RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2868
(289 letters)
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 41.3 bits (96), Expect = 2e-04
Identities = 17/115 (14%), Positives = 26/115 (22%), Gaps = 3/115 (2%)
Query: 135 VTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSH 194
+ H H + SH+ P + VT PPV PP
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVIPS---ASVTSAASDFLAALHPPVTVPDPAPPPPPAPA 57
Query: 195 VTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPL 249
PP + + T P + P + +
Sbjct: 58 AGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAV 112
Score = 40.5 bits (94), Expect = 5e-04
Identities = 17/114 (14%), Positives = 25/114 (21%), Gaps = 3/114 (2%)
Query: 125 VTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSH 184
+ H H + SH+ P + VT PPV PP
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVIPS---ASVTSAASDFLAALHPPVTVPDPAPPPPPAPA 57
Query: 185 VTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKP 238
PP + + T P + P +
Sbjct: 58 AGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRA 111
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 30.6 bits (67), Expect = 0.60
Identities = 13/109 (11%), Positives = 25/109 (22%), Gaps = 10/109 (9%)
Query: 117 NHLFTHSYVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVT 176
N++ + + S + P + K P + + +
Sbjct: 396 NYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPV 455
Query: 177 KPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHV 225
KP P + + P P + T P H
Sbjct: 456 KPT-----APTKPTYETEKPLKP-----APVAPNYEKEPTPPTRLEHHH 494
Score = 30.6 bits (67), Expect = 0.63
Identities = 14/124 (11%), Positives = 27/124 (21%), Gaps = 10/124 (8%)
Query: 122 HSYVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVH 181
+S+ + S + + S + P + K P +
Sbjct: 381 NSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRA 440
Query: 182 TSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVH 241
+ + KP P + + P P + T P
Sbjct: 441 VNVPKVTKEKPTPPVKPT-----APTKPTYETEKPLKP-----APVAPNYEKEPTPPTRL 490
Query: 242 TSHV 245
H
Sbjct: 491 EHHH 494
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 29.5 bits (67), Expect = 1.2
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 186 TKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHV 245
PP + T P T V P + P +PP HTS P + +
Sbjct: 3 QLPPAPDDYPTFPDTSTWPVVFPEL-------PAAPYGGPCRPPQHTSKAAAPRIPADRL 55
Query: 246 TKPLHI 251
P H+
Sbjct: 56 --PNHV 59
Score = 28.3 bits (64), Expect = 2.4
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 124 YVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTS 183
+ PP + T P T V P + P +PP HTS P +
Sbjct: 1 FPQLPPAPDDYPTFPDTSTWPVVFPEL-------PAAPYGGPCRPPQHTSKAAAPRIPAD 53
Query: 184 HVTKPPVH 191
+ P H
Sbjct: 54 RL---PNH 58
Score = 27.6 bits (62), Expect = 5.2
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 136 TKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHV 195
PP + T P T V P + P +PP HTS P + +
Sbjct: 3 QLPPAPDDYPTFPDTSTWPVVFPEL-------PAAPYGGPCRPPQHTSKAAAPRIPADRL 55
Query: 196 TKPPVH 201
P H
Sbjct: 56 ---PNH 58
Score = 27.6 bits (62), Expect = 5.2
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 146 TKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHV 205
PP + T P T V P + P +PP HTS P + +
Sbjct: 3 QLPPAPDDYPTFPDTSTWPVVFPEL-------PAAPYGGPCRPPQHTSKAAAPRIPADRL 55
Query: 206 TKPPVH 211
P H
Sbjct: 56 ---PNH 58
Score = 27.6 bits (62), Expect = 5.2
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 156 TKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHV 215
PP + T P T V P + P +PP HTS P + +
Sbjct: 3 QLPPAPDDYPTFPDTSTWPVVFPEL-------PAAPYGGPCRPPQHTSKAAAPRIPADRL 55
Query: 216 TKPPVH 221
P H
Sbjct: 56 ---PNH 58
Score = 27.6 bits (62), Expect = 5.2
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 166 TKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHV 225
PP + T P T V P + P +PP HTS P + +
Sbjct: 3 QLPPAPDDYPTFPDTSTWPVVFPEL-------PAAPYGGPCRPPQHTSKAAAPRIPADRL 55
Query: 226 TKPPVH 231
P H
Sbjct: 56 ---PNH 58
Score = 27.6 bits (62), Expect = 5.2
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 176 TKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHV 235
PP + T P T V P + P +PP HTS P + +
Sbjct: 3 QLPPAPDDYPTFPDTSTWPVVFPEL-------PAAPYGGPCRPPQHTSKAAAPRIPADRL 55
Query: 236 TKPPVH 241
P H
Sbjct: 56 ---PNH 58
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 29.4 bits (65), Expect = 1.4
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 3/70 (4%)
Query: 110 FTLHMLQNHLFTHSYVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPP 169
+ +M + + ++ V PV T P KP
Sbjct: 283 ISFNMASSKSGNIWFAFNSNINAIGVPTKPVAP---TAPTQPMYETEKPLEPAPVAPSYE 339
Query: 170 VHTSHVTKPP 179
+ K P
Sbjct: 340 NEPTPPVKTP 349
Score = 29.0 bits (64), Expect = 2.0
Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 3/50 (6%)
Query: 140 VHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPP 189
++ V PV T P KP + K P
Sbjct: 303 INAIGVPTKPVAP---TAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 29.0 bits (64), Expect = 2.0
Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 3/50 (6%)
Query: 150 VHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPP 199
++ V PV T P KP + K P
Sbjct: 303 INAIGVPTKPVAP---TAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 29.0 bits (64), Expect = 2.0
Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 3/50 (6%)
Query: 160 VHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPP 209
++ V PV T P KP + K P
Sbjct: 303 INAIGVPTKPVAP---TAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 29.0 bits (64), Expect = 2.0
Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 3/50 (6%)
Query: 170 VHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPP 219
++ V PV T P KP + K P
Sbjct: 303 INAIGVPTKPVAP---TAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 29.0 bits (64), Expect = 2.0
Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 3/50 (6%)
Query: 180 VHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPP 229
++ V PV T P KP + K P
Sbjct: 303 INAIGVPTKPVAP---TAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 29.0 bits (64), Expect = 2.0
Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 3/50 (6%)
Query: 190 VHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPP 239
++ V PV T P KP + K P
Sbjct: 303 INAIGVPTKPVAP---TAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 9.8
Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 18/122 (14%)
Query: 57 TCSHIHMLQNHL---FTHSYVTKPPVHTFICYKTTCSHIHMLQNHL-FTLHMLQNHLF-- 110
T S Q L F P F + ++ L + +++
Sbjct: 24 TASFFIASQ--LQEQFNKILPE--PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 111 TLHMLQNHL--FTHSYVTKPPVHT------SHVTKPPVHTSHVTKPPVHTSHVTKPPVHT 162
+L L F + Y+ +H V T + K + + K P
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 163 SH 164
Sbjct: 140 KS 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.131 0.436
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,178,463
Number of extensions: 219980
Number of successful extensions: 558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 42
Length of query: 289
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 196
Effective length of database: 4,105,140
Effective search space: 804607440
Effective search space used: 804607440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.3 bits)