RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2868
         (289 letters)



>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
          Length = 524

 Score = 30.3 bits (67), Expect = 0.29
 Identities = 19/177 (10%), Positives = 38/177 (21%), Gaps = 12/177 (6%)

Query: 2   LQNHLFTHSYVTKPPVHTFI-CYKTTCSHIHMLQNHLFTHSYVTKPPVHTFI-------- 52
             + L  ++         F   Y+                 +  +P + T I        
Sbjct: 106 NMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPR 165

Query: 53  --CYKTTCSH-IHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTLHMLQNHL 109
                        +++   +  S                     +    +     L    
Sbjct: 166 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 225

Query: 110 FTLHMLQNHLFTHSYVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVT 166
             LH ++ +L     +       S     P      T PP  ++  T       H T
Sbjct: 226 CLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPT 282


>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
           (Prunus dulcis) [TaxId: 3755]}
          Length = 351

 Score = 28.3 bits (62), Expect = 1.0
 Identities = 4/34 (11%), Positives = 11/34 (32%)

Query: 95  LQNHLFTLHMLQNHLFTLHMLQNHLFTHSYVTKP 128
           L   +         +  L ++    F ++  + P
Sbjct: 295 LVGKVLDGDFRVTGINALRVVDGSTFPYTPASHP 328


>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 107

 Score = 25.6 bits (55), Expect = 3.7
 Identities = 4/64 (6%), Positives = 14/64 (21%)

Query: 47  PVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTLHMLQ 106
            V   +    TC +  +        +          I      +  +      + +  + 
Sbjct: 16  DVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVP 75

Query: 107 NHLF 110
             + 
Sbjct: 76  KIVI 79


>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis
           protein SpsE, N-terminal domain {Bacillus subtilis
           [TaxId: 1423]}
          Length = 295

 Score = 26.1 bits (56), Expect = 5.5
 Identities = 10/131 (7%), Positives = 21/131 (16%), Gaps = 3/131 (2%)

Query: 19  TFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPP 78
           T     +         +     SY            +     I        +  +     
Sbjct: 107 TVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTAGAEISDVHEAWRT 166

Query: 79  VHTFICYKTTCSHIHM---LQNHLFTLHMLQNHLFTLHMLQNHLFTHSYVTKPPVHTSHV 135
           +      +    H             L ++                HS         +  
Sbjct: 167 IRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSEHPTEAPCAAVR 226

Query: 136 TKPPVHTSHVT 146
               +   H T
Sbjct: 227 LGAKLIEKHFT 237


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.131    0.436 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,073,243
Number of extensions: 47628
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 28
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.0 bits)