Query psy2868
Match_columns 289
No_of_seqs 80 out of 82
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 18:57:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tf6_A Protein (transcription 16.3 55 0.0019 25.3 1.5 62 2-72 60-130 (190)
2 2rpc_A Zinc finger protein ZIC 12.2 58 0.002 24.3 0.5 40 29-73 74-117 (155)
3 1rji_A BMKX, potassium channel 11.5 70 0.0024 21.0 0.7 8 282-289 8-15 (31)
4 2epa_A Krueppel-like factor 10 10.1 1.1E+02 0.0039 19.7 1.4 11 30-40 32-42 (72)
5 1ubd_C Protein (YY1 zinc finge 9.4 48 0.0017 23.6 -0.7 61 2-73 23-89 (124)
6 2j7j_A Transcription factor II 7.7 1.6E+02 0.0055 19.1 1.4 40 29-73 15-58 (85)
7 1f2i_G Fusion of N-terminal 17 7.0 2.2E+02 0.0076 18.2 1.8 13 29-41 33-45 (73)
8 1dpg_A G6PD, glucose 6-phospha 5.5 1.7E+02 0.0059 28.8 0.8 14 102-115 234-247 (485)
9 2bh9_A G6PD, glucose-6-phospha 5.2 1.8E+02 0.0063 28.7 0.8 14 102-115 231-244 (489)
10 4e9i_A Glucose-6-phosphate 1-d 4.8 2E+02 0.0069 28.8 0.8 14 102-115 289-302 (541)
No 1
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=16.27 E-value=55 Score=25.35 Aligned_cols=62 Identities=23% Similarity=0.441 Sum_probs=29.4
Q ss_pred ccccccccccccCCCceEEEEeecccc----hHHHhhhcc-cccccccCCCceEEEEe----ecccchHHHhhhcccccc
Q psy2868 2 LQNHLFTHSYVTKPPVHTFICYKTTCS----HIHMLQNHL-FTHSYVTKPPVHTFICY----KTTCSHIHMLQNHLFTHS 72 (289)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 72 (289)
|++|+.+|.-. -.|.|-...|. -.-.|++|+ ..|.--.++ |.|- ....+-.-.|++|+.+|.
T Consensus 60 l~~H~~~h~~~-----~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~----~~C~~~~C~k~f~~~~~L~~H~~~H~ 130 (190)
T 1tf6_A 60 LTRHSLTHTGE-----KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV----YVCHFENCGKAFKKHNQLKVHQFSHT 130 (190)
T ss_dssp HHHHHTTTTTC-----CCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSC----CEECSSSSCEECSSHHHHHHHHGGGS
T ss_pred HHHHHHHccCC-----CceeCCCCCCCCccCCHHHHHHHHHHhcCCCcce----eeCCCCCCccccCCHHHHHHHHHHhC
Confidence 45566665421 12555432332 345566666 555322222 4441 112234556777777765
No 2
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=12.19 E-value=58 Score=24.26 Aligned_cols=40 Identities=28% Similarity=0.218 Sum_probs=26.0
Q ss_pred hHHHhhhcccccccccCCCceEEEEee----cccchHHHhhhccccccc
Q psy2868 29 HIHMLQNHLFTHSYVTKPPVHTFICYK----TTCSHIHMLQNHLFTHSY 73 (289)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 73 (289)
..-.|+.|+.+|.-. | .|.|-. ........|+.|+.+|.-
T Consensus 74 ~~~~l~~H~~~h~~~-~----~~~C~~~~C~~~f~~~~~L~~H~~~h~~ 117 (155)
T 2rpc_A 74 AKYKLVNHIRVHTGE-K----PFPCPFPGCGKIFARSENLKIHKRTHTG 117 (155)
T ss_dssp SHHHHHHHTHHHHCC-C----SEECSCTTTCCEESCHHHHHHHHTTTCS
T ss_pred CHHHHHHHHHhcCCC-C----cccCCcCCCCCccCCHHHHHHHHHhhCC
Confidence 456788898888532 2 266643 233456778899888863
No 3
>1rji_A BMKX, potassium channel toxin KX; 3-10 helix, beta sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1wt8_A
Probab=11.46 E-value=70 Score=20.96 Aligned_cols=8 Identities=75% Similarity=1.311 Sum_probs=6.3
Q ss_pred ccccccCC
Q psy2868 282 NTDRDCKM 289 (289)
Q Consensus 282 ~~~~~~~~ 289 (289)
.|||||-|
T Consensus 8 kt~~~cvm 15 (31)
T 1rji_A 8 KTDRDCVM 15 (31)
T ss_dssp SSGGGGTT
T ss_pred cccccEEE
Confidence 47899877
No 4
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=10.09 E-value=1.1e+02 Score=19.70 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=5.8
Q ss_pred HHHhhhccccc
Q psy2868 30 IHMLQNHLFTH 40 (289)
Q Consensus 30 ~~~~~~~~~~~ 40 (289)
.-.|+.|+.+|
T Consensus 32 ~~~L~~H~~~H 42 (72)
T 2epa_A 32 SSHLKAHTRTH 42 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 34455555555
No 5
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=9.44 E-value=48 Score=23.63 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=35.9
Q ss_pred ccccccccccccCCCceEEEEee--cccchHHHhhhcccccccccCCCceEEEEee----cccchHHHhhhccccccc
Q psy2868 2 LQNHLFTHSYVTKPPVHTFICYK--TTCSHIHMLQNHLFTHSYVTKPPVHTFICYK----TTCSHIHMLQNHLFTHSY 73 (289)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 73 (289)
|++|+.+|. .+ .|.|-. ..-.....|+.|+.+|.-. | .|.|-- ...+-...|++|+.+|.-
T Consensus 23 l~~H~~~h~--~~----~~~C~~C~~~f~~~~~l~~H~~~h~~~-~----~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 89 (124)
T 1ubd_C 23 MRKHLHTHG--PR----VHVCAECGKAFVESSKLKRHQLVHTGE-K----PFQCTFEGCGKRFSLDFNLRTHVRIHTG 89 (124)
T ss_dssp HHHHHGGGS--CC----CEECTTTCCEESSHHHHHHHGGGTSCC-C----CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred HHHHHHHcC--CC----CeECCCCCchhCCHHHHHHHHHHcCCC-C----CeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence 566777771 22 355531 1123466788898888632 2 366632 233556788899888864
No 6
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=7.69 E-value=1.6e+02 Score=19.06 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=25.5
Q ss_pred hHHHhhhcccccccccCCCceEEEEee----cccchHHHhhhccccccc
Q psy2868 29 HIHMLQNHLFTHSYVTKPPVHTFICYK----TTCSHIHMLQNHLFTHSY 73 (289)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 73 (289)
..-.|+.|+.+|.-. |+ |.|-. ...+....|++|+.+|.-
T Consensus 15 ~~~~l~~H~~~h~~~-~~----~~C~~~~C~~~f~~~~~l~~H~~~h~~ 58 (85)
T 2j7j_A 15 KHNQLKVHQFSHTQQ-LP----YECPHEGCDKRFSLPSRLKRHEKVHAG 58 (85)
T ss_dssp SHHHHHHHHHHHHTT-CC----EECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhCCC-CC----eeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence 456788888877532 22 66633 233456778888888764
No 7
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=7.00 E-value=2.2e+02 Score=18.22 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=7.2
Q ss_pred hHHHhhhcccccc
Q psy2868 29 HIHMLQNHLFTHS 41 (289)
Q Consensus 29 ~~~~~~~~~~~~~ 41 (289)
..-.|+.|+.+|.
T Consensus 33 ~~~~l~~H~~~h~ 45 (73)
T 1f2i_G 33 RSDELTRHIRIHT 45 (73)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 3455666665554
No 8
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A* 1h9b_A 2dpg_A*
Probab=5.47 E-value=1.7e+02 Score=28.80 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=8.7
Q ss_pred HHHhhhhHHHHhhh
Q psy2868 102 LHMLQNHLFTLHML 115 (289)
Q Consensus 102 ~~~~~~~~~~~~~~ 115 (289)
-.|+||||+.|=.|
T Consensus 234 RDmvQNHLlQlL~l 247 (485)
T 1dpg_A 234 LDMIQNHTMQIVGW 247 (485)
T ss_dssp HHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45777777665444
No 9
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A*
Probab=5.20 E-value=1.8e+02 Score=28.67 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=8.5
Q ss_pred HHHhhhhHHHHhhh
Q psy2868 102 LHMLQNHLFTLHML 115 (289)
Q Consensus 102 ~~~~~~~~~~~~~~ 115 (289)
-.|+||||+.|=.|
T Consensus 231 RDmvQNHLlQlL~l 244 (489)
T 2bh9_A 231 RDVMQNHLLQMLCL 244 (489)
T ss_dssp HHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45777777655443
No 10
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=4.80 E-value=2e+02 Score=28.75 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=9.1
Q ss_pred HHHhhhhHHHHhhh
Q psy2868 102 LHMLQNHLFTLHML 115 (289)
Q Consensus 102 ~~~~~~~~~~~~~~ 115 (289)
-.|+||||+.|=.|
T Consensus 289 RDmvQNHLlQlL~L 302 (541)
T 4e9i_A 289 RDVIQNHLTQILSL 302 (541)
T ss_dssp HHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35778887765544
Done!