Query psy2868
Match_columns 289
No_of_seqs 80 out of 82
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 18:57:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924|consensus 27.0 3.6E+02 0.0078 30.5 9.0 15 248-262 636-650 (1102)
2 TIGR02737 caa3_CtaG cytochrome 9.0 2.3E+02 0.005 26.9 2.1 22 87-109 61-82 (281)
3 PF13978 DUF4223: Protein of u 9.0 1.4E+02 0.003 23.0 0.5 13 276-288 20-32 (56)
4 PF02781 G6PD_C: Glucose-6-pho 7.7 1.8E+02 0.0039 27.9 0.8 10 103-112 47-56 (293)
5 PRK05722 glucose-6-phosphate 1 6.6 2.3E+02 0.0051 29.1 1.1 13 102-114 241-253 (495)
6 COG3336 Predicted membrane pro 6.1 2.2E+02 0.0047 28.1 0.5 22 85-106 60-81 (299)
7 PF09678 Caa3_CtaG: Cytochrome 6.1 4E+02 0.0087 24.2 2.1 26 87-112 37-62 (244)
8 TIGR00871 zwf glucose-6-phosph 6.0 3E+02 0.0065 28.3 1.4 12 104-115 234-245 (482)
9 PF09963 DUF2197: Uncharacteri 5.8 2.4E+02 0.0052 21.5 0.5 7 16-22 28-34 (56)
10 PRK06630 hypothetical protein; 5.7 3E+02 0.0064 23.3 1.0 6 255-260 38-43 (99)
No 1
>KOG1924|consensus
Probab=27.03 E-value=3.6e+02 Score=30.53 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=7.4
Q ss_pred ceeeeeeeeeeeeee
Q psy2868 248 PLHISHVTRWVSYLI 262 (289)
Q Consensus 248 Pl~~s~~~r~v~~~~ 262 (289)
|.-+|.=-=||.-.|
T Consensus 636 p~d~s~~cFWvkv~E 650 (1102)
T KOG1924|consen 636 PRDLSENCFWVKVNE 650 (1102)
T ss_pred ccccCccceeeecch
Confidence 333555455665444
No 2
>TIGR02737 caa3_CtaG cytochrome c oxidase assembly factor CtaG. Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as in Bacillus subtilis.
Probab=9.03 E-value=2.3e+02 Score=26.89 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=17.4
Q ss_pred cccchHHHhhhhHHHHHHhhhhH
Q psy2868 87 TTCSHIHMLQNHLFTLHMLQNHL 109 (289)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ 109 (289)
.++|=+..+...+|+.||+| |+
T Consensus 61 a~~spl~~~~~~lFs~HMvq-Hl 82 (281)
T TIGR02737 61 VKGSPIDLLGHIMFTAHMVQ-MA 82 (281)
T ss_pred HHhCcHHHHHHHHHHHHHHH-HH
Confidence 45566788888999999999 54
No 3
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=9.02 E-value=1.4e+02 Score=22.98 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=11.2
Q ss_pred ccccccccccccC
Q psy2868 276 KSGEIENTDRDCK 288 (289)
Q Consensus 276 ~~~~~~~~~~~~~ 288 (289)
-.|.|||.+.+|.
T Consensus 20 CTG~v~Nk~knCs 32 (56)
T PF13978_consen 20 CTGHVENKEKNCS 32 (56)
T ss_pred ccceeeccCCCCc
Confidence 3699999999995
No 4
>PF02781 G6PD_C: Glucose-6-phosphate dehydrogenase, C-terminal domain; InterPro: IPR022675 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the C-terminal domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 1QKI_E 2BH9_A 2BHL_A 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A ....
Probab=7.66 E-value=1.8e+02 Score=27.93 Aligned_cols=10 Identities=60% Similarity=0.966 Sum_probs=5.0
Q ss_pred HHhhhhHHHH
Q psy2868 103 HMLQNHLFTL 112 (289)
Q Consensus 103 ~~~~~~~~~~ 112 (289)
.|+||||+.|
T Consensus 47 DmvQNHllQl 56 (293)
T PF02781_consen 47 DMVQNHLLQL 56 (293)
T ss_dssp HTTTTHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 5
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=6.65 E-value=2.3e+02 Score=29.09 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=8.3
Q ss_pred HHHhhhhHHHHhh
Q psy2868 102 LHMLQNHLFTLHM 114 (289)
Q Consensus 102 ~~~~~~~~~~~~~ 114 (289)
-.|+||||+.|=.
T Consensus 241 RDmvQNHLlQlLa 253 (495)
T PRK05722 241 RDMVQNHLLQLLA 253 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 4677888765533
No 6
>COG3336 Predicted membrane protein [Function unknown]
Probab=6.12 E-value=2.2e+02 Score=28.10 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=0.0
Q ss_pred eecccchHHHhhhhHHHHHHhh
Q psy2868 85 YKTTCSHIHMLQNHLFTLHMLQ 106 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ 106 (289)
|-+.||=++++-...|++||.|
T Consensus 60 ~~a~~Spv~~~g~~mfs~HMa~ 81 (299)
T COG3336 60 YGAVGSPVRAYGHAMFSLHMAE 81 (299)
T ss_pred HHHhCCchhhhccccHHHHHHH
No 7
>PF09678 Caa3_CtaG: Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG); InterPro: IPR019108 This entry represents the CtaG protein required for the assembly of active caa3-type cytochrome c oxidase in Bacillus subtilis, and related proteins.
Probab=6.07 E-value=4e+02 Score=24.17 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=0.0
Q ss_pred cccchHHHhhhhHHHHHHhhhhHHHH
Q psy2868 87 TTCSHIHMLQNHLFTLHMLQNHLFTL 112 (289)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (289)
.++|=+..+...+|+.||+|.=+..+
T Consensus 37 a~~spl~~~~~~lfs~HmvqhllL~~ 62 (244)
T PF09678_consen 37 ALGSPLDVYAHYLFSAHMVQHLLLMM 62 (244)
T ss_pred HHhCcHHHHhhhhHHHHHHHHHHHHH
No 8
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=5.96 E-value=3e+02 Score=28.26 Aligned_cols=12 Identities=58% Similarity=0.827 Sum_probs=0.0
Q ss_pred HhhhhHHHHhhh
Q psy2868 104 MLQNHLFTLHML 115 (289)
Q Consensus 104 ~~~~~~~~~~~~ 115 (289)
|+||||+.|=.|
T Consensus 234 mvQNHLlQlL~l 245 (482)
T TIGR00871 234 MVQNHLLQLLCL 245 (482)
T ss_pred HHHhHHHHHHHH
No 9
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=5.76 E-value=2.4e+02 Score=21.51 Aligned_cols=7 Identities=57% Similarity=1.820 Sum_probs=0.0
Q ss_pred CceEEEE
Q psy2868 16 PVHTFIC 22 (289)
Q Consensus 16 ~~~~~~~ 22 (289)
|+|||||
T Consensus 28 Pi~tYmC 34 (56)
T PF09963_consen 28 PIHTYMC 34 (56)
T ss_pred CCcceeC
No 10
>PRK06630 hypothetical protein; Provisional
Probab=5.66 E-value=3e+02 Score=23.32 Aligned_cols=6 Identities=50% Similarity=0.971 Sum_probs=0.0
Q ss_pred eeeeee
Q psy2868 255 TRWVSY 260 (289)
Q Consensus 255 ~r~v~~ 260 (289)
+|||+|
T Consensus 38 rRWViY 43 (99)
T PRK06630 38 RRFVIY 43 (99)
T ss_pred eEEEEe
Done!