2
Identities = 18/97 (18%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 6 KKKEKKKEKKKEKKKKEKK---------------KKEKKKKKEKKKKEEKKKEKKKKEEE 50
KK K+ + KK ++ +K++KE K+ E+K+ K K+E+
Sbjct: 59 DKKPKRLGRFPGFTNSYKKAYVTLAEGYSINLFPEESEKEQKEVSKETEEKEAIKAKKEK 118
Query: 51 EGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKP 87
+ ++E++ E+ +++ + + ++ K+++ +K
Sbjct: 119 KEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 43.4 bits (103), Expect = 8e-05
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
K+ DFG A+ + K T T Y APEI++ + Y +VD WS+G + ELL
Sbjct: 133 KLVDFGFAKKLK-SGQKTWTF-CGTPEYVAPEIILN-KGYDFSVDYWSLGILLYELL 186
Score = 38.4 bits (90), Expect = 0.003
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+YLH+ I++RD+KP NLL++SN +K
Sbjct: 106 FEYLHNRGIIYRDLKPENLLLDSNGYVK 133
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK5, also referred to as MEK5, is a
dual-specificity PK that phosphorylates its downstream
target, extracellular signal-regulated kinase 5 (ERK5),
on specific threonine and tyrosine residues. MKK5 is
activated by MEKK2 and MEKK3 in response to mitogenic
and stress stimuli. The ERK5 cascade promotes cell
proliferation, differentiation, neuronal survival, and
neuroprotection. This cascade plays an essential role in
heart development. Mice deficient in either ERK5 or MKK5
die around embryonic day 10 due to cardiovascular
defects including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 43.3 bits (102), Expect = 1e-04
Identities = 32/84 (38%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL-LGR 182
K+CDFG++ N V T Y APE + G Y DVWS+G F EL LGR
Sbjct: 135 KLCDFGVST---QLVNSIAKTYVGTNAYMAPERISG-EQYGIHSDVWSLGISFMELALGR 190
Query: 183 RILFQAQS------PVQQLGLITD 200
Q Q P+Q L I D
Sbjct: 191 FPYPQIQKNQGSLMPLQLLQCIVD 214
Score = 42.6 bits (100), Expect = 2e-04
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 362 AAFKSLKYLHSARILHRDIKPGNLLVNS 389
A K L YL S +ILHRD+KP N+LVN+
Sbjct: 103 AVVKGLTYLWSLKILHRDVKPSNMLVNT 130
>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and
Dbf2p-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), ROCK- and NDR-like
subfamily, fungal Sid2p- and Dbf2p-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sid2p- and
Dbf2p-like group is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This group contains fungal kinases including
Schizosaccharomyces pombe Sid2p and Saccharomyces
cerevisiae Dbf2p. Group members show similarity to NDR
kinases in that they contain an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Sid2p plays a
crucial role in the septum initiation network (SIN) and
in the initiation of cytokinesis. Dbf2p is important in
regulating the mitotic exit network (MEN) and in
cytokinesis.
Length = 333
Score = 43.5 bits (103), Expect = 1e-04
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 23/66 (34%)
Query: 124 KICDFGLAR---------VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
K+ DFGL++ V PD Y APE+L G + Y VD WS+GC
Sbjct: 141 KLTDFGLSKGIVTYANSVVGSPD-------------YMAPEVLRG-KGYDFTVDYWSLGC 186
Query: 175 IFAELL 180
+ E L
Sbjct: 187 MLYEFL 192
Score = 28.9 bits (65), Expect = 4.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNS 389
F+++ LH +HRD+KP N L+++
Sbjct: 111 FEAVDALHELGYIHRDLKPENFLIDA 136
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 42.8 bits (101), Expect = 1e-04
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 1 EKKKEKKKEKKKEKKKEKKKK--EKKKKEKKKKKEKKKK----EEKKKEKKKKEEEEGEE 54
KK KK K K+K E+ EK EKK K E+ +E +K EEEE EE
Sbjct: 123 NKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEE 182
Query: 55 EEEGEEEG 62
EEE E+
Sbjct: 183 EEEDEDFD 190
Score = 37.0 bits (86), Expect = 0.009
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
KK KK K K+K +E++ EK EKK ++ + E+ + E+E++ EEE
Sbjct: 121 GINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEE 180
Score = 34.3 bits (79), Expect = 0.066
Identities = 12/51 (23%), Positives = 33/51 (64%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
E EK +KK K+ + + +E +K EE+++E+++++E+ +++++ +
Sbjct: 147 EDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 32.8 bits (75), Expect = 0.21
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK-------KEEEEGEE 54
+K +K K K K +++++ +K ++K K EE+E +E
Sbjct: 117 YSVMGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDE 176
Query: 55 EEEGEEE 61
EEE EEE
Sbjct: 177 EEEEEEE 183
Score = 32.8 bits (75), Expect = 0.23
Identities = 15/61 (24%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+E++ +K EKK KE + ++ ++ EK ++EE+++E EE+E ++++ +++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEE----EEDEDFDDDDDDDD 197
Query: 62 G 62
Sbjct: 198 D 198
Score = 29.0 bits (65), Expect = 4.1
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+K +K K K++ E+++ ++K +K+ +E E E+ EE+
Sbjct: 117 YSVMGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDE 173
Score = 28.6 bits (64), Expect = 5.5
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK-KKKEEEEGEEEEEGEEEGRR 64
K+ KK K K+K ++EE EK E++ E E E +E
Sbjct: 122 INKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDE 173
>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 7. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK7
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs
to the visual group of GRKs. It is primarily found in
the retina and plays a role in the regulation of opsin
light receptors. GRK7 is located in retinal cone outer
segments and plays an important role in regulating
photoresponse of the cones.
Length = 277
Score = 43.0 bits (101), Expect = 1e-04
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
++ D GLA VE D K +TQ T Y APEIL YS VD +++GC E++ R
Sbjct: 135 RLSDLGLA-VELKD-GKTITQRAGTNGYMAPEILK-EEPYSYPVDWFAMGCSIYEMVAGR 191
Query: 184 ILFQ 187
F+
Sbjct: 192 TPFK 195
Score = 28.4 bits (63), Expect = 7.0
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 369 YLHSARILHRDIKPGNLLV--NSNCIL 393
+LHS I++RD+KP N+L+ NC L
Sbjct: 110 HLHSMDIVYRDMKPENVLLDDQGNCRL 136
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 44.1 bits (104), Expect = 1e-04
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
K++ K E+ +EK + + + KK ++ KK KK KK E E EE G
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYG 1225
Score = 38.3 bits (89), Expect = 0.007
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 5/169 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ ++ ++K ++ + E +K ++ KK KK +K E + EE G E E
Sbjct: 1174 KAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETEN 1233
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDG---YQARQPTRQLVMY 117
+ + R KK+ + + ++ ++ +D A+ V
Sbjct: 1234 VAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEE--TVKA 1291
Query: 118 QATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAA 166
+ LA V + + + A + AA
Sbjct: 1292 VPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAA 1340
Score = 34.1 bits (78), Expect = 0.15
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE-KKKEKKKKEEEEGEEEEEGE 59
EK+ +K ++ + ++ ++K ++ + KK + KK KK ++ E E E
Sbjct: 1162 EKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTE 1221
Query: 60 E 60
E
Sbjct: 1222 E 1222
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nek6/7 subfamily is part of a family of 11 different
Neks (Nek1-11) that are involved in cell cycle control.
The Nek family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks,
consisting only of the catalytic domain and a very short
N-terminal extension. They show distinct expression
patterns and both appear to be downstream substrates of
Nek9. They are required for mitotic spindle formation
and cytokinesis. They may also be regulators of the p70
ribosomal S6 kinase.
Length = 267
Score = 42.8 bits (101), Expect = 1e-04
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+L+++HS RI+HRDIKP N+ + + ++K
Sbjct: 118 ALEHMHSKRIMHRDIKPANVFITATGVVK 146
Score = 36.6 bits (85), Expect = 0.015
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
V AT K+ D GL R A + V T YY +PE + Y+ D+WS+GC
Sbjct: 137 VFITATGVVKLGDLGLGRFFSSKTTAAHSL-VGTPYYMSPERIHEN-GYNFKSDIWSLGC 194
Query: 175 IFAEL 179
+ E+
Sbjct: 195 LLYEM 199
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity
Protein Kinase, Mitogen-Activated Protein Kinase Kinase.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK or MAP2K), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK or
MAP3K). MAPKKs are dual-specificity PKs that
phosphorylate their downstream targets, MAPKs, at
specific threonine and tyrosine residues. There are
three MAPK subfamilies: extracellular signal-regulated
kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In
mammalian cells, there are seven MAPKKs (named MKK1-7)
and 20 MAPKKKs. Each MAPK subfamily can be activated by
at least two cognate MAPKKs and by multiple MAPKKKs.
Length = 265
Score = 42.7 bits (101), Expect = 1e-04
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 362 AAFKSLKYLHSAR-ILHRDIKPGNLLVNS 389
A K L YLH I+HRD+KP N+LVNS
Sbjct: 108 AVLKGLTYLHEKHKIIHRDVKPSNILVNS 136
Score = 40.8 bits (96), Expect = 6e-04
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL-LGR 182
K+CDFG++ A T V T Y APE + G YS D+WS+G EL GR
Sbjct: 141 KLCDFGVSGQLVNS--LAKT-FVGTSSYMAPERIQGN-DYSVKSDIWSLGLSLIELATGR 196
Query: 183 RILFQAQSPVQQLGLITDLL 202
F I +LL
Sbjct: 197 ---FPYPPENDPPDGIFELL 213
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 42.9 bits (101), Expect = 1e-04
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 120 TYSS--KICDFG----LARVEEPDPNKAMTQEVVTQYYRAPEIL-MGARHYSAAVDVWSV 172
TYS KI DFG LA + N T Y APE++ G R Y A D+WS+
Sbjct: 143 TYSGVVKISDFGTSKRLAGI-----NPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSL 197
Query: 173 GCIFAELLGRRILF----QAQSPVQQLGLITDLLGTPTPEEMRHAC 214
GC E+ + F + Q+ + ++G+ PE +
Sbjct: 198 GCTIVEMATGKPPFIELGEPQAAMFKVGMFKI--HPEIPESLSAEA 241
Score = 39.8 bits (93), Expect = 0.001
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 354 PLCINPQSAAFKS------LKYLHSARILHRDIKPGNLLVNS 389
PL N Q+ F + LKYLH +I+HRDIK N+LVN+
Sbjct: 102 PLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNT 143
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
splicing factor. These splicing factors consist of an
N-terminal arginine-rich low complexity domain followed
by three tandem RNA recognition motifs (pfam00076). The
well-characterized members of this family are auxilliary
components of the U2 small nuclear ribonuclearprotein
splicing factor (U2AF). These proteins are closely
related to the CC1-like subfamily of splicing factors
(TIGR01622). Members of this subfamily are found in
plants, metazoa and fungi.
Length = 509
Score = 43.3 bits (102), Expect = 1e-04
Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
+ +E +E++K + +++ ++ +++ ++ + + + E RRR
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 70 RRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQ 113
R R R SR +P + S S + + R P+ Q
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSR-SVRSIEQHRRRLRDRSPSNQ 103
Score = 41.4 bits (97), Expect = 6e-04
Identities = 15/117 (12%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE-------EEGE 53
+++ ++++EK + + +++ + +++ + + + + + ++ +++ +
Sbjct: 2 DEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSR 61
Query: 54 EEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQP 110
RR R R RRR + RR+ S + R D +P
Sbjct: 62 SPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIKP 118
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 43.3 bits (102), Expect = 2e-04
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E K +K K KKK KK K+K+ KE K ++++ E + + K ++ E+ ++EE E+
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDS 199
Score = 43.3 bits (102), Expect = 2e-04
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ + KK K K+K K+ KKKE K+ K +E+ + E++ K ++ E++ +EEEE +
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDS 201
Score = 41.0 bits (96), Expect = 8e-04
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+K K KKK KK +KK+ K+ +K +E+ + +++ K EE ++ EEEE + E+
Sbjct: 147 KKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 39.8 bits (93), Expect = 0.002
Identities = 21/60 (35%), Positives = 39/60 (65%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ K KK + KK+ KK KKK+ K+ +K ++E + ++E K E+ +++ + EEEE+ + E
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSE 202
Score = 37.9 bits (88), Expect = 0.008
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+ K +K K +KK KK KKK+ ++ +K +EE E E+E + EE
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESA 187
Score = 37.9 bits (88), Expect = 0.008
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
E K +K K +KK K+ KKK+ K+ ++ +E+ + E+E EE ++
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSD 192
Score = 37.1 bits (86), Expect = 0.012
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+ + KK + KKK KK KK++ K+ K ++++ E E+ + EE E+
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDS 191
Score = 34.0 bits (78), Expect = 0.14
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK----EEEEGEEEEEG 58
K+ K K + ++ ++ +KK K KK++E+++KE++ + E + + E
Sbjct: 300 VKKPVKRKNRRGQRARQAIWEKKYGSGAKHVKKEREKEQKEREGRQSEWEARQAKREGGD 359
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLS 91
+ GR R ++K KR ++KP K S
Sbjct: 360 AKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPS 392
Score = 34.0 bits (78), Expect = 0.14
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
+ K +K K K+K KK +KK+ K+ ++++ EE E +E
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSE 184
Score = 30.6 bits (69), Expect = 1.7
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG------RRRRRRRR 70
++ KK K+KK E+E +++E+ + + +R+ RR +
Sbjct: 253 SEESSPPSKKPKEKKTSSTFLPSLMGGYFSGSEDEDDDDEDIDPDQVVKKPVKRKNRRGQ 312
Query: 71 RRRKKEREKKRSSRRK-PFKLSEISATRPDSTIDGYQARQPTRQL 114
R R+ EKK S K K E + ++ARQ R+
Sbjct: 313 RARQAIWEKKYGSGAKHVKKEREKEQKEREGRQSEWEARQAKREG 357
Score = 29.0 bits (65), Expect = 4.2
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E E K + K KK + KKK +K K+K+ KE + ++EEE E E
Sbjct: 130 ESIMEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESE 178
Score = 28.3 bits (63), Expect = 8.4
Identities = 17/84 (20%), Positives = 40/84 (47%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
++ + + + KK K+K ++ ++ ++ EKK K ++ E+E+ E EGR+
Sbjct: 286 DEDDDDEDIDPDQVVKKPVKRKNRRGQRARQAIWEKKYGSGAKHVKKEREKEQKEREGRQ 345
Query: 65 RRRRRRRRRKKEREKKRSSRRKPF 88
R+ +++ + K +P
Sbjct: 346 SEWEARQAKREGGDAKAGRAAEPT 369
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 42.5 bits (101), Expect = 2e-04
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFGL+R D + + + APE L +++ DVWS G + E+
Sbjct: 143 KISDFGLSRDLYDDDYYKVKGGKLPIRWMAPESLK-EGKFTSKSDVWSFGVLLWEIF 198
Score = 37.1 bits (87), Expect = 0.009
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
++YL S +HRD+ N LV N ++K
Sbjct: 116 MEYLESKNFIHRDLAARNCLVGENLVVK 143
>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The GRK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. GRKs phosphorylate and
regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological
functions. Phosphorylated GPCRs bind to arrestins, which
prevents further G protein signaling despite the
presence of activating ligand. GRKs contain a central
catalytic domain, flanked by N- and C-terminal
extensions. The N-terminus contains an RGS (regulator of
G protein signaling) homology (RH) domain and several
motifs. The C-terminus diverges among different groups
of GRKs. There are seven types of GRKs, named GRK1 to
GRK7. They are subdivided into three main groups: visual
(GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and
GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is
widespread while GRK1/4/7 show a limited tissue
distribution. The substrate spectrum of the widely
expressed GRKs partially overlaps. GRKs play important
roles in the cardiovascular, immune, respiratory,
skeletal, and nervous systems.
Length = 277
Score = 42.9 bits (101), Expect = 2e-04
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
+I D GLA VE K + T Y APE+L G Y +VD +++GC E++ R
Sbjct: 135 RISDLGLA-VELKG-GKKIKGRAGTPGYMAPEVLQGEV-YDFSVDWFALGCTLYEMIAGR 191
Query: 184 ILFQA 188
F+
Sbjct: 192 SPFRQ 196
Score = 28.6 bits (64), Expect = 6.0
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 367 LKYLHSARILHRDIKPGNLLVN 388
L++LH RI++RD+KP N+L++
Sbjct: 108 LEHLHQRRIVYRDLKPENVLLD 129
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 42.6 bits (101), Expect = 2e-04
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
K+ DFG+A + D +K V T Y+ APE++ + S A D+WS+GC ELL
Sbjct: 139 KLADFGVA-TKLNDVSKDDASVVGTPYWMAPEVIEMSGA-STASDIWSLGCTVIELL 193
Score = 37.2 bits (87), Expect = 0.008
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSN 390
+ L YLH ++HRDIK N+L +
Sbjct: 110 QGLAYLHEQGVIHRDIKAANILTTKD 135
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 5. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. The specific function of Nek5
is unknown.
Length = 257
Score = 42.6 bits (100), Expect = 2e-04
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 33/150 (22%)
Query: 123 SKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
+K+ DFG+AR A T V T YY +PEI R Y+ D+WS+GC+ EL
Sbjct: 141 AKLGDFGIARQLNDSMELAYTC-VGTPYYLSPEICQN-RPYNNKTDIWSLGCVLYELCTL 198
Query: 183 RILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQAT 242
+ F+ + + QL L C G +S +
Sbjct: 199 KHPFEGNN-LHQLVL--------------KICQG----------------YFAPISPNFS 227
Query: 243 GEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
+ L+ Q+ P R S+ S L P+L
Sbjct: 228 RDLRSLISQLFKVSPRDRPSITSILKRPFL 257
Score = 33.4 bits (76), Expect = 0.17
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSN 390
LK++H +ILHRDIK N+ ++ N
Sbjct: 114 LKHIHDRKILHRDIKSQNIFLSKN 137
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/55 (30%), Positives = 40/55 (72%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
+++++++KE+K+EK+KE K +K+E++K+ E+ +K + K + ++E+ +EE
Sbjct: 21 KEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDEE 75
Score = 40.8 bits (96), Expect = 2e-04
Identities = 22/60 (36%), Positives = 42/60 (70%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK++EK++EK+++++KE+K+KE K +K++ +K+ EE +K K K ++E+ EE
Sbjct: 16 EKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDEE 75
Score = 38.8 bits (91), Expect = 9e-04
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
E+K+E+K+ +K+EK++KE+K+KE K +K++ EK+ E+ +K + + +E+
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYD 73
Query: 64 RRRRRRRRRR-------KKEREKKRSSRRKPFK 89
+ + R +K++EK + +K
Sbjct: 74 EELKEQERWDDPMAQFLRKKKEKTDKKGKPLYK 106
Score = 36.9 bits (86), Expect = 0.004
Identities = 15/76 (19%), Positives = 45/76 (59%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K + + ++++++++++KE+K+++++K+KE K +K+E++K+ EE + + +
Sbjct: 7 KSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARY 66
Query: 63 RRRRRRRRRRRKKERE 78
+++ER
Sbjct: 67 ADDEDYDEELKEQERW 82
Score = 31.5 bits (72), Expect = 0.32
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
++K + +EK+++KE++K+E+++KE+K+KE +G ++ R +R +
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLV---------QKEEREKRLEEL 55
Query: 76 EREKKRSSRR 85
E+ K + R
Sbjct: 56 EKAKNKPLAR 65
Score = 29.2 bits (66), Expect = 2.0
Identities = 16/50 (32%), Positives = 34/50 (68%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++K E+K++EK+++KE+K+++E+K+++ K + EE E+ EE
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEE 54
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 42.5 bits (101), Expect = 2e-04
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFGL+R D + + APE L +++ DVWS G + E+
Sbjct: 142 KISDFGLSRDLYDDDYYRKRGGKLPIRWMAPESLK-EGKFTSKSDVWSFGVLLWEIF 197
Score = 37.5 bits (88), Expect = 0.008
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
++YL S +HRD+ N LV N ++K
Sbjct: 115 MEYLESKNFIHRDLAARNCLVGENLVVK 142
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 43.5 bits (103), Expect = 2e-04
Identities = 17/92 (18%), Positives = 36/92 (39%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K+ + K KKK KK+ + +KKK+ +KK + + + ++
Sbjct: 1284 SPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQ 1343
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
+ R RR +K++ S ++ +
Sbjct: 1344 ASASQSSRLLRRPRKKKSDSSSEDDDDSEVDD 1375
Score = 41.2 bits (97), Expect = 0.001
Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 6/148 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ E+++E ++++ ++++ + K K K K K K ++K+K+KKK ++ ++
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGN 1197
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQLVMYQAT 120
R +R+ K KK +S + E T+P + + ++
Sbjct: 1198 SKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKK------SSVKRLKSKKNNSS 1251
Query: 121 YSSKICDFGLARVEEPDPNKAMTQEVVT 148
SS+ D + + + V+
Sbjct: 1252 KSSEDNDEFSSDDLSKEGKPKNAPKRVS 1279
Score = 38.1 bits (89), Expect = 0.010
Identities = 20/149 (13%), Positives = 51/149 (34%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+++ ++KE KE++ + K K K K +K K +KK+K++KK K ++ + +
Sbjct: 1143 EQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVD 1202
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQLVMYQAT 120
+R+ + KK + ++ + + + ++
Sbjct: 1203 SDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSS 1262
Query: 121 YSSKICDFGLARVEEPDPNKAMTQEVVTQ 149
+ + +
Sbjct: 1263 DDLSKEGKPKNAPKRVSAVQYSPPPPSKR 1291
Score = 36.6 bits (85), Expect = 0.024
Identities = 24/145 (16%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K EK + ++K+KE +K + + ++ K EE +E+++ EE+E +E+ + +
Sbjct: 1103 KVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKT 1162
Query: 63 R---RRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQLVMYQA 119
+ + R+ + ++K++++KK S+ + ++ R DS +P +
Sbjct: 1163 KGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSG 1222
Query: 120 TYSSKICDFGLARVEEPDPNKAMTQ 144
+ + + +
Sbjct: 1223 SDQEDDEEQKTKPKKSSVKRLKSKK 1247
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 42.1 bits (99), Expect = 2e-04
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K ++K EK K K + ++ KK ++KK+E+KK +KKK + + ++E
Sbjct: 34 NKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKVPLQVNPAQLFVDDE 92
Score = 38.6 bits (90), Expect = 0.002
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKK-------EKKKKEEKKKEKKKKEE 49
+ K K K + K + + +K K K +K +EKK+EKKK ++
Sbjct: 20 KYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKK 75
Score = 37.9 bits (88), Expect = 0.004
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKK-KEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
K+ + E +K K K+K E K + K EK K K + E ++ +E+
Sbjct: 10 KRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEE 69
Query: 65 RRRRRRR 71
+++ +++
Sbjct: 70 KKKPKKK 76
Score = 36.7 bits (85), Expect = 0.010
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKK-KEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
EK K K + E K + + +K K K + ++ KK +E+ EE+++ +++
Sbjct: 19 EKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 35.9 bits (83), Expect = 0.018
Identities = 11/61 (18%), Positives = 30/61 (49%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+ +K + K+K + + ++K +K K + + E+ KK + ++EE+ + +
Sbjct: 16 LESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKK 75
Query: 63 R 63
+
Sbjct: 76 K 76
Score = 35.2 bits (81), Expect = 0.032
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
++K EK K K + + KK ++KKE+KKK +KKK
Sbjct: 36 INSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 32.5 bits (74), Expect = 0.30
Identities = 11/59 (18%), Positives = 27/59 (45%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
EK K K K + + ++K ++ + + + E + + ++ +KK ++KK
Sbjct: 19 EKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 31.7 bits (72), Expect = 0.43
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+++ + K+ + E +K + K + + K + K +K K + + E ++
Sbjct: 2 KRQDFFRAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKL 61
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKP 87
+ KKE +KK ++ P
Sbjct: 62 H--------SQEKKEEKKKPKKKKVP 79
>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein
Serine/Threonine Kinase, Group I p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group I, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs are
implicated in the regulation of many cellular processes
including growth factor receptor-mediated proliferation,
cell polarity, cell motility, cell death and survival,
and actin cytoskeleton organization. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs, also called conventional PAKs, include
PAK1, PAK2, and PAK3. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). They interact
with the SH3 domain containing proteins Nck, Grb2 and
PIX. Binding of group I PAKs to activated GTPases leads
to conformational changes that destabilize the AID,
allowing autophosphorylation and full activation of the
kinase domain. Known group I PAK substrates include
MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc,
Stat5a, and Aurora A, among others.
Length = 293
Score = 42.6 bits (100), Expect = 2e-04
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 31/151 (20%)
Query: 122 SSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLG 181
S K+ DFG P+ +K T V T Y+ APE++ + Y VD+WS+G + E++
Sbjct: 153 SVKLTDFGFCAQITPEQSKRSTM-VGTPYWMAPEVVT-RKAYGPKVDIWSLGIMAIEMVE 210
Query: 182 RRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQA 241
+ ++P++ L LI GTP + + + LS+++
Sbjct: 211 GEPPYLNENPLRALYLIAT-NGTP------------------ELQNPEKLSAIFR----- 246
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
L + L D KR S L HP+L
Sbjct: 247 -----DFLNRCLEMDVEKRGSAKELLQHPFL 272
Score = 31.4 bits (71), Expect = 0.83
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLV 387
++L++LHS +++HRDIK N+L+
Sbjct: 125 LQALEFLHSNQVIHRDIKSDNILL 148
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 42.5 bits (100), Expect = 2e-04
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 367 LKYLHSARILHRDIKPGNLLVNS 389
+ YLH I+HRDIKP NLL+NS
Sbjct: 181 IAYLHRRHIVHRDIKPSNLLINS 203
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 42.4 bits (100), Expect = 2e-04
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 37/163 (22%)
Query: 124 KICDFGL-ARVEEPDPNKAMTQEVVTQYYRAPEILMGARH-YSAAVDVWSVGCIFAELLG 181
K+ DFG A+V + P + V T Y+ APE++ +R Y VD+WS+G + E++
Sbjct: 155 KLSDFGFCAQVSKEVPRRKSL--VGTPYWMAPEVI--SRLPYGTEVDIWSLGIMVIEMVD 210
Query: 182 RRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQA 241
+ + P+Q + I D L P ++++ + S L S
Sbjct: 211 GEPPYFNEPPLQAMKRIRDNL----PPKLKNL-----------HKVSPRLRS-------- 247
Query: 242 TGEAVHLLVQMLYFDPTKRISVNSALCHPYLDEGRLRFHSCMC 284
L +ML DP +R + L HP+L + S +
Sbjct: 248 ------FLDRMLVRDPAQRATAAELLNHPFLAKAGP--PSSIV 282
Score = 34.0 bits (78), Expect = 0.11
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 362 AAFKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
A K+L +LH+ ++HRDIK ++L+ S+ +K
Sbjct: 123 AVLKALSFLHAQGVIHRDIKSDSILLTSDGRVK 155
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 42.1 bits (100), Expect = 2e-04
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 24/62 (38%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYR------------APEILMGARHYSAAVDVWS 171
KI DFGL+R D YYR APE L +++ DVWS
Sbjct: 142 KISDFGLSRDIYEDD-----------YYRKRGGGKLPIKWMAPESLK-DGKFTSKSDVWS 189
Query: 172 VG 173
G
Sbjct: 190 FG 191
Score = 30.9 bits (71), Expect = 1.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
++YL S +HRD+ N LV N ++K
Sbjct: 115 MEYLESKNFVHRDLAARNCLVTENLVVK 142
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 42.7 bits (101), Expect = 2e-04
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 1 EKKKEKKK---EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK--KKEEEEGEEE 55
E+ E + E KKE KK ++K E+ + E +KK+E+ +K + K K KK ++ +
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Query: 56 EEGEEEGRRRRRRRRRRRKKEREKK 80
+G ++ + + KE +
Sbjct: 148 LSEALKGLNYKKNFKEKLLKELKSV 172
Score = 35.0 bits (81), Expect = 0.072
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
+ +++KK +K EK+ K+ + + + +KE K+ EK+ E +E
Sbjct: 411 DAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEPTADE 461
Score = 34.6 bits (80), Expect = 0.11
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K++ +K++K EK +K+ K+ + E K E++ KE +K+
Sbjct: 407 KEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQ 451
Score = 34.2 bits (79), Expect = 0.13
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK 40
+KEKK +K EK+ K+ + + K +KE K+ E++
Sbjct: 412 AYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQ 451
Score = 34.2 bits (79), Expect = 0.14
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRR 72
E+ E + + ++ K++ KK E+K E+ + + +K+EEE E+ + + ++ ++
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKI--EQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYD 145
Query: 73 RKKEREKKRSSRRKPFK 89
K + +K FK
Sbjct: 146 SNLSEALKGLNYKKNFK 162
Score = 32.7 bits (75), Expect = 0.38
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 1 EKKKEKKKEKKKEKKKEKK-----KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
EK K KKK + K+ +KEKK EK +K+ ++ + E K E+E E E
Sbjct: 390 EKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELE 449
Query: 56 EE 57
++
Sbjct: 450 KQ 451
Score = 31.5 bits (72), Expect = 0.94
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK--KKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
E +K K K K KK KK + E K +K KE+ KE K
Sbjct: 124 ELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLE 183
Query: 59 EEE 61
E +
Sbjct: 184 ELK 186
Score = 29.6 bits (67), Expect = 3.5
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK 40
+K+K+ ++ +KE K+ E + K +K+ ++ +K+
Sbjct: 414 QKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLT 453
Score = 29.6 bits (67), Expect = 3.7
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK-KKKEKKKKEEKK 41
EKK +K EK+ ++ + E K EK+ K+ EK+ +
Sbjct: 416 EKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEP 457
>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 8. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek8 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek8 contains an
N-terminal kinase catalytic domain and a C-terminal RCC1
(regulator of chromosome condensation) domain. A double
point mutation in Nek8 causes cystic kidney disease in
mice that genetically resembles human autosomal
recessive polycystic kidney disease (ARPKD). Nek8 is
also associated with a rare form of juvenile renal
cystic disease, nephronophthisis type 9. It has been
suggested that a defect in the ciliary localization of
Nek8 contributes to the development of cysts manifested
by these diseases.
Length = 256
Score = 42.2 bits (99), Expect = 3e-04
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 36/148 (24%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFG+++ +KA T V T Y +PE+ G + Y+ D+W++GC+ EL +
Sbjct: 142 KIGDFGISK-ILSSKSKAYTV-VGTPCYISPELCEG-KPYNQKSDIWALGCVLYELASLK 198
Query: 184 ILFQAQS-PVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQAT 242
F+A + P L +++ GT P +S + +
Sbjct: 199 RAFEAANLPALVLKIMS---GTFAP-----------------------------ISDRYS 226
Query: 243 GEAVHLLVQMLYFDPTKRISVNSALCHP 270
+ L++ ML DP+KR ++ + P
Sbjct: 227 PDLRQLILSMLNLDPSKRPQLSQIMAQP 254
Score = 32.1 bits (73), Expect = 0.42
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 366 SLKYLHSARILHRDIKPGNLLVN 388
+L ++H+ ILHRD+K N+L++
Sbjct: 113 ALHHVHTKLILHRDLKTQNILLD 135
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 42.2 bits (100), Expect = 3e-04
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 37/152 (24%)
Query: 124 KICDFGL-ARVEEPDPN-KAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL- 180
K+ DFG A++ + ++ V T Y+ APE ++ + Y VD+WS+G + E+
Sbjct: 156 KLADFGFAAQLTKEKSKRNSV---VGTPYWMAPE-VIKRKDYGPKVDIWSLGIMCIEMAE 211
Query: 181 GRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQ 240
G + + P++ L LIT G P + + S
Sbjct: 212 GEPPYLR-EPPLRALFLITT-KGIPPLKN------------------PEKWSP------- 244
Query: 241 ATGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
E L + L DP KR S L HP+L
Sbjct: 245 ---EFKDFLNKCLVKDPEKRPSAEELLQHPFL 273
Score = 41.8 bits (99), Expect = 3e-04
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSN 390
+ L+YLHS ++HRDIK N+L++ +
Sbjct: 127 QGLEYLHSQNVIHRDIKSDNILLSKD 152
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 40.4 bits (95), Expect = 3e-04
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E++K K+ K+K K+KK+KKKKK+KKKK+ KK KKK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 40.1 bits (94), Expect = 3e-04
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+E+K K+ K+K ++KK++KKKKK+KKKK KK KKKK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 39.3 bits (92), Expect = 7e-04
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK 37
K+ KEK K+KK++KKKK+KKKK+ KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 38.9 bits (91), Expect = 8e-04
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
+E+K K+ K+K K+KK+KKKK+KKKKK+ KK KKK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 32.7 bits (75), Expect = 0.11
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 20 KKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
K+ K+K K+KK++KKKK++KKK+ KK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 30.4 bits (69), Expect = 0.79
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E++K K+ ++K K++K+KK++KKK+KKK ++
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 42.7 bits (101), Expect = 3e-04
Identities = 21/86 (24%), Positives = 45/86 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK++ ++ KKK K+ EK+ +E +++ + ++ K KKEE ++ KK+ E+ E+ E
Sbjct: 335 EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELE 394
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E + + K + +++
Sbjct: 395 ELEKAKEEIEEEISKITARIGELKKE 420
Score = 42.7 bits (101), Expect = 3e-04
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE-EKKKEK--KKKEEEEGEEEEEG 58
K+KEK+ E+ + E + + +E+ +K EK+ KE E+ KE+ + ++E E E +
Sbjct: 196 KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKR 255
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+ E + R R K+ ++ + K
Sbjct: 256 KLEEKIRELEERIEELKKEIEELEEKVK 283
Score = 40.8 bits (96), Expect = 0.001
Identities = 21/85 (24%), Positives = 44/85 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ +E +KE + + ++K +EK ++ +++ +E KK+ E+ +EK K+ +E E+ EE +
Sbjct: 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK 297
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
R+ E+ R
Sbjct: 298 LSEFYEEYLDELREIEKRLSRLEEE 322
Score = 38.9 bits (91), Expect = 0.004
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE----- 55
EK+ ++ +E K+E ++ +K+ E + K+K +EK ++ E++ E+ KKE EE EE+
Sbjct: 227 EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK 286
Query: 56 --EEGEEEGRRRRRRRRRRRKKERE-KKRSSR 84
+E EE + + RE +KR SR
Sbjct: 287 ELKEKAEEYIKLSEFYEEYLDELREIEKRLSR 318
Score = 38.1 bits (89), Expect = 0.007
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE---------EKKKEKKKKEEEEG 52
KKK K+ EK+ E+ +E+ + ++ K KK++ E+ KK EK+ E+ +K +EE
Sbjct: 344 KKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403
Query: 53 EEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
EEE ++ + KK E+ + ++ K
Sbjct: 404 EEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
Score = 37.4 bits (87), Expect = 0.013
Identities = 21/80 (26%), Positives = 46/80 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK+ + +E+ ++ K+ E+K++ ++ K+K K+ EK+ E+ ++ E EE + +E
Sbjct: 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE 372
Query: 61 EGRRRRRRRRRRRKKEREKK 80
E R ++R ++ EK+
Sbjct: 373 ELERLKKRLTGLTPEKLEKE 392
Score = 37.0 bits (86), Expect = 0.018
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE--------EEEG 52
+ E K K +EK +E +++ ++ K++ ++ E+K KE K+ ++K +E EE
Sbjct: 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYL 306
Query: 53 EEEEEGEEEGRRRRRRRR--RRRKKEREKKRS 82
+E E E+ R R KE E+K
Sbjct: 307 DELREIEKRLSRLEEEINGIEERIKELEEKEE 338
Score = 36.6 bits (85), Expect = 0.024
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+ E +E KEK+KE E+ +E + + + ++ EK +KE +E EE +E EE
Sbjct: 186 KRTENIEELIKEKEKEL---EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE 242
Query: 62 GRRRRRRRRRRRKKEREKKRSSRR 85
+ ++K EK R
Sbjct: 243 LEKELESLEGSKRKLEEKIRELEE 266
Score = 36.6 bits (85), Expect = 0.024
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KK +++ K ++ + +K ++ K+ ++ +KK E++ E+ ++E E E G
Sbjct: 620 ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLR 679
Query: 61 EGRRRRRRRR----------RRRKKEREKKR 81
+RR + +EREK +
Sbjct: 680 AELEELEKRREEIKKTLEKLKEELEEREKAK 710
Score = 36.6 bits (85), Expect = 0.025
Identities = 19/79 (24%), Positives = 45/79 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ ++ EK +++ KE ++ +++ +E +K+ E + ++K E+K +E EE EE + E
Sbjct: 216 LPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
Query: 61 EGRRRRRRRRRRRKKEREK 79
E + + + K++ E+
Sbjct: 276 EELEEKVKELKELKEKAEE 294
Score = 36.2 bits (84), Expect = 0.028
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+KE ++E+K+ KK E++ + ++ + +K ++ ++ +E +KK EE EE E
Sbjct: 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLE 670
Query: 63 RRRRRRRRRRRKKEREKKR 81
R R +E EK+R
Sbjct: 671 LSRELAGLRAELEELEKRR 689
Score = 36.2 bits (84), Expect = 0.029
Identities = 22/91 (24%), Positives = 47/91 (51%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ +K+ E+ +EK KE K+ ++K +E K E ++ + + +K EEE G EE
Sbjct: 269 EELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
+ + R ++ ++K + ++ +L E
Sbjct: 329 RIKELEEKEERLEELKKKLKELEKRLEELEE 359
Score = 36.2 bits (84), Expect = 0.030
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE-KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+ E+ ++ +E +K + E++ +++ KE ++KEE+ +E KKK +E + EE E
Sbjct: 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE 358
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
E + ++ + ER KKR + P KL +
Sbjct: 359 ERHELYEEAKAKKEELERLKKRLTGLTPEKLEK 391
Score = 35.8 bits (83), Expect = 0.037
Identities = 19/90 (21%), Positives = 39/90 (43%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + E KE K+ ++ EK K + +E K++EK+ E+ +E E E
Sbjct: 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELR 220
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKL 90
E + + + ++ +E+ ++ L
Sbjct: 221 EELEKLEKEVKELEELKEEIEELEKELESL 250
Score = 35.4 bits (82), Expect = 0.054
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG-EEEEEGE 59
EK + K E K KK+ +K +E KKK + +K+ + EE+ E K+ EE G E EE E
Sbjct: 532 EKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELE 591
Query: 60 EEGRRRR------------RRRRRRRKKEREKKRSSRRKPFK 89
E + + R +KE +K K F+
Sbjct: 592 ERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFE 633
Score = 35.4 bits (82), Expect = 0.056
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E +K ++ +K+ ++ EKK E++ +E +++ + +E + +E E+ EE +
Sbjct: 637 ETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696
Query: 61 EGRRRRRRRRRRRKKEREK 79
E + R + KKE EK
Sbjct: 697 EKLKEELEEREKAKKELEK 715
Score = 35.4 bits (82), Expect = 0.057
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK-KKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
++ EK +++ KE ++ K++ E+ +KE + + K+K EEK +E +++ EE +E EE E
Sbjct: 220 REELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE 279
Query: 60 EEGRRRRRRRRRRRKKEREKK 80
E + + KE ++K
Sbjct: 280 E---------KVKELKELKEK 291
Score = 34.3 bits (79), Expect = 0.12
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK-------------KKEKKKKEEKKKEKKKK 47
EK+ ++ +EK+++ +KE ++ EK K++ + +EK KK ++ +KK
Sbjct: 465 EKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKA 524
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
EE E +E+ + +G + ++ + +E +KK
Sbjct: 525 EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
Score = 34.3 bits (79), Expect = 0.13
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE-KKKKEEKKKEKKKKEEEEGEEEEEGE 59
EKK E+ ++ K++ K K + + KKE +K +E KKK E +K+ + EEE E +E E
Sbjct: 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
Query: 60 EEG 62
E G
Sbjct: 581 ELG 583
Score = 33.9 bits (78), Expect = 0.17
Identities = 20/75 (26%), Positives = 42/75 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++ E+ +E+ E +E + +E +K++E+ KK +K +++ +E E+ ++E E E
Sbjct: 658 EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717
Query: 61 EGRRRRRRRRRRRKK 75
+ R R + KK
Sbjct: 718 KALERVEELREKVKK 732
Score = 33.9 bits (78), Expect = 0.18
Identities = 16/101 (15%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK--------KKEKKKKEEKKKEKKKKEEEEG 52
++K E+ + + ++ + + +K + ++ K+ EEK++ ++ +++
Sbjct: 289 KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK 348
Query: 53 EEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
E E+ EE R + KKE ++ R ++
Sbjct: 349 ELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKL 389
Score = 33.9 bits (78), Expect = 0.19
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE----EEEEGEEEGR 63
K+ +KE ++E+K+ +K ++E K E+ + EK+ E+ +KE EE E EEE E
Sbjct: 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREE 667
Query: 64 RRRRRRRRRRKKEREKKRSSRRK 86
R + ++ RR+
Sbjct: 668 YLELSRELAGLRAELEELEKRRE 690
Score = 33.1 bits (76), Expect = 0.31
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E +KE +E E K+ EK+ KE ++K+ K +KE ++ EK K+E E + +E E+ +
Sbjct: 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE 507
Query: 65 RRRRRRRRRKKEREKK 80
+ ++ +E EKK
Sbjct: 508 LEEKLKKYNLEELEKK 523
Score = 33.1 bits (76), Expect = 0.31
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K+ E+ +EK KE K+ K+K E+ K + +E + + +++ + EEE EE +
Sbjct: 272 KKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
Query: 61 EGRRRRRRRRRRRKKERE-KKRSSRRKPF 88
E + R +KK +E +KR +
Sbjct: 332 ELEEKEERLEELKKKLKELEKRLEELEER 360
Score = 32.0 bits (73), Expect = 0.67
Identities = 20/94 (21%), Positives = 48/94 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E E ++ +K+ + E++ +++ K+ ++++++ EE KK+ K+ E+ E EE E
Sbjct: 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHEL 363
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEIS 94
+ ++ R K+R + + +L E+
Sbjct: 364 YEEAKAKKEELERLKKRLTGLTPEKLEKELEELE 397
Score = 31.2 bits (71), Expect = 1.2
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRR 66
E + E K+ K++ E + +K K+ E ++ K+KE+E E E E
Sbjct: 159 DYENAYKNLGEVIKEIKRRIE-RLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP 217
Query: 67 RRRRRRRKKEREKKRSSRRK 86
R K E+E K K
Sbjct: 218 ELREELEKLEKEVKELEELK 237
Score = 31.2 bits (71), Expect = 1.2
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKK--KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
+ E KE K+ ++ +K K+ + +E K+KEK+ +E ++ + E EE
Sbjct: 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE 224
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+ E + + +E EK+ S
Sbjct: 225 KLEKEVKELEELKEEIEELEKELESLEG 252
Score = 31.2 bits (71), Expect = 1.2
Identities = 19/86 (22%), Positives = 47/86 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E +KE ++ +KK ++E ++ ++ E ++ + E ++ EK+++E ++ E+ + E
Sbjct: 644 ELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEEL 703
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E R + ++ + +K E+ R K
Sbjct: 704 EEREKAKKELEKLEKALERVEELREK 729
Score = 28.9 bits (65), Expect = 6.7
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 28/125 (22%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK------------------------KKKEKKK 36
+KK + ++K E ++E + K+ +E K EK+
Sbjct: 555 KKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKEL 614
Query: 37 KEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR----RRRKKEREKKRSSRRKPFKLSE 92
+ E+K+ KK +EE + EE E E R R+ ++ E E + E
Sbjct: 615 EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRE 674
Query: 93 ISATR 97
++ R
Sbjct: 675 LAGLR 679
Score = 28.5 bits (64), Expect = 7.8
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1 EKKKEKKKEKKKEKK---KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E +KE +E E K KE K+ E+K+++ +K+ + +K KK+ + K +E E+ +E
Sbjct: 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE 507
Query: 58 GEEE 61
EE+
Sbjct: 508 LEEK 511
Score = 28.1 bits (63), Expect = 9.1
Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+++ E+ K++ EK +KE ++ EK K++ +++ + + ++E E ++ EE
Sbjct: 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430
Query: 61 -EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISAT 96
+ + + R E +K +L I
Sbjct: 431 LKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKE 467
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 42.7 bits (100), Expect = 3e-04
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
KE K+ + +K++ EK + E KK E K K+ K + K++ + +E E+ E E ++
Sbjct: 269 PKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQK 328
Query: 65 RRRRRRRRRKKEREKKRS 82
+R +K + + +
Sbjct: 329 KREPVAEDLQKTKPQVEA 346
Score = 41.1 bits (96), Expect = 8e-04
Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE--------KKKKEEEEG 52
+ +K++++ ++K++E K K K++K+ E +K+E KK EE
Sbjct: 240 QDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALK 299
Query: 53 EEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
++ + + + + + KE E ++
Sbjct: 300 AKDHKAFDLKQESKASEKEAEDKELEAQK 328
Score = 40.0 bits (93), Expect = 0.002
Identities = 14/91 (15%), Positives = 41/91 (45%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ +KK+ + +++ + +++ + +K++E K K E+++ E +
Sbjct: 220 EELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQ 279
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
R + + +K + E ++ K F L +
Sbjct: 280 KREIEKAQIEIKKNDEEALKAKDHKAFDLKQ 310
Score = 37.3 bits (86), Expect = 0.014
Identities = 14/88 (15%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK--EEKKKEKKKKEEEEGEEEEEG 58
E++ ++ ++ ++ K+E KK+ + ++K + + ++++ E ++K++E +
Sbjct: 205 ERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPA 264
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+ + ++ +K+E EK + +K
Sbjct: 265 DTSSPKEDKQVAENQKREIEKAQIEIKK 292
Score = 35.0 bits (80), Expect = 0.067
Identities = 15/102 (14%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE-EEEGEEEEEGE 59
+++ K++E +++ K+ ++ K+E KK+ K ++K + + +++ +E + +
Sbjct: 195 NFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQ 254
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDST 101
+E + + KE ++ ++++ + ++I + D
Sbjct: 255 QEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEE 296
Score = 32.7 bits (74), Expect = 0.31
Identities = 16/82 (19%), Positives = 42/82 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+KK + + EK ++ KE++ +++ K+ ++ K+E KK+ + + +++ +
Sbjct: 179 DKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADF 238
Query: 61 EGRRRRRRRRRRRKKEREKKRS 82
++R R+K++E K
Sbjct: 239 AQDNADKQRDEVRQKQQEAKNL 260
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 39.4 bits (92), Expect = 3e-04
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K+EKK EK ++ + KK++KKKK+ K K +K +K++++ +E E EE
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEES 60
Query: 63 RRRR 66
+RRR
Sbjct: 61 KRRR 64
Score = 36.3 bits (84), Expect = 0.004
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 1 EKKKEKKKEKKK------EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
E+KK +K +K+ KK KKKK++ K + K KK +++ KK+ + E E +
Sbjct: 2 EEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESK 61
Query: 55 EEEGEE 60
E+
Sbjct: 62 RRRTED 67
Score = 35.5 bits (82), Expect = 0.006
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
KK++KKK++ + + + KK +KK K+K + E +E K++ E+G
Sbjct: 22 KKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTEDG 68
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 42.5 bits (100), Expect = 3e-04
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 21/99 (21%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK-------------- 47
+ E + E K ++ ++E ++KEK+K+K KK E + E ++
Sbjct: 266 DEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESE 325
Query: 48 -------EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREK 79
++E E+EE RRR RRR KK+ K
Sbjct: 326 EPEPPPLPKKEEEKEEVTVSPDGGRRRGRRRVMKKKTFK 364
Score = 41.0 bits (96), Expect = 7e-04
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+KK ++KKEKK+ + K++ E++ K E++ E +E+E E+E + E
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERS 281
Query: 64 RRRRRRRRRRKKEREKKR 81
+ K++R++ +
Sbjct: 282 DSEEETEEKEKEKRKRLK 299
Score = 38.7 bits (90), Expect = 0.005
Identities = 23/85 (27%), Positives = 33/85 (38%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ K K ++ KK KKK KEKK+K+E + K+E EE + +
Sbjct: 196 TEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVIL 255
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
E + E E K S R
Sbjct: 256 EDESAEPTGLDEDEDEDEPKPSGER 280
Score = 36.7 bits (85), Expect = 0.019
Identities = 21/90 (23%), Positives = 31/90 (34%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ KE EK + K K K+ KK ++K KEKK+K+E +E E
Sbjct: 186 DTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESE 245
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKL 90
E +R E +
Sbjct: 246 EESGKRDVILEDESAEPTGLDEDEDEDEPK 275
Score = 35.6 bits (82), Expect = 0.038
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K + + + +++ + E K E+ EE+ +EK+K++ + ++ E E+
Sbjct: 247 ESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDED 306
Query: 61 E 61
E
Sbjct: 307 E 307
Score = 28.3 bits (63), Expect = 7.3
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK-------KEEEEGE 53
E+++ ++ E KKE++K+E ++ +++ KKK K K+ E E
Sbjct: 320 EEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGRRRVMKKKTFKDEEGYLVTKKVYEWE 379
Query: 54 EEEEGEEE 61
E E E
Sbjct: 380 SFSEDEAE 387
Score = 28.3 bits (63), Expect = 9.2
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
K K + K K KK + KE +K + K K K+ +
Sbjct: 164 SSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPK 213
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 41.8 bits (98), Expect = 3e-04
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKE---KKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+KK + +K+ K+KEK++ E +K + +KK+EEK++ + K G G+
Sbjct: 151 SRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSG 210
Query: 62 GRRRRRRRRRRRKKEREKKR 81
+ + +R+K + +R
Sbjct: 211 LSTKDEPPKEKRQKHHDPER 230
Score = 41.0 bits (96), Expect = 4e-04
Identities = 18/84 (21%), Positives = 44/84 (52%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
KE + +K+ E +K+ K+KEK++ ++ +K +E +++K++++ E++ G G
Sbjct: 145 KECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGS 204
Query: 64 RRRRRRRRRRKKEREKKRSSRRKP 87
+ + + ++KR P
Sbjct: 205 SGGQSGLSTKDEPPKEKRQKHHDP 228
Score = 40.2 bits (94), Expect = 8e-04
Identities = 16/78 (20%), Positives = 41/78 (52%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
K+ K+KEK++ + ++ K+ +KK++EK++ +E K+ G+ ++E +
Sbjct: 161 KRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKE 220
Query: 66 RRRRRRRRKKEREKKRSS 83
+R++ ++ E +
Sbjct: 221 KRQKHHDPERRLEPQSHE 238
Score = 38.7 bits (90), Expect = 0.003
Identities = 16/77 (20%), Positives = 40/77 (51%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+ K+KEK++ + +K K++++KK+++K++ + K + ++E +E
Sbjct: 161 KRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKE 220
Query: 62 GRRRRRRRRRRRKKERE 78
R++ RR + +
Sbjct: 221 KRQKHHDPERRLEPQSH 237
Score = 31.0 bits (70), Expect = 0.93
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK++ + +K KE ++ KK++EK++ ++ K+ + ++E +E+ +
Sbjct: 168 EKRRVEDSQKHKEDRR-KKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKEKRQKHH 226
Query: 61 EGRRR 65
+ RR
Sbjct: 227 DPERR 231
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 42.6 bits (100), Expect = 3e-04
Identities = 17/78 (21%), Positives = 42/78 (53%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
K + ++ + ++ E++K E++ KK K+ KK + KK K + + G++ ++ + +G
Sbjct: 311 KPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGE 370
Query: 64 RRRRRRRRRRKKEREKKR 81
+++KE +K+
Sbjct: 371 DSVSLVTAKKQKEPKKEE 388
Score = 37.2 bits (86), Expect = 0.014
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 36/119 (30%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKK----------------------------------- 25
EK K+KKK+ K KKK K+ K+
Sbjct: 239 EKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPE 298
Query: 26 -KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSS 83
+E K E K E ++++ +E EE + EEEG + ++ ++ + +K +K S
Sbjct: 299 EREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSD 357
Score = 37.2 bits (86), Expect = 0.015
Identities = 12/59 (20%), Positives = 32/59 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+K + K + ++ E ++ +++K +++ KK ++ KK K KK + ++ + G+
Sbjct: 302 DKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGD 360
Score = 35.3 bits (81), Expect = 0.048
Identities = 18/79 (22%), Positives = 44/79 (55%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
E ++ E +K + K+ K K+ + +E++G+E ++G E+G + ++++++ + +KK
Sbjct: 196 EDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKL 255
Query: 82 SSRRKPFKLSEISATRPDS 100
+K + + A DS
Sbjct: 256 DDDKKGKRGGDDDADEYDS 274
Score = 34.6 bits (79), Expect = 0.093
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
++K KKKK+K K +KK ++KK ++ ++ + + ++G++EGR
Sbjct: 236 GDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGR 282
Score = 33.4 bits (76), Expect = 0.21
Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 31/135 (22%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK----------------------- 37
+ +EK K+KKK+ K KKK + KK K+ + +
Sbjct: 235 DGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASG 294
Query: 38 -EEKKKEKKKKEEEE-------GEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
+ +++E K E E+ EE EEE ++ KK ++ K
Sbjct: 295 NDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Query: 90 LSEISATRPDSTIDG 104
S+ DS IDG
Sbjct: 355 DSDSGDDSDDSDIDG 369
Score = 33.4 bits (76), Expect = 0.24
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
+K E E+K +KKK+K K KKK + KK ++ ++ + ++EG EE
Sbjct: 230 DKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREE 284
Score = 31.1 bits (70), Expect = 1.0
Identities = 14/68 (20%), Positives = 37/68 (54%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
E ++ E +K + K+ K K+ + ++ +E + E+ EE+ ++++++ + +KK
Sbjct: 196 EDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKL 255
Query: 77 REKKRSSR 84
+ K+ R
Sbjct: 256 DDDKKGKR 263
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 40.3 bits (95), Expect = 3e-04
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 16/77 (20%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K EK+ ++KEKKK++K+ KK++ + + ++ KE +KEK+
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRT---------------- 113
Query: 63 RRRRRRRRRRRKKEREK 79
R+ R ++ +RR+KE+EK
Sbjct: 114 RKNREKKFKRRQKEKEK 130
Score = 39.9 bits (94), Expect = 3e-04
Identities = 16/50 (32%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 1 EKKKEKKKEKKK---EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+KKK K+ KK+ + + ++ KE+ +KEK+ +K ++KK ++++++K+K
Sbjct: 81 KKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 38.8 bits (91), Expect = 9e-04
Identities = 18/50 (36%), Positives = 35/50 (70%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
EKKK++K+ KK + + ++E+ K+ +K+K +K EKK ++++KE+E
Sbjct: 80 EKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKE 129
Score = 36.1 bits (84), Expect = 0.006
Identities = 14/56 (25%), Positives = 37/56 (66%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
E +EK+K+KK+++ +K++ + + ++ K+ +K++ +K ++KK + +E+E
Sbjct: 74 ELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKE 129
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 41.0 bits (96), Expect = 3e-04
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK 41
+ + K EKK +KKK E K+ KKKKKEKKKK+++
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 39.0 bits (91), Expect = 0.001
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
+ + K EKK K KKK E K+++KKKKE+KKK+K+ E G
Sbjct: 133 DSEGLKGHEKKHK-KKKHEDDKERKKKKKEKKKKKKRHSPEHPG 175
Score = 36.0 bits (83), Expect = 0.013
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK 37
+ + K EKK +KKK + KE+KKK+K+KKK+KK+
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 34.4 bits (79), Expect = 0.050
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 2 KKKEK-KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K K K KK + ++ E+ + + + +KK KKKK E KE+KKK++E+ +++
Sbjct: 112 KHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKK 166
Score = 34.0 bits (78), Expect = 0.058
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 15/71 (21%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKK---------------KKEKKKKKEKKKKEEKKKEKKKK 47
+ K+K K K K+ + ++ KK KKKK E K+ +KKK++KKK
Sbjct: 105 HIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKK 164
Query: 48 EEEEGEEEEEG 58
+++ E G
Sbjct: 165 KKKRHSPEHPG 175
Score = 33.6 bits (77), Expect = 0.076
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE 38
K EKK +KKK + +++KK+KK+K+KKKK+ +
Sbjct: 137 LKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
Score = 30.6 bits (69), Expect = 0.86
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 31 KKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
+ KK+ K K KK + ++ EE + EG + ++ +++K E +K+R ++K K
Sbjct: 105 HIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKK 163
Score = 29.0 bits (65), Expect = 2.6
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 14 KKKEKKKKEKKKKEKKKKKE-----KKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
KKK K K +K + + +E + K +KK KKKK E++ E +++ +E+ ++++R
Sbjct: 110 KKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Query: 69 R 69
Sbjct: 170 S 170
Score = 27.9 bits (62), Expect = 7.4
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRR----- 71
E+ + + KKK K K KK + EE + EG + ++ ++++
Sbjct: 99 EQYRLMHIQPPKKKHKHKHKKHRTQDPL----PEETPSDSEGLKGHEKKHKKKKHEDDKE 154
Query: 72 RRKKEREKKRSSRRK 86
R+KK++EKK+ +R
Sbjct: 155 RKKKKKEKKKKKKRH 169
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 41.0 bits (96), Expect = 3e-04
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+KE++KE E K K++++K + E+ +K+++ + E++ +++E+EE +EEE EE
Sbjct: 36 ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
E +++E + R+KPFK
Sbjct: 96 EA-------EDVKQQEVFSFK--RKKPFK 115
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 42.4 bits (100), Expect = 4e-04
Identities = 16/86 (18%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEK-KKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ E + +E+ +E + + ++ +E+ ++ KEK + +++ E+++ EE E+ E
Sbjct: 298 EELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELE 357
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E + + +E E+ + R+
Sbjct: 358 EAKEELEEKLSALLEELEELFEALRE 383
Score = 40.1 bits (94), Expect = 0.002
Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ +E + E ++ +++ ++ KEK + K++ +E++ E+ ++ + EE EE EE
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEE--- 365
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
+ E ++ +
Sbjct: 366 --KLSALLEELEELFEALREELAEL 388
Score = 39.7 bits (93), Expect = 0.003
Identities = 16/82 (19%), Positives = 40/82 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E ++ +++ ++ ++K E K+E +++E ++ ++ E ++ K++ EE+ EE EE
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
Query: 61 EGRRRRRRRRRRRKKEREKKRS 82
R + E +
Sbjct: 377 LFEALREELAELEAELAEIRNE 398
Score = 39.7 bits (93), Expect = 0.003
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K++ + K++ +++E +E ++ + ++ K++ EEK ++ EE E E
Sbjct: 327 ELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386
Query: 61 EGRRRRRR-RRRRRKKEREKKRSSRRK 86
E R + +RE + R
Sbjct: 387 ELEAELAEIRNELEELKREIESLEERL 413
Score = 39.3 bits (92), Expect = 0.004
Identities = 20/99 (20%), Positives = 41/99 (41%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K++ +++E E+ ++ + ++ KE+ ++K EE ++ + EE E E E E
Sbjct: 335 LKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAE 394
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPD 99
+R E +R S R E+ +
Sbjct: 395 IRNELEELKREIESLEERLERLSERLEDLKEELKELEAE 433
Score = 38.9 bits (91), Expect = 0.004
Identities = 18/86 (20%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE-EKKKEKKKKEEEEGEEEEEGEE 60
++ EK+ E+ K + +E +++ ++ +E+ + +++ +E E + ++ EE E E E E
Sbjct: 263 EEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E + + K+E E++ + +
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEE 348
Score = 38.9 bits (91), Expect = 0.005
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ ++ +E +K+ +K +++ EK ++ ++ K E ++ E K KE + EE E E
Sbjct: 189 ERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEEL 248
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISA 95
+ +E EK+ + +L E+
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKS--ELEELRE 281
Score = 38.5 bits (90), Expect = 0.006
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++ + +E+ +E ++E ++ EK+ +E K + E+ ++E ++ +++ E +E EE EGE
Sbjct: 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGE- 303
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATR 97
R R + E E + R +I A +
Sbjct: 304 ----ISLLRERLEELENELEELEERLEELKEKIEALK 336
Score = 38.5 bits (90), Expect = 0.007
Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKK---KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E ++E + K++ ++ E + +E+ ++ + + +E +++ E+ KEK + +EE EE E
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERET 344
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
EE + +++ EK + + +L E
Sbjct: 345 LLEELEQLLAELEEAKEELEEKLSALLEELEELFE 379
Score = 38.2 bits (89), Expect = 0.007
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
K+ K+ E+ ++E + E++ ++ +++ EE +KE ++ + E E EE EE +
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294
Query: 70 RRRRKKEREKKRSSRRKPFKLSEI 93
+ E E R +E+
Sbjct: 295 EEIEELEGEISLLRERLEELENEL 318
Score = 37.4 bits (87), Expect = 0.012
Identities = 17/84 (20%), Positives = 39/84 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ E ++ K++ ++K E+ ++ + +E+ + E + + + E EE + E E E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410
Query: 61 EGRRRRRRRRRRRKKEREKKRSSR 84
E R R K+E ++ +
Sbjct: 411 ERLERLSERLEDLKEELKELEAEL 434
Score = 36.6 bits (85), Expect = 0.027
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ +E+K+E ++E ++ + + + K+E +K +E+ ++ E K E+ + E E EEE E E
Sbjct: 880 KELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEY 939
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
E R + E E +
Sbjct: 940 EDTLETELEREIERLEEEIEA 960
Score = 35.8 bits (83), Expect = 0.038
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK-KKEEEEGEEEEEGE 59
E++ E+ +EK E ++E ++ EK+ +E K++ E+ + E+++ E + K+ EEE EE EE
Sbjct: 834 EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRK 86
E + +K RE+ K
Sbjct: 894 RELESELAELKEEIEKLRERLEELEAK 920
Score = 35.5 bits (82), Expect = 0.053
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKK--KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
E++ E+ +E+ +E +++ ++E ++ EK+ ++ K++ EE + EK++ E+E E EEE
Sbjct: 827 EQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK 886
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
EE R + + E ++ R
Sbjct: 887 EELEEELRELESELAELKEEIEKLRERL 914
Score = 35.1 bits (81), Expect = 0.079
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+EK E ++E ++ +K+ E+ K+E ++ + +K++ E + ++ ++E+EE EEE E
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900
Query: 64 RRRRR-----RRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQAR 108
+ R R + E + +R P E+ D+ +
Sbjct: 901 AELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950
Score = 34.3 bits (79), Expect = 0.11
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 3 KKEKKKEKK-KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE---EG 58
+++ +K ++ +E K E ++ E K K+ +K+ EE ++E + EEE E +E E
Sbjct: 206 ERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEA 265
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATR 97
E+E + R++ E + ++ E+
Sbjct: 266 EKEIEELKSELEELREELEELQEELLELKEEIEELEGEI 304
Score = 34.3 bits (79), Expect = 0.12
Identities = 18/78 (23%), Positives = 38/78 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK++ +++ ++ E + + K+E +K ++ ++ + K E + E + EEE EE E+ E
Sbjct: 885 EKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLE 944
Query: 61 EGRRRRRRRRRRRKKERE 78
R R +
Sbjct: 945 TELEREIERLEEEIEALG 962
Score = 33.5 bits (77), Expect = 0.21
Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ + + E+ +E+ +E +++ ++ +E+ ++ E++ + ++ K KEE E EE+
Sbjct: 732 LEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQAL 791
Query: 61 EGRRR------RRRRRRRRKKEREKKRSSRRKPFKLSEISATR 97
+ RR ERE + +R+ EI
Sbjct: 792 QEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834
Score = 33.1 bits (76), Expect = 0.32
Identities = 15/98 (15%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK--KKKEEKKKEKKKKEEEEGEEEEEG 58
+++KE+ + K + ++ ++ E +E +K+ EK ++ E+ ++ ++ K E E
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISAT 96
+ + R+ ++ + +L E
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE 268
Score = 32.8 bits (75), Expect = 0.36
Identities = 20/80 (25%), Positives = 46/80 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E ++ +K+ ++ +++ E+ + EK++ E + K+ +++KEE ++E ++ E E E +EE E+
Sbjct: 850 ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEK 909
Query: 61 EGRRRRRRRRRRRKKEREKK 80
R + + E E
Sbjct: 910 LRERLEELEAKLERLEVELP 929
Score = 32.8 bits (75), Expect = 0.37
Identities = 13/95 (13%), Positives = 37/95 (38%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ +++ E+K E+ ++ + ++ + + + E + E ++ + E EE E
Sbjct: 357 EEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERL 416
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISAT 96
R + ++ E E + E+
Sbjct: 417 SERLEDLKEELKELEAELEELQTELEELNEELEEL 451
Score = 32.8 bits (75), Expect = 0.38
Identities = 19/87 (21%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K+ ++++++ E++ + + E + +++ +K +++ EE + K ++ E E E EE E
Sbjct: 878 ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE-LEAKLERLEVELPELEEELE 936
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKP 87
E R+ ER ++ P
Sbjct: 937 EEYEDTLETELEREIERLEEEIEALGP 963
Score = 32.8 bits (75), Expect = 0.43
Identities = 16/88 (18%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE--EGEEEEEG 58
+++ +++ ++ E++ E+ ++ E++ + ++++E ++E ++ EEE E EE+ +
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE 846
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
EE + K+E E+ + + +
Sbjct: 847 LEEELEELEKELEELKEELEELEAEKEE 874
Score = 32.4 bits (74), Expect = 0.57
Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE- 59
E +E+ E + E + + + E+ K+E + +E+ ++ ++ E K+E +E E E E
Sbjct: 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQ 438
Query: 60 -------------EEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQ 106
EE R R + ++E + + ++ K R D +
Sbjct: 439 TELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498
Query: 107 ARQPTRQL 114
A Q R +
Sbjct: 499 ASQGVRAV 506
Score = 30.8 bits (70), Expect = 1.4
Identities = 16/86 (18%), Positives = 45/86 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E ++ +++ ++ E++ E ++ K +++ ++ ++K++ ++E ++ EEE E E +
Sbjct: 752 ELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDA 811
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
R +RR + E+E +
Sbjct: 812 LERELESLEQRRERLEQEIEELEEEI 837
Score = 30.1 bits (68), Expect = 2.5
Identities = 17/88 (19%), Positives = 38/88 (43%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
+K E++ + K E + E ++ +++ EE +++ ++ + E EEE E+ R
Sbjct: 684 EKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELE 743
Query: 70 RRRRKKEREKKRSSRRKPFKLSEISATR 97
+ E E + R E+ +
Sbjct: 744 EELEELEEELEELQERLEELEEELESLE 771
Score = 28.9 bits (65), Expect = 5.3
Identities = 19/92 (20%), Positives = 48/92 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ +E ++ ++ +++ + +E K K++ +E ++K + +E+ ++ EEE EE E +
Sbjct: 751 EELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD 810
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
R +RR++ ++ + +L E
Sbjct: 811 ALERELESLEQRRERLEQEIEELEEEIEELEE 842
Score = 28.5 bits (64), Expect = 8.2
Identities = 14/86 (16%), Positives = 43/86 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ +E+ E + + +K +++ + K E + ++ ++ ++ E+ +++ EE + E E
Sbjct: 670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALE 729
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E + + R ++E E+ +
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEE 755
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 42.4 bits (99), Expect = 4e-04
Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKK----------------KEKKKKEEKKKEK 44
+K K+ KK++KKEK+KE+ K +KK+ E K + +
Sbjct: 197 KKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSG 256
Query: 45 KKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
+ E E ++ EE ++ + ++++++KE+E+K+ ++
Sbjct: 257 TAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHH 301
Score = 38.1 bits (88), Expect = 0.008
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+K + E K +K +KK +K KKKEKK+KE+++ + KKKE E +
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 35.8 bits (82), Expect = 0.034
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 38/135 (28%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKK-KEKKKKEEKKKEKKKKE------------ 48
+ E K +K +KK KK K+K+KK KEK++ ++KKKE + +
Sbjct: 179 RNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPAS 238
Query: 49 ---------------------EEEGEEEEEGEEEGRRR----RRRRRRRRKKEREKKRSS 83
+ E +E ++ E E ++ +++++R+ K+E++KK+
Sbjct: 239 AASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKH 298
Query: 84 RRKPFKLSEISATRP 98
S+ A +P
Sbjct: 299 HHHRCHHSDGGAEQP 313
Score = 32.3 bits (73), Expect = 0.53
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K E+++ +++ +K K +KKK+EK+K+ ++ E +E
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDE 123
Score = 32.0 bits (72), Expect = 0.60
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + K E ++ KK K KK+K++KEK++KK+KKK + E+ + EE
Sbjct: 262 EPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAVEE 321
Query: 61 E 61
E
Sbjct: 322 E 322
Score = 31.6 bits (71), Expect = 0.75
Identities = 10/42 (23%), Positives = 28/42 (66%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
K E++++ +++ EK K+++KK+++EK+ ++ +E+
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDED 124
Score = 31.6 bits (71), Expect = 0.77
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
EK +K + K EK +KK KK K+++KKEK+K+ +++ ++E EG +
Sbjct: 171 EKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 31.6 bits (71), Expect = 0.79
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+ + ++ K+ + E+ KK K K+KK++KEK++K++KKK + E+ + G
Sbjct: 259 PDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNG 317
Score = 31.2 bits (70), Expect = 1.0
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE 38
++E++ ++ EK K+EKKK+EK+K+ ++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRHHS 116
Score = 29.3 bits (65), Expect = 4.8
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
K +E+++ +++ +K K +KKK +K+K+ +++ E
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTE 120
Score = 28.9 bits (64), Expect = 6.4
Identities = 8/32 (25%), Positives = 24/32 (75%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE 33
+++ + +++ ++ K+EKKK+EK+K+ +++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRHHS 116
Score = 28.5 bits (63), Expect = 6.7
Identities = 8/39 (20%), Positives = 26/39 (66%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE 39
E+++ +++ +K +++K+K++KEK+ + + + E+
Sbjct: 86 EERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDED 124
Score = 28.5 bits (63), Expect = 6.7
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 60 EEGRRRRRR--RRRRRKKEREKKRSSRRK 86
EE RR R+R + +R KK+REK++ RR+
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRR 113
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 41.9 bits (99), Expect = 4e-04
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+E ++E ++E K+ + +KE + EKK ++K KK KK + ++ EE E E E E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEPP 127
Query: 64 RRRR 67
R R
Sbjct: 128 LRPR 131
Score = 38.8 bits (91), Expect = 0.003
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E+ +E+ +E+ KE + +++ + +KK EKK K+ KK K ++ E E E EE
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEPP 127
Query: 65 RRRR 68
R R
Sbjct: 128 LRPR 131
Score = 37.2 bits (87), Expect = 0.012
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ +E+ +E+ KE + EK+ E +KK +KK +K K+ K +E +E E E EE E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE--PE 125
Query: 61 EGRRRR 66
R R
Sbjct: 126 PPLRPR 131
Score = 36.1 bits (84), Expect = 0.025
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
E+ +E+ +E+ K+ + +KE + ++K +++ KK KK ++EE EE E E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEPP 127
Query: 69 RRRR 72
R R
Sbjct: 128 LRPR 131
Score = 34.9 bits (81), Expect = 0.059
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
+E ++E ++E K+ E +K+ + +K+ +K+ KK KK K+EE EE E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEPP 127
Query: 68 RRRR 71
R R
Sbjct: 128 LRPR 131
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 40.5 bits (95), Expect = 4e-04
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E++ + E++ + + + KEKKK+E K K +K+K + + +K K
Sbjct: 102 EEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 40.1 bits (94), Expect = 5e-04
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E E ++E E K E K+K+K++ K K +++K K E KK K K
Sbjct: 104 ESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Score = 39.0 bits (91), Expect = 0.001
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
++ +++ + K + KEKKK+E K + +K+K K + ++ K K K
Sbjct: 107 DETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 37.8 bits (88), Expect = 0.003
Identities = 13/48 (27%), Positives = 30/48 (62%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
E+ +E+ ++ +++ + K E K+K+K++ + K ++EK K + KK
Sbjct: 99 EETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
Score = 34.3 bits (79), Expect = 0.036
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
E++ E++ + E++ + K E K+KK+++ + K +++K K E
Sbjct: 98 EEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 34.0 bits (78), Expect = 0.053
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
E +E++ E++ + +++ E K + ++KKK E K K +KE+ + E
Sbjct: 90 ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 30.9 bits (70), Expect = 0.58
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
++ + E++ + K + K+KK+ + + K ++E+ E
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 30.1 bits (68), Expect = 0.99
Identities = 10/53 (18%), Positives = 32/53 (60%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
E+++ E++ ++ ++++ + + + KEKKK+E + + E+E + ++ +
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 27.8 bits (62), Expect = 6.9
Identities = 11/52 (21%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK---KKKEEEEGEEEEEGEE 60
++++E +++ + E++ E K + ++KK++ K K E+E + E +
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The
family functions as a highly conserved exonuclease that
is required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing
and export.
Length = 134
Score = 40.0 bits (94), Expect = 4e-04
Identities = 19/61 (31%), Positives = 47/61 (77%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+K+++++K +E+ KEK+++E+ ++ K+ ++E+K++ EK+ +++K+ + EEE + EE+
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEED 88
Query: 62 G 62
Sbjct: 89 A 89
Score = 38.1 bits (89), Expect = 0.001
Identities = 22/63 (34%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKK--KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
++++K +E+ KEK++E++ +E+K+ +E+K++ EK+ KE K+ K +EE + EE+ E E
Sbjct: 33 QRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETE 92
Query: 60 EEG 62
+
Sbjct: 93 DTE 95
Score = 36.2 bits (84), Expect = 0.008
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 23/95 (24%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKE--------KKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
KKK+ KK+ +E ++ +KE K+++++K ++E K+KE++++ EE
Sbjct: 1 KKKKAKKKGVEEVVFDKEARKEYLTGFHKRKQQRRKKAQEEAKEKEREERIEE------- 53
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
R+R R RK+E EK+ R++ KL E
Sbjct: 54 --------RKRIREERKQELEKQLKERKEALKLLE 80
Score = 30.8 bits (70), Expect = 0.54
Identities = 15/64 (23%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKK---KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
EK++E++ E++K ++E+K+ K+ K++++ K +++ ++++ + + E+ ++E E
Sbjct: 44 EKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWE 103
Query: 58 GEEE 61
G E
Sbjct: 104 GFPE 107
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts
as a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell
wall integrity. Gad8p is a downstream target of Tor1p,
the fission yeast homolog of mTOR. It plays a role in
cell growth and sexual development.
Length = 312
Score = 41.8 bits (98), Expect = 4e-04
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 41/174 (23%)
Query: 105 YQARQPTRQLVMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYS 164
Y+ +P L+ YQ + +CDFGL ++ D +K T T Y APE+L+G Y+
Sbjct: 116 YRDLKPENILLDYQGHIA--LCDFGLCKLNMKDDDKTNTF-CGTPEYLAPELLLG-HGYT 171
Query: 165 AAVDVWSVGCIFAELL-GRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLR 223
AVD W++G + E+L G + ++ + L P DG
Sbjct: 172 KAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFP---------DGFD----- 217
Query: 224 QTRKSQSLSSLYSLSSQATGEAVHLLVQMLYFDPTKRISVNSA---LCHPYLDE 274
+A LL+ +L DPT+R+ N A HP+ +
Sbjct: 218 -------------------RDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQ 252
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Phosphoinositide-dependent
kinase 1. Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 41.4 bits (98), Expect = 4e-04
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSN 390
+L+YLHS I+HRD+KP N+L++ +
Sbjct: 114 ALEYLHSKGIIHRDLKPENILLDKD 138
Score = 33.7 bits (78), Expect = 0.12
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 20/86 (23%)
Query: 124 KICDFGLARVEEPD---------------PNKAMTQE----VVTQYYRAPEILMGARHYS 164
KI DFG A+V +P+ + + V T Y +PE+L
Sbjct: 142 KITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEK-PAG 200
Query: 165 AAVDVWSVGCIFAELLGRRILFQAQS 190
+ D+W++GCI ++L + F+ +
Sbjct: 201 KSSDLWALGCIIYQMLTGKPPFRGSN 226
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 41.7 bits (98), Expect = 4e-04
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 1 EKKKEKKKEKKKEK-------KKEKKKKEKKKKEKKKKKEKKKKEEKK----KEKKKKEE 49
EK K KK K+ + KK K E ++K K +K + K K
Sbjct: 45 EKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPS 104
Query: 50 EEGEEEEEGEE 60
E EEEEE EE
Sbjct: 105 TESEEEEEPEE 115
Score = 32.5 bits (74), Expect = 0.36
Identities = 28/115 (24%), Positives = 34/115 (29%), Gaps = 25/115 (21%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEK------------KKKEKKKKKEKKKKEEKKKEKK--K 46
EK KK +K K + E K K KK KE + + KK K
Sbjct: 11 EKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKSSK 70
Query: 47 KEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDST 101
E EE + R K E RSS K S S +
Sbjct: 71 PTESSAASSEEKPAKPR-----------KSAESTRSSHPKSKAPSTESEEEEEPE 114
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 41.0 bits (96), Expect = 4e-04
Identities = 21/57 (36%), Positives = 38/57 (66%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E+ K K+KEKK+ ++ +K+ E+ + EK ++ +++EKKKE ++ +EE E EE
Sbjct: 146 EELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEE 202
Score = 39.5 bits (92), Expect = 0.001
Identities = 25/61 (40%), Positives = 42/61 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+++ E+ K K+KEKK+ ++ EK+ +E + +K+ +K ++KEKKK+ EE EE EE E
Sbjct: 142 QERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLE 201
Query: 61 E 61
E
Sbjct: 202 E 202
Score = 39.1 bits (91), Expect = 0.002
Identities = 17/57 (29%), Positives = 39/57 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K K K+K+++ E+ +++ ++ + +K+ +K ++K+++K+ E+ K+E EE EE E
Sbjct: 148 LKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
Score = 37.2 bits (86), Expect = 0.008
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
++ ++ K K K+K+++ +E +K+ ++ + EK E+ +EK+KK+E E +EE
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEE 195
Score = 35.2 bits (81), Expect = 0.029
Identities = 18/55 (32%), Positives = 39/55 (70%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+E+ +E K ++K++K++ E+ +KE ++ +++K EK E+K+K++E E +EE
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEE 195
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 41.9 bits (99), Expect = 4e-04
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK-KKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
K + +++ KKK KK K K + K+E K+ E KK+ ++ ++
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMV 63
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRKP 87
++ ++K + K ++ + P
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAP 91
Score = 41.5 bits (98), Expect = 6e-04
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KKK K K K KKK K + + KK EKK +K + ++ + + + ++
Sbjct: 75 PKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDD 134
Query: 61 E 61
+
Sbjct: 135 D 135
Score = 41.5 bits (98), Expect = 6e-04
Identities = 12/103 (11%), Positives = 42/103 (40%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E E++ +KK +K K K + +++ K+ + K++ ++ + ++ ++
Sbjct: 9 ELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDD 68
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTID 103
+++ + + ++ +K K S+ + +
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNA 111
Score = 41.1 bits (97), Expect = 9e-04
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK+ K K K KK+ K + KK +KK K + ++ + ++
Sbjct: 74 IPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDD 133
Query: 61 E 61
+
Sbjct: 134 D 134
Score = 40.4 bits (95), Expect = 0.001
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
E KKK K K K KKK + + KK +++ +K
Sbjct: 71 ESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLN 119
Score = 39.6 bits (93), Expect = 0.002
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K + +KK + + KK EKK +K K+ + + +++++ +++
Sbjct: 82 AAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDD 141
Score = 39.6 bits (93), Expect = 0.002
Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++ +KK +K K K K K+E K+ E KKK ++ ++ ++ +
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFIT--KEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDAT 70
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTID 103
E +++ + K K + ++ +L + +D
Sbjct: 71 ESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALD 113
Score = 39.6 bits (93), Expect = 0.002
Identities = 7/61 (11%), Positives = 29/61 (47%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ +KK + + + KK +KK K + ++ + ++++ +++++ +++
Sbjct: 86 AAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDD 145
Query: 62 G 62
Sbjct: 146 D 146
Score = 39.6 bits (93), Expect = 0.003
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K + E KKK + K K KKK + + + KK E++ +++
Sbjct: 59 LSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKD 115
Score = 39.2 bits (92), Expect = 0.003
Identities = 10/60 (16%), Positives = 27/60 (45%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K K KK+ K E +K +K+ K+ K + + +++ +++++ + +
Sbjct: 84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLD 143
Score = 39.2 bits (92), Expect = 0.003
Identities = 17/93 (18%), Positives = 32/93 (34%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+ + ++E KKK KK K K K KEE K+ + K++ + ++
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSG 61
Query: 64 RRRRRRRRRRKKEREKKRSSRRKPFKLSEISAT 96
+ +KK + K +
Sbjct: 62 MVKDTDDATESDIPKKKTKTAAKAAAAKAPAKK 94
Score = 39.2 bits (92), Expect = 0.003
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ + K+K K K K KK+ K + + KK EKK K ++ ++ + +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQ 129
Score = 38.8 bits (91), Expect = 0.004
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + + +KK + K K KKK K + + KK +KK ++ ++ ++
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKD 123
Score = 38.4 bits (90), Expect = 0.005
Identities = 10/61 (16%), Positives = 26/61 (42%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + K KKK K + + KK +KK K + + + +++++ ++
Sbjct: 80 KTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDD 139
Query: 61 E 61
+
Sbjct: 140 D 140
Score = 38.4 bits (90), Expect = 0.005
Identities = 12/60 (20%), Positives = 25/60 (41%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K K K K+K K E +K +KK K++ K + ++++ +++
Sbjct: 79 TKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDD 138
Score = 38.1 bits (89), Expect = 0.007
Identities = 12/59 (20%), Positives = 25/59 (42%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+ E KKK K K K +KK K E ++ +K+ ++++ ++ +
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDID 125
Score = 37.7 bits (88), Expect = 0.011
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KK+ K K K KKK K + KK E+K K + ++ + +
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQA 130
Score = 37.3 bits (87), Expect = 0.012
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K KK+ K E KK ++K +K K + + ++++ +++ + ++
Sbjct: 88 AKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDI 147
Score = 37.3 bits (87), Expect = 0.014
Identities = 20/105 (19%), Positives = 37/105 (35%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KKK KK K + K K+E K+ + KKK ++ ++ ++ + E
Sbjct: 16 AKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIP 75
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGY 105
+ + + + K +KK K +E Y
Sbjct: 76 KKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNY 120
Score = 36.9 bits (86), Expect = 0.016
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K K K + +KK K++ KK +K+ ++ K + + +++ +++
Sbjct: 78 KTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDD 137
Score = 36.5 bits (85), Expect = 0.022
Identities = 8/60 (13%), Positives = 25/60 (41%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K KKK K + +K +K+ + K + + ++++ ++ ++ + +
Sbjct: 89 KAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDID 148
Score = 31.5 bits (72), Expect = 0.85
Identities = 11/103 (10%), Positives = 37/103 (35%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K K K K+E K+ + K+K ++ + K + + + ++ + +
Sbjct: 25 AKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAK 84
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTID 103
+ +++ + + K++ ++ + D +
Sbjct: 85 AAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVL 127
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 41.6 bits (98), Expect = 4e-04
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
K+ +K ++K K K K E+ KKE+ + +KKKE+K K +++ +
Sbjct: 348 KRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 41.6 bits (98), Expect = 5e-04
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
++E +K +K K+K K K K E+ KK+ + KKKEKK K E G +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 40.8 bits (96), Expect = 0.001
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
EK KEK + + K E+ KKE+ + ++KKKEKK K E++ +
Sbjct: 351 EKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 37.8 bits (88), Expect = 0.007
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ EK+ EK K++ K K K E+ KKE + ++KK+E++ + E G +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 36.6 bits (85), Expect = 0.018
Identities = 14/49 (28%), Positives = 31/49 (63%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
++ EK+ EK KEK + K K +++KK++ + ++++K+K+ K +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERR 391
Score = 36.2 bits (84), Expect = 0.023
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRK 74
++E +K+ +K KEK K K K E+ K+++ GR RR+++ ++ K
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERP---------------GRYRRKKKEKKAK 387
Query: 75 KEREKKRS 82
ER ++
Sbjct: 388 SERRGLQN 395
Score = 34.3 bits (79), Expect = 0.11
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
++E +K+ EK K++ K K K E R ++ R R R+K++EKK
Sbjct: 340 ISLREELEKRIEKLKEKPPKPPTKAKPE-------------RDKKERPGRYRRKKKEKKA 386
Query: 82 SSRRK 86
S R+
Sbjct: 387 KSERR 391
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 39.5 bits (93), Expect = 5e-04
Identities = 16/39 (41%), Positives = 31/39 (79%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K + + K+EKKK+ K+KKE++K+++++ K++KKK K +
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 36.8 bits (86), Expect = 0.004
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK 34
K+EKKK K++K++EK++K + K++KKK K +
Sbjct: 97 RNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 34.9 bits (81), Expect = 0.017
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 1 EKKKEKKKEKKKEKKK-----EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K KK+KK K+ K+ K+ K ++ K + E K+EKKK+ +E+ EEE
Sbjct: 54 AVKVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEE 113
Query: 56 EEGEEEGRRRRRRRRRRRKKEREKKR 81
+E R+R+ +++K++ K R
Sbjct: 114 KE---------RKRQLKQQKKKAKHR 130
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a
role in cell cycle regulation and programmed cell death
in many cell types.
Length = 316
Score = 41.3 bits (97), Expect = 5e-04
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFG+ + KA T T Y APEIL G + Y+ +VD WS G + E+L
Sbjct: 136 KIADFGMCKENMNGEGKASTF-CGTPDYIAPEILKGQK-YNESVDWWSFGVLLYEML 190
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 39.7 bits (93), Expect = 5e-04
Identities = 18/66 (27%), Positives = 40/66 (60%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRR 71
+ K+ E +KK K+K + K K KK++ EK+KEK+++ + E E+ E +++ +
Sbjct: 58 ESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKL 117
Query: 72 RRKKER 77
+++++
Sbjct: 118 MKEEKK 123
Score = 38.9 bits (91), Expect = 0.001
Identities = 18/59 (30%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK---EKKKKEEEEGEEEEE 57
+KK K+K ++ + K +K++ EK+K+++++ + + EK++ EKKK E + +EE++
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 37.0 bits (86), Expect = 0.004
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K KEK + K + KK+E +K+++K+++ K E +KE+ + E+++ E + EE+
Sbjct: 67 KAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEK 122
Score = 33.1 bits (76), Expect = 0.100
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK--EEKKKEKKKKEEEE 51
EK + K + KKE+ +++K+KE++ + + EK++ E+KK E K +EE+
Sbjct: 70 EKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEK 122
Score = 31.2 bits (71), Expect = 0.46
Identities = 16/54 (29%), Positives = 35/54 (64%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ K+ E +K+ K++ ++ + K K+++ +KEK+K+E K + E+E E E++
Sbjct: 58 ESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKK 111
Score = 29.6 bits (67), Expect = 1.5
Identities = 15/48 (31%), Positives = 33/48 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+ K +K++ +K+++K+E+ K + EK++ + +KKK E K K++K+
Sbjct: 76 KLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 27.7 bits (62), Expect = 6.7
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKK--------------EKKKKEEKKKEKKKK 47
K + K K K+ E KK KKK+K+ E K+ E +KK K+K
Sbjct: 13 KNEPKWKSKRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKL 72
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
++ + ++E E E + + R + E EK+R
Sbjct: 73 RRDKLKAKKE-EAEKEKEKEERFMKALAEAEKER 105
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 39.9 bits (93), Expect = 5e-04
Identities = 25/87 (28%), Positives = 57/87 (65%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK+ EK+ +K+ K KE +K EKKKK ++KK+ K+++++++E+E + ++E E+
Sbjct: 43 EKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEK 102
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKP 87
+++++ R R++++ K++ +P
Sbjct: 103 IELSKKKQKERERRRKKLTKKTKSGQP 129
Score = 36.0 bits (83), Expect = 0.010
Identities = 24/84 (28%), Positives = 51/84 (60%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
KKE K +KE +K+ +K+ K K+++K +++KK ++KK+ ++ + E+ +E
Sbjct: 35 KKEYLKLLEKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELA 94
Query: 63 RRRRRRRRRRRKKEREKKRSSRRK 86
+R++ + K+++K+R RRK
Sbjct: 95 KRQKELEKIELSKKKQKERERRRK 118
Score = 30.6 bits (69), Expect = 0.78
Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKE-----KKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
KK ++ K KE ++ KK + KKE +K+ +KE +K+ K +E+ E++
Sbjct: 12 GKKFTREYKVKEIQRNLTKKARLKKEYLKLLEKEGYAVPEKESAEKQVKSSKEDRKFEKK 71
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQLVM 116
+ +E + ++R+R ++++ KR + +LS+ + + + Q +M
Sbjct: 72 KKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKSGQPLM 131
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 41.7 bits (99), Expect = 5e-04
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+K EK + K KK K K K++ EK K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 39.4 bits (93), Expect = 0.003
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK 37
+ K KK K +K K++ EK K
Sbjct: 822 RYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 39.0 bits (92), Expect = 0.004
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+K EK + K+ K+ K +K K++ EK +
Sbjct: 815 AEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 33.2 bits (77), Expect = 0.25
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
+K EK + K KK K K K++ E++G
Sbjct: 814 LAEKPEKLRYLADAPAKD--PAGKKAAVKFSRKTKQQYVASEKDG 856
Score = 32.5 bits (75), Expect = 0.41
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
E+ E EK +K + + K KK K +K K+
Sbjct: 808 EEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQ 847
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 42.0 bits (99), Expect = 5e-04
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E+ + K E +E + E+K +E K++ E + E ++ E + +E E EE E + E R
Sbjct: 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
Query: 65 RRRRRRRRRKK---------EREKKRSSRRKPFKLSEISA 95
+ + + E +R R+ EI
Sbjct: 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
Score = 38.5 bits (90), Expect = 0.007
Identities = 19/86 (22%), Positives = 43/86 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++K+ +E+ +++ ++ E + +E + K ++ +E + E+K +E +E E E E
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E R +E E++ + R
Sbjct: 361 EELEAELEELESRLEELEEQLETLRS 386
Score = 37.0 bits (86), Expect = 0.017
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEK-----KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+++ +K E+ KE K E ++ E + +E +++ E+ ++E K+ E++ +E +E
Sbjct: 206 ERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQEL 265
Query: 57 EGEEEGRRRRRRRRRRRKKEREKK 80
E + E R +E +K+
Sbjct: 266 EEKLEELRLEVSELEEEIEELQKE 289
Score = 35.4 bits (82), Expect = 0.059
Identities = 18/85 (21%), Positives = 38/85 (44%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+K E+ +EK E +K + K+ +E +++ E+ +KE ++ ++ + E E
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
E R + + E E +
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELE 767
Score = 28.5 bits (64), Expect = 7.4
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE-KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
E+ E + E ++ ++ E+ + E + E+ EE + + EE EE E E
Sbjct: 848 EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
Query: 60 EEGRRRRRRRRRRRKK 75
+ RR R+K
Sbjct: 908 SKRSELRRELEELREK 923
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 41.7 bits (99), Expect = 6e-04
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ + + ++K +E + K+ EK K+E ++KKEK + EE+ K ++ E+E + +E ++
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ-EEEDKLLEEAEKEAQQAIKEAKK 584
Query: 61 EGRRRRRRRRRRRKKE----REKKRSSRRK 86
E + R+ +K + + RK
Sbjct: 585 EADEIIKELRQLQKGGYASVKAHELIEARK 614
Score = 38.7 bits (91), Expect = 0.006
Identities = 23/89 (25%), Positives = 49/89 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K+ EK KE+ +EKK++ +++E K E+ +K+ ++ +E KKE + +E + ++ G
Sbjct: 543 LKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYA 602
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
+ R+R + +K+ ++K K
Sbjct: 603 SVKAHELIEARKRLNKANEKKEKKKKKQK 631
Score = 36.3 bits (85), Expect = 0.030
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 29/89 (32%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKK-----KKE------------------------KKKK 31
E+KKEK +E++ + +E +K+ ++ KKE + +
Sbjct: 554 EEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEAR 613
Query: 32 KEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K K EKK++KKKK++E+ EE + G+E
Sbjct: 614 KRLNKANEKKEKKKKKQKEKQEELKVGDE 642
Score = 34.8 bits (81), Expect = 0.095
Identities = 23/95 (24%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 1 EKKK---EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
EK K E+KKEK +E++ + ++ +K+ ++ K+ KK+ +E KE ++ ++ +
Sbjct: 547 EKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKA 606
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
E R+R + +K++++KK+ +++ K+ +
Sbjct: 607 HELIEARKRLNKANEKKEKKKKKQKEKQEELKVGD 641
Score = 30.6 bits (70), Expect = 1.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K + E +K K +KK++KKKK+++K++E K ++ K
Sbjct: 599 GGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVK 644
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 40.8 bits (96), Expect = 6e-04
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSN 390
K L+YLHS +HRDIK GN+L+ +
Sbjct: 113 KGLEYLHSNGQIHRDIKAGNILLGED 138
Score = 34.6 bits (80), Expect = 0.068
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 122 SSKICDFGL-ARVEEP--DPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAE 178
S KI DFG+ A + + K V T + APE++ Y D+WS G E
Sbjct: 140 SVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIE 199
Query: 179 L 179
L
Sbjct: 200 L 200
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors including
the Pad-1 protein (N. crassa), CAPER (M. musculus) and
CC1.3 (H.sapiens). These proteins are characterized by
an N-terminal arginine-rich, low complexity domain
followed by three (or in the case of 4 H. sapiens
paralogs, two) RNA recognition domains (rrm: pfam00706).
These splicing factors are closely related to the U2AF
splicing factor family (TIGR01642). A homologous gene
from Plasmodium falciparum was identified in the course
of the analysis of that genome at TIGR and was included
in the seed.
Length = 457
Score = 41.4 bits (97), Expect = 6e-04
Identities = 19/115 (16%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ +E+ + + ++ +K ++ +++ + + + +++++ ++
Sbjct: 3 RDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRS---------R 53
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQ--ARQPTRQL 114
R R R R R+ +RS R L+E A R D T+ Q + R L
Sbjct: 54 SPNRYYRPRGDRSYRRDDRRSGRNTKEPLTE--AERDDRTVFVLQLALKARERDL 106
Score = 35.6 bits (82), Expect = 0.035
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 30 KKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR-----RRRRKKEREKKRSSR 84
+ +++++ + ++ + E + RRRR R RR R + R R R
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 85 RKPFKLSEISATRP 98
+ + R
Sbjct: 61 PRGDRSYRRDDRRS 74
Score = 29.5 bits (66), Expect = 3.3
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQ 109
R R R R R R R + R + +R D Y+ R+
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRR 47
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 39.9 bits (94), Expect = 6e-04
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE-EEGEEEGRRRRRRRRRRRKKEREKK 80
KKK KK KKEK+K+ ++ ++ ++E ++ EE + E R R R+R+ E E+K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
Score = 37.2 bits (87), Expect = 0.006
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 12/59 (20%)
Query: 2 KKKEKK--KEKKKEKKKEKKKKE----------KKKKEKKKKKEKKKKEEKKKEKKKKE 48
KKK KK KEK+K++K+ +K + ++ K +K +++++ +++ E ++K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKA 72
Score = 36.0 bits (84), Expect = 0.014
Identities = 15/58 (25%), Positives = 34/58 (58%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSR 84
+KK KK KK+K +++K+ +K ++ +E ++ EE + + R R ++R+ + +
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 40.1 bits (94), Expect = 7e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
K+ +KK+ +K KK KKK +EK E++KK E + ++ EE E
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENE 94
Score = 37.4 bits (87), Expect = 0.006
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+ KKK K KK KK+ K+K ++++K + ++++ EE E +
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDN 99
Score = 35.9 bits (83), Expect = 0.016
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+ KK++ +K KK KKK KEK +EEKK E + EE E + + EE
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEE 102
Score = 34.4 bits (79), Expect = 0.067
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+ KK++ +K K+ KKK+K+K E++KK E +K ++ E + + EE
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEE 102
Score = 33.6 bits (77), Expect = 0.098
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE---GEEEEEGEEE 61
K+ +KK+ K KK K+K K+K +++++ + + K EE E EE G+ +
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQ 107
Query: 62 G 62
Sbjct: 108 E 108
Score = 33.2 bits (76), Expect = 0.12
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+ ++ KK +KK KEK +E+KK + K E+ + EE G+ +E
Sbjct: 54 KRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
Score = 32.8 bits (75), Expect = 0.19
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KKK +K K+ KKK+K+K +++KK + ++ K E+ + + + EE + +E
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEEKKP--ESDDDKTEENENDPDNNEESGDSQES 109
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion, making it important in neural development and
plasticity, cell morphogenesis, cell-fate determination,
embryonic development, tissue patterning, and
angiogenesis. The EphA2 receptor is overexpressed in
tumor cells and tumor blood vessels in a variety of
cancers including breast, prostate, lung, and colon. As
a result, it is an attractive target for drug design
since its inhibition could affect several aspects of
tumor progression.
Length = 268
Score = 40.7 bits (95), Expect = 7e-04
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 105 YQARQPTRQLVMYQATYSSKICDFGLARVEEPDPNKAMTQE--VVTQYYRAPEILMGARH 162
Y R + ++ + K+ DFGL+RV E DP T + + APE + R
Sbjct: 128 YVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAI-AYRK 186
Query: 163 YSAAVDVWSVGCIFAELL 180
+++A DVWS G + E++
Sbjct: 187 FTSASDVWSFGIVMWEVM 204
Score = 29.9 bits (67), Expect = 1.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+KYL +HRD+ N+LVNSN K
Sbjct: 120 MKYLSDMNYVHRDLAARNILVNSNLECK 147
>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of
cAMP-dependent protein kinase-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), Fission yeast Suppressor of loss of
cAMP-dependent protein kinase (Sck1)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sck1-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of fungal proteins
with similarity to the Schizosaccharomyces pombe STK
Sck1. Sck1 plays a role in trehalase activation
triggered by glucose and a nitrogen source. Trehalase
catalyzes the cleavage of the disaccharide trehalose to
glucose. Trehalose, as a carbohydrate reserve and stress
metabolite, plays an important role in the response of
yeast to environmental changes.
Length = 330
Score = 41.1 bits (96), Expect = 7e-04
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
++ AT +CDFGL++ D NK T Y APE+L+ + Y+ VD WS+G
Sbjct: 127 ILLDATGHIALCDFGLSKANLTD-NKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGV 185
Query: 175 IFAEL 179
+ E+
Sbjct: 186 LVFEM 190
Score = 30.3 bits (68), Expect = 1.7
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSN 390
+L++LH I++RD+KP N+L+++
Sbjct: 108 ALEHLHKYDIVYRDLKPENILLDAT 132
>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional.
Length = 391
Score = 41.1 bits (96), Expect = 7e-04
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 352 RVPLC--INPQSAAFKSLKYLHSARILHRDIKPGNLLVN 388
+ +C + + + ++++YLH RI+HRDIK N+ +N
Sbjct: 178 NIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFIN 216
Score = 32.7 bits (74), Expect = 0.35
Identities = 40/165 (24%), Positives = 56/165 (33%), Gaps = 44/165 (26%)
Query: 153 APEILMGARH-YSAAVDVWSVGCIFAEL-LGRRILFQAQ------SPVQQLGLITDLLGT 204
APE+L AR Y AVD+WS G + E+ LF+ +Q+ LI GT
Sbjct: 251 APELL--ARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGT 308
Query: 205 --------PTPEEMRHACDGAKCHMLRQTRKSQS---LSSLYSLSSQATGEAVHLLVQML 253
AK + +RK S ++LY L + +L+ +ML
Sbjct: 309 HPNEFPIDAQANLDEIYIGLAK----KSSRKPGSRPLWTNLYELPI----DLEYLICKML 360
Query: 254 YFDPTKRISVNSALCHPYLDEGRLRFHSCMCKCCYTTPSPTSPPT 298
FD R S + L P P P
Sbjct: 361 AFDAHHRPSAEALLDFAAF---------------QDIPDPYPNPM 390
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 40.7 bits (95), Expect = 7e-04
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 33/149 (22%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFG++R+ + A T T YY +PE L + Y + D+WS+GCI E+
Sbjct: 145 KIGDFGVSRLLMGSCDLATTF-TGTPYYMSPEAL-KHQGYDSKSDIWSLGCILYEMCCLA 202
Query: 184 ILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATG 243
F+ Q+ L ++ ++ PTP SL YS +
Sbjct: 203 HAFEGQN---FLSVVLRIVEGPTP----------------------SLPETYSRQLNS-- 235
Query: 244 EAVHLLVQMLYFDPTKRISVNSALCHPYL 272
++ ML DP+ R S L +P++
Sbjct: 236 ----IMQSMLNKDPSLRPSAAEILRNPFI 260
Score = 31.1 bits (70), Expect = 0.76
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 369 YLHSARILHRDIKPGNLLVNSNCILK 394
Y+H RILHRD+K N+ + +N +LK
Sbjct: 121 YMHQRRILHRDLKAKNIFLKNN-LLK 145
>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 4.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 4, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK4 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK4 regulates cell morphology and
cytoskeletal organization. It is essential for embryonic
viability and proper neural development. Mice lacking
PAK4 die due to defects in the fetal heart. In addition,
their spinal cord motor neurons showed failure to
differentiate and migrate. PAK4 also plays a role in
cell survival and tumorigenesis. It is overexpressed in
many primary tumors including colon, esophageal, and
mammary tumors. PAK4 has also been implicated in viral
and bacterial infection pathways.
Length = 292
Score = 40.8 bits (95), Expect = 8e-04
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 33/150 (22%)
Query: 124 KICDFGL-ARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
K+ DFG A+V + P + V T Y+ APE L+ Y VD+WS+G + E++
Sbjct: 156 KLSDFGFCAQVSKEVPRRKSL--VGTPYWMAPE-LISRLPYGPEVDIWSLGIMVIEMVDG 212
Query: 183 RILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQAT 242
+ + P++ + +I D L L +L+ +S
Sbjct: 213 EPPYFNEPPLKAMKMIRDNL-------------------------PPKLKNLHKVSPSLK 247
Query: 243 GEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
G L ++L DP +R + L HP+L
Sbjct: 248 G----FLDRLLVRDPAQRATAAELLKHPFL 273
>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK
kinase (MEK) subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1
and MEK2 are dual-specificity PKs that phosphorylate and
activate the downstream targets, ERK(extracellular
signal-regulated kinase) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1/2, and finally to ERK1/2. The ERK
cascade plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. This cascade has also been
implicated in synaptic plasticity, migration,
morphological determination, and stress response
immunological reactions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1/2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 308
Score = 40.9 bits (96), Expect = 8e-04
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 362 AAFKSLKYLHSAR-ILHRDIKPGNLLVNSN 390
A + L YL I+HRD+KP N+LVNS
Sbjct: 107 AVLRGLTYLREKHKIMHRDVKPSNILVNSR 136
Score = 35.1 bits (81), Expect = 0.044
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVV-TQYYRAPEILMGARHYSAAVDVWSVGCIFAELL-G 181
K+CDFG++ + D +M V T+ Y +PE L G HY+ D+WS+G E+ G
Sbjct: 140 KLCDFGVSG-QLID---SMANSFVGTRSYMSPERLQGT-HYTVQSDIWSLGLSLVEMAIG 194
Query: 182 R 182
R
Sbjct: 195 R 195
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 40.3 bits (94), Expect = 8e-04
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFG AR+ P V T YY PEI Y+ D+WS+GCI EL +
Sbjct: 140 KLGDFGSARLLT-SPGAYACTYVGTPYYVPPEIWENMP-YNNKSDIWSLGCILYELCTLK 197
Query: 184 ILFQAQS 190
FQA S
Sbjct: 198 HPFQANS 204
Score = 34.2 bits (78), Expect = 0.079
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 333 VQQVKEEMHKFIAEQLNTSR-VPLCINPQSAAFKSLKYLHSARILHRDIKPGNLLVNSNC 391
+Q++K + K E V +C+ ++++H R+LHRDIK N+ + N
Sbjct: 86 MQKIKLQRGKLFPEDTILQWFVQMCL--------GVQHIHEKRVLHRDIKSKNIFLTQNG 137
Query: 392 ILK 394
+K
Sbjct: 138 KVK 140
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 40.6 bits (96), Expect = 8e-04
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 5 EKKKEKKKEKKKEK-KKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E+ KE K+E K KKE K K +KK++K++ + K K K
Sbjct: 47 EQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKP 90
Score = 40.2 bits (95), Expect = 0.001
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
E+ KE K+E K +K+ K K +KKK+K++ K + K + +
Sbjct: 47 EQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 36.3 bits (85), Expect = 0.019
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E+ KE K+E K KKE K + +KK+EK++ K K + +
Sbjct: 47 EQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 34.0 bits (79), Expect = 0.10
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 4 KEKKKEKKKE------KKKEKKKKEKKKKEKKKKKEKKK--KEEKKKEKKKKEEEEGEEE 55
++KK +K E ++ K+ KE+ K KKE K K +KKKEK++ + + + +
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 28.6 bits (65), Expect = 5.1
Identities = 13/65 (20%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRS 82
++KK +K + E E+ KE K++ + +++E + + +++++K+ K
Sbjct: 31 QRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKE-----LKAWHKAQKKKEKQEAKAAK 85
Query: 83 SRRKP 87
++ KP
Sbjct: 86 AKSKP 90
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 39.6 bits (93), Expect = 9e-04
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K + K K + ++ + KE KK+EK+ KE KK KK + KK + + +E + +
Sbjct: 90 SMKSRLKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSK 149
Query: 62 GRRRRRRRRRRRKKEREKK 80
+ ++R++ +EKK
Sbjct: 150 QLDKALEKKRKKNAGKEKK 168
Score = 36.1 bits (84), Expect = 0.011
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
++KE ++ +K KK K+ ++KE+ K+ + K K K K E E +E + +E+
Sbjct: 59 DYREKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKEL 118
Query: 64 RRRRRRRRRRKKEREKKR 81
+ ++ KK KK
Sbjct: 119 IKEGKKPYYLKKSEIKKL 136
Score = 34.6 bits (80), Expect = 0.044
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 15/77 (19%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KE KK++K+ K+ KK KK E KK KKK +E KK K+
Sbjct: 106 EILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLD------------- 152
Query: 61 EGRRRRRRRRRRRKKER 77
+ ++R++ KE+
Sbjct: 153 --KALEKKRKKNAGKEK 167
Score = 29.9 bits (68), Expect = 1.3
Identities = 18/78 (23%), Positives = 41/78 (52%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
+ +EK+ E+ +K KK + ++KE+ K+ + + + K + + E E +E +++ +
Sbjct: 58 DDYREKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKE 117
Query: 69 RRRRRKKEREKKRSSRRK 86
+ KK K+S +K
Sbjct: 118 LIKEGKKPYYLKKSEIKK 135
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 41.2 bits (96), Expect = 0.001
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 36 KKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISA 95
KK E+ EK K+E E+ EE E+ + + R R R R+ ER K SS ++SE
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSEPQL 638
Query: 96 TRP 98
+ P
Sbjct: 639 SGP 641
Score = 38.1 bits (88), Expect = 0.009
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
K KK+E+ ++ K++ E+K +EE+++EK+K++E E E E E E +
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 36.6 bits (84), Expect = 0.027
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
KK+E+ EK K ++ E+K +E++++EK+K+KE++++ E++ E+ K E E
Sbjct: 579 KKREEAVEKAK-REAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSE 635
Score = 33.1 bits (75), Expect = 0.28
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K KK ++ EK K+E ++K ++++ EK+KEK+++ E E E E
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 28.9 bits (64), Expect = 5.4
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE----EKKKEKKKKEEE--------EG 52
K + KK KK K++ K K+++EK + E+ KK K +E EG
Sbjct: 57 SKAESTKKPNKKIKEEATSPLKSTKRQREKPASDTEEPERVTAKKSKTQELSRPNSPSEG 116
Query: 53 EEEEEGEEEGRRRR 66
E E EGE E R
Sbjct: 117 EGEGEGEGESSDSR 130
Score = 28.1 bits (62), Expect = 10.0
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K KE+ K K++++K +E ++ KK K ++ E EGE E EGE
Sbjct: 67 KKIKEEATSPLKSTKRQREKPASDTEEPERVTAKKSKTQELSRPNSPSEGEGEGEGEGES 126
Query: 61 EGRR 64
R
Sbjct: 127 SDSR 130
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4;
Provisional.
Length = 191
Score = 39.8 bits (93), Expect = 0.001
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ KK KK+K KKK KK KK KKK++E+ E +E + EE EE ++
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKK-KKKEKEEVPELAAEELSDSEENEENDK 96
Score = 38.6 bits (90), Expect = 0.002
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
KK KK+K +KK+ KK KKKK++K++ + EE ++ +E ++ + E + +
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQN 107
Score = 37.9 bits (88), Expect = 0.004
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ KK KKK+ ++KK +K KKK+K+K+E + ++ + E EE +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEEND 95
Score = 37.5 bits (87), Expect = 0.005
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ KK KKK+ ++KK K+ KKK+++K+E + EE + EE EE
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEEN 94
Score = 37.1 bits (86), Expect = 0.008
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK KKK+ KKK KK +KKKKEK++ E +E E+ ++ +++ + E +
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQ 106
Score = 34.4 bits (79), Expect = 0.051
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+ KK KKK+ +K+K K+ KKK+K+K+E E EE + E
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEE 90
Score = 34.0 bits (78), Expect = 0.070
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KKK ++KK KK +KKKKEK++ + +E EE ++ KK + E + + E
Sbjct: 53 KKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEV 112
Score = 29.8 bits (67), Expect = 1.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE-KKKEKKKKEEEEGEEEEEGEE 60
KKK KK KKK+K+K+E + ++ + ++ EE KK + + + E E
Sbjct: 56 TTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHE 115
Query: 61 E 61
+
Sbjct: 116 D 116
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 40.2 bits (94), Expect = 0.001
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFG+ARV A T + T YY +PEI R Y+ D+W++GC+ E+ +
Sbjct: 141 KLGDFGIARVLNSTVELARTC-IGTPYYLSPEICEN-RPYNNKSDIWALGCVLYEMCTLK 198
Query: 184 ILFQA 188
F+A
Sbjct: 199 HAFEA 203
Score = 31.0 bits (70), Expect = 0.82
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+LK++H +ILHRDIK N+ + + +K
Sbjct: 113 ALKHVHDRKILHRDIKSQNIFLTKDGTIK 141
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 40.6 bits (95), Expect = 0.001
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+K + + K+K + K+K E K K E K EK K E+ +
Sbjct: 201 KKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAA 256
Score = 39.8 bits (93), Expect = 0.002
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG--- 58
K+ EK++ +E+KK+ ++ K+ K+K+ E+ + K K E E
Sbjct: 104 KQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKA 163
Query: 59 EEEGRRRRRRRRRRRKKEREKKR 81
E +++ ++ KK+
Sbjct: 164 AAEAKKKAEAEAAKKAAAEAKKK 186
Score = 38.6 bits (90), Expect = 0.004
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+KK E + +KK + K+K E K K E K +K + E+ +
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAA 257
Score = 37.9 bits (88), Expect = 0.007
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
KK + +KK E + +K E KKK E + + E KKK E E +++ E + +
Sbjct: 161 KKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAA 220
Query: 66 RRRRRRRRKKEREKKRSSRRK 86
+ K E K ++ +
Sbjct: 221 AEAKAAAAKAAAEAKAAAEKA 241
Score = 37.5 bits (87), Expect = 0.010
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
E KK+ E KK+ E K K + K +K K EK + E
Sbjct: 206 EAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
Score = 37.5 bits (87), Expect = 0.011
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK---------KKEKKKKEEEE 51
E+KK+ ++ K+ K+K+ +E K K K + E K E KKK E E
Sbjct: 115 EQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAE 174
Query: 52 GEEEEEGE 59
++ E
Sbjct: 175 AAKKAAAE 182
Score = 37.1 bits (86), Expect = 0.013
Identities = 17/81 (20%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE-EEEGEE 60
K+ E++++KK++++ E+ ++++ ++++ K+ +K++ +++KK+ EE + ++ +
Sbjct: 75 KRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQA 134
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
E + + K E E KR
Sbjct: 135 EEAAAKAAAAAKAKAEAEAKR 155
Score = 36.3 bits (84), Expect = 0.021
Identities = 21/86 (24%), Positives = 36/86 (41%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KK+ + E K+ E KKK + + K E KKK E + +KK E + + E +
Sbjct: 166 EAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKA 225
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
+ + +K K + +
Sbjct: 226 AAAKAAAEAKAAAEKAAAAKAAEKAA 251
Score = 36.3 bits (84), Expect = 0.022
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK---EKKKKEEEEGEEEEEG 58
K + K+K + + +K E KKK + + K E KKK E KKK E +++
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAA 221
Query: 59 EEEGRRRRRRRRRRRKKEREKK 80
E + + + E+
Sbjct: 222 EAKAAAAKAAAEAKAAAEKAAA 243
Score = 35.9 bits (83), Expect = 0.032
Identities = 12/65 (18%), Positives = 41/65 (63%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
++++K K+ E+++KK+++++ E+ ++K+ E+E ++ E+ + ++++ K+
Sbjct: 68 QQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQA 127
Query: 77 REKKR 81
K++
Sbjct: 128 ALKQK 132
Score = 35.6 bits (82), Expect = 0.037
Identities = 13/61 (21%), Positives = 41/61 (67%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+++K K+ +++ KKKE+++ E+ ++++ ++E+ K+ EK++ ++++++ EE +
Sbjct: 69 QQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAA 128
Query: 61 E 61
Sbjct: 129 L 129
Score = 35.6 bits (82), Expect = 0.041
Identities = 14/77 (18%), Positives = 49/77 (63%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
++ ++++++K ++ ++++KKKE+++ +E ++K+ ++E+ K+ E+E +E +++
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Query: 64 RRRRRRRRRRKKEREKK 80
++ ++K+ E
Sbjct: 122 EAAKQAALKQKQAEEAA 138
Score = 34.8 bits (80), Expect = 0.064
Identities = 14/81 (17%), Positives = 36/81 (44%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ +KE+ ++++K+ E+ K+ K+K+ ++ K K K + E + +
Sbjct: 105 QLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAA 164
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
+++ +K E K+
Sbjct: 165 AEAKKKAEAEAAKKAAAEAKK 185
Score = 34.0 bits (78), Expect = 0.12
Identities = 13/71 (18%), Positives = 47/71 (66%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
++ ++++++K K+ +E++KK+E+++ ++ ++++ E+E + E R + ++++ +
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Query: 76 EREKKRSSRRK 86
E K+ + ++K
Sbjct: 122 EAAKQAALKQK 132
Score = 33.6 bits (77), Expect = 0.14
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKE----------KKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
K+K+ ++ K K K E KK + KKK + + +K + KK+ E
Sbjct: 129 LKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAE 188
Query: 51 EGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
+ E ++ +++ E +KK
Sbjct: 189 AEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 32.9 bits (75), Expect = 0.27
Identities = 16/81 (19%), Positives = 39/81 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ ++K+ ++E+ K+ +K+ +E+KK+ E+ K+ K+K+ +E +
Sbjct: 89 AEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
+R +K E K+
Sbjct: 149 AEAEAKRAAAAAKKAAAEAKK 169
Score = 32.9 bits (75), Expect = 0.30
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE-----KKKKEEKKK----EKKKKEEEE 51
K+ K+K+ E+ K K K + + K KK E KK E KK E
Sbjct: 123 AAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
Query: 52 GEEEEEGE 59
+++ E E
Sbjct: 183 AKKKAEAE 190
Score = 32.5 bits (74), Expect = 0.39
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKK---EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+K + K+K + + K E KKK E KKK + K++ E K + E +
Sbjct: 177 KKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKA 236
Query: 58 GEEEGRRRRRRRRRRRKKE 76
E+ + + K
Sbjct: 237 AAEKAAAAKAAEKAAAAKA 255
Score = 28.2 bits (63), Expect = 8.7
Identities = 17/67 (25%), Positives = 42/67 (62%), Gaps = 11/67 (16%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
++++++K K+ EE++K+K++++ EE ++++ E+E R K+ EK+R + +
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQE-----------RLKQLEKERLAAQ 114
Query: 86 KPFKLSE 92
+ K +E
Sbjct: 115 EQKKQAE 121
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 40.8 bits (95), Expect = 0.001
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK K+K++E E ++ KKK+E+++K +++++++K+EE ++ +++EE+ +EE
Sbjct: 203 EKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEI--- 259
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
RRR +R+K E S +KPFK
Sbjct: 260 --ERRRAEAAEKRQKVPEDGLSEDKKPFK 286
Score = 35.4 bits (81), Expect = 0.042
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKK-EKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
E K+ +K K+K+++ + +E KKK E+++K EE E+ + EE R+ R +RR K
Sbjct: 197 EAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLK 256
Query: 76 EREKKR 81
E ++R
Sbjct: 257 EEIERR 262
Score = 31.9 bits (72), Expect = 0.57
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK------------------KKEEKKK 42
+K+EK+ E ++E+K ++ E+ E K K K+ EK K
Sbjct: 147 CQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLK 206
Query: 43 EKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSR 84
+K+++ E EE ++ EE RR+ +R+K+ E R SR
Sbjct: 207 QKQQEAALELEELKKKREE-RRKVLEEEEQRRKQEEADRKSR 247
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 3.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 3, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK3 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK3 is
highly expressed in the brain. It is implicated in
neuronal plasticity, synapse formation, dendritic spine
morphogenesis, cell cycle progression, neuronal
migration, and apoptosis. Inactivating mutations in the
PAK3 gene cause X-linked non-syndromic mental
retardation, the severity of which depends on the site
of the mutation.
Length = 297
Score = 40.1 bits (93), Expect = 0.001
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 122 SSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLG 181
S K+ DFG P+ +K T V T Y+ APE++ + Y VD+WS+G + E++
Sbjct: 153 SVKLTDFGFCAQITPEQSKRSTM-VGTPYWMAPEVVT-RKAYGPKVDIWSLGIMAIEMVE 210
Query: 182 RRILFQAQSPVQQLGLITDLLGTP---TPEEM 210
+ ++P++ L LI GTP PE +
Sbjct: 211 GEPPYLNENPLRALYLIAT-NGTPELQNPERL 241
Score = 30.1 bits (67), Expect = 1.7
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLV 387
++L +LHS +++HRDIK N+L+
Sbjct: 125 LQALDFLHSNQVIHRDIKSDNILL 148
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 37.4 bits (87), Expect = 0.001
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K K K KK + KKK+KKKK+K K KE+ E++++EK E + E EE+ + E
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEK 63
Score = 35.9 bits (83), Expect = 0.004
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
K K K+ +KKK KKKK+K K +++ EK+++E+ E KE EE E+ E+ E+E
Sbjct: 11 KLKGKKIDVKKKK-KKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEED 69
Query: 64 RRRRRRRRRRKKEREKKR 81
R +E ++KR
Sbjct: 70 GMNLTEAERAFEEAQRKR 87
Score = 35.5 bits (82), Expect = 0.007
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE- 60
K K+ +KKK+KKK+K K +++ +K+++EK E KE ++ E+ E E+EE
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGMN 72
Query: 61 --EGRRRRRRRRRRRKKE 76
E R +R+R KE
Sbjct: 73 LTEAERAFEEAQRKRLKE 90
Score = 35.1 bits (81), Expect = 0.008
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRR 73
K K K +K +KKKKK+KKK + K++ +KEEEE E +EG + +
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQ 66
Query: 74 KKEREKKRSSRRK 86
+++ + R
Sbjct: 67 EEDGMNLTEAERA 79
Score = 34.3 bits (79), Expect = 0.013
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE----EEE 56
+ KK+KKK+KKK K KE+ EK+++EK + K+ E+ ++ +K E+EE E E
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGMNLTEAE 77
Query: 57 EGEEEGRRRR 66
EE +R+R
Sbjct: 78 RAFEEAQRKR 87
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 40.2 bits (94), Expect = 0.001
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNS 389
+L+YLH+ I+HRD+KP NLL+ S
Sbjct: 113 ALEYLHNYGIVHRDLKPDNLLITS 136
Score = 34.8 bits (80), Expect = 0.064
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 124 KICDFGLARV-------------EEPDPNKAMTQEVV-TQYYRAPEILMGARHYSAAVDV 169
K+ DFGL+++ E D + + ++V T Y APE+++ + Y VD
Sbjct: 141 KLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVIL-RQGYGKPVDW 199
Query: 170 WSVGCIFAELLGRRILFQAQSPVQQLG-LITDLLGTPTPEE 209
W++G I E L + F +P + G +I+D + P +E
Sbjct: 200 WAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDE 240
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 40.7 bits (95), Expect = 0.001
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K + ++K KEK +K+ K E E + + K+ EE +
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
Score = 38.4 bits (89), Expect = 0.007
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K + K+K KEK +K+ K + E + + K++++K +
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDA 837
Score = 37.6 bits (87), Expect = 0.013
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK-------KEKKKKEEEEGE 53
+ K+K K+K ++ K E E + ++ K+ E+K KKK+ + +
Sbjct: 794 AARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKVD 852
Score = 36.5 bits (84), Expect = 0.028
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
K + K+K K+K KE K + + E ++ K++E+K +
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
Score = 34.9 bits (80), Expect = 0.069
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K + ++K KEK ++ K E E + + + EE+G +
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDA 837
Score = 30.7 bits (69), Expect = 1.8
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 1 EKKKEKK-KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK 40
E K E E + E+ K+++EK KKKK K
Sbjct: 810 EIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYK 850
Score = 30.3 bits (68), Expect = 1.9
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 20 KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREK 79
K + K+K K+K KE K + + E E ++ EE+G ++KK +
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKV 851
Query: 80 KRSSRRKPFKLSEIS 94
+R P + IS
Sbjct: 852 DNMTRILPQQSRYIS 866
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 1.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 1, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK1 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK1 is
important in the regulation of many cellular processes
including cytoskeletal dynamics, cell motility, growth,
and proliferation. Although PAK1 has been regarded
mainly as a cytosolic protein, recent reports indicate
that PAK1 also exists in significant amounts in the
nucleus, where it is involved in transcription
modulation and in cell cycle regulatory events. PAK1 is
also involved in transformation and tumorigenesis. Its
overexpression, hyperactivation and increased nuclear
accumulation is correlated to breast cancer invasiveness
and progression. Nuclear accumulation is also linked to
tamoxifen resistance in breast cancer cells.
Length = 296
Score = 40.1 bits (93), Expect = 0.001
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 122 SSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLG 181
S K+ DFG P+ +K + V T Y+ APE++ + Y VD+WS+G + E++
Sbjct: 154 SVKLTDFGFCAQITPEQSK-RSTMVGTPYWMAPEVVT-RKAYGPKVDIWSLGIMAIEMIE 211
Query: 182 RRILFQAQSPVQQLGLITDLLGTP---TPEEM 210
+ ++P++ L LI GTP PE++
Sbjct: 212 GEPPYLNENPLRALYLIAT-NGTPELQNPEKL 242
Score = 30.8 bits (69), Expect = 1.2
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLV 387
++L++LHS +++HRDIK N+L+
Sbjct: 126 LQALEFLHSNQVIHRDIKSDNILL 149
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 39.6 bits (93), Expect = 0.001
Identities = 26/55 (47%), Positives = 44/55 (80%), Gaps = 4/55 (7%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE----KKKKEEKKKEKKKKEEEEG 52
K+KEK+K+K K++ KE+K+K +KKK +++KK KK+K++KK +KKKK +++G
Sbjct: 149 KRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKG 203
Score = 39.2 bits (92), Expect = 0.001
Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK--KKKEEKKKEKKKKEEEEGEEEEEG 58
E+ E K + +EK+K K K + K K EK KK ++K+++KKK ++E +E +E
Sbjct: 109 EELDEDKAAEIEEKEKWTKALAKAEGVKVKDDEKLLKKALKRKEKQKKKSKKEWKERKEK 168
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E+ + R+++R K+R+ + +++K
Sbjct: 169 VEKKKAERQKKREENLKKRKDDKKNKKK 196
Score = 36.9 bits (86), Expect = 0.008
Identities = 23/83 (27%), Positives = 51/83 (61%), Gaps = 9/83 (10%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE------ 55
+++ +K+E++K +KK+K+K+ KKK++ +K + ++ K E+ K KKK E E
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSK 68
Query: 56 ---EEGEEEGRRRRRRRRRRRKK 75
+GE+ + + ++++++KK
Sbjct: 69 VEFADGEQAKKDLKLKKKKKKKK 91
Score = 31.1 bits (71), Expect = 0.64
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
E+ K+ K KKK+KKKK K+ KK + +KKK E+ E K E EE E
Sbjct: 74 GEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKE 123
Score = 29.6 bits (67), Expect = 2.3
Identities = 11/54 (20%), Positives = 32/54 (59%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
E++++K +++K KK+++K+ +++E ++ E EE + +++ E +
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEG 62
Score = 29.2 bits (66), Expect = 2.8
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 1 EKKKEKKKEKKKEKKKEK------KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
E+ K+ K KKK+KKK+ KK E +KK+ ++ E K E ++KEK K + E
Sbjct: 75 EQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKALAKAEG 134
Query: 55 EEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+ ++E ++ +R+ ++K++ KK RK
Sbjct: 135 VKVKDDEKLLKKALKRKEKQKKKSKKEWKERK 166
Score = 28.4 bits (64), Expect = 5.2
Identities = 12/47 (25%), Positives = 32/47 (68%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ ++++ K+++++ +KK+++K+ KKK++ ++ E EE EE
Sbjct: 1 PSSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEE 47
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 40.1 bits (93), Expect = 0.001
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 122 SSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLG 181
S K+ DFG P+ +K T V T Y+ APE++ + Y VD+WS+G + E++
Sbjct: 153 SVKLTDFGFCAQITPEQSKRSTM-VGTPYWMAPEVVT-RKAYGPKVDIWSLGIMAIEMVE 210
Query: 182 RRILFQAQSPVQQLGLITDLLGTP---TPEEM 210
+ ++P++ L LI GTP PE++
Sbjct: 211 GEPPYLNENPLRALYLIAT-NGTPELQNPEKL 241
Score = 28.9 bits (64), Expect = 3.9
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLV 387
++L++LH+ +++HRDIK N+L+
Sbjct: 125 LQALEFLHANQVIHRDIKSDNVLL 148
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST3, MST4,
STK25, Schizosaccharomyces pombe Nak1 and Sid1,
Saccharomyces cerevisiae sporulation-specific protein 1
(SPS1), and related proteins. Nak1 is required by
fission yeast for polarizing the tips of actin
cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Sid1 is a component in the septation initiation network
(SIN) signaling pathway, and plays a role in
cytokinesis. SPS1 plays a role in regulating proteins
required for spore wall formation. MST4 plays a role in
mitogen-activated protein kinase (MAPK) signaling during
cytoskeletal rearrangement, morphogenesis, and
apoptosis. MST3 phosphorylates the STK NDR and may play
a role in cell cycle progression and cell morphology.
STK25 may play a role in the regulation of cell
migration and polarization.
Length = 274
Score = 39.9 bits (94), Expect = 0.001
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSN 390
L+YLH +HRDIK N+L++
Sbjct: 109 LGLEYLHEEGKIHRDIKAANILLSEE 134
Score = 31.4 bits (72), Expect = 0.76
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
K+ DFG++ +K T V T ++ APE++ + Y D+WS+G EL
Sbjct: 138 KLADFGVSGQLTSTMSKRNTF-VGTPFWMAPEVIKQSG-YDEKADIWSLGITAIELA 192
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 40.3 bits (94), Expect = 0.001
Identities = 17/80 (21%), Positives = 38/80 (47%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KK+ ++ K ++ + K + K+K + + K E+ K E + K + E + E EE
Sbjct: 168 EAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEE 227
Query: 61 EGRRRRRRRRRRRKKEREKK 80
+ +++ + K ++
Sbjct: 228 KAAAEKKKAAAKAKADKAAA 247
Score = 38.0 bits (88), Expect = 0.007
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K ++ + K E KKK E + K +K + + + + K EKK + E + E ++
Sbjct: 176 AAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKK 235
Query: 61 EGRRRRRRRRRRRKKEREKK 80
+ + + K E+K
Sbjct: 236 AAAKAKADKAAAAAKAAERK 255
Score = 38.0 bits (88), Expect = 0.007
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+ K E + + K EKK E +EK EKKK K K ++ K E +
Sbjct: 206 KAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAA 259
Score = 37.2 bits (86), Expect = 0.012
Identities = 22/82 (26%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 2 KKKEKKKEKKKEKKKEK-KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK E++++KK+E+ E+ K K+ ++E+ K+ EK++ + ++++K+ +E E+ + E+ ++
Sbjct: 75 KKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQ 134
Query: 61 EGRRRRRRRRRRRKKEREKKRS 82
E + R+ +++K E K ++
Sbjct: 135 EEQARKAAAEQKKKAEAAKAKA 156
Score = 36.9 bits (85), Expect = 0.016
Identities = 17/80 (21%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ K+ +KE+ K ++++K+ +E +K+ + ++K+++++ K ++KK+ E + +
Sbjct: 101 ERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAE--AAKAKAAA 158
Query: 61 EGRRRRRRRRRRRKKEREKK 80
E + + ++K E K
Sbjct: 159 EAAKLKAAAEAKKKAEEAAK 178
Score = 36.5 bits (84), Expect = 0.020
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K K + + K + K+K ++ K +E K K E KKK E E E+ +
Sbjct: 150 EAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKA 209
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E + + ++ EK + ++K
Sbjct: 210 EAEAKAKAEKKAEAAAEEKAAAEKKK 235
Score = 35.3 bits (81), Expect = 0.042
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE- 59
+ + E+K+++++ +K ++K+K + K K + K + E KKK EE + EE +
Sbjct: 126 QAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKA 185
Query: 60 --EEGRRRRRRRRRRRKKEREKKRSSRRK 86
E +++ + + K + K
Sbjct: 186 KAEAAAAKKKAEAEAKAAAEKAKAEAEAK 214
Score = 35.3 bits (81), Expect = 0.050
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKE--KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K K + K+K ++ K E K K + K++ + E K E+ E E +
Sbjct: 157 AAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAK 216
Query: 61 EGRRRRRRRRRRRKKEREKK 80
++ + E++K
Sbjct: 217 AEKKAEAAAEEKAAAEKKKA 236
Score = 34.9 bits (80), Expect = 0.072
Identities = 16/78 (20%), Positives = 48/78 (61%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
++ + + ++ +K ++++KKKE++ +E K K+ ++E+ K+ E+E + +E +++
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAE 121
Query: 64 RRRRRRRRRRKKEREKKR 81
++ + +K++ E+ R
Sbjct: 122 EAEKQAQLEQKQQEEQAR 139
Score = 33.8 bits (77), Expect = 0.16
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
EK K + + K K +KK + E+K +KKK K K +K K E +
Sbjct: 205 EKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAA 259
Score = 33.4 bits (76), Expect = 0.17
Identities = 11/85 (12%), Positives = 48/85 (56%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K K+ ++++ ++ ++++ K ++++++ ++ EK+ + E+K+++++ + E++++ E
Sbjct: 93 KPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAA 152
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRK 86
+ + + KK++
Sbjct: 153 KAKAAAEAAKLKAAAEAKKKAEEAA 177
Score = 31.1 bits (70), Expect = 1.1
Identities = 15/76 (19%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ + ++ K+ ++++KKKE++ E+ K K+ ++E+ K+ +K+ + E++++ EE
Sbjct: 65 GRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQ-AAEQERLKQLEKERLKAQEQQKQAEEA 123
Query: 62 GRRRRRRRRRRRKKER 77
++ + ++++ ++ R
Sbjct: 124 EKQAQLEQKQQEEQAR 139
Score = 28.4 bits (63), Expect = 7.8
Identities = 17/69 (24%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
+ + ++ KK ++++KKKEE+ E+ K ++ E+E + E R + + ++++ +E
Sbjct: 65 GRIQSQQSSAKKGEQQRKKKEEQVAEELKP-KQAAEQERLKQLEKERLKAQEQQKQAEEA 123
Query: 78 EKKRSSRRK 86
EK+ +K
Sbjct: 124 EKQAQLEQK 132
>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) and Nuclear
Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK- and NDR-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include ROCK and
ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
as NDR and NDR-like proteins such as LATS, CBK1 and
Sid2p. ROCK and CRIK are effectors of the small GTPase
Rho, while MRCK is an effector of the small GTPase
Cdc42. NDR and NDR-like kinases contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. Proteins in this subfamily are involved in
regulating many cellular functions including
contraction, motility, division, proliferation,
apoptosis, morphogenesis, and cytokinesis.
Length = 350
Score = 40.0 bits (94), Expect = 0.001
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 112 RQLVMYQATYSSKICDFGLARVEEPDPNKAMTQEVV-TQYYRAPEILMGARHYSAAVDVW 170
+ +++ D L R + + V T Y APE+L G Y D W
Sbjct: 156 DREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRG-TPYGLECDWW 214
Query: 171 SVGCIFAELLGRRILFQAQSPVQ 193
S+G I E+L F + + +
Sbjct: 215 SLGVILYEMLYGFPPFYSDTLQE 237
Score = 34.2 bits (79), Expect = 0.11
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 17/59 (28%)
Query: 330 LTSVQQVKEEMHKF-IAEQLNTSRVPLCINPQSAAFKSLKYLHSARILHRDIKPGNLLV 387
L EE +F IAE + L ++ +H +HRDIKP N+L+
Sbjct: 92 LIRKDVFPEETARFYIAE------LVLALD----------SVHKLGFIHRDIKPDNILI 134
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
(MEKK1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK1 activates the extracellular
signal-regulated kinase 1/2 (ERK1/2) and c-Jun
N-terminal kinase (JNK) pathways by activating their
respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
MEKK1 is important in regulating cell survival and
apoptosis. MEKK1 also plays a role in cell migration,
tissue maintenance and homeostasis, and wound healing.
Length = 268
Score = 39.5 bits (92), Expect = 0.002
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 124 KICDFGLARVEEPDPNKA---MTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
+I DFG A A Q + T + APE+L G Y + DVWSVGC+ E+
Sbjct: 144 RIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRG-EQYGRSCDVWSVGCVIIEMA 202
Query: 181 GRRILFQAQSPVQQLGLITDL---LGTPT-PEEMRHA 213
+ + A+ L LI + P+ PE +
Sbjct: 203 TAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPG 239
Score = 37.5 bits (87), Expect = 0.007
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 367 LKYLHSARILHRDIKPGNLLVNS 389
L YLH +I+HRD+K NLL++S
Sbjct: 116 LSYLHENQIIHRDVKGANLLIDS 138
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 39.9 bits (94), Expect = 0.002
Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK---KKKEKK-KKEEKKKEKKKKEEEEGEEEE 56
KKE E K+E K + + E++ KE++ ++ E++ + E+ ++K + ++ EE
Sbjct: 47 TLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENL 106
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISA 95
E +E+ + + +++E E+ + +R+ +L IS
Sbjct: 107 EKKEKELSNKEKNLDEKEEELEELIAEQRE--ELERISG 143
Score = 37.2 bits (87), Expect = 0.014
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K+ +K+ ++ K+ E+ KKE + K++ E K++ K + E E E +E E
Sbjct: 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQ 79
Query: 63 RRRRRRRRRR----RKKEREKKR 81
R RR +R RK E K+
Sbjct: 80 RLERRLLQREETLDRKMESLDKK 102
Score = 35.7 bits (83), Expect = 0.042
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK--KKKEEKKKEKKKKEEEEGEEEEEGE 59
K+ +KK E+ ++ +E KK+ + KKE + KEE K + + E E E E +
Sbjct: 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQ 79
Query: 60 EEGRRRRRR-----RRRRRKKEREKKRSSRRK 86
RR +R R+ ++E+ + K
Sbjct: 80 RLERRLLQREETLDRKMESLDKKEENLEKKEK 111
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 40.1 bits (94), Expect = 0.002
Identities = 16/85 (18%), Positives = 20/85 (23%), Gaps = 6/85 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K EK EK K + + K E +
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181
Query: 61 EGRRRRRRRR------RRRKKEREK 79
R R R R+R ER K
Sbjct: 182 VARADPRETRVPMSRMRQRIAERLK 206
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 38.9 bits (91), Expect = 0.002
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E K K E+ E+ + K+E+ + EKK+ KKKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 37.3 bits (87), Expect = 0.007
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1 EKKKEKKKEK--KKEKKKEKKKKEKKKKEKKKKKEKKKK 37
E K K E+ +E + KE++ E +KK+ KKKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 34.6 bits (80), Expect = 0.044
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
E K K E+ ++ + ++++ E +KKE KKK+
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 40.0 bits (94), Expect = 0.002
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRS 82
EE ++ K +++E+ +++++ ++ R R RRRR++E E+KR+
Sbjct: 135 EEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRA 179
Score = 33.8 bits (78), Expect = 0.17
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
+E+ + + E+++ +++++ R RRRRRR+ E ++
Sbjct: 137 DEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAE 180
Score = 31.1 bits (71), Expect = 0.98
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
+ E+ E++++ +++ R R R++ R + R
Sbjct: 142 KSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRA 179
Score = 30.0 bits (68), Expect = 2.4
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 48 EEEEGEEEEEGEEEGRRR-----RRRRRRRRKKEREKKRSSRRK 86
E+EE + E+ E++ R R ++ R ++ +R
Sbjct: 136 EDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRA 179
Score = 30.0 bits (68), Expect = 3.0
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
EE+E + E +E+ ++ ++R RR+ +
Sbjct: 135 EEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAE 180
>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C delta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), delta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta
plays a role in cell cycle regulation and programmed
cell death in many cell types. It slows down cell
proliferation, inducing cell cycle arrest and enhancing
cell differentiation. PKC-delta is also involved in the
regulation of transcription as well as immune and
inflammatory responses. It plays a central role in the
genotoxic stress response that leads to DNA
damaged-induced apoptosis.
Length = 316
Score = 39.5 bits (92), Expect = 0.002
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFG+ + N+A T T Y APEIL G + Y+ +VD WS G + E+L
Sbjct: 136 KIADFGMCKENVFGDNRASTF-CGTPDYIAPEILQGLK-YTFSVDWWSFGVLLYEML 190
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 39.5 bits (92), Expect = 0.002
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 355 LCINPQSAAFKSLKYLHSARILHRDIKPGNLLVNS 389
L I + + L+YLH+ RI+HRD+K N+ +N
Sbjct: 160 LII--EKQILEGLRYLHAQRIIHRDVKTENIFIND 192
Score = 37.2 bits (86), Expect = 0.012
Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 33/167 (19%)
Query: 125 ICDFGLARVEEPDPNK---AMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLG 181
I D G A+ P A T E APE+L + Y++ D+WS G + E+L
Sbjct: 198 IGDLGAAQFPVVAPAFLGLAGTVET-----NAPEVLARDK-YNSKADIWSAGIVLFEMLA 251
Query: 182 R-RILFQ-----AQSPV-----QQLGLITDLL-------GTPTPEEMRHACDGAKCHMLR 223
+F+ + V L +I+ L P +R + A R
Sbjct: 252 YPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLE--R 309
Query: 224 QTRKSQSLSSLYSLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHP 270
Q +L GE L+ +ML FD R S L +P
Sbjct: 310 QPYTRYPCFQRVNL--PIDGE--FLVHKMLTFDAAMRPSAEEILNYP 352
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 37.0 bits (86), Expect = 0.002
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK--------KKKEEKKKEKKKKEEEEGE 53
K E K++ K KKE K K K+ K KK + EK K KK K++ +
Sbjct: 7 TKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKG 66
Query: 54 EEEEGEE 60
+ EG
Sbjct: 67 CKWEGNT 73
Score = 31.6 bits (72), Expect = 0.15
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K+ K + + ++K K K++ + K K+ K KK + E E+ + +++
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Score = 30.1 bits (68), Expect = 0.52
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+K K + + KEK K +KK+ + K K K+ K ++ G +
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTET 49
Score = 29.7 bits (67), Expect = 0.78
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 1 EKKKEKKKEKKKEKKKEKK----------KKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+KK++ K K KE K +K + +K + KK K+ KK K + K
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNTCK 75
Score = 27.8 bits (62), Expect = 3.0
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+K K K + ++K + KK++ K + K+ + KK + +
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEK 53
Score = 27.8 bits (62), Expect = 3.3
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
KK + K + K+K + KKE+ K K K+ + + + G + + +K ++
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 78 EKK 80
+ K
Sbjct: 62 DCK 64
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 39.7 bits (93), Expect = 0.002
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKK------KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
K+K KK+ KK KK + + +E + K+ KKK++KKK+KKKK E +
Sbjct: 17 NKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYD 76
Score = 39.7 bits (93), Expect = 0.002
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKK---------KEKKKKKEKKKKEEKKKEKKKKEEEEG 52
+ K++K++ K++ K+K KK KK + + +E + K+ KK+KKKK++++
Sbjct: 9 EVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKK 68
Query: 53 EEEEEGEE 60
+ E +
Sbjct: 69 KNLGEAYD 76
Score = 37.0 bits (86), Expect = 0.015
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 1 EKKKEKKKEKKKEKKK---------EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+ K++ K+K K+ KK + E ++ E K+ +KKKK++KKK+KK E
Sbjct: 16 QNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75
Query: 52 GEEEEEGEEE 61
+
Sbjct: 76 DLAYDLPVVW 85
Score = 37.0 bits (86), Expect = 0.015
Identities = 19/110 (17%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
+ E + K++K++ K+K +KK K+ KK E E E ++ ++++
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60
Query: 71 RRRKKEREKKRSSRRKPFK---LSEISATRPDST----IDGYQARQPTRQ 113
+++KK+++K + SA D++ + + ++ +
Sbjct: 61 KKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLGNWPEQEWKQT 110
Score = 33.9 bits (78), Expect = 0.14
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKK-------------------EKKKKEEKKK 42
E + + K++K++ K+K KKK KK KK E K+ +KKK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60
Query: 43 EKKKKEEEEGEEEEEG 58
+KKKK++++ E
Sbjct: 61 KKKKKKKKKNLGEAYD 76
Score = 33.1 bits (76), Expect = 0.24
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
E E ++ + K+ K+KKKK+KKKK+K + + ++
Sbjct: 42 ELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNS 94
Score = 31.6 bits (72), Expect = 0.68
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK--KKEEKKKEKKKKEEE 50
+ + +E + ++ +KKKK+KKKK+KK E + ++
Sbjct: 41 AELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQD 92
Score = 29.3 bits (66), Expect = 4.0
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+ + +E + ++ K+KKKK+KKKKK+ + ++
Sbjct: 41 AELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQD 92
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 37.2 bits (87), Expect = 0.002
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 36 KKEEKKKEKKKKEEEEGEEEEEGEE 60
E+KKE++++EEE+ E EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 34.2 bits (79), Expect = 0.022
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEGE 59
EEKK+E++++EE+E EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 34.2 bits (79), Expect = 0.023
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 30 KKKEKKKKEEKKKEKKKKEEEEGEE 54
E+KK+EE+++E+K++ EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 33.8 bits (78), Expect = 0.033
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEEG 62
E+KK+EEEE EE+EE EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEEA 97
Score = 33.0 bits (76), Expect = 0.050
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 37 KEEKKKEKKKKEEEEGEEEEEGEEEG 62
++K+++++EEEE EE EE G
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 31.5 bits (72), Expect = 0.22
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEE 61
++KKEEEE EEE+E EE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEE 95
Score = 30.7 bits (70), Expect = 0.37
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGE 53
+EKK++EE+++EK++ EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 30.3 bits (69), Expect = 0.44
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEEG 62
+EKK++EEEE E+EE EE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEEAA 98
Score = 30.3 bits (69), Expect = 0.48
Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 32 KEKKKKEEKKKEKKKKEEEEGEEEEEG 58
++K+E+++E+++KEE E EE G
Sbjct: 75 AAAEEKKEEEEEEEEKEESE-EEAAAG 100
Score = 28.4 bits (64), Expect = 2.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEE 39
E+KK+E+++++EK++ EE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEE 95
Score = 27.6 bits (62), Expect = 4.8
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 13 EKKKEKKKKEKKKKEKKKKKE 33
E+KK+E++++E+K++ E
Sbjct: 74 AAAAEEKKEEEEEEEEKEESE 94
Score = 26.8 bits (60), Expect = 7.6
Identities = 8/17 (47%), Positives = 16/17 (94%)
Query: 1 EKKKEKKKEKKKEKKKE 17
EKK+E+++E++KE+ +E
Sbjct: 79 EKKEEEEEEEEKEESEE 95
Score = 26.8 bits (60), Expect = 7.9
Identities = 6/22 (27%), Positives = 17/22 (77%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKE 22
E+KKE+++E++++++ +E
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEE 95
Score = 26.8 bits (60), Expect = 9.5
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKE 27
E+KKE+++E+++KE+ ++E
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 26.5 bits (59), Expect = 9.6
Identities = 8/22 (36%), Positives = 18/22 (81%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKE 22
+EKK+E+++E++KE+ ++E
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 39.2 bits (92), Expect = 0.002
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
E + EKK++ K++ KKKK K+ K K K+ K KK
Sbjct: 244 AESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 38.1 bits (89), Expect = 0.005
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK 37
E + EKK++ K+E KK+K K+ K K KK K K
Sbjct: 245 ESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMK 281
Score = 37.7 bits (88), Expect = 0.006
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
E + EKK++ K+E KKK K KE K K KK K +K
Sbjct: 244 AESRAEKKRKSKEEIKKK--KPKESKGVKALKKVVAKGMKK 282
Score = 37.7 bits (88), Expect = 0.007
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK--EEKKKEKKKKEEEEG 52
K+ KKK+++ E+ E + +KK K K++ KKKK E K + KK +G
Sbjct: 226 YLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKG 279
Score = 35.8 bits (83), Expect = 0.027
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE-KKKKEEKKKEKKKK 47
+K++ ++ + E + EKK+K K++ +KKK KE K K KK K
Sbjct: 233 KKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGM 280
Score = 32.3 bits (74), Expect = 0.36
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK 36
+KK K KE+ K KKK K+ K K +K K KK
Sbjct: 249 EKKRKSKEEIK-KKKPKESKGVKALKKVVAKGMKK 282
Score = 32.3 bits (74), Expect = 0.38
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKK--EKKKKK 32
EKK++ K+E KK+K KE K + KK K KK
Sbjct: 249 EKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 32.3 bits (74), Expect = 0.40
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+ K +K ++ K+KK++ ++ E + + +KK++ K++ KKKK
Sbjct: 216 LIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKK 262
Score = 31.5 bits (72), Expect = 0.69
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K +K ++ K+KK+E ++ + + + +KK K K+E KKK+ K+
Sbjct: 220 FKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKES 266
Score = 30.8 bits (70), Expect = 1.3
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
E K K K+ +KKK+E ++ + + +KK + K+E KKK+
Sbjct: 215 LLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKK 262
Score = 30.4 bits (69), Expect = 1.4
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+ KE KK+K++ ++ E + +KK++ K++ +KKK K+ K
Sbjct: 222 PLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESK 267
Score = 30.4 bits (69), Expect = 1.5
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K+ K E K K ++ KK+K++ +E + E + EKK+K +EE ++++ E
Sbjct: 207 LYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKES 266
Query: 61 EGRR 64
+G +
Sbjct: 267 KGVK 270
Score = 30.4 bits (69), Expect = 1.5
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+ KE KK+K++ E+ + + + EKK+K +++ +KKK +E +G +
Sbjct: 222 PLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKAL 272
Score = 30.0 bits (68), Expect = 1.9
Identities = 15/68 (22%), Positives = 31/68 (45%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
+ KE K E K +K K+ KKKK E +++ + E ++ + EE +++ +
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 68 RRRRRRKK 75
+ +
Sbjct: 265 ESKGVKAL 272
Score = 28.5 bits (64), Expect = 5.8
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K+ K E K +K KE KKKK + +++ + E + +++ + +EE
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEI------ 258
Query: 63 RRRRRRRRRRRKKEREKK 80
++++ + + + KK
Sbjct: 259 --KKKKPKESKGVKALKK 274
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis,
and related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 39.0 bits (91), Expect = 0.002
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 362 AAFKSLKYLHSA-RILHRDIKPGNLLVNS 389
A + L YL++ RI+HRDIKP N+LVNS
Sbjct: 111 AVVEGLTYLYNVHRIMHRDIKPSNILVNS 139
Score = 34.8 bits (80), Expect = 0.063
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+CDFG V N V T Y +PE + G + Y+ DVWS+G EL +
Sbjct: 144 KLCDFG---VSGELINSIADTFVGTSTYMSPERIQGGK-YTVKSDVWSLGISIIELALGK 199
Query: 184 ILFQAQ--------SPVQQLGLITDLLGTPTP 207
F P+ L L+ ++ P P
Sbjct: 200 FPFAFSNIDDDGQDDPMGILDLLQQIVQEPPP 231
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 39.3 bits (92), Expect = 0.002
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
KK+KKK+KK KK K KK K+ K + K KK + ++ +KK K
Sbjct: 255 VKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 35.4 bits (82), Expect = 0.033
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+ K +KKK+KKKK KK K KK K+++ + K KK + E
Sbjct: 246 AAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRE 293
Score = 34.3 bits (79), Expect = 0.081
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K K+KKK+KKK KK K KK K+++ + K +K + +++
Sbjct: 250 ANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
Score = 33.9 bits (78), Expect = 0.13
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
K KKK+KKK+K KK K KK K++K K K+ +++E+ +K+
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKK 298
Score = 33.5 bits (77), Expect = 0.14
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
+KKK+KK KK K K+ K++K + K KK +++++ +KK +
Sbjct: 258 KKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 30.0 bits (68), Expect = 2.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
KK K KK+KKKK+K K+ K K+ K++K
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKA 282
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 38.4 bits (90), Expect = 0.003
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK---KEEKKKEKKKKEEEE 51
+K K+EK KK K + +++KEKKK KEEKK K++KE+ E
Sbjct: 68 RKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLE 120
Score = 36.9 bits (86), Expect = 0.010
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
E++KEKKK KE+KK K++KEK ++ + KEK
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEPYGYCLVDGHKEK 134
Score = 34.2 bits (79), Expect = 0.068
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK 29
E++KEKKK KE+KK K+EK+K E+
Sbjct: 95 EEEKEKKKAMSKEEKK-AIKEEKEKLEEP 122
Score = 33.4 bits (77), Expect = 0.12
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK---KEKKKKEEEEGEEEEE 57
K+ +K KE+K KK K + +++KE+KK KE+KK +EE E+ EE
Sbjct: 65 KDFRKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEE 121
Score = 31.9 bits (73), Expect = 0.41
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK 41
+ +E+K++K K K+EKK KE+K+K E+
Sbjct: 91 YQYFEEEKEKK--KAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 39.4 bits (92), Expect = 0.003
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE------------KKKKKEKKKKEEKKKEKKKKE 48
++ ++K++E KK+ K + E K KK KKKK++KKK +K +
Sbjct: 234 DEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLD 293
Query: 49 EEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E+E E E EG R+ E R++
Sbjct: 294 EDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKE 331
Score = 35.9 bits (83), Expect = 0.034
Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 2 KKKEKKKEKKKEKKKEKKKKE--------------KKKKEKKKKKEKKKKEEKKKEKKKK 47
K +K K+KKK+KKK +K + K ++E + E+ K++K++
Sbjct: 273 VKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEE 332
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
+E++ E++ + + ++RR ++K++
Sbjct: 333 QEDDDFVEDDDDLQASLAKQRRLAQKKRK 361
Score = 33.6 bits (77), Expect = 0.20
Identities = 16/80 (20%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE---EEGRRRR 66
KK++++ E K+K ++ +EK K +K++ K K E+ +++++ + ++ ++R+
Sbjct: 43 KKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQ 102
Query: 67 RRRRRRRKKEREKKRSSRRK 86
+++ RKK + +
Sbjct: 103 KKKEAERKKALLLDEKEKER 122
Score = 32.8 bits (75), Expect = 0.33
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 21/84 (25%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK---------------------KEE 39
+ +K++E+ + K+K ++ +EK K ++K++ K K+
Sbjct: 39 YENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKS 98
Query: 40 KKKEKKKKEEEEGEEEEEGEEEGR 63
KK++KKK+ E + + +E+ R
Sbjct: 99 KKRQKKKEAERKKALLLDEKEKER 122
Score = 32.4 bits (74), Expect = 0.41
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKK------KEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
EKK+++ K+K K + + K KK K++KKK+KK++++ + +E
Sbjct: 237 EKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDEDE 296
Query: 55 EEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEIS 94
E E R+ ++E + S +K + E
Sbjct: 297 LEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEEQEDD 336
Score = 32.0 bits (73), Expect = 0.54
Identities = 12/77 (15%), Positives = 35/77 (45%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
K+KK + ++ +K++++ K+K K + E + + E
Sbjct: 216 KKKKSDNLFTLDSGGSTDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKF 275
Query: 64 RRRRRRRRRRKKEREKK 80
++ +++++++KK R+
Sbjct: 276 KKPKKKKKKKKKRRKDL 292
Score = 31.3 bits (71), Expect = 1.1
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 25/97 (25%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK-----KKEKKKKEEEEG--------- 52
KK KK++KKKE ++K+ ++K+K+ + + K K +E EEG
Sbjct: 96 KKSKKRQKKKEAERKKALLLDEKEKERAAEYTSEDLAGLKVGHKVEEFEEGEDVILTLKD 155
Query: 53 ----EEEEEGEE-------EGRRRRRRRRRRRKKERE 78
E+E+EG+E E + ++ ++KK
Sbjct: 156 TGVLEDEDEGDELENVELVEKEKDKKNLELKKKKPDY 192
Score = 30.5 bits (69), Expect = 1.7
Identities = 15/90 (16%), Positives = 46/90 (51%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K+ + + KK +++ E K+K ++ +++ K EK++ K + E++ +++
Sbjct: 31 KESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDD 90
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
+ ++ ++R+K++E +R + +
Sbjct: 91 TKAWLKKSKKRQKKKEAERKKALLLDEKEK 120
Score = 29.7 bits (67), Expect = 3.1
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K+++ +KK++K + E+ ++ ++ E+ EE E + G
Sbjct: 350 AKQRRLAQKKRKKLRPEDIARQIAEERSEDEEEAAENNDNG 390
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 39.5 bits (92), Expect = 0.003
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+++K+ + KK K + + K E K KE+ K + EEEE+G E
Sbjct: 21 DRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDVDSSSSEEEEDGSE 80
Query: 61 E 61
Sbjct: 81 S 81
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 38.9 bits (91), Expect = 0.003
Identities = 16/79 (20%), Positives = 33/79 (41%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
+E+ + K +++ KKK+KKKKK+ KK + E +
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAK 225
Query: 68 RRRRRRKKEREKKRSSRRK 86
+ +++R + ++S K
Sbjct: 226 KLKKKRSIAPDNEKSEVYK 244
Score = 35.4 bits (82), Expect = 0.038
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 1 EKKKEKKKEKKKEKKKEK--------KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
E+++ KKK+KKK+KK +K + + + E KK KKK+
Sbjct: 177 EEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPD 236
Query: 53 EEEEE 57
E+ E
Sbjct: 237 NEKSE 241
Score = 31.5 bits (72), Expect = 0.53
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
+E+ + K + E+++ K+KKKK++KK +K E + K
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAK 225
Query: 76 EREKKRSSRRKPFKLSEISAT 96
+ +KKRS K SE+ +
Sbjct: 226 KLKKKRSIAPDNEK-SEVYKS 245
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This
family includes outer membrane proteins such as OmpH
among others. Skp (OmpH) has been characterized as a
molecular chaperone that interacts with unfolded
proteins as they emerge in the periplasm from the Sec
translocation machinery.
Length = 140
Score = 37.6 bits (88), Expect = 0.003
Identities = 23/79 (29%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE---KKKEKKKKEEEEGEEEEEGEE 60
K +K+ +KE KK + + EK +KE +K KEK +K+ + ++KKE+E ++ +E +
Sbjct: 17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQR 76
Query: 61 EGRRRRRRRRRRRKKEREK 79
+ ++ ++ ++R+++E +K
Sbjct: 77 KQQKLQQDLQKRQQEELQK 95
Score = 29.5 bits (67), Expect = 1.4
Identities = 16/57 (28%), Positives = 38/57 (66%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ +KE +K K+K +K E +++K+K+ +KK +E ++K++K +++ + ++EE
Sbjct: 36 KLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQEE 92
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 37.5 bits (87), Expect = 0.003
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE-- 61
K ++KE +KE+ + ++ +EKK K +E EE+E +
Sbjct: 40 KAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFATPSAVPQW 99
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
G++ R+R+R+ +K E + R + +
Sbjct: 100 GKKARKRQRKVIRKLLEAEEQLREDQYDDED 130
Score = 32.9 bits (75), Expect = 0.12
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKK---KEEKKKEKKKKEEEEGEEEEEGEEEG------- 62
K +EK+ ++++ + ++ +++K K + EE+ ++EE+ E+
Sbjct: 39 AKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFATPSAVPQ 98
Query: 63 -----RRRRRRRRRRRKKEREKKR 81
R+R+R+ R+ + E+ R
Sbjct: 99 WGKKARKRQRKVIRKLLEAEEQLR 122
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 38.2 bits (89), Expect = 0.003
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+KE K K + +++ K+ + K+E K K+E + EE +KE+ ++ EE E + E +
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Score = 34.7 bits (80), Expect = 0.049
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+++ K+ K E +E KE + KE+ K KE+ + E+ ++++ E+ E E + EE
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Query: 64 RRRRRRRRRRKKERE 78
+ + +K E E
Sbjct: 62 ENNKLKEENKKLENE 76
Score = 32.8 bits (75), Expect = 0.21
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ K + E+ K+ E K+++K K+E + +E +K+E + ++ E + E ++E
Sbjct: 6 KDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62
Score = 32.4 bits (74), Expect = 0.29
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ KE+ K K+++ + E+ +KE+ ++ ++ E K +E K + K KEE + E E
Sbjct: 21 NENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEAL 80
Query: 61 EGRRRR-----RRRRRRRKKERE 78
+ R R R+R KE+E
Sbjct: 81 KDRLLRTVAEYDNYRKRTAKEKE 103
Score = 29.0 bits (65), Expect = 4.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+K+ K K + +E K+ + K+E+K KE+ + EE +EE + E
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSE 49
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 38.1 bits (89), Expect = 0.003
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK +K + +E+ +E ++ +++ EK K++ K++ EE +E +K E+E E E +
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRII 64
Query: 61 EGRRRRRRRRRRRKKER 77
RR+ KE
Sbjct: 65 SSALLEARRKLLEAKEE 81
Score = 31.2 bits (71), Expect = 0.58
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 22 EKKKKEKKKKKEKKKKE--EKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREK 79
EK K+ ++ E++ +E E+ +E+ +K +EE + E E E R+ + R+++R
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRII 64
Query: 80 KR 81
Sbjct: 65 SS 66
>gnl|CDD|215038 PLN00040, PLN00040, Protein MAK16 homolog; Provisional.
Length = 233
Score = 38.2 bits (89), Expect = 0.003
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK----------KEEKKKEKKKKEEEE 51
+K K+E+++E K +K + +K EK+ + K + K + +E EE
Sbjct: 137 PRKLLKRERRRESKAQKAAQLEKSIEKELLERLKSGTYGDIYNFPSKSYNKVLEMEEVEE 196
Query: 52 GEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
EEE ++ +++ R + E E + +
Sbjct: 197 AEEELPKSDKNPNSKKKSRVHVEIEYEDEIEYKS 230
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 38.6 bits (90), Expect = 0.003
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSN 390
++YLHS I+HRDIK N+L +S
Sbjct: 117 VEYLHSNMIVHRDIKGANILRDSA 140
Score = 37.5 bits (87), Expect = 0.008
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 124 KICDFGLA-RVEEPDPNKAMTQEVV-TQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
K+ DFG + R++ + + V T Y+ +PE++ G + A DVWSVGC E+L
Sbjct: 144 KLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKA-DVWSVGCTVVEML 201
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 39.3 bits (92), Expect = 0.004
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 EKKKEKK-KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE 38
K E K + +EK K+KKKKEKKK+E+ K++EK + E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 39.3 bits (92), Expect = 0.004
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
K E K E+K K+KKKKEKKK++E K++E+ + E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 38.2 bits (89), Expect = 0.009
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K + K E+K K+KKKK++KK++E K++EK + E E
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 37.8 bits (88), Expect = 0.011
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 1 EKKKEKKKEKKKEKKK---EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+K +KKK +K E + + +++KE + E + +EKK + + + EE
Sbjct: 1500 KKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEE 1559
Query: 58 GEEEGRRRRRRRRRRRKKEREK 79
E ++R+ +++ K E
Sbjct: 1560 DYAESDIKKRKNKKQYKSNTEA 1581
Score = 37.8 bits (88), Expect = 0.012
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 1 EKKKEKKKEKKKEKKKEKK--------KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+++KE + + E KEKK +EK +E + + KK++ KK+ K E E
Sbjct: 1525 QEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAE 1582
Score = 35.8 bits (83), Expect = 0.048
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
K E K +EK KK KKKKEKKK+EE K+E+K + E
Sbjct: 730 GKDAEFKISDSVEEKTKK--KKKKEKKKEEEYKREEKARIE 768
Score = 32.8 bits (75), Expect = 0.36
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
KK + K+ + K E+K KK+KKK+++K++E K++E+ E E
Sbjct: 721 MKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 32.4 bits (74), Expect = 0.57
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRR 73
+ KK +KK+ +KK E + ++++E G+ E E ++E + +
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQ 1553
Query: 74 KK-------EREKKRSSRRKPFK 89
+K E + K+ +K +K
Sbjct: 1554 EKNIEEDYAESDIKKRKNKKQYK 1576
Score = 31.2 bits (71), Expect = 1.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
K+ + K+ + K +EK KK++KK EKKK+EE + EE+
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKK-EKKKEEEYKREEKA 765
Score = 30.5 bits (69), Expect = 2.0
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
KK + K + + E+K +KKKK+E++ EEE + EE+ R
Sbjct: 721 MKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.5 bits (69), Expect = 2.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+ + K + K + +++ KKK+KK+K++EE + EE
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREE 763
Score = 30.1 bits (68), Expect = 2.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 28 KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
+ K EEK K+KKKKE+++ EE + EE R
Sbjct: 732 DAEFKISDSVEEKTKKKKKKEKKKEEEYKR--EEKAR 766
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 39.3 bits (91), Expect = 0.004
Identities = 17/68 (25%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K E K KE+ K++++KE+ + ++ K+E+ K+EK++E++ ++ + +E
Sbjct: 1014 KHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIH----DNYKEMA 1069
Query: 63 RRRRRRRR 70
++R +++R
Sbjct: 1070 KKRLKKKR 1077
Score = 38.6 bits (89), Expect = 0.007
Identities = 15/49 (30%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 1 EKKKEKKKEKKKEKKKE--KKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+++KE+ + ++ K++E KK+KE++++ +K + K+ KK+ KKK+
Sbjct: 1029 QEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 38.2 bits (88), Expect = 0.008
Identities = 19/67 (28%), Positives = 40/67 (59%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRK 74
+ +K + K + K++ K++++KE + ++ KEEE G++E+E E+ R+ +
Sbjct: 1010 ECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMA 1069
Query: 75 KEREKKR 81
K+R KK+
Sbjct: 1070 KKRLKKK 1076
Score = 35.5 bits (81), Expect = 0.062
Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K+ ++ E + +EK + + + KE+ K +E+K+ + + + EE + E+
Sbjct: 992 DKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEK 1051
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E +R R+ KE KKR +++
Sbjct: 1052 EREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 35.1 bits (80), Expect = 0.078
Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK--EEKKKEKKKKEEEEGEEEEEG 58
E + + +K+ ++ + E ++K E K + +E+ K++++KE E + +
Sbjct: 984 EIESKLPLDKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKE 1043
Query: 59 EEEGRRRRRRRRRRRKKEREK-KRSSRRKPFKL 90
EE G++ + R +R RK + K ++++ K
Sbjct: 1044 EEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKK 1076
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 38.0 bits (89), Expect = 0.004
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRR 66
K K++E++ E ++ + EKK + EE + EE++ EE RR+R
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKR 68
Score = 31.5 bits (72), Expect = 0.44
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
K K+E+++ + ++ + +KK + +++ EEE+ EE RR+
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE-------YRRK 67
Query: 69 RRRRRKKEREKKR 81
R K EK +
Sbjct: 68 RLAEMKALAEKSK 80
Score = 31.5 bits (72), Expect = 0.48
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K K+E+++ + ++ + EK K + +EE EEE++
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEK-------------KLLDELDEELDEEEDDRFL 61
Query: 61 EGRRRRRRRRRRRKKEREK 79
E RR+R + E+ K
Sbjct: 62 EEYRRKRLAEMKALAEKSK 80
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 38.4 bits (90), Expect = 0.004
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 363 AFKSLKYLHSARILHRDIKPGNLLVNSN 390
K L YLH +HRDIK N+L+ +
Sbjct: 110 TLKGLAYLHETGKIHRDIKGANILLTED 137
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 38.6 bits (90), Expect = 0.004
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 361 SAAFKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
A + L YLHS +HRDIK GN+L+ +K
Sbjct: 122 HGALQGLAYLHSHERIHRDIKAGNILLTEPGTVK 155
Score = 38.2 bits (89), Expect = 0.005
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEIL--MGARHYSAAVDVWSVGCIFAELLG 181
K+ DFG A + P V T Y+ APE++ M Y VDVWS+G EL
Sbjct: 155 KLADFGSASLVSP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 209
Query: 182 RR 183
R+
Sbjct: 210 RK 211
>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 6.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 6, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK6 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK6 may play a role in stress responses
through its activation by the mitogen-activated protein
kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6
is highly expressed in the brain. It is not required for
viability, but together with PAK5, it is required for
normal levels of locomotion and activity, and for
learning and memory. Increased expression of PAK6 is
found in primary and metastatic prostate cancer. PAK6
may play a role in the regulation of motility.
Length = 297
Score = 38.5 bits (89), Expect = 0.004
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 33/150 (22%)
Query: 124 KICDFGL-ARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
K+ DFG A++ + P + V T Y+ APE++ Y VD+WS+G + E++
Sbjct: 157 KLSDFGFCAQISKDVPKRKSL--VGTPYWMAPEVI-SRTPYGTEVDIWSLGIMVIEMVDG 213
Query: 183 RILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQAT 242
+ + SPVQ + + D +P P + + + +S +
Sbjct: 214 EPPYFSDSPVQAMKRLRD---SPPP----------------KLKNAHKISPVLR------ 248
Query: 243 GEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
L +ML +P +R + L HP+L
Sbjct: 249 ----DFLERMLTREPQERATAQELLDHPFL 274
Score = 29.2 bits (65), Expect = 3.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 362 AAFKSLKYLHSARILHRDIKPGNLLV 387
+ ++L YLHS ++HRDIK ++L+
Sbjct: 125 SVLQALCYLHSQGVIHRDIKSDSILL 150
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 38.9 bits (90), Expect = 0.004
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKK-----------KEKKKKEEKKKEKKKKEE 49
E KK+ + K+ KK + E ++ +K+ K+ ++ ++K
Sbjct: 64 ENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAA 123
Query: 50 EEGEEEEEGEEEGRRRRRRRRRRRKKERE 78
+ EEE E+ + R+RR+ KK E
Sbjct: 124 ASSDVEEEKTEK----KVRKRRKVKKMDE 148
Score = 38.1 bits (88), Expect = 0.007
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+KK + E+ E KKK + K+ KK + E ++ E E+ ++
Sbjct: 49 RKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDK 108
Query: 62 GRRRRRRRRRRR---------KKEREKKRSSRRKPFKLSEIS 94
++ RR RR+ +++ EKK RRK K+ E
Sbjct: 109 ESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDV 150
Score = 34.3 bits (78), Expect = 0.11
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 3 KKEKKKEKKKEKK--------KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
K+ KK ++ +K +E+K ++K +K +K KK + E++ E + + EE E
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEF 167
Query: 55 EEEGEEE 61
E E
Sbjct: 168 VTSLENE 174
Score = 33.1 bits (75), Expect = 0.25
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
++ K+ + +++ E++K EKK +K +K K+ + + + E E + EE E
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESE 166
Score = 31.2 bits (70), Expect = 0.99
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 1 EKKKEKKKEKK--------KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
KK ++ +K +E+K EKK ++++K KK E + + + E EE E
Sbjct: 110 SKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRK--VKKMDEDVEDQGSESEVSDVEESEF 167
Query: 53 EEEEEGEEEG 62
E E E
Sbjct: 168 VTSLENESEE 177
Score = 31.2 bits (70), Expect = 1.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+E+K EKK K++K KK E + + + + +E + E E EEE +
Sbjct: 129 EEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELD 180
Score = 30.8 bits (69), Expect = 1.4
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
+E+K EKK K+++ KK ++ +++ + E EE + + E E E +
Sbjct: 129 EEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELD 180
Score = 30.4 bits (68), Expect = 1.7
Identities = 12/58 (20%), Positives = 29/58 (50%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
++ K+ + +++ +E+K +K+ +K+ + KK + E++ E E EE
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEES 165
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 38.4 bits (89), Expect = 0.004
Identities = 26/97 (26%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE----EEE 56
E+++E KEK E++ ++K +E+K++ K +E+ KKE + K++ E + ++E
Sbjct: 52 EREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDVDTDDE 111
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
EEE + R +R K++RE++ R+ ++ ++
Sbjct: 112 NEEEEYEAWKLRELKRIKRDREEREEMEREKAEIEKM 148
Score = 30.7 bits (69), Expect = 1.1
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 19/94 (20%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK--KEKKKKEEEE---------- 51
++K + +E+++E K++ ++E K+K E++K+E K +E+ KKE E
Sbjct: 43 RKKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEAN 102
Query: 52 -------GEEEEEGEEEGRRRRRRRRRRRKKERE 78
E EEE E + R +R +R ++ERE
Sbjct: 103 IDDVDTDDENEEEEYEAWKLRELKRIKRDREERE 136
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 38.4 bits (89), Expect = 0.004
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ D G+ARV E + A T + T YY +PE L + Y+ DVW++GC E+ +
Sbjct: 142 KVGDLGIARVLENQCDMASTL-IGTPYYMSPE-LFSNKPYNYKSDVWALGCCVYEMATLK 199
Query: 184 ILFQAQ 189
F A+
Sbjct: 200 HAFNAK 205
Score = 31.5 bits (71), Expect = 0.70
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+L+YLH ILHRD+K N+ + I+K
Sbjct: 114 ALQYLHEKHILHRDLKTQNVFLTRTNIIK 142
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 38.2 bits (89), Expect = 0.004
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLV 387
++L +LHS +++HRD+K GN+L+
Sbjct: 113 LEALNFLHSHKVIHRDLKAGNILL 136
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 37.7 bits (88), Expect = 0.004
Identities = 13/45 (28%), Positives = 34/45 (75%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+ E+++E+K++++++E+ + K + E+ + ++K KE +K+E+EE
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 33.5 bits (77), Expect = 0.11
Identities = 11/53 (20%), Positives = 38/53 (71%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+++ + ++ +++E++K++++++E+ + K + E+ + ++K KE ++ E+EE
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 32.7 bits (75), Expect = 0.24
Identities = 11/47 (23%), Positives = 32/47 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E+ + +++EK+ E+++E+ + K + ++ + ++K KE +K+E ++
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEM 166
Score = 31.1 bits (71), Expect = 0.68
Identities = 9/49 (18%), Positives = 33/49 (67%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
+ +++E++K+++++++ + + + E+ + +++ E ++E +EE R R
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 31.1 bits (71), Expect = 0.70
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
E+ ++EE++K + ++E E + E R +++ + +K+E E+ R
Sbjct: 120 EQLEREEEEK-RDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMR 167
Score = 30.4 bits (69), Expect = 1.2
Identities = 8/47 (17%), Positives = 33/47 (70%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+ ++E+++++ +E+++ + K + E+ + K+K K+ +K+++++ +
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMR 167
Score = 28.8 bits (65), Expect = 4.0
Identities = 8/42 (19%), Positives = 28/42 (66%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
E+K+++++ ++ + + + ++ + K+K K+ +K++ EE +
Sbjct: 127 EEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRH 168
Score = 28.8 bits (65), Expect = 4.1
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
+EK+ E+++E+ K ++ K+K ++ +KEE ++ + +
Sbjct: 127 EEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 36.1 bits (84), Expect = 0.004
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
KE+K+E+K ++++E K+ + K+E+ ++K +K K+ EE+ + +
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKKVAGLRGADLSEEDLADGD 53
Score = 32.6 bits (75), Expect = 0.064
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KE+K++EK ++E++ K+ K K E+ +EK +K ++ E
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKKVAGLRGADLSE 46
Score = 31.8 bits (73), Expect = 0.13
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
E+K+E+K ++++E K+ K K++E ++K EK KK + EE+ + +
Sbjct: 2 ERKEEEKAQREEELKRLKN---LKREEIEEKLEKIKKVAGLRGADLSEEDLADGD 53
Score = 31.1 bits (71), Expect = 0.22
Identities = 13/53 (24%), Positives = 33/53 (62%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+++KE++K ++++E K+ + K++E ++K EK K+ + EE+ + +
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKKVAGLRGADLSEEDLADGD 53
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 37.9 bits (89), Expect = 0.005
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKK 32
E +KEKKK KE+KK K++K+K ++
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 36.8 bits (86), Expect = 0.010
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK---KEEKKKEKKKKEEEE 51
+K KK+ K EK + + +KEKKK KEEKK K++K++ E
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLE 121
Score = 34.1 bits (79), Expect = 0.068
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK 29
E +KEKKK KE+KK K+EK K E+
Sbjct: 96 EAEKEKKKAMSKEEKK-AIKEEKDKLEEP 123
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 38.8 bits (91), Expect = 0.005
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+K+KE K E + K K EK K + + K +
Sbjct: 769 KKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVD 816
Score = 35.0 bits (81), Expect = 0.077
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+K+KK+++ K + + K K EK K + +
Sbjct: 764 YTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDA 810
Score = 34.6 bits (80), Expect = 0.10
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
EK+K++K+ K + E K K EK K + +
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAAD 807
Score = 33.4 bits (77), Expect = 0.21
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
E K E + K K +K K+ + K
Sbjct: 773 ESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSA 820
Score = 31.5 bits (72), Expect = 0.90
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+++KKEK+ + + E K K +K K +
Sbjct: 763 NYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDA 810
Score = 30.4 bits (69), Expect = 1.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+K+KK+KE K + + K K EK K+ +
Sbjct: 763 NYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVT 801
>gnl|CDD|216256 pfam01032, FecCD, FecCD transport family. This is a sub-family of
bacterial binding protein-dependent transport systems
family. This Pfam entry contains the inner components of
this multicomponent transport system.
Length = 311
Score = 38.3 bits (90), Expect = 0.005
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 153 APEI---LMGARH-----YSAAVDVWSVGCIFAELLGRRILFQAQSPVQQLGLITDLLGT 204
P I L+GA H SA + + + A+LL R +L + PV G++T L+G
Sbjct: 248 VPHIARLLVGANHRRLLPLSALIGALLL--LLADLLARTLLAPIELPV---GIVTALIGA 302
Query: 205 P 205
P
Sbjct: 303 P 303
>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
Receptor Kinase 4-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4-like group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. Members of the
GRK4-like group include GRK4, GRK5, GRK6, and similar
GRKs. GRKs in this group contain an N-terminal RGS
homology (RH) domain and a catalytic domain, but lack a
G protein betagamma-subunit binding domain. They are
localized to the plasma membrane through
post-translational lipid modification or direct binding
to PIP2.
Length = 285
Score = 38.3 bits (89), Expect = 0.005
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
+I D GLA VE P+ + + V T Y APE++ R Y+ + D W +GC+ E++
Sbjct: 142 RISDLGLA-VEIPE-GETIRGRVGTVGYMAPEVVKNER-YTFSPDWWGLGCLIYEMI--- 195
Query: 184 ILFQAQSPVQQ 194
+ +SP +Q
Sbjct: 196 ---EGKSPFRQ 203
Score = 31.0 bits (70), Expect = 1.1
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 367 LKYLHSARILHRDIKPGNLLVN 388
L+ LH RI++RD+KP N+L++
Sbjct: 115 LEDLHRERIVYRDLKPENILLD 136
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 35.9 bits (83), Expect = 0.005
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 32 KEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
++K EEK++EKKK+EE+E EEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEALA 100
Score = 34.8 bits (80), Expect = 0.014
Identities = 12/26 (46%), Positives = 22/26 (84%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEG 52
++K E+K++E+KK+E+K++EEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 33.2 bits (76), Expect = 0.055
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEE 51
++K ++K+EEKKKE++K+EEEE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 33.2 bits (76), Expect = 0.056
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 37 KEEKKKEKKKKEEEEGEEEEEGEEEG 62
E+K E+K++E+++ EE+EE EEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 31.7 bits (72), Expect = 0.18
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
++K E+K+E+KKKEEE+ EEEEE G
Sbjct: 73 AAEEKAEEKEEEKKKEEEK-EEEEEEALAG 101
Score = 29.4 bits (66), Expect = 0.96
Identities = 11/24 (45%), Positives = 21/24 (87%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEE 39
++K E+K++EKKK++EK+++EE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 29.4 bits (66), Expect = 1.1
Identities = 11/23 (47%), Positives = 20/23 (86%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKE 33
E+K E+K++EKKK+E+K+++E
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEE 95
Score = 29.4 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
++K ++K++EKKK+EEK++E EEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEE----EEEALA 100
Score = 29.0 bits (65), Expect = 1.6
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKE 27
+EK +EK++EKKK+E+K++E
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEE 94
Score = 28.2 bits (63), Expect = 2.6
Identities = 12/22 (54%), Positives = 21/22 (95%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKE 22
EK +EK++EKKKE++KE++++E
Sbjct: 76 EKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.2 bits (63), Expect = 3.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEE 61
+++ ++KEEE+ +EEE+ EEE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEE 95
Score = 27.8 bits (62), Expect = 3.3
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKE 22
+EK +EK++EKKKE++K+E
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEE 93
Score = 27.5 bits (61), Expect = 5.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEE 61
+EK +++EEE ++EEE EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEE 94
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 38.4 bits (90), Expect = 0.006
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE-------EEGEEEGRRRRRRRR 70
KK KE + E+++++ + E + K K+E+EG E EE E+ + +
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKL 283
Query: 71 RRRKKEREKKRSSRRKPF 88
K++++++ KP+
Sbjct: 284 EILKEKKDEELFWFEKPW 301
Score = 33.1 bits (76), Expect = 0.29
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK 35
EKKKE K E+K K+++KKEK K++EK+
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 32.7 bits (75), Expect = 0.37
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKK-KEKKKKEEKKKEKKKKEEEE 51
E K K+ + EKKK+ K E+K K+E+KKEK K+EE+E
Sbjct: 635 ELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 32.3 bits (74), Expect = 0.46
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
KK K+ + +E+++E + + E K K++++ ++ EE+E ++ E
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTE 278
Score = 31.1 bits (71), Expect = 1.1
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+ + E E K K++++ E+ ++KE K E + + +E++ EE
Sbjct: 240 DVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 30.4 bits (69), Expect = 1.9
Identities = 11/60 (18%), Positives = 33/60 (55%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+++E++ + + E E K +++++ ++ EEK+ K ++ ++ E +E ++E
Sbjct: 233 EEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDE 292
Score = 30.4 bits (69), Expect = 2.2
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK 40
K+ + +KK++ K E+K K+++KK++ K++E++
Sbjct: 640 KQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 29.6 bits (67), Expect = 4.0
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
++KK+ K EEK K+++KKE+ + EE+E
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 28.4 bits (64), Expect = 7.3
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK 30
+KK+ K + +EK K+++KKEK K+E+K+
Sbjct: 649 KKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 28.4 bits (64), Expect = 8.4
Identities = 11/64 (17%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 1 EKKKEKKKEKKKEKKKEK---KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E + +++E++ + + E K K+++E +++ E+K++ K E+ + E +
Sbjct: 228 ETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILK 287
Query: 58 GEEE 61
+++
Sbjct: 288 EKKD 291
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits
with a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 37.9 bits (89), Expect = 0.006
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
L+YLHS I++RD+KP NLL++S+ +K
Sbjct: 114 LEYLHSLDIVYRDLKPENLLLDSDGYIK 141
Score = 33.7 bits (78), Expect = 0.13
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVV-TQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFG A+ + T + T Y APEI++ + Y AVD W++G + E+L
Sbjct: 141 KITDFGFAKRVKGR-----TYTLCGTPEYLAPEIILS-KGYGKAVDWWALGILIYEML 192
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 37.7 bits (88), Expect = 0.006
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRR 71
K++K ++ + K+ K KK+ KK K+K K+ E +E + E E R +R ++
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKK--KRKIYFKRAESFVKEYRKAEREIIRLKRLAKK 62
Query: 72 RRKKEREKK 80
K +
Sbjct: 63 PGKFYVPAE 71
Score = 33.9 bits (78), Expect = 0.11
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
++E + K+ K +KK +KK+K K+ E KE +K E++
Sbjct: 9 ARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIR 55
Score = 33.5 bits (77), Expect = 0.14
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 18/80 (22%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
K++K ++ + K+ K KKK KKK+K K+ E +
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESF------------------VKEY 46
Query: 64 RRRRRRRRRRKKEREKKRSS 83
R+ R R K+ +K
Sbjct: 47 RKAEREIIRLKRLAKKPGKF 66
Score = 31.6 bits (72), Expect = 0.64
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K+ + KK+ K+K+K K+ + ++ +K E++ K+ KK
Sbjct: 19 KQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Score = 29.6 bits (67), Expect = 2.5
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKK--KEKKKKEEKKKEKKKKEEEEG 52
++ + ++ K KKK KKK K ++ + KE +K E + K+ ++ G
Sbjct: 11 QELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 38.1 bits (89), Expect = 0.006
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
KK KK K K K+KKKK K + ++ K KK+ KK
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 37.3 bits (87), Expect = 0.011
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
KK KK K + KK+KKK K + ++ K KKK KK
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 33.4 bits (77), Expect = 0.18
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
KK KK K + KKK+KK K + +E K KKK ++
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 31.5 bits (72), Expect = 0.84
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 2 KKKEKKKEKK-----KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K K KK + + KK KK K K KKKKK+ K E ++ + G+++
Sbjct: 332 KAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKK 390
Score = 31.1 bits (71), Expect = 0.88
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK 41
KK K + KK+KKK K + ++ K KK+ KK
Sbjct: 353 IKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 31.1 bits (71), Expect = 0.95
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K+ K+ + K K+KKKK K + ++ K KK+ ++
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 30.7 bits (70), Expect = 1.5
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 1 EKKKEKKKEKKKEK---------KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
EK E+ K+ K +K KK +K + K KK+KKK K + +E
Sbjct: 324 EKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEA 383
Query: 52 GEEEEEGEEE 61
++ ++
Sbjct: 384 KSSGKKKVKK 393
Score = 28.1 bits (63), Expect = 8.2
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 30 KKKEKKKKE-EKKKEKKKKEEEEGEE-EEEGEEEGRRRRRRRRRRRKKE 76
K E K E EK++E++++ EEE E+ EEG++E +++ +R R KE
Sbjct: 90 KPPELKSGELEKRRERREEAEEELEKAIEEGDDEEIKKQSKRTVRVTKE 138
Score = 28.1 bits (63), Expect = 9.2
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 9 EKKKEKKKEKKKKEKKKKE-----------KKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E++ EK E+ KK K KK KK K+ K + KK+KKK + E
Sbjct: 320 EERVEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSET 379
Query: 58 GEEEGRRRRRRRRR 71
+E +++ ++
Sbjct: 380 SQEAKSSGKKKVKK 393
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine
Kinase (PTK) family; Janus kinase (Jak) subfamily;
catalytic (c) domain (repeat 2). The Jak subfamily is
composed of Jak1, Jak2, Jak3, TYK2, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal tyr kinase
catalytic domain. Most Jaks are expressed in a wide
variety of tissues, except for Jak3, which is expressed
only in hematopoietic cells. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jaks are also involved in regulating the surface
expression of some cytokine receptors. The Jak-STAT
pathway is involved in many biological processes
including hematopoiesis, immunoregulation, host defense,
fertility, lactation, growth, and embryogenesis.
Length = 284
Score = 37.8 bits (88), Expect = 0.006
Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 25/144 (17%)
Query: 124 KICDFGLARVEEPDPNKAMTQ---EVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFGLA+V D + + E +Y APE L ++ SA+ DVWS G EL
Sbjct: 149 KISDFGLAKVLPEDKDYYYVKEPGESPIFWY-APECLRTSKFSSAS-DVWSFGVTLYELF 206
Query: 181 --GRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLS 238
G +QSP + ++G +M +L ++ + L S
Sbjct: 207 TYGD----PSQSPPAE---FLRMIG-IAQGQMIV------TRLLELLKEGERLPRPPSCP 252
Query: 239 SQATGEAVHLLVQMLYFDPTKRIS 262
E L+ +P R S
Sbjct: 253 D----EVYDLMKLCWEAEPQDRPS 272
Score = 30.8 bits (70), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
K + YL S R +HRD+ N+LV S ++K
Sbjct: 120 KGMDYLGSQRYIHRDLAARNILVESEDLVK 149
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 38.0 bits (89), Expect = 0.006
Identities = 25/87 (28%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 1 EKKKEKKKEKKKEKKKE-KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
E + ++K+EK+K+ ++E + E++ + K+++KE++++EE K + ++E+ E EEE E E
Sbjct: 113 EAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAE 172
Query: 60 EEGRRRRRRRRRRR-KKEREKKRSSRR 85
R+ + R R + ++E+ R
Sbjct: 173 RRERKEEKEREVARLRAQQEEAEDERE 199
Score = 36.8 bits (86), Expect = 0.017
Identities = 28/106 (26%), Positives = 60/106 (56%), Gaps = 25/106 (23%)
Query: 1 EKKKEKKKEKKKEKKKEKKK----------KEKKKKEKKKKKEKKKKEE------KKKEK 44
E+++++++E+ +E+ +E+++ +++ + ++K++K+KK +EE ++ E+
Sbjct: 81 EEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIER 140
Query: 45 KKKEEEEGEEEEE---------GEEEGRRRRRRRRRRRKKEREKKR 81
K++E+E EEE E E R RR R+ +KERE R
Sbjct: 141 KEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVAR 186
Score = 34.5 bits (80), Expect = 0.074
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK---EKKKKEEEEGEEEEEGEEE 61
E ++E+ EK+ E ++ E++ EK++ K + + E ++ EK+++ E EEE E E
Sbjct: 258 EAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGER 317
Query: 62 GRRRRRRRRRRRKKEREKK 80
R R+ R ++ER++
Sbjct: 318 LREEEAERQARIEEERQRL 336
Score = 34.5 bits (80), Expect = 0.082
Identities = 26/95 (27%), Positives = 59/95 (62%), Gaps = 10/95 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKK-------KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
E+ + K++EK++E+++E K K E++++ + +++E+K+++E++ + + ++EE E
Sbjct: 136 ERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAE 195
Query: 54 EEEEGEEEGRRRR---RRRRRRRKKEREKKRSSRR 85
+E E +E R R+ R+KE+E+ RR
Sbjct: 196 DEREELDELRADLYQEEYERKERQKEKEEAEKRRR 230
Score = 34.1 bits (79), Expect = 0.098
Identities = 17/74 (22%), Positives = 44/74 (59%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
KE++ ++++ +++ E+++ +K+ ++++ ++E ++++ K E E E+ EE RR
Sbjct: 246 KEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRA 305
Query: 68 RRRRRRKKEREKKR 81
R +E E+ R
Sbjct: 306 AEREEELEEGERLR 319
Score = 34.1 bits (79), Expect = 0.11
Identities = 22/81 (27%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE--------GEE 60
E+ + K+++K+K+E +K+ ++K++ ++ +EE+ +EK+++ +EE EEE E
Sbjct: 211 EEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAE 270
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
+ + +RR K E +R
Sbjct: 271 DEELEQENAEKRRMKRLEHRR 291
Score = 33.3 bits (77), Expect = 0.17
Identities = 21/93 (22%), Positives = 56/93 (60%), Gaps = 10/93 (10%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKK---------EKKKKKEKKKKEEKKKEKKKKEEE-EGE 53
+E+ K +E+++E+K+KE++++ E+++K+ +++ EE+ +E+++ +E E
Sbjct: 49 EERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERI 108
Query: 54 EEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+EE+ E +R ++++ R + + + RK
Sbjct: 109 QEEDEAEAQEKREKQKKLREEIDEFNEERIERK 141
Score = 33.3 bits (77), Expect = 0.18
Identities = 22/83 (26%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE----EEEGEEEE 56
++KE++KEK++ +K+ ++K+E ++ +++ +EK+++ ++++ +++ E E+ E+E
Sbjct: 213 YERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDE 272
Query: 57 EGEEEGRRRRRRRRRRRKKEREK 79
E E+E +RR +R ++E E+
Sbjct: 273 ELEQENAEKRRMKRLEHRRELEQ 295
Score = 32.2 bits (74), Expect = 0.43
Identities = 22/98 (22%), Positives = 58/98 (59%), Gaps = 11/98 (11%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE-------KKKKEEKKKEKKKKEEEEGE 53
E+++ +++E+K+EK++E + +++E + ++E +EE ++++++KE+EE E
Sbjct: 167 EEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAE 226
Query: 54 EEEEGEEEGRRRR----RRRRRRRKKEREKKRSSRRKP 87
+ ++E +R R + R ++ER ++ + R +
Sbjct: 227 KRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERM 264
Score = 31.8 bits (73), Expect = 0.59
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE-EEGEEE-EEGEEEG 62
+ +EKK+ K +EK+++ + + ++++ K EE+++E+K+KEE EG +E EE
Sbjct: 24 AQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEER 83
Query: 63 RRRRRRRRRRRKKEREKKR 81
+RR+ R +ERE+
Sbjct: 84 EKRRQEEYEERLQEREQMD 102
Score = 31.8 bits (73), Expect = 0.63
Identities = 24/98 (24%), Positives = 56/98 (57%), Gaps = 20/98 (20%)
Query: 1 EKKKEKKKEKKK-----EKKKEKKKKEKKKKEKKKKKEKKKKE-------EKKKEKKKKE 48
K E+K+E+++ E+++ K E++++E+K+K+E+++ E++++++++E
Sbjct: 31 RIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEE 90
Query: 49 EEEGEEE--------EEGEEEGRRRRRRRRRRRKKERE 78
EE +E E +EE + +R ++KK RE
Sbjct: 91 YEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLRE 128
Score = 31.4 bits (72), Expect = 0.67
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
+ + +EKK+ + ++K+E+++ +E +E++ K E EE E +E RR R + + +E
Sbjct: 23 DAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEE 82
Query: 77 REKKR 81
REK+R
Sbjct: 83 REKRR 87
Score = 31.0 bits (71), Expect = 1.1
Identities = 22/84 (26%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 1 EKKKEKKKEKKKE------KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
++K+EK+K+ ++E ++ E+K++EK+++ +++ K + + EK + ++++E E E
Sbjct: 117 QEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRER 176
Query: 55 EEEGEEEGRRRRRRRRRRRKKERE 78
+EE E E R R ++ + E
Sbjct: 177 KEEKEREVARLRAQQEEAEDEREE 200
Score = 30.3 bits (69), Expect = 1.6
Identities = 19/92 (20%), Positives = 55/92 (59%), Gaps = 14/92 (15%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE-------------KKKEKKKKEE 49
++E+++E ++ ++KE+K++E + ++++ + ++EE ++KE++ KE+
Sbjct: 164 EREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQ-KEK 222
Query: 50 EEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
EE E+ ++E +R R + +++ +++R
Sbjct: 223 EEAEKRRRQKQELQRAREEQIEEKEERLQEER 254
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 38.6 bits (89), Expect = 0.007
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 3 KKEKKKEKKKEKK-KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE-EEEGEE 60
+KE K E K EKK+ E+ ++E++++ E+++ E ++E+ ++E E E E + E
Sbjct: 441 EKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLE 500
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKL 90
R R R R + ER++ +RR + L
Sbjct: 501 RDRLDRLERERVDRLERDRLEKARRNSYFL 530
Score = 34.3 bits (78), Expect = 0.13
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 123 SKICDFGLAR---VEEPDPNKAMTQEVV-TQYYRAPEILMG-ARHYSAAVDVWSVGCIFA 177
+KI DFGL++ +E +M V T YY +PE+L+ + Y D+W++GCI
Sbjct: 181 AKIGDFGLSKNIGIE------SMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIY 234
Query: 178 ELLGRRILFQAQSPVQQL 195
EL + F + QL
Sbjct: 235 ELCSGKTPFHKANNFSQL 252
Score = 32.4 bits (73), Expect = 0.46
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRR 72
+K ++ + +K+ +K E K E+K+ E+ ++EE E E E E R R R R
Sbjct: 431 DKDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERME----RIERERLER 486
Query: 73 RKKEREKKRSSRRKPFKLSEISATRPD 99
+ ERE+ R + +L + R D
Sbjct: 487 ERLERERLERDRLERDRLDRLERERVD 513
Score = 32.4 bits (73), Expect = 0.54
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
K+ ++ + +KE +K + K +KK ++ E EE E E E R R R R ++
Sbjct: 432 KDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLER 491
Query: 76 ER-EKKRSSRRKPFKLSEISATR 97
ER E+ R R + +L R
Sbjct: 492 ERLERDRLERDRLDRLERERVDR 514
Score = 31.2 bits (70), Expect = 1.3
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
K+ + + EK+ +K + K +KK+ E+ ++EE +E+ ++E E E E E E
Sbjct: 432 KDHAERARIEKENAHRKALEMKILEKKRIERLEREE--RERLERERMERIERERLERERL 489
Query: 64 RRRRRRRRRRKKER----EKKRSSR 84
R R R R +++R E++R R
Sbjct: 490 ERERLERDRLERDRLDRLERERVDR 514
Score = 29.3 bits (65), Expect = 4.3
Identities = 15/71 (21%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EKK+ ++ E+++ ++ E+++ E+ ++E+ ++ E+ ++E ++++ +++ + E E +
Sbjct: 456 EKKRIERLEREERERLERERMERIERERLER-ERLERERLERDRLERDRLDRLERERVDR 514
Query: 61 EGRRRRRRRRR 71
R R + RR
Sbjct: 515 LERDRLEKARR 525
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 37.6 bits (87), Expect = 0.007
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
KK K K+ K K KK K +K + KKE K+ KKE E E
Sbjct: 45 KKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFE 94
Score = 37.6 bits (87), Expect = 0.008
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK--KKEEEEGEEEEEG 58
E+KK K+ K+ K KK K K K+ K ++ K K KK + E+ E
Sbjct: 14 EEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESV 73
Query: 59 EEEGRRRRRRRRRRRKKEREKK 80
++E ++ ++ E +
Sbjct: 74 KKESVAKKTVKKEAVSAEVFEA 95
Score = 33.8 bits (77), Expect = 0.13
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKK---KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E KK KK+ +EKK KK K K KK K K KK K KK + ++
Sbjct: 3 ETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK 62
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
+ + ++ K+ KK + + F+ S
Sbjct: 63 VTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNK 98
Score = 32.2 bits (73), Expect = 0.35
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
+ K K KK K EK + KK+ KK +K+ + E K
Sbjct: 52 KTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLF 100
Score = 31.8 bits (72), Expect = 0.48
Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKE---KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
KK KE K KK K K K+ KK K K +K K +K E +E
Sbjct: 21 KKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAK 80
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSS 83
+ + + K S
Sbjct: 81 KTVKKEAVSAEVFEASNKLFKNTSK 105
Score = 31.1 bits (70), Expect = 0.89
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 1 EKKKEKKKEKKKEK-------KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K K+ K K K K E KKE K+ KK+ + + K K
Sbjct: 48 AKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFK 101
Score = 28.8 bits (64), Expect = 5.5
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE-----EGEEEEEGEEEGRRR 65
E KK KKK ++K+ KK KE K +K K + + ++ +
Sbjct: 1 MAETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTT 60
Query: 66 RRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDST 101
++ + K E KK S +K K +SA +++
Sbjct: 61 KKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEAS 96
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 35.0 bits (81), Expect = 0.007
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
K E KKK+KKKK+K + K KK E E E
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG 60
Score = 33.1 bits (76), Expect = 0.031
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
K E +KKKK+KKKK E K K+ ++ EG EG
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG 60
Score = 31.2 bits (71), Expect = 0.14
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K + + KK+KKKKK+K + + KK E+ E E
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG 60
Score = 28.9 bits (65), Expect = 0.96
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 25 KKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K E K+KKKK++KK E + + E EG
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEG 54
Score = 28.9 bits (65), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKK 31
KKK+KKK+KK E K +K E +
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 28.9 bits (65), Expect = 1.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE 39
KK+KKK+KKK + K KK + + E
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG 60
Score = 28.5 bits (64), Expect = 1.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK 35
E KKK+KKK+KK E K K+ + +
Sbjct: 19 EADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
>gnl|CDD|240235 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisional.
Length = 211
Score = 37.1 bits (86), Expect = 0.007
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE--- 60
+KK ++ K K K+ K K K +K K + EE+ E EE G
Sbjct: 35 PNRKKSAPEQVPTGKNKLLLTKRSKLKGIPKPRKLHKHGFWAEIFEEKVEREELGNPCKD 94
Query: 61 ------EGRRRRRRRRRRRKKE 76
+G+RR R + +
Sbjct: 95 LDKDIIKGKRRPRLTLKNTNNQ 116
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 37.6 bits (87), Expect = 0.008
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
KK KK KK KK K K+ KK K + K K + K K +++ ++ +
Sbjct: 250 KKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKA 309
Query: 63 RRRRRRRRRRRKKEREKKRSSRR 85
+ + +R K ++ KK + +R
Sbjct: 310 KATAKAPKRGAKGKKAKKVTKKR 332
Score = 37.6 bits (87), Expect = 0.008
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK-----KKKEEEEGEEEE 56
KK K K KK K+ KK KK + KK KK K K + + +
Sbjct: 234 TAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKA 293
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
+ +++ ++ + + + KR ++ K K
Sbjct: 294 KAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAK 326
Score = 37.2 bits (86), Expect = 0.012
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KK KK KK K +K K+ K K K K + K + KKK ++ + +
Sbjct: 253 KKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKAT 312
Query: 62 GRRRRRRRRRRRKKEREKKRS 82
+ +R + ++ K+ KKR+
Sbjct: 313 AKAPKRGAKGKKAKKVTKKRA 333
Score = 32.9 bits (75), Expect = 0.23
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K KK KKK K K+ K K K+ KK +K +K K
Sbjct: 220 KSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAK 265
Score = 32.9 bits (75), Expect = 0.24
Identities = 19/96 (19%), Positives = 37/96 (38%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK K K KK K + K+ KKK K KK K + + ++ ++
Sbjct: 199 AKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKK 258
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISAT 96
++ + ++ KK + + + K ++ A
Sbjct: 259 ALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAK 294
Score = 30.2 bits (68), Expect = 1.7
Identities = 15/45 (33%), Positives = 16/45 (35%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
KK K K KK K + KK KKK K KK
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 172
Score = 36.7 bits (85), Expect = 0.008
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
+++KE+++E K+E K+K+ +KK K+ ++ + E K++ + E E E G EE
Sbjct: 97 DEEKERREESKEEMKEKKFEKKLKELRRAVRSSEYTNKKEGRVHEHEFGPETNGVEEDTY 156
Query: 65 RRR 67
RR
Sbjct: 157 RRT 159
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 38.3 bits (89), Expect = 0.008
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 1 EKKKEKKKEKKKEKKK-EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
EK +KE +++ + EK KE++K +K+ ++E ++ +E+++ KK + E+E +E +
Sbjct: 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKAL 577
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQP 110
++ R + +K + K+ S KL E P +QA +
Sbjct: 578 KKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPT-NFQADKI 627
Score = 34.8 bits (80), Expect = 0.087
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE-----EEEGEEE 55
E+ K E K+E +K +KE ++K E +K K++EK KKE EE E E
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERE 559
Query: 56 EEGEEEGRRRRRRRRRRRKKEREKK-RSSRRK 86
+ E + + + KKE E R + K
Sbjct: 560 RNKKLELEKEAQEALKALKKEVESIIRELKEK 591
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 37.2 bits (86), Expect = 0.008
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ K+ KEK E++ E K+ +K E+ K + EE E+ E+ +EE +
Sbjct: 171 EQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAK 230
Query: 61 EGRRRRRRR 69
E ++
Sbjct: 231 EPVEEQQEV 239
Score = 33.0 bits (75), Expect = 0.23
Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKE----KKKKEEKKKEKKKKEEEE-------G 52
K K+K +E+ KE+ + +K K++E K+ + ++ K ++ ++ G
Sbjct: 94 VRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAG 153
Query: 53 EEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTR 112
+ EE E+ + ++ +EK + K A R + D
Sbjct: 154 KVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDE 213
Query: 113 Q 113
+
Sbjct: 214 E 214
Score = 32.6 bits (74), Expect = 0.28
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEK--KKKEKKKKKEKKKKEEKKKEKK---KKEEEEGEEE 55
EK + +E + +++ + +K K+K +E+ K++ + +K K+EE+G +
Sbjct: 69 EKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGK 128
Query: 56 EEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTID 103
E +E + R++ E + D
Sbjct: 129 EPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQD 176
Score = 31.4 bits (71), Expect = 0.70
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEK--KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+E E+ K+ KEK +++ KE +K E+ K E ++ +EE+ E+
Sbjct: 164 HVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKA 223
Query: 60 EEGRRRRRRRRRRRK 74
+ + +++
Sbjct: 224 IKEELAKEPVEEQQE 238
Score = 28.7 bits (64), Expect = 4.6
Identities = 16/78 (20%), Positives = 35/78 (44%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+E E+ K+ K++ ++E + KE +K E+ K + EE +EE+ E
Sbjct: 162 SYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDS 221
Query: 64 RRRRRRRRRRKKEREKKR 81
+ + + E +++
Sbjct: 222 KAIKEELAKEPVEEQQEV 239
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 37.0 bits (85), Expect = 0.008
Identities = 21/61 (34%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEK-KKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK + KK+K ++E+ +K ++++E+ +++ E +++EEK E++ +EE+E E EE+ E
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIE 170
Query: 61 E 61
E
Sbjct: 171 E 171
Score = 34.3 bits (78), Expect = 0.054
Identities = 17/57 (29%), Positives = 39/57 (68%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
KK+ K+KK ++E+ +K +++++E +++ E ++ ++K +E E +EE+E E E +
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQ 167
Score = 33.1 bits (75), Expect = 0.16
Identities = 15/64 (23%), Positives = 42/64 (65%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+++ + KK+ K+KK ++++ +K ++++++ E++ E +++EE+ E E++ E+E
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 64 RRRR 67
R +
Sbjct: 164 REEQ 167
Score = 32.7 bits (74), Expect = 0.18
Identities = 14/61 (22%), Positives = 42/61 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK +++++E ++ + E+++++ ++E ++++E++++E+ +E+ E E E++E E
Sbjct: 129 EKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESET 188
Query: 61 E 61
E
Sbjct: 189 E 189
Score = 32.3 bits (73), Expect = 0.26
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
+++ + KK +KKK ++E+ +K +E EE EE E RR + R ++E+E++
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 81 RSSR 84
R +
Sbjct: 164 REEQ 167
Score = 32.0 bits (72), Expect = 0.33
Identities = 18/74 (24%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK---KKEEEEGEEEEEGEEEGRR 64
+++ + KK+ KK+K ++++ EK ++E ++ E++ ++ EE+ +E E+ EE+ R
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 65 RRRRRRRRRKKERE 78
R + + + E
Sbjct: 164 REEQTIEEQSDDSE 177
Score = 31.6 bits (71), Expect = 0.47
Identities = 11/56 (19%), Positives = 41/56 (73%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
++++ +K +++ ++ E++ + ++++EK ++E ++++E+++E++ EE+ + E E
Sbjct: 124 RQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHE 179
Score = 31.2 bits (70), Expect = 0.57
Identities = 12/56 (21%), Positives = 41/56 (73%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
++++ EK +++++E +++ + ++ ++K E++ +EE+++E++++ EE ++ E E
Sbjct: 124 RQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHE 179
Score = 30.8 bits (69), Expect = 0.95
Identities = 12/61 (19%), Positives = 42/61 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E ++ + E+++EK E++ +E++++E++++ +++ ++ + E +++E E E +++ E
Sbjct: 137 ELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTE 196
Query: 61 E 61
+
Sbjct: 197 K 197
Score = 29.3 bits (65), Expect = 2.9
Identities = 13/61 (21%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKK-KKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+++E+ +E+ + +++E+K E++ ++E+++++E++ EE+ + + + E+ E E E ++
Sbjct: 133 QEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDD 192
Query: 61 E 61
+
Sbjct: 193 D 193
Score = 28.1 bits (62), Expect = 6.4
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 24 KKKEKKKKKE---KKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
KK + KKKK ++++ EK ++++++ EE E E E+ R + + R ++E+ +
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIE 170
Query: 81 RSSRRKPFKLSEISATRPDSTID 103
S ++ E + +S D
Sbjct: 171 EQSDDSEHEIIEQDESETESDDD 193
Score = 27.7 bits (61), Expect = 8.1
Identities = 12/64 (18%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Query: 1 EKKKE---KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+KKK ++++ +K +++ ++ +E+ + E++++K ++++++++E++++E+ E+ ++
Sbjct: 116 KKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDD 175
Query: 58 GEEE 61
E E
Sbjct: 176 SEHE 179
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 37.1 bits (87), Expect = 0.008
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
KI DFGL+R V + D + T + + APE L +++ DVWS G
Sbjct: 145 KISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKD-GIFTSKSDVWSFGV 195
Score = 30.6 bits (70), Expect = 1.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
++YL S + +HRD+ N LV + ++K
Sbjct: 118 MEYLASKKFVHRDLAARNCLVGEDLVVK 145
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 35.8 bits (83), Expect = 0.009
Identities = 10/53 (18%), Positives = 27/53 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
+ + ++EK + K+ + +++E +K +++ K+ KK E +G+
Sbjct: 78 INCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQGQ 130
Score = 30.0 bits (68), Expect = 0.87
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 1 EKKKEKKKE---KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K + E +E+K + +K+ K ++E+ +K +K+ +K KK E
Sbjct: 74 VGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPV 127
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 38.1 bits (88), Expect = 0.009
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 EKKKEKK-KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
E E+ +E ++ + E + E+ E +++ E + K E + E + E +GE+E EGE
Sbjct: 639 EHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGE 698
Query: 60 EEGRR 64
E +
Sbjct: 699 IEAKE 703
Score = 38.1 bits (88), Expect = 0.010
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++E E + E K+++K + E++++EE+++E++++EEEE EEEEE E
Sbjct: 832 TGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891
Query: 61 E 61
E
Sbjct: 892 E 892
Score = 35.4 bits (81), Expect = 0.063
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K + ++E E + E K+ EK + + EE+++E++++EEEE EEEEE EEE
Sbjct: 829 KDETGEQELNAENQGEAKQDEKGV-DGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEE 887
Score = 31.5 bits (71), Expect = 1.0
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
K + + + ++ E+ ++ + + E ++ + E++ + E +GE E EGE R+
Sbjct: 632 KGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERK 690
Score = 31.1 bits (70), Expect = 1.2
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E K E +++ + + E K+ EK +E++++EEEE EEEEE EEE
Sbjct: 827 EVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEE 883
Score = 31.1 bits (70), Expect = 1.3
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + ++ + E++ E + K + + E + E+K ++E + E + KE + E E E
Sbjct: 656 EGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEV 715
Query: 61 E 61
E
Sbjct: 716 E 716
Score = 30.7 bits (69), Expect = 1.5
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK------KKEEKKKEKKKKEEEEGEE 54
E+K E++ E + E K+ K E + +E + + E + + E + E+ ++ E+EGE
Sbjct: 688 ERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEG 747
Query: 55 EEEGEEEGRRRRRRRRRRRKKERE 78
E EG+ E R+ + E E
Sbjct: 748 EAEGKHEVETEGDRKETEHEGETE 771
Score = 30.7 bits (69), Expect = 1.8
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E E ++E + E K E + + + E+K ++E + + E K+ K E E E E EGE
Sbjct: 662 ESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGET 721
Query: 61 E 61
E
Sbjct: 722 E 722
Score = 30.3 bits (68), Expect = 2.1
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKK-KKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
E E+ E+ + + E + E+ + E++ + E K E + + E E + E E EG
Sbjct: 639 EHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGE 698
Query: 64 RRRRRRRRRRKKEREKKRS 82
+ + + E E+
Sbjct: 699 IEAKEADHKGETEAEEVEH 717
Score = 29.6 bits (66), Expect = 3.3
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E E+K E++ E + E K+ + K + + ++ E + + E + + + E E GEE EE E+
Sbjct: 684 EIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVED 743
Query: 61 EG 62
EG
Sbjct: 744 EG 745
Score = 29.6 bits (66), Expect = 3.7
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE------ 54
E K E + E + +++ +++ + + E K+ K + E ++ E + + E EG E
Sbjct: 674 ETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIE 733
Query: 55 -EEEGEEEGRRRRRRRRRRRKKEREKKR 81
EEGEE + + E E R
Sbjct: 734 TGEEGEEVEDEGEGEAEGKHEVETEGDR 761
Score = 29.2 bits (65), Expect = 4.5
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + E K E +++ E + + K+ +K ++EEEE EEEEE EE
Sbjct: 819 SETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEE 878
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKL 90
E ++E E++ +P L
Sbjct: 879 E------------EEEEEEEEEENEEPLSL 896
Score = 28.8 bits (64), Expect = 6.0
Identities = 12/59 (20%), Positives = 28/59 (47%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
K + + + E+ +E ++ E + + ++ + ++E E E + E E EG R+
Sbjct: 632 KGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERK 690
Score = 28.8 bits (64), Expect = 6.0
Identities = 13/54 (24%), Positives = 32/54 (59%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
E+ +E + E + + + K E + + ++K+ E + + + + +E+E E E + E+G
Sbjct: 736 EEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDG 789
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 37.7 bits (87), Expect = 0.009
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
E K+ K K KK K +E+++KK K K++K K+ + ++E + E +++++
Sbjct: 520 EADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKK 579
Query: 69 RRRRRKKEREKK 80
+ ++KK KK
Sbjct: 580 QIAKQKKLDSKK 591
Score = 35.8 bits (82), Expect = 0.044
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK----EEKKKEKKKKEEEEGEEEEEGEEE 61
K E + K K K KK+K ++++EKK K K+K+ KK + ++EE E
Sbjct: 514 KYSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAEN 573
Query: 62 GRRRRRRRRRRRKKEREK 79
++++++ +++K + +K
Sbjct: 574 LKKKKKQIAKQKKLDSKK 591
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 37.8 bits (88), Expect = 0.009
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E ++ K+E +++ +K + E+ ++ K+K + ++ KEE ++ + + +E + EE
Sbjct: 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLL 581
Query: 61 EGRRRRRRRRRRRKKEREKKRSS 83
R+ R R KE +KK
Sbjct: 582 RTRKEELEELRERLKELKKKLKE 604
Score = 37.4 bits (87), Expect = 0.013
Identities = 13/95 (13%), Positives = 43/95 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+E +++ ++ ++ E++ +E +++ + + ++ EE ++ K EE + EE+ E+
Sbjct: 281 RLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEK 340
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISA 95
+ + + + + +L E+
Sbjct: 341 LESELEELAEEKNELAKLLEERLKELEERLEELEK 375
Score = 37.4 bits (87), Expect = 0.014
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
++E + + E+ +++ +EK +K + +E ++ +EK + ++ KEE E+ E +
Sbjct: 514 EEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKE 573
Query: 63 RRRRRRRRRRRKKEREKKRS 82
R R RK+E E+ R
Sbjct: 574 LLEELRLLRTRKEELEELRE 593
Score = 35.9 bits (83), Expect = 0.036
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK--KKEEKKKEKKKKEEEEGEEEEEGEEEG 62
EK+ EK E+ K+ ++ ++ KE+ + + +E+ +E +K+ EE E EE EEE
Sbjct: 374 EKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEI 433
Query: 63 RRRRRRRRRRRKKERE 78
++ + + KE
Sbjct: 434 KKLEEQINQLESKELM 449
Score = 35.9 bits (83), Expect = 0.037
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE--EGEEEEEGEEEGR 63
+K EK E KE K+ K K E+ + + + E+ + + EEE E ++ EE +EE
Sbjct: 167 EKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQE 226
Query: 64 RRRRRRRRRRKKEREKKRSSRRK 86
+ +ER + ++
Sbjct: 227 EEELEQEIEALEERLAELEEEKE 249
Score = 35.9 bits (83), Expect = 0.042
Identities = 17/78 (21%), Positives = 40/78 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK E+ K+ ++ ++ K++ + ++ +E+ ++ EK+ E+ ++E EE EEE + E
Sbjct: 378 EKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLE 437
Query: 61 EGRRRRRRRRRRRKKERE 78
E + + +
Sbjct: 438 EQINQLESKELMIAELAG 455
Score = 35.9 bits (83), Expect = 0.043
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
++ K K +E + + + + ++ + E++ KE KK E+ ++E+EE E E+E E
Sbjct: 179 VIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALE 238
Query: 63 RRRRRRRRRRRKKEREKKR 81
R + + E K R
Sbjct: 239 ERLAELEEEKERLEELKAR 257
Score = 35.5 bits (82), Expect = 0.046
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKK--KEKKKKEEKKKEKKKKEEEEGEEEEEG 58
E ++E ++ +++ + +E ++ +K K +E+ +K E+K EK + E EE EE+
Sbjct: 295 ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNE 354
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKL 90
+ R + R +E EK+ + K
Sbjct: 355 LAKLLEERLKELEERLEELEKELEKALERLKQ 386
Score = 34.7 bits (80), Expect = 0.081
Identities = 16/80 (20%), Positives = 43/80 (53%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ +E +KE ++ +++ + E ++ K++ +EK +K E E+ ++ +E+ + ++ EE
Sbjct: 501 EEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEE 560
Query: 61 EGRRRRRRRRRRRKKEREKK 80
+ R + + E +
Sbjct: 561 LRQLEDRLQELKELLEELRL 580
Score = 34.4 bits (79), Expect = 0.11
Identities = 21/85 (24%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK-KKKEEKKKEKKKKEEEEGEEEEEGE 59
K++ ++K +K E E+ ++ K+K + ++ KE+ ++ E++ +E K+ EE E
Sbjct: 527 LKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKE 586
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSR 84
E R R + ++K + ++R S+
Sbjct: 587 ELEELRERLKELKKKLKELEERLSQ 611
Score = 34.0 bits (78), Expect = 0.16
Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE-EKKKEKKKKEEEEGEEEEEGEE 60
K+ E+ ++ KE+ E ++ +E+ ++ EK+ +E E++ E+ ++E ++ EE+ E
Sbjct: 385 KQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLE 444
Query: 61 EGRRRRRRRRRRRKK 75
+K
Sbjct: 445 SKELMIAELAGAGEK 459
Score = 33.6 bits (77), Expect = 0.20
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE---EKKKEKKKKEEEEGEEEEEG 58
K K ++ E + + E + + E++ K+ KK +E E+++E+ ++E E EE
Sbjct: 184 KAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAE 243
Query: 59 -EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
EEE R + R + E + + + + +L E+
Sbjct: 244 LEEEKERLEELKARLLEIESLELEALKIREEELREL 279
Score = 33.2 bits (76), Expect = 0.28
Identities = 20/93 (21%), Positives = 44/93 (47%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ KE+ ++ + ++ K+ E+ + + +K+E ++ E+ KE KKK +E E + EE
Sbjct: 555 QQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEE 614
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
+ +E E++ S + L
Sbjct: 615 LLQSLELSEAENELEEAEEELESELEKLNLQAE 647
Score = 32.8 bits (75), Expect = 0.33
Identities = 18/81 (22%), Positives = 44/81 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + EK + + ++ + E+ +++ ++ + + ++E ++ E +++ EE+ EE E+ EE
Sbjct: 636 ESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEE 695
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
E + R KK E ++
Sbjct: 696 ELEQLREELEELLKKLGEIEQ 716
Score = 32.8 bits (75), Expect = 0.37
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 1 EKKKEKK---KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
EK ++ + +E +EK + K E++ KE +++ E+ +KE +K ++ K+ EE +E +
Sbjct: 336 EKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELK 395
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRS 82
E + +E EK+
Sbjct: 396 EELAELSAALEEIQEELEELEKELE 420
Score = 31.7 bits (72), Expect = 0.80
Identities = 17/86 (19%), Positives = 43/86 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+++ +++ + E++ + ++EK++ E+ K + + + + + K +EEE E E EE
Sbjct: 226 EEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEE 285
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
+ R R+ E ++ +
Sbjct: 286 LEEKIERLEELEREIEELEEELEGLR 311
Score = 31.7 bits (72), Expect = 0.81
Identities = 14/90 (15%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE----KKKKEEEEGEEEE 56
++ K + + E + + K ++++ ++ ++ ++ EEK + +++ EE E E E
Sbjct: 250 RLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEG 309
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+ + +ER +K + +
Sbjct: 310 LRALLEELEELLEKLKSLEERLEKLEEKLE 339
Score = 31.7 bits (72), Expect = 0.87
Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEK-KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+ ++ E+ KEK + ++ KE+ ++ E + ++ K+ EE + + +KEE E E E
Sbjct: 538 LENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKE 597
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRK 86
+ + + R + +E +
Sbjct: 598 LKKKLKELEERLSQLEELLQSLELSEA 624
Score = 30.5 bits (69), Expect = 1.8
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
+ + +K + E ++ + E+ ++K ++ + E ++E ++ E EE EE+ E E
Sbjct: 636 ESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEE 695
Query: 66 RRRRRRRRKKEREKKRSS 83
+ R +E KK
Sbjct: 696 ELEQLREELEELLKKLGE 713
Score = 29.3 bits (66), Expect = 4.8
Identities = 19/90 (21%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKK----KKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
E +E +KE + + E ++ E++ K+E + ++E ++ E++ +E +++ E E EE
Sbjct: 466 ELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEE 525
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
+EE + + ++ E K + +
Sbjct: 526 ALKEELEEKLEKLENLLEELEELKEKLQLQ 555
Score = 29.0 bits (65), Expect = 5.9
Identities = 17/97 (17%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK---KKEKKKKEEEEGEEEEE 57
K+ +KK ++ +E+ + ++ + + + + E ++ EE+ + EK + E E +
Sbjct: 595 LKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQA 654
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEIS 94
EE + ++E ++ + + KL E+
Sbjct: 655 ALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELE 691
Score = 28.6 bits (64), Expect = 6.6
Identities = 13/81 (16%), Positives = 36/81 (44%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E + E ++ +++ + + EK + + ++ + E+ +EK ++ E E E + E +
Sbjct: 623 EAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQ 682
Query: 65 RRRRRRRRRKKEREKKRSSRR 85
+ + E E ++
Sbjct: 683 LEEKLEELEQLEEELEQLREE 703
Score = 28.6 bits (64), Expect = 6.7
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 8 KEKKKEKKK---EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
K K KE+K+ E EK +K + KE K+ + K E+ + + E E+ E E
Sbjct: 150 KSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALE 209
Query: 65 RRRRRRRRRKKEREKKRSSR 84
+ ++ ++ +E++
Sbjct: 210 EELKELKKLEEIQEEQEEEE 229
Score = 28.2 bits (63), Expect = 8.9
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
++ ++ E+ +K E ++ ++ + +K + E+ KKE +K EK + EE E
Sbjct: 698 EQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELRE 750
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 38.0 bits (89), Expect = 0.009
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR-R 65
++ + ++ + E+ +++E+ ++ + + ++ E E E EE GR
Sbjct: 142 ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGD 201
Query: 66 RRRRRRRRKKEREKKRSSRR 85
R RR RR++ ++ RR
Sbjct: 202 DRDRRDRREQGDRREERGRR 221
Score = 37.6 bits (88), Expect = 0.010
Identities = 13/73 (17%), Positives = 29/73 (39%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRK 74
+ E ++ +K + ++ + ++ +EEE E G+ E R+ R R +
Sbjct: 133 RGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGR 192
Query: 75 KEREKKRSSRRKP 87
+E + R
Sbjct: 193 REERGRDGDDRDR 205
Score = 34.9 bits (81), Expect = 0.067
Identities = 16/85 (18%), Positives = 43/85 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K + E+ + + + +++E+ +++ + +E+++ E ++ E EE +
Sbjct: 142 ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGD 201
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
+ RR RR + R++ER ++ R
Sbjct: 202 DRDRRDRREQGDRREERGRRDGGDR 226
Score = 34.9 bits (81), Expect = 0.070
Identities = 11/85 (12%), Positives = 37/85 (43%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ ++ +K + ++ + + + ++ E+++++E+++ +++ + E E
Sbjct: 133 RGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGR 192
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
R R R R+ RE+
Sbjct: 193 REERGRDGDDRDRRDRREQGDRREE 217
Score = 34.5 bits (80), Expect = 0.11
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 53 EEEEEGEEEGRRRRRRRRRRRKKERE 78
+ E G GRR R R RR R+
Sbjct: 254 DGEGRGGRRGRRFRDRDRRGRRGGDG 279
Score = 34.1 bits (79), Expect = 0.12
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 52 GEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKP 87
+ ++ GRR RR R R R+ R + R+P
Sbjct: 250 RDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREP 285
Score = 33.7 bits (78), Expect = 0.16
Identities = 13/84 (15%), Positives = 42/84 (50%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K E ++ E + + ++ ++++ ++++ +++ + + ++ + E +G++
Sbjct: 144 KAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDR 203
Query: 62 GRRRRRRRRRRRKKEREKKRSSRR 85
RR RR + RR++ + RR
Sbjct: 204 DRRDRREQGDRREERGRRDGGDRR 227
Score = 31.8 bits (73), Expect = 0.71
Identities = 15/85 (17%), Positives = 42/85 (49%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ E+ + + E+ ++E++ + +++ + ++ E ++ ++ + EE G + ++ +
Sbjct: 146 GEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR 205
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
RR + RR R + R RR
Sbjct: 206 RDRREQGDRREERGRRDGGDRRGRR 230
Score = 31.8 bits (73), Expect = 0.76
Identities = 9/85 (10%), Positives = 21/85 (24%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + ++ ++ + K E + E + E
Sbjct: 71 AAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARER 130
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
R RR RK ++ +
Sbjct: 131 RERGEAARRGAARKAGEGGEQPATE 155
Score = 31.0 bits (71), Expect = 1.1
Identities = 15/85 (17%), Positives = 45/85 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E ++ E + + + +++E+ ++ ++ +E ++ E ++ E+ ++EE + ++
Sbjct: 147 EGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRR 206
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
+ R + RR R +++ +R RR
Sbjct: 207 DRREQGDRREERGRRDGGDRRGRRR 231
Score = 30.6 bits (70), Expect = 1.6
Identities = 13/65 (20%), Positives = 29/65 (44%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
E+ + ++ K + ++ + + + EEE +E RRR R R+ + ER ++
Sbjct: 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERG 191
Query: 82 SSRRK 86
+
Sbjct: 192 RREER 196
Score = 30.6 bits (70), Expect = 1.8
Identities = 11/100 (11%), Positives = 24/100 (24%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + + ++ + K + E E +
Sbjct: 67 AATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQ 126
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDS 100
RR R RR R+ + + +A R +
Sbjct: 127 ARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEE 166
Score = 30.3 bits (69), Expect = 1.9
Identities = 17/85 (20%), Positives = 42/85 (49%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ + +++ +++++ E ++ E+ ++E++ + + ++E+ + EE G +
Sbjct: 168 ERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRR 227
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
RRRR RR R RE +
Sbjct: 228 GRRRRRDRRDARGDDNREDRGDRDG 252
Score = 30.3 bits (69), Expect = 2.1
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 49 EEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
E+ G+ + + E RR RR R R + R
Sbjct: 245 EDRGDRDGDDGEGRGGRRGRRFRDR---DRRGRRGGD 278
Score = 30.3 bits (69), Expect = 2.4
Identities = 8/113 (7%), Positives = 27/113 (23%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ + ++ ++ + + + + E E
Sbjct: 69 TPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQAR 128
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQ 113
E R R RR ++ + + T + + + +
Sbjct: 129 ERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDR 181
Score = 29.9 bits (68), Expect = 2.5
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKERE 78
+ E R RR RR ERE
Sbjct: 254 DGEGRGGRRGRRFRDRDRRGRRGGDGGNERE 284
Score = 29.1 bits (66), Expect = 5.3
Identities = 20/86 (23%), Positives = 47/86 (54%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++E++ E+++ +E ++ E ++ E+ +++E+ + + + + ++E+ + EE +
Sbjct: 164 TEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDG 223
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKP 87
G RR RRRRR R+ R R
Sbjct: 224 GDRRGRRRRRDRRDARGDDNREDRGD 249
Score = 28.7 bits (65), Expect = 5.8
Identities = 7/103 (6%), Positives = 22/103 (21%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
+ + ++ + K + + + E RR
Sbjct: 82 RAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGA 141
Query: 71 RRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQ 113
R+ E ++ ++ + D +
Sbjct: 142 ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAE 184
Score = 28.7 bits (65), Expect = 6.4
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRR 73
++ EG G R RR RR
Sbjct: 253 DDGEGRGGRRGRRFRDRDRRGRRGGD 278
Score = 28.3 bits (64), Expect = 8.6
Identities = 11/112 (9%), Positives = 26/112 (23%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ ++ ++ + K E + +
Sbjct: 67 AATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQ 126
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQ 113
R RR R R+ K +P + A + + R+ +
Sbjct: 127 ARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDR 178
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 37.9 bits (89), Expect = 0.010
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K++ +K E +KE++ EK KE + KK + EKKK+ + K+
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGP 214
Score = 36.0 bits (84), Expect = 0.044
Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
E K++ +K + +K++E +K ++ + KK E +KK++ + + +EG
Sbjct: 164 EIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGP--------- 214
Query: 69 RRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGY 105
+ K+ +K+ + + EI+ ++GY
Sbjct: 215 --VQIGKKIDKE-----EITPMKEINEEERRVVVEGY 244
Score = 34.8 bits (81), Expect = 0.084
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
KE+ ++ + +K++E +K K+ E KK E +KK++ K K+
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGP 214
Score = 34.4 bits (80), Expect = 0.11
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
E +KE++ EK ++ E KK + +K+K+ K K+ + KK +EE
Sbjct: 176 EAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 33.7 bits (78), Expect = 0.22
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+++ EK + +K++E +K K+ + KK E +KK++ K + +
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPK 211
Score = 32.9 bits (76), Expect = 0.32
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+K E +KE++ EK ++ + KK E +KKK+ K + K+ + ++ + EE
Sbjct: 172 LEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 32.9 bits (76), Expect = 0.33
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E K++ +K E +KE++ EK KE + +K + E+KK+ K +E
Sbjct: 164 EIDDSKEELEKFEAQKEEED-EKLAKEALEAMKKLEAEKKKQSKNFDPKEG 213
Score = 32.1 bits (74), Expect = 0.57
Identities = 13/47 (27%), Positives = 30/47 (63%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
KE+ ++ + +K+++++K ++ + KK + EKKK+ K + +EG
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGP 214
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 37.6 bits (88), Expect = 0.010
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDS----TIDGY 105
RRRRR RRRR++ R ++R RRK KL + +P++ I GY
Sbjct: 34 VRRRRRGRRRRRRRRRRRRRRRRKRKKLI-LKQWQPETIRKCKIKGY 79
Score = 37.6 bits (88), Expect = 0.010
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFK 89
RRRRR RRRRR + R ++R RR+ +
Sbjct: 29 RRRRRVRRRRRGRRRRRRRRRRRRRRR 55
Score = 36.1 bits (84), Expect = 0.034
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRK 86
RRRRRR RRRR+ R ++R RR+
Sbjct: 28 RRRRRRVRRRRRGRRRRRRRRRRR 51
Score = 35.3 bits (82), Expect = 0.053
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPF 88
GRRRRRRRRR R++ R ++ RR+
Sbjct: 15 GRRRRRRRRRARRRRRRRRVRRRRRGR 41
Score = 34.9 bits (81), Expect = 0.067
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 62 GRRRRRRRRRRRKKEREKKR 81
RRRRRRRRRRR++ R++K+
Sbjct: 41 RRRRRRRRRRRRRRRRKRKK 60
Score = 34.5 bits (80), Expect = 0.086
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRR 85
RRRR RRRRRR++ R ++R RR
Sbjct: 21 RRRRARRRRRRRRVRRRRRGRRR 43
Score = 34.5 bits (80), Expect = 0.10
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRR 85
RRR RRRRRRR+ R ++ RR
Sbjct: 22 RRRARRRRRRRRVRRRRRGRRRR 44
Score = 34.2 bits (79), Expect = 0.12
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRR 85
RRRRRRRR R++ R ++R RR
Sbjct: 25 ARRRRRRRRVRRRRRGRRRRRRR 47
Score = 34.2 bits (79), Expect = 0.14
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFK 89
RRRRR RRRRR++ ++R RR+ +
Sbjct: 20 RRRRRARRRRRRRRVRRRRRGRRRRRR 46
Score = 33.8 bits (78), Expect = 0.15
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 62 GRRRRRRRRRRRKKEREKKR 81
GRRRRRRRRRRR++ R K++
Sbjct: 40 GRRRRRRRRRRRRRRRRKRK 59
Score = 33.8 bits (78), Expect = 0.17
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRK 86
R RRRRRRRRR + R ++R RR+
Sbjct: 14 RGRRRRRRRRRARRRRRRRRVRRR 37
Score = 32.6 bits (75), Expect = 0.40
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPF 88
RRRRR R RRR++ R + R RR+
Sbjct: 8 RRRRRWRGRRRRRRRRRARRRRRRRR 33
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA
and EphB), according to their extracellular sequences,
which largely correspond to binding preferences for
either GPI-anchored ephrin-A ligands or transmembrane
ephrin-B ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form,
leading to the activation of the intracellular tyr
kinase domain. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). The main effect of ephrin/EphR interaction
is cell-cell repulsion or adhesion. Ephrin/EphR
signaling is important in neural development and
plasticity, cell morphogenesis and proliferation,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 37.3 bits (87), Expect = 0.010
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 124 KICDFGLARV-EEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
K+ DFGL+R E+ + + + APE + R +++A DVWS G + E++
Sbjct: 146 KVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAI-AYRKFTSASDVWSFGIVMWEVM 202
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal
Byr2-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Byr2-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae
and Cryptococcus neoformans Ste11, and related proteins.
They contain an N-terminal SAM (sterile alpha-motif)
domain, which mediates protein-protein interaction, and
a C-terminal catalytic domain. MAPKKKs phosphorylate and
activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which
in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Fission
yeast Byr2 is regulated by Ras1. It responds to
pheromone signaling and controls mating through the MAPK
pathway. Budding yeast Ste11 functions in MAPK cascades
that regulate mating, high osmolarity glycerol, and
filamentous growth responses.
Length = 267
Score = 37.1 bits (86), Expect = 0.010
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
K L YLH+ I+HRDIK N+LV++ +K
Sbjct: 117 KGLNYLHNRGIIHRDIKGANILVDNKGGIK 146
Score = 35.2 bits (81), Expect = 0.042
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 37/154 (24%)
Query: 124 KICDFGLARVEEPDP-----NKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAE 178
KI DFG+++ E + N A + ++ APE++ Y+ D+WS+GC+ E
Sbjct: 146 KISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTS-YTRKADIWSLGCLVVE 204
Query: 179 LLGRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLS 238
+L + F + +Q + I + +P
Sbjct: 205 MLTGKHPFPDCTQLQAIFKIGENA-SPEI------------------------------P 233
Query: 239 SQATGEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
S + EA+ L + D KR + L HP+L
Sbjct: 234 SNISSEAIDFLEKTFEIDHNKRPTAAELLKHPFL 267
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 37.3 bits (87), Expect = 0.010
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
K+K + E+ K E + E++ +EK+K+EE+ E +++ +E ++ + E R +
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLL 260
Query: 69 RRRRRKKEREKKRS 82
+ R E + +
Sbjct: 261 AEQERMLEHKLQEQ 274
Score = 36.9 bits (86), Expect = 0.012
Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK---EEKKKEKKKKEEEEGEEEEE 57
EK E ++ K + + E++ +K+KE+++ E +++ E K+ +K E E + E
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAE 262
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E + + + K+ + + S +K
Sbjct: 263 QERMLEHKLQEQEELLKEGFKTEAESLQK 291
Score = 29.2 bits (66), Expect = 3.7
Identities = 14/72 (19%), Positives = 35/72 (48%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRK 74
KEK + ++ K + + E++ EK+KE+++ E + +E ++ + R +
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLL 260
Query: 75 KEREKKRSSRRK 86
E+E+ + +
Sbjct: 261 AEQERMLEHKLQ 272
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 35.0 bits (81), Expect = 0.010
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 35 KKKEEKKKEKKKKEEEEGEEEEEG 58
EE+++E++++EEEE E EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEEA 96
Score = 34.2 bits (79), Expect = 0.019
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 36 KKEEKKKEKKKKEEEEGEEEEEGEEEG 62
E+++E++++EEEE EE EE G
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 32.3 bits (74), Expect = 0.087
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEE 61
E++++EEEE EEEEE EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
Score = 32.3 bits (74), Expect = 0.096
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+EE+++E++++EEEE EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEEAMA 98
Score = 31.9 bits (73), Expect = 0.12
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEEG 62
+E++++EEEE EEEEE EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEEA 96
Score = 31.6 bits (72), Expect = 0.17
Identities = 7/22 (31%), Positives = 18/22 (81%)
Query: 30 KKKEKKKKEEKKKEKKKKEEEE 51
E++++EE+++E++++E EE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEE 94
Score = 30.8 bits (70), Expect = 0.38
Identities = 9/28 (32%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 31 KKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
++++EE+++E++++EE E EE G
Sbjct: 73 AAAEEEEEEEEEEEEEEEESE-EEAMAG 99
Score = 30.4 bits (69), Expect = 0.43
Identities = 7/24 (29%), Positives = 19/24 (79%)
Query: 29 KKKKEKKKKEEKKKEKKKKEEEEG 52
+E++++EE+++E++++ EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEEA 96
Score = 28.9 bits (65), Expect = 1.4
Identities = 7/27 (25%), Positives = 19/27 (70%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGE 53
++E++++EE+++E+++ EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEEAMA 98
Score = 26.5 bits (59), Expect = 9.1
Identities = 4/21 (19%), Positives = 17/21 (80%)
Query: 19 KKKEKKKKEKKKKKEKKKKEE 39
E++++E+++++E++++ E
Sbjct: 73 AAAEEEEEEEEEEEEEEEESE 93
Score = 26.5 bits (59), Expect = 9.9
Identities = 5/23 (21%), Positives = 18/23 (78%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEE 39
+E++++E+++++E+++ EE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEE 94
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 35.3 bits (81), Expect = 0.010
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K++K+ ++KE K + +E ++ + EE+++ + EEEEGE EEE EE
Sbjct: 17 KEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEE 75
Score = 34.6 bits (79), Expect = 0.018
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ K ++KKE +EK+ + + +E +E + ++++E +E +EEEEGE
Sbjct: 9 AELSAKDLKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEG 68
Query: 61 EG 62
E
Sbjct: 69 EE 70
Score = 34.2 bits (78), Expect = 0.028
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++KKE +EK+ K E ++ ++ ++ ++EE+ E ++EE EGEEEE EE
Sbjct: 17 KEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEE 76
Query: 61 E 61
E
Sbjct: 77 E 77
Score = 33.0 bits (75), Expect = 0.063
Identities = 17/80 (21%), Positives = 39/80 (48%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+ ++KE K + E+ ++ + ++++E + +++++ E E EE EE EE
Sbjct: 20 KEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEET 79
Query: 62 GRRRRRRRRRRRKKEREKKR 81
+R + + E K+
Sbjct: 80 EGATGKRAAEDEEDDAETKK 99
Score = 32.6 bits (74), Expect = 0.088
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K ++KKE +EK+ K + ++ ++ E +++E+ +++EE E E E EE
Sbjct: 14 KDLKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEG 73
Score = 32.2 bits (73), Expect = 0.12
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKK-EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+ K + E + KEKK+ E+K+ K + EE ++ E EE EE +E +
Sbjct: 2 DTKVDAAAELSAKDLKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDD 61
Query: 60 EEG 62
EE
Sbjct: 62 EEE 64
Score = 30.7 bits (69), Expect = 0.41
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKE----------KKKKKEKKKKEEKKKEKKKKEEEEG 52
K K+K++ E+K+ K E + ++E++ E+ ++E+ + EEEEG
Sbjct: 14 KDLKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEG 73
Query: 53 EEEEEGEEEGRRR 65
EEEEE E +R
Sbjct: 74 EEEEETEGATGKR 86
Score = 29.2 bits (65), Expect = 1.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+ K + K KEKK+ E+K+ K E EE G +EG
Sbjct: 1 SDTKVDAAAELSAKDLKEKKEVVEEKENGKNAPANGNENEENGAQEG 47
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 37.8 bits (88), Expect = 0.010
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+K+ K + K+ +K KK K +K K ++ +KK E
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 37.0 bits (86), Expect = 0.017
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+ EKK + K KK K KK K ++ + K+ KKK E
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 35.5 bits (82), Expect = 0.055
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+ ++K K K +K K KK K +K K K+ KKK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 33.6 bits (77), Expect = 0.18
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
+KK K K KK+ +K KK K +K K K+ ++K E
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 33.6 bits (77), Expect = 0.19
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
+ ++K K K +K ++ KK K +K + K+ KKK E
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 32.8 bits (75), Expect = 0.34
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+ +KK K K KK +K K+ K +K K K KK+ E
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 32.0 bits (73), Expect = 0.57
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEK--------KKKKEKKKKEEKKKEKKKK 47
K ++K KK + K+ K+ + K+ + +K+ K K KK +K K
Sbjct: 734 VGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAK 788
Score = 31.6 bits (72), Expect = 0.83
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE 39
+ K + K+ ++ KK K +K K K+ KKK
Sbjct: 774 KAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 31.6 bits (72), Expect = 0.87
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKE------KKKKEEKKKEKKKKEEEEGEEEEEG 58
K ++K KK + KK K+++ KK + +++ K + KK+ + ++
Sbjct: 734 VGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAK 793
Query: 59 EEEGRRRRRRRRRRRKKERE 78
++ + +R +KK E
Sbjct: 794 TQKIAAATKAKRAAKKKVAE 813
Score = 31.3 bits (71), Expect = 1.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE 38
+ K KK +K +K K +K + K+ +KK E
Sbjct: 776 KPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 30.5 bits (69), Expect = 1.6
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK 40
+K K K +K K K+ K +K K K KK+
Sbjct: 773 KKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 30.1 bits (68), Expect = 2.6
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
K+++ K+ E + ++K K + KK +K K+ K +K
Sbjct: 753 KRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQK 796
Score = 29.3 bits (66), Expect = 4.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
KK K+++ K+ E + +K+ K K KK + KK K
Sbjct: 748 GKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAK 793
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 36.0 bits (84), Expect = 0.011
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
K++KKK+KKKKE + E+KKKK +E K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 35.6 bits (83), Expect = 0.014
Identities = 13/35 (37%), Positives = 27/35 (77%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK 41
K++KKK+KKK++ + ++KK+K E++K+++K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 34.1 bits (79), Expect = 0.042
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK 40
K+K+KKK+KKKE + E+KKK+ +E+K+ ++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 34.1 bits (79), Expect = 0.045
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
K KKK+KKKK++ + ++KKK+ EE+K+++K +
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAA 120
Score = 33.7 bits (78), Expect = 0.071
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+KK+KKK+KK+ + E+KKK+ E++K+ +K KK
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVP 129
Score = 31.4 bits (72), Expect = 0.38
Identities = 13/34 (38%), Positives = 26/34 (76%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+KKK+KKKK++ + E+KKK+ E++K++++
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 29.4 bits (67), Expect = 1.8
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
K KKK+KKK+K+ + ++K+KK +++KE++K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 29.1 bits (66), Expect = 2.4
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 28 KKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K+KKK+KKKK+E + ++KK++ EE
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEE 109
Score = 27.5 bits (62), Expect = 6.9
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
K+K+KKKKK+K+ + ++K+KK EE +E
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKE 112
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 36.9 bits (86), Expect = 0.011
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 363 AFKSLKYLHSARILHRDIKPGNLLVNSN 390
+ L YLH +++HRDIK N+L+ N
Sbjct: 122 TLRGLAYLHENKVIHRDIKGQNILLTKN 149
Score = 32.6 bits (75), Expect = 0.29
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVV-TQYYRAPEILMG----ARHYSAAVDVWSVG 173
K+ DFG++ + D + T Y+ APE++ Y A DVWS+G
Sbjct: 153 KLVDFGVSA--QLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLG 205
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 35.8 bits (83), Expect = 0.011
Identities = 12/58 (20%), Positives = 14/58 (24%), Gaps = 1/58 (1%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K K E E + KK+K E E E EE
Sbjct: 99 KPSKLELFNAALAEADG-GPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 35.4 bits (82), Expect = 0.017
Identities = 9/55 (16%), Positives = 13/55 (23%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K K E + + KKKK + + E E
Sbjct: 99 KPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEE 153
Score = 28.1 bits (63), Expect = 4.6
Identities = 9/48 (18%), Positives = 13/48 (27%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+ K K + + + E KKKK E E
Sbjct: 96 AEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAA 143
Score = 27.7 bits (62), Expect = 6.0
Identities = 10/53 (18%), Positives = 14/53 (26%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K E K K + + + KK+K E E E
Sbjct: 94 KVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAA 146
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 37.5 bits (86), Expect = 0.012
Identities = 23/92 (25%), Positives = 45/92 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+++ +K+ + K+ K + K KKE KK KK K ++ KEE E + ++ ++
Sbjct: 443 ERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEELELIKADDEDD 502
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
E + + ++ +K R ++K L E
Sbjct: 503 EQLDHFDMKSILKAEKFKKNRKLKKKASNLEE 534
Score = 33.6 bits (76), Expect = 0.19
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E EK K +E+++ +K+++ KK + + K K+E +K KK + E +E
Sbjct: 431 ETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKE 490
Query: 61 E 61
E
Sbjct: 491 E 491
Score = 32.8 bits (74), Expect = 0.36
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ K E EK K +E+++ K+++ KK K + + KKE K+ ++G+ E
Sbjct: 427 DDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIE 483
Score = 30.5 bits (68), Expect = 1.8
Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + + K E EK K + ++++ +K+++ KK K++ + K K+E ++ ++G+
Sbjct: 423 ESESDDKLETTIEKLDRKLR--ERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKH 480
Query: 61 E 61
Sbjct: 481 A 481
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 35.5 bits (82), Expect = 0.012
Identities = 22/85 (25%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ KE+KK+ K ++KE +K + + + +K++ E +E+K ++E E E +E ++
Sbjct: 28 KAAKEEKKQAKLSERKENRKPKYIGSLLEAAERRKREREIAEERKLQKEREKEGDEFADK 87
Query: 61 E----GRRRRRRRRRRRKKEREKKR 81
E +++ R+ +E EK+R
Sbjct: 88 EKFVTSAYKKQLEENRKLEEEEKER 112
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 36.9 bits (85), Expect = 0.012
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+L+++HS R++HRDIKP N+ + + ++K
Sbjct: 118 ALEHMHSRRVMHRDIKPANVFITATGVVK 146
Score = 32.3 bits (73), Expect = 0.38
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
V AT K+ D GL R A + V T YY +PE + Y+ D+WS+GC
Sbjct: 137 VFITATGVVKLGDLGLGRFFSSKTTAAHSL-VGTPYYMSPERIH-ENGYNFKSDIWSLGC 194
Query: 175 IFAEL 179
+ E+
Sbjct: 195 LLYEM 199
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 35.3 bits (82), Expect = 0.012
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 10/56 (17%)
Query: 1 EKKKEKKKEKKKEKKKEKK------KKEKKKKE----KKKKKEKKKKEEKKKEKKK 46
+++ K KEKKK+KKKE + +EKKK+E +KK +E KK+ E+ K +K
Sbjct: 72 AEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRIEQLKAARK 127
Score = 33.0 bits (76), Expect = 0.10
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK------KKEKKKKEEEE 51
+ +K++ + K +++++ K+KK+KKKKE + +EKKK+E E
Sbjct: 57 RGGRKRKAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAE 107
Score = 28.3 bits (64), Expect = 3.3
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 13/62 (20%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKK--------KEKKKKE-----EKKKEKKKKE 48
+K++ + K ++ +K KEKKKK+KK+ +EKKK+E +K +E KK+
Sbjct: 60 RKRKAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRI 119
Query: 49 EE 50
E+
Sbjct: 120 EQ 121
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 36.6 bits (84), Expect = 0.013
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ K K K+++ K ++ ++ K E+K+ ++++EEEE EEE + EE
Sbjct: 189 SVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 32.7 bits (74), Expect = 0.28
Identities = 16/55 (29%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
+ K K K+++ K ++ +E K +EK+ ++E++ EE+ +E+ K+EE +G ++
Sbjct: 191 QVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQE--EEEVEEEAKQEEGQGTDD 243
Score = 31.9 bits (72), Expect = 0.50
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
+ K K K+E+ K ++ +E K E+K+ +EE+ EEEE EEE ++
Sbjct: 189 SVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQ--EEEEVEEEAKQ 235
Score = 30.0 bits (67), Expect = 2.0
Identities = 11/55 (20%), Positives = 36/55 (65%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ K K K+++ K +E ++ K ++K+ ++++E+++ +++ ++EEG+ ++
Sbjct: 189 SVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 5.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 5, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK5 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK5 is mainly expressed in the brain. It
is not required for viability, but together with PAK6,
it is required for normal levels of locomotion and
activity, and for learning and memory. PAK5 cooperates
with Inca (induced in neural crest by AP2) in the
regulation of cell adhesion and cytoskeletal
organization in the embryo and in neural crest cells
during craniofacial development. PAK5 may also play a
role in controlling the signaling of Raf-1, an effector
of Ras, at the mitochondria.
Length = 292
Score = 36.9 bits (85), Expect = 0.014
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 33/150 (22%)
Query: 124 KICDFGL-ARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
K+ DFG A+V + P + V T Y+ APE++ Y VD+WS+G + E++
Sbjct: 158 KLSDFGFCAQVSKEVPKRKSL--VGTPYWMAPEVI-SRLPYGTEVDIWSLGIMVIEMIDG 214
Query: 183 RILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQAT 242
+ + P+Q + I D L + + +SS
Sbjct: 215 EPPYFNEPPLQAMRRIRDNL-------------------------PPRVKDSHKVSSVLR 249
Query: 243 GEAVHLLVQMLYFDPTKRISVNSALCHPYL 272
G L ML +P++R + L HP+L
Sbjct: 250 G----FLDLMLVREPSQRATAQELLQHPFL 275
Score = 31.5 bits (71), Expect = 0.74
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 362 AAFKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ ++L YLH+ ++HRDIK ++L+ S+ +K
Sbjct: 126 SVLRALSYLHNQGVIHRDIKSDSILLTSDGRIK 158
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 36.6 bits (85), Expect = 0.014
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+KKEK+KKE+ K +KK+ +K E+ +K KE G+ E+ E
Sbjct: 160 LLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVE 207
Score = 32.4 bits (74), Expect = 0.26
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E ++K+KEKK++ K ++K+ +K E+ + K+ + E+ E + G+++
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKK 215
Score = 29.7 bits (67), Expect = 2.1
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSR 84
+E +K +E +KK + KKE + + +E+EE + K R R+ R
Sbjct: 24 EEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLD----ESDMGDSDSKTRTTVRNLR 78
Score = 28.9 bits (65), Expect = 3.5
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKK--EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
E ++K+KEKK++ K +KK+ EK E+ K K+ + E + + G++++
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKKK 216
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 36.6 bits (85), Expect = 0.014
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 121 YSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
K+ DFGLAR+ + + + + + + APE +S DVWS G + E+
Sbjct: 141 LVCKVADFGLARLIK-EDVYLSSDKKIPYKWTAPEAA-SHGTFSTKSDVWSFGILLYEMF 198
Query: 181 GR 182
Sbjct: 199 TY 200
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 36.9 bits (86), Expect = 0.015
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE---GEEEEE 57
K + ++ K K+ + + K +KK +++K KK + ++K +E GEE E
Sbjct: 62 RKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEIAE 121
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
+ + R + + + P +L+ I
Sbjct: 122 MMRDEKVPIRELEEIPPEFVALYKQEIQSPTRLNLI 157
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 34.9 bits (80), Expect = 0.015
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK----EEKKKEKKKKE 48
K + KEKK EK K K+KKK KKKKKE+ ++ +E+ +K +KE
Sbjct: 3 PKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKE 53
Score = 29.9 bits (67), Expect = 0.84
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
K + K++K +K K + KKK KKK+K++
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEAR 37
Score = 27.2 bits (60), Expect = 5.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
K + K++K +K K K KKK KKK++++
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEAR 37
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast)
and GNL3L (human) are putative GTPases which are
required for growth and play a role in processing of
nucleolar pre-rRNA. This family contains a potential
nuclear localisation signal.
Length = 80
Score = 34.2 bits (79), Expect = 0.016
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK---------EEEEGEEEEEGEEEGRR 64
+ + K +K+ + +K +KE KK K +KKK +EE EE EE + +
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQEE 60
Query: 65 RRRRRRRRRKKEREKKRSS 83
+ RR+ RK ER + R
Sbjct: 61 EKERRKEARKAERAEARKR 79
Score = 28.8 bits (65), Expect = 1.2
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 18/72 (25%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKK------------------EKKKKKEKKKKEEKKKE 43
K E ++ +KE KK K KKKK E+KK+K++++KE +K+
Sbjct: 9 KVAEHHRKLRKEAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQEEEKERRKEA 68
Query: 44 KKKKEEEEGEEE 55
+K + E +
Sbjct: 69 RKAERAEARKRG 80
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 36.5 bits (85), Expect = 0.016
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPE-ILMGARHYSAAVDVWSVGCIFAEL 179
KI DFGLAR+ E D A + APE G ++ DVWS G + E+
Sbjct: 143 KIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYG--RFTIKSDVWSFGILLTEI 197
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 37.1 bits (86), Expect = 0.016
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
+K + K EK K+K K +KKKK K E K + K +
Sbjct: 116 RKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKS 159
Score = 33.3 bits (76), Expect = 0.25
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 26/82 (31%)
Query: 1 EKKKEKKKEKKKEKKK--------------------------EKKKKEKKKKEKKKKKEK 34
+ KK K K+KKK KKK +K K K EK KKK
Sbjct: 71 DSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKIT 130
Query: 35 KKKEEKKKEKKKKEEEEGEEEE 56
K KK+KK ++ +
Sbjct: 131 VNKSTNKKKKKVLSSKDELIKY 152
Score = 32.5 bits (74), Expect = 0.47
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+K + K EK K+K K KKKK+ K++ K + K K
Sbjct: 116 RKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 32.1 bits (73), Expect = 0.53
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
KK KK K + K KK K K+KK+ KKK + + K ++
Sbjct: 58 KKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRK 117
Query: 63 RRRRRRR------RRRRKKEREKKRSSRRKPFKLSEIS 94
+ + + + +++KK S + + +
Sbjct: 118 PKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNN 155
Score = 31.7 bits (72), Expect = 0.70
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 28/84 (33%)
Query: 1 EKKKEKKKEKKKEKKKEKKK----------------------------KEKKKKEKKKKK 32
+ K+ KK K K+KKK KKK K K + +K K
Sbjct: 67 DDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLK 126
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEE 56
+K + +KKKK +E
Sbjct: 127 KKITVNKSTNKKKKKVLSSKDELI 150
Score = 31.7 bits (72), Expect = 0.76
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
KK +K +KK +K K K+ KK K K+KK+ KKK + + + + ++
Sbjct: 48 INKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFA 107
Query: 64 RRRR---RRRRRRKKEREKKRSSRRK 86
R+ + K E+ KK+ + K
Sbjct: 108 GPLAISLMRKPKPKTEKLKKKITVNK 133
Score = 30.6 bits (69), Expect = 1.5
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
K + +K KKK + K+KKK K + K K K
Sbjct: 118 PKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKS 159
Score = 29.0 bits (65), Expect = 6.0
Identities = 21/93 (22%), Positives = 39/93 (41%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK +K K+ K + KK K K++KK KK+ ++ K +
Sbjct: 54 EKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAIS 113
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
R+ + + + +KK K ++++K LS
Sbjct: 114 LMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSK 146
>gnl|CDD|223682 COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease
component [Inorganic ion transport and metabolism].
Length = 334
Score = 36.5 bits (85), Expect = 0.016
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 11/60 (18%)
Query: 153 APEI---LMGARHY----SAAVDVWSVGCIFAELLGRRILFQAQSPVQQLGLITDLLGTP 205
AP I L+G H +A+ + ++ + A++L R IL A+ PV G++T L+G P
Sbjct: 265 APHIARLLVGNDHRYLLPLSAL-LGALLLLLADILARTILAPAEIPV---GIVTALIGAP 320
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 36.2 bits (84), Expect = 0.017
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 4 KEKKKEKKKEKKKEKKKKEK--------KKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
K+ KK KE+K K K K +K++K+ KEEKK K +KE+ E E
Sbjct: 65 KDFKKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
Score = 34.6 bits (80), Expect = 0.053
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+ +KE+KK KE+KK K +KEK +++ + KEK
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYGFCILDGHKEK 134
Score = 32.3 bits (74), Expect = 0.28
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Query: 3 KKEKKKEKKKEKK---------KEKKKKEKK---KKEKKKKKEKKKKEEKK 41
KE+K K K + +K+EKK K+EKK K +K+K E++
Sbjct: 72 TKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
Score = 30.8 bits (70), Expect = 0.93
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKK 31
+ +KE+KK KE+KK K EK+K E++
Sbjct: 95 KAQKEEKKAMSKEEKK-AIKAEKEKLEEEYG 124
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 36.3 bits (84), Expect = 0.017
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK-------KEEEEGE 53
K +E KK KK E+K KE K++++KK ++ +
Sbjct: 108 PKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESATSPESSPSSTPNSSRPST 167
Query: 54 EEEEGEEEGRRRRRR--RRRRRKKEREKKRSSRRKP 87
+EG RR + + ++S + K
Sbjct: 168 PHLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKA 203
Score = 30.5 bits (69), Expect = 1.6
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+ KK K +K + K +K +K +K + +G+E++
Sbjct: 178 SRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRKWDLDGDEDD 223
Score = 30.1 bits (68), Expect = 1.6
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK 35
++ KK K +K K K KK KK
Sbjct: 178 SRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKK 211
Score = 29.7 bits (67), Expect = 2.1
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
KK K EK K K +K KK +K + ++
Sbjct: 181 AKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRKWDLDGDEDDDAV 226
>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 3.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 3 (TAO3) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO3 is also known as JIK (JNK inhibitory kinase) or KFC
(kinase from chicken). It specifically activates c-Jun
N-terminal kinase (JNK), presumably by phosphorylating
and activating MKK4/MKK7. In Saccharomyces cerevisiae,
TAO3 is a component of the RAM (regulation of Ace2p
activity and cellular morphogenesis) signaling pathway.
TAO3 is upregulated in retinal ganglion cells after
axotomy, and may play a role in apoptosis.
Length = 313
Score = 36.5 bits (84), Expect = 0.018
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEIL--MGARHYSAAVDVWSVGCIFAELLG 181
K+ DFG A P V T Y+ APE++ M Y VDVWS+G EL
Sbjct: 161 KLADFGSASKSSP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 215
Query: 182 RR 183
R+
Sbjct: 216 RK 217
Score = 33.8 bits (77), Expect = 0.11
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 362 AAFKSLKYLHSARILHRDIKPGNLLV 387
A + L YLHS ++HRDIK GN+L+
Sbjct: 129 GALQGLAYLHSHNMIHRDIKAGNILL 154
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 36.8 bits (86), Expect = 0.018
Identities = 12/75 (16%), Positives = 27/75 (36%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
E++K ++ + KK + + K K + K KK + + +
Sbjct: 463 EREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAA 522
Query: 69 RRRRRKKEREKKRSS 83
R R+ + R ++
Sbjct: 523 REARKAQARARQAEK 537
Score = 33.8 bits (78), Expect = 0.17
Identities = 13/76 (17%), Positives = 30/76 (39%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++K ++ + K+ + + K+K + K KK + K +
Sbjct: 463 EREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAA 522
Query: 61 EGRRRRRRRRRRRKKE 76
R+ + R R+ +K+
Sbjct: 523 REARKAQARARQAEKQ 538
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 36.2 bits (84), Expect = 0.018
Identities = 15/27 (55%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 365 KSLKYLHSA-RILHRDIKPGNLLVNSN 390
K+L+YLHS ++HRD+KP N+L+N N
Sbjct: 114 KALEYLHSKLSVIHRDVKPSNVLINRN 140
Score = 33.2 bits (76), Expect = 0.19
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 124 KICDFGLA--RVEEPDPNKAMTQEVVTQYYRAPEIL---MGARHYSAAVDVWSVGCIFAE 178
K+CDFG++ V+ + A T + + Y APE + + + Y DVWS+G E
Sbjct: 144 KLCDFGISGYLVD----SVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIE 199
Query: 179 L-LGRRILFQAQSPVQQL 195
L GR ++P QQL
Sbjct: 200 LATGRFPYDSWKTPFQQL 217
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 36.5 bits (85), Expect = 0.018
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
KE+++KEK+KK +K+ KEE++ + K EE E
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
Score = 30.4 bits (69), Expect = 1.6
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEE 39
+++EK+KEKK K++ K+E++ + K EE
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
Score = 29.6 bits (67), Expect = 2.8
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 25 KKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+ ++K+KEKK K+E K+E++ + + EE E
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
>gnl|CDD|236720 PRK10577, PRK10577, iron-hydroxamate transporter permease subunit;
Provisional.
Length = 668
Score = 36.7 bits (86), Expect = 0.019
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 153 APEI--LMGARHYSAAVDVWSVGCI------FAELLGRRILFQAQSPVQQLGLITDLLGT 204
AP + ++G R + + A+ LGR +LF Q P GL+ L+G
Sbjct: 601 APHLARMLGGRRARPQL--VLAALLGALLMVLADWLGRTLLFPYQIPA---GLLAALIGA 655
Query: 205 P 205
P
Sbjct: 656 P 656
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 33.8 bits (78), Expect = 0.021
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
E K K+KK+E+++ +E+ E+ KKEEE E+ + G
Sbjct: 47 EVTDKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAGC 87
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 36.7 bits (85), Expect = 0.021
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
KK + K K KK K EK KK EK K+ E+E
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKE 715
Score = 29.0 bits (65), Expect = 5.5
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKK--KEKKKKEE-------KKKEKKK 46
+K + K K KK K EK KK K KE K KKK
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEIFGDKFTKKK 725
>gnl|CDD|214998 smart01054, CaM_binding, Plant calmodulin-binding domain. The
sequences featured in this family are found repeated in
a number of plant calmodulin-binding proteins, and are
thought to constitute the calmodulin-binding domains..
Binding of the proteins to calmodulin depends on the
presence of calcium ions.. These proteins are thought
to be involved in various processes, such as plant
defence responses.and stolonisation or tuberization.
Length = 115
Score = 34.3 bits (79), Expect = 0.022
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K+ + K + + + E+ +K K K+ K K E K+ +E E E E
Sbjct: 4 KKEFRRGKIEDPKPEGERPRKWKFLKKVILLKRFVKSLEDKRRLNPREPNVLPTEVEPEA 63
Query: 61 EGRRRRRRRRRRRKKERE 78
E R + +K E
Sbjct: 64 EKVVLRHQDVGEKKNSEE 81
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 36.5 bits (85), Expect = 0.022
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRR 66
+KKK++KK++ +K+ +E +++ E+E+ + E GE R+R
Sbjct: 176 GHSSDSEKKKQRKKQR-RKRSKELREDDDDDEDEDDDGEGGGEGGEERQR 224
Score = 35.4 bits (82), Expect = 0.040
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
+KKK+ KK++ ++ KE ++ ++++ +E+++GE G R+R
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEERQR 224
Score = 33.8 bits (78), Expect = 0.14
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
+KKK++KK+ +K+ KE ++ ++ +E+E ++ E G E G R+R
Sbjct: 178 SSDSEKKKQRKKQRRKRSKELREDDD-------DDEDEDDDGEGGGEGGEERQR 224
Score = 33.1 bits (76), Expect = 0.26
Identities = 12/55 (21%), Positives = 30/55 (54%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRR 71
+ +KKK++KK+ K+ ++ ++++++ E+E++ E G R+R
Sbjct: 170 GLVGVPGHSSDSEKKKQRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEERQR 224
>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine
Kinases, Fibroblast Growth Factor Receptors. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor (FGFR) subfamily; catalytic (c) domain. The
FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K).PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with three
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
FGFRs to their ligands, the FGFs, and to heparin/heparan
sulfate (HS) results in the formation of a ternary
complex, which leads to receptor dimerization and
activation, and intracellular signaling. There are at
least 23 FGFs and four types of FGFRs. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. FGF/FGFR signaling is
important in the regulation of embryonic development,
homeostasis, and regenerative processes. Depending on
the cell type and stage, FGFR signaling produces diverse
cellular responses including proliferation, growth
arrest, differentiation, and apoptosis. Aberrant
signaling leads to many human diseases such as skeletal,
olfactory, and metabolic disorders, as well as cancer.
Length = 293
Score = 36.2 bits (84), Expect = 0.022
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFGLAR + D + T + + APE L R Y+ DVWS G + E+
Sbjct: 172 KIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALF-DRVYTHQSDVWSFGVLLWEIF 228
Score = 28.1 bits (63), Expect = 7.7
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+++L S + +HRD+ N+LV + ++K
Sbjct: 145 MEFLASKKCIHRDLAARNVLVTEDHVMK 172
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 36.6 bits (85), Expect = 0.022
Identities = 16/104 (15%), Positives = 48/104 (46%), Gaps = 27/104 (25%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKK---------------------------KEKKKKKE 33
E+ K +++ K + K +++++++K +E+ ++
Sbjct: 584 EETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNR 643
Query: 34 KKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
++ +++ + ++ ++ E E+ +E+ + RR R+RRR E+
Sbjct: 644 RQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEK 687
Score = 36.2 bits (84), Expect = 0.033
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
E+ K +++ + + E ++ RR+ R+ RR + ER R +R
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQD--RRKPRQNNRRDRNERRDTRDNRT 628
Score = 33.5 bits (77), Expect = 0.24
Identities = 10/63 (15%), Positives = 27/63 (42%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
E+ K +++ K + K +++++ +K + + + + R R R R+
Sbjct: 584 EETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNR 643
Query: 77 REK 79
R+
Sbjct: 644 RQA 646
Score = 32.7 bits (75), Expect = 0.43
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRR--------KKEREKKRSSR 84
E+ K +E+ K + + E ++ + + RR R RR R ++ RE+ R +R
Sbjct: 584 EETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNR 643
Query: 85 RKP 87
R+
Sbjct: 644 RQA 646
Score = 31.9 bits (73), Expect = 0.67
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E+ K +++ K + K E+++ +++K ++ +++ ++ + E E EE R
Sbjct: 584 EETKPQEQPAPKAEAKPERQQ-DRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRN 642
Query: 65 RRRR-------RRRRRKKEREKKRSSRRKP 87
RR+ R ++ + EK R+ +
Sbjct: 643 RRQAQQQTAETRESQQAEVTEKARTQDEQQ 672
Score = 29.6 bits (67), Expect = 3.5
Identities = 12/58 (20%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKK---EKKKKEEEEGEEEEEGEEEGRRRRRRRRRRR 73
+ ++++++ ++++++++ +EK++ E K EE +E +EE ++ + RR++R
Sbjct: 666 RTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQR 723
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 36.8 bits (85), Expect = 0.022
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR-RRRRKKEREKKRSSR 84
+EK+++ EK KEE ++E++ +E+ EEE+ E R + + +RR+K + + +
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKKAS 311
Query: 85 R 85
R
Sbjct: 312 R 312
Score = 33.7 bits (77), Expect = 0.19
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 12/75 (16%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
+EK+++ +K KE+ ++E + +E++++EEE+ E + R + K E EK+
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEAD------------RAQAKAEVEKR 299
Query: 81 RSSRRKPFKLSEISA 95
R + K + SA
Sbjct: 300 REKLQNLLKKASRSA 314
Score = 33.3 bits (76), Expect = 0.25
Identities = 15/57 (26%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
+EK++E +K K++ E++++ E E++++E++K E + + E E RR + +
Sbjct: 252 EEKRRELEKLAKEEAERERQAE----EQRRREEEKAAMEADRAQAKAEVEKRREKLQ 304
Score = 32.1 bits (73), Expect = 0.55
Identities = 15/50 (30%), Positives = 35/50 (70%), Gaps = 6/50 (12%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK------KKEKKKKEEKKKEK 44
EK++E +K K+E ++E++ +E++++E++K + + K + EK++EK
Sbjct: 253 EKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
Score = 31.8 bits (72), Expect = 0.77
Identities = 15/51 (29%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+EK++E +K KE+ ++E++ +E+++++E+K E + + K E E+ E
Sbjct: 252 EEKRRELEK-LAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRRE 301
Score = 30.6 bits (69), Expect = 1.6
Identities = 12/50 (24%), Positives = 33/50 (66%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
++K ++ EK KE+ ++E++ +++++++EEK + + + + E E+ E
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRRE 301
Score = 30.6 bits (69), Expect = 1.8
Identities = 12/53 (22%), Positives = 33/53 (62%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
E+K++E +K K++ + +++ EE+++ +++K E + + E +RR + +
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQ 304
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 36.3 bits (84), Expect = 0.022
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+L+YLHS I++RD+KP N+L++ +K
Sbjct: 113 ALEYLHSKEIVYRDLKPENILLDKEGHIK 141
Score = 29.3 bits (66), Expect = 3.1
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
K+ DFG A+ + D + T Y APE++ H + AVD W++G + E+L
Sbjct: 141 KLTDFGFAK-KLRDRTWTLCG---TPEYLAPEVIQSKGH-NKAVDWWALGILIYEML 192
>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C theta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), theta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta
is selectively expressed in T-cells and plays an
important and non-redundant role in several aspects of
T-cell biology. Although T-cells also express other PKC
isoforms, PKC-theta is unique in that upon antigen
stimulation, it is translocated to the plasma membrane
at the immunological synapse, where it mediates signals
essential for T-cell activation. It is essential for
TCR-induced proliferation, cytokine production, T-cell
survival, and the differentiation and effector function
of T-helper (Th) cells, particularly Th2 and Th17.
PKC-theta is being developed as a therapeutic target for
Th2-mediated allergic inflammation and Th17-mediated
autoimmune diseases.
Length = 316
Score = 36.1 bits (83), Expect = 0.024
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVV-TQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFG+ + E A T T Y APEIL+G + Y+ +VD WS G + E+L
Sbjct: 136 KIADFGMCK--ENMLGDAKTCTFCGTPDYIAPEILLGQK-YNTSVDWWSFGVLLYEML 190
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 36.2 bits (83), Expect = 0.025
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL-LGR 182
K+CDFG V + V T+ Y +PE L G HYS D+WS+G EL +GR
Sbjct: 144 KLCDFG---VSGQLIDSMANSFVGTRSYMSPERLQGT-HYSVQSDIWSMGLSLVELAIGR 199
Score = 33.1 bits (75), Expect = 0.20
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 332 SVQQVKEEMHKFIAEQLNTSRVPLCINPQSAAFKSLKYLHSA-RILHRDIKPGNLLVNS 389
S+ QV +E + E L + A + L YL +I+HRD+KP N+LVNS
Sbjct: 89 SLDQVLKEAKRIPEEILGKVSI--------AVLRGLAYLREKHQIMHRDVKPSNILVNS 139
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 36.2 bits (83), Expect = 0.025
Identities = 13/24 (54%), Positives = 21/24 (87%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLV 387
++L+YLHS +I+HRD+K GN+L+
Sbjct: 120 LEALQYLHSMKIIHRDLKAGNVLL 143
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 36.5 bits (85), Expect = 0.026
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 1 EKKKEKKKEKKK-EKKKEKKKKEKKKKEKK---KKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+ E + EK+ EK +KE + EKK + K EE +++K+K E +
Sbjct: 807 AGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLA 866
Query: 57 EGEEE 61
+ EE
Sbjct: 867 KLEER 871
Score = 33.8 bits (78), Expect = 0.20
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKK--KK-------EKKKKEEKKKEKKKKEEEEG 52
+ E + +K+ EK +KE + KK K +E +KEK+K E +
Sbjct: 804 LPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQV 863
Query: 53 EEEE 56
+ +
Sbjct: 864 KLAK 867
Score = 31.8 bits (73), Expect = 0.66
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 1 EKKKEK-KKEKKKEKKK-------EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
EK+ EK +KE + +KK K +E +KEK+K E + K K +E+ +
Sbjct: 820 EKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLAVLKA 877
>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 1.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 1 (TAO1) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO1 is sometimes referred to as prostate-derived
sterile 20-like kinase 2 (PSK2). TAO1 activates the p38
MAPK through direct interaction with and activation of
MEK3. TAO1 is highly expressed in the brain and may play
a role in neuronal apoptosis. TAO1 interacts with the
checkpoint proteins BubR1 and Mad2, and plays an
important role in regulating mitotic progression, which
is required for both chromosome congression and
checkpoint-induced anaphase delay. TAO1 may play a role
in protecting genomic stability.
Length = 317
Score = 35.8 bits (82), Expect = 0.027
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEIL--MGARHYSAAVDVWSVGCIFAELLG 181
K+ DFG A + P V T Y+ APE++ M Y VDVWS+G EL
Sbjct: 165 KLADFGSASIASP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 219
Query: 182 RR 183
R+
Sbjct: 220 RK 221
Score = 34.3 bits (78), Expect = 0.095
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 362 AAFKSLKYLHSARILHRDIKPGNLLV 387
A + L YLHS ++HRDIK GN+L+
Sbjct: 133 GALQGLAYLHSHNMIHRDIKAGNILL 158
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs
are predominantly nuclear proteins. They are widely
expressed in many tissues including heart, brain, lung,
liver, kidney, and pancreas. There are two isoforms of
MSK, called MSK1 and MSK2.
Length = 288
Score = 35.9 bits (83), Expect = 0.027
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILM-GARHYSAAVDVWSVGCIFAELL 180
+ DFGL++ + + T Y APE++ G+ + AVD WS+G + ELL
Sbjct: 145 VLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELL 202
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 34.1 bits (79), Expect = 0.027
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK 41
K+EKKK+KKK + + +KKEKK+ E++K ++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 30.7 bits (70), Expect = 0.40
Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 3 KKEKKKEKKKEKKK--EKKKKEKKKKEKKKKKEKK 35
K+EKKK+KKK + + +KK++K+ E++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 29.1 bits (66), Expect = 1.3
Identities = 13/35 (37%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 14 KKKEKKKKEKKKKE--KKKKKEKKKKEEKKKEKKK 46
K+++KKKK+K + E +KK++K+ E++K ++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 28.7 bits (65), Expect = 2.0
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 1 EKKKEKKKEKK---KEKKKEKKKKEKKKKEKKK 30
EKKK+KKK + EKK++K+ E++K ++K
Sbjct: 40 EKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 28.0 bits (63), Expect = 3.0
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 20 KKEKKKKEKKKKKE--KKKKEEKKKEKKKKE 48
K+EKKKK+KK + E +KKE+K+ +++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKA 68
Score = 28.0 bits (63), Expect = 3.6
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Query: 18 KKKKEKKKKEK----KKKKEKKKKEEKKKEKKKK 47
++KK+KKKK + +KKEKK+ E++K +K
Sbjct: 39 REKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 27.2 bits (61), Expect = 6.1
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEE 49
++KK+KKKK E + EKK++K+ E+
Sbjct: 39 REKKKKKKKSEGEFFAEKKEKKEVSEQ 65
Score = 26.8 bits (60), Expect = 8.0
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
K++K+KKKKK + + +KKEKK+ E+
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQ 65
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 33.4 bits (77), Expect = 0.027
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 36 KKEEKKKEKKKKEEEEGEEEEE 57
E++KKEEEE EEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 33.0 bits (76), Expect = 0.045
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 35 KKKEEKKKEKKKKEEEEGEEEE 56
+E+KK+EEEE EE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 30.7 bits (70), Expect = 0.28
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 31 KKEKKKKEEKKKEKKKKEEEEG 52
EE+KKE++++EEE+
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.32
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEG 58
++EKK++EEEE E+++ G
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDDDMG 84
Score = 29.9 bits (68), Expect = 0.47
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 30 KKKEKKKKEEKKKEKKKKEEEE 51
+EEKK+E++++EE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 27.6 bits (62), Expect = 3.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 41 KKEKKKKEEEEGEEEEEGEEEG 62
EEE+ EEEEE EE+
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 27.2 bits (61), Expect = 4.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 39 EKKKEKKKKEEEEGEEEEEGEEE 61
+EE++ EEEEE E++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 35.8 bits (82), Expect = 0.029
Identities = 11/29 (37%), Positives = 23/29 (79%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+++++HS R++HRDIKP N+ + + ++K
Sbjct: 118 AVEHMHSRRVMHRDIKPANVFITATGVVK 146
Score = 32.3 bits (73), Expect = 0.40
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
V AT K+ D GL R A + V T YY +PE + Y+ D+WS+GC
Sbjct: 137 VFITATGVVKLGDLGLGRFFSSKTTAAHSL-VGTPYYMSPERIH-ENGYNFKSDIWSLGC 194
Query: 175 IFAEL 179
+ E+
Sbjct: 195 LLYEM 199
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family.
They are activated by signaling inputs from
extracellular regulated kinase (ERK) and
phosphoinositide dependent kinase 1 (PDK1). ERK
phosphorylates and activates the CTD of RSK, serving as
a docking site for PDK1, which phosphorylates and
activates the NTD, which in turn phosphorylates all
known RSK substrates. RSKs act as downstream effectors
of mitogen-activated protein kinase (MAPK) and play key
roles in mitogen-activated cell growth, differentiation,
and survival. Mammals possess four RSK isoforms (RSK1-4)
from distinct genes. RSK proteins are also referred to
as MAP kinase-activated protein kinases (MAPKAPKs),
p90-RSKs, or p90S6Ks.
Length = 318
Score = 35.9 bits (83), Expect = 0.030
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFGL++ E D K T Y APE++ R ++ + D WS G + E+L
Sbjct: 138 KLTDFGLSK-ESIDHEKKAYSFCGTVEYMAPEVV-NRRGHTQSADWWSFGVLMFEMLTGS 195
Query: 184 ILFQAQSPVQQLGLITDL-LGTP---TPE 208
+ FQ + + + +I LG P +PE
Sbjct: 196 LPFQGKDRKETMTMILKAKLGMPQFLSPE 224
Score = 29.0 bits (65), Expect = 4.4
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 366 SLKYLHSARILHRDIKPGNLLVN 388
+L +LHS I++RD+KP N+L++
Sbjct: 110 ALDHLHSLGIIYRDLKPENILLD 132
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 35.5 bits (82), Expect = 0.030
Identities = 20/96 (20%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKK------EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
++++EK++E+ + +++ K+K +K ++ K++ K KKE + E
Sbjct: 113 KQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPE 172
Query: 55 EEEGEEEGRRR----RRRRRRRRKKEREKKRSSRRK 86
+EE ++R ++ ++++++RE++R +RK
Sbjct: 173 RNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRK 208
Score = 34.7 bits (80), Expect = 0.065
Identities = 17/76 (22%), Positives = 40/76 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K++ K +K+ + K E+ +E+ KK ++ E KK ++++ + EEE +
Sbjct: 146 AKQRTPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRK 205
Query: 61 EGRRRRRRRRRRRKKE 76
+ ++++ R++K E
Sbjct: 206 QRKKQQEEEERKQKAE 221
Score = 34.3 bits (79), Expect = 0.072
Identities = 15/46 (32%), Positives = 39/46 (84%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
+E+ K++ +E + +K K++++K+E++++K++KK++E+++ K+K EE
Sbjct: 177 QEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 33.9 bits (78), Expect = 0.096
Identities = 12/45 (26%), Positives = 37/45 (82%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
KK +++++K++E++++++KK+++++E+K+K E+ ++ K K++
Sbjct: 190 KKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQR 234
Score = 33.2 bits (76), Expect = 0.19
Identities = 12/51 (23%), Positives = 41/51 (80%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E+ +++ KK+ ++ E KK +++++++++++ K++K+++++E++K++ EE
Sbjct: 172 ERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 32.4 bits (74), Expect = 0.31
Identities = 17/54 (31%), Positives = 41/54 (75%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K ++ ++E KK+ ++ + KK K++++K+EE++++++KK++EE E +++ EE
Sbjct: 169 AKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 31.6 bits (72), Expect = 0.59
Identities = 14/54 (25%), Positives = 35/54 (64%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+ +E + K+ +++KK +K E+K+K+E++K+ E+ + +++ +E+ EE
Sbjct: 83 RQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEE 136
Score = 30.5 bits (69), Expect = 1.5
Identities = 15/46 (32%), Positives = 39/46 (84%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
KK+ ++ E KK K++++K++E+++K++KK++E++++++K +E +K
Sbjct: 181 KKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 30.1 bits (68), Expect = 1.8
Identities = 12/49 (24%), Positives = 38/49 (77%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
E+ K++ +E + +K K++++K ++++ K++KK+++++E K+K ++ ++
Sbjct: 178 EEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 29.7 bits (67), Expect = 2.4
Identities = 14/54 (25%), Positives = 41/54 (75%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K E+ +++ KK+ ++ + KK K++++K+E+++++++KK+++++E ++ EE
Sbjct: 169 AKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 29.3 bits (66), Expect = 3.0
Identities = 20/101 (19%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 4 KEKKKEKKKEKKKE-----KKKKEKKKKEK-KKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ K+ K + + +E K+ ++++K +K E+K+K+E++KE+++ E + +E+
Sbjct: 74 RSLKEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEK 133
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRP 98
EE R++ ++ ++R + +K+ + R
Sbjct: 134 YEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERN 174
Score = 28.5 bits (64), Expect = 5.5
Identities = 12/54 (22%), Positives = 39/54 (72%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ ++ +E+ K++ ++ + KK K+++++++++ K+++K+++EEE ++ EE
Sbjct: 169 AKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 35.7 bits (83), Expect = 0.031
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 146 VVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
V T+ Y APE++ G H +AVD W++G + E+L
Sbjct: 193 VGTEEYIAPEVISGDGH-GSAVDWWTLGILLYEML 226
Score = 29.9 bits (68), Expect = 2.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSN 390
L+YLH I++RD+KP N+L++ +
Sbjct: 116 LEYLHLLGIVYRDLKPENILLHES 139
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 36.2 bits (84), Expect = 0.032
Identities = 23/89 (25%), Positives = 45/89 (50%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
K KE+++ ++KE ++E++++ +K KK EE + +++ E E EE + E +
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 65 RRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
R R++ R+K R R + I
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDRRI 483
Score = 33.5 bits (77), Expect = 0.18
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK------------EEKKKEKKKKE 48
K++E+ +EK+ +++E+++ +K KK +E ++ EE K+E +K E
Sbjct: 397 VKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLE 456
Query: 49 EEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E E ++ R+ R R R R+ ER +K +K
Sbjct: 457 SELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK 494
Score = 33.5 bits (77), Expect = 0.21
Identities = 17/82 (20%), Positives = 42/82 (51%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
K + +E K+E +K E + + +++ K +++++ + + E E+E E +++
Sbjct: 442 KRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501
Query: 68 RRRRRRKKEREKKRSSRRKPFK 89
R+ +K R+ + S + P K
Sbjct: 502 RKLAELRKMRKLELSGKGTPVK 523
Score = 32.8 bits (75), Expect = 0.38
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+++ + +K KK ++ E+ ++E + K + ++ +++ EK + E E E +
Sbjct: 411 EEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKV 470
Query: 61 ----EGRRRRRRRRRRRKKEREKKR 81
E R R RR R K+ EKK+
Sbjct: 471 RKDREIRARDRRIERLEKELEEKKK 495
Score = 32.0 bits (73), Expect = 0.60
Identities = 19/81 (23%), Positives = 44/81 (54%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
+K+ KK E+ E+ ++E + +++ ++ K++ E+ + E ++ E ++ + E R
Sbjct: 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARD 480
Query: 66 RRRRRRRRKKEREKKRSSRRK 86
RR R ++ E +KKR +
Sbjct: 481 RRIERLEKELEEKKKRVEELE 501
Score = 28.9 bits (65), Expect = 5.2
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+++ EK + + + ++E + K +K +E + + + ++ EK+ E+KKK EE E +
Sbjct: 449 KREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508
Query: 61 EGRRRRRRRRRRRKKEREK 79
+ R+ + K EK
Sbjct: 509 KMRKLELSGKGTPVKVVEK 527
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 34.2 bits (79), Expect = 0.033
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 10/55 (18%)
Query: 1 EKKKEKKKEKKKEKKKEKK------KKEKKKKE----KKKKKEKKKKEEKKKEKK 45
++++K+KEKKK+KKKE + +EKKK+E KK +E K++ EK KEK+
Sbjct: 74 AEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDKERVEKMKEKR 128
Score = 29.6 bits (67), Expect = 1.4
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 15/56 (26%)
Query: 9 EKKKEKKKEKKKKEKKKKEK----------KKKKE-----KKKKEEKKKEKKKKEE 49
+ +E+KKEK+KK+KKKKE KKK+E KK +E+K++ +K KE+
Sbjct: 72 KAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDKERVEKMKEK 127
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 34.7 bits (80), Expect = 0.033
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK------------KKKEKKKKEEKKKEKKKKE 48
+K+ +E+KK ++ K+K ++++ K K KK+ + E+
Sbjct: 50 DKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQLFSSEYEQTSSS 109
Query: 49 EEEGEEEEE 57
E EEE
Sbjct: 110 SESTSEEET 118
Score = 32.3 bits (74), Expect = 0.19
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
EKK + +++ E K+ +E+KK +K KE+ ++E+ K
Sbjct: 32 EKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKN 78
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 34.7 bits (80), Expect = 0.034
Identities = 16/76 (21%), Positives = 40/76 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E KK +K+ +K +K+ + K+ + + K + + K E + +K+K ++++E E+
Sbjct: 52 EFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAFNKKQQEYEK 111
Query: 61 EGRRRRRRRRRRRKKE 76
+ RR ++ ++
Sbjct: 112 DLNRREAEEEQKLLEK 127
Score = 34.7 bits (80), Expect = 0.040
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K + + K+++KE +K +K+ K K+ K + K E ++ K E E +E+
Sbjct: 43 KKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAF 102
Query: 61 --EGRRRRRRRRRRRKKEREK 79
+ + + RR +E +K
Sbjct: 103 NKKQQEYEKDLNRREAEEEQK 123
Score = 27.7 bits (62), Expect = 7.4
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKK-KKKEKKKKEEKKKEK---KKKEEEEGEEEEEGEEE 61
KK E + +K++KE +K +K+ K KE K +++ K E + K E E ++E+
Sbjct: 43 KKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAF 102
Query: 62 GR--RRRRRRRRRRKKEREKK 80
+ + + RR+ E E+K
Sbjct: 103 NKKQQEYEKDLNRREAEEEQK 123
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 35.1 bits (81), Expect = 0.036
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
E+K K+KE+ +++KE KK +K E KKK+
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 33.1 bits (76), Expect = 0.14
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E+K K+KE+ E++K+ +K +K + KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 32.0 bits (73), Expect = 0.33
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1 EKKKEKKKEK--KKEKKKEKKKKEKKKKEKKKKKEKKKK 37
E+K K+KE+ +E+K+ KK +K + KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Frk and
Srk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Frk, also known as Rak, is specifically
expressed in liver, lung, kidney, intestine, mammary
glands, and the islets of Langerhans. Rodent homologs
were previously referred to as GTK (gastrointestinal tyr
kinase), BSK (beta-cell Src-like kinase), or IYK
(intestinal tyr kinase). Studies in mice reveal that Frk
is not essential for viability. It plays a role in the
signaling that leads to cytokine-induced beta-cell death
in Type I diabetes. It also regulates beta-cell number
during embryogenesis and early in life.
Length = 261
Score = 35.5 bits (82), Expect = 0.036
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
K+ DFGLARV + D +A + APE + R +S DVWS G + E++
Sbjct: 143 KVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNR-FSIKSDVWSFGILLTEIV 198
>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C epsilon.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), epsilon isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta.
PKC-epsilon has been shown to behave as an oncoprotein.
Its overexpression contributes to neoplastic
transformation depending on the cell type. It
contributes to oncogenesis by inducing disordered cell
growth and inhibiting cell death. It also plays a role
in tumor invasion and metastasis. PKC-epsilon has also
been found to confer cardioprotection against ischemia
and reperfusion-mediated damage. Other cellular
functions include the regulation of gene expression,
cell adhesion, and cell motility.
Length = 321
Score = 35.6 bits (82), Expect = 0.037
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFG+ + E T T Y APEIL Y +VD W++G + E++ +
Sbjct: 136 KLADFGMCK-EGILNGVTTTTFCGTPDYIAPEILQ-ELEYGPSVDWWALGVLMYEMMAGQ 193
Query: 184 ILFQA 188
F+A
Sbjct: 194 PPFEA 198
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 34.9 bits (81), Expect = 0.037
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE-KKKKEEEEGEEEEEGEEEGRRRR 66
+K + E+ K E +++ KK ++EK++ E++ E + K E E EEEE + E +R
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHA 169
Score = 34.5 bits (80), Expect = 0.052
Identities = 17/59 (28%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKK---EKKKKEEKKKEKKKKEEEEGEEEEE 57
+K + ++ K E ++E KK E++K+E +K+ E K + +K+E+++++ EE +E
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
Score = 34.1 bits (79), Expect = 0.069
Identities = 15/53 (28%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKKEKKKKEEEE 51
E+ K + +++ K+ ++EK++ EK+ E + K E +K++EE+++ ++K+ +E
Sbjct: 119 EQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
Score = 29.9 bits (68), Expect = 1.7
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 20 KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREK 79
+ E+ K E +++ +K ++E+++ EK+ E E E E EE R+ +R + K
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLK 176
Query: 80 K 80
K
Sbjct: 177 K 177
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 35.8 bits (83), Expect = 0.037
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
E KE K ++ KKE++++E++KK K+ E ++ ++KE+ + E E + G
Sbjct: 325 EFLKEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLGV 383
Score = 28.1 bits (63), Expect = 8.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 44 KKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRS 82
K EE +EEEE E + + + R+K+R+
Sbjct: 331 SKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERN 369
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 33.5 bits (77), Expect = 0.037
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
K K EK+ +++ +++ K +EK+ K+EK+ E++++ + E EE+ R +
Sbjct: 24 KSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAA 83
Query: 70 RRRRKK-EREKKRSSRRKPFK 89
+ KK ER K+R R K K
Sbjct: 84 KMHAKKVERLKRREKRNKLLK 104
Score = 33.1 bits (76), Expect = 0.046
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKK-KEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
K K EK+ EK+ +++ K ++K+ K++K+ E +++ + KE +EE+E E+
Sbjct: 24 KSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAA 83
Query: 65 RRRRRRRRRKKEREKK 80
+ ++ R K REK+
Sbjct: 84 KMHAKKVERLKRREKR 99
Score = 33.1 bits (76), Expect = 0.049
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK+ EK+ E++ K +EK+ K++K+ E++++ + K+ KE+K E E+
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEK-------ERYEKMAA 83
Query: 61 EGRRRRRRRRRRRKK 75
+ ++ R +RR+K
Sbjct: 84 KMHAKKVERLKRREK 98
Score = 32.0 bits (73), Expect = 0.13
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKERE 78
+KK + K K EK+ ++ +++ K E+E ++E+E E + R + + RR K+E+E
Sbjct: 17 EKKAFRPKSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKE 76
Query: 79 K 79
+
Sbjct: 77 R 77
Score = 27.8 bits (62), Expect = 4.1
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE-----EGEEEEEGEEEGRR 64
K K K K ++K + + K +K+ +K+ E++ E E ++E E E +R
Sbjct: 1 VKASKGMRVNGKNWKTEKKAFRPKSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQR 60
Query: 65 RRRRRRRRRKKEREKKR 81
R + + RR + EK+R
Sbjct: 61 RIQAIKERRAAKEEKER 77
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 35.8 bits (83), Expect = 0.037
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK--KEEEEGEEEEEG 58
EK +K K K K ++K K ++ KK + KE + + +E E+ +
Sbjct: 449 EKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQEILEKVDS 508
Query: 59 EEE 61
+ E
Sbjct: 509 KSE 511
Score = 32.0 bits (73), Expect = 0.54
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
K+ +K K+K K K ++K K ++ KK +E
Sbjct: 445 KEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKE 491
Score = 30.4 bits (69), Expect = 1.8
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+K K+K K K +++ K +K K K + K+ E + + +E E+
Sbjct: 448 CEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIK--KNNDFIKEFETDALKLQEILEK 505
Score = 30.0 bits (68), Expect = 2.4
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+ K+ +K K+K K K ++K K +K KK +
Sbjct: 440 IELPFKEVCEKLLDKDKNKPFIKL-ILLSNNSQEKAVLKLLQKIKKNND 487
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 35.6 bits (82), Expect = 0.038
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGL + D M T Y APE+L Y AVD W +G + E++ R
Sbjct: 135 KITDFGLCKEGISDGAT-MKTFCGTPEYLAPEVL-EDNDYGRAVDWWGLGVVMYEMMCGR 192
Query: 184 ILFQAQ 189
+ F Q
Sbjct: 193 LPFYNQ 198
Score = 29.0 bits (65), Expect = 4.1
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 366 SLKYLHSARILHRDIKPGNLLVN 388
+L YLHS +++RD+K NL+++
Sbjct: 107 ALGYLHSCDVVYRDLKLENLMLD 129
>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed.
Length = 932
Score = 35.9 bits (83), Expect = 0.039
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 330 LTSVQQVKEEMHKFIAEQLNTSRVPLCINPQSAAFKSLKYLHSARILHRDIKPGNLLV 387
L SV Q KE + K +AE+ TS V ++ +++Y+HS +LHRD+KP N+L+
Sbjct: 93 LKSVWQ-KESLSKELAEK--TS-VGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILL 146
>gnl|CDD|222918 PHA02687, PHA02687, ORF061 late transcription factor VLTF-4;
Provisional.
Length = 231
Score = 35.0 bits (80), Expect = 0.040
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K K++ KKK + K EK K +K ++ K +E+E EE + EE G
Sbjct: 84 KTPKRRTKKKAKADKPEKSPKAVEKLCPPDDRDDKNEEKEPTEEAQRNEESG 135
Score = 31.5 bits (71), Expect = 0.54
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 7 KKEKKKEKKKEK-KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K K++ KKK K K EK K +K +++K +EK+ EE + EE E G
Sbjct: 84 KTPKRRTKKKAKADKPEKSPKAVEKLCPPDDRDDKNEEKEPTEEAQRNEESGDAEGG 140
Score = 30.7 bits (69), Expect = 1.00
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 3 KKEKKKEKKKEK--KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K K++ KKK K K EK K +K ++ K +E++ E+ ++ EE G+ E
Sbjct: 84 KTPKRRTKKKAKADKPEKSPKAVEKLCPPDDRDDKNEEKEPTEEAQRNEESGDAE 138
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 35.5 bits (82), Expect = 0.042
Identities = 31/111 (27%), Positives = 39/111 (35%), Gaps = 8/111 (7%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARH---YSAAVDVWSVGCIFAELL 180
K+ DFG + + V T Y +PE+L Y D WSVG E+L
Sbjct: 182 KLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 241
Query: 181 GRRILFQAQSPVQQLGLITD---LLGTPTPEEMRHACDGAKCHML--RQTR 226
F A S V I D L P E+ C L R+ R
Sbjct: 242 VGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVR 292
Score = 34.0 bits (78), Expect = 0.12
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+L +HS +HRD+KP N+L++ + LK
Sbjct: 154 ALDAIHSMGFIHRDVKPDNMLLDKSGHLK 182
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 34.1 bits (79), Expect = 0.043
Identities = 17/82 (20%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK---KEKKKKEEEEGEEEEE 57
K +K+ +KE KK + + +KK+KE +K+++K +K+ + +K K++E ++++E
Sbjct: 31 PAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQE 90
Query: 58 GEEEGRRRRRRRRRRRKKEREK 79
+++ + ++ ++++++ +
Sbjct: 91 LQQKQQAAQQELQQKQQELLQP 112
Score = 29.1 bits (66), Expect = 2.0
Identities = 16/84 (19%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
K +K+ +KE KK + + ++K+K+ +K++++ +K+ EE +++E +++ ++
Sbjct: 31 PAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQK-QQ 89
Query: 65 RRRRRRRRRKKEREKKRSSRRKPF 88
+++++ ++E ++K+ +P
Sbjct: 90 ELQQKQQAAQQELQQKQQELLQPI 113
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain.
This presumed domain is found at the N-terminus of
Ribosomal L30 proteins and has been termed RL30NT or
NUC018.
Length = 71
Score = 32.6 bits (75), Expect = 0.043
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK-KKEKKKKEEEE 51
KK K+ EK + K+ KK+ KK KKK+K K+ EK KE + E +E
Sbjct: 4 KKRKRNEKLRAKRA-KKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDE 52
Score = 31.4 bits (72), Expect = 0.11
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
++ ++ + ++ K++ +K ++KK+K K+ EK KE + E+
Sbjct: 7 KRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERD 51
Score = 31.4 bits (72), Expect = 0.11
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
KK K+ EK + K+ K K+ +K +K+K+K K+ EK KE E +E
Sbjct: 4 KKRKRNEKLRAKRAK-KRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDE 52
Score = 30.3 bits (69), Expect = 0.26
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
KK K+ EK + ++ KK KK +KKK + ++ +K +E E E +R +++
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKKK 62
Score = 27.6 bits (62), Expect = 2.2
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRR 73
K++K+ EK + ++ KK+ KK KKK K + E +E E R +R ++
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKK 61
Query: 74 K 74
K
Sbjct: 62 K 62
Score = 26.4 bits (59), Expect = 5.7
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
K++K+ +K + K+ K++ KK +KK K+K K+ E+ +E E + R +R
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKK--KRKLIFKRAEKYVKEYRAAERDEIRLKREA 59
Query: 70 RRR 72
+++
Sbjct: 60 KKK 62
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion
protein; Provisional.
Length = 196
Score = 34.5 bits (79), Expect = 0.044
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
K KE+ K K K K+ K + + K K K + +++E E +E
Sbjct: 144 KAKEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
Score = 31.4 bits (71), Expect = 0.53
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K KE+ K K K K+ + + E K + K E EE+EGE++
Sbjct: 144 KAKEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKD 195
Score = 30.7 bits (69), Expect = 0.92
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE---KKKKEEEEGEEEE 56
K KE+ K K K K+ K E + K K K EE+EGE++E
Sbjct: 144 KAKEEAKAAAKAAALA-KAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 35.8 bits (83), Expect = 0.044
Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK+ ++ +E++ + K++ K EK+ + KKE+ ++E ++ E + + ++
Sbjct: 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELE--AALRDLESRLGDLKK 889
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATR 97
E + R +K E + +K +LSE+ A
Sbjct: 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
Score = 34.7 bits (80), Expect = 0.10
Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 1 EKKKEKKKE-----KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
++KKEK E ++ ++ + EK+++ ++ ++E++K E + K+K E EG E
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYEL 228
Query: 56 EEGEEEGRRRRRR-RRRRRKKEREKKRSSRRKPFKLSEISA 95
+ +E R++ R+ E E ++ + +
Sbjct: 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE 269
Score = 33.1 bits (76), Expect = 0.30
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
EK+++ ++ ++++EK ++ + KEK++ E + K+K+ E +E E +
Sbjct: 194 DEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEEL 253
Query: 68 RRRRRRKKEREKKRSSRRKPFKLSEISA 95
+ E EK+ + L E++
Sbjct: 254 EKLTEEISELEKRLEEIEQ--LLEELNK 279
Score = 32.7 bits (75), Expect = 0.37
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK+++ ++ +++ +K E+ + K+K + + E K++E + +K+ E + EE E
Sbjct: 195 EKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE-EL 253
Query: 61 EGRRRRRRRRRRRKKEREKKRS 82
E +R +E E+
Sbjct: 254 EKLTEEISELEKRLEEIEQLLE 275
Score = 32.3 bits (74), Expect = 0.46
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
++ K E + +K + ++ +++ E+++K+ K EE + K++ E+ E EE +E
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
Query: 63 RRRRRRRRRRRKKE--REKKRSSRRKPFKLSE 92
R + R K E + + +R+ +L E
Sbjct: 382 ETRDELKDYREKLEKLKREINELKRELDRLQE 413
Score = 32.3 bits (74), Expect = 0.48
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+KE +++ +E ++++ +++ K +K+ E KKEE ++E ++ E + E +
Sbjct: 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
Query: 61 EGRRRRRRRRRRRKKEREK 79
+ R + R+ ER+
Sbjct: 887 LKKERDELEAQLRELERKI 905
Score = 32.0 bits (73), Expect = 0.71
Identities = 18/93 (19%), Positives = 38/93 (40%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ +++ + K E K+ E + +E ++ K ++ E + E + E +
Sbjct: 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK 802
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
R R R+ E++ R + K + EI
Sbjct: 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835
Score = 32.0 bits (73), Expect = 0.72
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 KKEK-KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++E+ K E+ + KEK++ E + K+K+ +++KE +++ EEE + EE E
Sbjct: 204 RREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISEL 263
Query: 62 GRRRRRRRRRRRKKEREKKR 81
+R + + ++ K
Sbjct: 264 EKRLEEIEQLLEELNKKIKD 283
Score = 31.2 bits (71), Expect = 1.0
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE-KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
E+K + +K+ +KE ++ ++++ + K++ K +K+ E KK++ EEE EE E
Sbjct: 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRK 86
+ R ++ R + + R RK
Sbjct: 878 RDLESRLGDLKKERDELEAQLRELERK 904
Score = 31.2 bits (71), Expect = 1.2
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK-----EEKKKEKKKKEEEEGEEE 55
+K + +E ++E ++E+K+++K +E + KE+ + EE KE + +E +
Sbjct: 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
Query: 56 EEGEEEGRRRRR-RRRRRRKKEREKKRSSRR 85
E+ E+ R +R R +E ++ S
Sbjct: 392 EKLEKLKREINELKRELDRLQEELQRLSEEL 422
Score = 30.8 bits (70), Expect = 1.5
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 1 EKKKEKKKE-----KKKEKKKEK-KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
E+ K +KE KKE+ +E+ ++ E ++ + + KKE + E + +E E E
Sbjct: 847 EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
Query: 55 EEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFK-LSEISATRPD 99
E E + E +R+R + + + E++ S P EI
Sbjct: 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS 952
Score = 30.8 bits (70), Expect = 1.5
Identities = 14/96 (14%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE-----EKKKEKKKKEEEEGEEEE 56
K +K EK K + E K++ + +E+ ++ ++ + + K + EEE E++
Sbjct: 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
++ + + K ++ + + ++ +
Sbjct: 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
Score = 30.4 bits (69), Expect = 1.8
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K + K+++ + ++ K ++E KE+ + EK+ K ++E E E + E
Sbjct: 444 EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
Query: 61 EGRRRRRR 68
E R R
Sbjct: 504 ERVRGGRA 511
Score = 30.4 bits (69), Expect = 1.8
Identities = 24/152 (15%), Positives = 61/152 (40%), Gaps = 9/152 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK--KKKEEKKKEKKKKEEEEGEEEEEG 58
E+++EK KE+ +E +++ E++ + K + ++ + EE +++ K EE + E
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQLVMYQ 118
+ + ++E + + L EI T++ + ++L +
Sbjct: 789 SHSRIPEIQAELSKLEEEVSRIEAR------LREIEQKLNRLTLEKEYLEKEIQELQEQR 842
Query: 119 ATYSSKICDFGLARVEEPDPNKAMTQEVVTQY 150
+I +E + K +E + +
Sbjct: 843 IDLKEQIKSIE-KEIENLNGKKEELEEELEEL 873
Score = 30.4 bits (69), Expect = 2.2
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKK----KEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+++K E+ E K+E + + +E K+ +++ K +K EK K+E E + E +
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRS 82
+E +R +
Sbjct: 410 RLQEELQRLSEELADLNAAIAGIEA 434
Score = 30.4 bits (69), Expect = 2.3
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + + + K +E + + +KK K+ E K K E ++E + E K E+EE EEE E
Sbjct: 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954
Query: 61 EGRRRRRRRRRR 72
+ + +R
Sbjct: 955 DVQAELQRVEEE 966
Score = 30.4 bits (69), Expect = 2.3
Identities = 21/77 (27%), Positives = 43/77 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ + + + ++ E+K E+ + + +KK K+ + K K E ++E + E+ +GE+EE EE
Sbjct: 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE 949
Query: 61 EGRRRRRRRRRRRKKER 77
E + +R +E
Sbjct: 950 ELSLEDVQAELQRVEEE 966
Score = 30.0 bits (68), Expect = 2.9
Identities = 14/82 (17%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE-EEGE 59
+ K E ++EK+ + + +K++ + ++ K E++ K+E + E+E + +
Sbjct: 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
Query: 60 EEGRRRRRRRRRRRKKEREKKR 81
E + R ++ R +
Sbjct: 490 RELAEAEAQARASEERVRGGRA 511
Score = 29.3 bits (66), Expect = 4.4
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE------- 53
E++ EK E+ E +K ++ E+ +E KK + +EE+ + K+K E E E
Sbjct: 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS 309
Query: 54 ---EEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
+E E E+ R + K E + R
Sbjct: 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELERE 344
Score = 28.9 bits (65), Expect = 5.4
Identities = 15/79 (18%), Positives = 34/79 (43%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E+ + K+E + + + + + ++ +K + +KE E+ E+EEE +E
Sbjct: 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE 740
Query: 65 RRRRRRRRRKKEREKKRSS 83
++E E +S
Sbjct: 741 ELEEDLSSLEQEIENVKSE 759
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and
activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD
and VEGFE. VEGFR2 signaling is implicated in all aspects
of normal and pathological vascular endothelial cell
biology. It induces a variety of cellular effects
including migration, survival, and proliferation. It is
critical in regulating embryonic vascular development
and angiogenesis. VEGFR2 is the major signal transducer
in pathological angiogenesis including cancer and
diabetic retinopathy, and is a target for inhibition in
cancer therapy.
Length = 343
Score = 35.4 bits (81), Expect = 0.045
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEV-VTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KICDFGLAR DP+ + + + APE + R Y+ DVWS G + E+
Sbjct: 219 KICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFD-RVYTIQSDVWSFGVLLWEIF 275
Score = 28.5 bits (63), Expect = 6.6
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 327 ERKLTSVQQVKEEMHKFIAEQLNTSRVPLCINPQSAAFKSLKYLHSARILHRDIKPGNLL 386
E+ L+ V++ + E + L + +C + Q A K +++L S + +HRD+ N+L
Sbjct: 155 EKSLSDVEEEEAEQEDLYKKVLTLEDL-ICYSFQVA--KGMEFLASRKCIHRDLAARNIL 211
Query: 387 VNSNCILK 394
++ N ++K
Sbjct: 212 LSENNVVK 219
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 33.0 bits (76), Expect = 0.047
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK 41
+++++KE K++ + K+KKK+K KKK++E
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 31.1 bits (71), Expect = 0.20
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE 38
+++++KE K++ + +KKKK K KKK +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGP 65
Score = 30.7 bits (70), Expect = 0.33
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK 35
E+++EK+ ++K ++ KK+KK+K KKK+ E
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 30.3 bits (69), Expect = 0.44
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
+++++KE K+K + KKK+K+K ++K+ E
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 29.9 bits (68), Expect = 0.55
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK 40
+++E+K+ K+K + KK+KK+K +KK+ E
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 29.9 bits (68), Expect = 0.60
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK 36
+++E+K+ K+K + K+KKK++ KKK+++
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 29.5 bits (67), Expect = 0.70
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
E+++EK+ K+K + K+KKK++ KKK +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGPAS 67
Score = 29.5 bits (67), Expect = 0.81
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
++++EK+ K+K + K++KK++ KKK +E G E
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGPASTAAE 71
Score = 28.8 bits (65), Expect = 1.3
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+++E+K+ K+K ++ KKKK++K K+++ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 28.4 bits (64), Expect = 2.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
E+++EK+ ++K E KKKKK K KK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEA 63
Score = 28.0 bits (63), Expect = 2.7
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
K+ +E+++KE K+K + KKK+++K +KK+ E
Sbjct: 26 KDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEA 63
Score = 27.6 bits (62), Expect = 4.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE 33
E+K+ K+K + +KKKK K KK++ +
Sbjct: 33 EEKELKQKADEGNNSGKKKKKRKAKKKRDEAGP 65
>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related
kinase adapter protein alpha. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) alpha
subfamily, pseudokinase domain. The STRAD alpha
subfamily is part of a larger superfamily that includes
the catalytic domains of serine/threonine kinases
(STKs), protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The pseudokinase domain shows
similarity to protein kinases but lacks crucial residues
for catalytic activity. STRAD forms a complex with the
scaffolding protein MO25, and the STK, LKB1, resulting
in the activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. The structure of STRAD-alpha is available and
shows that this protein binds ATP, has an ordered
activation loop, and adopts a closed conformation
typical of fully active protein kinases. It does not
possess activity due to nonconservative substitutions of
essential catalytic residues. ATP binding enhances the
affinity of STRAD for MO25. The conformation of
STRAD-alpha, stabilized through ATP and MO25, may be
needed to activate LKB1. A mutation which results in a
truncation of a C-terminal part of the human STRAD-alpha
pseudokinase domain and disrupts its association with
LKB1, leads to PMSE (polyhydramnios, megalencephaly,
symptomatic epilepsy) syndrome. Several splice variants
of STRAD-alpha exist which exhibit different effects on
the localization and activation of LKB1.
Length = 327
Score = 35.3 bits (81), Expect = 0.048
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 15/141 (10%)
Query: 153 APEILM-GARHYSAAVDVWSVGCIFAELLGRRILFQAQSPVQQL-----GLITDLLGTPT 206
+PE+L + Y A D++SVG EL + F+ Q L G + LL T T
Sbjct: 176 SPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTT 235
Query: 207 --PEEM-----RHACDGAKCHML--RQTRKSQSLSSLYSLSSQATGEAVHLLVQMLYFDP 257
EE+ R + R S SS + + + H + Q L +P
Sbjct: 236 IPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNP 295
Query: 258 TKRISVNSALCHPYLDEGRLR 278
R S ++ L H + + + R
Sbjct: 296 DARPSASTLLNHSFFKQIKRR 316
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 35.6 bits (82), Expect = 0.049
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNS 389
+L YLH I+HRD+KP N+L+++
Sbjct: 116 ALDYLHRHGIIHRDLKPDNMLISN 139
Score = 29.8 bits (67), Expect = 2.9
Identities = 36/128 (28%), Positives = 49/128 (38%), Gaps = 34/128 (26%)
Query: 148 TQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRRILFQAQSPVQ--QLGLITDLLGTP 205
T Y APE+L+G H AVD W++G E L F ++P Q Q L D+ P
Sbjct: 543 TPDYLAPELLLGKPH-GPAVDWWALGVCLFEFLTGIPPFNDETPQQVFQNILNRDI---P 598
Query: 206 TPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATGEAVHLLVQMLYFDPTKRISVNS 265
PE S+++Q A+ +L L DPTKR +
Sbjct: 599 WPEG----------------------EEKLSVNAQ---NAIEIL---LTMDPTKRAGLKE 630
Query: 266 ALCHPYLD 273
HP
Sbjct: 631 LKQHPLFH 638
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 34.6 bits (80), Expect = 0.050
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K +EK+KE+ K+K K K KE +KK K + KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 32.7 bits (75), Expect = 0.21
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 14 KKKEKKKKEKKKK--EKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
K E+K+KE+ +KK K K KE +KK K +
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAV 195
Score = 30.8 bits (70), Expect = 0.78
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 9 EKKKEKKKEKKKK--EKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
K +EK+KE+ +KK K +K KE +KK K K
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAV 195
Score = 29.6 bits (67), Expect = 1.9
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 5 EKKKEKKKEKKKE---KKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K +EK+KE+ KK K +K ++ +KK K + KK
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 29.2 bits (66), Expect = 2.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K E+K+KE+ KKK + +K K+ +++ + +
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKA 191
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 35.7 bits (82), Expect = 0.050
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE-KKKEKKKKEEEEGEEEEEGEEEG 62
KE++K +E + K ++K+ ++E K+ + KK K+ E +G EE EE G
Sbjct: 426 KEQRKAYLEEYDYRVKLLQKKQWREELKRMKMMKKFGKEIGELPDGYSEEVDEENG 481
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 33.5 bits (77), Expect = 0.052
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE 38
KK K K+K K +K EKK K + + EK++ EK + +
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 32.7 bits (75), Expect = 0.13
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+ K+ K KKK K +K +KK +++ + EK++ EK + K
Sbjct: 25 SRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 32.3 bits (74), Expect = 0.13
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+ KK K K+K K EK +K+ K++ +K++ +K + K E E+E
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKPVLPEDLEKE 74
>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G. This
model describes the vacuolar ATP synthase G subunit in
eukaryotes and includes members from diverse groups
e.g., fungi, plants, parasites etc. V-ATPases are
multi-subunit enzymes composed of two functional
domains: A transmembrane Vo domain and a peripheral
catalytic domain V1. The G subunit is one of the
subunits of the catalytic domain. V-ATPases are
responsible for the acidification of endosomes and
lysosomes, which are part of the central vacuolar
system [Energy metabolism, ATP-proton motive force
interconversion].
Length = 113
Score = 33.3 bits (76), Expect = 0.052
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
EK E +K K K+ K+ KE+ +K+ +K K++++KE K+ E + EE+ +
Sbjct: 20 EKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQA 79
Query: 69 RRRRRKKEREKKR 81
+ R KK +K +
Sbjct: 80 KIREIKKAVQKNK 92
Score = 27.1 bits (60), Expect = 8.0
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+ K+K K+ ++ KE+ +KE +K +++++KE K+ E K EE+ E E + +
Sbjct: 24 EARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQAK 80
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 35.0 bits (81), Expect = 0.053
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVV-TQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
KI DFG+ + E T T Y APEIL Y AVD W++G + E+L
Sbjct: 136 KIADFGMCK--EGILGGVTTSTFCGTPDYIAPEILSYQP-YGPAVDWWALGVLLYEMLAG 192
Query: 183 RILFQAQ 189
+ F+
Sbjct: 193 QSPFEGD 199
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
CCCH-type Zn-finger protein [General function
prediction only].
Length = 299
Score = 35.1 bits (80), Expect = 0.053
Identities = 16/74 (21%), Positives = 35/74 (47%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
KK KK+++ +K ++ +K+ + K K K K + ++ E +E E+
Sbjct: 2 PPKKMAKKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKE 61
Query: 64 RRRRRRRRRRKKER 77
+ R +RR +++
Sbjct: 62 KMRMEEKRREPEKQ 75
Score = 30.8 bits (69), Expect = 1.2
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE--KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
KK KK+++ +K +KE + K K K K + K+ + +E E++E
Sbjct: 3 PKKMAKKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEK 62
Query: 59 EEEGRRRRRRRRRR 72
+RR ++
Sbjct: 63 MRMEEKRREPEKQV 76
Score = 30.8 bits (69), Expect = 1.3
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 1 EKKKEKKKEKKKEKKKE--------KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
+K++E K+ ++ +KE K K K + K+ + +++ EKK+K E
Sbjct: 8 KKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEKMRMEE 67
Query: 53 EEEEEGEEEGR 63
+ E ++ R
Sbjct: 68 KRREPEKQVIR 78
Score = 28.9 bits (64), Expect = 4.9
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 2 KKKEKKKEKKKEKKKEKKK----KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+++ KK + +K+ + K K K + K + K+ + KE+ +K+E+ EE+
Sbjct: 10 QQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEKMRMEEKR 69
Query: 58 GEEEGRRRR 66
E E + R
Sbjct: 70 REPEKQVIR 78
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 2.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 2 (TAO2) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of
its activation loop serine. TAO2 functions as a
regulator of actin cytoskeletal and microtubule
organization. In addition, it regulates the transforming
growth factor-activated kinase 1 (TAK1), which is a
MAPKKK that plays an essential role in the signaling
pathways of tumor necrosis factor (TNF), interleukin 1
(IL-1), and Toll-like receptor (TLR).
Length = 308
Score = 35.0 bits (80), Expect = 0.053
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEIL--MGARHYSAAVDVWSVGCIFAELLG 181
K+ DFG A + P V T Y+ APE++ M Y VDVWS+G EL
Sbjct: 155 KLGDFGSASIMAP-----ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 209
Query: 182 RR 183
R+
Sbjct: 210 RK 211
Score = 33.9 bits (77), Expect = 0.14
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 362 AAFKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
A + L YLHS ++HRD+K GN+L++ ++K
Sbjct: 123 GALQGLAYLHSHNMIHRDVKAGNILLSEPGLVK 155
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 34.9 bits (80), Expect = 0.054
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQ--YYRAPEILMGARHYSAAVDVWSV 172
V+ ++ + KI DFGL + E D ++ + ++ APE L+ ++ Y A+ DVWS
Sbjct: 140 VLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIAS-DVWSF 198
Query: 173 GCIFAELL 180
G ELL
Sbjct: 199 GVTLYELL 206
>gnl|CDD|236485 PRK09368, PRK09368, gas vesicle synthesis-like protein; Reviewed.
Length = 140
Score = 33.9 bits (78), Expect = 0.054
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 39 EKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRR 73
E E + EEEE E R R+ RRRRR
Sbjct: 105 ETASEALGQGRGSDEEEERRRERPRPRKAPRRRRR 139
Score = 29.6 bits (67), Expect = 1.2
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKERE 78
E + + K E + +G +E EE R R R R+ R++ RE
Sbjct: 89 ESGARGKSKGALTGAAETASEALGQGRGSDEEEERRRERPRPRKAPRRRRRE 140
Score = 29.3 bits (66), Expect = 1.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREK 79
E G+ EEE RRR R R R+ + R +
Sbjct: 108 SEALGQGRGSDEEEERRRERPRPRKAPRRRRR 139
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 34.7 bits (80), Expect = 0.054
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K +++K+ + ++ KKKE+ + K+KK+ EE K +KK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 33.2 bits (76), Expect = 0.18
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK--KKEEEEG 52
E ++ KKKE+ + KKKKE ++ + +KK + +EK+ K EEG
Sbjct: 82 ASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTKLTEEG 135
Score = 33.2 bits (76), Expect = 0.20
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK-----KEKKKKEEEEGEEE 55
+ + EK+ + ++ KKKE+ + +KKK+ E+ K +KK KEK+ + +
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTKLT 132
Query: 56 EEG 58
EEG
Sbjct: 133 EEG 135
Score = 29.7 bits (67), Expect = 2.6
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ +++ E ++ KKK+E + K+KK+ +E K ++K + K+++ + + EE
Sbjct: 75 EDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTKLTEE 134
Query: 62 G 62
G
Sbjct: 135 G 135
>gnl|CDD|191022 pfam04538, BEX, Brain expressed X-linked like family. This is a
family of transcription elongation factors which
includes those referred to as Bex proteins as well as
those named TCEAL7. Bex1 was shown to be a novel link
between neurotrophin signalling, the cell cycle, and
neuronal differentiation, suggesting it might function
by coordinating internal cellular states with the
ability of cells to respond to external signals. TCEAL7
has been shown negatively to regulate the NF-kappaB
pathway, hence being important in ovarian cancer as it
one of the genes frequently downregulated in this
cancer. A closely related protein, TFIIS/TCEA, found in
pfam07500 is involved in transcription elongation and
transcript fidelity. TFIIS/TCEA promotes 3'
endoribonuclease activity of RNA polymerase II (pol II)
and allows pol II to bypass transcript pause or
'arrest' during elongation process. It is thus possible
that BEX is also acting in this way.
Length = 97
Score = 32.7 bits (75), Expect = 0.056
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 30 KKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKERE 78
+K K+ + + + E K++EE+ EE EG++ RRR RR RE
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRRRLRRSLPNFRE 50
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 35.4 bits (82), Expect = 0.056
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K KK K ++ ++EK KE+ K + + K ++E
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDE 54
Score = 34.2 bits (79), Expect = 0.13
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
KK K ++ +E+K K++ + K +K E +
Sbjct: 12 ALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQ 60
Score = 32.3 bits (74), Expect = 0.49
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 11 KKEKKKE-KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K KK K K+ +++K K++ + K + +K +E + +
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQ 60
Score = 32.3 bits (74), Expect = 0.51
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
K KK K K+ E++K K++ + K +K E + +
Sbjct: 10 KNALKKRLKA-KQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQ 60
Score = 31.1 bits (71), Expect = 1.0
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 20 KKEKKKKEKKKKKEKKK--KEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
K KK+ K K+ E++K KEE K + + ++ + R R K+
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKV 69
Query: 78 EKKRSSRRKPF 88
E R+ +P+
Sbjct: 70 EALRAKGVEPY 80
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 34.2 bits (79), Expect = 0.056
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKK----EEKK--------KEKKKKEEE----EG 52
EK K K K EK K+K KK KK K E K K E+ E
Sbjct: 71 EKPLPKPKPPTKWEKFAKKKGIKKRKKSKLVYDEATGEWVPRWGYKRANKDLEKDWIIEV 130
Query: 53 EEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
+ ++ +E+ ++RR ++ R + EK+
Sbjct: 131 KPNDDPKEDPFAKKRREKKERVAKNEKRE 159
Score = 30.3 bits (69), Expect = 1.1
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 3 KKEKKKEKKKE-----KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K K+ +K+ K + K++ K++++KKE+ K EK++ K KK
Sbjct: 115 YKRANKDLEKDWIIEVKPNDDPKEDPFAKKRREKKERVAKNEKRELKNKK 164
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
LATS subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. LATS was originally identified in Drosophila
using a screen for genes whose inactivation led to
overproliferation of cells. In tetrapods, there are two
LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in
mice results in the development of various tumors,
including sarcomas and ovarian cancer. LATS functions as
a tumor suppressor and is implicated in cell cycle
regulation.
Length = 376
Score = 35.2 bits (81), Expect = 0.057
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 146 VVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRRILFQAQSPVQ-QLGLI 198
V T Y APE+L+ Y+ D WSVG I E+L + F A +P + QL +I
Sbjct: 205 VGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVI 257
Score = 29.4 bits (66), Expect = 3.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 366 SLKYLHSARILHRDIKPGNLLVN 388
+++ +H +HRDIKP N+L++
Sbjct: 113 AIESVHKMGFIHRDIKPDNILID 135
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating
Factor-1 Receptor (CSF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
CSF-1R to its ligand, CSF-1, leads to receptor
dimerization, trans phosphorylation and activation, and
intracellular signaling. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. It leads
to increases in gene transcription and protein
translation, and induces cytoskeletal remodeling. CSF-1R
signaling leads to a variety of cellular responses
including survival, proliferation, and differentiation
of target cells. It plays an important role in innate
immunity, tissue development and function, and the
pathogenesis of some diseases including atherosclerosis
and cancer. CSF-1R signaling is also implicated in
mammary gland development during pregnancy and
lactation. Aberrant CSF-1/CSF-1R expression correlates
with tumor cell invasiveness, poor clinical prognosis,
and bone metastasis in breast cancer. Although the
structure of the human CSF-1R catalytic domain is known,
it is excluded from this specific alignment model
because it contains a deletion in its sequence.
Length = 374
Score = 35.2 bits (81), Expect = 0.057
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 123 SKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARH-----YSAAVDVWSVGCIFA 177
+KICDFGLAR D N VV R P M Y+ DVWS G +
Sbjct: 251 AKICDFGLARDIMNDSNY-----VVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLW 305
Query: 178 EL--LGR 182
E+ LG+
Sbjct: 306 EIFSLGK 312
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs),
MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK1 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients. MEK1 also plays a role in cell
cycle control.
Length = 333
Score = 35.0 bits (80), Expect = 0.063
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 362 AAFKSLKYLHSA-RILHRDIKPGNLLVNS 389
A K L YL +I+HRD+KP N+LVNS
Sbjct: 111 AVIKGLTYLREKHKIMHRDVKPSNILVNS 139
Score = 34.6 bits (79), Expect = 0.082
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL-LGR 182
K+CDFG V + V T+ Y +PE L G HYS D+WS+G E+ +GR
Sbjct: 144 KLCDFG---VSGQLIDSMANSFVGTRSYMSPERLQGT-HYSVQSDIWSMGLSLVEMAIGR 199
>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 1.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
Inactivation of LATS1 in mice results in the development
of various tumors, including sarcomas and ovarian
cancer. Promoter methylation, loss of heterozygosity,
and missense mutations targeting the LATS1 gene have
also been found in human sarcomas and ovarian cancers.
In addition, decreased expression of LATS1 is associated
with an aggressive phenotype and poor prognosis. LATS1
induces G2 arrest and promotes cytokinesis. It may be a
component of the mitotic exit network in higher
eukaryotes.
Length = 382
Score = 35.0 bits (80), Expect = 0.066
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 146 VVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRRILFQAQSPVQ 193
V T Y APE+L+ Y+ D WSVG I E+L + F AQ+P++
Sbjct: 209 VGTPNYIAPEVLLRT-GYTQLCDWWSVGVILYEMLVGQPPFLAQTPLE 255
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 34.7 bits (80), Expect = 0.068
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQ--YYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
KI DFGL +V D +E ++ APE L ++ +S A DVWS G + EL
Sbjct: 148 KIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESK-FSVASDVWSFGVVLYEL 204
Score = 28.2 bits (63), Expect = 7.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
K ++YL S R +HRD+ N+LV S +K
Sbjct: 119 KGMEYLGSKRYVHRDLATRNILVESENRVK 148
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 35.2 bits (81), Expect = 0.069
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
K +KK K K+K K K K +KK K + KK +K+
Sbjct: 743 PKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 34.8 bits (80), Expect = 0.079
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
EKK + KKK K K K KKK + K K+ KK
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKK 782
Score = 34.4 bits (79), Expect = 0.12
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K +KK K K+K K K K KK+ K K +K +K+
Sbjct: 743 PKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 32.9 bits (75), Expect = 0.37
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+K+ K +KK K K K K+K K + KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 32.5 bits (74), Expect = 0.50
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K +KK K KK+ + K K KKK + K +K K
Sbjct: 743 PKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTK 781
Score = 31.3 bits (71), Expect = 1.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+KK K KK+ K K K KKK K K +
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSK 777
Score = 30.2 bits (68), Expect = 2.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K EKK K KKK K K K +KK K + +
Sbjct: 743 PKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSK 777
Score = 28.6 bits (64), Expect = 6.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
+KK K KKK K + K KKK + + +
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSK 777
>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 3. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 3 (FGFR3); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR3 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Many FGFR3 splice
variants have been reported with the IIIb and IIIc
isoforms being the predominant forms. FGFR3 IIIc is the
isoform expressed in chondrocytes, the cells affected in
dwarfism, while IIIb is expressed in epithelial cells.
FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and
FGF23. It is a negative regulator of long bone growth.
In the cochlear duct and in the lens, FGFR3 is involved
in differentiation while it appears to have a role in
cell proliferation in epithelial cells. Germline
mutations in FGFR3 are associated with skeletal
disorders including several forms of dwarfism. Some
missense mutations are associated with multiple myeloma
and carcinomas of the bladder and cervix. Overexpression
of FGFR3 is found in thyroid carcinoma.
Length = 334
Score = 34.6 bits (79), Expect = 0.072
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFGLAR V D K T + + APE L R Y+ DVWS G + E+
Sbjct: 174 KIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFD-RVYTHQSDVWSFGVLLWEIF 230
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 33.3 bits (76), Expect = 0.072
Identities = 20/78 (25%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK-----------KKKEEEEG 52
KE + ++ ++++++ +E ++ ++++K K +K E+++E KKKEE+E
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEEDEE 82
Query: 53 EEEEEGEEEGRRRRRRRR 70
E + EEE R R+++
Sbjct: 83 EPQAAAEEEEGRLGRKKK 100
Score = 30.6 bits (69), Expect = 0.62
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 39 EKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKL 90
++ + + EEE EE +E E R+ + R+ ++ERE R R + +
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGI 74
Score = 28.3 bits (63), Expect = 4.2
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRR 71
K+ K KE + E ++E ++ +E +E +++ + + + EE E R+ R +
Sbjct: 14 KDVKGMLGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYG 73
Query: 72 RRKKEREK 79
+KKE ++
Sbjct: 74 IKKKEEDE 81
Score = 27.5 bits (61), Expect = 7.7
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
K K+ E + + ++++++ ++ ++ EE++K K +K EEE E +G
Sbjct: 17 KGMLGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQG 67
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 34.9 bits (79), Expect = 0.074
Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRK 74
KK + + KK+ E + + K E ++E++K E+E+ + E+EG E + + + ++K
Sbjct: 126 KKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQK 185
Query: 75 KEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQ 113
E+EK+++ + K + S + I+ Q +Q T
Sbjct: 186 TEQEKQKTEQEK----QKTSNIANKNAIELEQEKQKTEN 220
Score = 31.8 bits (71), Expect = 0.73
Identities = 17/78 (21%), Positives = 48/78 (61%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++K +++++K EK+ + + K E++K+K +++K++ ++EK+K + E E+
Sbjct: 154 EEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQ 213
Query: 61 EGRRRRRRRRRRRKKERE 78
E ++ ++ K++++
Sbjct: 214 EKQKTENEKQDLIKEQKD 231
Score = 31.4 bits (70), Expect = 0.82
Identities = 18/80 (22%), Positives = 46/80 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K +++K++ +KE + + K ++EK+K +++K+K E++K+K + E E E+
Sbjct: 156 QKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEK 215
Query: 61 EGRRRRRRRRRRRKKEREKK 80
+ ++ + +K+ K+
Sbjct: 216 QKTENEKQDLIKEQKDFIKE 235
Score = 31.4 bits (70), Expect = 0.85
Identities = 16/78 (20%), Positives = 46/78 (58%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
E++++K +++K+K +K+ + + K ++EK+K +++K++ E E+++ +
Sbjct: 152 EQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIEL 211
Query: 69 RRRRRKKEREKKRSSRRK 86
+ ++K E EK+ + +
Sbjct: 212 EQEKQKTENEKQDLIKEQ 229
Score = 29.5 bits (65), Expect = 3.0
Identities = 14/79 (17%), Positives = 48/79 (60%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+++E+K E++K+K +++ + + K +++++K ++EK+K +++K++ + E
Sbjct: 152 EQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIEL 211
Query: 62 GRRRRRRRRRRRKKEREKK 80
+ +++ ++ +E+K
Sbjct: 212 EQEKQKTENEKQDLIKEQK 230
Score = 28.7 bits (63), Expect = 6.4
Identities = 15/76 (19%), Positives = 41/76 (53%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + KK+ + + K E +++E+K ++EK+K E++ E + + +E+++ E+
Sbjct: 129 ELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQ 188
Query: 61 EGRRRRRRRRRRRKKE 76
E ++ + +++
Sbjct: 189 EKQKTEQEKQKTSNIA 204
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 34.7 bits (80), Expect = 0.075
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+E E+K ++K+KKKE+ K +E+K+E + E+ E EE +E+G
Sbjct: 337 PNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEKG 390
Score = 33.6 bits (77), Expect = 0.20
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
++ ++K ++KEKKK+E K K+EK++ E +K K+ EE
Sbjct: 337 PNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEE 385
Score = 32.8 bits (75), Expect = 0.36
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
+E E+K + ++K++KK++ K K+++++ E +K+ K+ EE
Sbjct: 337 PNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEE 385
Score = 28.6 bits (64), Expect = 6.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+ ++ E+K +++EKKKE+ K +EE+ E+ E +
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEK 377
>gnl|CDD|227708 COG5421, COG5421, Transposase [DNA replication, recombination, and
repair].
Length = 480
Score = 34.7 bits (80), Expect = 0.076
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KK+E+ + EK+ EK +K +K + ++ +K ++ K E + + +
Sbjct: 280 KKEEQTLRTRIEKELEKAEKSLEKLKGREFNCEKDARIAAEKILKDYSSVEFLEVDFKSK 339
Query: 62 GRRRRRRRRRRRKKEREKKR 81
+R +R R RK E K
Sbjct: 340 KKREEAKRGRPRKDEELKTY 359
Score = 30.5 bits (69), Expect = 1.8
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK----------KKEKKKKEEEEGEEE 55
+KKE++ + + +K+ EK +K +K K ++ EK K + E +
Sbjct: 279 QKKEEQTLRTRIEKELEKAEKSLEKLKGREFNCEKDARIAAEKILKDYSSVEFLEVDFKS 338
Query: 56 EEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
++ EE +R R R+ K ++ + P ++ +
Sbjct: 339 KKKREEAKRGRPRKDEELKTYYRINKNIKVSPEQILKY 376
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 34.2 bits (78), Expect = 0.081
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
KI DFGLAR+ E + A + APE + R ++ DVWS G + EL+ +
Sbjct: 142 KIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR-FTIKSDVWSFGILLTELVTK 199
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines.
FAK is important in mediating signaling initiated at
sites of cell adhesions and at growth factor receptors.
Through diverse molecular interactions, FAK functions as
a biosensor or integrator to control cell motility. It
is a key regulator of cell survival, proliferation,
migration and invasion, and thus plays an important role
in the development and progression of cancer. Src binds
to autophosphorylated FAK forming the FAK-Src dual
kinase complex, which is activated in a wide variety of
tumor cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for
cancer therapy.
Length = 270
Score = 34.3 bits (79), Expect = 0.082
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSN-CI 392
+L YL S R +HRDI N+LV+S C+
Sbjct: 118 TALAYLESKRFVHRDIAARNVLVSSPDCV 146
Score = 27.8 bits (62), Expect = 9.2
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
K+ DFGL+R +E+ KA ++ ++ APE + R +++A DVW G E+L
Sbjct: 147 KLGDFGLSRYLEDESYYKASKGKLPIKWM-APESI-NFRRFTSASDVWMFGVCMWEIL 202
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 34.6 bits (80), Expect = 0.084
Identities = 13/48 (27%), Positives = 18/48 (37%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
E ++ K KK K K ++ KK KK KK +K
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Tyrosine kinase expressed in hepatocellular carcinoma
(Tec) subfamily; catalytic (c) domain. The Tec subfamily
is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec kinases are
cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike
Src kinases, most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a
variety of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows
a distinct cell-type pattern of expression. The function
of Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency,
X-linked agammaglobulinaemia (XLA).
Length = 256
Score = 34.3 bits (79), Expect = 0.085
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
++++YL S +HRD+ N LV + ++K
Sbjct: 111 EAMEYLESNGFIHRDLAARNCLVGEDNVVK 140
Score = 32.8 bits (75), Expect = 0.24
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
K+ DFGLAR D + + PE+ +R +S+ DVWS G + E+
Sbjct: 140 KVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSR-FSSKSDVWSFGVLMWEV 194
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 6. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK6
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues.
t is expressed as multiple splice variants with
different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK6 plays important roles in the regulation
of dopamine, M3 muscarinic, opioid, and chemokine
receptor signaling. It also plays maladaptive roles in
addiction and Parkinson's disease. GRK6-deficient mice
exhibit altered dopamine receptor regulation, decreased
lymphocyte chemotaxis, and increased acute inflammation
and neutrophil chemotaxis.
Length = 285
Score = 34.2 bits (78), Expect = 0.085
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
+I D GLA V P+ + + V T Y APE++ R Y+ + D W++GC+ E++
Sbjct: 142 RISDLGLA-VHVPE-GQTIKGRVGTVGYMAPEVVKNER-YTFSPDWWALGCLLYEMI--- 195
Query: 184 ILFQAQSPVQQ 194
QSP QQ
Sbjct: 196 ---AGQSPFQQ 203
Score = 28.1 bits (62), Expect = 8.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSN 390
L+ LH RI++RD+KP N+L++ +
Sbjct: 115 LEDLHQERIVYRDLKPENILLDDH 138
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 2.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2
(MEKK2) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 34.2 bits (78), Expect = 0.085
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 115 VMYQATYSSKICDFGLARVEEPD--PNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSV 172
++ + + K+ DFG ++ + M T Y+ +PE++ G Y D+WSV
Sbjct: 137 ILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISG-EGYGRKADIWSV 195
Query: 173 GCIFAELLGRR 183
GC E+L +
Sbjct: 196 GCTVVEMLTEK 206
Score = 30.0 bits (67), Expect = 1.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNS 389
+ + YLHS I+HRDIK N+L +S
Sbjct: 116 LEGVSYLHSNMIVHRDIKGANILRDS 141
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 34.7 bits (80), Expect = 0.089
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRK 74
++E +++E+K EK + + +E K+ KE +GEE E G EE R +
Sbjct: 247 EEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEE---------RFKA 297
Query: 75 KE----REKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQLVMYQATYSS 123
E E S + K+ E + + + Y S
Sbjct: 298 PEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQS 350
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 34.4 bits (79), Expect = 0.089
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K E + EK KE + EK+ E K+ +K+ + + +KK+E + EE + E E
Sbjct: 101 KLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEK 160
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
+ R K E + ++ FK +E
Sbjct: 161 KLEESLELEREKFEEQLHEANLDLEFKENE 190
Score = 32.9 bits (75), Expect = 0.32
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + EK KE + +K+ ++ KE +K+ + + +KK + K EE + E E +
Sbjct: 103 EALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKL 162
Query: 61 E 61
E
Sbjct: 163 E 163
Score = 32.5 bits (74), Expect = 0.39
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK+ ++ ++ +++ + + +KK+E K +E+ K E +KK ++ E E + EE+ E
Sbjct: 120 EKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHE 179
Score = 31.3 bits (71), Expect = 0.88
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+K+K+ E +++ E K+ +K+ + + +KK+E K E++ K E E + EE
Sbjct: 110 LEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEE 164
Score = 30.9 bits (70), Expect = 1.1
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE--KKKKEEKKKEKKKKEEEEGEEEEEG 58
++ ++ + +++ + + E EK K+ E +K+ +E KE +K+ + E E+
Sbjct: 85 NEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKK 144
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E + R + KK E R K
Sbjct: 145 RENNKNEERLKFENEKKLEESLELEREK 172
Score = 30.6 bits (69), Expect = 1.6
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + +K+ + K+ +K+ + + +KK++ K +E K E +KK EE E E E E
Sbjct: 115 ELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFE 174
Query: 61 E 61
E
Sbjct: 175 E 175
Score = 28.6 bits (64), Expect = 6.0
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KKKE + +++ ++K++K ++ K+ + + E K E + E ++E E E+
Sbjct: 62 KKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEK 121
Score = 28.6 bits (64), Expect = 6.7
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE---KKKKEEKKKEKKKKEEEEGEEEEEG 58
+ E++ +K+++K ++ K+ E + E + E EK K+ E +E +E
Sbjct: 67 SQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDEL 126
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
+E +++ + +K+RE ++ R F+
Sbjct: 127 SKELQKQLQNTAEIIEKKRENNKNEERLKFE 157
>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd
subfamily; Phd is a cytosolic regulator of G protein
functions. It specifically binds G protein betagamma
(Gbg)-subunits with high affinity, resulting in the
solubilization of Gbg from the plasma membrane. This
impedes the formation of a functional G protein trimer
(G protein alphabetagamma), thereby inhibiting G
protein-mediated signal transduction. Phd also inhibits
the GTPase activity of G protein alpha. Phd can be
phosphorylated by protein kinase A and G
protein-coupled receptor kinase 2, leading to its
inactivation. Phd was originally isolated from the
retina, where it is highly expressed and has been
implicated to play an important role in light
adaptation. It is also found in the pineal gland,
liver, spleen, striated muscle and the brain. The
C-terminal domain of Phd adopts a thioredoxin fold, but
it does not contain a CXXC motif. Phd interacts with G
protein beta mostly through the N-terminal helical
domain.
Length = 175
Score = 33.4 bits (77), Expect = 0.089
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 46 KKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISA 95
K+ +E +E+++ +E+ ++ R +R +E K R+ K+ E+ +
Sbjct: 20 KQLKESEQEDDDDDEDKEEFLQQYREQRMQEMHAKLPFGRRFGKVYELDS 69
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 34.6 bits (80), Expect = 0.090
Identities = 14/60 (23%), Positives = 35/60 (58%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K +E+++ ++ K+K ++ K ++E + E K+ +K+ + + E E+ E ++ EE+
Sbjct: 183 KAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEK 242
Score = 33.8 bits (78), Expect = 0.17
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E K E+++E ++ K+K ++ K +++ + E K+ +K+ E E E+E
Sbjct: 181 ELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKE 233
Score = 31.9 bits (73), Expect = 0.53
Identities = 14/64 (21%), Positives = 36/64 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+++ ++ K+K ++ K +E+ + K+ +K+ + + +++KEE + EE+ +
Sbjct: 186 EEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQ 245
Query: 61 EGRR 64
E R
Sbjct: 246 ELER 249
Score = 31.5 bits (72), Expect = 0.73
Identities = 17/58 (29%), Positives = 35/58 (60%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KEK++E + ++E + + K+ +K+ + + E +K+E +KK EE+ +E E + E
Sbjct: 195 KEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAE 252
Score = 31.2 bits (71), Expect = 1.1
Identities = 14/57 (24%), Positives = 34/57 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
EK++E + ++E + KE +++ + + +++KEE +K+ ++K +E E + E
Sbjct: 196 EKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAE 252
Score = 30.4 bits (69), Expect = 1.6
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E K E+++E ++ K+K+E+ K +++ + + K+ E++ E E E+E
Sbjct: 181 ELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKE 233
Score = 30.4 bits (69), Expect = 1.8
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRR 72
KK + K E++++ ++ KEK+++ K E++ E +E ++ R +
Sbjct: 176 SKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEEL 235
Query: 73 RKKEREKKRS 82
RKK EK R
Sbjct: 236 RKKYEEKLRQ 245
Score = 30.0 bits (68), Expect = 2.2
Identities = 22/97 (22%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE--EEEG 58
K +E+ + + K+ +K+ + + E++K++ +KK EEK +++ +++ E E+ + E
Sbjct: 203 SKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNEL 262
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISA 95
+ +R + K++ E++R+ R KL+E+++
Sbjct: 263 ALQAIELQREFNKEIKEKVEEERNGRLA--KLAELNS 297
Score = 30.0 bits (68), Expect = 2.4
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE---KKKKEEKKKEKKKKEEEEGEEEE 56
++K+E+ K +E+ + + ++ EK+ + E +K++ KK E+K ++E E + E
Sbjct: 195 KEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEA 253
Score = 29.2 bits (66), Expect = 4.5
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + E KE+ + KK + K +E+++ E KEK+++ + EEE
Sbjct: 154 EDNLKDDLESLIASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARL 213
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
E + ++ R + EREK+
Sbjct: 214 ESKEAALEKQLRLEFEREKEE 234
>gnl|CDD|169428 PRK08404, PRK08404, V-type ATP synthase subunit H; Validated.
Length = 103
Score = 32.5 bits (74), Expect = 0.091
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE--EGEEEGRR 64
K EK+ E++ EK K+E KK +K K+E KK EE+ +K ++E ++ E++ EGEEE ++
Sbjct: 10 KAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKK 69
Score = 30.9 bits (70), Expect = 0.30
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 9/68 (13%)
Query: 3 KKEKKKEKKKEKKKEKKKK--EKKKKEKKKKKEK--KKKEEKKKEKKKKEEEEGEEE--- 55
K EK+ E++ EK KE+ KK K K+E KK +E+ KK EE+ ++ +K+++EGEEE
Sbjct: 10 KAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKK 69
Query: 56 --EEGEEE 61
EEGE+E
Sbjct: 70 ILEEGEKE 77
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 33.9 bits (78), Expect = 0.094
Identities = 19/85 (22%), Positives = 45/85 (52%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
++E + + +K +K+KKK +KK+K K+ +++K+ E++ ++ E+ E R
Sbjct: 150 LDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQRE 209
Query: 65 RRRRRRRRRKKEREKKRSSRRKPFK 89
++ + ++KK + K +K
Sbjct: 210 LMKKGKGKKKKIVKDKDGKVVYKWK 234
Score = 32.7 bits (75), Expect = 0.21
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++++ + + + EK +K+KKK KKK+K K+ +E+K+ +KK ++ E E
Sbjct: 151 DRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLEL---- 206
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
+R ++ + KK++ K + +K
Sbjct: 207 ---QRELMKKGKGKKKKIVKDKDGKVVYK 232
Score = 31.2 bits (71), Expect = 0.80
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
+++KE++K+ KK +++ + ++E KK K KKK+ K ++ K K K+E
Sbjct: 188 KERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKE 236
Score = 29.6 bits (67), Expect = 2.3
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + + +K EK+KK+ KK++K KE K+++E++K K KK E+ E + E +
Sbjct: 154 ENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREK-KLKKVEQRLELQRELMK 212
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
+G+ ++++ + + + K RK
Sbjct: 213 KGKGKKKKIVKDKDGKVVYKWKKERK 238
Score = 28.5 bits (64), Expect = 5.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK 36
E ++E K+ K +KKK K K K K KKE+K+
Sbjct: 205 ELQRELMKKGKGKKKKIVKDK-DGKVVYKWKKERKR 239
Score = 28.1 bits (63), Expect = 6.6
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKK-KKEKKKKKEKKKKEEKKK 42
KK E++ E ++E K+ K K+KK K+K K K K+E+K+
Sbjct: 198 KKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C.
Serine/Threonine Kinases (STKs), Classical (or
Conventional) Protein Kinase C (cPKC) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI,
betaII, and gamma. cPKCs are potent kinases for
histones, myelin basic protein, and protamine. PKC-gamma
is mainly expressed in neuronal tissues. It plays a role
in protection from ischemia.
Length = 324
Score = 34.4 bits (79), Expect = 0.094
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
VM A KI DFG+ + E K T Y APEI+ + Y +VD W+ G
Sbjct: 132 VMLDAEGHIKIADFGMCK-ENIFGGKTTRTFCGTPDYIAPEIIA-YQPYGKSVDWWAFGV 189
Query: 175 IFAELL 180
+ E+L
Sbjct: 190 LLYEML 195
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 33.5 bits (77), Expect = 0.095
Identities = 21/80 (26%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
KE+K E+ ++ +E +K E+++ +E++ +EE + E++++E E E + E ++ R
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLR 61
Query: 66 RRRR----RRRRKKEREKKR 81
+ R+R ++ERE+ +
Sbjct: 62 AQAEFENLRKRTEREREEAK 81
>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related
(NDR) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The NDR subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. NDR kinases
regulate mitosis, cell growth, embryonic development,
and neurological processes. They are also required for
proper centrosome duplication. Higher eukaryotes contain
two NDR isoforms, NDR1 and NDR2. This subfamily also
contains fungal NDR-like kinases.
Length = 364
Score = 34.3 bits (79), Expect = 0.099
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 146 VVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
V T Y APE+ + Y+ D WS+G I E+L
Sbjct: 200 VGTPDYIAPEVFL-QTGYNKECDWWSLGVIMYEML 233
Score = 30.4 bits (69), Expect = 1.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 370 LHSARILHRDIKPGNLLVNSN 390
+H +HRDIKP NLL+++
Sbjct: 117 IHKLGYIHRDIKPDNLLLDAK 137
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 34.2 bits (78), Expect = 0.099
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGL + E M T Y APE+L Y AVD W +G + E++ R
Sbjct: 135 KITDFGLCK-EGISDGATMKTFCGTPEYLAPEVLED-NDYGRAVDWWGLGVVMYEMMCGR 192
Query: 184 ILFQAQ 189
+ F Q
Sbjct: 193 LPFYNQ 198
Score = 28.4 bits (63), Expect = 7.3
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+L+YLHS +++RDIK NL+++ + +K
Sbjct: 107 ALEYLHSRDVVYRDIKLENLMLDKDGHIK 135
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel
repeat in Pneumocystis carinii Major surface
glycoprotein (MSG) some members of the alignment have
up to nine repeats of this family, the repeats
containing several conserved cysteines. The MSG of P.
carinii is an important protein in host-pathogen
interactions. Surface glycoprotein A from Pneumocystis
carinii is a main target for the host immune system,
this protein is implicated in the attachment of
Pneumocystis carinii to the host alveolar epithelial
cells, alveolar macrophages, host surfactant and
possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 31.6 bits (72), Expect = 0.10
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K+K +K ++K K KK+ K +E K+ K + ++KKK KK +E+ + ++E E
Sbjct: 24 PLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
Score = 30.9 bits (70), Expect = 0.24
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
+K EK KEK + KK+ K +E KE K + +KKKK +K ++K + ++ E
Sbjct: 28 EKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
Score = 29.3 bits (66), Expect = 0.67
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
K+K +K ++K K K+ K E+ ++ K + KKKK+ KK K+K + + E E
Sbjct: 26 LKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
Score = 28.9 bits (65), Expect = 1.1
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E+ KEK ++ K+K K K+ K +E KE K + KKKK+ ++
Sbjct: 20 EEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKK 66
Score = 26.2 bits (58), Expect = 8.1
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++K K+ E+ E +E K+K EK K+K K K++ K E+ +E +GE +++ + +
Sbjct: 6 EEKCKELEEYCEFLEEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCK 65
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 34.7 bits (79), Expect = 0.10
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
EK E + +K ++ K KKK ++ + +K+ +KK EEE +E G E+
Sbjct: 621 VVFEKPLEATENFNPWLDRKMRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEK 680
Query: 62 GR 63
R
Sbjct: 681 KR 682
Score = 30.8 bits (69), Expect = 1.7
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
KK+ + +++K+ +KK E++ ++ +KK+ + KE E ++E+
Sbjct: 648 KKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGGVPDILLKEIEVEDDEK 701
Score = 29.3 bits (65), Expect = 4.3
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++++ K+KE +K ++ +KK+ E +K E +
Sbjct: 581 EQRRKLAPRKRKEDFVTPSTSLEKSMDRILHGQKKRAEGAVV-FEKPLEATENFNPWLDR 639
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKP 87
+ RR +R +++ ++ R KR ++ P
Sbjct: 640 KMRRIKRIKKKAYRRIRRDKRLKKKMP 666
Score = 29.3 bits (65), Expect = 4.6
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 2 KKKEKKKEKKKEKKKEK--KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
K + K+ KKK ++ + K+ +KK E++ +E EKK+ + E E E +
Sbjct: 640 KMRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGGVPDILLKEIEVEDD 699
Query: 60 EE 61
E+
Sbjct: 700 EK 701
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 33.3 bits (77), Expect = 0.10
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+ E + + + K + KKEK + + + K+ E K ++ + E +
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
Score = 29.9 bits (68), Expect = 1.3
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK 34
+ K + K++K + E K+ E K KE + + +
Sbjct: 73 QAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
Score = 29.1 bits (66), Expect = 2.6
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKK--EKKKKEEEEGEEE 55
E + + E + K + KKEK + + K E K KE E +
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
Score = 28.7 bits (65), Expect = 3.1
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKE-EEEGEEEEEGEEE 61
+ E + K + KKE+ + + KE E + +E E +
Sbjct: 65 AAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
Score = 27.9 bits (63), Expect = 5.4
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + + K + KK+K + E K+ E + E E E +
Sbjct: 65 AAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 33.9 bits (78), Expect = 0.10
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK 40
K E K + K + K K KK E++ K+E K E +
Sbjct: 92 IPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 32.7 bits (75), Expect = 0.24
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
E KE K + K K K + K K KK +E+ K+E K E +
Sbjct: 83 EPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 30.8 bits (70), Expect = 1.2
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK--KKKEEKKKEKKKKEEE 50
E + E E KE K E K K K K K K KK EE+ K + K E
Sbjct: 75 EPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEP 126
>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
PBS2-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Polymyxin B
resistance protein 2 (PBS2) from Saccharomyces
cerevisiae, Wis1 from Schizosaccharomyces pombe, and
related proteins. PBS2 and Wis1 are components of
stress-activated MAPK cascades in budding and fission
yeast, respectively. PBS2 is the specific activator of
the MAPK Hog1, which plays a central role in the
response of budding yeast to stress including exposure
to arsenite and hyperosmotic environments. Wis1
phosphorylates and activates the MAPK Sty1 (also called
Spc1 or Phh1), which stimulates a transcriptional
response to a wide range of cellular insults through the
bZip transcription factors Atf1, Pcr1, and Pap1.
Length = 286
Score = 34.1 bits (78), Expect = 0.10
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
K LK H+ I+HRD+KP N+LVN N +K
Sbjct: 116 KFLKEEHN--IIHRDVKPTNVLVNGNGQVK 143
Score = 33.3 bits (76), Expect = 0.17
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 109 QPTRQLVMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEIL-----MGARHY 163
+PT LV K+CDFG++ K + Q Y APE + Y
Sbjct: 130 KPTNVLVNGNGQV--KLCDFGVSGNLVASLAKT---NIGCQSYMAPERIKSGGPNQNPTY 184
Query: 164 SAAVDVWSVGCIFAEL-LGR 182
+ DVWS+G E+ LGR
Sbjct: 185 TVQSDVWSLGLSILEMALGR 204
>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 1. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK1,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK1 plays a role in the regulation
of translational control and transcriptional activation.
It phosphorylates the transcription factors, CREB and
NFkappaB. It also phosphorylates the nucleosomal
proteins H3 and HMG-14. Increased phosphorylation of
MEK1 is associated with the development of cerebral
ischemic/hypoxic preconditioning.
Length = 290
Score = 33.8 bits (77), Expect = 0.11
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 125 ICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARH-YSAAVDVWSVGCIFAELL 180
+ DFGL++ D + T Y AP+I+ G + AVD WS+G + ELL
Sbjct: 146 LTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELL 202
Score = 28.0 bits (62), Expect = 8.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSN 390
+L++LH I++RDIK N+L++SN
Sbjct: 117 ALEHLHKLGIIYRDIKLENILLDSN 141
>gnl|CDD|220388 pfam09766, FimP, Fms-interacting protein. This entry carries part
of the crucial 144 N-terminal residues of the FmiP
protein, which is essential for the binding of the
protein to the cytoplasmic domain of activated
Fms-molecules in M-CSF induced haematopoietic
differentiation of macrophages. The C-terminus contains
a putative nuclear localisation sequence and a leucine
zipper which suggest further, as yet unknown, nuclear
functions. The level of FMIP expression might form a
threshold that determines whether cells differentiate
into macrophages or into granulocytes.
Length = 352
Score = 33.9 bits (78), Expect = 0.11
Identities = 11/63 (17%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSR----RKPF 88
E++ K +++++ ++ ++ + + + EEE +R+++RR ++K +K+ + P
Sbjct: 199 EEEAKAFEQQKESSEQSQDDDSDSDEEEEQKRQKKRRSTDQEKLDDKRLKNSKLYEVHPL 258
Query: 89 KLS 91
+
Sbjct: 259 SVE 261
Score = 28.9 bits (65), Expect = 4.4
Identities = 12/54 (22%), Positives = 34/54 (62%)
Query: 41 KKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEIS 94
+++K+ E+ + ++ + EEE ++R+++RR +++ + KR K +++ +S
Sbjct: 206 EQQKESSEQSQDDDSDSDEEEEQKRQKKRRSTDQEKLDDKRLKNSKLYEVHPLS 259
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 34.0 bits (78), Expect = 0.12
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNS 389
+L YLHS I++RD+KP N+L++S
Sbjct: 108 ALGYLHSLNIIYRDLKPENILLDS 131
Score = 32.8 bits (75), Expect = 0.27
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 127 DFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
DFGL + E + +K + T Y APE+L + Y VD W +G + E+L
Sbjct: 139 DFGLCK-EGIEHSKTTSTFCGTPEYLAPEVLR-KQPYDRTVDWWCLGAVLYEML 190
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 31.9 bits (73), Expect = 0.12
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 40 KKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
K +E++K++ EE E+ E E R+ R R+ +RK+ E++R
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERR 81
Score = 29.6 bits (67), Expect = 0.74
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 37 KEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
K+E++++++ +E E+ EE E E + R R+ +R+R +ER KK RR
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 28.8 bits (65), Expect = 1.2
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 47 KEEEEGEEEEEGEEEGRR---RRRRRRRRRKKEREKKRSSRRK 86
K+EEE +E+ E E+ R R R+ R RK++R++ RRK
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRK 82
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 34.1 bits (79), Expect = 0.12
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
KE + + E+++E++++EEEE EEE
Sbjct: 289 KEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEA 321
Score = 32.9 bits (76), Expect = 0.28
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 20 KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
+ E+ K+ + + E++++EEEE EEEE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEA 321
Score = 32.1 bits (74), Expect = 0.42
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
K +E K+ + + +E++++EE+++E++ EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAA 323
Score = 31.4 bits (72), Expect = 0.71
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+ EE+++E++++EEEE EEE
Sbjct: 297 QAAAAEEEEEEEEEEEEEEPSEEEAAA 323
Score = 30.6 bits (70), Expect = 1.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 37 KEEKKKEKKKKEEEEGEEEEEGEEEG 62
+++E++++EEEE E EE G
Sbjct: 299 AAAEEEEEEEEEEEEEEPSEEEAAAG 324
Score = 30.2 bits (69), Expect = 1.8
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K+ +E K+ + + +EE+++E++++EEE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 30.2 bits (69), Expect = 1.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K+ +E K+ + + +E++++EEEE EEE EE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAA 322
Score = 29.8 bits (68), Expect = 2.6
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
K ++ K+ + + ++EE+++E++++EE EE G
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAG 324
Score = 28.3 bits (64), Expect = 7.4
Identities = 8/36 (22%), Positives = 23/36 (63%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE 39
E+ KE + + +E++++E+++++E+ +EE
Sbjct: 285 DEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 28.3 bits (64), Expect = 7.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
K ++ K+ + + ++E++++EEEE EE E E
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 32.2 bits (74), Expect = 0.12
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 10/56 (17%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKK-----KKKEKKKKE-----EKKKEKKKK 47
K K ++E + K KEK+KK+KKKKE + + +EKKK+E +K +E KK+
Sbjct: 62 KGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
Score = 31.5 bits (72), Expect = 0.28
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 10/47 (21%)
Query: 1 EKKKEKKKEKKKEKKKEKK------KKEKKKKE----KKKKKEKKKK 37
+ K K+KEKKK+KKKE + +EKKK+E +KK +E KK+
Sbjct: 71 VEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
Score = 31.1 bits (71), Expect = 0.36
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE---EKKKEKKKKEEEE 51
+ K K ++E + + K+KEKKKKK+K+ ++ + +EKKK+E E
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAE 106
Score = 30.7 bits (70), Expect = 0.48
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 10/56 (17%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK------KKEEKKKE----KKKKEE 49
+ +K K ++ + K ++K+K+KKKKKE + +E+KK+E +KK EE
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEE 113
Score = 27.6 bits (62), Expect = 4.5
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 11/52 (21%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKK------KKEKKKKKE----KKKKEEKKK 42
++ + K K+KEKKK KKKKE + +EKKK++ KK +E+KK+
Sbjct: 67 REEAVEAKAKEKEKKK-KKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
Score = 27.6 bits (62), Expect = 5.0
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 4 KEKKKEKKKEKKKEKKKKE--------KKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K +++EK++ K+ + E +K K ++E + + K+KEKKKK+++E
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKE 87
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 34.0 bits (78), Expect = 0.12
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 29 KKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSR 84
+ K++ K + K+ KK+K+ EE ++E + E E R RRR + K R +R R
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREE-KDELDDEVEFVRSFAPRRRVQWKGRRVRRVLR 76
Score = 32.1 bits (73), Expect = 0.46
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
+ + + K K K+ +K+K++++K+E + E E RRR + + RR ++
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREEKDELDDEVEFVRSFAPRRRVQWKGRRVRR 73
>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C iota.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, iota isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-iota is directly implicated in carcinogenesis. It is
critical to oncogenic signaling mediated by Ras and
Bcr-Abl. The PKC-iota gene is the target of
tumor-specific gene amplification in many human cancers,
and has been identified as a human oncogene. In addition
to its role in transformed growth, PKC-iota also
promotes invasion, chemoresistance, and tumor cell
survival. Expression profiling of PKC-iota is a
prognostic marker of poor clinical outcome in several
human cancers. PKC-iota also plays a role in
establishing cell polarity, and has critical embryonic
functions.
Length = 329
Score = 33.9 bits (77), Expect = 0.12
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 76 EREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQLVMYQATYSSKICDFGLARVEE 135
+R++K F +EIS G R V+ + K+ D+G+ + E
Sbjct: 88 QRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCK-EG 146
Query: 136 PDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRRILF 186
P + T Y APEIL G Y +VD W++G + E++ R F
Sbjct: 147 LRPGDTTSTFCGTPNYIAPEILRG-EDYGFSVDWWALGVLMFEMMAGRSPF 196
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 33.8 bits (77), Expect = 0.12
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNS 389
+L YLHS I++RD+KP N+L++S
Sbjct: 108 ALGYLHSINIVYRDLKPENILLDS 131
>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 4. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 4 (FGFR4); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR4 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Unlike other FGFRs,
there is only one splice form of FGFR4. It binds FGF1,
FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective
ligand for FGFR4. Although disruption of FGFR4 in mice
causes no obvious phenotype, in vivo inhibition of FGFR4
in cultured skeletal muscle cells resulted in an arrest
of muscle progenitor differentiation. FGF6 and FGFR4 are
uniquely expressed in myofibers and satellite cells.
FGF6/FGFR4 signaling appears to play a key role in the
regulation of muscle regeneration. A polymorphism in
FGFR4 is found in head and neck squamous cell carcinoma.
Length = 314
Score = 33.8 bits (77), Expect = 0.12
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFGLAR V + D K + + + APE L R Y+ DVWS G + E+
Sbjct: 174 KIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFD-RVYTHQSDVWSFGILMWEIF 230
Score = 28.4 bits (63), Expect = 6.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ ++YL S R +HRD+ N+LV + ++K
Sbjct: 145 RGMEYLESRRCIHRDLAARNVLVTEDNVMK 174
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Yes (or c-Yes) is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates
with a number of proteins in different cell types that
Src does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle
trafficking in polarized cells.
Length = 260
Score = 33.9 bits (77), Expect = 0.12
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
KI DFGLAR+ E + A + APE + R ++ DVWS G + EL+ +
Sbjct: 142 KIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR-FTIKSDVWSFGILLTELVTK 199
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). The InsR subfamily
is composed of InsR, Insulin-like Growth Factor-1
Receptor (IGF-1R), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In
cells expressing both receptors, InsR/IGF-1R hybrids are
found together with classical receptors. Both receptors
can interact with common adaptor molecules such as IRS-1
and IRS-2.
Length = 277
Score = 33.9 bits (78), Expect = 0.12
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFG+ R + E D + + ++ + APE L ++ DVWS G + E+
Sbjct: 159 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGV-FTTKSDVWSFGVVLWEMA 215
Score = 27.7 bits (62), Expect = 9.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 369 YLHSARILHRDIKPGNLLVNSNCILK 394
YL + + +HRD+ N +V + +K
Sbjct: 134 YLAAKKFVHRDLAARNCMVAEDLTVK 159
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 33.3 bits (76), Expect = 0.13
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E+ KEK +E + KK + + E+ ++ ++ KE EK EEE E+E+
Sbjct: 21 EELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEK 73
Score = 32.9 bits (75), Expect = 0.17
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+K EK ++ +E K+K ++ + KK + + EE + ++ +E E+ + E
Sbjct: 6 EEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIE 65
Query: 61 EGRRRRRRRRRRRKKEREKKRSS---RRKPFKLSEI 93
E + + + KE + S+ K KL EI
Sbjct: 66 EEISEKEKVMSEKLKEPAQMSSTSEEEEKKAKLEEI 101
>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein
Serine/Threonine Kinase, 70 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 70 kDa
ribosomal protein S6 kinase (p70S6K) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The p70S6K subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. p70S6K (or S6K)
contains only one catalytic kinase domain, unlike p90
ribosomal S6 kinases (RSKs). It acts as a downstream
effector of the STK mTOR (mammalian Target of Rapamycin)
and plays a role in the regulation of the translation
machinery during protein synthesis. p70S6K also plays a
pivotal role in regulating cell size and glucose
homeostasis. Its targets include S6, the translation
initiation factor eIF3, and the insulin receptor
substrate IRS-1, among others. Mammals contain two
isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta).
Length = 323
Score = 34.0 bits (78), Expect = 0.13
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 88 FKLSEISATRPDSTIDGYQARQPTRQLVMYQATYSSKICDFGLARVEEPDPNKAMTQEVV 147
F LSEIS G R + ++ A K+ DFGL + E +T
Sbjct: 104 FYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCK--ESIHEGTVTHTFC 161
Query: 148 -TQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
T Y APEILM + H AVD WS+G + ++L
Sbjct: 162 GTIEYMAPEILMRSGH-GKAVDWWSLGALMYDML 194
Score = 30.9 bits (70), Expect = 1.1
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSN 390
+L++LH I++RD+KP N+L+++
Sbjct: 112 ALEHLHQQGIIYRDLKPENILLDAQ 136
>gnl|CDD|221673 pfam12626, PolyA_pol_arg_C, Polymerase A arginine-rich C-terminus.
The C-terminus of polymerase A in E coli is
arginine-rich and is necessary for full functioning of
the enzyme.
Length = 123
Score = 32.2 bits (74), Expect = 0.13
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 55 EEEGEEEGRRRRRRRRRRRKK 75
E EG +RRRRR RRRKK
Sbjct: 103 EALQGREGGKRRRRRPRRRKK 123
Score = 29.9 bits (68), Expect = 0.86
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 54 EEEEGEEEGRRRRRRRRRRRK 74
E +G E G+RRRRR RRR+K
Sbjct: 103 EALQGREGGKRRRRRPRRRKK 123
Score = 27.9 bits (63), Expect = 3.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREK 79
E +E + E R +RRRRR + R+K
Sbjct: 92 EADEEQRRAMIEALQGREGGKRRRRRPRRRKK 123
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 32.3 bits (72), Expect = 0.13
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
KKE + EKK EK + E +KK +K + E +KK EK + + +KE E+ + ++
Sbjct: 60 KKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDK 110
Score = 31.9 bits (71), Expect = 0.18
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
E + + E K++ +++KK EK + E +KK EK + E++KK +K + E+E E E+
Sbjct: 49 EDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFED 104
Score = 29.2 bits (64), Expect = 1.3
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E K + KK+ E +KK +K + E +KK EK + + +K+ E+ E E+E E E
Sbjct: 51 EMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFE 103
Score = 27.3 bits (59), Expect = 6.0
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
++KK +K E + EKK EK + E +KK +K + E +K+ E KK
Sbjct: 65 DEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDKK 111
Score = 27.3 bits (59), Expect = 7.3
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
+++ K + KK+ E +KK EK + E++KK +K + E+E + E+ E+ +
Sbjct: 49 EDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEK 100
Score = 26.9 bits (58), Expect = 8.4
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K + +K+ +++KK EK + +++KK E+ + E +KK E+ E+E+ E+
Sbjct: 53 KTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFED 104
>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 1. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 1 (FGFR1); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR1 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Alternative splicing of
FGFR1 transcripts produces a variety of isoforms, which
are differentially expressed in cells. FGFR1 binds the
ligands, FGF1 and FGF2, with high affinity and has also
been reported to bind FGF4, FGF6, and FGF9. FGFR1
signaling is critical in the control of cell migration
during embryo development. It promotes cell
proliferation in fibroblasts. Nuclear FGFR1 plays a role
in the regulation of transcription. Mutations,
insertions or deletions of FGFR1 have been identified in
patients with Kallman's syndrome (KS), an inherited
disorder characterized by hypogonadotropic hypogonadism
and loss of olfaction. Aberrant FGFR1 expression has
been found in some human cancers including 8P11
myeloproliferative syndrome (EMS), breast cancer, and
pancreatic adenocarcinoma.
Length = 307
Score = 33.8 bits (77), Expect = 0.14
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFGLAR + D K T + + APE L R Y+ DVWS G + E+
Sbjct: 180 KIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFD-RIYTHQSDVWSFGVLLWEIF 236
>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 2. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 2 (FGFR2); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR2 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. There are many splice
variants of FGFR2 which show differential expression and
binding to FGF ligands. Disruption of either FGFR2 or
FGFR2b is lethal in mice, due to defects in the placenta
or severe impairment of tissue development including
lung, limb, and thyroid, respectively. Disruption of
FGFR2c in mice results in defective bone and skull
development. Genetic alterations of FGFR2 are associated
with many human skeletal disorders including Apert
syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and
Pfeiffer syndrome.
Length = 304
Score = 33.8 bits (77), Expect = 0.14
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI DFGLAR V D K T + + APE L R Y+ DVWS G + E+
Sbjct: 177 KIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFD-RVYTHQSDVWSFGVLMWEIF 233
Score = 28.4 bits (63), Expect = 6.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ ++YL S + +HRD+ N+LV N ++K
Sbjct: 148 RGMEYLASQKCIHRDLAARNVLVTENNVMK 177
>gnl|CDD|225435 COG2880, COG2880, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 67
Score = 30.9 bits (70), Expect = 0.14
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
KE +K + + ++K E K K+ +E E EE E+E
Sbjct: 25 KEGEKVKIVIRVKEKIYEILKGSLKEIKEILEEILEEIEDERL 67
Score = 27.5 bits (61), Expect = 2.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
K +K K+ EK K + ++K E K K+ KE ++ ++ E+E
Sbjct: 17 KPLKKVDLKEGEKVKIVIRVKEKIYEILKGSLKEIKEILEEILEEIEDE 65
>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP
kinase kinase 4 (MKK4) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK4 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK4 is a dual-specificity PK that
phosphorylates and activates the downstream targets,
c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific
threonine and tyrosine residues. JNK and p38 are
collectively known as stress-activated MAPKs, as they
are activated in response to a variety of environmental
stresses and pro-inflammatory cytokines. Their
activation is associated with the induction of cell
death. Mice deficient in MKK4 die during embryogenesis
and display anemia, severe liver hemorrhage, and
abnormal hepatogenesis. MKK4 may also play roles in the
immune system and in cardiac hypertrophy. It plays a
major role in cancer as a tumor and metastasis
suppressor. Under certain conditions, MKK4 is
pro-oncogenic.
Length = 288
Score = 33.5 bits (77), Expect = 0.14
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 362 AAFKSLKYLHSA-RILHRDIKPGNLLVNSN 390
A K+L YL +I+HRD+KP N+L++ N
Sbjct: 115 ATVKALNYLKEELKIIHRDVKPSNILLDRN 144
Score = 30.0 bits (68), Expect = 1.9
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 124 KICDFGLA-RVEEPDPNKAMTQEVVTQYYRAPEILM--GARHYSAAVDVWSVGCIFAEL 179
K+CDFG++ ++ + + A T++ + Y APE + Y DVWS+G E+
Sbjct: 148 KLCDFGISGQLVD---SIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEV 203
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 33.6 bits (77), Expect = 0.14
Identities = 24/79 (30%), Positives = 49/79 (62%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+K + K + E+K+KE K++++KK+ E++KK++K+ K K+ E + + +E
Sbjct: 266 PSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQE 325
Query: 62 GRRRRRRRRRRRKKEREKK 80
R+ + + R+ +KEREK+
Sbjct: 326 ERKEQLAKLRKEEKEREKE 344
Score = 32.1 bits (73), Expect = 0.45
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+KK+EKK ++ + ++E K EKK++E + KK+ K K EE E+ EE E
Sbjct: 16 KKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKANPVPASVKLPLYEEIMEQNEERRE 75
Query: 61 EGRRRRRRRRRRRKK-----EREKKRSSRRKPFKLSEISATRP 98
E R + + +K ERE+++ + S S P
Sbjct: 76 EVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREP 118
Score = 30.5 bits (69), Expect = 1.3
Identities = 24/80 (30%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE---EEEEG 58
KK E + + ++KEK+ KE+++K++ ++++KKKKE K K++ E + +EE
Sbjct: 269 KKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERK 328
Query: 59 EEEGRRRRRRRRRRRKKERE 78
E+ + R+ + R ++ E+E
Sbjct: 329 EQLAKLRKEEKEREKEYEQE 348
Score = 29.7 bits (67), Expect = 2.4
Identities = 20/81 (24%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + ++KEK+ ++++EKK+ E++KK+KK+ K K+ + + +K +EE +E
Sbjct: 276 KFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKE------ 329
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
+ + R+ +++E+E ++
Sbjct: 330 ---QLAKLRKEEKEREKEYEQ 347
Score = 29.4 bits (66), Expect = 3.5
Identities = 15/86 (17%), Positives = 40/86 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ +E K ++K +K + K + E+K+++ K+++E+ E E+ ++
Sbjct: 243 TYLDQENISAGEENLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKK 302
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
+ + ++R + +K RK
Sbjct: 303 KKEMAPKVKQRFEANDPAQKLQEERK 328
Score = 28.6 bits (64), Expect = 6.1
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKK----------EKKKKEEKKKEKKKKEEEEG 52
++E++K+ +K E++ K+ K K + K +EE+ K K + +
Sbjct: 96 EREEQKKAILPRKLRSSTSEREPKKFKAKPVPKSIYIPLLKDKMQEEELKRKIRVQMRAQ 155
Query: 53 EEEEEGEEEGR--RRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPD 99
E + R + + R +KK+R +K+S +K + + + PD
Sbjct: 156 ELLQSSRLPPRMAKHEAQERLTKKKKRGQKKSKYKKKTFKPKRAKSIPD 204
Score = 27.8 bits (62), Expect = 9.8
Identities = 19/61 (31%), Positives = 42/61 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++++EKK+ ++++KKK++ + K++ + +K +EE+K++ K +EE E E+E E+
Sbjct: 288 KEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQLAKLRKEEKEREKEYEQ 347
Query: 61 E 61
E
Sbjct: 348 E 348
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. There are five
VEGF ligands in mammals, which bind, in an overlapping
pattern to the three VEGFRs, which can form homo or
heterodimers. VEGFRs regulate the cardiovascular system.
They are critical for vascular development during
embryogenesis and blood vessel formation in adults. They
induce cellular functions common to other growth factor
receptors such as cell migration, survival, and
proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta
growth factor (PLGF). It regulates monocyte and
macrophage migration, vascular permeability,
haematopoiesis, and the recruitment of haematopietic
progenitor cells from the bone marrow.
Length = 337
Score = 33.7 bits (77), Expect = 0.14
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEV-VTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
KICDFGLAR DP+ + + + APE + + Y+ DVWS G + E+
Sbjct: 213 KICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFD-KVYTTQSDVWSFGVLLWEI 268
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 32.8 bits (75), Expect = 0.15
Identities = 14/72 (19%), Positives = 33/72 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ +++ +++ +K+K + KE+K K+ + + +K + + GEEE + +E
Sbjct: 93 AGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVDKSQASLDYGEEETQQQE 152
Query: 61 EGRRRRRRRRRR 72
RR
Sbjct: 153 AQSGPNNFGRRI 164
Score = 31.6 bits (72), Expect = 0.38
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE--EGEEEEEGEEEG 62
+ +KE +++ +++K K++K K ++ K + + EEE ++E
Sbjct: 94 GESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVDKSQASLDYGEEETQQQEA 153
Query: 63 RRRRRRRRRRR 73
+ RR
Sbjct: 154 QSGPNNFGRRI 164
Score = 30.5 bits (69), Expect = 0.96
Identities = 10/79 (12%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE--EEG 58
+ +++ +++ +++K ++K++K K ++ + + + G
Sbjct: 85 ASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVDKSQASLDYG 144
Query: 59 EEEGRRRRRRRR----RRR 73
EEE +++ + RR
Sbjct: 145 EEETQQQEAQSGPNNFGRR 163
Score = 27.8 bits (62), Expect = 6.2
Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 7 KKEKKKEKKKEK-----KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++E K+E + E+ + + ++K+ E++ +K+K + E + +
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPR 127
Query: 62 GRRRR 66
G +
Sbjct: 128 GGTQD 132
Score = 27.8 bits (62), Expect = 7.4
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR----RRRKKEREKKRSSRRKPF 88
E++ KEE + E++ + + + E R+ + ++RK R+K+R S + P
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPR 127
Query: 89 KLSEISATRPDSTID 103
++ + +++D
Sbjct: 128 GGTQDVVDKSQASLD 142
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 33.6 bits (77), Expect = 0.15
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 124 KICDFGLARVEEPDPN---KAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
KICDFGLAR D N K + V + APE + Y+ DVWS G + E+
Sbjct: 181 KICDFGLARDIMNDSNYVVKGNARLPVK--WMAPESIFNCV-YTFESDVWSYGILLWEI 236
>gnl|CDD|205286 pfam13105, DUF3959, Protein of unknown function (DUF3959). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 260 amino acids in length.
Length = 242
Score = 33.3 bits (76), Expect = 0.15
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 20/89 (22%)
Query: 2 KKKEKKKEKK---KEKKKEKK----------KKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
K+K+ KE K+KKK KK K K K K +K K+ +K E +E
Sbjct: 153 KEKDDNKENINLFKQKKKRKKLSFKIRLPRLPKLKMKLFKFGRKPSNSKDPRKYEHNYEE 212
Query: 49 E-------EEGEEEEEGEEEGRRRRRRRR 70
E ++ +E +G+ R RRR
Sbjct: 213 NVPMYHMTEPIDQYKEPTTQGQTRMERRR 241
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 33.9 bits (78), Expect = 0.15
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 29 KKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE--EEGRRRRRRRRRRRKKEREKKRSSRRK 86
KK++ K+ E+ ++ +KE EE E E E R R ++R+ ++ERE+ + +
Sbjct: 26 KKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEER 85
Query: 87 PFKLSEISATR 97
+ E R
Sbjct: 86 LVQKEEQLDAR 96
Score = 31.6 bits (72), Expect = 0.72
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
KK++ K+ ++ +E +K+ E+K E E +E E ++ RR R +R++ER
Sbjct: 26 KKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEER 85
Query: 78 EKKRS 82
++
Sbjct: 86 LVQKE 90
Score = 31.2 bits (71), Expect = 0.89
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR-RRRRRKKEREKKR 81
KK++ K+ E+ +E +K+ ++K E E +E E ++R+ RR R + +RE++R
Sbjct: 26 KKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEER 85
Query: 82 SSRRKPFK 89
+++
Sbjct: 86 LVQKEEQL 93
Score = 28.9 bits (65), Expect = 4.8
Identities = 11/57 (19%), Positives = 33/57 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
++ + +++E ++E+++ +K+E+ +K + + E++++ E E EE E+
Sbjct: 70 QEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEK 126
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Citron Rho-interacting kinase.
Serine/Threonine Kinases (STKs), Citron Rho-interacting
kinase (CRIK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CRIK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 33.6 bits (77), Expect = 0.15
Identities = 36/176 (20%), Positives = 54/176 (30%), Gaps = 34/176 (19%)
Query: 104 GYQARQPTRQLVMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHY 163
GY R + V+ T K+ DFG A + V T Y APE+L
Sbjct: 122 GYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGD 181
Query: 164 SAAV-----DVWSVGCIFAELLGRRILFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAK 218
D WS+G I E++ R F + + I M
Sbjct: 182 GKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNI-----------MNF------ 224
Query: 219 CHMLRQTRKSQSLSSLYSLSSQATGEAVHLLVQMLYFDPTKRISVNSALCHPYLDE 274
++ +SS L+Q L +R+ CHP+ +
Sbjct: 225 -------QRFLKFPEDPKVSSDFLD-----LIQSLLCGQKERLGYEGLCCHPFFSK 268
Score = 28.2 bits (63), Expect = 8.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 370 LHSARILHRDIKPGNLLVN 388
+H +HRDIKP N+L++
Sbjct: 118 VHQMGYVHRDIKPENVLID 136
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein
Tyrosine Kinase (PTK) family; RET (REarranged during
Transfection) protein; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial medullary
thyroid carcinoma (FMTC).
Length = 290
Score = 33.4 bits (76), Expect = 0.16
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARH-YSAAVDVWSVGCIFAELL 180
KI DFGL+R V E D ++ + + A E L H Y+ DVWS G + E++
Sbjct: 167 KISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESL--FDHIYTTQSDVWSFGVLLWEIV 223
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 33.5 bits (77), Expect = 0.16
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
EEE E EEE EE+ R R+R + + +++ R +
Sbjct: 154 EEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQ 192
Score = 33.1 bits (76), Expect = 0.24
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
EEEE EE EE EE R R+R ++ +E++ RR
Sbjct: 153 EEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRR 190
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 33.1 bits (76), Expect = 0.16
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K KE +K+++K+++ +KK E+ + KK +KE +K++ K E K K
Sbjct: 153 KLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLK 198
Score = 31.1 bits (71), Expect = 0.70
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
E K E+K KE E+ EE++E E + R R ++ +KE EK+
Sbjct: 146 ESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKR 188
Score = 29.2 bits (66), Expect = 3.5
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
K+E+K+E+ EKK E+ + KK +++ +K++ K E K K K + E
Sbjct: 159 KQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKARNE 205
>gnl|CDD|217010 pfam02387, IncFII_repA, IncFII RepA protein family. This protein
is plasmid encoded and found to be essential for plasmid
replication.
Length = 279
Score = 33.5 bits (77), Expect = 0.16
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
+EK +K++ E + K+ KKK +E + E R R +K KK
Sbjct: 165 EEKLNSARKQQLEWENKKLKKKGLIPLTLDEARRRAK---EFHIERAFSYRTERKAFGKK 221
Query: 81 RSSRRKPFKLSEISA 95
R RK KL E
Sbjct: 222 RRRARKLAKLDEKDI 236
>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C zeta.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, zeta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-zeta plays a critical role in activating the glucose
transport response. It is activated by glucose, insulin,
and exercise through diverse pathways. PKC-zeta also
plays a central role in maintaining cell polarity in
yeast and mammalian cells. In addition, it affects actin
remodeling in muscle cells.
Length = 327
Score = 33.5 bits (76), Expect = 0.16
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ D+G+ + E P + T Y APEIL G Y +VD W++G + E++ R
Sbjct: 136 KLTDYGMCK-EGLGPGDTTSTFCGTPNYIAPEILRG-EEYGFSVDWWALGVLMFEMMAGR 193
Query: 184 ILF 186
F
Sbjct: 194 SPF 196
>gnl|CDD|221324 pfam11933, DUF3451, Domain of unknown function (DUF3451). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 199 to 238 amino acids in length. This domain
is found associated with pfam06512, pfam00520. This
domain has a conserved ADD sequence motif.
Length = 222
Score = 33.2 bits (76), Expect = 0.17
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 28 KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSS 83
+ K+ + + ++ KKE+ EEG+ E+E + E R+R R +K R+ +S
Sbjct: 9 ESAKERRNRNDKNKKEEHSIGSEEGDSEKEPKSESADGRKRCRFLLRKTRKVSQSL 64
Score = 32.8 bits (75), Expect = 0.21
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 34 KKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
+ KE + + K K+EE EEG+ E + + R++ R RK K+S+
Sbjct: 9 ESAKERRNRNDKNKKEEHSIGSEEGDSE-----KEPKSESADGRKRCRFLLRKTRKVSQS 63
Query: 94 SATRPDS 100
+ P S
Sbjct: 64 LLSLPGS 70
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 33.7 bits (77), Expect = 0.17
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 123 SKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARH-----YSAAVDVWSVGCIFA 177
+KICDFGLAR D N VV R P M Y+ DVWS G +
Sbjct: 253 TKICDFGLARDIRNDSNY-----VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLW 307
Query: 178 ELL 180
E+
Sbjct: 308 EIF 310
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 33.0 bits (76), Expect = 0.17
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
K+ E ++KKK E++KK+KKKK KKKK KK K
Sbjct: 163 IKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMK 204
Score = 33.0 bits (76), Expect = 0.18
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
++ + + +KK ++EKKKK+KK K+KK K+ K
Sbjct: 164 KEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 33.0 bits (76), Expect = 0.18
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
++ + + +KK +E+KKK+KKK KKKK +K K
Sbjct: 164 KEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 32.3 bits (74), Expect = 0.33
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
KK++ K+ E ++KKK ++EKKKKK+K K++K K+
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 31.5 bits (72), Expect = 0.58
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 2 KKKEKKKEKK---KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
KK E+ K+K+ KE + + KK+ E++KKK+KKK +KKK KK
Sbjct: 151 KKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 30.4 bits (69), Expect = 1.3
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK--KKEEEEG 52
KK ++ +KK+ KE + KKK ++EKKKK++K +KK KK G
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVG 202
Score = 28.0 bits (63), Expect = 7.4
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E+ K+K+ + K+ + KKK +E+KKKK+KK KKK+ KK
Sbjct: 154 ERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSA--KKKKLKKV 198
>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 3.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR3 (or Flt4) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. VEGFR3
preferentially binds the ligands VEGFC and VEGFD. VEGFR3
is essential for lymphatic endothelial cell (EC)
development and function. It has been shown to regulate
adaptive immunity during corneal transplantation. VEGFR3
is upregulated on blood vascular ECs in pathological
conditions such as vascular tumors and the periphery of
solid tumors. It plays a role in cancer progression and
lymph node metastasis. Missense mutations in the VEGFR3
gene are associated with primary human lymphedema.
Length = 338
Score = 33.4 bits (76), Expect = 0.17
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEV-VTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KICDFGLAR DP+ + + APE + + Y+ DVWS G + E+
Sbjct: 214 KICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFD-KVYTTQSDVWSFGVLLWEIF 270
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein
7 homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 32.3 bits (74), Expect = 0.17
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Query: 1 EKKKEKKKEKKKEKKKE--------KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+K++E++KE+K+++ + KK + K +K+ K E++KK+KKKKE
Sbjct: 31 DKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKE 86
Score = 30.3 bits (69), Expect = 0.75
Identities = 24/89 (26%), Positives = 51/89 (57%), Gaps = 13/89 (14%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKE-------KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
++ +K++E++KE+K+KE + E KK ++ K ++E K ++E++ ++++E
Sbjct: 28 EEYDKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKEL 87
Query: 59 EEEGRRRRRRRRR------RRKKEREKKR 81
+ R + R +R R+K E +KKR
Sbjct: 88 KNFYRFQIRESKRNELAELRKKFEEDKKR 116
Score = 29.2 bits (66), Expect = 1.7
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKK-----KKKEKKKKE-----EKKKEKKKK 47
+ K +KE K EK+KK+KKKKE K + +E K+ E +K +E KK+
Sbjct: 61 RPKTARKESVAAKAAEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEEDKKR 116
Score = 28.4 bits (64), Expect = 3.2
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK------KKEEKKKE----KKKKEEE 50
K+ ++ K K+ K +K+K+KKKKKE K +E K+ E +KK EE+
Sbjct: 56 TKKGRRPKTARKESVAAKAAEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEED 113
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK2 and MSK1 play nonredundant
roles in activating histone H3 kinases, which play
pivotal roles in compaction of the chromatin fiber. MSK2
is the required H3 kinase in response to stress stimuli
and activation of the p38 MAPK pathway. MSK2 also plays
a role in the pathogenesis of psoriasis.
Length = 332
Score = 33.4 bits (76), Expect = 0.17
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 125 ICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
+ DFGL++ + + T Y APEI+ G + AVD WS+G + ELL
Sbjct: 146 LTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELL 201
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 33.2 bits (76), Expect = 0.18
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
KI DFGL+R + D + ++ ++ + PE ++ + ++ D+WS G + E+
Sbjct: 164 KISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGK-FTTESDIWSFGVVLWEI 219
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to
196 amino acids in length.
Length = 149
Score = 32.3 bits (74), Expect = 0.18
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
K+ + ++ +K+ K +K K K ++KK + K+ E G
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
Score = 30.0 bits (68), Expect = 0.97
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
K+ + ++ ++K K +K K K+K+KK + K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 30.0 bits (68), Expect = 1.2
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
K+ + K +KK K ++ + K K+KK K + E + R RR
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESGIPKVVSNRMARR 60
Score = 29.6 bits (67), Expect = 1.4
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+++ + K +KK K K + K K++K K K+ E
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASES 47
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 33.1 bits (76), Expect = 0.18
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
KK K++ KKK K EK K +K KK K KK K K
Sbjct: 140 NKKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIK 180
Score = 30.8 bits (70), Expect = 1.2
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
KK K++ KKK K +K K KK +K K KK+ K K K + EE
Sbjct: 140 NKKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEE 189
Score = 30.0 bits (68), Expect = 1.7
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 2 KKKEKKKEKKKEKKKEKK-------KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
KK K EK K KK KK KK+ K K K K ++ K K+ K K++
Sbjct: 149 KKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLIKNKKLKNKQKT 204
Score = 29.3 bits (66), Expect = 3.8
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 13/59 (22%)
Query: 1 EKKKEKKKEKKKE---KKKEKKKKEKKKKE----------KKKKKEKKKKEEKKKEKKK 46
++KK ++ +K+ KKK K +K E KK K+E KKK K EK K
Sbjct: 101 KEKKIERFKKRVNAYFKKKSNKNGSVEKNECINNKNNVINKKIKEESKKKNSKNIEKLK 159
Score = 28.9 bits (65), Expect = 4.3
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 1 EKKKEKKKEKKKEKK------KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
KK K K K K K KK K K+K K K KE +KK KKK+ E+
Sbjct: 173 LKKDIKIKLLKIIKIEENFLIKNKKLKNKQKTLKNILYNLKDKELEKKGYKKKQIEK 229
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid
layers. The innermost capsid (core) is made of VP2. The
genomic RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 33.8 bits (77), Expect = 0.18
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE-------KKKKEEKKKEKKKKEEEEGEE 54
++ +EK EK+ +K + E K+K KK+E KE+ +E K +E +
Sbjct: 12 NNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEVKKS 71
Query: 55 EEE 57
+E
Sbjct: 72 TKE 74
Score = 31.8 bits (72), Expect = 0.65
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
+ + + ++K+ +K+ +K + E K+K KKEE
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEE 43
Score = 30.7 bits (69), Expect = 1.6
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
++E ++K+ +K+++K + E K+K KKE+ + + +E+ +E
Sbjct: 5 NRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQE---- 60
Query: 66 RRRRRRRRKKEREKKRSSRRKPFKLSEISATR 97
K E K+S++ + +L E+ T+
Sbjct: 61 ------NLKIADEVKKSTKEESKQLLEVLKTK 86
Score = 30.3 bits (68), Expect = 2.3
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK--KKKEEKKKEKKKKEEEEGEEEEE 57
+ + + ++ +EK +++ +K + + KEK KKEE + +E +E
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQEN 61
Score = 28.4 bits (63), Expect = 7.6
Identities = 9/53 (16%), Positives = 27/53 (50%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ +++ + ++K EK+ +K + + +EK +KK++ + + E+
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQ 56
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 33.5 bits (76), Expect = 0.18
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGL + E M T Y APE+L Y AVD W +G + E++ R
Sbjct: 136 KITDFGLCK-EGIKDGATMKTFCGTPEYLAPEVLED-NDYGRAVDWWGLGVVMYEMMCGR 193
Query: 184 ILFQAQSPVQQLGLI 198
+ F Q + LI
Sbjct: 194 LPFYNQDHEKLFELI 208
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 1. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
expressed and is under transcriptional control of
numerous stimuli including cell stress (cell shrinkage),
serum, hormones (gluco- and mineralocorticoids),
gonadotropins, growth factors, interleukin-6, and other
cytokines. It plays roles in sodium retention and
potassium elimination in the kidney, nutrient transport,
salt sensitivity, memory consolidation, and cardiac
repolarization. A common SGK1 variant is associated with
increased blood pressure and body weight. SGK1 may also
contribute to tumor growth, neurodegeneration, fibrosing
disease, and ischemia.
Length = 325
Score = 33.4 bits (76), Expect = 0.18
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 125 ICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
+ DFGL + E + N + T Y APE+L + Y VD W +G + E+L
Sbjct: 137 LTDFGLCK-ENIEHNGTTSTFCGTPEYLAPEVLH-KQPYDRTVDWWCLGAVLYEML 190
Score = 33.1 bits (75), Expect = 0.26
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNS 389
+L YLHS I++RD+KP N+L++S
Sbjct: 108 ALGYLHSLNIVYRDLKPENILLDS 131
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 33.7 bits (77), Expect = 0.18
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
++ ++HS ++HRDIK N+L+ SN ++K
Sbjct: 155 AVHHVHSKHMIHRDIKSANILLCSNGLVK 183
Score = 29.1 bits (65), Expect = 5.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 148 TQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
T YY APEI + YS D++S+G + ELL
Sbjct: 208 TPYYVAPEIWR-RKPYSKKADMFSLGVLLYELL 239
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 33.8 bits (78), Expect = 0.19
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 21/76 (27%)
Query: 6 KKKEKKKEKKKEKKKKEKKKK-------------EKKKKKEKKKKEEKKKEKKKKEEEE- 51
K K E+K E ++ ++ K +E+ KEE E+ KK E E
Sbjct: 221 VKPPPKPPMTPEEKDDEYDQRVRELTFDRRAQPTDRTKTEEELAKEEA--ERLKKLEAER 278
Query: 52 -----GEEEEEGEEEG 62
GEEE++ EEE
Sbjct: 279 LRRMRGEEEDDEEEED 294
Score = 31.9 bits (73), Expect = 0.70
Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 56/124 (45%)
Query: 1 EKKKEKK----------KEKKKEKKKEKKKKE--------------------KKKKEKKK 30
E+KK KK K K E++K K++ E K +
Sbjct: 170 ERKKSKKEVMKEVIAKSKFYKAERQKAKEEDEDLREELDDDFKDLMSLLRTVKPPPKPPM 229
Query: 31 KKEKKKKE----------EKK---KEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
E+K E +++ ++ K EEE +EE E R +K E
Sbjct: 230 TPEEKDDEYDQRVRELTFDRRAQPTDRTKTEEELAKEEAE-------------RLKKLEA 276
Query: 78 EKKR 81
E+ R
Sbjct: 277 ERLR 280
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association
with mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 31.3 bits (71), Expect = 0.19
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
EE+++E+++ + E+ +E+E +E RR RR + REK+ +
Sbjct: 11 EEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAE 59
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 31.5 bits (72), Expect = 0.19
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 3 KKEKKKEKKKEKKK------EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
K +K + KE+ K EK E KK++K K +E K +K++ K K+ + ++E
Sbjct: 13 KATQKPGQTKEQTKLIAQGIEKGIAEYKKQQKAKAREADK--ARKQQLKAKQRQAANDDE 70
Query: 57 EGEEE 61
E E
Sbjct: 71 EDTIE 75
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 31.6 bits (72), Expect = 0.19
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KK E +++ E+ KE+ ++ K+ ++ ++ ++ EE+ ++ ++ EE EE EEE
Sbjct: 13 KKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEA--REEAEEE 70
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
+ K + LSE
Sbjct: 71 AEEILAEAEKEASAILSKAAEGKVVEAALSEF 102
Score = 29.3 bits (66), Expect = 1.1
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
+E KK E E+ ++ +++ ++ K+ +++ E E EEE E+ + R ++
Sbjct: 10 REIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEE 69
Query: 76 EREKKRSSRRK 86
E E+ + K
Sbjct: 70 EAEEILAEAEK 80
Score = 28.9 bits (65), Expect = 1.5
Identities = 14/54 (25%), Positives = 36/54 (66%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+++ E+ KE+ ++ KE +++ ++ E+ +++ +K +E +E +++ EEE EE
Sbjct: 20 DEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEE 73
Score = 27.8 bits (62), Expect = 4.2
Identities = 15/71 (21%), Positives = 34/71 (47%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRR 71
+E KK + +++ +E K++ E+ KE +++ ++ EE E E E+ +E R
Sbjct: 10 REIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEE 69
Query: 72 RRKKEREKKRS 82
++ +
Sbjct: 70 EAEEILAEAEK 80
Score = 27.0 bits (60), Expect = 6.7
Identities = 12/59 (20%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK--KKKEEKKKEKKKKEEEEGEEEEE 57
E K+E ++ K+ +++ ++ E+ ++E +K ++ ++ E+ +E+ ++ E E+E
Sbjct: 25 EAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEAS 83
>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 3. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK3
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK3 (also known as beta-adrenergic
receptor kinase 2) is widely expressed in many tissues.
GRK3-deficient mice show a lack of olfactory receptor
desensitization and altered regulation of the M2
muscarinic airway. GRK3 is involved in modulating the
cholinergic response of airway smooth muscles. It also
plays a role in dopamine receptor regulation. GRK3
promoter polymorphisms may be associated with bipolar
disorder.
Length = 279
Score = 33.1 bits (75), Expect = 0.19
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 123 SKICDFGLA-RVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLG 181
+I D GLA + P+ + V T Y APE+L Y ++ D +S+GC+ +LL
Sbjct: 136 VRISDLGLACDFSKKKPHAS----VGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLL- 190
Query: 182 RRILFQAQSPVQQ 194
+ SP +Q
Sbjct: 191 -----RGHSPFRQ 198
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 32.4 bits (74), Expect = 0.20
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
KK+ ++ E E+ KK + K +K++K+ +KK +E +KE+KKK
Sbjct: 96 KKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKK 141
Score = 30.8 bits (70), Expect = 0.69
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + KK+ E+ + + E+ KK K +K++KE + +E E EE
Sbjct: 92 QDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
Score = 27.8 bits (62), Expect = 7.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+ + KK+ ++ E +E KK K KKE+K+ +K E +K+E
Sbjct: 92 QDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
Score = 27.4 bits (61), Expect = 9.6
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E E + + KK+ E+ + EE KK + K ++E+ E ++ +E
Sbjct: 85 NEMLAELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDE 133
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 32.9 bits (75), Expect = 0.20
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPE-ILMGARHYSAAVDVWSVG 173
++ T KI DFGLAR+ E + A + APE I G ++ DVWS G
Sbjct: 133 ILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT--FTIKSDVWSFG 190
Query: 174 CIFAELL 180
+ E++
Sbjct: 191 ILLTEIV 197
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP
kinase kinase 7 (MKK7) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK7 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK7 is a dual-specificity PK that phosphorylates and
activates its downstream target, c-Jun N-terminal kinase
(JNK), on specific threonine and tyrosine residues.
Although MKK7 is capable of dual phosphorylation, it
prefers to phosphorylate the threonine residue of JNK.
Thus, optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 33.1 bits (76), Expect = 0.20
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 362 AAFKSLKYL---HSARILHRDIKPGNLLVNSNCILK 394
A K+L YL H ++HRD+KP N+L++++ +K
Sbjct: 122 AIVKALHYLKEKHG--VIHRDVKPSNILLDASGNVK 155
Score = 28.1 bits (63), Expect = 7.4
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 124 KICDFGLA-RVEEPDPNKAMTQEVVTQYYRAPEIL---MGARHYSAAVDVWSVGCIFAEL 179
K+CDFG++ R+ + +KA T+ Y APE + Y DVWS+G EL
Sbjct: 155 KLCDFGISGRLVD---SKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVEL 211
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 32.4 bits (73), Expect = 0.20
Identities = 22/81 (27%), Positives = 54/81 (66%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++ +++E ++++++ ++KE+K K K +++EK+++EE+++ +K+KEE E EE E
Sbjct: 66 EERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAER 125
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
R + ++ ++ E+K+
Sbjct: 126 MRLEREKHFQQIEQERLERKK 146
Score = 30.8 bits (69), Expect = 0.78
Identities = 12/75 (16%), Positives = 51/75 (68%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRR 66
++E+++++++E++++++ ++E+ K++ +++ +++E +++EEE E+EE +
Sbjct: 38 QREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEE 97
Query: 67 RRRRRRRKKEREKKR 81
++ + ++ +K++
Sbjct: 98 EKQEQEEQERIQKQK 112
Score = 30.4 bits (68), Expect = 0.89
Identities = 23/90 (25%), Positives = 59/90 (65%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
++E+ + +++E K+ ++ +++E+ +++E+++ EK+++ K+K EEE ++E+E +E
Sbjct: 49 QEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERI 108
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
++++ R ++E E+ R R K F+ E
Sbjct: 109 QKQKEEAEARAREEAERMRLEREKHFQQIE 138
Score = 29.7 bits (66), Expect = 1.6
Identities = 22/86 (25%), Positives = 54/86 (62%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E++ +++E++ +K+EK K++ +++EK++++E+++ +++K+E + + EE E E
Sbjct: 72 EEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLERE 131
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
+ ++ + R RKK E+ RK
Sbjct: 132 KHFQQIEQERLERKKRLEEIMKRTRK 157
Score = 27.4 bits (60), Expect = 9.7
Identities = 16/70 (22%), Positives = 45/70 (64%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
EK+++ ++++E+++++ ++++E+ + E+++ + EE EEE RR+ R R ++++
Sbjct: 30 EKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEK 89
Query: 77 REKKRSSRRK 86
++K K
Sbjct: 90 AKRKAEEEEK 99
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 33.1 bits (75), Expect = 0.20
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 364 FKSLKYLHSARILHRDIKPGNLL 386
++L YLH +I+HRD+K GN+L
Sbjct: 113 LEALNYLHENKIIHRDLKAGNIL 135
Score = 28.4 bits (63), Expect = 7.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 148 TQYYRAPEILM----GARHYSAAVDVWSVGCIFAEL 179
T Y+ APE++M R Y DVWS+G E+
Sbjct: 166 TPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM 201
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 33.0 bits (75), Expect = 0.20
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 369 YLHSARILHRDIKPGNLLVNSNCILK 394
YLH+ ++HRDIK N+++ N I+K
Sbjct: 117 YLHNNCVVHRDIKGNNVMLMPNGIIK 142
Score = 32.2 bits (73), Expect = 0.35
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 115 VMYQATYSSKICDFGLAR--------VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAA 166
VM K+ DFG AR + K+M T Y+ APE++ Y
Sbjct: 133 VMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHG---TPYWMAPEVI-NESGYGRK 188
Query: 167 VDVWSVGCIFAEL 179
D+WS+GC E+
Sbjct: 189 SDIWSIGCTVFEM 201
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 33.5 bits (77), Expect = 0.21
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+E K+ KE ++ ++K ++ ++ + +EE KKE KK ++ E +
Sbjct: 453 EEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDT 505
Score = 32.4 bits (74), Expect = 0.55
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+ K+ ++ ++K ++ ++ + +E+ KKE KK KK E + EE
Sbjct: 456 KQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEE 511
Score = 31.6 bits (72), Expect = 0.74
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E +E +++ ++ ++ + ++E KK+ KK K+ + + EE G EE E+
Sbjct: 462 EAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINEETYEK 521
Score = 28.9 bits (65), Expect = 6.2
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E++ K E+ K+ K+ EE +++ ++ E+ E +EE ++E
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKE 492
Score = 28.5 bits (64), Expect = 7.0
Identities = 10/63 (15%), Positives = 29/63 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ K E+ K+ ++ ++ ++K E+ ++ + +E+ KKE + ++ +
Sbjct: 445 EEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVD 504
Query: 61 EGR 63
Sbjct: 505 TYL 507
Score = 28.5 bits (64), Expect = 7.1
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+E+ K +E K+ K+ +E ++K ++ E+ +EE +E
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKE 492
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 33.8 bits (77), Expect = 0.21
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE----EEGEEEEEG 58
++ K K+ KK KK + KK KKK KK +KK + EE EE EG
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEG 666
Query: 59 EEE 61
+E
Sbjct: 667 YDE 669
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 32.7 bits (75), Expect = 0.21
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
K KKKK KK++E KK K+K + K E +KK + + E + GR
Sbjct: 114 AKHYGIDLGKKKKYKKEEENKKAKKKSESLVAKLEVRKKNHKIDKALLEQFQSGR 168
Score = 28.8 bits (65), Expect = 4.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKK 31
KKK+ KKE++ +K K+K + K E +KK
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKK 152
Score = 28.0 bits (63), Expect = 6.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK 40
K+KK +K++E KK +KK + K E +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 28.0 bits (63), Expect = 6.4
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
K KKK+ KKE +E KK +KK + K E +KK K
Sbjct: 114 AKHYGIDLGKKKKYKKE---EENKKAKKKSESLVAKLEVRKKNHK 155
Score = 27.6 bits (62), Expect = 8.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK 40
KKK KK+E+ K+ KKK + K + ++K K +K
Sbjct: 124 KKKYKKEEENKKAKKKSESLVAKLEVRKKNHKIDK 158
>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy
protein kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Myotonic Dystrophy
protein kinase (DMPK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The DMPK-like subfamily is composed of DMPK
and DMPK-related cell division control protein 42
(Cdc42) binding kinase (MRCK). Three isoforms of MRCK
are known, named alpha, beta and gamma. The DMPK gene is
implicated in myotonic dystrophy 1 (DM1), an inherited
multisystemic disorder with symptoms that include muscle
hyperexcitability, progressive muscle weakness and
wasting, cataract development, testicular atrophy, and
cardiac conduction defects. The genetic basis for DM1 is
the mutational expansion of a CTG repeat in the 3'-UTR
of DMPK. DMPK is expressed in skeletal and cardiac
muscles, and in central nervous tissues. The functional
role of DMPK is not fully understood. It may play a role
in the signal transduction and homeostasis of calcium.
MRCK is activated via interaction with the small GTPase
Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent
cell motility. MRCKgamma is expressed in heart and
skeletal muscles, unlike MRCKalpha and MRCKbeta, which
are expressed ubiquitously.
Length = 331
Score = 33.2 bits (76), Expect = 0.21
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILM----GARHYSAAVDVWSVGCIFAEL 179
++ DFG D V T Y +PEIL G Y D WS+G E+
Sbjct: 142 RLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEM 201
Query: 180 LGRRILFQAQSPVQQLGLI 198
L F A+S V+ G I
Sbjct: 202 LYGETPFYAESLVETYGKI 220
Score = 30.9 bits (70), Expect = 1.1
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 17/54 (31%)
Query: 338 EEMHKF-IAEQLNTSRVPLCINPQSAAFKSLKYLHSARILHRDIKPGNLLVNSN 390
E+M +F +AE + L I+ +H +HRDIKP N+L++ N
Sbjct: 101 EDMARFYLAEMV------LAIDS----------VHQLGYVHRDIKPDNVLLDKN 138
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 33.2 bits (76), Expect = 0.21
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR- 64
++E ++ ++ E++ E +++ +++ E +++ + K E E + E E
Sbjct: 137 MQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEARGRAKEERENEDI 196
Query: 65 RRRRRRRRRKKEREKKRSSRRKPF 88
R + + +ERE S + F
Sbjct: 197 NREMLKLKANEERETVLESIKTTF 220
Score = 28.6 bits (64), Expect = 5.3
Identities = 20/87 (22%), Positives = 46/87 (52%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
K ++K + + E K KE + ++ + K E + E +++ + E+ ++ ++ + + R
Sbjct: 58 KMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELAR 117
Query: 71 RRRKKEREKKRSSRRKPFKLSEISATR 97
+R +KE E++R + K+ E S R
Sbjct: 118 KRYQKELEQQRRQNEELLKMQEESVLR 144
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 33.0 bits (75), Expect = 0.22
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 123 SKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
+K+ DFGLARV + + + + APE L + +S+ DVWS G + E+
Sbjct: 139 AKVSDFGLARVG----SMGVDNSKLPVKWTAPEALKHKK-FSSKSDVWSYGVLLWEVF 191
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 33.4 bits (77), Expect = 0.22
Identities = 15/81 (18%), Positives = 35/81 (43%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E+K E+ +++ +K++K+ ++++ + K K +K K + E+ E E R
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERP 299
Query: 65 RRRRRRRRRKKEREKKRSSRR 85
+ + KR +
Sbjct: 300 VEEGKPLAFRFPPPGKRLGKL 320
Score = 31.5 bits (72), Expect = 0.80
Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
++K ++ ++ +K++K+ K+++ ++ K K KK K
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAK----------------S 282
Query: 65 RRRRRRRRRKKEREKKRSSRRKPFKLSEISATRP 98
R +R + + E++ KP +
Sbjct: 283 RIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKR 316
Score = 29.1 bits (66), Expect = 4.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
E +K++K+ K++E ++ K K KK + + K +K E + EE EE +
Sbjct: 249 EAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGK 304
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Src (or c-Src) is a
cytoplasmic (or non-receptor) tyr kinase, containing an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region with a conserved tyr.
It is activated by autophosphorylation at the tyr kinase
domain, and is negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
c-Src is the vertebrate homolog of the oncogenic protein
(v-Src) from Rous sarcoma virus. Together with other Src
subfamily proteins, it is involved in signaling pathways
that regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Src also play a role in regulating cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Elevated levels of Src kinase activity
have been reported in a variety of human cancers.
Several inhibitors of Src have been developed as
anti-cancer drugs. Src is also implicated in acute
inflammatory responses and osteoclast function.
Length = 262
Score = 33.1 bits (75), Expect = 0.22
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
K+ DFGLAR+ E + A + APE + R ++ DVWS G + EL
Sbjct: 142 KVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR-FTIKSDVWSFGILLTEL 196
Score = 28.1 bits (62), Expect = 8.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 352 RVPLCINPQSAAFKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
R+P ++ + + Y+ +HRD++ N+LV N + K
Sbjct: 100 RLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCK 142
>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 2.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
LATS2 is an essential mitotic regulator responsible for
coordinating accurate cytokinesis completion and
governing the stabilization of other mitotic regulators.
It is also critical in the maintenance of proper
chromosome number, genomic stability, mitotic fidelity,
and the integrity of centrosome duplication.
Downregulation of LATS2 is associated with poor
prognosis in acute lymphoblastic leukemia and breast
cancer.
Length = 381
Score = 33.1 bits (75), Expect = 0.22
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 146 VVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRRILFQAQSPVQ-QLGLI 198
V T Y APE+L+ + Y+ D WSVG I E+L + F A +P + QL +I
Sbjct: 209 VGTPNYIAPEVLL-RKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVI 261
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 33.1 bits (76), Expect = 0.23
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E++ + KK KK K K+ KK KK K K+ KK
Sbjct: 254 ERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 32.4 bits (74), Expect = 0.31
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK 35
KK KK K KK KK KK K KK KK
Sbjct: 263 KKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 31.6 bits (72), Expect = 0.68
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 1 EKKKEKKKEKKKEKKKE--KKKKEKKKKEKKKKKEKKKKEEKK 41
E++ + KK KK K KK KK KK K KK KK
Sbjct: 254 ERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 33.1 bits (75), Expect = 0.23
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
KI DFGL + D M T Y APE+L Y AVD W +G + E++ R
Sbjct: 135 KITDFGLCKEGITDA-ATMKTFCGTPEYLAPEVLED-NDYGRAVDWWGLGVVMYEMMCGR 192
Query: 184 ILFQAQSPVQQLGLI 198
+ F Q + LI
Sbjct: 193 LPFYNQDHEKLFELI 207
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+L YLHS +I++RD+K NL+++ + +K
Sbjct: 107 ALDYLHSGKIVYRDLKLENLMLDKDGHIK 135
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 33.0 bits (75), Expect = 0.23
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVT--QYYRAPEILMGARHYSAAVDVWSV 172
++ ++ +I DFG+A + PD K E T ++ IL G Y+ DVWS
Sbjct: 140 ILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFG--RYTHQSDVWSY 197
Query: 173 GCIFAELL 180
G E++
Sbjct: 198 GVTVWEMM 205
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 33.2 bits (76), Expect = 0.23
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE---GEEEEE 57
E ++ K E++ + + +K K KE+ + E + + EE G +E+
Sbjct: 264 EGEELLKLEERTAAWRAELRKSMKPKERTAIERVPMPELDPEYRAHNRFEEVNLGLTKEQ 323
Query: 58 GEEEGRR 64
E +R
Sbjct: 324 AMTEAKR 330
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 31.2 bits (71), Expect = 0.24
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 32 KEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E E + EEEE EEE E E +
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESD 100
Score = 30.1 bits (68), Expect = 0.65
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 38 EEKKKEKKKKEEEEGEEEEEGEEEG 62
E + + +EEE+ EE EE ++
Sbjct: 78 EAAAEADEAEEEEKEEEAEEESDDD 102
Score = 30.1 bits (68), Expect = 0.65
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
E + ++ +E++K+EE E E +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDDM 103
Score = 28.5 bits (64), Expect = 2.0
Identities = 5/32 (15%), Positives = 16/32 (50%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
+ + + +EE+K+E+ ++E ++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 28.5 bits (64), Expect = 2.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 37 KEEKKKEKKKKEEEEGEEEEEGEEEG 62
+ E +++E+EE EEE ++
Sbjct: 79 AAAEADEAEEEEKEEEAEEESDDDML 104
Score = 27.4 bits (61), Expect = 5.3
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEG 58
+ +E ++E+K++E EE +++
Sbjct: 79 AAAEADEAEEEEKEEEAEEESDDDML 104
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic
region found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 30.9 bits (70), Expect = 0.24
Identities = 13/77 (16%), Positives = 39/77 (50%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
E+ +E++ +++ + K +++ + + ++ +++ +++K + + R R R
Sbjct: 14 EESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRD 73
Query: 69 RRRRRKKEREKKRSSRR 85
R R + +R + RS R
Sbjct: 74 DRDRDRYDRSRSRSRSR 90
Score = 30.1 bits (68), Expect = 0.53
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 37 KEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKP 87
EE++ E+++ +EE + E + GRR RRR RRR + R++ R RR+
Sbjct: 11 DEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRR 61
Score = 29.8 bits (67), Expect = 0.80
Identities = 13/84 (15%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E ++E+ E+ + K + + ++ ++ ++ ++++ +K ++++ + + + ++
Sbjct: 15 ESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDD 74
Query: 61 EGRRRRRRRRRRRKKEREKKRSSR 84
R R R R R + R + R R
Sbjct: 75 RDRDRYDRSRSRS-RSRSRDRRRR 97
Score = 29.4 bits (66), Expect = 0.87
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 37 KEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKP 87
+ E++++ ++ + + + G RRR RRR RRRK+ R+++R R +
Sbjct: 15 ESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRD 65
Score = 28.6 bits (64), Expect = 1.7
Identities = 10/62 (16%), Positives = 30/62 (48%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
+ ++++ +++ + + +++ + +R R+RRRRRR ++R + R
Sbjct: 15 ESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDD 74
Query: 86 KP 87
+
Sbjct: 75 RD 76
Score = 28.6 bits (64), Expect = 1.8
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E+ ++EE +E ++K E + + RRR RRR+R +K R ++R R
Sbjct: 14 EESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRA 67
Score = 27.8 bits (62), Expect = 3.1
Identities = 11/65 (16%), Positives = 27/65 (41%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
E ++ ++K + + + ++ + + RR R R R R + +R++ R
Sbjct: 20 EDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRDR 79
Query: 82 SSRRK 86
R +
Sbjct: 80 YDRSR 84
Score = 27.8 bits (62), Expect = 3.5
Identities = 10/70 (14%), Positives = 32/70 (45%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
E+++ +++ + K ++ + + ++ +++ + R R R R R ++
Sbjct: 17 EEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRD 76
Query: 77 REKKRSSRRK 86
R++ SR +
Sbjct: 77 RDRYDRSRSR 86
Score = 26.7 bits (59), Expect = 8.9
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
E+ +++E ++ +K E+ RR+R R+RRRR+++R++ R R
Sbjct: 14 EESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRD 73
Query: 87 P 87
Sbjct: 74 D 74
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 33.3 bits (76), Expect = 0.24
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 29 KKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPF 88
K+ KEKK++++++K ++ K EE EE EE EE+G + EK K F
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEE-EEKGFYY---------ELYEKVNIEANKKF 326
Query: 89 KLSEISATRP----DSTIDGYQAR 108
+ E+ A RP ST G++ R
Sbjct: 327 -IKEVIAGRPVFAHPSTNGGFRLR 349
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex
together with SecB and SecD on the surface of
Salmonella. All these proteins are secreted by the type
III secretion system. Many mucosal pathogens use type
III secretion systems for the injection of effector
proteins into target cells. SecB, SseC and SecD are
inserted into the target cell membrane. where they form
a small pore or translocon. In addition to SseC, this
family includes the bacterial secreted proteins PopB,
PepB, YopB and EspD which are thought to be directly
involved in pore formation, and type III secretion
system translocon.
Length = 303
Score = 32.8 bits (75), Expect = 0.24
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
EK+ + K ++ + + +++KK ++ +E+ KK +K +E KK
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKS 55
Score = 30.5 bits (69), Expect = 1.3
Identities = 12/41 (29%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 9 EKKKEKKKE--KKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
EK+ + K + ++ ++K++K+ ++ +E+ KK +K E+ KK
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKK 54
Score = 29.7 bits (67), Expect = 2.1
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
EK+ K K ++ ++ + +++KK E+ +E+ KK E+ EE
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEE 51
Score = 28.6 bits (64), Expect = 5.2
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K +K+ K K ++ E+ + +++KK ++ +++ KK EK +E KK
Sbjct: 11 KLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKS 55
>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase;
Provisional.
Length = 507
Score = 33.1 bits (75), Expect = 0.24
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 367 LKYLHSARILHRDIKPGNLLV 387
L+ LH I+HRDIKP NLLV
Sbjct: 322 LRKLHRIGIVHRDIKPENLLV 342
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 33.4 bits (76), Expect = 0.24
Identities = 18/80 (22%), Positives = 34/80 (42%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
+K + + K K KEK K+K+K K+++ +K+ K E + + + R
Sbjct: 202 DKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVRI 261
Query: 65 RRRRRRRRRKKEREKKRSSR 84
R + +K E+ R
Sbjct: 262 LRSYTKENKKDEKNVVSGIR 281
Score = 32.3 bits (73), Expect = 0.53
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
K ++ + K + K+K K+K K KK + K+ K+ E+ + +
Sbjct: 203 KMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFD---V 259
Query: 64 RRRRRRRRRRKKEREKKRSSRR 85
R R + KK+ + S R
Sbjct: 260 RILRSYTKENKKDEKNVVSGIR 281
>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein
Serine/Threonine Kinase, beta-adrenergic receptor
kinase. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily,
beta-adrenergic receptor kinase (beta-ARK) group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. The beta-ARK
group is composed of GRK2, GRK3, and similar proteins.
GRK2 and GRK3 are both widely expressed in many tissues,
although GRK2 is present at higher levels. They contain
an N-terminal RGS homology (RH) domain, a central
catalytic domain, and C-terminal pleckstrin homology
(PH) domain that mediates PIP2 and G protein
betagamma-subunit translocation to the membrane. GRK2
(also called beta-ARK or beta-ARK1) is important in
regulating several cardiac receptor responses. It plays
a role in cardiac development and in hypertension.
Deletion of GRK2 in mice results in embryonic lethality,
caused by hypoplasia of the ventricular myocardium. GRK2
also plays important roles in the liver (as a regulator
of portal blood pressure), in immune cells, and in the
nervous system. Altered GRK2 expression has been
reported in several disorders including major
depression, schizophrenia, bipolar disorder, and
Parkinsonism.
Length = 278
Score = 33.0 bits (75), Expect = 0.24
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 124 KICDFGLA-RVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
+I D GLA + P+ + V T Y APE+L Y ++ D +S+GC+ +LL
Sbjct: 137 RISDLGLACDFSKKKPHAS----VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL-- 190
Query: 183 RILFQAQSPVQQL 195
+ SP +Q
Sbjct: 191 ----RGHSPFRQH 199
>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain
of Ustilago maydis Rim23 (PalC), and related domains.
This family contains the Bro1-like domain of Ustilago
maydis Rim23 (also known as PalC), and related proteins.
It belongs to the BRO1_Alix_like superfamily which
includes the Bro1-like domains of mammalian Alix
(apoptosis-linked gene-2 interacting protein X),
His-Domain type N23 protein tyrosine phosphatase
(HD-PTP, also known as PTPN23), RhoA-binding proteins
Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, and related
domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23
interact with the ESCRT (Endosomal Sorting Complexes
Required for Transport) system. Rim20 and Rim23
participate in the response to the external pH via the
Rim101 pathway. Through its Bro1-like domain, Rim23
allows the interaction between the endosomal and plasma
membrane complexes. Bro1-like domains are
boomerang-shape, and part of the domain is a
tetratricopeptide repeat (TPR)-like structure.
Intermediates in the Rim101 pathway may play roles in
the pathogenesis of fungal corneal infection during
Candida albicans keratitis. This family lacks the
V-shaped (V) domain found in many members of the
BRO1_Alix_like superfamily.
Length = 413
Score = 33.1 bits (76), Expect = 0.25
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
KKE + K K K KK K+K+E++K EK EEE
Sbjct: 323 KKELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELR 365
Score = 28.9 bits (65), Expect = 5.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K K + KK ++K+E +K E+ G EEE
Sbjct: 329 LKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEEL 364
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 33.1 bits (75), Expect = 0.25
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 148 TQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
T YY APE+ R YS D+WS+G I ELL
Sbjct: 234 TPYYLAPELWERKR-YSKKADMWSLGVILYELL 265
>gnl|CDD|220745 pfam10422, LRS4, Monopolin complex subunit LRS4. Monopolin is a
protein complex, originally identified in Saccharomyces
cerevisiae, that is required for the segregation of
homologous centromeres to opposite poles of a dividing
cell during meiosis I. The orthologous complex in
Schizosaccharomyces pombe is not required for meiosis I
chromosome segregation, but is proposed to play a
similar physiological role in clamping microtubule
binding sites. In S.cerevisiae this subunit is called
LRS4, and in S. pombe it is known as Mde4.
Length = 211
Score = 32.3 bits (73), Expect = 0.26
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
+ +K++ +K +K K +K E K KKKE + +EE R + + ++ R
Sbjct: 63 QLQKQENEKLRKLNKTQKALLESKLSSKKKEVDRFKEETNSSSRSGVRTPKLGTQERQLR 122
Query: 78 EKKRSSRRKPFKL-SEISATRPDSTIDGYQARQPTRQLV 115
+S+ +K F L S I TR S+ G + + R L+
Sbjct: 123 SGAKSTEKKTFHLLSPIVGTRQPSSPSGQEKQSGLRYLL 161
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 33.0 bits (75), Expect = 0.26
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
KK K EK K + + K +E++KKK K++ +K K KKE + G+E
Sbjct: 541 YKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKE 589
Score = 33.0 bits (75), Expect = 0.32
Identities = 21/103 (20%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ ++ +K+ + K E++ +E ++E + +E+ + K K + EG + E +E
Sbjct: 279 EPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKEL 338
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLS-EISAT-RPDSTI 102
+R+ + +++ E+ +K + K + L E++A RP +++
Sbjct: 339 SSFEKRQAKLKQQIEQLEKENLAPKSWTLKGEVTAKKRPQNSL 381
Score = 30.7 bits (69), Expect = 1.6
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
KK + ++ K E + K +E++KK++K++ KK + KKE+K +E
Sbjct: 542 KKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKE 589
Score = 30.7 bits (69), Expect = 1.7
Identities = 17/91 (18%), Positives = 41/91 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E E + ++K +KK + + + +K+ +++ K ++E+EE +E+E+ ++
Sbjct: 249 EGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQD 308
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLS 91
E + + E + P +LS
Sbjct: 309 EEEPPEAAMDKVKLDEPVLEGVDLESPKELS 339
Score = 30.3 bits (68), Expect = 2.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
K ++++KK++++ KK K KKE+K KEK KK
Sbjct: 557 TDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSS 600
Score = 29.6 bits (66), Expect = 4.0
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E +++ ++ + + K++ KKK+ E + E K+ KK+ + + EEE+E ++
Sbjct: 242 EDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDD 301
Query: 61 E 61
E
Sbjct: 302 E 302
Score = 29.2 bits (65), Expect = 4.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
K +++ KKK K++ KK K KK+ K KE+ KK
Sbjct: 559 KNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSA 601
Score = 28.8 bits (64), Expect = 5.9
Identities = 16/76 (21%), Positives = 38/76 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ + ++ K+K+KKK E + + K+ +K+ + K +EE+E ++E+E ++
Sbjct: 248 EEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQ 307
Query: 61 EGRRRRRRRRRRRKKE 76
+ + K +
Sbjct: 308 DEEEPPEAAMDKVKLD 323
Score = 28.0 bits (62), Expect = 9.3
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 44 KKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
KK K E+ + E + ++ R RR+++R+RR ++ ++ + +
Sbjct: 542 KKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKER 584
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 32.9 bits (75), Expect = 0.26
Identities = 22/109 (20%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E K+K + +KE K +K KEK +++++ +E + EK+++E+ ++E EE+
Sbjct: 116 ENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMN 175
Query: 65 RRRRRR-------------------RRRKKEREKKRSSRRKPFKLSEIS 94
+R+ ++ ++ + + + + KP K + S
Sbjct: 176 KRKNKQALLDELETSTLPAAELIAQHKKNSVKLEMQVEKPKPEKPNTFS 224
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 33.0 bits (75), Expect = 0.27
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K E KKE +K ++K K E + K +++EK++K+ + ++ E +E E
Sbjct: 119 KIESKKESINKKNEKKIKNEASLQVKTQREEKEEKDFIADCWRNLYKKNEERFKEYLENF 178
Query: 63 RRRRRRRRRRRKKEREKKRSSR 84
+R++ +R+ ++ E K +S
Sbjct: 179 KRKKFKRKILKEFENAKINASE 200
Score = 32.6 bits (74), Expect = 0.46
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK--EKKKKEEEEGEEEEEGEEEG 62
EK + KK+ K+ +KK K + + K ++++KEEK + + ++ EE + E
Sbjct: 118 EKIESKKESINKKNEKKIKNEASLQVKTQREEKEEKDFIADCWRNLYKKNEERFKEYLEN 177
Query: 63 RRRRRRRRRRRKKEREKK 80
+R++ +R+ K+ K
Sbjct: 178 FKRKKFKRKILKEFENAK 195
Score = 30.7 bits (69), Expect = 1.6
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRR 71
K+ + +K E KK+ KK EKK K E + K + EE+EE + R ++
Sbjct: 111 KKTNDDLEKIESKKESINKKNEKKIKNEASLQVKT----QREEKEEKDFIADCWRNLYKK 166
Query: 72 RRKKEREKKRSSRRKPFK 89
++ +E + +RK FK
Sbjct: 167 NEERFKEYLENFKRKKFK 184
>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase beta.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) beta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKbeta is expressed
ubiquitously in many tissues.
Length = 331
Score = 32.7 bits (74), Expect = 0.28
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILM----GARHYSAAVDVWSVGCIFAEL 179
++ DFG D + V T Y +PEIL G Y D WS+G E+
Sbjct: 142 RLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEM 201
Query: 180 LGRRILFQAQSPVQQLGLITD 200
L F A+S V+ G I +
Sbjct: 202 LYGETPFYAESLVETYGKIMN 222
Score = 30.0 bits (67), Expect = 2.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 370 LHSARILHRDIKPGNLLVNSN 390
+H +HRDIKP N+L++ N
Sbjct: 118 IHQLHYVHRDIKPDNVLLDMN 138
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 32.6 bits (74), Expect = 0.28
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 354 PLCINPQSAAFKSLKYLHSARILHRDIKPGNLLVNSN 390
L N +L+Y+H I H DIKP N++V+ N
Sbjct: 126 KLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGN 162
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM).
This family consists of several Plasmodium falciparum
SPAM (secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the
alanine heptad-repeat domain. Heptad repeats in which
the a and d position contain hydrophobic residues
generate amphipathic alpha-helices which give rise to
helical bundles or coiled-coil structures in proteins.
SPAM is an example of a P. falciparum antigen in which
a repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 32.1 bits (73), Expect = 0.28
Identities = 15/50 (30%), Positives = 37/50 (74%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
K+ E K++K+++ +++E++ ++E ++ E+ + E++ E+EE EEE+E +
Sbjct: 38 KENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEED 87
Score = 31.0 bits (70), Expect = 0.69
Identities = 10/57 (17%), Positives = 37/57 (64%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
++K+E +E+++E ++E ++ E + E++ ++++++EE +++ ++ E + +
Sbjct: 45 DEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNIND 101
Score = 30.2 bits (68), Expect = 1.2
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+ ++EKK E E K KE K+ + K+EK+++ +++EEE+ EE EE E+
Sbjct: 11 KKPEEEKKDENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDI 68
Score = 29.8 bits (67), Expect = 1.5
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 6 KKKEKKKEK------KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
K +E+KK++ K KE KE + K++K+++++++E++ +EE E E+ E E
Sbjct: 12 KPEEEKKDENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDE 71
Query: 60 EE 61
EE
Sbjct: 72 EE 73
Score = 28.3 bits (63), Expect = 5.5
Identities = 11/62 (17%), Positives = 41/62 (66%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
KE + K ++++ +++++E+ ++E ++ ++ + +EE ++++++EE+E + + + E +
Sbjct: 38 KENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKK 97
Query: 64 RR 65
Sbjct: 98 NI 99
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 32.4 bits (74), Expect = 0.28
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK----------KKEEKKKEKKKKEEEEGEE 54
K +E++ + +E+ + +KKKE+ +K +K +K+EK K + +KE E+
Sbjct: 115 RKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQFLA 174
Query: 55 EEEGEEEG 62
E +
Sbjct: 175 ERDDFSSP 182
Score = 28.9 bits (65), Expect = 3.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 2 KKKEKKKEKKKEKKKEKKKKE--------KKKKEKKKKKEKKKKEEKKKEKKKKE 48
+++++ EKKKE+ EK +KE +KKEK K + +K+ E+ E+
Sbjct: 126 EERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQFLAERDDFS 180
Score = 28.6 bits (64), Expect = 5.6
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 3 KKEKKKE-KKKEKKKEKKKKEKKKKEKK----------KKKEKKKKEEKKKEKKKKEEEE 51
++ + +++++ EKKK+E +K +K +KKEK K + +K+ ++ E +
Sbjct: 118 RERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQFLAERD 177
Query: 52 GEE 54
Sbjct: 178 DFS 180
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 31.1 bits (71), Expect = 0.29
Identities = 12/46 (26%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 1 EKKKEKKKEKKKEKKKE-KKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
+ K E+K+++ E+++E K+ + K +K +KK++K E + + ++
Sbjct: 69 QAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 28.8 bits (65), Expect = 1.9
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
+++ K E+K++E ++E++ K+ + K + K EKK+++ E + E
Sbjct: 66 AERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAE 111
Score = 28.4 bits (64), Expect = 3.1
Identities = 11/49 (22%), Positives = 29/49 (59%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+++ K E+K+++ + +++ ++ + K K EKK+ K + + E +E
Sbjct: 66 AERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
>gnl|CDD|222616 pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria,
eukaryotes and viruses, and is approximately 180 amino
acids in length. It contains a conserved RRXRR motif. It
is often found in association with pfam01844.
Length = 174
Score = 32.2 bits (74), Expect = 0.29
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 61 EGRRRRRRRRRRRKKEREKKR-SSRRKP 87
RRR RRRRR RK K R +R++P
Sbjct: 91 LSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 33.1 bits (74), Expect = 0.29
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKK---KEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+K KK EKKK +K+ K E ++K KK KE ++ E + K++ +EEE + + E E
Sbjct: 68 EKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQE 127
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDST 101
+ + ++ +K + EKK+ K K + T+ ST
Sbjct: 128 RIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKAST 169
Score = 31.6 bits (70), Expect = 0.83
Identities = 22/81 (27%), Positives = 47/81 (58%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
++ ++ ++ KK +KKK +K+ K + E+K +K EK+ + E ++ +EE ++
Sbjct: 62 EQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQ 121
Query: 66 RRRRRRRRKKEREKKRSSRRK 86
+ + R +KE+EKK + +K
Sbjct: 122 WKAEQERIQKEQEKKEADLKK 142
Score = 29.3 bits (64), Expect = 4.5
Identities = 19/83 (22%), Positives = 50/83 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E +++ +K EK+ + + E KK+ ++++ K+ K E+++ +K++E++E + ++ E
Sbjct: 87 EAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAE 146
Query: 61 EGRRRRRRRRRRRKKEREKKRSS 83
+ + + + + K E+ KK S+
Sbjct: 147 KKKEKAVKAEKAEKAEKTKKAST 169
Score = 28.5 bits (62), Expect = 7.2
Identities = 17/83 (20%), Positives = 50/83 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + E+K KK +KE ++ E + K++ ++E+ K+ + ++E+ +KE+E+ E + + +
Sbjct: 85 DHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQ 144
Query: 61 EGRRRRRRRRRRRKKEREKKRSS 83
+++ + + + ++ EK + +
Sbjct: 145 AEKKKEKAVKAEKAEKAEKTKKA 167
Score = 28.5 bits (62), Expect = 7.5
Identities = 20/73 (27%), Positives = 41/73 (56%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
+++KE + E+ ++ +K KK +KKK +K+ K + E++ ++ E+E RR
Sbjct: 49 DQRKEAFASLELTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAE 108
Query: 69 RRRRRKKEREKKR 81
++R +E E K+
Sbjct: 109 AKKRAAQEEEHKQ 121
Score = 28.1 bits (61), Expect = 8.7
Identities = 20/90 (22%), Positives = 49/90 (54%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+K+ K + ++K KK EK+ + + + +K+ +E++ ++ K E+E ++E+E +E
Sbjct: 79 QKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEA 138
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLS 91
++ + +++ K + +K K K S
Sbjct: 139 DLKKLQAEKKKEKAVKAEKAEKAEKTKKAS 168
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 33.0 bits (76), Expect = 0.29
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 29 KKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ K++EE E K +EE EEEEE +
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.8 bits (65), Expect = 5.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 28 KKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+++ K+++E + K +EE EEEE
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEES 337
Score = 28.4 bits (64), Expect = 8.1
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
++ K+++E + K +E+ +EEEE +
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 33.0 bits (75), Expect = 0.29
Identities = 18/72 (25%), Positives = 44/72 (61%), Gaps = 12/72 (16%)
Query: 2 KKKEKKKEKKKEKKKEK------------KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
K++E++++ + + ++ ++E+ ++E++++EE+++E+++ EE
Sbjct: 405 KRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEE 464
Query: 50 EEGEEEEEGEEE 61
EEGE+EEE EE
Sbjct: 465 EEGEDEEEEEEV 476
Score = 29.5 bits (66), Expect = 3.3
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K++ +E+++ K++E++++ + K E ++ EEE EEE EEE
Sbjct: 394 KQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEE 452
>gnl|CDD|109943 pfam00906, Hepatitis_core, Hepatitis core antigen. The core
antigen of hepatitis viruses possesses a carboxyl
terminus rich in arginine. On this basis it was
predicted that the core antigen would bind DNA. There is
some experimental evidence to support this.
Length = 182
Score = 32.1 bits (73), Expect = 0.30
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKP 87
RRR RRRR + ++RS
Sbjct: 156 RRRTPSPRRRRSQSPRRRRSQSPSS 180
>gnl|CDD|135898 PRK06397, PRK06397, V-type ATP synthase subunit H; Validated.
Length = 111
Score = 31.1 bits (70), Expect = 0.30
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRS 82
K+K+E K+ K E++ E K+ + + E+ ++ EEE +KE EKK
Sbjct: 16 KEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKAV 75
Query: 83 S 83
Sbjct: 76 E 76
Score = 27.6 bits (61), Expect = 5.4
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRR 72
++K+E KE + +++ E K+ + K +EK KK EEE R+ ++
Sbjct: 16 KEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKAV 75
Query: 73 RKKEREKKRSSRRKPFKLSE 92
+ K+ +S K K+SE
Sbjct: 76 EIINKAKQEASLIK-LKISE 94
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 33.0 bits (75), Expect = 0.30
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K +++++ K K KKE++K+++ +KE + K E+KK K + +E E +E
Sbjct: 58 KGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDES 113
Score = 29.6 bits (66), Expect = 3.5
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
+K +++ + K + KKE++K+K+ +K+ E K E+KK + E +E
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVA 116
Query: 71 RRRKKEREK 79
++ER+K
Sbjct: 117 NLSEEERKK 125
Score = 28.8 bits (64), Expect = 5.2
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K +++++ K K KK+ +K+K+ +K+ E K +E+K K E +E E +E
Sbjct: 58 KGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDES 113
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 33.0 bits (76), Expect = 0.30
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+EKKK KK EK+ + + +KK+KE + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 32.3 bits (74), Expect = 0.50
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 8 KEKKKEKKKEKKKKEKKKKE-KKKKKEKKKKEEKKKE 43
+EKKK KK +K+ + KK+KE + EK++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 32.3 bits (74), Expect = 0.50
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 4 KEKKKEKKKEKKKEKKKKE---KKKKEKKKKKEKKKK 37
+EKKK KK +K+ + + KK+KE + EK++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 31.9 bits (73), Expect = 0.80
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
+KK+ KK+ +K+ + + KK K+ + +K++
Sbjct: 85 EKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 30.3 bits (69), Expect = 2.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+KKK KK EK+ + + ++K+KE + E++
Sbjct: 85 EKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQ 118
Score = 29.2 bits (66), Expect = 5.0
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK 36
EKKK KK +K+ + +K+K+ + ++++
Sbjct: 85 EKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more
internally with limited reactivity in the C-terminal
domains, while P2 proteins seem to be more externally
located and are more likely to interact with other
cellular components. In lower eukaryotes, P1 and P2 are
further subdivided into P1A, P1B, P2A, and P2B, which
form P1A/P2B and P1B/P2A heterodimers. Some plant
species have a third P-protein, called P3, which is not
homologous to P1 and P2. In humans, P1 and P2 are
strongly autoimmunogenic. They play a significant role
in the etiology and pathogenesis of systemic lupus
erythema (SLE). In addition, the ribosome-inactivating
protein trichosanthin (TCS) interacts with human P0,
P1, and P2, with its primary binding site located in
the C-terminal region of P2. TCS inactivates the
ribosome by depurinating a specific adenine in the
sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 30.8 bits (70), Expect = 0.30
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 36 KKEEKKKEKKKKEEEEGEEEEEG 58
E KKE+KK+EEEE +++ G
Sbjct: 77 AAAEAKKEEKKEEEEEESDDDMG 99
Score = 28.1 bits (63), Expect = 3.2
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 31 KKEKKKKEEKKKEKKKKEEEE 51
+ KKEEKK+E++++ +++
Sbjct: 77 AAAEAKKEEKKEEEEEESDDD 97
Score = 28.1 bits (63), Expect = 3.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 32 KEKKKKEEKKKEKKKKEEEEGEEE 55
E KK+EKK++EEEE +++
Sbjct: 74 AAAAAAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 33.1 bits (75), Expect = 0.30
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK-KKEEKKKEKKKKEEEEGEEEEEGE 59
E+K K E K K+EKK KK +K +KE + + + ++ E+ EE E E
Sbjct: 343 EEKARKYWEANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDAEDIEEAIEEE 398
Score = 30.0 bits (67), Expect = 2.7
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
E+K K E K K+++K KK + +KE+ + + E + E+ E +
Sbjct: 343 EEKARKYWEANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDAEDIEEAIEEEK 399
Score = 29.6 bits (66), Expect = 3.3
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEK-KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
EK ++ + K K+EKK KK +K +KE+ + + + ++ + EE EE+ + E
Sbjct: 344 EKARKYWEANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDAEDIEEAIEEEKNQSE 403
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional.
Length = 194
Score = 32.1 bits (73), Expect = 0.31
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR--- 67
K+ K + + E + ++ ++ KEE + E E+ EE E +E R
Sbjct: 4 KEVGKDKAENSEARNSGSSAEEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEF 63
Query: 68 ---RRRRRRKKEREKK 80
R+R R+ E +K
Sbjct: 64 DNFRKRTAREMEENRK 79
Score = 30.6 bits (69), Expect = 0.86
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
KE K + + E + ++ E+ KE+ + + E E+ EE + + R +
Sbjct: 4 KEVGKDKAENSEARNSGSSAEEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEF 63
Query: 76 EREKKRSSRRK 86
+ +KR++R
Sbjct: 64 DNFRKRTAREM 74
>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region. Remorins are
plant-specific plasma membrane-associated proteins. In
tobacco remorin co-purifies with lipid rafts. Most
remorins have a variable, proline-rich C-half and a
more conserved N-half that is predicted to form coiled
coils. Consistent with this, circular dichroism studies
have demonstrated that much of the protein is
alpha-helical. Remorins exist in plasma membrane
preparations as oligomeric structures and form
filaments in vitro. The proteins can bind polyanions
including the extracellular matrix component
oligogalacturonic acid (OGA). In vitro, remorin in
plasma membrane preparations is phosphorylated
(principally on threonine residues) in the presence of
OGA and thus co-purifies with a protein kinases(s). The
biological functions of remorins are unknown but roles
as components of the membrane/cytoskeleton are
possible.
Length = 112
Score = 31.1 bits (71), Expect = 0.31
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
++ EK K K +++E K + + K+K K + + KK E+K EKKK E E
Sbjct: 14 EEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAEAAE 63
Score = 30.0 bits (68), Expect = 0.77
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 1 EKKKEKKKE---KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E KK+ K E KK E+K EKKK E +K K K KK E+K + E + GEEE +
Sbjct: 36 ENKKKAKAEAELKKIERKLEKKKAEAAEKLKNKLAAAHKKAEEK--RATAEAKRGEEEAK 93
Query: 58 GEEEGRRRRR 67
EE+ + R
Sbjct: 94 AEEKAAKIRA 103
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 31.5 bits (72), Expect = 0.31
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 44 KKKKEEEEGEEEEEGEE-EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSE 92
K ++E+ E + E + R RR++RR +KE+E+ R + K+ +
Sbjct: 53 DGKYDDEDEEADRIYESIDERMDERRKKRREQKEKEEIEKYREENPKIQQ 102
Score = 28.0 bits (63), Expect = 4.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 41 KKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKP 87
K E+EE + E +E RR++RR +K++ E ++ P
Sbjct: 52 SDGKYDDEDEEADRIYESIDERMDERRKKRREQKEKEEIEKYREENP 98
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 32.5 bits (74), Expect = 0.32
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
E K+ KK +K + K K K KK K+K + K + K +
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 31.8 bits (72), Expect = 0.63
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
KE KK KK + K K K KK KK+ K + +
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 31.4 bits (71), Expect = 0.72
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
K K+ + K + K KK K+K + K K + K ++
Sbjct: 149 KPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQD 195
Score = 29.5 bits (66), Expect = 3.0
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
++ K+ KK + K K K +K KK+ + K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPR 186
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 30.0 bits (68), Expect = 0.32
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE--KKKEKKKKEEEEGEEEE 56
K+ K K KKK+ K ++EK++++E+ +K E K++EK K EE E E
Sbjct: 11 KDMLNADLLAKLKAKKKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 29.2 bits (66), Expect = 0.54
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+K+ + K+ + K K KKKE K +EEK++E+++ + E +E E
Sbjct: 1 KQKKDEPVTLKDMLNADLLAKLKAKKKELKAEEEKREEEEEARKREERKERE 52
Score = 28.8 bits (65), Expect = 0.98
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK 36
K K KKKE K E++K ++++E +K+E++K++EK K
Sbjct: 20 AKLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 32.3 bits (74), Expect = 0.32
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
++++KK EK K+K KEKK + K+ K K KK +K + KKKE
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKE 245
Score = 31.5 bits (72), Expect = 0.69
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK-KEEKKKEKKKKEE 49
+E+KK+ +K KKK K+KK K KK K K K+ KK KK+E
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKE 245
Score = 30.8 bits (70), Expect = 1.1
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK--------KKKEKKKKEEKKKEKKK 46
++K+K ++ KK+ K++K K KK K KK KK+E K+KKK
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKK 252
Score = 30.0 bits (68), Expect = 2.2
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEK-------------KKKKEKKKKEEKKKEKKKK 47
E+KK+ +K KKK K+K+ K KK K KKKE K+++K K+ KK+
Sbjct: 200 ERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKKR 259
Query: 48 EEEEGEEEEEGEEE 61
++ + + +
Sbjct: 260 NNKKNYSDIKDKYA 273
Score = 29.2 bits (66), Expect = 3.1
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 1 EKKKEKKKEKKKEKKKEKKKK-----EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
EKK K KK K K KK + KKKE K+K+K KK +K+ KK + + +
Sbjct: 214 EKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKKRNNKKNYSDIKDKYA 273
Query: 56 EE 57
+E
Sbjct: 274 KE 275
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 32.8 bits (75), Expect = 0.32
Identities = 12/75 (16%), Positives = 33/75 (44%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
+K+ K + K+ +++K+ KK+ K ++ K E + +E + +
Sbjct: 343 ARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFI 402
Query: 66 RRRRRRRRKKEREKK 80
+ +R + ++K+
Sbjct: 403 KLEELKRLENGKQKR 417
Score = 32.8 bits (75), Expect = 0.35
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
K+KE KK+ ++K+ K + KK ++E+ K E K EE + E + +
Sbjct: 358 RKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRLENGKQK 416
Score = 31.6 bits (72), Expect = 0.69
Identities = 16/75 (21%), Positives = 35/75 (46%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
++K K + K+ +K+KE +K+ K+K+ K + ++ +EE+ E
Sbjct: 343 ARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFI 402
Query: 63 RRRRRRRRRRRKKER 77
+ +R K++R
Sbjct: 403 KLEELKRLENGKQKR 417
Score = 31.6 bits (72), Expect = 0.80
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK--EEEEGEEEEEGEEEGRRRR 66
+KK K + KE +K+++ +K+ K+KE K E + + E+
Sbjct: 343 ARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFI 402
Query: 67 RRRRRRRKKEREKKR 81
+ +R + ++KR
Sbjct: 403 KLEELKRLENGKQKR 417
Score = 29.7 bits (67), Expect = 2.7
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK--KEEKKKEKKKKEEEEGEEEEEG 58
+KK K + ++ +++K+ KK+ K K+ K + KK +EE + E
Sbjct: 343 ARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFI 402
Query: 59 EEEGRRRRRRRRRRR 73
+ E +R +++R
Sbjct: 403 KLEELKRLENGKQKR 417
Score = 29.3 bits (66), Expect = 3.9
Identities = 13/75 (17%), Positives = 33/75 (44%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
+KK K + ++ +K K+ KK+ K++E + E ++ +EE +
Sbjct: 343 ARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFI 402
Query: 65 RRRRRRRRRKKEREK 79
+ +R ++++
Sbjct: 403 KLEELKRLENGKQKR 417
>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein
Serine/Threonine Kinase, STK25 or Yeast
Sps1/Ste20-related kinase 1. Serine/threonine kinases
(STKs), STK25 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The STK25 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. STK25 is also called Ste20/oxidant stress
response kinase 1 (SOK1) or yeast Sps1/Ste20-related
kinase 1 (YSK1). STK25 is localized in the Golgi
apparatus through its interaction with the Golgi matrix
protein GM130. It may play a role in the regulation of
cell migration and polarization. STK25 binds and
phosphorylates CCM3 (cerebral cavernous malformation 3),
also called PCD10 (programmed cell death 10), and may
play a role in apoptosis. Human STK25 is a candidate
gene responsible for pseudopseudohypoparathyroidism
(PPHP), a disease that shares features with the Albright
hereditary osteodystrophy (AHO) phenotype.
Length = 277
Score = 32.3 bits (73), Expect = 0.33
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVN 388
K L YLHS R +HRDIK N+L++
Sbjct: 111 LKGLDYLHSERKIHRDIKAANVLLS 135
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 32.9 bits (75), Expect = 0.33
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 24/116 (20%)
Query: 8 KEKKKEKKKEKKKKEKKKK---------------EKKKKKEKKKK----EEKKKEKKKKE 48
++ E KK K KK + KK E KK +E++ +E +++++ E
Sbjct: 226 QDATPEGKKGKNKKGRGKKHNAFSRRGLSDEEYDEYKKIREERGGKYSIQEYLEDRERYE 285
Query: 49 EE--EGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKL---SEISATRPD 99
EE E + E E + R+R ++ K+R R L S+I +P
Sbjct: 286 EELAERQATEADFCEEEEAKIRQRIFGLRKTRKQRKEERAKLGLVTGSDIRKRKPI 341
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 32.1 bits (73), Expect = 0.33
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
KE+ +K ++E + KK+ K+ KE+ ++++ E +KE + + + + E+
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDKY 62
Query: 64 RRRRRR----RRRRKKER 77
R + + R KER
Sbjct: 63 LRSQAEIQNMQNRYAKER 80
>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C eta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), eta isoform, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta
is predominantly expressed in squamous epithelia, where
it plays a crucial role in the signaling of cell-type
specific differentiation. It is also expressed in pro-B
cells and early-stage thymocytes, and acts as a key
regulator in early B-cell development. PKC-eta increases
glioblastoma multiforme (GBM) proliferation and
resistance to radiation, and is being developed as a
therapeutic target for the management of GBM.
Length = 320
Score = 32.6 bits (74), Expect = 0.33
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFG+ + E K + T Y APEIL Y +VD W++G + E+L
Sbjct: 136 KLADFGMCK-EGIFNGKTTSTFCGTPDYIAPEILQ-EMLYGPSVDWWAMGVLLYEMLCGH 193
Query: 184 ILFQAQS 190
F+A++
Sbjct: 194 APFEAEN 200
>gnl|CDD|221893 pfam13010, pRN1_helical, Primase helical domain. This alpha
helical domain is found in a set of bacterial plasmid
replication proteins. The domain is found to the
C-terminus of the primase/polymerase domain. Mutants of
this domain are defective in template binding,
dinucleotide formation and conformation change prior to
DNA extension.
Length = 135
Score = 31.3 bits (71), Expect = 0.33
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKK--EKKKKEEKKKEKKKKEEEEGEEEE 56
KK+E+ E+ EK K+E K ++ K K E ++E KK KK EE + +++
Sbjct: 2 GKKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKKA 55
Score = 27.1 bits (60), Expect = 9.2
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKK------EEKKKEKKKKEEEEGEEEEE 57
E KKE++ ++ EK K+E K K K EE K+ KK EE E+++
Sbjct: 1 EGKKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKKA 55
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like
receptor 4 signaling. It is also a specific regulator of
the proinflammatory cytokines IL-6 and GM-CSF in some
immune cells. MEKK3 also regulates calcineurin, which
plays a critical role in T cell activation, apoptosis,
skeletal myocyte differentiation, and cardiac
hypertrophy.
Length = 266
Score = 32.3 bits (73), Expect = 0.34
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 148 TQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
T Y+ +PE++ G Y DVWS+GC E+L +
Sbjct: 172 TPYWMSPEVISG-EGYGRKADVWSLGCTVVEMLTEK 206
Score = 30.0 bits (67), Expect = 2.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNS 389
+ + YLHS I+HRDIK N+L +S
Sbjct: 116 LEGMSYLHSNMIVHRDIKGANILRDS 141
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 31.9 bits (73), Expect = 0.34
Identities = 12/45 (26%), Positives = 30/45 (66%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+K EK ++++KE +K+ ++ ++ K KK E++++E + ++E
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKE 84
Score = 31.1 bits (71), Expect = 0.65
Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKK-KEKKKKEKKKKKEKKKKEEKKKEKK 45
+K EK ++++KE +K ++ ++ K KK EK+++E + +K+
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKE 84
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 31.6 bits (72), Expect = 0.34
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
K+ +E ++ + K ++ ++ KE K K K ++ + E+
Sbjct: 108 KKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
Score = 30.5 bits (69), Expect = 0.89
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
++ + + +E E K+ K K K KK +K+K
Sbjct: 117 PNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
Score = 30.5 bits (69), Expect = 0.93
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E K + + +K E+ E+ + K +E E K+ +
Sbjct: 96 EIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLA 146
Score = 30.1 bits (68), Expect = 1.2
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 1 EKKKEKKKEKKKEKKKEK-------KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
E + + ++ ++ KK E+ E K +E E K+ K + + +
Sbjct: 94 ENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKK 153
Query: 54 EEEE 57
++E
Sbjct: 154 HDKE 157
Score = 27.8 bits (62), Expect = 6.7
Identities = 7/57 (12%), Positives = 18/57 (31%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
K + + KK E+ +E + + +E E + + + +
Sbjct: 97 IKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKK 153
Score = 27.4 bits (61), Expect = 8.7
Identities = 9/53 (16%), Positives = 20/53 (37%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E + + ++ + KK E+ +E + K +E E +E +
Sbjct: 94 ENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLA 146
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lyn is a member of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Lyn is
expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules.
Length = 261
Score = 32.3 bits (73), Expect = 0.34
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPE-ILMGARHYSAAVDVWSVGCIFAELL 180
KI DFGLARV E + A + APE I G+ ++ DVWS G + E++
Sbjct: 143 KIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGS--FTIKSDVWSFGILLYEIV 198
>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 2. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more
restricted distribution that SGK1 and is most abundantly
expressed in epithelial tissues including kidney, liver,
pancreas, and the choroid plexus of the brain. In vitro
cellular assays show that SGK2 can stimulate the
activity of ion channels, the glutamate transporter
EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Length = 321
Score = 32.6 bits (74), Expect = 0.35
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNS 389
++ YLHS I++RD+KP N+L++S
Sbjct: 108 AIGYLHSLNIIYRDLKPENILLDS 131
Score = 30.7 bits (69), Expect = 1.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 125 ICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
+ DFGL + E +P + + T Y APE+L Y VD W +G + E+L
Sbjct: 137 LTDFGLCK-EGVEPEETTSTFCGTPEYLAPEVLR-KEPYDRTVDWWCLGAVLYEML 190
>gnl|CDD|224279 COG1360, MotB, Flagellar motor protein [Cell motility and
secretion].
Length = 244
Score = 32.4 bits (74), Expect = 0.35
Identities = 13/59 (22%), Positives = 30/59 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+ ++ K+++ E+ + EKK+ +K K+ E K K+ + + + ++ EEG
Sbjct: 68 KSMQQVKEKELAEELNVGEAIEKKELSEKLGDLAKELESKPKDIELEHQLGVDDVEEGL 126
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 32.6 bits (75), Expect = 0.36
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
KK KK KK + +K+E+ +K + K++ ++ E+ +E+ K+ +EE E
Sbjct: 354 KKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEELEEELKELKEELES 406
Score = 29.9 bits (68), Expect = 2.7
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
+K + + +K+E+ +K + KEK ++ ++ +EE K+ K++ E E
Sbjct: 361 PKKARGQLPPEKREQLEKLLETKEKLSEELEELEEELKELKEELESLYSE 410
Score = 29.5 bits (67), Expect = 2.9
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK--KKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
E ++E +K KK KK KK + + EK++ +K + KE+ +E ++ EEE E +EE
Sbjct: 345 ELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEELEEELKELKEEL 404
Query: 59 EE 60
E
Sbjct: 405 ES 406
Score = 29.1 bits (66), Expect = 3.8
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKK-KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
E+ KE ++E +K KK KK K+ + + +K+E+ +K + KEK +E EE EEE +
Sbjct: 341 EELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEELEEELKEL 400
Query: 60 EE 61
+E
Sbjct: 401 KE 402
Score = 28.8 bits (65), Expect = 5.2
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K++ K+ E++ ++ +E+ +K KK +K KK + + +K+E+ +K E E+ E
Sbjct: 333 KEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSE 388
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 32.5 bits (74), Expect = 0.36
Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
++ +EK ++E++++K++ K K E+++K +EE ++ E E +R RR
Sbjct: 6 RRAREKLEREQRERKQRAKL---KLERERKAKEEAAKQREAIEAAQRSRR 52
Score = 29.1 bits (65), Expect = 4.9
Identities = 13/40 (32%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 10 KKKEKKKEKKKKEKKKKEKKK-KKEKKKKEEKKKEKKKKE 48
++ +K E++++E+K++ K K ++E+K KEE K+++ E
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIE 45
Score = 28.7 bits (64), Expect = 6.7
Identities = 10/39 (25%), Positives = 29/39 (74%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE 39
E ++ ++K ++++++++++ K K ++E+K K+E K+ E
Sbjct: 4 ELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQRE 42
Score = 28.7 bits (64), Expect = 6.8
Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 8/51 (15%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRR------RRRRR 71
E ++ +EK ++E+ +E+K++ + + E E + +EE ++R +R RR
Sbjct: 4 ELRRAREKLEREQ--RERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRR 52
>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional.
Length = 159
Score = 31.6 bits (72), Expect = 0.36
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK--EKKKKEEEEGEEE--EEG 58
++ + + K EK E +KK ++ K K +++ K KEE KK E+ K + E EE +E
Sbjct: 36 SRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEA 95
Query: 59 EEEGRRRRRRRRRRRKKEREK 79
EE R + ++E+EK
Sbjct: 96 HEEADLIIERAKLEAQREKEK 116
Score = 28.9 bits (65), Expect = 2.7
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRR 66
+K + +KK + K + +++ K K+E KK E+ K K + EE +E E + R
Sbjct: 46 EKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIER 105
Query: 67 RRRRRRRKKEREK 79
+ +R+KE+ +
Sbjct: 106 AKLEAQREKEKAE 118
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 31.7 bits (72), Expect = 0.37
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEE 39
EKKK+ K K+ K K KK + +KK +E
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 31.3 bits (71), Expect = 0.62
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK 37
++K +K+KK K KK K K KK E KKK
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKK 112
Score = 31.0 bits (70), Expect = 0.77
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 25 KKEKKKKKEKKKKEEKKKEKKKKEEE 50
KK+K K K+ K K +K ++KKK E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 30.6 bits (69), Expect = 0.88
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEE 51
K+KK K +K K + KK E KKK E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 30.2 bits (68), Expect = 1.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKE 33
KKK K K+ K K KK ++KKK +E
Sbjct: 92 KKKGKSKKNKLKGKKDEDKKKARE 115
Score = 29.8 bits (67), Expect = 1.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEK 44
K+KK K KK K + KK E+KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.8 bits (67), Expect = 1.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKK 32
EKKK+ K +K K + KK E KKK
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKA 113
Score = 29.8 bits (67), Expect = 2.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEK 34
KK+K K KK K K KK++ KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.4 bits (66), Expect = 2.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKE 27
KK+K K KK + K +K + +KK +E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 29.0 bits (65), Expect = 3.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKK 29
EKKK+ K +K K K KK++ KK+ +
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.0 bits (65), Expect = 3.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKE 43
EKKKK K KK K K K+ + K++ ++
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 28.6 bits (64), Expect = 4.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
++K +KK+K K +K K K KK +++KK
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKA 113
Score = 28.3 bits (63), Expect = 5.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE 27
EKKK+ K +K K K K+ + K+K ++
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 27.9 bits (62), Expect = 8.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK 35
++K +K+KK + KK + K K+ + KK+ +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.5 bits (61), Expect = 9.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 32 KEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+KK K +K K K KK+E++ + E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 32.7 bits (74), Expect = 0.38
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 25 KKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KKE +K K+ EE+ E++ +EE+ +++++ +E+
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDED 69
Score = 31.1 bits (70), Expect = 0.97
Identities = 9/44 (20%), Positives = 28/44 (63%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KK+ +K K+ ++E ++E+ +E +++E E++++ +++
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDD 76
Score = 30.0 bits (67), Expect = 2.7
Identities = 9/53 (16%), Positives = 30/53 (56%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
KKE K ++ ++E ++E +++ +++ ++ +++E +E+E+ +
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 29.6 bits (66), Expect = 3.0
Identities = 9/47 (19%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KKE + K KE +++ +++ ++++ + +E+E +++++ +E+
Sbjct: 33 KKENAIR-KLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDED 78
Score = 28.8 bits (64), Expect = 5.3
Identities = 10/49 (20%), Positives = 29/49 (59%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
KK+ +K K+ E++ +E+ EE + ++E++ +++++ ++E
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDED 81
Score = 28.8 bits (64), Expect = 5.5
Identities = 8/51 (15%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KKE +K ++ ++E ++++ ++++ + + +++++ +++E+ E+E
Sbjct: 33 KKENAI-RKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
They may also function as cargo carriers during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. Class IIIB
myosin is expressed highly in retina. It is also present
in the brain and testis. The human class IIIB myosin
gene maps to a region that overlaps the locus for
Bardet-Biedl syndrome, which is characterized by
dysmorphic extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 32.3 bits (73), Expect = 0.38
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 362 AAFKSLKYLHSARILHRDIKPGNLLVNS 389
A L++LH+ RI+HRD+K N+L+ +
Sbjct: 136 GALLGLQHLHNNRIIHRDVKGNNILLTT 163
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 32.1 bits (73), Expect = 0.38
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
KI DFGL+R + D KA + + + PE + R Y+ DVW+ G + E+
Sbjct: 170 KIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNR-YTTESDVWAYGVVLWEI 225
Score = 30.2 bits (68), Expect = 1.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 355 LCINPQSAAFKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
LCI Q AA + YL + +HRD+ N LV N ++K
Sbjct: 133 LCIAKQVAA--GMAYLSERKFVHRDLATRNCLVGENMVVK 170
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 32.8 bits (75), Expect = 0.38
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKK-EKKKKEEKKKEKKKKEEEE 51
E+ E+ E++ ++ K KK KKK +E K K+EE E
Sbjct: 844 EEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERE 895
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 32.7 bits (74), Expect = 0.39
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE-EGEEEGRR 64
+K E++ + K K +++E + +E ++ EE KKE +K EG+EE+ + +EE +
Sbjct: 224 EKLEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKF 283
Query: 65 RRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
+ R + S+ PFK E
Sbjct: 284 IEHDVKDRNIAGGFSEFFSKLNPFKKDEK 312
>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
aPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. aPKCs only require
phosphatidylserine (PS) for activation. They contain a
C2-like region, instead of a calcium-binding (C2) region
found in classical PKCs, in their regulatory domain.
There are two aPKC isoforms, zeta and iota. aPKCs are
involved in many cellular functions including
proliferation, migration, apoptosis, polarity
maintenance and cytoskeletal regulation. They also play
a critical role in the regulation of glucose metabolism
and in the pathogenesis of type 2 diabetes.
Length = 329
Score = 32.5 bits (74), Expect = 0.39
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ D+G+ + E P + T Y APEIL G Y +VD W++G + E++ R
Sbjct: 136 KLTDYGMCK-EGIRPGDTTSTFCGTPNYIAPEILRG-EDYGFSVDWWALGVLMFEMMAGR 193
Query: 184 ILF 186
F
Sbjct: 194 SPF 196
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 32.0 bits (73), Expect = 0.40
Identities = 13/29 (44%), Positives = 24/29 (82%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
EK KKE+ ++KE++++E+ +E+K +EEE
Sbjct: 152 EKIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 31.6 bits (72), Expect = 0.58
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKE 43
EK KKE+ ++++++++EK +EEK +E
Sbjct: 152 EKIKKERAEEKEREEEEKAAEEEKARE 178
Score = 30.1 bits (68), Expect = 1.9
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 33 EKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
EK KKE +++++++EE+ EEE+ EEE
Sbjct: 152 EKIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 29.3 bits (66), Expect = 3.3
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 29 KKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
K KKE+ +++E+++E+K EEE+ EEE
Sbjct: 153 KIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 28.2 bits (63), Expect = 7.3
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEK 40
KKE+ +++++++E+K +E+K +EE+
Sbjct: 155 KKERAEEKEREEEEKAAEEEKAREEE 180
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that
may be functionally important. TIP is involved in
enamel assembly by interacting with one of the major
proteins responsible for biomineralisation of enamel -
tuftelin.
Length = 106
Score = 30.8 bits (70), Expect = 0.40
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 52 GEEEEEGEEEGRRRRRRRRRRRKKEREK 79
+++++ E E RR R RRR ++KK+ K
Sbjct: 40 ADDDDDDEGERRRGRGRRRSKKKKDYSK 67
>gnl|CDD|214787 smart00721, BAR, BAR domain.
Length = 239
Score = 32.0 bits (73), Expect = 0.40
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 2 KKKEKKKEKKK---EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
KK KK E+K + + K KK KK KEKKK ++ K EE+ ++ K++ EE + E
Sbjct: 137 KKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVE 195
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR
(FCH and Bin/Amphiphysin/Rvs) domain, a dimerization
module that binds and bends membranes. F-BAR domains
are dimerization modules that bind and bend membranes
and are found in proteins involved in membrane dynamics
and actin reorganization. F-BAR domain containing
proteins, also known as Pombe Cdc15 homology (PCH)
family proteins, include Fes and Fer tyrosine kinases,
PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and
srGAPs. Many members also contain an SH3 domain and play
roles in endocytosis. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
These tubules have diameters larger than those observed
with N-BARs. The F-BAR domains of some members such as
NOSTRIN and Rgd1 are important for the subcellular
localization of the protein.
Length = 191
Score = 31.5 bits (72), Expect = 0.40
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K++ +KKE + +K +KK +E K KK E+ +++ +K + E EE + + E
Sbjct: 94 DKEQARKKELAEGEKLKKKLQELWAKLAKKADEEYREQVEKLNPAQSEYEEEKLNKIQAE 153
Query: 61 EGRRRRRRRRRR 72
+ R R +
Sbjct: 154 QEREEERLEILK 165
Score = 29.2 bits (66), Expect = 2.9
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK KE K++ +K++ E +K +KK +E K KK EE +++ +K + E EEE
Sbjct: 89 EKVKEDKEQARKKELAEGEKLKKKLQELWAKLAKKADEEYREQVEKLNPAQSEYEEEKLN 148
Query: 61 EGRRRRRRRRRRR 73
+ + + R R
Sbjct: 149 KIQAEQEREEERL 161
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 32.7 bits (75), Expect = 0.40
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK-------------KK 47
E+K EK++ + +K+ + E +K K K+ K+++++ ++
Sbjct: 462 EEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEEDLATLPTLKLGDVPD 521
Query: 48 EEEEGEEEEEGEEEGR 63
E+ E E E +
Sbjct: 522 PIEKTSLETEVSNEAK 537
Score = 28.8 bits (65), Expect = 6.3
Identities = 9/49 (18%), Positives = 29/49 (59%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
E +++ +KE+++ +K+ + ++ +K + K+ K+++++ EE
Sbjct: 458 SPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEE 506
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 32.0 bits (73), Expect = 0.41
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 124 KICDFGLARVEEPDPNKAMTQE-VVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL-- 180
KI DFGLA++ + D + + V + A E ++ R Y+ DVWS G EL+
Sbjct: 149 KITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESIL-HRIYTHKSDVWSYGVTVWELMTF 207
Query: 181 GRR 183
G +
Sbjct: 208 GAK 210
Score = 28.1 bits (63), Expect = 8.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNS 389
K + YL R++HRD+ N+LV +
Sbjct: 120 KGMSYLEEKRLVHRDLAARNVLVKT 144
>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain. Sof1 is essential for cell
growth and is a component of the nucleolar rRNA
processing machinery.
Length = 88
Score = 30.3 bits (69), Expect = 0.41
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K ++ K+E K+ +K+K+E ++K K K E+KK
Sbjct: 49 KAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 28.0 bits (63), Expect = 2.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
K ++ K+E K+ KK+KE+ +++ K K E+KK
Sbjct: 49 KAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKK 85
Score = 27.6 bits (62), Expect = 3.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
K+ +K K++ K+ +K+K+E ++K K K E KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 32.7 bits (74), Expect = 0.42
Identities = 18/85 (21%), Positives = 38/85 (44%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ KE + K K + + K K ++K+ +K+ + E K ++ + +E+ + +
Sbjct: 252 NRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQ 311
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
R + R ++E EK RR
Sbjct: 312 RTVREKERELVDCQRELEKLNKERR 336
>gnl|CDD|218274 pfam04801, Sin_N, Sin-like protein conserved region. Family of
higher eukaryotic proteins. SIN was identified as a
protein that interacts specifically with SXL (sex
lethal) in a yeast two-hybrid assay. The interaction is
mediated by one of the SXL RNA binding domains.
Length = 422
Score = 32.4 bits (74), Expect = 0.42
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 35 KKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRR--RRKKEREKKRSSRRKP 87
KK + KK+E E+E+ +EE E E + + R +++K RE+ + +K
Sbjct: 141 KKDKRKKEEDTADEDEDPDEEAEEELKQVTVKFSRPETEKQRKRREQSYNFLQKK 195
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 30.6 bits (70), Expect = 0.43
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK--KKEKKKKEEEEGEEEEE 57
++ + + E+ + ++ E K+ K K+KK+ E E K K E K E E E E E
Sbjct: 39 RELQVELEELQAERNELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAELRELEAE 96
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 32.3 bits (73), Expect = 0.44
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
K+ DFG A+V + + T T Y APEIL+ H AA D W++G E+L
Sbjct: 171 KMTDFGFAKVVD---TRTYTL-CGTPEYIAPEILLNVGHGKAA-DWWTLGIFIYEILVGC 225
Query: 184 ILFQAQSPV 192
F A P+
Sbjct: 226 PPFYANEPL 234
Score = 30.3 bits (68), Expect = 1.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+YL S I++RD+KP NLL++ + +K
Sbjct: 144 FEYLQSLNIVYRDLKPENLLLDKDGFIK 171
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 31.5 bits (72), Expect = 0.44
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE 39
K + KKEK+K +K +++ + +K +E K K E
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFE 69
Score = 29.6 bits (67), Expect = 2.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE 38
K + KK+++K EK +K + EK ++ K K E
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFE 69
Score = 29.2 bits (66), Expect = 2.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE 33
K + KKEK+K +K K+ E +K ++ K +
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.8 bits (65), Expect = 3.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
K + KK+KEK +K K+ E +K ++ K + E + +
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFEFTDGD 74
Score = 28.0 bits (63), Expect = 6.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
K + KK+KEK +K +K+ E +K + K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 27.7 bits (62), Expect = 7.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
K + KKEK+K EK +K + + EK +E K K
Sbjct: 36 AKYQAKKEKEKAEKMRK-RYPELEKIFRELKSK 67
Score = 27.7 bits (62), Expect = 7.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKK 32
K + KK+++K EK +++ + +K + K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor beta.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) beta; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
beta is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR beta forms homodimers or heterodimers
with PDGFR alpha, depending on the nature of the PDGF
ligand. PDGF-BB and PDGF-DD induce PDGFR beta
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
beta signaling leads to a variety of cellular effects
including the stimulation of cell growth and chemotaxis,
as well as the inhibition of apoptosis and GAP
junctional communication. It is critical in normal
angiogenesis as it is involved in the recruitment of
pericytes and smooth muscle cells essential for vessel
stability. Aberrant PDGFR beta expression is associated
with some human cancers. The continuously-active fusion
proteins of PDGFR beta with COL1A1 and TEL are
associated with dermatofibrosarcoma protuberans (DFSP)
and a subset of chronic myelomonocytic leukemia (CMML),
respectively.
Length = 401
Score = 32.3 bits (73), Expect = 0.44
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 25/88 (28%)
Query: 124 KICDFGLARVEEPDPN---KAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KICDFGLAR D N K T + + APE + Y+ DVWS G + E
Sbjct: 279 KICDFGLARDIMRDSNYISKGST--FLPLKWMAPESIFNNL-YTTLSDVWSFGILLWE-- 333
Query: 181 GRRILFQAQSPVQQLGLITDLLGTPTPE 208
I L GTP PE
Sbjct: 334 -----------------IFTLGGTPYPE 344
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 30.2 bits (69), Expect = 0.44
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK 34
+KK++KKE K E K+ KK ++ K + +K
Sbjct: 60 SRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 29.1 bits (66), Expect = 1.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
+KKKEKK+ + + K+ KK ++ K +
Sbjct: 60 SRKKKEKKEVKAESKRYNAKKLTLEQRKAR 89
Score = 27.9 bits (63), Expect = 2.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK 41
KKKEKK+ K + ++ +K +++K + +K
Sbjct: 62 KKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 27.5 bits (62), Expect = 3.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
+KK++KKE K + K+ KK E++K +K
Sbjct: 60 SRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 27.1 bits (61), Expect = 5.3
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 6 KKKEKKKEKKKEKKKKEKK--KKEKKKKKEKK 35
KKKEKK+ K + K+ KK +++K + +K
Sbjct: 62 KKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase alpha.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) alpha isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKalpha is expressed
ubiquitously in many tissues. It plays a role in the
regulation of peripheral actin reorganization and
neurite outgrowth. It may also play a role in the
transferrin iron uptake pathway.
Length = 332
Score = 32.0 bits (72), Expect = 0.45
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILM----GARHYSAAVDVWSVGCIFAEL 179
++ DFG D + V T Y +PEIL G Y D WS+G E+
Sbjct: 142 RLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEM 201
Query: 180 LGRRILFQAQSPVQQLGLITD 200
L F A+S V+ G I +
Sbjct: 202 LYGETPFYAESLVETYGKIMN 222
Score = 27.7 bits (61), Expect = 10.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSN 390
++ +H +HRDIKP N+L++ N
Sbjct: 114 AIDSVHQLHYVHRDIKPDNILMDMN 138
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes kinase is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells. It plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. A recent study implicates Fes
kinase as a tumor suppressor in colorectal cancer.
Length = 252
Score = 31.9 bits (72), Expect = 0.46
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 124 KICDFGLARVEEPDPNKAMT--QEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAE 178
KI DFG++R EE D A T + + + APE L R YS+ DVWS G + E
Sbjct: 134 KISDFGMSR-EEEDGVYASTGGMKQIPVKWTAPEALNYGR-YSSESDVWSFGILLWE 188
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 32.5 bits (74), Expect = 0.46
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+ EKK E K + K K+ KE + K E K E+ ++ + + +
Sbjct: 32 KQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNK 91
Score = 29.4 bits (66), Expect = 4.2
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE--EEGEEEEEG 58
EKK E K + K +K ++ + K + K+E+ E+ + + +EE
Sbjct: 35 EKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNKEEI 94
Query: 59 E 59
E
Sbjct: 95 E 95
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 31.9 bits (73), Expect = 0.50
Identities = 10/50 (20%), Positives = 38/50 (76%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+++ + ++++ + E ++ E+ ++ ++++KE++KK++K++++++KE E
Sbjct: 159 QQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAE 208
Score = 30.4 bits (69), Expect = 1.5
Identities = 12/44 (27%), Positives = 33/44 (75%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+++ + E ++ ++ E++++E+K++ KK+ KE+K++E++ EK
Sbjct: 166 QRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAEK 209
Score = 29.6 bits (67), Expect = 2.7
Identities = 10/47 (21%), Positives = 33/47 (70%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+++ + ++++ E + ++ ++ E++++EEK++ KK+ +E + E+E
Sbjct: 159 QQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKE 205
Score = 27.7 bits (62), Expect = 9.4
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
++++++ E+++ E E ++ EE E EE E RR+++ + R+++E+E
Sbjct: 158 RQQQRQFEQRRNAELA-ETQRLEEAERRRREEKE----RRKKQDKERKQREKETAE 208
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 32.0 bits (73), Expect = 0.51
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC-IFAELLGR 182
KI DFGL + E + T + APE+L Y+ AVD W +G I+ L+G
Sbjct: 141 KIADFGLCK-EGMGFGDRTSTFCGTPEFLAPEVLTETS-YTRAVDWWGLGVLIYEMLVG- 197
Query: 183 RILFQAQSP 191
+SP
Sbjct: 198 ------ESP 200
Score = 30.8 bits (70), Expect = 1.1
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
L+YLH +I++RD+K NLL+++ +K
Sbjct: 114 LQYLHENKIVYRDLKLDNLLLDTEGFVK 141
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex
which functions in messenger ribonucleoprotein
metabolism and plays a role in preventing the
transcription-associated genetic instability. Tho2,
along with four other subunits forms THO.
Length = 296
Score = 31.9 bits (73), Expect = 0.51
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK--EEKKKEKK 45
+K+ E+ +++ KE +KKKKEKK+ K KK EE KK +
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIE 76
Score = 30.8 bits (70), Expect = 1.1
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
KE ++ +K+ K+ + KK+K+KK+ K ++ ++E KK E
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIE 76
Score = 29.6 bits (67), Expect = 2.8
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRK 74
KE ++ EK+ KE K++K+K++ K ++ EEE + + + ++R +
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELK-KHIEHNEKTKKRLSEE 88
Query: 75 KER 77
K
Sbjct: 89 KSS 91
Score = 29.2 bits (66), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 11 KKEKKK-EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
KE ++ EK+ KE K+KK+K+ K KK EEE + E
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIE 76
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB
receptors (EphB1-6), which display promiscuous
interactions with three ephrin-B ligands. One exception
is EphB2, which also interacts with ephrin A5. EphRs
contain an ephrin-binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion. EphBRs play important roles in synapse
formation and plasticity, spine morphogenesis, axon
guidance, and angiogenesis. In the intestinal
epithelium, EphBRs are Wnt signaling target genes that
control cell compartmentalization. They function as
suppressors of color cancer progression.
Length = 269
Score = 31.8 bits (72), Expect = 0.51
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+KYL +HRD+ N+LVNSN + K
Sbjct: 119 MKYLSEMNYVHRDLAARNILVNSNLVCK 146
Score = 31.4 bits (71), Expect = 0.69
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 124 KICDFGLARVEEPDP-NKAMTQEV---VTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
K+ DFGL+R E D + T + + + APE + R +++A DVWS G + E+
Sbjct: 146 KVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAI-AYRKFTSASDVWSYGIVMWEV 204
Query: 180 L 180
+
Sbjct: 205 M 205
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 32.4 bits (75), Expect = 0.52
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDST 101
+ + R R +K +R+KK S P KL++ ++ P+ T
Sbjct: 378 KAAQARLRAAKKVKRKKKTSGPALPGKLADCTSQDPERT 416
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 31.8 bits (73), Expect = 0.53
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 2 KKKEKKKEKKKE-KKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
++KEK ++ E ++ + +E K++KKKKK+KKKKEE ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 28.4 bits (64), Expect = 5.8
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+EK+K + + E+ + ++ KEKKKK++KKK+K++ E
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit;
Provisional.
Length = 329
Score = 31.7 bits (72), Expect = 0.53
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNS 389
+ +YLHS I++RD+KP NLL+++
Sbjct: 130 AFEYLHSKDIIYRDLKPENLLLDN 153
Score = 31.3 bits (71), Expect = 0.87
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 124 KICDFGLA-RVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR 182
K+ DFG A +V + T E Y APE++ H AVD W++G + E +
Sbjct: 158 KVTDFGFAKKVPDRTFTLCGTPE-----YLAPEVIQSKGH-GKAVDWWTMGVLLYEFIAG 211
Query: 183 RILFQAQSPVQ 193
F +P +
Sbjct: 212 YPPFFDDTPFR 222
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is
known to localise at the desmosomes and is implicated
in anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines.
A common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 30.5 bits (69), Expect = 0.53
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
+K +++ KEK++ E ++K E+++K+E+++ +K E+ E EE R++
Sbjct: 21 QKFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRK-------EKRELFEERRRKQLEL 73
Query: 69 RRRRRKKEREK 79
R+ +K E EK
Sbjct: 74 RKLEQKMEDEK 84
Score = 30.5 bits (69), Expect = 0.66
Identities = 16/61 (26%), Positives = 36/61 (59%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKK 80
K +++ + KEK++ E ++K ++++++E E +E E RRR++ RK E++ +
Sbjct: 22 KFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKME 81
Query: 81 R 81
Sbjct: 82 D 82
Score = 28.2 bits (63), Expect = 4.0
Identities = 17/63 (26%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 1 EKKKEKKKEKKK---EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E+ + KEK++ E+K E+++K+++++ +K+K+E ++ +K+ + +K E++ E+E+
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKL 85
Query: 58 GEE 60
E
Sbjct: 86 QET 88
Score = 27.4 bits (61), Expect = 6.8
Identities = 14/67 (20%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 2 KKKEKKKEKKKEKKKE--KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+E+ + KEK++ ++K E+++K+++++ K+K+E ++ ++K+ E E++ +
Sbjct: 23 FSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMED 82
Query: 60 EEGRRRR 66
E+ +
Sbjct: 83 EKLQETW 89
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 30.6 bits (70), Expect = 0.54
Identities = 10/43 (23%), Positives = 28/43 (65%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
E+K E+++++KK K+E ++++ +E K + K++++ +
Sbjct: 79 ERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 29.9 bits (68), Expect = 1.2
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 1 EKKKEK-----KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E++ +K + E+K E+++++KK+ K++ E++K ++ + K KEE +
Sbjct: 66 EERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 29.1 bits (66), Expect = 2.1
Identities = 12/60 (20%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 4 KEKKKEKKK------EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+E+ E +++ +++E +KK K++ E++K ++ K + + +EE +
Sbjct: 62 AWLKEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 27.9 bits (63), Expect = 5.0
Identities = 11/55 (20%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 12 KEKKKEKKKK-----EKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+E+ K E ++K ++++ EKK+ + + + +K EE + ++ ++
Sbjct: 62 AWLKEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKD 116
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 29.6 bits (67), Expect = 0.55
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 44 KKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSR 84
EE E ++E+ + RR +R RR++KK+++ K+ S+
Sbjct: 14 NGLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSK 54
Score = 29.6 bits (67), Expect = 0.69
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 45 KKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
EE E++E+ + RR +R RR+KK+++K + +
Sbjct: 14 NGLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSK 54
Score = 28.0 bits (63), Expect = 2.1
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 46 KKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
EEGEE++E + + RR +R RRKK+++KK + K
Sbjct: 14 NGLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSK 54
Score = 27.3 bits (61), Expect = 4.1
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK 37
K + + +++KKK+KK K+K K+ +KKE+ ++
Sbjct: 30 SKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRR 66
Score = 27.3 bits (61), Expect = 4.5
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 2 KKKEKKKEKKKEKKKEKKKKE--KKKKEKKKKKEKK 35
+ +++KKK+KK +KK KE +KKE+ +++ K+
Sbjct: 35 ISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
Score = 26.9 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKE--KKKKE 48
K + ++ ++KKK+KKK ++K KE +KKE
Sbjct: 28 DASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKE 62
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 32.1 bits (73), Expect = 0.55
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+ + E + KK K+ K+K + KKK+ KK K K E E
Sbjct: 591 RAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAERE 637
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase
kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MEKK3-like subfamily is
composed of MEKK3, MEKK2, and related proteins, all
containing an N-terminal PB1 domain, which mediates
oligomerization, and a C-terminal catalytic domain.
MEKK2 and MEKK3 are mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks),
proteins that phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK2 and MEKK3 activate MEK5
(also called MKK5), which activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade plays
roles in promoting cell proliferation, differentiation,
neuronal survival, and neuroprotection. MEKK3 plays an
essential role in embryonic angiogenesis and early heart
development. MEKK2 and MEKK3 can also activate the
MAPKs, c-Jun N-terminal kinase (JNK) and p38, through
their respective MAPKKs.
Length = 264
Score = 31.5 bits (71), Expect = 0.56
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 148 TQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
T Y+ +PE++ G Y DVWSV C E+L +
Sbjct: 172 TPYWMSPEVISG-EGYGRKADVWSVACTVVEMLTEK 206
Score = 30.0 bits (67), Expect = 1.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNS 389
+ + YLHS I+HRDIK N+L +S
Sbjct: 116 LQGVSYLHSNMIVHRDIKGANILRDS 141
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 29.5 bits (67), Expect = 0.57
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKK 25
KKK+ KK KK + EKKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 27.2 bits (61), Expect = 3.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKK 29
KKK+ KK KK + ++KKK +KK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.8 bits (60), Expect = 5.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKK 30
KK+K K+ KK EKKKK KKK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.8 bits (60), Expect = 5.7
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKK 46
KKKK KK KK E+KKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.8 bits (60), Expect = 6.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKK 47
KKK+ KK K+ EKKK+ KKK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.4 bits (59), Expect = 7.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKK 37
KK+K KK KK + +KK+K KK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKK 52
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 32.4 bits (73), Expect = 0.57
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
KE ++ + ++ K+ + KE K + K+ E KK KE K + ++ E ++ +
Sbjct: 527 KEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPK 586
Query: 64 R-RRRRRRRRRKKEREKKRSSRRKPFKLSEI-----SATRPDSTIDGYQARQPTR 112
+ ++ K+ R +R +R K KL E+ S RP+S + P R
Sbjct: 587 HPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQR 641
Score = 30.0 bits (67), Expect = 2.5
Identities = 35/148 (23%), Positives = 50/148 (33%), Gaps = 22/148 (14%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKK----KE---------KKKKEEKKKEKKKK 47
E + E KE E K+ K E K+ E KK KE KK E K K K
Sbjct: 531 EGEHEDSKESD-EPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPK 589
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRR--------RKKEREKKRSSRRKPFKLSEISATRPD 99
+ EE ++ + R R + + K E +S +R P S RP+
Sbjct: 590 DPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPE 649
Query: 100 STIDGYQARQPTRQLVMYQATYSSKICD 127
+ P + + K D
Sbjct: 650 GPKIIKSPKPPKSPKPPFDPKFKEKFYD 677
>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase
adapter protein beta. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) beta
subfamily, pseudokinase domain. The STRAD-beta subfamily
is part of a larger superfamily that includes the
catalytic domains of serine/threonine kinases (STKs),
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The pseudokinase domain shows similarity to
protein kinases but lacks crucial residues for catalytic
activity. STRAD forms a complex with the scaffolding
protein MO25, and the STK, LKB1, resulting in the
activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. STRAD-beta is also referred to as ALS2CR2
(Amyotrophic lateral sclerosis 2 chromosomal region
candidate gene 2 protein), since the human gene encoding
it is located within the juvenile ALS2 critical region
on chromosome 2q33-q34. It is not linked to the
development of ALS2.
Length = 328
Score = 31.9 bits (72), Expect = 0.59
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 20/146 (13%)
Query: 153 APEILMGARH-YSAAVDVWSVGCIFAELLGRRILFQAQSPVQQLGLITDLLGTP-TP--- 207
+PE+L + Y+ D++SVG EL R+ FQ Q L+ L G P +P
Sbjct: 176 SPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQM--LLQKLKGPPYSPLDI 233
Query: 208 ----------EEMRHACDGAKCHMLRQTRKSQSLSS--LYSLSSQATGEAVHLLVQM-LY 254
+ + D + +Q+++S L + SS+ A LV++ L
Sbjct: 234 TTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQ 293
Query: 255 FDPTKRISVNSALCHPYLDEGRLRFH 280
DP KR S +S L H + + + +
Sbjct: 294 QDPEKRPSASSLLSHAFFKQVKEQTQ 319
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 31.8 bits (72), Expect = 0.60
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK--KKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
K + + E + + + E KK+E++ + E+ +KE+ + + E +E +E+ E
Sbjct: 53 SKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLEN 112
Query: 59 EEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLS 91
EE R R + E S ++ S
Sbjct: 113 EELQYLREYNLFDRNNLQLEDNLQSLELQYEYS 145
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 31.8 bits (73), Expect = 0.60
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
+++ E + EE E + E E +++ +++ R R+ R + R
Sbjct: 601 GIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDDAARPRQLDRAMQGVAR 651
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 32.0 bits (73), Expect = 0.61
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 17/78 (21%)
Query: 23 KKKKEKKKKKEKKKKEE----------KKKEKKKKEEEEGEEEEEGEEEGRRRRR----- 67
K+K K K+ E+ + + ++EE+E EEEEE E+EG +
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEE 417
Query: 68 --RRRRRRKKEREKKRSS 83
K E SS
Sbjct: 418 FEEDDVESKYEDSDGNSS 435
Score = 30.1 bits (68), Expect = 2.6
Identities = 16/74 (21%), Positives = 32/74 (43%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRR 72
E ++K + K+ E+ + E + ++++EE E+EEE EEE +
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413
Query: 73 RKKEREKKRSSRRK 86
+E E+ +
Sbjct: 414 DDEEFEEDDVESKY 427
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family.
It is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are
multi-domain proteins that act as scaffolding proteins
and transducers of a variety of signaling pathways that
link membrane dynamics and the underlying actin
cytoskeleton. Most members contain an N-terminal IMD, an
SH3 domain, and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus, exccept for MIM which does not
carry an SH3 domain. Some members contain additional
domains and motifs. The IMD domain binds and bundles
actin filaments, binds membranes and produces membrane
protrusions, and interacts with the small GTPase Rac.
Length = 223
Score = 31.6 bits (72), Expect = 0.61
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+K+E + + E KK +KK +K K ++K + EE ++K+ E + + E
Sbjct: 123 QKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLE 182
Query: 62 GRRR 65
RRR
Sbjct: 183 ERRR 186
Score = 28.1 bits (63), Expect = 6.1
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EKK E ++ + +K+ KK+ K+K+E K + K+ +KK +K + E+ ++ E
Sbjct: 100 EKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALE 159
Query: 61 E 61
E
Sbjct: 160 E 160
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal
to the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast
function including bone development. In breast
epithelial cells, where Syk acts as a negative regulator
for epidermal growth factor receptor (EGFR) signaling,
loss of Syk expression is associated with abnormal
proliferation during cancer development suggesting a
potential role as a tumor suppressor. In mice, Syk has
been shown to inhibit malignant transformation of
mammary epithelial cells induced with murine mammary
tumor virus (MMTV).
Length = 257
Score = 31.5 bits (71), Expect = 0.62
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPN--KAMTQEVVTQYYRAPEILMGARHYSAAVDVWSV 172
V+ + +KI DFGL++ D N KA T + APE M +S+ DVWS
Sbjct: 126 VLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPEC-MNYYKFSSKSDVWSF 184
Query: 173 GCIFAE 178
G + E
Sbjct: 185 GVLMWE 190
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 32.0 bits (73), Expect = 0.62
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 32 KEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
++K EE+++E +++EEEE E EE EEG
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGP 374
Score = 31.2 bits (71), Expect = 1.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 32 KEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ E+K E++++E+EE EEEEE EE
Sbjct: 338 RCTWVNPEQKDEEEEQEDEEEEEEEEEPEE 367
>gnl|CDD|217037 pfam02443, Circo_capsid, Circovirus capsid protein. Circoviruses
are small circular single stranded viruses. This family
is the capsid protein from viruses such as porcine
circovirus and beak and feather disease virus. These
proteins are about 220 amino acids long.
Length = 237
Score = 31.3 bits (71), Expect = 0.63
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATR 97
RRRRRRRR R++ R ++ R+ + + I R
Sbjct: 11 PRRRRRRRRHWRRRYRRRRLHINRRRHRTNRIYTFR 46
Score = 30.1 bits (68), Expect = 1.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATR 97
R RR RRRRRR++ ++ RR R
Sbjct: 7 RYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNR 41
Score = 29.3 bits (66), Expect = 2.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 64 RRRRRRRRRRKKEREKKRSSRRKPFKLS 91
RRR RRRR R + R++R F+L+
Sbjct: 21 WRRRYRRRRLHINRRRHRTNRIYTFRLT 48
Score = 28.2 bits (63), Expect = 7.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRK 86
R R RRR RR ++ R ++R RR+
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRR 24
>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 4. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 4 (MST4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST4 is sometimes
referred to as MASK (MST3 and SOK1-related kinase). It
plays a role in mitogen-activated protein kinase (MAPK)
signaling during cytoskeletal rearrangement,
morphogenesis, and apoptosis. It influences cell growth
and transformation by modulating the extracellular
signal-regulated kinase (ERK) pathway. MST4 may also
play a role in tumor formation and progression. It
localizes in the Golgi apparatus by interacting with the
Golgi matrix protein GM130 and may play a role in cell
migration.
Length = 277
Score = 31.6 bits (71), Expect = 0.65
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSN 390
K L YLHS + +HRDIK N+L++
Sbjct: 111 LKGLDYLHSEKKIHRDIKAANVLLSEQ 137
Score = 27.7 bits (61), Expect = 9.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
K+ DFG+A + D V T ++ APE++ + Y + D+WS+G EL
Sbjct: 141 KLADFGVAG-QLTDTQIKRNTFVGTPFWMAPEVIQQSA-YDSKADIWSLGITAIEL 194
>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family. This family
consists of bacterial antibiotic resistance proteins,
which confer resistance to various aminoglycosides they
include: aminoglycoside 3'-phosphotransferase or
kanamycin kinase / neomycin-kanamycin phosphotransferase
and streptomycin 3''-kinase or streptomycin
3''-phosphotransferase. The aminoglycoside
phosphotransferases inactivate aminoglycoside
antibiotics via phosphorylation. This family also
includes homoserine kinase. This family is related to
fructosamine kinase pfam03881.
Length = 238
Score = 31.4 bits (71), Expect = 0.65
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 362 AAFKSLKYLHSARILHRDIKPGNLLVNSNC 391
AA +L ++H D+ PGNLLV+
Sbjct: 154 AALLALLPALPLVLVHGDLHPGNLLVDPGG 183
>gnl|CDD|233777 TIGR02205, septum_zipA, cell division protein ZipA. This model
represents the full length of bacterial cell division
protein ZipA. The N-terminal hydrophobic stretch is an
uncleaved signal-anchor sequence. This is followed by an
unconserved, variable length, low complexity region, and
then a conserved C-terminal region of about 140 amino
acids (see pfam04354) that interacts with the
tubulin-like cell division protein FtsZ [Cellular
processes, Cell division].
Length = 284
Score = 31.4 bits (71), Expect = 0.66
Identities = 21/131 (16%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRS 82
+KEK K +K + K + EE + + R + +++ S
Sbjct: 24 TSRKEKSKYFDKAPLDRMKLKSDDPTSEEMVQPDNSPNTRVERGEHPIPQPREQHLPSIS 83
Query: 83 S-----RRKPFKLSEIS--ATRPDSTIDGYQARQPTRQLVMYQATYSSKICDFGLARVEE 135
R K E S D Q +Q V + S V +
Sbjct: 84 ELVAYQRDKSVDDEEASIPMQPTQQQYDMPQPNNVAQQTVEPRVAKSLPEASPQEEEVGK 143
Query: 136 PDPNKAMTQEV 146
A ++
Sbjct: 144 NLEVTAPPKQK 154
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 31.8 bits (73), Expect = 0.67
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKK---------EKKKKKEKKKKEEKKKEKKKKEEEE 51
++ K E+ + K++K++ + K EK K+E K E K+K ++ E
Sbjct: 506 IERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIEW 565
Query: 52 GEEEEEGEE 60
+EE EGE+
Sbjct: 566 LKEELEGED 574
Score = 28.7 bits (65), Expect = 6.7
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
EK +++ +K E KK+ ++ + K+E + +++++ E K +E
Sbjct: 541 EKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEE 584
>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase;
Validated.
Length = 953
Score = 31.9 bits (73), Expect = 0.67
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 40 KKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPF 88
KKEK+ KE E E E + ++ R RRR K+R S F
Sbjct: 702 SKKEKEDKEAEAAAEAELLAKVKELQKYRPVRRRLP---KERPSITHSF 747
>gnl|CDD|221491 pfam12254, DNA_pol_alpha_N, DNA polymerase alpha subunit p180 N
terminal. This domain family is found in eukaryotes,
and is approximately 70 amino acids in length. The
family is found in association with pfam00136,
pfam08996, pfam03104. This family is the N terminal of
DNA polymerase alpha subunit p180 protein. The N
terminal contains the catalytic region of the alpha
subunit.
Length = 67
Score = 29.2 bits (66), Expect = 0.67
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 34 KKKKEEKKKEKKKKEEEEGEEEEE-----GEEEGRRRRRRRR 70
K + ++ KK+ +E E EEE++ EEE R+ R+R
Sbjct: 2 AKLRAAREGGKKRLDEYEVEEEKDIYDEVDEEEYRKIVRQRL 43
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 31.5 bits (72), Expect = 0.70
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE--EEEGEE 60
+ ++K +K EK K +++ +K KKK K + E++ +K +E +E + G E
Sbjct: 245 DELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAKYGNE 304
Score = 30.3 bits (69), Expect = 1.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK----EEKKKEKKKKEEEEGEE 54
++K +K EK K +EK +K K+K K E +++ E++ E K+ + G E
Sbjct: 248 QEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAKYGNE 304
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Fer kinase is a member
of the Fes subfamily of proteins which are cytoplasmic
(or nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. Fer kinase is expressed in a wide
variety of tissues, and is found to reside in both the
cytoplasm and the nucleus. It plays important roles in
neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 31.5 bits (71), Expect = 0.70
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAE 178
KI DFG++R E+ + + + + APE L R YS+ DVWS G + E
Sbjct: 133 KISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGR-YSSESDVWSYGILLWE 186
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 30.9 bits (70), Expect = 0.73
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+ +K+ +K K+ + E+ K EKKK + K EEE E
Sbjct: 65 ADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREG 112
>gnl|CDD|222366 pfam13764, E3_UbLigase_R4, E3 ubiquitin-protein ligase UBR4. This
is a family of E## ubiquitin ligase enzymes.
Length = 794
Score = 31.9 bits (73), Expect = 0.73
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E +K E + E + EK++ +EK+ + + + EG E E EE
Sbjct: 404 EGVAKKIDEVRDETRAEKRRLAMAMREKQLQALGMRTSSGGQIVASPRLLEGIESLE-EE 462
Query: 61 EG 62
+G
Sbjct: 463 DG 464
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 30.2 bits (68), Expect = 0.74
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKK 31
+ EK K+KKK+ KK +K KK KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.83
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKK 35
+ EK K+KKKK KK K+ KK +K
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.94
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEE 39
+ EK KK+KKK +K KK +K K++
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 1.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKK 42
E +K KKKK+K KK +K KK KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 1.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKK 45
K K+KKKK +K KK +K +K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 28.7 bits (64), Expect = 2.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE 27
+ EK K+KKK+ KK KK K+ KK+
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 28.3 bits (63), Expect = 3.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEE 49
EK KKK+KK K+ KK +K K++
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 4.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 29 KKKKEKKKKEEKKKEKKKKEEE 50
K KK+KKK ++ KK KK +++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 4.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKK 47
E +K KKKKK+ KK ++ KK KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|217360 pfam03087, DUF241, Arabidopsis protein of unknown function. This
family represents a number of Arabidopsis proteins.
Their functions are unknown.
Length = 230
Score = 31.2 bits (71), Expect = 0.75
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K +KK KK + + E + E+K+++ ++ + K EE E E E+
Sbjct: 152 DIKSSLLSEKKSKKGGSQSSLSIRSELSRLDEEKRRDNEEVKDILKRLEELENSIEELED 211
Query: 62 G 62
Sbjct: 212 E 212
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 30.8 bits (70), Expect = 0.75
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKK--KKKEKKKKEEKKKEKKKKEEEEG---EEEE 56
K+ + ++ E++ ++ K K+ K+ + K E+ KEK K G + +
Sbjct: 50 KEAALEALQRAEQRLQQAAKAKRAKDAAANAAEGKAFLEKNAKEKGVKTLPSGLQYKVLK 109
Query: 57 EGE 59
G+
Sbjct: 110 AGD 112
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding
protein) [Intracellular trafficking and secretion].
Length = 211
Score = 31.1 bits (70), Expect = 0.75
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE-----KKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
KKK+ K EK++ ++KE+ K + K +EKK ++ E E +EG+
Sbjct: 5 RKKKQAKIEKEENEQKERSLDVVSKGDAFGDGKAGGEEKKVQQSPFLENAVPEGDEGKGP 64
Query: 56 EEGE 59
E
Sbjct: 65 ESPN 68
Score = 29.6 bits (66), Expect = 2.4
Identities = 12/61 (19%), Positives = 23/61 (37%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K +EKK ++ + + E K + E E ++ + EE+E +
Sbjct: 36 GKAGGEEKKVQQSPFLENAVPEGDEGKGPESPNIHFEPVVELQRVHLKTNEEDETVLFKA 95
Query: 63 R 63
R
Sbjct: 96 R 96
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 29.9 bits (67), Expect = 0.76
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 36 KKEEKKKEKKKKEEEE 51
K E KK+EKK++EEEE
Sbjct: 87 KAEAKKEEKKEEEEEE 102
Score = 29.1 bits (65), Expect = 1.4
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 37 KEEKKKEKKKKEEEEGEEE 55
K E KKE+KK+EEEE E++
Sbjct: 87 KAEAKKEEKKEEEEEEEDD 105
Score = 28.3 bits (63), Expect = 2.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 39 EKKKEKKKKEEEEGEEEEE 57
K E KK+E++E EEEEE
Sbjct: 85 GAKAEAKKEEKKEEEEEEE 103
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 31.6 bits (72), Expect = 0.76
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 13 EKKKEKKKKEKKKKEKKKKKE-----KKKKEEKKKEKKKKEEEEGEEEEE 57
+KE K K+ + K KE + +E KKE +KE E E +
Sbjct: 51 SLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100
Score = 29.7 bits (67), Expect = 3.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K+ K + KE E + K+ K++ +KE + +E K K
Sbjct: 61 KEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK 104
>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase,
Interleukin-2-inducible T-cell Kinase. Protein Tyrosine
Kinase (PTK) family; Interleukin-2 (IL-2)-inducible
T-cell kinase (Itk); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Itk (also
known as Tsk or Emt) is a member of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Itk
contains the Tec homology (TH) domain containing one
proline-rich region and a zinc-binding region. Tec
kinases are expressed mainly by haematopoietic cells.
Itk is expressed in T-cells and mast cells, and is
important in their development and differentiation. Of
the three Tec kinases expressed in T-cells, Itk plays
the predominant role in T-cell receptor (TCR) signaling.
It is activated by phosphorylation upon TCR crosslinking
and is involved in the pathway resulting in
phospholipase C-gamma1 activation and actin
polymerization. It also plays a role in the downstream
signaling of the T-cell costimulatory receptor CD28, the
T-cell surface receptor CD2, and the chemokine receptor
CXCR4. In addition, Itk is crucial for the development
of T-helper(Th)2 effector responses.
Length = 256
Score = 31.1 bits (70), Expect = 0.76
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
K+ DFG+ R D + T + +PE+ ++ YS+ DVWS G + E+
Sbjct: 140 KVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSK-YSSKSDVWSFGVLMWEV 194
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 31.3 bits (71), Expect = 0.80
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 124 KICDFGLARVEEPD---PNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAE 178
KI DFG++R EE + + Q + + APE L R Y++ DVWS G + E
Sbjct: 133 KISDFGMSREEEGGIYTVSDGLKQIPIK--WTAPEALNYGR-YTSESDVWSYGILLWE 187
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 31.5 bits (72), Expect = 0.80
Identities = 16/55 (29%), Positives = 35/55 (63%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
E+++ KKK +K ++KEK+ +E ++ +++KE K E+ ++K + E+ E+
Sbjct: 314 EERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368
Score = 31.1 bits (71), Expect = 0.87
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+K EK +EK+K+ ++ ++ ++ K+ + ++ +KK E+ E E+
Sbjct: 319 KKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368
Score = 31.1 bits (71), Expect = 0.88
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E + +K K + K+ + + E++++ +KK +K +E+E+ EE E R
Sbjct: 285 ENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEER 344
Query: 65 RRRRR---RRRRKKEREKKRSSRRK 86
+ ++K E +KR + K
Sbjct: 345 KELNSKLEEIQKKLEDLEKRLEKLK 369
Score = 28.8 bits (65), Expect = 4.9
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
++KEK+ E+ ++ E++K+ K E+ +KK + ++ +K K K
Sbjct: 327 REKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKSNKS 373
>gnl|CDD|220068 pfam08911, NUP50, NUP50 (Nucleoporin 50 kDa). Nucleoporin 50 kDa
(NUP50) acts as a cofactor for the
importin-alpha:importin-beta heterodimer, which in turn
allows for transportation of many nuclear-targeted
proteins through nuclear pore complexes. The C terminus
of NUP50 binds importin-beta through RAN-GTP, the N
terminus binds the C terminus of importin-alpha, while
a central domain binds importin-beta.
NUP50:importin-alpha:importin-beta then binds cargo and
can stimulate nuclear import. The N-terminal domain of
NUP50 is also able to actively displace nuclear
localisation signals from importin-alpha.
Length = 66
Score = 28.9 bits (65), Expect = 0.80
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 49 EEEGEEEEEG------EEEGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
+EE + EE G EE + R+ ++ RRR K F
Sbjct: 15 DEEDDPEEAGTFKQASEEVLKTRKIKKARRRNAASSTSSKGAFKGFS 61
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 31.2 bits (71), Expect = 0.81
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K K K K K K+ K EK ++ + K+ KKK
Sbjct: 243 AKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 28.9 bits (65), Expect = 4.1
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E K + K + K K K +K EK + K +KKK
Sbjct: 242 EAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 29.9 bits (68), Expect = 0.82
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKK--KEKKKKE 48
+KK + K++ + +KK E+ K + E KKE
Sbjct: 78 QKKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
Score = 29.9 bits (68), Expect = 0.95
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE 38
+KK + K++ K EKK +E K + E KKE
Sbjct: 78 QKKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
Score = 28.3 bits (64), Expect = 3.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
E +K + +KK + K++ K EKK +E K E E KKE
Sbjct: 69 EIQKALQAFQKKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 30.5 bits (69), Expect = 0.83
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKE---KKKKEEEEGEEEEEGEEE 61
EKK + K K+ +E + E + KEEEE +E + ++E
Sbjct: 96 EKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDE 138
Score = 29.7 bits (67), Expect = 1.6
Identities = 12/62 (19%), Positives = 32/62 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+KK+ K + K+ E+ +++ ++ K++E+ + + ++ E+E+ +E E
Sbjct: 95 TEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILI 154
Query: 61 EG 62
E
Sbjct: 155 ED 156
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 29.7 bits (67), Expect = 0.84
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 37 KEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
+EE++ + + E+ EE E EEE +R R+R+
Sbjct: 73 EEERRSARLARLEDREEERLEKEEEREKRARKRK 106
>gnl|CDD|221144 pfam11595, DUF3245, Protein of unknown function (DUF3245). This is
a family of proteins conserved in fungi. The function is
not known, and there is no S. cerevisiae member.
Length = 145
Score = 30.3 bits (68), Expect = 0.85
Identities = 14/72 (19%), Positives = 34/72 (47%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K ++ K KK +K++ + K+K KE K+ K ++++ ++E+E
Sbjct: 74 DKLRRQLLGKNYKKVMAEKEKAEGGPVKRKAAVVAKEAKQSSKGVGDDDDDDDEDESRSA 133
Query: 62 GRRRRRRRRRRR 73
++ ++R+
Sbjct: 134 AFGKKGSNKKRK 145
Score = 29.9 bits (67), Expect = 1.1
Identities = 15/77 (19%), Positives = 34/77 (44%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K ++ K KK +K+K + ++K K+ K+ + +++++ E+
Sbjct: 69 ELDSNDKLRRQLLGKNYKKVMAEKEKAEGGPVKRKAAVVAKEAKQSSKGVGDDDDDDDED 128
Query: 61 EGRRRRRRRRRRRKKER 77
E R ++ KK +
Sbjct: 129 ESRSAAFGKKGSNKKRK 145
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 30.3 bits (68), Expect = 0.85
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 KEKKKEKKKEKKKKEKKKKEK--KKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K++K+ K + +K +KKKKEK +KK + KKKEEK K + E E E
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEPNQEVTEV 63
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 31.2 bits (70), Expect = 0.86
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ + E ++E+ E + E + ++ K K K+K ++ KK +K E E+E E E+
Sbjct: 239 QSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKPHIHIEYEQERENEK 296
Score = 30.8 bits (69), Expect = 1.1
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK------KKEKKKKEEEEGEE 54
EK++++K+ +E+++ + E + +K+K KKK EK E + EEEE E
Sbjct: 194 EKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSE 253
Query: 55 EEEGEEEGRRRRRRRRRRRKKEREKKR 81
E E+E + + R+R+ + +K R
Sbjct: 254 SESDEDEDEDNKGKIRKRKTDDAKKSR 280
Score = 29.2 bits (65), Expect = 3.7
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+++E E + +K+K KKK +K + E + E+++ E E +E+E+ +
Sbjct: 205 EEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDN 264
Query: 61 EGRRRRRRRRRRRKKEREK 79
+G+ R+R+ +K +
Sbjct: 265 KGKIRKRKTDDAKKSRKPH 283
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 31.4 bits (71), Expect = 0.86
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNS 389
++ Y+H I+HRDIK N+LVN
Sbjct: 272 AIDYIHGEGIIHRDIKTENVLVNG 295
Score = 28.7 bits (64), Expect = 6.9
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 19/75 (25%)
Query: 153 APEILMGARHYSAAVDVWSVG-CIFAELLGRRILFQAQSPVQQLGLITDLLGTPTPEEMR 211
APE+L G Y+ +VD+WS G IF + LF A E R
Sbjct: 330 APEVLAG-DPYTPSVDIWSAGLVIFEAAVHTASLFSASR---------------GDE--R 371
Query: 212 HACDGAKCHMLRQTR 226
D ++RQ +
Sbjct: 372 RPYDAQILRIIRQAQ 386
>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
structure and dynamics].
Length = 395
Score = 31.3 bits (71), Expect = 0.86
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRR 66
K KK+ EK KK++K K ++ + + E E E R+ R
Sbjct: 67 KRKKQTEKGKKEKKPKVSDRMDLDNENVQLEMLYSISNEREIRQLR 112
Score = 30.5 bits (69), Expect = 1.4
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
K KK+ EK KKEKK K + + + + + E E
Sbjct: 59 LGAAISIPKRKKQTEKGKKEKKPKVSDRMDLDNENVQLEMLYSISNERE 107
Score = 30.5 bits (69), Expect = 1.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 28 KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRR 72
+KK+ EK KKE+K K + + + + E R R+ R
Sbjct: 68 RKKQTEKGKKEKKPKVSDRMDLDNENVQLEMLYSISNEREIRQLR 112
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 31.6 bits (72), Expect = 0.87
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K KE K++K + K+E+K + + E+ E ++E
Sbjct: 212 KSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKE 263
Score = 30.8 bits (70), Expect = 1.5
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK---------KKKEEKKKEKKKKEEEE 51
K+++ + K+E+K + + E K+K EK K+ K+K ++
Sbjct: 219 NKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKL 278
Query: 52 G 52
G
Sbjct: 279 G 279
Score = 28.9 bits (65), Expect = 5.2
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
K+ +++K K K+E+K + + + ++E+ E
Sbjct: 214 KEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLE 266
Score = 28.5 bits (64), Expect = 8.2
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
K ++ K+EK K K++++ + ++ G E + E
Sbjct: 212 KSKEININKEEKNNG-SNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKE 263
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45;
Provisional.
Length = 193
Score = 30.8 bits (69), Expect = 0.88
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K K KE K+ E ++EK KKE ++ E +K E+ +E + + EE E+EEE EE
Sbjct: 6 RKNKAKEPKRRDIDELAEREKLKKEVEEIPE-QKPEDIVEELEDQPEEPPEQEEENEE 62
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 30.7 bits (70), Expect = 0.88
Identities = 14/73 (19%), Positives = 35/73 (47%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
+ + K + +K K++ ++ +++ E + + +K K+ E EE E ++ +
Sbjct: 60 PSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKEL 119
Query: 71 RRRKKEREKKRSS 83
++ K E EK +
Sbjct: 120 KKLKAELEKYEKN 132
Score = 28.7 bits (65), Expect = 3.9
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
KK ++ E++ E +E K+ EK+ K+ K + EK +K + ++ +K KEE
Sbjct: 95 LKKGREETEERTELLEELKQLEKELKKLKAELEKYEKNDPERIEKLKEE 143
Score = 28.4 bits (64), Expect = 4.8
Identities = 13/50 (26%), Positives = 31/50 (62%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
E+ K++ E + + +K KK +E+ ++ + +E K+ E++ K+ K + E+
Sbjct: 79 EELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEK 128
Score = 28.0 bits (63), Expect = 6.8
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE---KKKEKKKKEEEE 51
EK K+ ++E ++ + ++ K+ +K+ KK K E +K E+ ++ EK K+E +
Sbjct: 93 EKLKKGREETEERTELLEELKQLEKELKKLKAELEKYEKNDPERIEKLKEETKV 146
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 31.1 bits (70), Expect = 0.89
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
++ A+ KI DFGLARV E + A + APE + ++ DVWS G
Sbjct: 133 ILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAI-NFGSFTIKSDVWSFGI 191
Query: 175 IFAELL 180
+ E++
Sbjct: 192 LLMEIV 197
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of
70kDa MW N terminal. This domain is found in
eukaryotes. This domain is about 90 amino acids in
length. This domain is found associated with pfam00076.
This domain is part of U1 snRNP, which is the pre-mRNA
binding protein of the penta-snRNP spliceosome complex.
It extends over a distance of 180 A from its RNA
binding domain, wraps around the core domain of U1
snRNP consisting of the seven Sm proteins and finally
contacts U1-C, which is crucial for 5'-splice-site
recognition.
Length = 94
Score = 29.5 bits (67), Expect = 0.89
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
+ K++ + E EK+ E++K+EKK+K EKK +EE K+
Sbjct: 48 KDYKDEPPPEPTETWLEKR--EREKREKKEKLEKKLEEELKE 87
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 30.8 bits (70), Expect = 0.89
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K ++ + K+ K+K K+ ++KK +K +KK E+E
Sbjct: 86 KSSEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKKLAEQE 134
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 29.7 bits (67), Expect = 0.91
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK 34
KK++KK K K +KKK K K K+K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 27.7 bits (62), Expect = 4.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 27.0 bits (60), Expect = 8.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
KK++KK K K KKK+ K + K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 31.2 bits (70), Expect = 0.92
Identities = 13/56 (23%), Positives = 34/56 (60%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K +E++ +K+E++ ++ ++ E+ ++ E ++E E +K++E+ + E E E
Sbjct: 98 KNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENE 153
Score = 29.3 bits (65), Expect = 4.3
Identities = 13/52 (25%), Positives = 34/52 (65%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K E+++ +K+E++ ++ ++ +E ++ E ++E E+ E ++E+E + EG
Sbjct: 98 KNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEG 149
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 31.0 bits (70), Expect = 0.94
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+KYL S +HRD+ N LV N +K
Sbjct: 143 MKYLSSLNFVHRDLATRNCLVGKNYTIK 170
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 31.6 bits (73), Expect = 0.95
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 15/60 (25%)
Query: 6 KKKEKKK-EKKKEKKKKEKKKKEKK-------KK-------KEKKKKEEKKKEKKKKEEE 50
+ E + EK+ K +KE ++ EKK K KE++K E +++ K +E
Sbjct: 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKER 868
Score = 30.5 bits (70), Expect = 1.9
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 1 EKKKEK-KKEKKKEKKK-------EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
EK+ K +KE ++ +KK K +E +KE++K E ++K K KE+ +
Sbjct: 817 EKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLAR 871
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 31.6 bits (72), Expect = 0.95
Identities = 11/77 (14%), Positives = 27/77 (35%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + + + ++ K + + + K E + K EE+ +E G +
Sbjct: 865 NMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGAD 924
Query: 61 EGRRRRRRRRRRRKKER 77
+R + + K +
Sbjct: 925 SPEELMKRAKEYQDKHK 941
Score = 29.7 bits (67), Expect = 3.3
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K + + + +EK +E+ ++ K+ +E + + K
Sbjct: 900 KTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
Score = 28.9 bits (65), Expect = 6.4
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKK----EKKKKKEKKKKEEKKKEKK 45
+ K E + K ++K +++ + ++ K+ KE + K K
Sbjct: 896 QNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 31.4 bits (72), Expect = 0.95
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 2 KKKEKKKEKKKEKKKEKKKKE---------KKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
+K+++++ KKK K EK E +K++ ++ K +K +E++ +EEEE
Sbjct: 461 RKRKEEEAKKKAKTFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLEEEEVEEEEEE 520
Query: 53 EEEEEGEEE 61
E +
Sbjct: 521 EAVVVESAK 529
Score = 30.2 bits (69), Expect = 2.0
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 6 KKKEKKKEKKKEKKKKEK-------------KKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
+K K++E KK+ K EK +K+E ++ K KK E+++ EEEE
Sbjct: 460 SRKRKEEEAKKKAKTFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLEEEEVEEEEE 519
Query: 53 EEEEEGEEE 61
EE E
Sbjct: 520 EEAVVVESA 528
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 31.3 bits (72), Expect = 0.96
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK 35
+ + ++E K++ + K+ +EK+KK EK
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 30.9 bits (71), Expect = 1.3
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+ + +++ KE+ + K+ EEK+K+ +K E
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.5 bits (70), Expect = 2.0
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE 39
+ + ++E K++ E ++ ++KEKK ++
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 30.2 bits (69), Expect = 2.0
Identities = 4/33 (12%), Positives = 19/33 (57%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
+ + ++E +++ + K+ ++K+++ +K
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 30.2 bits (69), Expect = 2.1
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 22 EKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E++ K++ E +E ++++KK E+ E
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.2 bits (69), Expect = 2.2
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
+ +++ KE+ + K+ E+K+K+ +K E
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.8 bits (68), Expect = 2.7
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 20 KKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
++E +++ + K+ E+K++K +K E
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.8 bits (68), Expect = 2.9
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE 39
+ +++ +++ + KE ++K++K +K E
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.4 bits (67), Expect = 3.8
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+ +++ K++ + ++ +EK+KK E+
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 29.4 bits (67), Expect = 4.3
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK 30
+++ +++ E K+ +EK+KK +K
Sbjct: 512 VEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 29.0 bits (66), Expect = 4.9
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKK 31
+ ++E K++ + K+ E+K+K+ +K
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 29.0 bits (66), Expect = 5.0
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
+ +++ K++ + K+ +E++KK +K
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 29.0 bits (66), Expect = 5.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+E+ K++ + KE ++KEKK ++ E
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 28.6 bits (65), Expect = 6.4
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 25 KKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
++E KE+ + K+ ++K+++ E E
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine
Kinase, C-ros. Protein Tyrosine Kinases (PTK) family;
C-ros and Drosophila Sevenless proteins; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. C-ros is
expressed in embryonic cells of the kidney, intestine
and lung, but disappears soon after birth. It persists
only in the adult epididymis. Male mice bearing inactive
mutations of c-ros lack the initial segment of the
epididymis and are infertile. The Drosophila protein,
Sevenless, is required for the specification of the R7
photoreceptor cell during eye development.
Length = 269
Score = 31.0 bits (70), Expect = 0.98
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 117 YQATYSSKICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCI 175
Y A KI DFGLAR + + D + + ++ + APE L+ + ++ DVWS G +
Sbjct: 144 YDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGK-FTTQSDVWSFGVL 202
Query: 176 FAELL 180
E+L
Sbjct: 203 MWEIL 207
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 30.0 bits (68), Expect = 0.99
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 53 EEEEEGEEEGRRRRRRRRRRR 73
+++++ + + RRRRR+
Sbjct: 93 DDDDDDGDFDLTAQPRRRRRQ 113
Score = 29.6 bits (67), Expect = 1.4
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 51 EGEEEEEGEEEGRRRRRRRRRRRKKERE 78
+ +++++G+ + + RRRRR+ ++R+
Sbjct: 92 DDDDDDDGDFDLTAQPRRRRRQYDEDRD 119
Score = 28.8 bits (65), Expect = 2.7
Identities = 5/35 (14%), Positives = 19/35 (54%)
Query: 44 KKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKERE 78
+++ +++++ + + + RRRRR+ + +
Sbjct: 83 RRRMPAAFLDDDDDDDGDFDLTAQPRRRRRQYDED 117
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 31.3 bits (71), Expect = 1.0
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
++ E + E + E+ K++ +KK++ KKK +K+K
Sbjct: 324 DEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRK 368
Score = 30.9 bits (70), Expect = 1.2
Identities = 16/94 (17%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ E + ++ K EK E ++++ ++ ++ +EE ++++ ++
Sbjct: 304 KPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKK 363
Query: 61 EGRRR--------RRRRRRRRKKEREKKRSSRRK 86
+R+ RR + R ++K+ K R RR+
Sbjct: 364 PRKRKVNPVSNNFRRLKLRNKRKKGFKGRFRRRR 397
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 30.5 bits (69), Expect = 1.0
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K++ EK E+ +K + K +K++K+ KK +E +KE+KKK
Sbjct: 116 KDEVDEKNGAALIEELQKHRDKLKKEQKELLKKLDELEKEEKKK 159
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 31.2 bits (71), Expect = 1.0
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK---KKKEKKKKEEKKKEKKKKEEEEGE 53
E K E + K KK K K K + K+ ++ KK+KK E+ + E
Sbjct: 869 ENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEE 924
Score = 30.8 bits (70), Expect = 1.6
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+K + K K E K+ EK KK+KK E+ +E
Sbjct: 882 KKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEEA 925
Score = 29.3 bits (66), Expect = 4.5
Identities = 11/55 (20%), Positives = 29/55 (52%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+ E+++ K +++E + ++ + ++++ K+E K + E E EEE +
Sbjct: 813 ESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNI 867
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap
is involved in recombination. Rap (recombination adept
with plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 30.4 bits (69), Expect = 1.0
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K+EK +EKK+K + + E+++ K +K+K + + + K
Sbjct: 35 KREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 29.2 bits (66), Expect = 2.6
Identities = 11/37 (29%), Positives = 26/37 (70%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
K+EK +EKK++ + + ++++ K +K++ K + + KE
Sbjct: 35 KREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKE 71
Score = 28.5 bits (64), Expect = 4.6
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRR 69
K +K +EKK+K E + + + K +K+K + + +E + + R R
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKEAQAAVNKYIRLR 83
Score = 27.7 bits (62), Expect = 7.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE 33
++K++K E + E+++ K +KEK K KE
Sbjct: 39 AQEKKRKAEAQAERRELKARKEKLKTRSDWLKE 71
Score = 27.7 bits (62), Expect = 9.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
K +K +EKK+K + + + ++ K K+K K + +
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSD 67
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription
factors and mRNA splicing factors [Transcription / RNA
processing and modification / Cell division and
chromosome partitioning].
Length = 512
Score = 31.3 bits (71), Expect = 1.0
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRR 65
K+ KK K ++K +++ K KEE+++ K E G E G+ GR
Sbjct: 265 IYKKLPYRDKKSIYKHLRRKYNIFEQRGKWTKEEEQELAKLVVEHGGSWTEIGKLLGRMP 324
Query: 66 RRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTI 102
R R R K K + S D +
Sbjct: 325 NDCRDRWRDY---VKCGDTLKRNRWSIEEEELLDKVV 358
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 31.2 bits (71), Expect = 1.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
++++ K+ K+ KK E K KE K+ +E+ E K
Sbjct: 524 REEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSK 569
Score = 31.2 bits (71), Expect = 1.1
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
E +E++ ++ KE+ KK + K KE KE K+E E +
Sbjct: 521 EMAREEQGTNFGKRNSKERYKKNEDKIKEFAS--ALGKEILKEEPTENSSK 569
Score = 30.9 bits (70), Expect = 1.4
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+ K+ K+ KK + K ++ K+ K++ E + K
Sbjct: 527 QGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILK 573
>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Tie
subfamily; catalytic (c) domain. The Tie subfamily
consists of Tie1 and Tie2. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie proteins are
receptor tyr kinases (RTKs) containing an extracellular
region, a transmembrane segment, and an intracellular
catalytic domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2, while no specific
ligand has been identified for Tie1. The binding of
Ang-1 to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. In vivo studies of Tie1 show that it is
critical in vascular development.
Length = 270
Score = 30.8 bits (69), Expect = 1.0
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
++ Y +KI DFGL+R +E K M + V + A E L Y+ DVWS G
Sbjct: 143 ILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVR--WMAIESL-NYSVYTTNSDVWSYGV 199
Query: 175 IFAELL 180
+ E++
Sbjct: 200 LLWEIV 205
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 31.4 bits (71), Expect = 1.0
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK-KEEKKKEKKKKEEEEGEEEEEGE 59
+K K +K KK+ K EK K K+K K +++ +K + +++ EE+
Sbjct: 716 KKGVPPKPAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSC 775
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRKPF 88
K+ R+ R+ +
Sbjct: 776 SPSSSSSHHHSSSNKESRKSSRNKEEEML 804
Score = 30.7 bits (69), Expect = 1.8
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE-EKKKEKKKKEEEEGEEEEEGE 59
K +K KK+ K +K K K+K K +E +K + KK++ EE+
Sbjct: 720 PPKPAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSS 779
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRKP 87
+ RK R K+ P
Sbjct: 780 SSSHHHSSSNKESRKSSRNKEEEMLPSP 807
Score = 29.1 bits (65), Expect = 4.9
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
+K K EK KK+ K EK K K++ + +EE + +
Sbjct: 712 GHPYKKGVPPKPAEKDSLSAPKKQTSKTASEKSSSKGKRKHK-------NDEEADKIESK 764
Query: 69 RRRRRKKEREKKRSSRRKPFKLSEISATRPDS 100
++R +K SS S +R S
Sbjct: 765 KQRLEEKSSSCSPSSSSSHHHSSSNKESRKSS 796
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 30.8 bits (69), Expect = 1.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K K+ KK E K + + K+ K K + K +K E E K+E++ + E+ +
Sbjct: 123 KAKKSKKPLPVEPKAKVETKKVAKPSKVEVKPVEKDENVDPELLKREQQVLKVVEKTASQ 182
Query: 62 GR 63
Sbjct: 183 KE 184
Score = 30.8 bits (69), Expect = 1.2
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E++KE K K+ KK + K K E KK + K E K EK + + E + E+
Sbjct: 114 EREKELAAIKAKKSKKPLPVEPKAKVETKKVAKPSKVEVKPVEKDENVDPELLKREQ 170
Score = 28.1 bits (62), Expect = 9.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 2 KKKEKKKEKKKEKK--KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
K E KK K K K +K E E K++++ K +K +K+EE
Sbjct: 137 AKVETKKVAKPSKVEVKPVEKDENVDPELLKREQQVLKVVEKTASQKEEET 187
>gnl|CDD|189539 pfam00424, REV, REV protein (anti-repression trans-activator
protein).
Length = 90
Score = 28.9 bits (65), Expect = 1.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 60 EEGRRRRRRRRRRRKKEREKK 80
EG R+RR RRRR ++R+++
Sbjct: 28 GEGTARQRRNRRRRWRQRQRQ 48
Score = 27.8 bits (62), Expect = 3.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 56 EEGEEEGRRRRRRRRRRRKKE 76
EG RR RRRR R+R+++
Sbjct: 28 GEGTARQRRNRRRRWRQRQRQ 48
Score = 26.6 bits (59), Expect = 7.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 58 GEEEGRRRRRRRRRRRKKERE 78
GE R+RR RRRR R+++R+
Sbjct: 28 GEGTARQRRNRRRRWRQRQRQ 48
>gnl|CDD|236272 PRK08475, PRK08475, F0F1 ATP synthase subunit B; Validated.
Length = 167
Score = 30.4 bits (69), Expect = 1.1
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
E+ +EK KE K++K+ KK E+ K++ + E KKE +K +++ + + E
Sbjct: 63 EEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIE 117
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest
cells, and testicular cells. Aberrant PDGFR alpha
expression is associated with some human cancers.
Mutations in PDGFR alpha have been found within a subset
of gastrointestinal stromal tumors (GISTs). An active
fusion protein FIP1L1-PDGFR alpha, derived from
interstitial deletion, is associated with idiopathic
hypereosinophilic syndrome (HES) and chronic
eosinophilic leukemia (CEL).
Length = 400
Score = 31.1 bits (70), Expect = 1.1
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 124 KICDFGLARVEEPDPNK-AMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KICDFGLAR D N + + + APE + Y+ DVWS G + E+
Sbjct: 277 KICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFD-NLYTTLSDVWSYGILLWEIF 333
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 30.9 bits (70), Expect = 1.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK 36
K EK+ +KK K+ + + K++K +K+KK KK+
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQ 158
Score = 29.4 bits (66), Expect = 3.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
E + K EK+ +KK ++ + + K+ K++K +K K++
Sbjct: 119 ELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPV 162
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 30.8 bits (70), Expect = 1.1
Identities = 12/44 (27%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K+K++E+++ ++++E + E+ + ++K KE++K E EE
Sbjct: 121 KQKEEEERRVERRREL----GLEDPEQLRLKQKAKEEQKAESEE 160
Score = 29.7 bits (67), Expect = 2.5
Identities = 11/41 (26%), Positives = 29/41 (70%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+K+K+E++++ +++++ + E+ + K+K +EE+ E EE
Sbjct: 120 QKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 29.3 bits (66), Expect = 3.2
Identities = 9/40 (22%), Positives = 27/40 (67%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K+K+++E++ + +++ + ++ + K+K K+E++ EE
Sbjct: 121 KQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 28.9 bits (65), Expect = 3.9
Identities = 12/59 (20%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEE--KKKEKKKKEEEEGEEEEEGEEEGRRR 65
E + + +++ + +K+KE+++++ ++++E + E+ + +++ EE++ EE R R
Sbjct: 106 EIRSDVRRQLRFLAQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRHR 164
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 3. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 3 (MST3) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST3
phosphorylates the STK NDR and may play a role in cell
cycle progression and cell morphology. It may also
regulate paxillin and consequently, cell migration. MST3
is present in human placenta, where it plays an
essential role in the oxidative stress-induced apoptosis
of trophoblasts in normal spontaneous delivery.
Dysregulation of trophoblast apoptosis may result in
pregnancy complications such as preeclampsia and
intrauterine growth retardation.
Length = 277
Score = 30.8 bits (69), Expect = 1.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSN 390
K L YLHS + +HRDIK N+L++ +
Sbjct: 111 LKGLDYLHSEKKIHRDIKAANVLLSEH 137
>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 4. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK4
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK4 has a limited tissue distribution. It
is mainly found in the testis, but is also present in
the cerebellum and kidney. It is expressed as multiple
splice variants with different domain architectures. It
is post-translationally palmitoylated and localized in
the membrane. GRK4 polymorphisms are associated with
hypertension and salt sensitivity, as they cause
hyperphosphorylation, desensitization, and
internalization of the dopamine 1 (D1) receptor while
increasing the expression of the angiotensin II type 1
receptor. GRK4 plays a crucial role in the D1 receptor
regulation of sodium excretion and blood pressure.
Length = 285
Score = 30.7 bits (69), Expect = 1.1
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
+I D GLA V+ P+ + + V T Y APE++ + Y+ + D W +GC+ E++
Sbjct: 142 RISDLGLA-VQIPE-GETVRGRVGTVGYMAPEVINNEK-YTFSPDWWGLGCLIYEMI--- 195
Query: 184 ILFQAQSPVQQ 194
Q QSP ++
Sbjct: 196 ---QGQSPFRK 203
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 31.1 bits (71), Expect = 1.1
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
K KEK K +K +EK ++EE+++ + +EEEE E+EEE +E+ + + K++
Sbjct: 3 DKLKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEK 61
Score = 30.7 bits (70), Expect = 1.4
Identities = 14/49 (28%), Positives = 36/49 (73%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+K E+K E+++E++ + ++E++++++++KKEK +K K + KE++
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKD 62
Score = 28.4 bits (64), Expect = 6.9
Identities = 12/42 (28%), Positives = 32/42 (76%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K+K K +K E+K +E++++E + +E++++E+++++K+K
Sbjct: 6 KEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKP 47
Score = 28.0 bits (63), Expect = 8.2
Identities = 10/52 (19%), Positives = 36/52 (69%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+K ++K +++E+++ + +E++++E +++K++K K + + +E++ E+
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIED 65
>gnl|CDD|191868 pfam07839, CaM_binding, Plant calmodulin-binding domain. The
sequences featured in this family are found repeated in
a number of plant calmodulin-binding proteins, and are
thought to constitute the calmodulin-binding domains.
Binding of the proteins to calmodulin depends on the
presence of calcium ions. These proteins are thought to
be involved in various processes, such as plant defence
responses and stolonisation or tuberization.
Length = 115
Score = 29.7 bits (67), Expect = 1.1
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKK---EKKKKEEKKKEKKKKEEEEG--EEEEE 57
+EKK+E++ +K+ K +KEK K KK K+ + +K +K E +
Sbjct: 1 TEEKKEERRSKKEDPKPEKEKPKSWSNLKKVILLKRFVKSLEKVRKFNPRGPNFLPLEPD 60
Query: 58 GEEEGRRRRRRRRRRRKKERE 78
E E R + RKK E
Sbjct: 61 PEAEKVDLRHQDTDERKKAEE 81
>gnl|CDD|235222 PRK04125, PRK04125, murein hydrolase regulator LrgA; Provisional.
Length = 141
Score = 30.0 bits (68), Expect = 1.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKK 37
K EK+K++KK+K+ K K + K
Sbjct: 118 GKTEKEKEDKKEKKVKIKGRQHGK 141
Score = 28.9 bits (65), Expect = 2.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 30 KKKEKKKKEEKKKEKKKKEEEEGE 53
K EK+K+++K+K+ K K + G+
Sbjct: 118 GKTEKEKEDKKEKKVKIKGRQHGK 141
Score = 28.1 bits (63), Expect = 4.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKK 29
K EK+KE KKEKK K K ++ K
Sbjct: 118 GKTEKEKEDKKEKKVKIKGRQHGK 141
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 30.0 bits (68), Expect = 1.1
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ KE+ + E ++E ++ ++ E ++ +K+ ++ ++ K + EEE +E E
Sbjct: 50 ERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEA 109
Query: 61 EGRRRRRR 68
E + R
Sbjct: 110 EIEAEKER 117
Score = 28.8 bits (65), Expect = 3.2
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK-KEEKKKEKKKKEEEEGEEEEEGEE 60
+ K + E+ KE+ + + E++ ++ +++ E ++ KK+ E+ E + E EE
Sbjct: 39 QAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEE 98
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E R + + E+E+ R
Sbjct: 99 ELERIKEAAEAEIEAEKERALEELRA 124
Score = 28.0 bits (63), Expect = 5.7
Identities = 12/65 (18%), Positives = 36/65 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ +++ +E +++ + ++ +K+ ++ ++ + + +EE ++ K+ E E E+E E
Sbjct: 61 AEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALE 120
Query: 61 EGRRR 65
E R
Sbjct: 121 ELRAE 125
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 31.4 bits (71), Expect = 1.1
Identities = 15/86 (17%), Positives = 41/86 (47%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRR 72
EK+ + + E++ +++ E++ + + ++K ++E RR ++
Sbjct: 394 EKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAWQK 453
Query: 73 RKKEREKKRSSRRKPFKLSEISATRP 98
++ REK+ + R+ + ++I A R
Sbjct: 454 QRFLREKQTAFERQKTEHTKIIALRL 479
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 30.9 bits (70), Expect = 1.1
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRR--------RR 68
E++++ +K++E++ + KK E + K+E E E EE +E RR
Sbjct: 116 EQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVNSMLEA 175
Query: 69 RRRRRKKEREKKR 81
RR KKE E++
Sbjct: 176 LFRREKKEEEEEE 188
Score = 30.5 bits (69), Expect = 1.3
Identities = 21/128 (16%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE-------------------------KK 35
++++ +K+ +++ KK E + + K++ E
Sbjct: 117 QEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVNSMLEAL 176
Query: 36 KKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISA 95
+ EKK+E++++EE+E + RRR E +++ + K S
Sbjct: 177 FRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSSSP 236
Query: 96 TRPDSTID 103
+P S +
Sbjct: 237 AKPTSILK 244
Score = 28.6 bits (64), Expect = 6.0
Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 30/143 (20%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE---------------------E 39
E+++E+ +++++E+ K+ + + K+E + E E
Sbjct: 115 EEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVNSMLE 174
Query: 40 KKKEKKKKEEEEGEEEEE---------GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKL 90
++KKEEEE EEE+E E E RRR E + + K
Sbjct: 175 ALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSS 234
Query: 91 SEISATRPDSTIDGYQARQPTRQ 113
S T ++ P+
Sbjct: 235 SPAKPTSILKKSAAKRSEAPSSS 257
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 30.9 bits (70), Expect = 1.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 365 KSLKYLHSARILHRDIKPGNLL 386
+L LHS I+HRD+KP N++
Sbjct: 266 FALDGLHSTGIVHRDVKPQNII 287
Score = 29.8 bits (67), Expect = 2.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 248 LLVQMLYFDPTKRISVNSALCHPYLD 273
LL M+ F +RIS +AL HPY D
Sbjct: 429 LLKSMMRFKGRQRISAKAALAHPYFD 454
>gnl|CDD|221820 pfam12870, Lumazine_bd, Lumazine-binding domain. This is a
family of putative lipoproteins from bacteria. Many
members of the family are defined as having a
lumazine-binding domain. Lumazine is a fluorescent
accessory protein having 6,7-dimethyl-8-(1'-D-ribityl)
lumazine (DMRL) as its authentic chromophore; it
modulates the emission of bacterial luciferase to
shorter wavelengths with increasing luminous strength.
The family is related to the NTF2-like transpeptidase
family.
Length = 108
Score = 29.4 bits (66), Expect = 1.2
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK-----KKEEEEGEEE 55
++ +K KE+ K K + K K EKK + + EEK+ K +G+E+
Sbjct: 34 DRSPDKLKEQFAGKVKMMVDEMKAKIEKKGGVKIIEVEEKEIGDSATVTVKVTYGDGKEK 93
Query: 56 EE 57
E
Sbjct: 94 TE 95
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 30.5 bits (69), Expect = 1.2
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E+ +E + +KE ++ ++ + +++ K+++E+ + EKK ++ ++E EEE E
Sbjct: 15 EQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASE 74
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E R R E K R K
Sbjct: 75 EERERLEAEVDEATAEVAKLEEEREK 100
Score = 29.7 bits (67), Expect = 2.2
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + +KK + E++ + ++E E+++++ + + +E E K EEE ++E E +
Sbjct: 48 EAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQ 107
Query: 61 -EGRRRRRRRRRRRKKEREK 79
+ R + R ++
Sbjct: 108 LQQELREAQEAHERARQELL 127
Score = 28.9 bits (65), Expect = 3.7
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKE----KKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
E+ + +EK K++++E + EKK E ++ +E+ E+++E+ + E +E E
Sbjct: 32 EETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEATAEV 91
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
EE R ++ R+ ++E + + + +
Sbjct: 92 AKLEEEREKKEAETRQLQQELREAQEAHER 121
Score = 28.2 bits (63), Expect = 6.6
Identities = 17/84 (20%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE-EE 61
+ E+++++ +E+ ++ ++ ++ +++ ++ E+ E ++K K+++EE + E++ E EE
Sbjct: 2 EAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEE 61
Query: 62 GRRRRRRRRRRRKKEREKKRSSRR 85
RR ++ERE+ +
Sbjct: 62 ENRRLEEEAAASEEERERLEAEVD 85
>gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP).
This family consists of a series of primate specific
nuclear pore complex interacting protein (NPIP)
sequences. The function of this family is unknown but is
well conserved from African apes to humans.
Length = 350
Score = 30.9 bits (69), Expect = 1.2
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE- 59
E K K K K K + K K K+ +K K+ E +KE + E EE G+
Sbjct: 114 ETKVRAKICKMKVTTKINHHDKINGKRKTAKEHLRKLSMKECEHAEKERQVSEAEENGKL 173
Query: 60 ---------EEGRRRRRRRRRRRKKEREKKRSSRRKPF 88
E +R + RRR + K S RKP
Sbjct: 174 DMKEIHTYKEMFQRAQALRRRAEDYHKCKIPPSARKPL 211
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 30.3 bits (68), Expect = 1.2
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKKKKE 48
++KEKKK K++KE KKKE+ K+E
Sbjct: 95 EEKEKKKNLNKEEKEAKKKERAKRE 119
Score = 30.3 bits (68), Expect = 1.6
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKK 26
E++KEKKK KE+K+ KKK+ K++
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
Score = 28.7 bits (64), Expect = 3.8
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKK 30
E++KEKKK KE+K+ +KK++ K++
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
>gnl|CDD|217356 pfam03078, ATHILA, ATHILA ORF-1 family. ATHILA is a group of
Arabidopsis thaliana retrotransposons belonging to the
Ty3/gypsy family of the long terminal repeat (LTR)
class of eukaryotic retrotransposons. The central
region of ATHILA retrotransposons contains two or three
open reading frames (ORFs). This family represents the
ORF1 product. The function of ORF1 is unknown.
Length = 456
Score = 30.7 bits (69), Expect = 1.2
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 36 KKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRR-KKEREKKRSSRRKPFKLSEIS 94
++EE + K+ E +E+ E+E + RRR + KK+ E K K E
Sbjct: 2 RREEIARGKRAMESRYELIDEDVEDEYQPEPTRRRTKLLKKKDELTPEEYYKLLKELEFE 61
Query: 95 ATR 97
TR
Sbjct: 62 GTR 64
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 30.8 bits (69), Expect = 1.3
Identities = 16/59 (27%), Positives = 34/59 (57%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ + E +EKKKK + K+ ++++E+ E + ++ K+ +E EE E+G +E
Sbjct: 129 RRSTRYEPLTSAAEEKKKKLLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQE 187
Score = 29.2 bits (65), Expect = 4.1
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
E+KK+K + KK +E++++ ++ E ++ K KE EE E+ + E
Sbjct: 142 EEKKKKLLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEE 188
>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 2. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK2 was the first identified target of
activated RhoA, and was found to play a role in stress
fiber and focal adhesion formation. It is prominently
expressed in the brain, heart, and skeletal muscles. It
is implicated in vascular and neurological disorders,
such as hypertension and vasospasm of the coronary and
cerebral arteries. ROCK2 is also activated by caspase-2
cleavage, resulting in thrombin-induced microparticle
generation in response to cell activation. Mice
deficient in ROCK2 show intrauterine growth retardation
and embryonic lethality because of placental
dysfunction.
Length = 370
Score = 30.8 bits (69), Expect = 1.3
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+L +HS ++HRD+KP N+L++ + LK
Sbjct: 154 ALDAIHSMGLIHRDVKPDNMLLDKHGHLK 182
Score = 29.2 bits (65), Expect = 4.1
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILM---GARHYSAAVDVWSVGCIFAELL 180
K+ DFG + V T Y +PE+L G +Y D WSVG E+L
Sbjct: 182 KLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEML 241
Query: 181 GRRILFQAQSPVQQLGLITD 200
F A S V I D
Sbjct: 242 VGDTPFYADSLVGTYSKIMD 261
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAP4K4 is also called Nck Interacting kinase
(NIK). It facilitates the activation of the MAPKs,
extracellular signal-regulated kinase (ERK) 1, ERK2, and
c-Jun N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 30.7 bits (69), Expect = 1.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L +LH+ +++HRDIK N+L+ N +K
Sbjct: 131 LRGLAHLHAHKVIHRDIKGQNVLLTENAEVK 161
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 30.9 bits (70), Expect = 1.3
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KE+ K+ E +K E+ + +E K++ ++ EEEE EEEEE EE
Sbjct: 359 KERVKDAIPEDLYDKIATEEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEA 416
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 30.2 bits (69), Expect = 1.3
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 14/103 (13%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK---KKEKK--KKEE---KKKEKKKKEEEEG 52
KKE E K+E K + + E++ KE++ ++EK+ +KEE +K E +K+EE
Sbjct: 49 ALKKEALLEAKEEIHKLRAEAERELKERRNELQRQEKRLLQKEETLDRKDESLEKKEESL 108
Query: 53 EEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISA 95
EE+E+ R+++ +++E E+ +++ +L IS
Sbjct: 109 EEKEKELAA----RQQQLEEKEEELEELIEEQQQ--ELERISG 145
>gnl|CDD|221525 pfam12314, IMCp, Inner membrane complex protein. This domain is
found in bacteria and eukaryotes. This domain is about
120 amino acids in length. This family is the inner
membrane complex of parasitic organisms. This is a
cytoskeletal structure associated with the pellicle of
these parasites.
Length = 98
Score = 28.8 bits (65), Expect = 1.3
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
EK K + KE+ K K+ EK + + KE + +E E EE
Sbjct: 45 EKIIYVPKVEIKERIIPVPKIVTKE------IEKYVEVPQIKEVDRYKEVEVVEE 93
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 30.9 bits (70), Expect = 1.3
Identities = 15/76 (19%), Positives = 33/76 (43%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
K+ K ++K++ + ++ E + +EE+++ + +EEE + EEEG +
Sbjct: 350 KESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESS 409
Query: 71 RRRKKEREKKRSSRRK 86
+ E K
Sbjct: 410 SDVGSDSESKADKESA 425
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded
proton translocating A0 complex. It is unclear
precisely where AhaH fits into these complexes.
Length = 85
Score = 28.7 bits (64), Expect = 1.3
Identities = 15/57 (26%), Positives = 35/57 (61%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E++K++ E ++E ++ ++ E++ + ++ K+ +EE +KE +K EE +E E
Sbjct: 20 EERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEA 76
Score = 27.5 bits (61), Expect = 3.1
Identities = 19/62 (30%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE-EEEGE 59
E+ E+ +E++K++ E +++ ++ E+ +++ K EE KE +++ E+E E+ EEGE
Sbjct: 12 EELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGE 71
Query: 60 EE 61
+E
Sbjct: 72 KE 73
Score = 26.3 bits (58), Expect = 7.9
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE--EEGEEEGRR 64
++ KK E+ E+ +E +++ K++ E +++ + E+ ++E + EE +E EEE +
Sbjct: 2 EEIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEK 61
Query: 65 RRRRRRRRRKKERE 78
+ R +KE E
Sbjct: 62 EAEKIREEGEKEIE 75
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 30.8 bits (70), Expect = 1.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
K K+ EK++ KK K KEK K KK+E K
Sbjct: 200 KIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKP 238
Score = 30.8 bits (70), Expect = 1.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K+++K+E KK K KEK K + KK+E+ K
Sbjct: 202 KEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKP 238
Score = 28.8 bits (65), Expect = 6.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK 37
E +KE+ +K K K++ K + KK++ K K
Sbjct: 203 EDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
Score = 28.1 bits (63), Expect = 9.8
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKK-KEKKKKKEKKKKEEKKKEK 44
K K KE +KE+ +K K K+K K + KKEE+ K K
Sbjct: 197 KYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 31.1 bits (70), Expect = 1.4
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
EK ++ E+ E ++K ++ + + KE K E+ + +E+ +EE
Sbjct: 3905 EKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEE 3957
Score = 30.7 bits (69), Expect = 1.5
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E +E E ++K ++ + + KE+ K + K+ +E E+EEE ++
Sbjct: 3910 EPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDD 3962
Score = 30.7 bits (69), Expect = 1.6
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
E +E E E+K E+ + K+ + K E K ++E+E EEE +
Sbjct: 3910 EPNEEDLLET--EQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDD 3962
Score = 30.0 bits (67), Expect = 2.8
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 1 EKKKEKKKE---KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E +E E K E+ + + KE K + K ++K+++++ ++ G ++E
Sbjct: 3910 EPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEI 3969
Query: 58 GEEEG 62
+
Sbjct: 3970 QPDIQ 3974
>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 5. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK5
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK5 is widely expressed in many tissues.
It associates with the membrane though an N-terminal
PIP2 binding domain and also binds phospholipids via its
C-terminus. GRK5 deficiency is associated with early
Alzheimer's disease in humans and mouse models. GRK5
also plays a crucial role in the pathogenesis of
sporadic Parkinson's disease. It participates in the
regulation and desensitization of PDGFRbeta, a receptor
tyrosine kinase involved in a variety of downstream
cellular effects including cell growth, chemotaxis,
apoptosis, and angiogenesis. GRK5 also regulates
Toll-like receptor 4, which is involved in innate and
adaptive immunity.
Length = 285
Score = 30.7 bits (69), Expect = 1.4
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRR 183
+I D GLA V+ P+ +++ V T Y APE+L R Y+ + D W +GC+ E++
Sbjct: 142 RISDLGLA-VKIPE-GESIRGRVGTVGYMAPEVLNNQR-YTLSPDYWGLGCLIYEMI--- 195
Query: 184 ILFQAQSP 191
+ QSP
Sbjct: 196 ---EGQSP 200
>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein
Serine/Threonine Kinases, RPK118 and similar proteins.
Serine/Threonine Kinases (STKs), RPK118-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RPK118-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily show similarity to
human RPK118, which contains an N-terminal Phox homology
(PX) domain, a Microtubule Interacting and Trafficking
(MIT) domain, and a kinase domain containing a long
insert. Also included in the family is human RPK60 (or
ribosomal protein S6 kinase-like 1), which also contains
MIT and kinase domains but lacks a PX domain. RPK118
binds sphingosine kinase, a key enzyme in the synthesis
of sphingosine 1-phosphate (SPP), a lipid messenger
involved in many cellular events. RPK118 may be involved
in transmitting SPP-mediated signaling. RPK118 also
binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118
may be involved in the transport of PRDX3 from the
cytoplasm to its site of function in the mitochondria.
Length = 237
Score = 30.2 bits (68), Expect = 1.4
Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 42/132 (31%)
Query: 145 EVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRRILFQAQSPVQQLGLITDLLGT 204
E V Y APE+ G + A D WS+G I ELL + L +
Sbjct: 142 EAVENMYCAPEV-GGISEETEACDWWSLGAILFELLTGKTLVE----------------- 183
Query: 205 PTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATGEAVHLLVQMLYFDPTKRI--- 261
CH + ++ + EA LL Q+L F+PT+R+
Sbjct: 184 --------------CHPSGINTHTT-----LNIPEWVSEEARSLLQQLLQFNPTERLGAG 224
Query: 262 --SVNSALCHPY 271
V HP+
Sbjct: 225 VAGVEDIKSHPF 236
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 30.6 bits (70), Expect = 1.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
++ E KE + K+ + E+ E K+ KEK K+ E ++ + E
Sbjct: 51 ERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAE 97
Score = 30.6 bits (70), Expect = 1.4
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK------KKEEKKKEKKKKEEEEGEE 54
++++ K + +E + E+ + K+ K+ E + +E K++ K+ E E
Sbjct: 35 DEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDEL 94
Query: 55 EEEGEE 60
E E +
Sbjct: 95 EAELDT 100
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 30.4 bits (69), Expect = 1.4
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK ++ E+ + + E ++ EKK K + K++ K+ EK++E K++ EE E+ + GE+
Sbjct: 221 KKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKRGEK 279
Score = 29.3 bits (66), Expect = 3.2
Identities = 20/85 (23%), Positives = 42/85 (49%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E +KE + +K + K +E ++K ++ ++E+ + E+ +E K+K +E + +E +
Sbjct: 31 ELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRK 90
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
E R + +R R K R
Sbjct: 91 EYRELKEKRNEFNLGGRSIKSLERE 115
Score = 28.1 bits (63), Expect = 7.3
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ +K E +E + + + +E +KK + + +EK ++++K EE E EE E
Sbjct: 217 VELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYE 272
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 5. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K5, also called germinal
center kinase-related enzyme (GCKR), has been shown to
activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5
also facilitates Wnt signaling in B cells, and may
therefore be implicated in the control of cell fate,
proliferation, and polarity.
Length = 267
Score = 30.4 bits (68), Expect = 1.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSN 390
+ L YLHS +HRDIK N+L+ N
Sbjct: 116 LQGLAYLHSKGKMHRDIKGANILLTDN 142
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 30.9 bits (70), Expect = 1.4
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKK--KKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
K+++ ++ K++ KK K+KK+ K KK K ++ +KK + E + E + +
Sbjct: 191 KEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLESKLEAQSK 250
Query: 60 E 60
E
Sbjct: 251 E 251
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family
of 121-amino acid secretory proteins. Laps functions in
the regulation of neuronal cell adhesion and/or
movement and synapse attachment. Laps binds to the
ApC/EBP (Aplysia CCAAT/enhancer binding protein)
promoter and activates the transcription of ApC/EBP
mRNA.
Length = 124
Score = 29.4 bits (66), Expect = 1.4
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+KK KE + KK + K K E+ KEKKKKE E EE++E
Sbjct: 16 RKKNAPKELARLKKALGLIDGNVLMKDVKDIATVKPAEEVKEKKKKEGTESEEDDE 71
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 30.7 bits (69), Expect = 1.4
Identities = 16/70 (22%), Positives = 27/70 (38%)
Query: 34 KKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI 93
KK E K+ K+K+EE+ + +E+ R+ R R R+K + + I
Sbjct: 602 KKVLESPKEPSKEKKEEDEDTKEKAPLSDARKGRARGPARRKPATVAATEKLPEIPSVSI 661
Query: 94 SATRPDSTID 103
I
Sbjct: 662 IEIWSVWQIS 671
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 30.8 bits (70), Expect = 1.4
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
KK +K ++K K ++ K ++ +KK ++ + K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 28.9 bits (65), Expect = 5.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEK 40
KK +K ++K K +K K + +KK KK + K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAK 370
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 30.2 bits (68), Expect = 1.4
Identities = 8/54 (14%), Positives = 12/54 (22%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K K E + K KK+ K G ++
Sbjct: 106 ADASGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPAAAAAGADD 159
>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine
Kinase, Tie1. Protein Tyrosine Kinase (PTK) family;
Tie1; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie1 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. No specific ligand has been
identified for Tie1, although the angiopoietin, Ang-1,
binds to Tie1 through integrins at high concentrations.
In vivo studies of Tie1 show that it is critical in
vascular development.
Length = 297
Score = 30.4 bits (68), Expect = 1.5
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
V+ +SKI DFGL+R EE K M + V + A E L Y+ DVWS G
Sbjct: 150 VLVGENLASKIADFGLSRGEEVYVKKTMGRLPVR--WMAIESL-NYSVYTTKSDVWSFGV 206
Query: 175 IFAELL 180
+ E++
Sbjct: 207 LLWEIV 212
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 30.7 bits (70), Expect = 1.5
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E +KEK +E+ +E++KE + K+ K KK K + KK KE+ + + EE EE
Sbjct: 15 EAEKEKIEEEDEEEEKEGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEE 74
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic domain. Binding
to their ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 30.5 bits (69), Expect = 1.5
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 24/80 (30%)
Query: 116 MYQATYSSKICDFGLAR---------VEEPD----PNKAMTQEVVTQYYRAPEILMGARH 162
M +++ K+ DFGLAR V P K M E +
Sbjct: 130 MLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQ-----------K 178
Query: 163 YSAAVDVWSVGCIFAELLGR 182
++ DVWS G + EL+ R
Sbjct: 179 FTTKSDVWSFGVLLWELMTR 198
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 30.2 bits (69), Expect = 1.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 367 LKYLHSARILHRDIKPGNLLVN 388
L LH I+H DIK N+L +
Sbjct: 122 LNDLHKHNIIHNDIKLENVLYD 143
Score = 30.2 bits (69), Expect = 1.6
Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 35/149 (23%)
Query: 125 ICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGRRI 184
+CD+GL ++ + Y+ +PE + G +Y + D W+VG + ELL +
Sbjct: 151 LCDYGLCKII----GTPSCYDGTLDYF-SPEKIKG-HNYDVSFDWWAVGVLTYELLTGKH 204
Query: 185 LFQAQSPVQQLGLITDLLGTPTPEEMRHACDGAKCHMLRQTRKSQSLSSLYSLSSQATGE 244
F+ + ++L E + R+ + L + ++S
Sbjct: 205 PFK-EDEDEEL----------DLESLLK-------------RQQKKLPFIKNVSKN---- 236
Query: 245 AVHLLVQMLYFDPTKR-ISVNSALCHPYL 272
A + ML ++ R + N + HP+L
Sbjct: 237 ANDFVQSMLKYNINYRLTNYNEIIKHPFL 265
>gnl|CDD|219061 pfam06495, Transformer, Fruit fly transformer protein. This
family consists of transformer proteins from several
Drosophila species and also from Ceratitis capitata
(Mediterranean fruit fly). The transformer locus (tra)
produces an RNA processing protein that alternatively
splices the doublesex pre-mRNA in the sex determination
hierarchy of Drosophila melanogaster.
Length = 182
Score = 30.0 bits (67), Expect = 1.5
Identities = 16/85 (18%), Positives = 38/85 (44%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ +KKEK E +++++ + +++K + + + ++ + + E +
Sbjct: 14 RRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSAERNSCQ 73
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRK 86
R R R R R R R + SS +
Sbjct: 74 RRHRSRSRSRNRSDSRHRSTSSTER 98
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 30.0 bits (68), Expect = 1.5
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 22/84 (26%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK----------------------KKKEKKKKE 38
+ + E + + +++ EKK K K K++
Sbjct: 127 CPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQ 186
Query: 39 EKKKEKKKKEEEEGEEEEEGEEEG 62
EK +E + +E+E E++
Sbjct: 187 EKGAPDDDLDEYDYGDEDEEEDDE 210
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 30.7 bits (69), Expect = 1.5
Identities = 14/64 (21%), Positives = 26/64 (40%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
KKE K+ +E + EK K ++K+ + K + K E+ K+ + E
Sbjct: 22 KKEDKESGLREMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKGESD 81
Query: 63 RRRR 66
+
Sbjct: 82 KFVG 85
Score = 29.2 bits (65), Expect = 4.6
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKERE 78
KK++K+ ++ + EK K E +KE + + E + E+ + + K
Sbjct: 22 KKEDKESGLREMRVEKFSKME-EKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKGES 80
Query: 79 KKR 81
K
Sbjct: 81 DKF 83
Score = 28.8 bits (64), Expect = 5.9
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+ + +K K +EK+ E K + K ++ K+ K K E
Sbjct: 31 REMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKGES 80
>gnl|CDD|216381 pfam01237, Oxysterol_BP, Oxysterol-binding protein.
Length = 335
Score = 30.3 bits (69), Expect = 1.5
Identities = 12/23 (52%), Positives = 20/23 (86%)
Query: 32 KEKKKKEEKKKEKKKKEEEEGEE 54
+EK + EEK++E++K+ EE+GEE
Sbjct: 285 EEKLRLEEKQRERRKEREEKGEE 307
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 29.9 bits (67), Expect = 1.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
KKK++KKK+ EK + +K ++ + + EGE E +
Sbjct: 93 KKKEKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPED 129
Score = 29.1 bits (65), Expect = 3.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 25 KKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
KK++KKKKE +K + +K + E + E EG E
Sbjct: 93 KKKEKKKKETEKPAQ--GGEKPDQGPEAKGEGEGHEPE 128
>gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated.
Length = 740
Score = 30.5 bits (69), Expect = 1.6
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+KK+KE+K ++ KK+K K K+ K KK E+ E E
Sbjct: 669 QKKQKEEKAQQPKKEKPKSIKDIKGIGKKTAEKLEEAGITTVEA 712
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Traf2- and Nck-interacting
kinase. Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to mitogen-activated protein kinase (MAPK),
kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks
participate in some MAPK signaling pathways by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). TNIK is an effector of Rap2, a small GTP-binding
protein from the Ras family. TNIK specifically activates
the c-Jun N-terminal kinase (JNK) pathway and plays a
role in regulating the actin cytoskeleton.
Length = 272
Score = 30.5 bits (68), Expect = 1.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L +LH +++HRDIK N+L+ N +K
Sbjct: 121 LRGLSHLHQHKVIHRDIKGQNVLLTENAEVK 151
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
beta. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, beta isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
The PKC beta isoforms (I and II), generated by
alternative splicing of a single gene, are
preferentially activated by hyperglycemia-induced DAG in
retinal tissues. This is implicated in diabetic
microangiopathy such as ischemia, neovascularization,
and abnormal vasodilator function. PKC-beta also plays
an important role in VEGF signaling. In addition,
glucose regulates proliferation in retinal endothelial
cells via PKC-betaI. PKC-beta is also being explored as
a therapeutic target in cancer. It contributes to tumor
formation and is involved in the tumor host mechanisms
of inflammation and angiogenesis.
Length = 323
Score = 30.4 bits (68), Expect = 1.6
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVV--TQYYRAPEILMGARHYSAAVDVWSV 172
VM + KI DFG+ + D +T + T Y APEI+ + Y +VD W+
Sbjct: 132 VMLDSEGHIKIADFGMCKENMWD---GVTTKTFCGTPDYIAPEII-AYQPYGKSVDWWAF 187
Query: 173 GCIFAELLGRRILFQAQ 189
G + E+L + F+ +
Sbjct: 188 GVLLYEMLAGQAPFEGE 204
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 30.2 bits (68), Expect = 1.6
Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE-KKKKEEEEGEEEEEGE 59
++K+E++ ++ + + +E+++ K+++ E+ E E+E GE+ E+GE
Sbjct: 211 DQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGE 270
Query: 60 EE 61
+
Sbjct: 271 TK 272
Score = 27.9 bits (62), Expect = 8.7
Identities = 19/92 (20%), Positives = 38/92 (41%)
Query: 32 KEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLS 91
K+ ++E+++ ++ E E E RRR R+ + ++ E+ + + S
Sbjct: 207 TSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDS 266
Query: 92 EISATRPDSTIDGYQARQPTRQLVMYQATYSS 123
E T+P+S I + + M SS
Sbjct: 267 EDGETKPESYITSEYIERISEIRKMKDERLSS 298
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 30.4 bits (69), Expect = 1.6
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 6 KKKEKKKEKKKEKKKKEKKKK-------------EKKKKKEKKKKEEKKKEKKKKEEEEG 52
+K + ++ KE+ +K K E + K K KEE ++ KK +++
Sbjct: 286 FRKNEFEKYDKEEDEKPLFLKWKLPISIVRETYYEVQDKVVKLTKEEAVEKGKKLAKKKL 345
Query: 53 EEE 55
E+E
Sbjct: 346 EKE 348
Score = 28.9 bits (65), Expect = 5.2
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
E E + + K K+E +K KK +KK +KE K + K EK E E
Sbjct: 316 ETYYEVQDKVVKLTKEEAVEKGKKLAKKKLEKEIDKDAKIKDEKVLHERVEN 367
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 30.0 bits (68), Expect = 1.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSN 390
++YL S R +HRD+ N+L+ S+
Sbjct: 108 NGMRYLESKRFIHRDLAARNILLASD 133
Score = 30.0 bits (68), Expect = 1.8
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 124 KICDFGLAR-VEEPDPNKAMT-QEVVTQYYRAPEILMGARHYSAAVDVWSVG 173
KI DFGL R + + + + M V + APE L R +S A DVW G
Sbjct: 137 KIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLR-TRTFSHASDVWMFG 187
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.8 bits (70), Expect = 1.7
Identities = 19/86 (22%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ E+ + + ++ ++E ++ E++ + + E + + E+ +E+++ EE E E E
Sbjct: 474 RERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIE 533
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRK 86
E +R R R R E E + +R+
Sbjct: 534 E-KRERAEELRERAAELEAEAEEKRE 558
Score = 29.2 bits (66), Expect = 4.2
Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE-----------E 49
++ E+ +E+ E + E ++K + E +++ E+ ++E + K E
Sbjct: 536 RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR 595
Query: 50 EEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQ 109
+ E+E R R +R + E++ K + E+ A ++ I+ +AR+
Sbjct: 596 TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE--EARE 653
Query: 110 PTRQLVMYQATYSSKI 125
+ Y K+
Sbjct: 654 DKERAEEYLEQVEEKL 669
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 30.0 bits (68), Expect = 1.7
Identities = 13/101 (12%), Positives = 34/101 (33%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + + + E + + + + + E ++ +E+ K+ E+K K E E E +
Sbjct: 41 EALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQI 100
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDST 101
R + E ++ + + +
Sbjct: 101 AKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141
Score = 29.6 bits (67), Expect = 2.2
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK--KEEKKKEKKKKEEEEGEEEEEGE 59
+K++ + + KE +K KK + + + K E + E+ + + + E E E E +
Sbjct: 17 LEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK 76
Score = 29.3 bits (66), Expect = 3.3
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + K++ E + + +E +K EK+ + K++ E +K + E EE E E
Sbjct: 97 EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156
Query: 61 EGRRRRRRRRR 71
EG+ +R
Sbjct: 157 EGQELSSKREE 167
Score = 28.1 bits (63), Expect = 6.8
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ +K EK+ E K+ ++ EK + + + EE+ E +++ +E + EE +E+
Sbjct: 117 EEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.
Length = 629
Score = 30.6 bits (69), Expect = 1.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 52 GEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKP 87
GE E G +GRR RR R R+ RR
Sbjct: 591 GERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFG 626
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777). This is
a family of eukaryotic proteins of unknown function.
Some of the proteins in this family are putative nucleic
acid binding proteins.
Length = 158
Score = 29.5 bits (66), Expect = 1.7
Identities = 14/100 (14%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKK-KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+ + ++ +++ + + + ++E+++ + + ++++++++ + + +
Sbjct: 4 SRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRS 63
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPD 99
RRR R+R R K RE K+ R+K K ++ +
Sbjct: 64 RSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDE 103
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 29.2 bits (66), Expect = 1.7
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
KK EK+++E +K+ +K+ E+ KKEE+ +E K
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELREAK 110
Score = 28.8 bits (65), Expect = 2.8
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
KK EK++++ +K+ E++ E+ KKEEE E +
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELREAK 110
Score = 28.0 bits (63), Expect = 4.5
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
KK EK+++E +K+ EK+ E+ KKE++ +E +
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELREAK 110
Score = 27.6 bits (62), Expect = 7.0
Identities = 18/70 (25%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEK----KKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ ++ + + +K K+ + + K+ +E KK E++++E +K+ E+E E+ + EEE
Sbjct: 46 AREARRWQLRTQKIMKDTQLRAKRLMREMLLFWKKNEKEERELRKRAEKEALEQAKKEEE 105
Query: 62 GRRRRRRRRR 71
R +R++R+
Sbjct: 106 LREAKRQQRK 115
>gnl|CDD|218454 pfam05132, RNA_pol_Rpc4, RNA polymerase III RPC4. Specific
subunit for Pol III, the tRNA specific polymerase.
Length = 131
Score = 29.2 bits (66), Expect = 1.7
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
E K +++ + ++ ++ +KKE KK+ ++ E+ EG
Sbjct: 20 PAEVKPTKEETVKTEQAEDGEKKESKKESSAEETAEDKPCTLRDLPEGY 68
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesised by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesise cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 30.5 bits (69), Expect = 1.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 29 KKKKEKKKKEEKKKEKKKKEEEEG----EEEEEGEEEGRRRRRRRRRRRKK 75
++KK K + KKK+ K+KE E E+ +EG+E+ + + K+
Sbjct: 312 RRKKPKSASKAKKKDSKRKESEAPIFNLEDIDEGDEDEKSSLMSQLSLEKR 362
Score = 30.5 bits (69), Expect = 1.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
++K+ K K KKK+ K+KE + ++ +EG+E+E
Sbjct: 312 RRKKPKSASKAKKKDSKRKESEAPIFNLEDIDEGDEDE 349
Score = 30.5 bits (69), Expect = 1.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++K+ K + KKK+ K+KE + + +E E+E
Sbjct: 312 RRKKPKSASKAKKKDSKRKESEAPIFNLEDIDEGDEDE 349
>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b. This model
describes the F1/F0 ATP synthase b subunit in bacteria
only. Scoring just below the trusted cutoff are the
N-terminal domains of Mycobacterial b/delta fusion
proteins and a subunit from an archaeon, Methanosarcina
barkeri, in which the ATP synthase homolog differs in
architecture and is not experimentally confirmed. This
model helps resolve b from the related b' subunit.
Within the family is an example from a
sodium-translocating rather than proton-translocating
ATP synthase [Energy metabolism, ATP-proton motive force
interconversion].
Length = 147
Score = 29.3 bits (66), Expect = 1.7
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE-----KKKKEEEEGEEEEE 57
+ +KK E+ KKE +KK + K+ +++ +E K+ E E + E
Sbjct: 25 ETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAE 84
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
EE + + + R + E+E+ R RK
Sbjct: 85 AREEREKIKAQARAEIEAEKEQAREELRK 113
>gnl|CDD|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020). This
family of fungal proteins is conserved towards the
C-terminus of HMG domains. The function is not known.
Length = 49
Score = 27.6 bits (61), Expect = 1.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
++K+K +E E+ K + KKK +KK +E KEK ++E
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDAYIDDE 48
Score = 26.0 bits (57), Expect = 5.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
++ KKK ++ ++ K+ + KKK +KK K+ +E++ ++E
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDAYIDDE 48
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 30.4 bits (68), Expect = 1.8
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K K + K K + E + +KK KE KK K
Sbjct: 261 ALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKM 299
Score = 29.6 bits (66), Expect = 2.6
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KK++ + + KE++KE KK K ++E + + + K E K K E E E
Sbjct: 226 KKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAV 285
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI-SATRPDSTID 103
++ + ++ K E++ +++ + + A D +D
Sbjct: 286 KKKAKEVMKKALKMEKKAIKNAAKDADYFGDADKAEHIDEDVD 328
Score = 28.8 bits (64), Expect = 4.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+ K E K + + E + KKK KE KK K ++K
Sbjct: 259 LAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKK 302
>gnl|CDD|190975 pfam04410, Gar1, Gar1/Naf1 RNA binding region. Gar1 is a small
nucleolar RNP that is required for pre-mRNA processing
and pseudouridylation. It is co-immunoprecipitated with
the H/ACA families of snoRNAs. This family represents
the conserved central region of Gar1. This region is
necessary and sufficient for normal cell growth, and
specifically binds two snoRNAs snR10 and snR30. This
region is also necessary for nucleolar targeting, and it
is thought that the protein is co-transported to the
nucleolus as part of a nucleoprotein complex. In humans,
Gar1 is also component of telomerase in vivo. Naf1 is an
essentail protein that plays a role in ribosome
biogenesis, modification of spliceosomal small nuclear
RNAs and telomere synthesis, and is homologous to Gar1.
Length = 154
Score = 29.6 bits (67), Expect = 1.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 34 KKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
+ K++K + +EE EEE GE +R RK ++
Sbjct: 111 QPLKQQKGTDASNGHDEELPEEERGEFSDDEAEAEAKRGRKGKK 154
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 29.1 bits (66), Expect = 1.8
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K+ KK KK++ +K +K+ KK ++++ +KK++++K K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 27.6 bits (62), Expect = 6.3
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK 37
+K++++K +K+ KK K+++ KKKE+K K + KKK
Sbjct: 101 KKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 27.6 bits (62), Expect = 7.4
Identities = 14/40 (35%), Positives = 29/40 (72%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
KK +K++++K +KK +K K+++ KK+E+K + K K++
Sbjct: 98 KKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|222791 PHA00431, PHA00431, internal virion protein C.
Length = 746
Score = 30.5 bits (69), Expect = 1.8
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 42 KEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRR 85
+E ++K EE E+ + R + R++ REK++ +
Sbjct: 695 QENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
Score = 28.6 bits (64), Expect = 8.1
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 32 KEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRS 82
KE K ++ ++K EE + ++ + + R +E+ K+ S
Sbjct: 687 KELLSKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTS 737
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 30.7 bits (69), Expect = 1.9
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
++ K+++ +++ + +K+ KK+KKK+EEE+ EE+ +
Sbjct: 2 VDESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLK 46
Score = 29.9 bits (67), Expect = 2.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
E KK++ E+ + +K+ KK KKKEEEE EE+ +G
Sbjct: 2 VDESDKKQQTIDEQSQISPEKQTPNKKD--KKKEEEEQLSEEDAMLKG 47
>gnl|CDD|187861 cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as TM1802 family.
Length = 579
Score = 30.4 bits (69), Expect = 1.9
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE--EKKKEKKKKEEEEGEEEE 56
K + KK KK +K + +K+ K K K+ EK EK K+ ++ + E
Sbjct: 88 YLLKTTEPLNKKIKKWFEKSYLLLESKKEILKLKNIKDVLEKNIEKILKDIQDLKPGE 145
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 30.2 bits (68), Expect = 1.9
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 20 KKEKKKKEKKKKKEKKKKEEKK-KEKKKKEEEEGEEEEEGEEE 61
K +K E+ ++ EEK+ KE +++EE E EEEEE E+E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 28.6 bits (64), Expect = 5.7
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+ K ++ +K+ + + K K K+ +E+ ++ EE+E +E+EE EE
Sbjct: 214 KNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEE 273
Query: 61 EG 62
Sbjct: 274 TE 275
>gnl|CDD|147845 pfam05914, RIB43A, RIB43A. This family consists of several
RIB43A-like eukaryotic proteins. Ciliary and flagellar
microtubules contain a specialised set of
protofilaments, termed ribbons, that are composed of
tubulin and several associated proteins. RIB43A was
first characterized in the unicellular biflagellate,
Chlamydomonas reinhardtii although highly related
sequences are present in several higher eukaryotes
including humans. The function of this protein is
unknown although the structure of RIB43A and its
association with the specialised protofilament ribbons
and with basal bodies is relevant to the proposed role
of ribbons in forming and stabilising doublet and
triplet microtubules and in organising their
three-dimensional structure. Human RIB43A homologues
could represent a structural requirement in centriole
replication in dividing cells.
Length = 379
Score = 30.4 bits (69), Expect = 1.9
Identities = 14/89 (15%), Positives = 44/89 (49%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRR 71
++ +K +E++ +EK++++E+++ EK+ +++ + E +E R+ R++
Sbjct: 280 EQLAAIRKGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQL 339
Query: 72 RRKKEREKKRSSRRKPFKLSEISATRPDS 100
++ K ++ + E+ P +
Sbjct: 340 DSANQQLAKEQKAQQEYLNKELYTNAPTA 368
>gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal
protein S1 domain) [Translation, ribosomal structure and
biogenesis].
Length = 129
Score = 29.2 bits (66), Expect = 1.9
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
E++ EK+ K + K K+ + + K ++ K++ KKK G
Sbjct: 77 EEEPEKQHRKPRFSKSRPKEGFETLLSRLLKWIEESLSTLKRQTKKKRGGRG 128
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting
Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are
mainly expressed in hematopoietic cells and are involved
in the regulation of cell adhesion and motility.
Mutations in PSTPIPs have been shown to cause
autoinflammatory disorders. PSTPIP1 contains an
N-terminal F-BAR domain, PEST motifs, and a C-terminal
SH3 domain, while PSTPIP2 contains only the N-terminal
F-BAR domain. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 239
Score = 29.8 bits (67), Expect = 1.9
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
++K+K++ KK E ++ +K KK+ KK K KK E+K +EK K E+
Sbjct: 93 FREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQ 141
Score = 28.6 bits (64), Expect = 5.2
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
EK +E ++++K+E+KK + ++ +K KK+ +K K +K E+K +E+++ E+
Sbjct: 88 EKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQ 141
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 30.1 bits (68), Expect = 1.9
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 3/110 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK---EKKKKEEEEGEEEEE 57
+KK ++K+ E K E + + E + +K EK KE E+
Sbjct: 156 DKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAA 215
Query: 58 GEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQA 107
EE+ K+E K +++ + + +A +P + + A
Sbjct: 216 LEEQKALAEAAAAEAAKQEAAAKAAAQEQAALQAAATAAQPSAVTESASA 265
Score = 29.7 bits (67), Expect = 2.3
Identities = 16/105 (15%), Positives = 34/105 (32%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K++KK ++K+ E K + + + + + +K EK +E E
Sbjct: 154 KEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEK 213
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQA 107
++ E + E +A + +T A
Sbjct: 214 AALEEQKALAEAAAAEAAKQEAAAKAAAQEQAALQAAATAAQPSA 258
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved
in a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 28.7 bits (65), Expect = 2.0
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 1 EKKKEKKKEKKKEKKKEKKKK-------EKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
KKE + ++++K+K+ KK E+KK ++ K+ +KK EE EK+ K+ +E
Sbjct: 32 ALKKELEDAERRKKRKKMAKKYHMVRFFERKKATRRLKQLEKKLEETSDEKEIKDLKE 89
Score = 27.6 bits (62), Expect = 5.3
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKK--KKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
EK++ + KK+ + E++KK KK KK + ++KK ++ ++ +K+ EE +E+E
Sbjct: 25 EKERALEALKKELEDAERRKKRKKMAKKYHMVRFFERKKATRRLKQLEKKLEETSDEKEI 84
Query: 59 EE 60
++
Sbjct: 85 KD 86
Score = 27.6 bits (62), Expect = 5.6
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKK-----EKKKKEKKKKK-EKKKKEEKKKEKKKKEEEE 51
+K+ E + +KK KK KK E+KK ++ K+ EKK +E +++ K +E+
Sbjct: 34 KKELEDAERRKKRKKMAKKYHMVRFFERKKATRRLKQLEKKLEETSDEKEIKDLKEQ 90
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 30.6 bits (69), Expect = 2.0
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 20 KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+K+KKKK+ K+KK+KK +E K+ + EEG E E+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEK 724
Score = 29.1 bits (65), Expect = 4.7
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKK 75
+KKK+KKK KEKKKK+ ++ K+ E EE EG + + + KK
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEKK 736
Score = 28.3 bits (63), Expect = 8.8
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKK 37
+K+KKKK+ K+K+KKK +E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.3 bits (63), Expect = 9.0
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 18 KKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KKKK+KK KEKKKKK ++ ++ + +E EG E+ E
Sbjct: 685 KKKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSE 727
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 30.3 bits (68), Expect = 2.0
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K K K+K + E+ +E+K K K K K + K+K+E E EEE
Sbjct: 68 KAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAA 127
Query: 62 GRRRRRRRRRRRKKEREKKR 81
+ + + ++KR
Sbjct: 128 KAKAAAAAKAKAAALAKQKR 147
Score = 28.4 bits (63), Expect = 6.5
Identities = 16/94 (17%), Positives = 38/94 (40%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K+K + E+ E++K K K + K K K++ + E+ +EE+ + +
Sbjct: 76 KQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAA 135
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISA 95
+ +++R+ E + ++ A
Sbjct: 136 KAKAAALAKQKREGTEEVTEEEEETDKEKAKAKA 169
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 30.4 bits (69), Expect = 2.0
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
+K KK KK K EK ++E K E++ + EE + + GR
Sbjct: 11 EKISKKAAKKAAAKAEKLRREATAKAAAASLEDEDDPLASNYGDVPLEELQSKVTGRE 68
Score = 29.3 bits (66), Expect = 4.0
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+K +K KK K E+ ++E K E+E+
Sbjct: 9 SGEKISKKAAKKAAAKAEKLRREATAKAAAASLEDEDDP 47
Score = 28.9 bits (65), Expect = 5.5
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
E+ EK K+ KK K ++ +++ K E+E+
Sbjct: 7 EESGEKISKKAAKKAAAKAEKLRREATAKAAAASLEDEDDP 47
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 30.3 bits (69), Expect = 2.0
Identities = 16/67 (23%), Positives = 25/67 (37%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
+E + + + +E K E K + +KEK+ EE E EG R R
Sbjct: 1 EELDALDEILGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDR 60
Query: 68 RRRRRRK 74
R +
Sbjct: 61 LREEIER 67
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 30.0 bits (68), Expect = 2.0
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
KKK++ KE++ KE ++ +K +K KK+K+ K KEK +K
Sbjct: 234 KKKKQTKEERIATAKEGREDREKFGSRKGKKDKEGKSTTNKEKARK 279
Score = 28.9 bits (65), Expect = 5.1
Identities = 16/90 (17%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK-----------KKEE 49
E ++EK + KK K+ ++ ++ +E+ ++E+ + E++K + K +
Sbjct: 133 EDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATTRILTPADFAKIQ 192
Query: 50 EEGEEEEEGEEEGRRRRRRRRRRRKKEREK 79
E E+ + G + +RR + ++ ++
Sbjct: 193 ELRLEKGVDKALGGKLKRRDKDAPERHSDE 222
>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 1. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK1 is preferentially expressed in the liver,
lung, spleen, testes, and kidney. It mediates signaling
from Rho to the actin cytoskeleton. It is implicated in
the development of cardiac fibrosis, cardiomyocyte
apoptosis, and hyperglycemia. Mice deficient with ROCK1
display eyelids open at birth (EOB) and omphalocele
phenotypes due to the disorganization of actin filaments
in the eyelids and the umbilical ring.
Length = 371
Score = 30.0 bits (67), Expect = 2.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSNCILK 394
+L +HS +HRD+KP N+L++ + LK
Sbjct: 154 ALDAIHSMGFIHRDVKPDNMLLDKSGHLK 182
Score = 30.0 bits (67), Expect = 2.4
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILM---GARHYSAAVDVWSVGCIFAELL 180
K+ DFG + V T Y +PE+L G +Y D WSVG E+L
Sbjct: 182 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 241
Query: 181 GRRILFQAQSPV 192
F A S V
Sbjct: 242 VGDTPFYADSLV 253
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 30.0 bits (69), Expect = 2.1
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 1 EKKKEKKK--EKKKEKKKEKKKKEKKKKEKKKKKEKKKKE--EKKKEKKKKEEEEGEEEE 56
E+++E + E+ + ++ K+ + K K + E E E K+E K E E E E
Sbjct: 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEA 94
Query: 57 E 57
E
Sbjct: 95 E 95
>gnl|CDD|220839 pfam10661, EssA, WXG100 protein secretion system (Wss), protein
EssA. The WXG100 protein secretion system (Wss) is
responsible for the secretion of WXG100 proteins
(pfam06013) such as ESAT-6 and CFP-10 in Mycobacterium
tuberculosis or EsxA and EsxB in Staphylococcus aureus.
In S. aureus, the Wss seems to be encoded by a locus of
eight CDS, called ess (eSAT-6 secretion system). This
locus encodes, amongst several other proteins, EssA, a
protein predicted to possess one transmembrane domain.
Due to its predicted membrane location and its absolute
requirement for WXG100 protein secretion, it has been
speculated that EssA could form a secretion apparatus
in conjunction with the polytopic membrane protein
EsaA, YukC (pfam10140) and YukAB, which is a
membrane-bound ATPase containing Ftsk/SpoIIIE domains
(pfam01580) called EssC in S. aureus and Snm1/Snm2 in
Mycobacterium tuberculosis. Proteins homologous to
EssA, YukC, EsaA and YukD seem absent from
mycobacteria.
Length = 145
Score = 29.1 bits (65), Expect = 2.1
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+ +EK ++K +E + +K E E +++ KKK E+K+ + + E++E
Sbjct: 24 KTDQEKNEKKLRETELDKLGIELFTTETEEEINKKKNAEQKEMEDIENSLFSEDKEGNV 82
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 30.2 bits (69), Expect = 2.1
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
E++ ++ K + E+K+K+K+KK+ KKKK K + + K K+
Sbjct: 382 EQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKE 427
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 29.8 bits (67), Expect = 2.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ + YL S + +HRD+ N LV+ +K
Sbjct: 111 EGMAYLESKQFIHRDLAARNCLVDDQGCVK 140
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 30.4 bits (69), Expect = 2.1
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE-EKKKEKKKKEEEEGEEEEEGE 59
EK +E E+ ++ +E + EKK K + K EK K + +K +K K EE + +
Sbjct: 177 EKFEEAINEEVEKAAQEALEAEKKLKAESPKVEKPKPLFDGQKGRKIKSTEEIKPLIKIN 236
Query: 60 EEGRR 64
EE R
Sbjct: 237 EEETR 241
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 30.5 bits (69), Expect = 2.1
Identities = 9/63 (14%), Positives = 23/63 (36%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSS 83
K + +K + KE K+ E + +E + + + +KE +
Sbjct: 144 KPRGRKPEINVALKELKELEAEIREVQLKTRTWKDLVKALDEAEEELANLRKELRQLEKE 203
Query: 84 RRK 86
+++
Sbjct: 204 KQR 206
Score = 30.1 bits (68), Expect = 2.5
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 4 KEKKKEKKKEKKKEKKKKE-KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
E +KE + K +K E ++ K+ E + +E + K + K+ + +E E E
Sbjct: 133 DELEKEADELWKPRGRKPEINVALKELKELEAEIREVQLKTRTWKDLVKALDEAEEELAN 192
Query: 63 RRRRRR--RRRRRKKEREKK 80
R+ R + +++ ER ++
Sbjct: 193 LRKELRQLEKEKQRLERLRR 212
>gnl|CDD|100810 PRK01194, PRK01194, V-type ATP synthase subunit E; Provisional.
Length = 185
Score = 29.5 bits (66), Expect = 2.1
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
EKKKE E K +K +K+ + K + K+ EKK + E + KK ++
Sbjct: 16 EKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDK 65
Score = 27.6 bits (61), Expect = 9.6
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK-EEKKKEKKKKEEEEGE-----EEEEGE 59
K EK +E+KK++ E K+ +K +KE K + K+ +KK E ++
Sbjct: 8 KDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKAN 67
Query: 60 EEGRRRRRRRRR 71
E R +R +RR
Sbjct: 68 IEARSIKREKRR 79
>gnl|CDD|171510 PRK12452, PRK12452, cardiolipin synthetase; Reviewed.
Length = 509
Score = 30.3 bits (68), Expect = 2.2
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRP 98
GR R RR++ + E ++K + E+S P
Sbjct: 80 GRSRWRRKKHLHRSEEQRKLFREILEGRRLELSLKVP 116
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents
the seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is
recognized by the pfam model tRNA-synt_2b. The
seryl-tRNA synthetases of two archaeal species,
Methanococcus jannaschii and Methanobacterium
thermoautotrophicum, differ considerably and are
included in a different model [Protein synthesis, tRNA
aminoacylation].
Length = 418
Score = 30.0 bits (68), Expect = 2.2
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E+KK + ++ + K+ E K+ K K +KK K E+ K++ K+ +EE E +
Sbjct: 36 DDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKA 94
Score = 28.9 bits (65), Expect = 5.0
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK + E+ + K+ E K+ K K +KK K ++ K+E K+ K++ E + E
Sbjct: 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAE 98
Score = 28.9 bits (65), Expect = 6.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE-KKKKEEEEGEEEEEGEE 60
+ KK + E+ + K+ + K+ K K ++K K EE KKE K+ KEE
Sbjct: 36 DDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKAL 95
Query: 61 E 61
E
Sbjct: 96 E 96
Score = 28.5 bits (64), Expect = 7.4
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ K + K+ K K +KK K ++ KKE K+ +E+ E + E ++
Sbjct: 50 QAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus
where it induces apoptosis. In chronic myelogenous
leukemia (CML) patients, an aberrant translocation
results in the replacement of the first exon of Abl with
the BCR (breakpoint cluster region) gene. The resulting
BCR-Abl fusion protein is constitutively active and
associates into tetramers, resulting in a hyperactive
kinase sending a continuous signal. This leads to
uncontrolled proliferation, morphological transformation
and anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used
in the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12,
is associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 29.8 bits (67), Expect = 2.2
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAEL 179
K+ DFGL+R+ D A + APE L +S DVW+ G + E+
Sbjct: 144 KVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESL-AYNKFSIKSDVWAFGVLLWEI 198
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 28.7 bits (65), Expect = 2.2
Identities = 19/50 (38%), Positives = 35/50 (70%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
+++ +KKE++ ++ K K K+ E K+++ +KK EE+KK +K+KEEE
Sbjct: 33 REEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRKEKEEE 82
Score = 27.2 bits (61), Expect = 7.6
Identities = 20/86 (23%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK-----EEKKKEKKKKEEEEGEEE 55
+ K+E+ + +++ K+ +++ EKK++E ++ K K E K++ +KK EEE +
Sbjct: 17 DAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLR 76
Query: 56 EEGEEEGRRRRRRRRRRRKKEREKKR 81
+E EEE + + + + + +
Sbjct: 77 KEKEEEIKELKAELEELKAEIEKLEE 102
>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 1. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK1
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK1, also called rhodopsin kinase,
belongs to the visual group of GRKs and is expressed in
retinal cells. It phosphorylates rhodopsin in rod cells,
which leads to termination of the phototransduction
cascade. Mutations in GRK1 are associated to a
recessively inherited form of stationary nightblindness
called Oguchi disease.
Length = 280
Score = 29.8 bits (67), Expect = 2.3
Identities = 11/24 (45%), Positives = 21/24 (87%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSN 390
L++LH RI++RD+KP N+L++++
Sbjct: 110 LEHLHQRRIIYRDLKPENVLLDND 133
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 30.0 bits (68), Expect = 2.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK 34
+K++E KK+ K E++ K K ++ KKK
Sbjct: 271 DKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 28.9 bits (65), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK 37
K +K++E KK+ K E++ K K K+ KKK
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKA 303
>gnl|CDD|215822 pfam00257, Dehydrin, Dehydrin.
Length = 137
Score = 29.0 bits (65), Expect = 2.4
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 15/59 (25%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK---------------KKKEKKKKEEKKKEK 44
+ + ++K+ KEK KEK K + +EKK K +K KEK
Sbjct: 72 DGQGGERKKGIKEKIKEKLPGGHGGKGQATTTTTTGTGGGYGQHGHEEKKGKMDKIKEK 130
>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family. Members of this family are
short proteins that are rich in aspartate, glutamate,
lysine and arginine. Although the function of these
proteins is unknown, they are found to be ubiquitously
expressed.
Length = 38
Score = 26.8 bits (60), Expect = 2.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
++E+ +E+ K+ KK+KK K + K K E
Sbjct: 6 QREQARERNAKKAAKKKKKGAKSQLKAAAKALE 38
>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase
component YidC; Provisional.
Length = 329
Score = 29.7 bits (67), Expect = 2.5
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 29 KKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRS 82
++ +K K + + K E + E E+ +R+ +R++ +++ R K++
Sbjct: 271 ERLAKKGKDHGESEGKVVAPEGAVAQTTEVREQTKRQTVQRQQPKRQSRAKRQK 324
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase B. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase B
(TrkB); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkB is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkB
to its ligands, brain-derived neurotrophic factor (BDNF)
or neurotrophin 4 (NT4), results in receptor
oligomerization and activation of the catalytic domain.
TrkB is broadly expressed in the nervous system and in
some non-neural tissues. It plays important roles in
cell proliferation, differentiation, and survival.
BDNF/Trk signaling plays a key role in regulating
activity-dependent synaptic plasticity. TrkB also
contributes to protection against gp120-induced neuronal
cell death. TrkB overexpression is associated with poor
prognosis in neuroblastoma (NB) and other human cancers.
It acts as a suppressor of anoikis (detachment-induced
apoptosis) and contributes to tumor metastasis.
Length = 288
Score = 29.7 bits (66), Expect = 2.5
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL-- 180
KI DFG++R V D + ++ + PE +M R ++ DVWS+G + E+
Sbjct: 160 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM-YRKFTTESDVWSLGVVLWEIFTY 218
Query: 181 GRRILFQ 187
G++ +Q
Sbjct: 219 GKQPWYQ 225
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 26.9 bits (60), Expect = 2.5
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 42 KEKKKKEEEEGEEEEEGEEEGRRRR 66
+E+K+++EEE E+EEEGEE+ +R
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor. The ribosome recycling
factor (RRF / ribosome release factor) dissociates the
ribosome from the mRNA after termination of translation,
and is essential bacterial growth. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis.
Length = 165
Score = 29.0 bits (66), Expect = 2.5
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K KK EK KE +++ K+ +K+ +K K KK +E K+K+K
Sbjct: 118 NDKLKKLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEK 162
Score = 27.8 bits (63), Expect = 6.6
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK-KKKEEE 50
K KK EK KE + E K+ EK+ +K K +K E KKKE+E
Sbjct: 118 NDKLKKLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEKE 163
>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine
Kinase, Tie2. Protein Tyrosine Kinase (PTK) family;
Tie2; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie2 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie2 is expressed
mainly in endothelial cells and hematopoietic stem
cells. It is also found in a subset of tumor-associated
monocytes and eosinophils. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2. The binding of Ang-1
to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. Tie2 signaling plays key regulatory roles in
vascular integrity and quiescence, and in inflammation.
Length = 303
Score = 29.6 bits (66), Expect = 2.5
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGC 174
++ Y +KI DFGL+R +E K M + V + A E L Y+ DVWS G
Sbjct: 155 ILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVR--WMAIESL-NYSVYTTNSDVWSYGV 211
Query: 175 IFAELL 180
+ E++
Sbjct: 212 LLWEIV 217
>gnl|CDD|153283 cd07599, BAR_Rvs167p, The Bin/Amphiphysin/Rvs (BAR) domain of
Saccharomyces cerevisiae Reduced viability upon
starvation protein 167 and similar proteins. BAR
domains are dimerization, lipid binding and curvature
sensing modules found in many different proteins with
diverse functions. This subfamily is composed of fungal
proteins with similarity to Saccharomyces cerevisiae
Reduced viability upon starvation protein 167 (Rvs167p)
and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S.
cerevisiae Rvs167p plays a role in regulation of the
actin cytoskeleton, endocytosis, and sporulation. It
forms a heterodimer with another BAR domain protein
Rvs161p. Rvs161p and Rvs167p share common functions but
are not interchangeable. Their BAR domains cannot be
replaced with each other and the overexpression of one
cannot suppress the mutant phenotypes of the other.
Rvs167p also interacts with the GTPase activating
protein (GAP) Gyp5p, which is involved in ER to Golgi
vesicle trafficking. BAR domains form dimers that bind
to membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 216
Score = 29.5 bits (67), Expect = 2.6
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 7 KKEKKKEKKKEKKKKE------KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
KK +K KK++ KK + K K +KKKE K+EK+ K +++ EE +EE
Sbjct: 110 KKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEE 164
Score = 28.0 bits (63), Expect = 7.2
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 2 KKKEKKKEKKK------EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+K KK++ KK + K K ++KK+ K +K+ K E K +E K++
Sbjct: 113 RKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEE 164
>gnl|CDD|216403 pfam01271, Granin, Granin (chromogranin or secretogranin).
Length = 585
Score = 30.0 bits (67), Expect = 2.6
Identities = 19/82 (23%), Positives = 37/82 (45%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E K + K+K ++ ++++K + E ++ E + E EE++ +E
Sbjct: 179 EVGKLDGQSKQKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQE 238
Query: 61 EGRRRRRRRRRRRKKEREKKRS 82
E +R + R + R E KRS
Sbjct: 239 EVKRSKERTHKGRSLPDESKRS 260
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 29.9 bits (68), Expect = 2.6
Identities = 29/152 (19%), Positives = 46/152 (30%), Gaps = 26/152 (17%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
E + K ++ K K KK KK + EE+K+ E + E E+ E
Sbjct: 18 ELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITE 77
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQLVMYQAT 120
E E R F+ + D T+ G + + +
Sbjct: 78 ------------LTPELEAAGLWERLAFE-------KIDVTLPGRRIYPGSLHPLTQTIE 118
Query: 121 YSSKICDFGLARVEEPDPNKAMTQEVVTQYYR 152
I G+ E P E+ T +Y
Sbjct: 119 EIEDIF-LGMGFTEVEGP------EIETDFYN 143
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 29.4 bits (66), Expect = 2.6
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 1 EKKKEKKKEKKKE------KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E+ K+K +E +K+ K+ K EK++ E KK++ ++ K E K+KKK ++E+
Sbjct: 21 EELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEK 77
Score = 28.3 bits (63), Expect = 7.6
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 2 KKKEKKKEKKK-EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K+ K EK++ E KK++ ++ K + KKKKK KK+K + + + KK
Sbjct: 41 KRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEKVDVRVKVVKK 87
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 29.2 bits (66), Expect = 2.6
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKK------KKEEKKKEKKKKEE 49
E++ E +K + E+ ++K ++ +KKEK+ + EK+ K E + K +EE
Sbjct: 18 EEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKNEARLKVLNAREE 72
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 29.6 bits (67), Expect = 2.6
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
+E E+ KE+ K + K K + KK++K ++ E+
Sbjct: 80 REYIMERFKERGTGKGRPVPKPKFEFKKEKKVIEKLPFCER 120
Score = 28.8 bits (65), Expect = 5.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKK 30
E+ KE+ K + K K + +K+KK +K
Sbjct: 85 ERFKERGTGKGRPVPKPKFEFKKEKKVIEK 114
Score = 28.4 bits (64), Expect = 6.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK 34
E E+ KE+ K + K + + K++KK EK
Sbjct: 81 EYIMERFKERGTGKGRPVPKPKFEFKKEKKVIEK 114
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 29.7 bits (67), Expect = 2.6
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 22/67 (32%)
Query: 124 KICDFGLARVEEPD-----------PNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSV 172
KI D L+R P P K M A E L+ + YS+A DVWS
Sbjct: 157 KITDNALSRDLFPMDYHCLGDNENRPVKWM----------ALESLVN-KEYSSASDVWSF 205
Query: 173 GCIFAEL 179
G + EL
Sbjct: 206 GVLLWEL 212
>gnl|CDD|151885 pfam11446, DUF2897, Protein of unknown function (DUF2897). This
is a bacterial family of uncharacterized proteins.
Length = 55
Score = 26.8 bits (60), Expect = 2.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
K K K + ++KKKK K+ E+ K
Sbjct: 24 KYSAKMKFPQFDKQKKKKAKRNAEQDAKNSA 54
Score = 26.5 bits (59), Expect = 4.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 20 KKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K K K + K+KKKK ++ E+ K +
Sbjct: 24 KYSAKMKFPQFDKQKKKKAKRNAEQDAKNSAD 55
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 29.8 bits (67), Expect = 2.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+ + K++E K K EK +++ E K K+ E ++ KK+KE+E+ E
Sbjct: 408 KNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEF 463
Score = 29.0 bits (65), Expect = 4.3
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
K E K+E+ K K +K +E + K +K + +E KK++E+E E E E
Sbjct: 408 KNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVE 465
Score = 29.0 bits (65), Expect = 4.5
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
E K++ KE+ ++K++EK++ + K + K + K + + +EEEG
Sbjct: 366 EGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEG 417
>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 3. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. MAP4K3 is required in the
activation of S6 kinase by amino acids and for the
phosphorylation of the mTOR-regulated inhibitor of
eukaryotic initiation factor 4E. mTOR regulates ribosome
biogenesis and protein translation, and is frequently
deregulated in cancer.
Length = 267
Score = 29.6 bits (66), Expect = 2.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 364 FKSLKYLHSARILHRDIKPGNLLVNSNCILK 394
+ L YLHS +HRDIK N+L+ N +K
Sbjct: 116 LQGLYYLHSKGKMHRDIKGANILLTDNGHVK 146
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 29.2 bits (66), Expect = 2.7
Identities = 15/46 (32%), Positives = 32/46 (69%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
E +++ E++ E+ +E+K++E+ K ++ + KKKE +KK+K+K
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 29.4 bits (66), Expect = 2.7
Identities = 12/64 (18%), Positives = 32/64 (50%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++ ++++K+KE +++ ++ E K K + +K+++++K E +E E
Sbjct: 105 LEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKERLVAE 164
Query: 62 GRRR 65
R
Sbjct: 165 AREH 168
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 29.7 bits (66), Expect = 2.7
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 29 KKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
KK KK K+ E + EEEE EEEEE E
Sbjct: 120 KKAGNAGKKATKEDESDEDEEEEEEEEEEEAE 151
Score = 28.9 bits (64), Expect = 5.1
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
KK KK K+ E + E++++EEEE E E E E+G
Sbjct: 120 KKAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQG 158
>gnl|CDD|236427 PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.
Length = 501
Score = 29.8 bits (68), Expect = 2.7
Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 3/15 (20%)
Query: 97 RPDSTIDG---YQAR 108
RPDS IDG Y+AR
Sbjct: 260 RPDSIIDGISVYKAR 274
>gnl|CDD|153288 cd07604, BAR_ASAPs, The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP
with SH3 domain, ANK repeat and PH domain containing
proteins. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. This subfamily is
composed of ASAPs (ArfGAP with SH3 domain, ANK repeat
and PH domain containing proteins), which are Arf GTPase
activating proteins (GAPs) with similarity to ACAPs
(ArfGAP with Coiled-coil, ANK repeat and PH domain
containing proteins) in that they contain an N-terminal
BAR domain, followed by a Pleckstrin homology (PH)
domain, an Arf GAP domain, and ankyrin (ANK) repeats.
However, ASAPs contain an additional C-terminal SH3
domain. ASAPs function in regulating cell growth,
migration, and invasion. Vertebrates contain at least
three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2
shows GTPase activating protein (GAP) activity towards
Arf1 and Arf5. They do not show GAP activity towards
Arf6, but is able to mediate Arf6 signaling by binding
stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. BAR
domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The BAR domain of ASAP1
mediates membrane bending, is essential for function,
and autoinhibits GAP activity by interacting with the PH
and/or Arf GAP domains.
Length = 215
Score = 29.3 bits (66), Expect = 2.7
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
K K + KK K K + K K EK+KK+ K+ + E G E E E+ RR
Sbjct: 103 KGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERR 159
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 29.9 bits (68), Expect = 2.7
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 5 EKKKE-KKKEKKKEKKKKEKKKKEK-KKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E+ KE KK + K E + + + +K++ EK + E+ E+EEE
Sbjct: 824 ERYKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
Score = 29.5 bits (67), Expect = 3.7
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
+K +K EK K ++K+KE+ + +EG+
Sbjct: 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD 179
Score = 29.1 bits (66), Expect = 5.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 9 EKKKE-KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE-EEGEEEEEGEEE 61
E+ KE KK + K + + + + EK++ +K E E+ EE EEE
Sbjct: 824 ERYKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 29.7 bits (67), Expect = 2.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
K+KKK+KKK K+ + +K +KK+ EEG G E +
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGTNESQS 61
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 28.5 bits (64), Expect = 2.9
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 11 KKEKKKEKKKKEKKKKEKKKK-KEKKKKEEKKK 42
KK+K K +KE K + KK + KEK K KKK
Sbjct: 100 KKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 28.5 bits (64), Expect = 3.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 5 EKKKEKKKEKKKEKKKKEKKK--KEKKKKKEKKK 36
KKK+ ++ +KE K + KK KEK K KKK
Sbjct: 99 IKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|217438 pfam03228, Adeno_VII, Adenoviral core protein VII. The function of
this protein is unknown. It has a conserved amino
terminus of 50 residues followed by a positively charged
tail, suggesting it may interact with nucleic acid. The
major core protein of the adenovirus, protein VII, was
found to be associated with viral DNA throughout
infection. The precursor to protein VII were shown to be
in vivo and in vitro acceptors of ADP-ribose. The
ADP-ribosylated core proteins were assembled into mature
virus particles. ADP-ribosylation of adenovirus core
proteins may have a role in virus decapsidation.
Length = 117
Score = 28.2 bits (63), Expect = 3.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRR 85
RRRRRR RR + R +++S+R
Sbjct: 87 RAYRRRRRRLRRVARRRARRKSTRA 111
Score = 28.2 bits (63), Expect = 3.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRR 85
R RRRRRR + ++R+ R+
Sbjct: 85 GARAYRRRRRRLRRVARRRARRK 107
Score = 28.2 bits (63), Expect = 3.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRK 86
RRRRRR RR ++ +K + R+
Sbjct: 90 RRRRRRLRRVARRRARRKSTRARR 113
Score = 27.9 bits (62), Expect = 3.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 62 GRRRRRRRRRRRKKEREKKRSSRR 85
G R RRRRRR ++ ++ +
Sbjct: 85 GARAYRRRRRRLRRVARRRARRKS 108
Score = 27.1 bits (60), Expect = 8.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKP 87
R RRRRR+ R +R +RRK
Sbjct: 84 AGARAYRRRRRRLRRVARRRARRKS 108
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 29.7 bits (67), Expect = 3.0
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKK-KKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KE+ KE E+ ++K E+ K+ ++ KK K+KE E+ EEEE EEEEE EEE
Sbjct: 360 KERVKEFIPEELRDKIATEEDVKDIEELKKFLKEKEHPVVERWAAEEEEEEEEEEEEEE 418
>gnl|CDD|221643 pfam12572, DUF3752, Protein of unknown function (DUF3752). This
domain family is found in eukaryotes, and is typically
between 140 and 163 amino acids in length.
Length = 148
Score = 28.9 bits (65), Expect = 3.0
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
K ++ KE +K K+ EKK+ K ++ +KK++KKKKEEE +
Sbjct: 57 ASAPAAASAKASKRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKKKKEEENDDPS 111
>gnl|CDD|220332 pfam09661, DUF2398, Protein of unknown function (DUF2398).
Proteins in this entry are encoded within a conserved
gene four-gene neighborhood found sporadically in a
phylogenetically broad range of bacteria including:
Nocardia farcinica, Symbiobacterium thermophilum, and
Streptomyces avermitilis (Actinobacteria), Geobacillus
kaustophilus (Firmicutes), Azoarcus sp. EbN1 and
Ralstonia solanacearum (Betaproteobacteria).
Length = 368
Score = 29.6 bits (67), Expect = 3.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 49 EEEGEEEEEGEEEGRRRRRRRRRRRK 74
E EE+ +EGR R RR R R+
Sbjct: 180 AELVEEDAPDTDEGRGRSRRHRVYRR 205
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tec and
Rlk (also named Txk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. Instead of PH, Rlk
contains an N-terminal cysteine-rich region. In addition
to PH, Tec also contains the Tec homology (TH) domain
with proline-rich and zinc-binding regions. Tec kinases
are expressed mainly by haematopoietic cells. Tec is
more widely-expressed than other Tec subfamily kinases.
It is found in endothelial cells, both B- and T-cells,
and a variety of myeloid cells including mast cells,
erythroid cells, platelets, macrophages and neutrophils.
Rlk is expressed in T-cells and mast cell lines. Tec and
Rlk are both key components of T-cell receptor (TCR)
signaling. They are important in TCR-stimulated
proliferation, IL-2 production and phopholipase C-gamma1
activation.
Length = 256
Score = 29.4 bits (66), Expect = 3.0
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 124 KICDFGLARVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELLGR- 182
K+ DFG+ R D + + + PE+ ++ YS+ DVWS G + E+
Sbjct: 140 KVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSK-YSSKSDVWSFGVLMWEVFTEG 198
Query: 183 RILFQAQSPVQQLGLIT 199
++ F+ +S + + +I+
Sbjct: 199 KMPFEKKSNYEVVEMIS 215
Score = 28.7 bits (64), Expect = 5.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
++YL +HRD+ N LV+S ++K
Sbjct: 113 MEYLERNSFIHRDLAARNCLVSSTGVVK 140
>gnl|CDD|215352 PLN02652, PLN02652, hydrolase; alpha/beta fold family protein.
Length = 395
Score = 29.5 bits (66), Expect = 3.0
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 44 KKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSR 84
+ ++ E G RR RRR K E E R R
Sbjct: 53 RPRRRVSPLSSPEAGAVPAPSRRWRRRMAWKLEEEDTRRRR 93
>gnl|CDD|206687 cd01900, YchF, YchF GTPase. YchF is a member of the Obg family,
which includes four other subfamilies of GTPases: Obg,
DRG, Ygr210, and NOG1. Obg is an essential gene that is
involved in DNA replication in C. crescentus and
Streptomyces griseus and is associated with the
ribosome. Several members of the family, including YchF,
possess the TGS domain related to the RNA-binding
proteins. Experimental data and genomic analysis suggest
that YchF may be part of a nucleoprotein complex and may
function as a GTP-dependent translational factor.
Length = 274
Score = 29.3 bits (67), Expect = 3.0
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 13 EKKKEKKKKEKKKKEKKKKKE----KKKKEEKKKEKKKKEEEEGEEEEE 57
EK+ E+ +K+ K +K+ K+E +K KE ++ K + E +EE +
Sbjct: 137 EKRLERLEKKAKSGDKEAKEELELLEKIKEHLEEGKPARTLELTDEEIK 185
>gnl|CDD|235132 PRK03577, PRK03577, acid shock protein precursor; Provisional.
Length = 102
Score = 28.1 bits (62), Expect = 3.0
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K KK+ KK ++K + KK K KKE+K E+K + KK
Sbjct: 40 AKTTHHHKKQHKKAPEQKAQAAKKHHKNKKEQKAPEQKAQAAKK 83
Score = 26.9 bits (59), Expect = 8.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+K+ +K E+K + KK K K+++K E+K + KK KK
Sbjct: 44 HHHKKQHKKAPEQKAQAAKKHHKNKKEQKAPEQKAQAAKKHAKKHS 89
>gnl|CDD|233309 TIGR01200, GLPGLI, GLPGLI family protein. This protein family was
first noted as a paralogous set in Porphyromonas
gingivalis, but it is more widely distributed among the
Bacteroidetes. The protein family is now renamed GLPGLI
after its best-conserved motif.
Length = 227
Score = 29.3 bits (66), Expect = 3.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKK 36
K E K KK K+ +++ KK KEK
Sbjct: 193 IKIELNPTPIIIIPKPKKGKKISREKFKKIKEKYY 227
Score = 28.9 bits (65), Expect = 3.7
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+ K + K KK KK EK K+ K+K
Sbjct: 191 KAIKIELNPTPIIIIPKPKKGKKISREKFKKIKEK 225
Score = 28.1 bits (63), Expect = 6.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKK 32
E K KK +K +EK KK K+K
Sbjct: 196 ELNPTPIIIIPKPKKGKKISREKFKKIKEKYY 227
Score = 28.1 bits (63), Expect = 8.0
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 15 KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
+ K KK KK ++K +K KEK
Sbjct: 196 ELNPTPIIIIPKPKKGKKISREKFKKIKEKYY 227
Score = 27.7 bits (62), Expect = 9.5
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE 38
K E K +K KK ++K +K K++
Sbjct: 193 IKIELNPTPIIIIPKPKKGKKISREKFKKIKEK 225
>gnl|CDD|147641 pfam05582, Peptidase_U57, YabG peptidase U57. YabG is a protease
involved in the proteolysis and maturation of SpoIVA and
YrbA proteins, conserved with the cortex and/or coat
assembly by Bacillus subtilis.
Length = 287
Score = 29.5 bits (67), Expect = 3.0
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKK--EEKKKEKKKKEEEEGEEEEEGEE 60
EK + KK+ ++K E K +++K ++K+E E E
Sbjct: 51 EKVDASEVTRYKKRFEEKINESLKLIRQDRKLMREKQEYRATRGYNENEL 100
Score = 29.1 bits (66), Expect = 4.0
Identities = 7/47 (14%), Positives = 23/47 (48%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
E + KK+ ++K + + ++++K +EK++ + + +
Sbjct: 54 DASEVTRYKKRFEEKINESLKLIRQDRKLMREKQEYRATRGYNENEL 100
>gnl|CDD|216295 pfam01093, Clusterin, Clusterin.
Length = 434
Score = 29.7 bits (67), Expect = 3.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
E+ ++E K +K KK+KEE K + EE+ EEEE
Sbjct: 33 ERTEEEHKNLMSTLEKTKKEKEEALKLANEVEEKLEEEEE 72
>gnl|CDD|218754 pfam05795, Plasmodium_Vir, Plasmodium vivax Vir protein. This
family consists of several Vir proteins specific to
Plasmodium vivax. The vir genes are present at about
600-1,000 copies per haploid genome and encode proteins
that are immunovariant in natural infections, indicating
that they may have a functional role in establishing
chronic infection through antigenic variation.
Length = 348
Score = 29.5 bits (66), Expect = 3.1
Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 1/103 (0%)
Query: 1 EKKKEK-KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+K KEK E K +KK K + K E KKEK K+ +E+
Sbjct: 167 KKYKEKCCSSNDNNYCPEYFKCDKKYNPKNLLSKLSCKNESKKEKSKEGGAAEGDEKLEL 226
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTI 102
E + + S P + T + I
Sbjct: 227 LEEESSELETSSSAEGGPSSEPSLPGSPSSGASSLNTLTTTPI 269
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family
consists of several ATP synthase E chain sequences
which are components of the CF(0) subunit.
Length = 83
Score = 27.4 bits (61), Expect = 3.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE 38
+KK+EK +E + ++K EK K KKK+ K++
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.1 bits (60), Expect = 5.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
KKKE+K + + ++K EK K KKK+ K++ K
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 29.8 bits (67), Expect = 3.1
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
++KE K + +EKK E + E + +E K +++K++ +E+ E++E +E
Sbjct: 355 EEKEILKSLFPQNPEEKKDLEDTEIEVVTAQNVDPEEVKDRDQKQQYQED--EDDEHHQE 412
Query: 62 GRR 64
G R
Sbjct: 413 GER 415
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 28.2 bits (63), Expect = 3.1
Identities = 18/75 (24%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 1 EKKKEKKK--EKKKEKKKEKKKKEKKKKEKKK---KKEKKKKEEKKKEKKKKEEEEGEEE 55
+K E ++ EK+K + K++KE+++ ++ + ++E K+ +K ++ + ++ +E EE+
Sbjct: 48 NQKPELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQ 107
Query: 56 EEGEEEGRRRRRRRR 70
E+ E + + RR
Sbjct: 108 EQIPEFLKVKANLRR 122
>gnl|CDD|218845 pfam05991, NYN_YacP, YacP-like NYN domain. This family consists of
bacterial proteins related to YacP. This family is
uncharacterized functionally, but it has been suggested
that these proteins are nucleases due to them containing
a NYN domain. NYN (for N4BP1, YacP-like Nuclease)
domains were discovered by Anantharaman and Aravind.
Based on gene neighborhoods it was suggested that the
bacterial YacP proteins interact with the Ribonuclease
III and TrmH methylase in a processome complex that
catalyzes the maturation of rRNA and tRNA.
Length = 165
Score = 28.7 bits (65), Expect = 3.2
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
+E +E K+ +KK +KK EK++K +KK ++ E +K +K
Sbjct: 121 RELAEEVKRAEKKIRKKAEKRRKSRKKYLDRLSDEVLEKLEK 162
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 29.2 bits (65), Expect = 3.2
Identities = 14/68 (20%), Positives = 40/68 (58%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGR 63
K K K +K+E +++++K E+ + + +K+++ ++ + + + +++ ++ + + EEG
Sbjct: 147 KTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEEGL 206
Query: 64 RRRRRRRR 71
R R R
Sbjct: 207 SPDRTRPR 214
>gnl|CDD|234547 TIGR04330, cas_Cpf1, CRISPR-associated protein Cpf1, subtype
PREFRAN. This family is the long protein of a novel
CRISPR subtype, PREFRAN, which is most common in
Prevotella and Francisella, although widely distributed.
The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the
helicase Cas3 and endonuclease Cas3-HD.
Length = 1287
Score = 29.8 bits (67), Expect = 3.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
K K+ KK+KK K+++ +K+ K + EE K K+
Sbjct: 82 KLKKFKKDKKDLAKEQDTLRKQIVKSLQDNLPEEIFKNIFSKK 124
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or
more acidic residues. The function of members of this
family is unknown.
Length = 104
Score = 28.0 bits (63), Expect = 3.3
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 29 KKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K + E+ K+ + +E+E+ ++ +++
Sbjct: 42 KSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDD 74
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 1.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice
reveal that Ror1 is important in the regulation of
neurite growth in central neurons, as well as in
respiratory development. Loss of Ror1 also enhances the
heart and skeletal abnormalities found in Ror2-deficient
mice.
Length = 283
Score = 29.2 bits (65), Expect = 3.4
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 124 KICDFGLAR-VEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVGCIFAELL 180
KI D GL+R + D + + ++ + PE +M + +S+ D+WS G + E+
Sbjct: 164 KISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGK-FSSDSDIWSFGVVLWEIF 220
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal
region/beta chain. The methionyl-tRNA synthetase
(metG) is a class I amino acyl-tRNA ligase. This model
describes a region of the methionyl-tRNA synthetase
that is present at the C-terminus of MetG in some
species (E. coli, B. subtilis, Thermotoga maritima,
Methanobacterium thermoautotrophicum), and as a
separate beta chain in Aquifex aeolicus. It is absent
in a number of other species (e.g. Mycoplasma
genitalium, Mycobacterium tuberculosis), while
Pyrococcus horikoshii has both a full length MetG and a
second protein homologous to the beta chain only.
Proteins hit by This model should called methionyl-tRNA
synthetase beta chain if and only if the model metG
hits a separate protein not also hit by This model
[Protein synthesis, tRNA aminoacylation].
Length = 137
Score = 28.5 bits (64), Expect = 3.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
KK E+ K + KKKEKK + EK E +K+
Sbjct: 2 KKIEELKLKGAKKKEKKDEGEKALEPQKET 31
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 29.5 bits (66), Expect = 3.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K E K ++ + ++E + E+ +E + E + E E E + E EE
Sbjct: 633 KADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEE 684
Score = 28.7 bits (64), Expect = 7.7
Identities = 12/56 (21%), Positives = 31/56 (55%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K E K ++ + +E+ + + ++ + + + E ++ + + E +GE+ EE E+E
Sbjct: 633 KADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQE 688
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 29.4 bits (67), Expect = 3.6
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
E++++ E+ E ++E++KKEE++G E+G+ R
Sbjct: 65 EQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGKVVMR 105
>gnl|CDD|226096 COG3566, COG3566, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 379
Score = 29.5 bits (66), Expect = 3.6
Identities = 12/81 (14%), Positives = 24/81 (29%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K +K EK + K + K++ + KK + K E +E
Sbjct: 209 HLSASLKTATEKVDALEKDLHAAQAKLDSGQALTKEELDAKKAELSKALAALEAANAADE 268
Query: 61 EGRRRRRRRRRRRKKEREKKR 81
+ + R + +
Sbjct: 269 DPQDRDAAVEAAARLMGAARA 289
Score = 28.4 bits (63), Expect = 7.8
Identities = 14/95 (14%), Positives = 26/95 (27%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
+ EK +K + K + K+E K+ E + E
Sbjct: 210 LSASLKTATEKVDALEKDLHAAQAKLDSGQALTKEELDAKKAELSKALAALEAANAADED 269
Query: 68 RRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTI 102
+ R E + + I+ + S I
Sbjct: 270 PQDRDAAVEAAARLMGAARALVPGLITDGKTCSAI 304
>gnl|CDD|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated
2). NSA2 appears to be a protein required for the
maturation of 27S pre-rRNA in yeast; it has been
characterized in mammalian cells as a nucleolar protein
that might play a role in the regulation of the cell
cycle and in cell proliferation.
Length = 257
Score = 29.1 bits (66), Expect = 3.6
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 1 EKKKEKK--KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEG 58
E++K KK +E K KK +K + K K KK+ K+K + KK K +E ++ ++
Sbjct: 18 EERKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEERNVKQKVDDK 77
Query: 59 EEEG 62
EG
Sbjct: 78 VPEG 81
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 28.7 bits (65), Expect = 3.7
Identities = 14/61 (22%), Positives = 36/61 (59%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK++E++ E ++E +E+ ++ +++ E+ K + + E + +K+ E E E ++ E
Sbjct: 2 EKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAIE 61
Query: 61 E 61
+
Sbjct: 62 K 62
Score = 27.6 bits (62), Expect = 7.8
Identities = 13/61 (21%), Positives = 37/61 (60%), Gaps = 11/61 (18%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEK-----------KKKEEKKKEKKKKEEE 50
++KE+++E + E++ +++ E+ ++E ++ K++ +K+ E+++E+ KK
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAI 60
Query: 51 E 51
E
Sbjct: 61 E 61
>gnl|CDD|224273 COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family)
[Replication, recombination, and repair].
Length = 248
Score = 29.2 bits (66), Expect = 3.8
Identities = 16/109 (14%), Positives = 38/109 (34%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRR 72
E+ KE + + +E+++ K K E K +K+++ EE + + RR ++
Sbjct: 102 ERYKEAAELLAELEEERRDVFSKIKPEIKIKKERRPVEEISLIDLFRAYQKILRRVKQEE 161
Query: 73 RKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQPTRQLVMYQATY 121
+ +L E+ A + + + +
Sbjct: 162 LVEIERIVLEELSVEEQLEELLARLEARGVLRFSDLFSPEERKDEVVST 210
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 29.6 bits (67), Expect = 3.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE 38
+ KEKK+ + E K E + KK ++ +KEK+K E
Sbjct: 824 QLDKEKKEVIRIEGKLENEGFVKKAPKEVIEKEKEKLE 861
Score = 28.9 bits (65), Expect = 6.7
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKE----KKKKEEKKKEKKKKE 48
+ +K+ +K+KKE + E K + E K KE +KEK+K E
Sbjct: 819 ARLQKQLDKEKKEVIRIEGKLENEGFVKKAPKEVIEKEKEKLE 861
>gnl|CDD|219406 pfam07420, DUF1509, Protein of unknown function (DUF1509). This
family consists of several uncharacterized viral
proteins from the Marek's disease-like viruses. Members
of this family are typically around 400 residues in
length. The function of this family is unknown.
Length = 377
Score = 29.2 bits (65), Expect = 3.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 56 EEGEEEGRRRRRRRRRRRKKEREKKRSSRRK 86
GE GRRR R R R + R R RR+
Sbjct: 321 TSGERRGRRRNRSESRSRSRSRSGSRRYRRR 351
Score = 28.1 bits (62), Expect = 8.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 61 EGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTID 103
E R RRR R R + R + S R + + + R +S D
Sbjct: 324 ERRGRRRNRSESRSRSRSRSGSRRYRRRRGRGVPGRRSESRQD 366
>gnl|CDD|187774 cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) and associated Cas proteins comprise a system
for heritable host defense by prokaryotic cells against
phage and other foreign DNA; Very large protein
containing McrA/HNH-nuclease related domain and a
RuvC-like nuclease domain; signature gene for type II.
Length = 799
Score = 29.3 bits (66), Expect = 3.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K K KK++KK E KE ++K KE + K K
Sbjct: 525 GTNKGTKNRKKRQKKNEDNIKEAASALEQKLKELPLDIKSKNILKL 570
Score = 28.9 bits (65), Expect = 5.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
+ K +KK +KK E KE E+K KE K K
Sbjct: 527 NKGTKNRKKRQKKNEDNIKEAASALEQKLKELPLDIKSKN 566
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 28.4 bits (64), Expect = 3.8
Identities = 9/40 (22%), Positives = 27/40 (67%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
E +++ +KE KKE++ +++ ++ + + E + + E++K +
Sbjct: 95 EYQRQSRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 28.5 bits (64), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K KK K+K KK K K+ K +K+K
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKV 29
Score = 27.4 bits (61), Expect = 8.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKK 32
K KK KKK KK K K+ K +K+K +
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVR 30
Score = 27.4 bits (61), Expect = 9.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK 37
K KK KKK KK + KK K KK K +
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRT 31
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for
centrosome separation and maintenance of spindle
bi-polarity. TPX2 is a microtubule-associated protein
that mediates the binding of the C-terminal domain of
Xklp2 to microtubules. It is phosphorylated during
mitosis in a microtubule-dependent way.
Length = 57
Score = 26.6 bits (59), Expect = 3.9
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
++ EK+ + +KK +E++K + +KEE E ++EE EE ++ R+
Sbjct: 5 ERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKE 49
Score = 25.4 bits (56), Expect = 9.3
Identities = 13/42 (30%), Positives = 30/42 (71%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
+++ EK+ E K+ ++KEK + +K++ E ++KEE+++ K+
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQ 45
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 28.9 bits (65), Expect = 4.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 3 KKEKKKEKKKEKKKEKKKK---EKKKKEKKKKKEKKKKEEKKKEKKKK 47
++ K+EK + KE++ ++ K K KKE+KK+ K+KK
Sbjct: 164 QRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKK 211
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 28.6 bits (64), Expect = 4.0
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 24 KKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE-GRRRRRRRRRRRKKEREKKRS 82
K + KK +E+K E++ EK+ +E E E E + +R+ + KKE E K
Sbjct: 102 KDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEAEDKEI 161
Query: 83 SRRK 86
+R K
Sbjct: 162 ARLK 165
>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2
domain [General function prediction only].
Length = 1227
Score = 29.3 bits (66), Expect = 4.0
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEK-KKKEEKKKEKKKKEEEEGEEEE 56
E+ + K +K++ +K+K +K +K+ EE E EE
Sbjct: 849 EEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEE 893
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyk2 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase catalytic domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Tyk2 is widely expressed in many tissues. It is involved
in signaling via the cytokine receptors IFN-alphabeta,
IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell
surface urokinase receptor (uPAR) signaling and plays a
role in modulating vascular smooth muscle cell (VSMC)
functional behavior in response to injury. Tyk2 is also
important in dendritic cell function and T helper (Th)1
cell differentiation. A homozygous mutation of Tyk2 was
found in a patient with hyper-IgE syndrome (HIES), a
primary immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 29.1 bits (65), Expect = 4.2
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 19/69 (27%)
Query: 124 KICDFGLA----------RVEEPDPNKAMTQEVVTQYYRAPEILMGARHYSAAVDVWSVG 173
KI DFGLA RV E + ++ A E L + A+ DVWS G
Sbjct: 147 KIGDFGLAKAVPEGHEYYRVREDGDSPV--------FWYAVECLKENKFSYAS-DVWSFG 197
Query: 174 CIFAELLGR 182
ELL
Sbjct: 198 VTLYELLTH 206
Score = 28.7 bits (64), Expect = 5.6
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 367 LKYLHSARILHRDIKPGNLLVNSNCILK 394
+ YLHS +HRD+ N+L++++ ++K
Sbjct: 120 MAYLHSQHYIHRDLAARNVLLDNDRLVK 147
>gnl|CDD|240071 cd04720, BAH_Orc1p_Yeast, BAH, or Bromo Adjacent Homology domain,
as present in Orc1p, which again is part of the
Saccharomyces cerevisiae Sir1-origin recognition
complex, and as present in Sir3p. The Orc1p BAH doman
functions in epigenetic silencing. BAH domains are
found in a variety of proteins playing roles in
transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 179
Score = 28.5 bits (64), Expect = 4.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 47 KEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
+E+G +E G RR RRR R+ K
Sbjct: 11 ITDEKGNGIDERNRRGETRRSRRRPRQAKR 40
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 29.3 bits (65), Expect = 4.2
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 8 KEKKKEKKKEKKKKEKKKK-------------EKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
KE + E + ++ KE KK EK +KE ++E+ KK E+ E +
Sbjct: 176 KEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEED-TKKADEDGEEPK 234
Query: 55 EEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPF 88
EE +E ++++ ++ ++ +E + ++ KP
Sbjct: 235 VEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPL 268
Score = 29.3 bits (65), Expect = 4.4
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
+K +KE E +++ KK ++ +E K ++ K+ E KKK+ KK +E E E
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYE 260
Score = 28.9 bits (64), Expect = 5.3
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E+ +K E +E K E+ K+ + K+KK KK K+ +E + + K K
Sbjct: 220 EEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHK 266
>gnl|CDD|146077 pfam03263, Cucumo_2B, Cucumovirus protein 2B. This protein may
be a viral movement protein.
Length = 103
Score = 27.6 bits (61), Expect = 4.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 60 EEGRRRRRRRRRRRKKEREKKRSSRR 85
E +R+RRR R+ ++ER K S R
Sbjct: 15 VEKKRQRRRSHRKNRRERGHKSPSER 40
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 29.1 bits (66), Expect = 4.3
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 30 KKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFK 89
+ EE E K E+ + R ++ R+ R+KK SS P K
Sbjct: 319 SECLLSFLEENPVEASKIVEKVLLAAKA--------RAAAKKARELTRKKKLSSISLPGK 370
Query: 90 LSEISATRPD 99
L++ S+ P
Sbjct: 371 LADASSAGPK 380
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 29.1 bits (66), Expect = 4.3
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 21/69 (30%)
Query: 57 EGEEEGRRRRRRRRRRRK-------------KEREKKRSSRRKP---FKLS--EISAT-- 96
E EE +R+ + R +E+ + RKP FKL IS
Sbjct: 99 ETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDL 158
Query: 97 -RPDSTIDG 104
R + +ID
Sbjct: 159 IRGEQSIDA 167
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 27.4 bits (61), Expect = 4.3
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKK 30
+E KK+KKK K + KK EK+ K+ KK
Sbjct: 26 EELKKQKKKNKLRFLKKLEKRPKDVKK 52
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 29.4 bits (67), Expect = 4.4
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+E+ K +KE + + K E ++ +EK +K + KE K+K E+E
Sbjct: 232 REQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKE 275
Score = 28.7 bits (65), Expect = 6.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 1 EKKKEKKKE--KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
E+ K +KE + + K E ++ +K ++ K KE K+K EK+ +K +
Sbjct: 233 EQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLET 281
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 28.1 bits (63), Expect = 4.4
Identities = 18/53 (33%), Positives = 37/53 (69%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
K +KKE K+E +K + +E++KK K +KE+++++ +K+E++ ++E EE
Sbjct: 73 KIEKKELKQEVEKLPRFQEQEKKRMKAEKEEQEQKHQKQEREFLAKQEENLEE 125
Score = 27.7 bits (62), Expect = 7.3
Identities = 20/85 (23%), Positives = 51/85 (60%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E+++++ EK ++++ +E ++ K+ + E+K + + KE K E++E ++E E +
Sbjct: 32 ERQQKRTIEKLEQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQE 91
Query: 65 RRRRRRRRRKKEREKKRSSRRKPFK 89
+ ++R + K+E+E+K + + F
Sbjct: 92 QEKKRMKAEKEEQEQKHQKQEREFL 116
>gnl|CDD|115185 pfam06513, DUF1103, Repeat of unknown function (DUF1103). This
family consists of several repeats of around 30
residues in length which are found specifically in
mature-parasite-infected erythrocyte surface antigen
proteins from Plasmodium falciparum. This family often
found in conjunction with pfam00226.
Length = 215
Score = 28.7 bits (63), Expect = 4.5
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
E KE KEK KK + EK +KE K+K EK+ KE+ KK+ KK +E E
Sbjct: 5 EGDKEDVKEKNDGKKDKVIGSEKTQKEIKEKVEKRVKEKCKKKVKKGIKENDTE 58
>gnl|CDD|217838 pfam04004, Leo1, Leo1-like protein. Members of this family are
part of the Paf1/RNA polymerase II complex. The Paf1
complex probably functions during the elongation phase
of transcription. The Leo1 subunit of the yeast
Paf1-complex binds RNA and contributes to complex
recruitment. The subunit acts by co-ordinating
co-transcriptional chromain modifications and helping
recruitment of mRNA 3prime-end processing factors.
Length = 312
Score = 29.1 bits (65), Expect = 4.6
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK----EEEEGE--- 53
++K K K E +K+E++KKE++K + +++++ ++K K K G
Sbjct: 220 QRKSGGVKITIVGKDPEHEKREREKKEEQKLRARRRRQNREKMKNKPPNRPGHGSGSDSN 279
Query: 54 ------EEEEGEEEGRRRRRRRRRRRKKE 76
E E+EG R+ + KKE
Sbjct: 280 VAKAATTYSEDEDEGSDCETRKAKEVKKE 308
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 28.8 bits (64), Expect = 4.6
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNKAMTQEVVTQY------YRAPEILMGARHYSAAVD 168
VM + KI DFG+ + + M V T+ Y APEI+ + Y +VD
Sbjct: 132 VMLDSEGHIKIADFGMCK-------EHMVDGVTTRTFCGTPDYIAPEII-AYQPYGKSVD 183
Query: 169 VWSVGCIFAELLGRRILFQAQ 189
W+ G + E+L + F +
Sbjct: 184 WWAYGVLLYEMLAGQPPFDGE 204
>gnl|CDD|223436 COG0359, RplI, Ribosomal protein L9 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 28.3 bits (64), Expect = 4.6
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K K K E ++ K +KK E+ E +
Sbjct: 32 PKGLAVPATKGNLKLLEARRAKLEKKAAEELAEAEA 67
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This
family represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 27.5 bits (62), Expect = 4.6
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
EK+ + + +K + K+ K+ K+E +K+ E+ + +++ E +E E E G
Sbjct: 13 EKEAAEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGE 66
Score = 26.8 bits (60), Expect = 7.4
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 4 KEKKKEKKKEK-KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
E E +K + K+ K+ KE+ +KE ++ + +++ E K+ E + E++
Sbjct: 17 AEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKK 70
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 29.2 bits (65), Expect = 4.6
Identities = 10/56 (17%), Positives = 26/56 (46%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K + + K+++ + E+ + E + +++++ E++EE EEE
Sbjct: 121 KAEIGDLDMIIIKRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEE 176
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 29.1 bits (65), Expect = 4.7
Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 12/136 (8%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKE-----------KKKKKEKKKKEEKKKEKKKKEEE 50
K+ KK K K+ K + K K + K KK K K K + E
Sbjct: 460 KELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANLQDVGECS 519
Query: 51 EGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTIDGYQARQP 110
+E ++ + + E R+ KL + + T+ A
Sbjct: 520 SPPNNKEKNDKQTSTSSSVLKSDRSSIE-VRNPNANVKKLEDTTYNAKFPTVSKNNAYTL 578
Query: 111 TRQLVMYQATYSSKIC 126
A S+
Sbjct: 579 VDISTSEDAVNSADDT 594
>gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 432
Score = 29.2 bits (65), Expect = 4.8
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK--EEEEGEEEEEG 58
+ +EK + K ++ K+ K+K + E+KK + K ++ E+K+ E E E EE
Sbjct: 60 QASREKIERKLQDLKELLKQKSYTEPERKKTLQTLKPLSERLEEKESAIYEIESFELEEV 119
Query: 59 EEEGRR 64
E R
Sbjct: 120 ITEPER 125
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional.
Length = 292
Score = 28.6 bits (65), Expect = 4.8
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
K E K +E ++++E +++ E+K E+ K EEG+ EE
Sbjct: 35 KPPELKAEEIEERREVREEAEEKYEEAK---EEGDLEE 69
>gnl|CDD|221533 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA
binding. This is the middle region of a family of TATA
element modulatory factor 1 proteins conserved in
eukaryotes that contains at its N-terminal section a
number of leucine zippers that could potentially form
coiled coil structures. The whole proteins bind to the
TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding
of TATA binding protein. TMFs are evolutionarily
conserved golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells.
Length = 74
Score = 26.9 bits (60), Expect = 4.9
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
E+ + +E +K KKE K KK + K KE +K+ + K+K +K E+E E EE
Sbjct: 12 EQIAQLMEEGEKLSKKELKHNNTIKKLRAKNKELEKEIAELKKKLEKLEKELENLEE 68
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 28.9 bits (65), Expect = 4.9
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG--EEEEEGEEEGRRR 65
K K E++ ++K++ KK+ + + +K +K+ + + E +E E G R
Sbjct: 58 KMKAYEQEALEQKQKDKKRTLQDLADSFEKSDKESQDYSSSDSGFDEEPDEPAETAGSLR 117
Query: 66 RRRRRRRRKKEREKKRSS 83
R ++ ++ S
Sbjct: 118 PIRSSAAAYRDINRELGS 135
Score = 28.2 bits (63), Expect = 9.7
Identities = 16/75 (21%), Positives = 33/75 (44%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K K ++E ++K+K+KK+ + + +K +K+ ++ + EE + E G
Sbjct: 58 KMKAYEQEALEQKQKDKKRTLQDLADSFEKSDKESQDYSSSDSGFDEEPDEPAETAGSLR 117
Query: 62 GRRRRRRRRRRRKKE 76
R R +E
Sbjct: 118 PIRSSAAAYRDINRE 132
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 29.2 bits (65), Expect = 4.9
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+K ++ KK + KK+ KK KK KK KK KKK ++ +
Sbjct: 975 RKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAK------ 1028
Query: 62 GRRRRRRRRRRRKKEREKKRSSRRK 86
+ R+ ++ K+ +K + R+
Sbjct: 1029 -KVARKPAAKKAAKKPARKAAGRKA 1052
>gnl|CDD|211578 TIGR00497, hsdM, type I restriction system adenine methylase
(hsdM). Function: methylation of specific adenine
residues; required for both restriction and modification
activities. The ECOR124/3 I enzyme recognizes
5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257:
960-969 (1996)) [DNA metabolism,
Restriction/modification].
Length = 501
Score = 29.2 bits (65), Expect = 4.9
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 4 KEKKKEKKKEKKKEK------KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
+EKK + K EK KKE+ K +++K ++ K E E+EE
Sbjct: 422 REKKNNRLSPKNIEKIVDCFNSKKEEANFAKSVERDKIRESNYDLTVGKYVNSEAEKEE 480
>gnl|CDD|197700 smart00398, HMG, high mobility group.
Length = 70
Score = 26.5 bits (59), Expect = 4.9
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E + + K E E KK ++ + ++EK EEK K+ K++ EEE
Sbjct: 15 ENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEE 65
Score = 26.5 bits (59), Expect = 5.9
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE 55
+E + + K E + KK ++ K ++++ +EK KK++E EEE
Sbjct: 14 QENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEE 65
>gnl|CDD|110514 pfam01517, HDV_ag, Hepatitis delta virus delta antigen. The
hepatitis delta virus (HDV) encodes a single protein,
the hepatitis delta antigen (HDAg). The central region
of this protein has been shown to bind RNA. Several
interactions are also mediated by a coiled-coil region
at the N terminus of the protein.
Length = 194
Score = 28.3 bits (63), Expect = 5.1
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
K+ +E++ ++K E KKK+ K EEE E EE+ R RR
Sbjct: 85 GKRPHAGGFTDQERRDHRRRKALENKKKQLSSGGKHLSREEEEELRRLTEEDEERERR 142
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 27.6 bits (62), Expect = 5.1
Identities = 15/45 (33%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKK-KKEKKKKKEKKKKEEKKKEKK 45
++ EK+ E+ +E+ +E ++ KK +K +++K+K++KEE ++E+K
Sbjct: 69 EQAEKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQK 113
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 27.6 bits (62), Expect = 5.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 37 KEEKKKEKKKKEEEEGEEEEEG 58
KKE+KK+E EE +++ G
Sbjct: 83 AAAAKKEEKKEESEEESDDDMG 104
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization
module that binds membranes and detects membrane
curvature. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions including organelle
biogenesis, membrane trafficking or remodeling, and cell
division and migration. Mutations in BAR containing
proteins have been linked to diseases and their
inactivation in cells leads to altered membrane
dynamics. A BAR domain with an additional N-terminal
amphipathic helix (an N-BAR) can drive membrane
curvature. These N-BAR domains are found in amphiphysins
and endophilins, among others. BAR domains are also
frequently found alongside domains that determine lipid
specificity, such as the Pleckstrin Homology (PH) and
Phox Homology (PX) domains which are present in beta
centaurins (ACAPs and ASAPs) and sorting nexins,
respectively. A FES-CIP4 Homology (FCH) domain together
with a coiled coil region is called the F-BAR domain and
is present in Pombe/Cdc15 homology (PCH) family
proteins, which include Fes/Fes tyrosine kinases, PACSIN
or syndapin, CIP4-like proteins, and srGAPs, among
others. The Inverse (I)-BAR or IRSp53/MIM homology
Domain (IMD) is found in multi-domain proteins, such as
IRSp53 and MIM, that act as scaffolding proteins and
transducers of a variety of signaling pathways that link
membrane dynamics and the underlying actin cytoskeleton.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The I-BAR domain
induces membrane protrusions in the opposite direction
compared to classical BAR and F-BAR domains, which
produce membrane invaginations. BAR domains that also
serve as protein interaction domains include those of
arfaptin and OPHN1-like proteins, among others, which
bind to Rac and Rho GAP domains, respectively.
Length = 194
Score = 28.2 bits (63), Expect = 5.2
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+ KK+ K+ KK+++K K + ++K +K ++KKK + E EEE
Sbjct: 86 KEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEE 136
Score = 28.2 bits (63), Expect = 6.0
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
KK+ KK +K + ++K KK ++KKK K + E++ ++ K++ EE
Sbjct: 97 KKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEE 146
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 28.8 bits (64), Expect = 5.3
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 115 VMYQATYSSKICDFGLARVEEPDPNK--AMTQEVVTQYYRAPEILMGARHYSAAVDVWSV 172
V+ ++ KI DFGLAR+ + D + A +V ++ IL R ++ DVWS
Sbjct: 140 VLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILH--RRFTHQSDVWSY 197
Query: 173 GCIFAELL 180
G EL+
Sbjct: 198 GVTVWELM 205
Score = 27.7 bits (61), Expect = 10.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 365 KSLKYLHSARILHRDIKPGNLLVNS 389
K + YL R++HRD+ N+LV S
Sbjct: 120 KGMSYLEEVRLVHRDLAARNVLVKS 144
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 28.3 bits (63), Expect = 5.4
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEK 44
++KEKKK + KE+KK K++K+K+ + + KE+
Sbjct: 93 REKEKKKSRTKEEKKALKEEKDKEAEPYMWCVWDGVKEQ 131
Score = 28.3 bits (63), Expect = 5.8
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKK 30
++KEKKK + KE+KK K+++ K+ E
Sbjct: 93 REKEKKKSRTKEEKKALKEEKDKEAEPYM 121
Score = 27.9 bits (62), Expect = 8.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKK 26
EKKK + KE+KK K+EK K+ +
Sbjct: 96 EKKKSRTKEEKKALKEEKDKEAEPYM 121
>gnl|CDD|220410 pfam09798, LCD1, DNA damage checkpoint protein. This is a family
of proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 29.0 bits (65), Expect = 5.4
Identities = 11/40 (27%), Positives = 27/40 (67%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
++K++E+ K+K + + KEK +E +K K++ + E +++
Sbjct: 11 QQKQEERNKQKSRVNELKEKHDQELQKLKQELQSLEDERK 50
>gnl|CDD|234537 TIGR04313, aro_clust_Mycop, aromatic cluster surface protein.
Members of this family are absolutely restricted to the
Mollicutes (Mycoplasma and Ureaplasma). All have a
signal peptide, usually of the lipoprotein type,
suggesting surface expression. Most members have
lengths of about 280 residues but some members have a
nearly full-length duplication. The mostly nearly
invariant residue, a Trp,is part of a strongly
conserved 9-residue motif,
[ND]-W-[LY]-[WF]-X-[LF]-X-N-[LI], where X usually is
hydrophobic. Because the hydrophobic six-residue core
of this motif almost always contains three to four
aromatic residues, we name this family aromatic cluster
surface protein. Multiple paralogs may occur in a given
Mycoplasma, usually clustered on the genome.
Length = 297
Score = 28.5 bits (64), Expect = 5.4
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 13/69 (18%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKK-------------EKKKKEEKKKEKKKKE 48
+ + KK K + +K KK+KK K K E +K + K +K
Sbjct: 28 SENDLKKLIKNKFDVKKDKKDKKWKVFLNNKYINNLLNLVFKNDEDEKNKYIKSQKNINS 87
Query: 49 EEEGEEEEE 57
E + +
Sbjct: 88 ELYLKLLKL 96
>gnl|CDD|225437 COG2882, FliJ, Flagellar biosynthesis chaperone [Cell motility and
secretion / Intracellular trafficking and secretion /
Posttranslational modification, protein turnover,
chaperones].
Length = 148
Score = 28.1 bits (63), Expect = 5.4
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKK-KKEKKKKKEKKKKEEKKKEKKKKEE 49
K K+ E+K+E +EK+ + K +K K+++K + EE ++E+K +E
Sbjct: 87 LSKLRKQVEQKREIWQEKQIELKALEKLKERQKTEFLLEENRREQKIMDE 136
>gnl|CDD|227666 COG5374, COG5374, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 28.2 bits (63), Expect = 5.5
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
K + ++ + + +K +E+ K K E +++ +K+ KKK
Sbjct: 149 KARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKK 191
Score = 27.8 bits (62), Expect = 8.1
Identities = 10/56 (17%), Positives = 29/56 (51%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K + + + K + +K + + +K ++E K +K E +++ ++E +++E
Sbjct: 137 KIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKKE 192
>gnl|CDD|221891 pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This
is a leucine-zipper-like or homeodomain-like region of
transposase TnpC of insertion element IS66.
Length = 77
Score = 26.9 bits (60), Expect = 5.5
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRK 74
E E E E RRR RK
Sbjct: 40 AALEAEAEAAAAPEQPAAPPRRRPGRK 66
Score = 26.1 bits (58), Expect = 10.0
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKERE 78
E + E E E + RR+ R+
Sbjct: 36 EADAAALEAEAEAAAAPEQPAAPPRRRPGRK 66
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 28.8 bits (64), Expect = 5.5
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
+K ++ ++K+ +K+ + E+ + E + EE E EEE E E+
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYED 394
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 26.7 bits (59), Expect = 5.5
Identities = 4/32 (12%), Positives = 18/32 (56%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
+ + ++ ++ K+ K ++++ +E++E
Sbjct: 49 EPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 28.3 bits (64), Expect = 5.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKK 46
KKK K K K KK+ +++ + + +E K+K+K K
Sbjct: 2 KKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 27.6 bits (62), Expect = 5.6
Identities = 9/33 (27%), Positives = 25/33 (75%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKE 33
E ++ + +EKK ++++ K++ E+ K+ +++KK+
Sbjct: 94 EAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 27.2 bits (61), Expect = 6.8
Identities = 8/37 (21%), Positives = 27/37 (72%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
+++ E ++ + +++K +E+ K++ ++ KE ++++KK
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|182730 PRK10787, PRK10787, DNA-binding ATP-dependent protease La;
Provisional.
Length = 784
Score = 29.1 bits (65), Expect = 5.6
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 22 EKKKKEK-KKKKEKKKKEEKKKEKKKK-EEEEGEEEEEGEE-EGRRRRRRRRRRRKKERE 78
EK+ + + KK+ EK ++E E+ K ++E GE ++ +E E +R+ + K+ +E
Sbjct: 210 EKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKE 269
Query: 79 KKRSSRRKPFKLSEIS--ATRPDSTID-----GYQARQPTRQ-LVMYQATYSSKICDFGL 130
K + +K +S +S AT ID + AR ++ L Q + +GL
Sbjct: 270 KAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTD--HYGL 327
Query: 131 ARVEE 135
RV++
Sbjct: 328 ERVKD 332
>gnl|CDD|216298 pfam01101, HMG14_17, HMG14 and HMG17.
Length = 93
Score = 27.1 bits (60), Expect = 5.7
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKE--EKKKEKKKKEEEEGEEE 55
KK K+KK K +K K KK+ ++++ KE+ E E K E+ E ++E
Sbjct: 39 KKAAAKKKKPAVKGKKGAKGKKETKQEEAKEENPAENGETKTEEAPASEAAEDKE 93
>gnl|CDD|216159 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family. This
family includes ribosomal proteins from the large
subunit. This family includes L18 from bacteria and L5
from eukaryotes. It has been shown that the amino
terminal 93 amino acids of rat Rpl5 are necessary and
sufficient to bind 5S rRNA in vitro. Suggesting that
the entire family has a function in rRNA binding.
Length = 119
Score = 27.6 bits (62), Expect = 5.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 62 GRRRRRRRRRRRKKEREKKRSSR 84
G+RRRRRR+R R + + K + R
Sbjct: 1 GKRRRRRRKRLRVRRKLKGTAER 23
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 27.8 bits (62), Expect = 5.8
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
K E EKK+ ++ +K K E+ +K+E ++ E+ +E + + EE +E
Sbjct: 78 KTGPIESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 27.0 bits (60), Expect = 8.9
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKE 43
KK +E +K K +E +K+E ++ ++ ++ + + EE +KE
Sbjct: 88 KKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 28.9 bits (65), Expect = 5.9
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK--EKKKKEEEEGEEEEEG 58
++ E+ ++ E ++KKK ++ E + KK + +K E ++E E ++
Sbjct: 836 KELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQFA 895
Query: 59 EEEG 62
EEEG
Sbjct: 896 EEEG 899
Score = 28.5 bits (64), Expect = 7.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE--EEEGEEEEE 57
++K+K E+ E + + KK +K ++ KKE++ K+ EEEG EEE
Sbjct: 851 RQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEEGLNEEE 904
>gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed.
Length = 637
Score = 28.9 bits (65), Expect = 5.9
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 17/58 (29%)
Query: 21 KEKKKKEKKKKKEKKKKEE--KKKEKKKKE---------------EEEGEEEEEGEEE 61
KK K+K EK +EE KK +K +E +E G + E G+EE
Sbjct: 2 YMNIKKLKQKILEKISEEELEKKINEKIEENGGFLGEEAALMMVAQELGIDIEYGQEE 59
>gnl|CDD|204122 pfam09072, TMA7, Translation machinery associated TMA7. TMA7
plays a role in protein translation. Deletions of the
TMA7 gene results in altered protein synthesis rates.
Length = 63
Score = 26.3 bits (58), Expect = 5.9
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK 41
K KK+KK+ +++ K+K+K+E K KE K + K
Sbjct: 12 KAPKKQKKELDEEDLAFKQKQKEEAKALKELAAKAKGK 49
Score = 26.0 bits (57), Expect = 8.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
KKK K KK++K+ E+ K+K+KE+ K ++ K K
Sbjct: 7 KKKPLKAPKKQKKELDEEDLAFKQKQKEEAKALKELAAKAKG 48
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 28.3 bits (63), Expect = 6.0
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 2 KKKEKKKEKKKEKKKEKKKK----------EKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
KK + K+ +K+K K+ E + + +K+ + E K +K +E
Sbjct: 54 KKTKSKRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELT 113
Query: 52 GEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRP 98
EE+E +E R R +R +++ +K + + RP
Sbjct: 114 DEEKEPYYKEANSDRERYQREKEEYNKKLPNKAPIGPFIENEPKIRP 160
>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional.
Length = 472
Score = 28.6 bits (64), Expect = 6.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 56 EEGEEEGRRRRRRRRRRRKKERE 78
E ++ RRR RR R+R RE
Sbjct: 447 ELDDDPAPRRRTRRPRKRAPRRE 469
>gnl|CDD|218534 pfam05278, PEARLI-4, Arabidopsis phospholipase-like protein (PEARLI
4). This family contains several phospholipase-like
proteins from Arabidopsis thaliana which are homologous
to PEARLI 4.
Length = 234
Score = 28.3 bits (63), Expect = 6.0
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE---EEGEEEGRRRRRRRR 70
EK++ E+ KK++ EK++ E +KEK+ KE E EE GE E +R R +R
Sbjct: 159 EKERHERDVLLKKQEMEKQEAELVRKEKEVKEFREKVEEMAGRLGELEMKRLRLEKR 215
>gnl|CDD|152754 pfam12319, TryThrA_C, Tryptophan-Threonine-rich plasmodium antigen
C terminal. This protein is found in eukaryotes.
Proteins in this family are typically between 254 to 536
amino acids in length. This family is the C terminal of
a surface antigen of malarial Plasmodium species. It is
currently being targeted for use as part of a subunit
vaccine against Plasmodium falciparum, the main species
involved in causing human malaria.
Length = 217
Score = 28.4 bits (64), Expect = 6.1
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
K++E + +K EKKK K KKKK K KE +EK+
Sbjct: 125 KREEDEYWEKWEKKKWSKPLNLKKKKNWLKWKERINREKE 164
Score = 28.1 bits (63), Expect = 7.8
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKK------KKKEKK--KKEEKKKEKKKKE 48
EKKK K K+KK K KE+ +EK+ K+KEK + K EK K +
Sbjct: 136 EKKKWSKPLNLKKKKNWLKWKERINREKEEWNNWVKEKEKLYINNKWDKWEKWKND 191
Score = 27.7 bits (62), Expect = 8.9
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 3 KKEK-----KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
K +K + K+E+ + +K EKKK K +KKK K KE+ +E+EE
Sbjct: 112 KNKKILEWLMSDWKREEDEYWEKWEKKKWSKPLNLKKKKNWLKWKERINREKEE 165
>gnl|CDD|234045 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter [Cellular processes,
Sporulation and germination].
Length = 382
Score = 28.5 bits (64), Expect = 6.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
E K++ +K K+E +K K+K EK+ KKE + +K E EG
Sbjct: 317 YEVKEKVEKVTKEEAIEKAKEKAEKELKKELDPNAKIVSDKILSERVEGG 366
Score = 28.1 bits (63), Expect = 7.9
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKK-----------KEKKKKKEKKKKEEKKKEKKKKEEE 50
KK K+ K ++K KK + E K+K EK KEE ++ K+K E+
Sbjct: 282 KKPPKEFAKYDVEEKTKKFGLWRWSLPIEIVKETYYEVKEKVEKVTKEEAIEKAKEKAEK 341
Query: 51 EGEEE 55
E ++E
Sbjct: 342 ELKKE 346
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 28.7 bits (64), Expect = 6.1
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KE+ K+ E ++K E+ K + ++ K++ K+ E + EE EE EE
Sbjct: 357 KERVKDAIPEDLRDKIATEEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEA 414
>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
(Trep_dent_lipo). This entry represents a family of
six predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 394
Score = 28.7 bits (64), Expect = 6.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
KE+++ + K E K + K+ E K E + K E+ + EE++ EE
Sbjct: 23 KEQREMRIKVESSMKIEPKENEFLSKPEYDEHVKTPEQIKELEEKKAYEE 72
>gnl|CDD|227751 COG5464, COG5464, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 28.5 bits (64), Expect = 6.2
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 37 KEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRR 70
EE + + G E+EG++EG
Sbjct: 221 AEEGPQHGEALMTIAGRLEQEGKQEGLEIVPGLL 254
>gnl|CDD|219555 pfam07753, DUF1609, Protein of unknown function (DUF1609). This
region is found in a number of hypothetical proteins
thought to be expressed by the eukaryote
Encephalitozoon cuniculi, an obligate intracellular
microsporidial parasite. It is approximately 200
residues long.
Length = 230
Score = 28.2 bits (63), Expect = 6.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 48 EEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKL 90
EEEE EE E EE R +++ K KK R +K+
Sbjct: 1 EEEESEEAEVPLEEMAVGGARAKKKGGK---KKSKGGRHCYKI 40
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 28.0 bits (63), Expect = 6.4
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 8 KEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRR 67
KEK KE KK + K +KK + K+ E+ KK+ + E+E E E ++ ++ +
Sbjct: 99 KEKLKEINARPIKKVAEAKARKKMRALKRLEKAKKKAEAIAEDEDISEREKAKQIKKLYK 158
Query: 68 RRRRRRKKEREK----KRSSRRKP 87
+ ++++KK ++ K+ ++ K
Sbjct: 159 KAKKKKKKRKKTYVVAKKGNKGKA 182
>gnl|CDD|227780 COG5493, COG5493, Uncharacterized conserved protein containing a
coiled-coil domain [Function unknown].
Length = 231
Score = 28.3 bits (63), Expect = 6.4
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRK 74
+K+ E+++K+ +K E +K+K KE+ + + + EE + +R
Sbjct: 52 RKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQEEEFRATKEDIKRLETI 103
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 28.4 bits (63), Expect = 6.4
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKK 42
+++EK K+ +KEKK EKK KE ++K + + EK+K
Sbjct: 219 QRREKMKDDRKEKKLEKKIKELRRKTRTSNYSRMDVREKEK 259
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 28.8 bits (65), Expect = 6.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEE 54
+E K E E K KKKK + K KK + E KK++ + G+E
Sbjct: 568 EEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKNKVLPEAKKRKLKLGDE 618
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 28.5 bits (63), Expect = 6.5
Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE----EEE 56
K ++K ++E +E++K KKK+ +K +++ +EE + E+
Sbjct: 409 RKNARQRKAGLASPEEEALGEEEQKAPPKKKQLNQKNKQQTGSGTNSDEERDDTSLDEDR 468
Query: 57 EGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKL 90
+ ++G R + +R + SRR+ +
Sbjct: 469 DLADDGGLPRIHKDKRAGASLTQSPLSRRRLKVV 502
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 28.6 bits (64), Expect = 6.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKK 32
E + K K++K KK+++ KE+ K K
Sbjct: 348 EAARVKAKKEKLAKKRKQVSKEEAAAIKAAGK 379
Score = 28.6 bits (64), Expect = 6.9
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
K ++ E + + KK++ KK+++ KEE K
Sbjct: 338 KTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKA 376
Score = 28.2 bits (63), Expect = 7.9
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 12 KEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
K ++ E + + KK+K KK+++ KE+ + G+
Sbjct: 338 KTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGK 379
>gnl|CDD|204032 pfam08703, PLC-beta_C, PLC-beta C terminal. This domain
corresponds to the alpha helical C terminal domain of
phospholipase C beta.
Length = 181
Score = 27.9 bits (62), Expect = 6.6
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 13 EKKKEKKKKEKKKKEKKKKKEKKK----KEEKKKEKKKKEEEEGE 53
+ KK K+ EK+KKE KKK ++K+ +E K KEK +E E+ E
Sbjct: 53 QLKKLKEISEKEKKELKKKLDRKRLERIQEAKTKEKHAQEREKTE 97
Score = 27.9 bits (62), Expect = 7.6
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 4 KEKKKEKKKEKKKEKKKKEKKKKEK---KKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
K+ K+ +KEKK+ KKK ++K+ E+ K KEK +E +K E + +E + + E
Sbjct: 55 KKLKEISEKEKKELKKKLDRKRLERIQEAKTKEKHAQEREKTEINRSHIQEVVQSIKRLE 114
Query: 61 EGRRRRRRR 69
E ++RR+ +
Sbjct: 115 EAQKRRQEK 123
>gnl|CDD|227702 COG5415, COG5415, Predicted integral membrane metal-binding protein
[General function prediction only].
Length = 251
Score = 28.4 bits (63), Expect = 6.7
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKE 76
E + + +K K + +KK EK KE+ ++ EE + + + +KE
Sbjct: 95 EFRNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQKYSEELNAKYQELNNLKTEKE 154
Query: 77 REKKRSSRRKP 87
+ KK S +K
Sbjct: 155 KFKKESHVKKK 165
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 28.6 bits (64), Expect = 6.8
Identities = 9/73 (12%), Positives = 27/73 (36%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K + +E + + +K+ E + +E+ +++ +++ K E +
Sbjct: 315 KALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVE 374
Query: 63 RRRRRRRRRRRKK 75
R R ++
Sbjct: 375 TARETEEAERAEQ 387
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 28.6 bits (64), Expect = 6.9
Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 39 EKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKPFKLSEI--SAT 96
++ KKKK G RRRRR+RRK+ + L I SA
Sbjct: 55 LRRVRKKKKGSRAGRRA-------SSLRRRRRQRRKEPQA-------GTGALGPISQSAI 100
Query: 97 RPDSTIDGYQARQPT 111
P + +
Sbjct: 101 SPQRRSSTGENSAES 115
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 27.9 bits (62), Expect = 6.9
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
KE +EK K + K + +E K E + + K
Sbjct: 138 MDKELLEEKLKGEVIKGEPLEEVIDKLEYPVESPADLLHEIKIHL 182
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 28.2 bits (63), Expect = 7.0
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 24 KKKEKKKKKEKKKKE--EKKKEKKKKEEEEGEEEEEGE-EEGRRRRRRRRRRRKKEREKK 80
+ +EK + EK+ K+ + K + +E+EE E+ E E E +R ++ ++++ K
Sbjct: 65 ETEEKVDQYEKENKDSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAK 124
Query: 81 RSSRRKPFKLSEISATRPDSTIDGYQAR 108
+++ E S + I ++ +
Sbjct: 125 EKDKQEIIDELETSNLPANVIIAQHKKQ 152
>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin
remodeling, contains bromodomain [Chromatin structure
and dynamics / Transcription].
Length = 371
Score = 28.2 bits (63), Expect = 7.0
Identities = 11/50 (22%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKK--EKKKKEEKKKEKKKKEEEEGE 53
E K KK K K E + K K KK+ +
Sbjct: 112 VTPESGLGSLLMAHLKTSVKKRKTPKIEDELLYADNKAIAKFKKQLFLRD 161
>gnl|CDD|234032 TIGR02855, spore_yabG, sporulation peptidase YabG. Members of
this family are the protein YabG, demonstrated for
Bacillus subtilis to be an endopeptidase able to
release N-terminal peptides from a number of
sporulation proteins, including CotT, CotF, and SpoIVA.
It appears to be expressed under control of sigma-K
[Cellular processes, Sporulation and germination].
Length = 283
Score = 28.1 bits (63), Expect = 7.1
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEE 50
E E +++K+K++ KE+ + + + K K+KKE + K +
Sbjct: 50 ELVDESERKKRKKRFKERMETSYRLFRQDYKLMKEKKEYRATGGYKNNQL 99
>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region. This
family contains sequences that are similar to the
N-terminal region of Red protein. This and related
proteins contain a RED repeat which consists of a
number of RE and RD sequence elements. The region in
question has several conserved NLS sequences and a
putative trimeric coiled-coil region, suggesting that
these proteins are expressed in the nucleus. The
function of Red protein is unknown, but efficient
sequestration to nuclear bodies suggests that its
expression may be tightly regulated of that the protein
self-aggregates extremely efficiently.
Length = 238
Score = 28.3 bits (63), Expect = 7.1
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 10 KKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
KKK+K +K+E+ +++ K + + E++K K +
Sbjct: 1 KKKKKYAYLRKQEENAEKEINPKYRDRARERRKGINKDYDPS 42
>gnl|CDD|215824 pfam00260, Protamine_P1, Protamine P1.
Length = 51
Score = 25.6 bits (56), Expect = 7.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 63 RRRRRRRRRRRKKEREKKRSSRR 85
RRRRR RRRRR+ R ++R
Sbjct: 17 RRRRRCRRRRRRCCRRRRRRVGC 39
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 28.5 bits (63), Expect = 7.2
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 366 SLKYLHSARILHRDIKPGNLLVNSN 390
+++Y+H +++HRDIK N+ +N +
Sbjct: 279 AVEYIHDKKLIHRDIKLENIFLNCD 303
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 28.1 bits (63), Expect = 7.2
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKK------------KEKKKKE 48
E K+ ++ ++ + + +E+ K+E KK ++ +K +E+ ++
Sbjct: 56 EAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERL 115
Query: 49 EEEGEEE--EEGEEEGR 63
EE + E EEG E+GR
Sbjct: 116 IEEAKAEGYEEGYEKGR 132
>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional.
Length = 198
Score = 27.8 bits (62), Expect = 7.3
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKR 81
++ +E ++K E E+ +KE E+ +EE E + R+ + + E EK+R
Sbjct: 8 IQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQR 62
>gnl|CDD|115071 pfam06390, NESP55, Neuroendocrine-specific golgi protein P55
(NESP55). This family consists of several mammalian
neuroendocrine-specific golgi protein P55 (NESP55)
sequences. NESP55 is a novel member of the chromogranin
family and is a soluble, acidic, heat-stable secretory
protein that is expressed exclusively in endocrine and
nervous tissues, although less widely than
chromogranins.
Length = 261
Score = 28.3 bits (62), Expect = 7.3
Identities = 13/69 (18%), Positives = 35/69 (50%)
Query: 19 KKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKERE 78
++ +E + +E ++ E +K ++ EE EEE+E E++ R + ++ R+++
Sbjct: 187 RRAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPARRRDPS 246
Query: 79 KKRSSRRKP 87
+ ++
Sbjct: 247 PESPPKKGA 255
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 28.5 bits (63), Expect = 7.4
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 28 KKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSRRKP 87
+++++E + E K+E + +E EE+E ++E R + E ++ K
Sbjct: 295 EQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKR 354
Query: 88 FKLSEISATRP 98
++ AT P
Sbjct: 355 RQMES--ATNP 363
>gnl|CDD|227468 COG5139, COG5139, Uncharacterized conserved protein [Function
unknown].
Length = 397
Score = 28.5 bits (63), Expect = 7.4
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 21 KEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG-EEEEEGEEEGRRRRRRRRRRRKKEREK 79
K+ + E ++ + + K + +K EE +E E R+R+ +
Sbjct: 36 KQNQSMEPQETSKGTSNDTKDPDNGEKNEEAAIDENSNVEAAERKRKHISTDFSDMSLLR 95
Query: 80 KR 81
KR
Sbjct: 96 KR 97
>gnl|CDD|224693 COG1779, COG1779, C4-type Zn-finger protein [General function
prediction only].
Length = 201
Score = 28.1 bits (63), Expect = 7.4
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKK--------------KEKKKKKEKKKKEEKKKEKKK 46
E + KKK ++ K+ ++ + K+K +K EK KEE +K K
Sbjct: 130 EDDESKKKAEELLKRIDEAIEGKRKFTLIIEDPLGNSAIISEKAPDEKLSKEEAEKLKTG 189
Query: 47 KEEEEGEEEEE 57
+G+ + +
Sbjct: 190 MNVIDGDGDMK 200
>gnl|CDD|128345 smart00030, CLb, CLUSTERIN Beta chain.
Length = 206
Score = 27.9 bits (62), Expect = 7.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 17 EKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEE 56
EK KE+K ++ KKKKEE K+ ++ EE+ E +
Sbjct: 39 EKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQG 78
>gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110). This
is a family that is found predominantly at the
C-terminus of Kelch-containing proteins. However, the
exact function of this region is not known.
Length = 99
Score = 26.9 bits (60), Expect = 7.4
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 11 KKEKKKEKKKKEKKKK--EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRR 68
+ + E KE KK + +++ + +EE + + ++EE+ G EE + +
Sbjct: 35 ESLRDAELSGKELKKDAFDLAEERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGG 94
Query: 69 RRRRR 73
RRR
Sbjct: 95 EGRRR 99
Score = 26.9 bits (60), Expect = 7.7
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 32 KEKKKK-----EEKKKEKKK--KEEEEGEEEEEGEEEGRRRRRRRRRRRKKER 77
KE KK EE+ E ++ + E+ EEE+ G EE + + + R
Sbjct: 45 KELKKDAFDLAEERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGR 97
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 28.4 bits (62), Expect = 7.5
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
K EKKKE++ ++ K+ + ++ K +K++ +K EK +E+ ++E+
Sbjct: 146 KNEKKKERQLAEQLAAKRLKDEQHRHKARKQELRKREKDRERARRED 192
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 28.5 bits (63), Expect = 7.5
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K K+ KK K+ K+ E+ +E+ K K + +++ + EG E +
Sbjct: 216 KPTKEPVKKHSDVKDPKEDEELDEEEHDSAMDKVKLDLFADEEDEPNAEGVGEASDKNLS 275
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFKLS-EISAT-RPDSTI 102
+++ + E +K K +K + E+SA RP +++
Sbjct: 276 SFEKQQIEMDEQIEELEKELVAPKEWKYAGEVSAKKRPKNSL 317
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 28.4 bits (63), Expect = 7.6
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
EK +E K +K K +K + K K + ++K +E K E+ E E EE
Sbjct: 285 EKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEE 344
Query: 61 EGRRRRRRRRRRRKKEREKKRS 82
E + + K+ R++ S
Sbjct: 345 EIKALQSNIDELHKQLRKQGIS 366
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 28.4 bits (64), Expect = 7.6
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE--EEGEEEGRRRRRR 68
KK KK ++ + +++ ++ K+E + E + + + E E EE EE E+G + ++
Sbjct: 379 KKYKKLKRAVEAVEEQIEETKEEIEYLESVEAQLENAESLEDLEEIREELIEQGYLKEKK 438
Query: 69 RRRRRKKER 77
R++++KK++
Sbjct: 439 RKKKKKKKK 447
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 28.6 bits (64), Expect = 7.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
E + +++ K+ KK +KK ++K K K KKE K +E+
Sbjct: 436 ESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESVKSQEDN 482
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 28.4 bits (63), Expect = 7.8
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
++ EKK E + + +E+ K K K + + K + +KE++ KE K
Sbjct: 119 LEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAK 163
>gnl|CDD|219186 pfam06810, Phage_GP20, Phage minor structural protein GP20. This
family consists of several phage minor structural
protein GP20 sequences of around 180 residues in
length. The function of this family is unknown.
Length = 156
Score = 27.7 bits (62), Expect = 7.9
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKK----KEKKKKEEKKKEKKKKEEEEGEEE 55
K +K E++ KK+ K ++K+ ++ KKK +E +KK EK K++ K +EE E +
Sbjct: 21 KLDKANEERDSLKKQLKNRDKQIEDLKKKVKDNEELQKKIEKLKQQNKTAKEEYEAK 77
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 28.6 bits (64), Expect = 8.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
K + KK K + K EEEE EE + EE+G
Sbjct: 114 KGDQSASAKKAKGRGRHASKLTEEEEDEEYLKEEEDG 150
>gnl|CDD|192481 pfam10197, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved
region at the N-terminal end of a family of proteins
referred to as CIRs (CBF1-interacting co-repressors).
CBF1 (centromere-binding factor 1) acts as a
transcription factor that causes repression by binding
specifically to GTGGGAA motifs in responsive promoters,
and it requires CIR as a co-repressor. CIR binds to
histone deacetylase and to SAP30 and serves as a linker
between CBF1 and the histone deacetylase complex.
Length = 37
Score = 25.3 bits (56), Expect = 8.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGE 53
K +EK + E+K EE+KK ++ ++E E E
Sbjct: 7 MKNQEKVWEAEQKALEEQKKIEELRKEIEEE 37
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 28.5 bits (65), Expect = 8.1
Identities = 8/37 (21%), Positives = 24/37 (64%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKK 45
K+ E++KE+K++ +++ + ++ K+ +K K+ +
Sbjct: 477 GKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDVR 513
>gnl|CDD|216134 pfam00816, Histone_HNS, H-NS histone family.
Length = 92
Score = 26.4 bits (59), Expect = 8.1
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG---EEEEEGEEEGRRRRRRRRRR 72
+E + +K +++ + K ++ E ++ E G EE G + + +++R
Sbjct: 1 EELEALIEKLEKEIEAARKAERAAALAEIRELAAEYGLTLEELLGGAAKKKAKKKRAPVP 60
Query: 73 RK 74
K
Sbjct: 61 AK 62
>gnl|CDD|200352 TIGR04101, CCGSCS, CCGSCS motif protein. This protein family,
with average protein length about 58 residues, occurs
in several marine bacteria, such as Shewanella benthica
KT99, Marinobacter sp. ELB17, and Photobacterium
profundum 3TCK. The striking feature is a C-terminal
motif CCGSCS, which (perhaps coincidentally) resembles
conserved core motif [LC]CGSC shared by two
methanobactin precursors (see TIGR04071). There is no
detectable conserved gene region for these proteins.
Length = 59
Score = 25.7 bits (56), Expect = 8.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 6 KKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEG 52
KK KKK+ ++ K E + ++ ++ E++ + +++KK K E G
Sbjct: 6 KKIFKKKKSAAKQVKLELEAIQQAQQSEEQVAADIEEKKKPKHGEPG 52
>gnl|CDD|206307 pfam14138, COX16, Cytochrome c oxidase assembly protein COX16.
This family represents homologues of COX16 which has
been shown to be involved in assembly of cytochrome
oxidase. Protein in this family are typically between
106 and 134 amino acids in length.
Length = 79
Score = 26.3 bits (59), Expect = 8.3
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEE 51
+ E++ K ++ +++E K KK++K ++E + + ++ E
Sbjct: 25 RYERRDRKVQQLEEEEALKLLKKRRKVDLEEEYYRLQGLDIDDWE 69
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 27.9 bits (62), Expect = 8.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
E E + E K E + K+K + + ++ + K + E E E E+E EEE
Sbjct: 217 ENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEE 273
>gnl|CDD|221753 pfam12753, Nro1, Nuclear pore complex subunit Nro1. In fission
yeast, this protein is a positive regulator of the
stability of Sre1N, the sterol regulatory
element-binding protein which is an ER membrane-bound
transcription factor that controls adaptation to low
oxygen-growth. In addition, the fission yeast Nro1 is a
direct inhibitor of a protein that inhibits SreN1
degradation, Ofd1 (an oxoglutamate deoxygenase). The
outcome of this reactivity is that Ofd1 acts as an
oxygen sensor that regulates the binding of Nro1 to
Ofd1 to control the stability of Sre1N. Solution of the
structure of Nro1 reveals it to be made up of a number
of TPR coils.
Length = 401
Score = 28.3 bits (63), Expect = 8.4
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 23 KKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K K KK+K E E K+ + + E +E + +
Sbjct: 10 KAAKLKKQKTESGNSEPSKESTPEANQITVELDEVYDAD 48
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is
a small protein module with a triple-stranded
beta-sheet fold. This is a family of WW domain binding
proteins.
Length = 78
Score = 26.1 bits (58), Expect = 8.6
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
+K++KKKE KK K +++ +++ K KK + + + + K + EE G+
Sbjct: 10 YRKEQKKKELKKNKAERQARREAKLAKKNPDRLQRELDKLKAQ-----------EESGKL 58
Query: 65 RRRRRRRRRKKEREKKRSSR 84
R +++ +K E++ +
Sbjct: 59 RPVEKQKLKKLEKDLDAVKK 78
>gnl|CDD|217554 pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain.
Relaxases/mobilisation proteins are required for the
horizontal transfer of genetic information contained on
plasmids that occurs during bacterial conjugation. The
relaxase, in conjunction with several auxiliary
proteins, forms the relaxation complex or relaxosome.
Relaxases nick duplex DNA in a specific manner by
catalyzing trans-esterification.
Length = 240
Score = 27.7 bits (62), Expect = 8.6
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Query: 14 KKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRR 73
+ + + + +K K +K + K+E ++ KK + + E+ E + RR
Sbjct: 146 EGNPRNRYTEAEKGKAEKNKTSYKDEIRQALKKAQAHASDFEDFKEALKEKGLEIRRDTG 205
Query: 74 KKEREKKRSSRRKPFKLSEISATRPDSTID 103
K K + S++ I+
Sbjct: 206 KFLTY-KGDDENTKVRGSKLGRDYSKGKIE 234
>gnl|CDD|173966 cd08047, TAF7, TATA Binding Protein (TBP) Associated Factor 7
(TAF7) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 7 (TAF7) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryotes. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
preinitiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs are named after their
electrophoretic mobility in polyacrylamide gels in
different species. A new, unified nomenclature has been
suggested for the pol II TAFs to show the relationship
between TAF orthologs and paralogs. Several hypotheses
are proposed for TAFs functions such as serving as
activator-binding sites, core-promoter recognition or a
role in essential catalytic activity. Each TAF, with the
help of a specific activator, is required only for
expression of subset of genes and is not universally
involved for transcription as are GTFs. TAF7 is involved
in the regulation of the transition from PIC assembly to
initiation and elongation. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; the HFD is the interaction motif involved
in heterodimerization of the core histones and their
assembly into nucleosome octamers.
Length = 162
Score = 27.6 bits (62), Expect = 8.6
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 1 EKKKEKKKEKKKEKKKEKK-----------KKEKKKKEKKKKKEKKKKEEKKKEKKKKEE 49
+ +KE K+ K +K K KK K +K++ +K +K + E+ +++ K+
Sbjct: 89 DSEKEAKEAKLDKKDKPKKFEYPHGLTPPMKNVRKRRFRKTPSKKIAEIEEVEKEVKRLL 148
Query: 50 EEGEEEEEGEEEG 62
+E E E E
Sbjct: 149 KEDTEAVSVEYEV 161
>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 444
Score = 28.0 bits (63), Expect = 8.7
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 26 KEKKKKKEKKKKEEKKKEK------KKKEEEEGEEEEEGEEEGRRRRRRRRRR 72
+E+K +K K K EE +E+ + G+ E + E R + R++ R
Sbjct: 112 REEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLR 164
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 27.7 bits (62), Expect = 8.8
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEE--EEG 58
K +K ++E+ ++ + ++++ E ++ ++ EE +E ++ + G EE EEG
Sbjct: 28 PKVAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEG 87
Query: 59 EEEGRRRRR 67
+EEGR R
Sbjct: 88 QEEGRVLER 96
>gnl|CDD|220245 pfam09444, MRC1, MRC1-like domain. This putative domain is found
to be the most conserved region in mediator of
replication checkpoint protein 1.
Length = 145
Score = 27.3 bits (61), Expect = 8.8
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 9 EKKKEKKKEKKKKEKKKKEKKKKKEKKKKE----------EKKKEKKKKEEEEGEEEEEG 58
E KEK + + K+ +E+++ EK+ ++ +++ K + E + E+E
Sbjct: 47 EYSKEKAENDELAAKRAEEEREDDEKEVEKLLDDITTGGLRRRRGKNGLDLELSDSEDEL 106
Query: 59 EEEGRRRRRRRRRRRKK 75
+ R +RR R++
Sbjct: 107 LQRRRLKRRELALMRQR 123
>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 28.1 bits (63), Expect = 8.8
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEE 61
K K K +K K E + K+ + +K+K E + +++ +++ EE +E + +
Sbjct: 446 KGAKIKIQKALKSAENPLQSLKEFKPSNEKKKIDTESTAEMLEEEAKKDDEEVQETQLK 504
>gnl|CDD|218611 pfam05499, DMAP1, DNA methyltransferase 1-associated protein 1
(DMAP1). DNA methylation can contribute to
transcriptional silencing through several
transcriptionally repressive complexes, which include
methyl-CpG binding domain proteins (MBDs) and histone
deacetylases (HDACs). The chief enzyme that maintains
mammalian DNA methylation, DNMT1, can also establish a
repressive transcription complex. The non-catalytic
amino terminus of DNMT1 binds to HDAC2 and DMAP1 (for
DNMT1 associated protein), and can mediate
transcriptional repression. DMAP1 has intrinsic
transcription repressive activity, and binds to the
transcriptional co-repressor TSG101. DMAP1 is targeted
to replication foci through interaction with the far N
terminus of DNMT1 throughout S phase, whereas HDAC2
joins DNMT1 and DMAP1 only during late S phase,
providing a platform for how histones may become
deacetylated in heterochromatin following replication.
Length = 175
Score = 27.5 bits (61), Expect = 8.9
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 27 EKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRRRRRRRRRKKEREKKRSSR 84
E +K + +KK+ EKK + +K +++ G R+R ++ +KK +K S+
Sbjct: 8 ELRKIEARKKEREKKAQDLQKLITAADQQAAGFSTAEARKREKKLPKKKIPQKPGPSK 65
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 28.1 bits (62), Expect = 9.0
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 5 EKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRR 64
E + K+KE K E ++++ + ++K+K KEE KE + + E G +
Sbjct: 29 ESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVDRRTHTEVGSGSSAK 88
Query: 65 RRRRR 69
R
Sbjct: 89 GSGER 93
>gnl|CDD|218270 pfam04795, PAPA-1, PAPA-1-like conserved region. Family of
proteins with a conserved region found in PAPA-1, a
PAP-1 binding protein.
Length = 89
Score = 26.5 bits (59), Expect = 9.0
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 EKKKEKKKEKKK--EKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEE 57
K+ E + +K EK+ E++K E K KK+ +KK+E+K K+ +K+ +E E
Sbjct: 4 LKRAEAARRRKNQSEKRAEEEKMETINKLLKKQARRKKREDKIKKGDEKKAQEKAARAE 62
>gnl|CDD|223164 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription].
Length = 808
Score = 28.4 bits (64), Expect = 9.3
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 7 KKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEGRRRR 66
+ EK + + + E K +K E E EE +
Sbjct: 104 EAYVVLGTDLEKIQLLNETEYVYDSFCAHCGAEAIKILLEKP---DLETEREEETLSPTK 160
Query: 67 RRRRRRRKKEREKKRSSRRKP 87
++ +R K + S +P
Sbjct: 161 VKKLLKRLKVVDAFLLSGNRP 181
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 26.4 bits (59), Expect = 9.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 11 KKEKKKEKKKKEKKKKEKKKKKEKK 35
K+E++K+KKK KK + ++ KK+
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 28.2 bits (64), Expect = 9.3
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 1 EKKKEKKKEKKKEK-----KKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKE 48
+ + + EK K K+ +K +K ++KK E + + KK K +++
Sbjct: 206 DDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREK 258
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of
the eukaryotic cytosol and of the Archaea are more
similar to glutaminyl-tRNA synthetases than to
bacterial glutamyl-tRNA synthetases. This model models
just the eukaryotic cytosolic and archaeal forms of the
enzyme. In some eukaryotes, the glutamyl-tRNA
synthetase is part of a longer, multifunctional
aminoacyl-tRNA ligase. In many species, the charging of
tRNA(gln) proceeds first through misacylation with Glu
and then transamidation. For this reason, glutamyl-tRNA
synthetases, including all known archaeal enzymes (as
of 2010) may act on both tRNA(gln) and tRNA(glu)
[Protein synthesis, tRNA aminoacylation].
Length = 556
Score = 28.2 bits (63), Expect = 9.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 26 KEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGE 59
+E+K+ ++ + KKKEKK+K E + GE
Sbjct: 60 EEQKELMKRLGLDIKKKEKKRKGLRELPGAKMGE 93
>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis. RRF is believed to bind the ribosome at the
A-site in a manner that mimics tRNA, but the specific
mechanisms remain unclear. RRF is essential for
bacterial growth. It is not necessary for cell growth
in archaea or eukaryotes, but is found in mitochondria
or chloroplasts of some eukaryotic species.
Length = 179
Score = 27.6 bits (62), Expect = 9.6
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 2 KKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKK 47
K KK EK+KE +++ KK ++ +K + KK +E K K+K+
Sbjct: 132 NDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSKEKE 177
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 27.6 bits (61), Expect = 9.6
Identities = 17/82 (20%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 EKKKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKK---EEKKKEKKKKEEEEGEEEEE 57
EK+ K++EK ++ E ++++ ++ + ++ +E ++ K+K +++E E +E
Sbjct: 5 EKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEY 64
Query: 58 GEEEGRRRRRRRRRRRKKEREK 79
+ R + R++ E+EK
Sbjct: 65 LDIAQRLKAEFENYRKRTEKEK 86
>gnl|CDD|107164 PHA02277, PHA02277, hypothetical protein.
Length = 150
Score = 27.4 bits (60), Expect = 9.9
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 16 KEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEE 60
+EK K K K +K++ K+K+E+ ++K+++E ++ E + E+
Sbjct: 96 QEKVGKAKDKLNEKREAYLKEKQEELRQKQQEEAQKKTESDSNEK 140
>gnl|CDD|227463 COG5134, COG5134, Uncharacterized conserved protein [Function
unknown].
Length = 272
Score = 27.7 bits (61), Expect = 9.9
Identities = 17/101 (16%), Positives = 38/101 (37%)
Query: 3 KKEKKKEKKKEKKKEKKKKEKKKKEKKKKKEKKKKEEKKKEKKKKEEEEGEEEEEGEEEG 62
++ K + EK E E +K+ ++K +K + + + +
Sbjct: 116 NEDPAKAENVEKVPESDAIEALEKQLTQQKSEKHNSSAINFIDELNKRLWSDPFVSSQRL 175
Query: 63 RRRRRRRRRRRKKEREKKRSSRRKPFKLSEISATRPDSTID 103
R++ R R++ KK+ K S + + +I + D
Sbjct: 176 RKQFRERKKIEKKQEAKDLSLKNRAALDIDILPSSSDKDKA 216
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.375
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,301,536
Number of extensions: 2053244
Number of successful extensions: 41897
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23895
Number of HSP's successfully gapped: 4750
Length of query: 395
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 296
Effective length of database: 6,546,556
Effective search space: 1937780576
Effective search space used: 1937780576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.7 bits)