BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2869
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|O Chain O, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|CC Chain c, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|QQ Chain q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|A Chain A, Mouse Constitutive 20s Proteasome
pdb|3UNE|O Chain O, Mouse Constitutive 20s Proteasome
pdb|3UNE|CC Chain c, Mouse Constitutive 20s Proteasome
pdb|3UNE|QQ Chain q, Mouse Constitutive 20s Proteasome
pdb|3UNF|A Chain A, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|O Chain O, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|A Chain A, Mouse 20s Immunoproteasome
pdb|3UNH|O Chain O, Mouse 20s Immunoproteasome
Length = 234
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/219 (79%), Positives = 197/219 (89%), Gaps = 1/219 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGM 59
PSGKLVQIEYALAAV GAPSVGIKA+NG+VLATEKKQK+IL+ E +HKVEPIT +IG+
Sbjct: 15 PSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGL 74
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
VYSGMGPDYR+LV +ARK+AQQY LVYQE IPT QLVQRVA++MQEYTQSGGVRPFGVSL
Sbjct: 75 VYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSL 134
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
LICGW+ RPYL+Q DPSGAYFAWKATAMG+NYVNGKTFLEKRY+EDLEL+DA+HTAILT
Sbjct: 135 LICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILT 194
Query: 180 LKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNI 218
LKE FEGQMT +NIE+GI +E GFRRL VRD+L+ I
Sbjct: 195 LKESFEGQMTEDNIEVGICNEAGFRRLTPTEVRDYLAAI 233
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 66/78 (84%), Positives = 71/78 (91%)
Query: 257 VATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWK 316
V E IPT QLVQRVA++MQEYTQSGGVRPFGVSLLICGW+ RPYL+Q DPSGAYFAWK
Sbjct: 100 VYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWK 159
Query: 317 ATAMGRNYVNGKTFLEKR 334
ATAMG+NYVNGKTFLEKR
Sbjct: 160 ATAMGKNYVNGKTFLEKR 177
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 233
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/219 (78%), Positives = 197/219 (89%), Gaps = 1/219 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGM 59
PSGKLVQIEYALAAV GAPSVGIKA+NG+VLATEKKQK+IL+ E +HKVEPIT +IG+
Sbjct: 14 PSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGL 73
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
VYSGMGPDYR+LV +ARK+AQQY LVYQE IPT QLVQRVA++MQEYTQSGGVRPFGVSL
Sbjct: 74 VYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSL 133
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
LICGW+ RPYL+Q DPSGAYFAWKATAMG+NYVNGKTFLEKRY+EDLEL+DA+HTAILT
Sbjct: 134 LICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILT 193
Query: 180 LKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNI 218
LKE FEGQMT +NIE+GI +E GFRRL V+D+L+ I
Sbjct: 194 LKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 232
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 66/78 (84%), Positives = 71/78 (91%)
Query: 257 VATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWK 316
V E IPT QLVQRVA++MQEYTQSGGVRPFGVSLLICGW+ RPYL+Q DPSGAYFAWK
Sbjct: 99 VYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWK 158
Query: 317 ATAMGRNYVNGKTFLEKR 334
ATAMG+NYVNGKTFLEKR
Sbjct: 159 ATAMGKNYVNGKTFLEKR 176
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|A Chain A, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|O Chain O, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|A Chain A, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|O Chain O, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|A Chain A, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|O Chain O, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|A Chain A, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|O Chain O, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|A Chain A, Proteasome Inhibition By Fellutamide B
pdb|3D29|O Chain O, Proteasome Inhibition By Fellutamide B
pdb|3E47|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|A Chain A, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|O Chain O, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3NZJ|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|A Chain A, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|O Chain O, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|A Chain A, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|O Chain O, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|A Chain A, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|O Chain O, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|A Chain A, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|O Chain O, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|A Chain A, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|O Chain O, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|A Chain A, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|O Chain O, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|B Chain B, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|B Chain B, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|A Chain A, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|O Chain O, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|A Chain A, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|O Chain O, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 250
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 151/205 (73%), Gaps = 4/205 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTIL-FEDCIHKVEPITDYIGM 59
PSGKL QI+YAL AV+ G S+GIKA+NG+V+ATEKK + L + + KV +T IG
Sbjct: 14 PSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGA 73
Query: 60 VYSGMGPDYRLLVKKARKIAQ-QYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
VYSGMGPDYR+LV K+RK+A YK +Y E PT+ LV VA IMQE TQSGGVRPFGVS
Sbjct: 74 VYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVS 133
Query: 119 LLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
LLI G D + LYQ DPSG+YF WKATA+G+ V KTFLEKR++++LEL+DA+H A+
Sbjct: 134 LLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIAL 193
Query: 178 LTLKEGFEGQMTAENIEIG-IADEN 201
LTLKE EG+ + IE+ I DEN
Sbjct: 194 LTLKESVEGEFNGDTIELAIIGDEN 218
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 263 PTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY-LYQCDPSGAYFAWKATAMG 321
PT+ LV VA IMQE TQSGGVRPFGVSLLI G D + LYQ DPSG+YF WKATA+G
Sbjct: 106 PTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIG 165
Query: 322 RNYVNGKTFLEKR 334
+ V KTFLEKR
Sbjct: 166 KGSVAAKTFLEKR 178
>pdb|1VSY|B Chain B, Proteasome Activator Complex
pdb|1VSY|P Chain P, Proteasome Activator Complex
pdb|3L5Q|G Chain G, Proteasome Activator Complex
pdb|3L5Q|S Chain S, Proteasome Activator Complex
Length = 231
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 117/199 (58%), Positives = 146/199 (73%), Gaps = 4/199 (2%)
Query: 7 QIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTIL-FEDCIHKVEPITDYIGMVYSGMG 65
QI+YAL AV+ G S+GIKA+NG+V+ATEKK + L + + KV +T IG VYSGMG
Sbjct: 1 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMG 60
Query: 66 PDYRLLVKKARKIAQ-QYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGW 124
PDYR+LV K+RK+A YK +Y E PT+ LV VA IMQE TQSGGVRPFGVSLLI G
Sbjct: 61 PDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGH 120
Query: 125 DNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEG 183
D + LYQ DPSG+YF WKATA+G+ V KTFLEKR++++LEL+DA+H A+LTLKE
Sbjct: 121 DEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKES 180
Query: 184 FEGQMTAENIEIG-IADEN 201
EG+ + IE+ I DEN
Sbjct: 181 VEGEFNGDTIELAIIGDEN 199
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 263 PTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY-LYQCDPSGAYFAWKATAMG 321
PT+ LV VA IMQE TQSGGVRPFGVSLLI G D + LYQ DPSG+YF WKATA+G
Sbjct: 87 PTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIG 146
Query: 322 RNYVNGKTFLEKR 334
+ V KTFLEKR
Sbjct: 147 KGSVAAKTFLEKR 159
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 128/211 (60%), Gaps = 8/211 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ GA ++GIK G++L +K+ + L E D I K+ I ++I
Sbjct: 8 PDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICA 67
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
SG+ D R+L+ +AR AQ +L Y E I ++L +++ Q+YTQ GGVRPFGVSL
Sbjct: 68 ATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSL 127
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATA--MGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
LI G D + P LY+ DPSGA +KATA MGRN V F EK Y +DL DDA+ +
Sbjct: 128 LIAGVD-EVPKLYETDPSGALLEYKATAIGMGRNAVT--EFFEKEYRDDLSFDDAMVLGL 184
Query: 178 LTLKEGFEGQMTAENIEIGI--ADENGFRRL 206
+ + E ++ ENIE+G D+ F+ +
Sbjct: 185 VAMGLSIESELVPENIEVGYVKVDDRTFKEV 215
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 50/76 (65%), Gaps = 5/76 (6%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
E I ++L +++ Q+YTQ GGVRPFGVSLLI G D + P LY+ DPSGA +KATA
Sbjct: 96 EPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVD-EVPKLYETDPSGALLEYKATA 154
Query: 320 --MGRNYVNGKTFLEK 333
MGRN V F EK
Sbjct: 155 IGMGRNAVT--EFFEK 168
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 125/209 (59%), Gaps = 4/209 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ GA ++GIK G++L +K+ + L E D I K+ I ++I
Sbjct: 17 PDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
SG+ D R+L+ +AR AQ +L Y I ++L +++ Q+YTQ GGVRPFGVSL
Sbjct: 77 ATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSL 136
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
LI G N+ P LY+ DPSGA +KATA+G + F EK Y +DL DDA+ ++
Sbjct: 137 LIAGV-NEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVA 195
Query: 180 LKEGFEGQMTAENIEIGI--ADENGFRRL 206
+ E ++ ENIE+G D+ F+ +
Sbjct: 196 MGLSIESELVPENIEVGYVKVDDRTFKEV 224
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 259 TENIP--TQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWK 316
T +IP ++L +++ Q+YTQ GGVRPFGVSLLI G N+ P LY+ DPSGA +K
Sbjct: 102 TYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGV-NEVPKLYETDPSGALLEYK 160
Query: 317 ATAMGRNYVNGKTFLEK 333
ATA+G + F EK
Sbjct: 161 ATAIGMGRMAVTEFFEK 177
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 1/186 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 21 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 80
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ GGVRP+GVSL
Sbjct: 81 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSL 140
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
+ G D P L+ CDP+G +KATA+G +FLE+ Y E+L +AV I
Sbjct: 141 IFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKA 200
Query: 180 LKEGFE 185
LK E
Sbjct: 201 LKSSLE 206
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
+ + LV+RVA MQ+YTQ GGVRP+GVSL+ G D P L+ CDP+G +KATA+G
Sbjct: 111 VNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIG 170
Query: 322 RNYVNGKTFLEKREKLRVP 340
+FLE+ K +P
Sbjct: 171 SGKDAVVSFLEREYKENLP 189
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 128/217 (58%), Gaps = 2/217 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 17 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ GGVRP+GVSL
Sbjct: 77 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSL 136
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
+ G D P L+ CDP+G +KATA+G +FLE+ Y E+L +AV I
Sbjct: 137 IFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKA 196
Query: 180 LKEGFEGQMTAENIEIG-IADENGFRRLDVATVRDHL 215
LK E + EI I N +R D V+ L
Sbjct: 197 LKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
+ + LV+RVA MQ+YTQ GGVRP+GVSL+ G D P L+ CDP+G +KATA+G
Sbjct: 107 VNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIG 166
Query: 322 RNYVNGKTFLEKREKLRVP 340
+FLE+ K +P
Sbjct: 167 SGKDAVVSFLEREYKENLP 185
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 1/186 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 21 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 80
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ GGVRP+GVSL
Sbjct: 81 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSL 140
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
+ G D P L+ CDP+G +KATA+G +FLE+ Y E+L +AV I
Sbjct: 141 IFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKA 200
Query: 180 LKEGFE 185
LK E
Sbjct: 201 LKSSLE 206
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
+ + LV+RVA MQ+YTQ GGVRP+GVSL+ G D P L+ CDP+G +KATA+G
Sbjct: 111 VNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIG 170
Query: 322 RNYVNGKTFLEKREKLRVP 340
+FLE+ K +P
Sbjct: 171 SGKDAVVSFLEREYKENLP 189
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 128/217 (58%), Gaps = 2/217 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 17 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ GGVRP+GVSL
Sbjct: 77 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSL 136
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
+ G D P L+ CDP+G +KATA+G +FLE+ Y E+L +AV I
Sbjct: 137 IFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKA 196
Query: 180 LKEGFEGQMTAENIEIG-IADENGFRRLDVATVRDHL 215
LK E + EI I N +R D V+ L
Sbjct: 197 LKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
+ + LV+RVA MQ+YTQ GGVRP+GVSL+ G D P L+ CDP+G +KATA+G
Sbjct: 107 VNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIG 166
Query: 322 RNYVNGKTFLEKREKLRVP 340
+FLE+ K +P
Sbjct: 167 SGKDAVVSFLEREYKENLP 185
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 128/217 (58%), Gaps = 2/217 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 11 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 70
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ GGVRP+GVSL
Sbjct: 71 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSL 130
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
+ G D P L+ CDP+G +KATA+G +FLE+ Y E+L +AV I
Sbjct: 131 IFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKA 190
Query: 180 LKEGFEGQMTAENIEIG-IADENGFRRLDVATVRDHL 215
LK E + EI I N +R D V+ L
Sbjct: 191 LKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 227
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
+ + LV+RVA MQ+YTQ GGVRP+GVSL+ G D P L+ CDP+G +KATA+G
Sbjct: 101 VNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIG 160
Query: 322 RNYVNGKTFLEKREKLRVP 340
+FLE+ K +P
Sbjct: 161 SGKDAVVSFLEREYKENLP 179
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 128/217 (58%), Gaps = 2/217 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 17 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ GGVRP+GVSL
Sbjct: 77 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSL 136
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
+ G D P L+ CDP+G +KATA+G +FLE+ Y E+L +AV I
Sbjct: 137 IFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKA 196
Query: 180 LKEGFEGQMTAENIEIG-IADENGFRRLDVATVRDHL 215
LK E + EI I N +R D V+ L
Sbjct: 197 LKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
+ + LV+RVA MQ+YTQ GGVRP+GVSL+ G D P L+ CDP+G +KATA+G
Sbjct: 107 VNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIG 166
Query: 322 RNYVNGKTFLEKREKLRVP 340
+FLE+ K +P
Sbjct: 167 SGKDAVVSFLEREYKENLP 185
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 123/215 (57%), Gaps = 15/215 (6%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED--CIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 15 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 74
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ GG+RPFGVS
Sbjct: 75 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVS 134
Query: 119 LLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
+ G+D++ Y LY +PSG Y WKA ++G N +T L+ Y +D+++DDA+ A+
Sbjct: 135 FIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELAL 194
Query: 178 LTLKEGFEGQMTAENIEIGIADENGFRRLDVATVR 212
TL + + + RL+ AT+R
Sbjct: 195 KTLSKTTDSSALT------------YDRLEFATIR 217
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 255 LDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY-LYQCDPSGAYF 313
L E+IP + LV+R++ I Q YTQ GG+RPFGVS + G+D++ Y LY +PSG Y
Sbjct: 99 LKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYT 158
Query: 314 AWKATAMGRNYVNGKTFLE 332
WKA ++G N +T L+
Sbjct: 159 GWKAISVGANTSAAQTLLQ 177
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 123/215 (57%), Gaps = 15/215 (6%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED--CIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 14 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ GG+RPFGVS
Sbjct: 74 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVS 133
Query: 119 LLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
+ G+D++ Y LY +PSG Y WKA ++G N +T L+ Y +D+++DDA+ A+
Sbjct: 134 FIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELAL 193
Query: 178 LTLKEGFEGQMTAENIEIGIADENGFRRLDVATVR 212
TL + + + RL+ AT+R
Sbjct: 194 KTLSKTTDSSALT------------YDRLEFATIR 216
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 255 LDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY-LYQCDPSGAYF 313
L E+IP + LV+R++ I Q YTQ GG+RPFGVS + G+D++ Y LY +PSG Y
Sbjct: 98 LKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYT 157
Query: 314 AWKATAMGRNYVNGKTFLE 332
WKA ++G N +T L+
Sbjct: 158 GWKAISVGANTSAAQTLLQ 176
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 123/215 (57%), Gaps = 15/215 (6%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED--CIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 5 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 64
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ GG+RPFGVS
Sbjct: 65 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVS 124
Query: 119 LLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
+ G+D++ Y LY +PSG Y WKA ++G N +T L+ Y +D+++DDA+ A+
Sbjct: 125 FIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELAL 184
Query: 178 LTLKEGFEGQMTAENIEIGIADENGFRRLDVATVR 212
TL + + + RL+ AT+R
Sbjct: 185 KTLSKTTDSSALT------------YDRLEFATIR 207
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 255 LDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY-LYQCDPSGAYF 313
L E+IP + LV+R++ I Q YTQ GG+RPFGVS + G+D++ Y LY +PSG Y
Sbjct: 89 LKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYT 148
Query: 314 AWKATAMGRNYVNGKTFLE 332
WKA ++G N +T L+
Sbjct: 149 GWKAISVGANTSAAQTLLQ 167
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 123/215 (57%), Gaps = 15/215 (6%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED--CIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 2 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 61
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ GG+RPFGVS
Sbjct: 62 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVS 121
Query: 119 LLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
+ G+D++ Y LY +PSG Y WKA ++G N +T L+ Y +D+++DDA+ A+
Sbjct: 122 FIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELAL 181
Query: 178 LTLKEGFEGQMTAENIEIGIADENGFRRLDVATVR 212
TL + + + RL+ AT+R
Sbjct: 182 KTLSKTTDSSALT------------YDRLEFATIR 204
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 255 LDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY-LYQCDPSGAYF 313
L E+IP + LV+R++ I Q YTQ GG+RPFGVS + G+D++ Y LY +PSG Y
Sbjct: 86 LKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYT 145
Query: 314 AWKATAMGRNYVNGKTFLE 332
WKA ++G N +T L+
Sbjct: 146 GWKAISVGANTSAAQTLLQ 164
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 123/215 (57%), Gaps = 15/215 (6%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED--CIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 15 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 74
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ GG+RPFGVS
Sbjct: 75 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVS 134
Query: 119 LLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
+ G+D++ Y LY +PSG Y WKA ++G N +T L+ Y +D+++DDA+ A+
Sbjct: 135 FIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELAL 194
Query: 178 LTLKEGFEGQMTAENIEIGIADENGFRRLDVATVR 212
TL + + + RL+ AT+R
Sbjct: 195 KTLSKTTDSSALT------------YDRLEFATIR 217
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 255 LDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY-LYQCDPSGAYF 313
L E+IP + LV+R++ I Q YTQ GG+RPFGVS + G+D++ Y LY +PSG Y
Sbjct: 99 LKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYT 158
Query: 314 AWKATAMGRNYVNGKTFLE 332
WKA ++G N +T L+
Sbjct: 159 GWKAISVGANTSAAQTLLQ 177
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 116/198 (58%), Gaps = 2/198 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV G ++GI +G+VLA +++ + L + I K+ I D++
Sbjct: 21 PEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAA 80
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
SG+ D R+L+ +AR AQ Y+L Y E I + L +++ I Q YTQ GGVRPFGVSL
Sbjct: 81 ATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSL 140
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
LI G D L++ DPSGA +KATA+G LEK Y +D+ LD+ + AI
Sbjct: 141 LIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITA 200
Query: 180 LKEGFEGQMTAENIEIGI 197
L + E + EN+++ I
Sbjct: 201 LTKANE-DIKPENVDVCI 217
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
E I + L +++ I Q YTQ GGVRPFGVSLLI G D L++ DPSGA +KATA
Sbjct: 109 EEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATA 168
Query: 320 MGRNYVNGKTFLEK 333
+G LEK
Sbjct: 169 IGSGRPVVMELLEK 182
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|C Chain C, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Q Chain Q, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|C Chain C, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Q Chain Q, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|D Chain D, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|D Chain D, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 254
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 116/202 (57%), Gaps = 5/202 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G + Q+EYAL AV+ G +VG+K N +VL E++ L + I KV I ++
Sbjct: 13 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVV 72
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +SG+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSGGVRPFGVS
Sbjct: 73 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVS 132
Query: 119 LLICGWD--NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTA 176
LI G+D + P LYQ +PSG Y +W A +GRN + FLEK Y
Sbjct: 133 TLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECV 192
Query: 177 ILTLKEGFE-GQMTAENIEIGI 197
LT++ E Q A+NIEI +
Sbjct: 193 KLTVRSLLEVVQTGAKNIEITV 214
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD--NKRPYLYQCDPSGAYFAWKATA 319
+ + L + VA + Q YTQSGGVRPFGVS LI G+D + P LYQ +PSG Y +W A
Sbjct: 104 VTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQT 163
Query: 320 MGRNYVNGKTFLEKREKLRVP 340
+GRN + FLEK + P
Sbjct: 164 IGRNSKTVREFLEKNYDRKEP 184
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|C Chain C, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Q Chain Q, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|C Chain C, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|X Chain X, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|C Chain C, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Q Chain Q, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|C Chain C, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Q Chain Q, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|C Chain C, Proteasome Inhibition By Fellutamide B
pdb|3D29|Q Chain Q, Proteasome Inhibition By Fellutamide B
pdb|3E47|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|C Chain C, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Q Chain Q, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|C Chain C, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Q Chain Q, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|C Chain C, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Q Chain Q, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|C Chain C, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Q Chain Q, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|C Chain C, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Q Chain Q, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|C Chain C, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Q Chain Q, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|C Chain C, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Q Chain Q, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|C Chain C, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Q Chain Q, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|C Chain C, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Q Chain Q, 20s Yeast Proteasome In Complex With Glidobactin
Length = 241
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 116/202 (57%), Gaps = 5/202 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G + Q+EYAL AV+ G +VG+K N +VL E++ L + I KV I ++
Sbjct: 11 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVV 70
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +SG+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSGGVRPFGVS
Sbjct: 71 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVS 130
Query: 119 LLICGWD--NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTA 176
LI G+D + P LYQ +PSG Y +W A +GRN + FLEK Y
Sbjct: 131 TLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECV 190
Query: 177 ILTLKEGFE-GQMTAENIEIGI 197
LT++ E Q A+NIEI +
Sbjct: 191 KLTVRSLLEVVQTGAKNIEITV 212
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD--NKRPYLYQCDPSGAYFAWKATA 319
+ + L + VA + Q YTQSGGVRPFGVS LI G+D + P LYQ +PSG Y +W A
Sbjct: 102 VTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQT 161
Query: 320 MGRNYVNGKTFLEKREKLRVP 340
+GRN + FLEK + P
Sbjct: 162 IGRNSKTVREFLEKNYDRKEP 182
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Q Chain Q, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 243
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 116/202 (57%), Gaps = 5/202 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G + Q+EYAL AV+ G +VG+K N +VL E++ L + I KV I ++
Sbjct: 13 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVV 72
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +SG+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSGGVRPFGVS
Sbjct: 73 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVS 132
Query: 119 LLICGWD--NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTA 176
LI G+D + P LYQ +PSG Y +W A +GRN + FLEK Y
Sbjct: 133 TLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECV 192
Query: 177 ILTLKEGFE-GQMTAENIEIGI 197
LT++ E Q A+NIEI +
Sbjct: 193 KLTVRSLLEVVQTGAKNIEITV 214
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD--NKRPYLYQCDPSGAYFAWKATA 319
+ + L + VA + Q YTQSGGVRPFGVS LI G+D + P LYQ +PSG Y +W A
Sbjct: 104 VTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQT 163
Query: 320 MGRNYVNGKTFLEKREKLRVP 340
+GRN + FLEK + P
Sbjct: 164 IGRNSKTVREFLEKNYDRKEP 184
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome
pdb|3UNE|Q Chain Q, Mouse Constitutive 20s Proteasome
pdb|3UNE|EE Chain e, Mouse Constitutive 20s Proteasome
pdb|3UNE|SS Chain s, Mouse Constitutive 20s Proteasome
pdb|3UNF|C Chain C, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Q Chain Q, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|C Chain C, Mouse 20s Immunoproteasome
pdb|3UNH|Q Chain Q, Mouse 20s Immunoproteasome
Length = 248
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 120/204 (58%), Gaps = 12/204 (5%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTIL-FEDCIHKVEPITDYIGM 59
P G L Q+EYA AV+ G+ +VG++ + +VL EKK L E + K+ + D + M
Sbjct: 12 PDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCM 71
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
++G+ D R+++ +AR Q ++L ++ + + + + +A++ Q YTQS G RPFG+S
Sbjct: 72 AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISA 131
Query: 120 LICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAIL 178
LI G+D + P LYQ DPSG Y AWKA A+GR + + FLEK Y+ DDA+ T L
Sbjct: 132 LIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT-----DDAIETDDL 186
Query: 179 TLKEGFEG-----QMTAENIEIGI 197
T+K + Q +NIE+ +
Sbjct: 187 TIKLVIKALLEVVQSGGKNIELAV 210
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKATAM 320
+ + + + +A++ Q YTQS G RPFG+S LI G+D + P LYQ DPSG Y AWKA A+
Sbjct: 102 VTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI 161
Query: 321 GRNYVNGKTFLEK 333
GR + + FLEK
Sbjct: 162 GRGAKSVREFLEK 174
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 120/204 (58%), Gaps = 12/204 (5%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTIL-FEDCIHKVEPITDYIGM 59
P G L Q+EYA AV+ G+ +VG++ + +VL EKK L E + K+ + D + M
Sbjct: 12 PDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCM 71
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
++G+ D R+++ +AR Q ++L ++ + + + + +A++ Q YTQS G RPFG+S
Sbjct: 72 AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISA 131
Query: 120 LICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAIL 178
LI G+D + P LYQ DPSG Y AWKA A+GR + + FLEK Y+ D+A+ T L
Sbjct: 132 LIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT-----DEAIETDDL 186
Query: 179 TLKEGFEG-----QMTAENIEIGI 197
T+K + Q +NIE+ +
Sbjct: 187 TIKLVIKALLEVVQSGGKNIELAV 210
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKATAM 320
+ + + + +A++ Q YTQS G RPFG+S LI G+D + P LYQ DPSG Y AWKA A+
Sbjct: 102 VTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI 161
Query: 321 GRNYVNGKTFLEK 333
GR + + FLEK
Sbjct: 162 GRGAKSVREFLEK 174
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 120/208 (57%), Gaps = 6/208 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G+L Q+EYA+ A+ +GI A++G++LA E++ L ++ K+ + + +
Sbjct: 14 PEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+G+ D +L + R IAQ+Y L YQE IP +QLV + I Q YTQ GG RPFGVS
Sbjct: 74 CSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVS 133
Query: 119 LLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE-DLELDDAVHTA 176
LL GWD + LYQ DPSG Y WKAT +G N + L++ Y E ++ L A+ A
Sbjct: 134 LLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALA 193
Query: 177 ILTLKEGFE-GQMTAENIEIG-IADENG 202
I L + + +++AE +EI + ENG
Sbjct: 194 IKVLNKTMDVSKLSAEKVEIATLTRENG 221
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY-LYQCDPSGAYFAWKAT 318
E IP +QLV + I Q YTQ GG RPFGVSLL GWD + LYQ DPSG Y WKAT
Sbjct: 103 EPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKAT 162
Query: 319 AMGRNYVNGKTFLEKREK 336
+G N + L++ K
Sbjct: 163 CIGNNSAAAVSMLKQDYK 180
>pdb|1VSY|D Chain D, Proteasome Activator Complex
pdb|1VSY|R Chain R, Proteasome Activator Complex
pdb|3L5Q|I Chain I, Proteasome Activator Complex
pdb|3L5Q|U Chain U, Proteasome Activator Complex
Length = 227
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 114/198 (57%), Gaps = 5/198 (2%)
Query: 5 LVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIGMVYS 62
+ Q+EYAL AV+ G +VG+K N +VL E++ L + I KV I ++ + +S
Sbjct: 1 IFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFS 60
Query: 63 GMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLIC 122
G+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSGGVRPFGVS LI
Sbjct: 61 GLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIA 120
Query: 123 GWD--NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTL 180
G+D + P LYQ +PSG Y +W A +GRN + FLEK Y LT+
Sbjct: 121 GFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTV 180
Query: 181 KEGFE-GQMTAENIEIGI 197
+ E Q A+NIEI +
Sbjct: 181 RSLLEVVQTGAKNIEITV 198
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 267 LVQRVAAIMQEYTQSGGVRPFGVSLLICGWD--NKRPYLYQCDPSGAYFAWKATAMGRNY 324
L + VA + Q YTQSGGVRPFGVS LI G+D + P LYQ +PSG Y +W A +GRN
Sbjct: 93 LTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNS 152
Query: 325 VNGKTFLEK 333
+ FLEK
Sbjct: 153 KTVREFLEK 161
>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Q Chain Q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|EE Chain e, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|SS Chain s, Mouse Constitutive 20s Proteasome In Complex With Pr-957
Length = 248
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 119/204 (58%), Gaps = 12/204 (5%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTIL-FEDCIHKVEPITDYIGM 59
P G L Q+EYA AV+ G+ +VG++ + +VL KK L E + K+ + D + M
Sbjct: 12 PDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVAKKSVAKLQDERTVRKICALDDNVCM 71
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
++G+ D R+++ +AR Q ++L ++ + + + + +A++ Q YTQS G RPFG+S
Sbjct: 72 AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISA 131
Query: 120 LICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAIL 178
LI G+D + P LYQ DPSG Y AWKA A+GR + + FLEK Y+ DDA+ T L
Sbjct: 132 LIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT-----DDAIETDDL 186
Query: 179 TLKEGFEG-----QMTAENIEIGI 197
T+K + Q +NIE+ +
Sbjct: 187 TIKLVIKALLEVVQSGGKNIELAV 210
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKATAM 320
+ + + + +A++ Q YTQS G RPFG+S LI G+D + P LYQ DPSG Y AWKA A+
Sbjct: 102 VTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI 161
Query: 321 GRNYVNGKTFLEK 333
GR + + FLEK
Sbjct: 162 GRGAKSVREFLEK 174
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 116/201 (57%), Gaps = 5/201 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G+L Q+EYA+ A+ +GI A++G++LA E++ L ++ K+ + + +
Sbjct: 14 PEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+G+ D +L + R IAQ+Y L YQE IP +QLV + I Q YTQ GG RPFGVS
Sbjct: 74 CSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVS 133
Query: 119 LLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE-DLELDDAVHTA 176
LL GWD + LYQ DPSG Y WKAT +G N + L++ Y E ++ L A+ A
Sbjct: 134 LLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALA 193
Query: 177 ILTLKEGFE-GQMTAENIEIG 196
+ L + + +++AE +EI
Sbjct: 194 VKVLNKTMDVSKLSAEKVEIA 214
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY-LYQCDPSGAYFAWKAT 318
E IP +QLV + I Q YTQ GG RPFGVSLL GWD + LYQ DPSG Y WKAT
Sbjct: 103 EPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKAT 162
Query: 319 AMGRNYVNGKTFLEKREK 336
+G N + L++ K
Sbjct: 163 CIGNNSAAAVSMLKQDYK 180
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|R Chain R, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|FF Chain f, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|TT Chain t, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|D Chain D, Mouse Constitutive 20s Proteasome
pdb|3UNE|R Chain R, Mouse Constitutive 20s Proteasome
pdb|3UNE|FF Chain f, Mouse Constitutive 20s Proteasome
pdb|3UNE|TT Chain t, Mouse Constitutive 20s Proteasome
pdb|3UNF|D Chain D, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|R Chain R, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|D Chain D, Mouse 20s Immunoproteasome
pdb|3UNH|R Chain R, Mouse 20s Immunoproteasome
Length = 241
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 6/202 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA+ A++ G+ ++GI+ S G+ LA EK+ + L E I K+ I +IG
Sbjct: 17 PEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG-----VRP 114
SG+ D + L+ KAR Q + Y E + + + Q V+ + ++ + RP
Sbjct: 77 AMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRP 136
Query: 115 FGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVH 174
FGV+LL G D K P L+ DPSG + A A+G ++ L++ Y + + L +A+
Sbjct: 137 FGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIK 196
Query: 175 TAILTLKEGFEGQMTAENIEIG 196
++++ LK+ E ++ A NIE+
Sbjct: 197 SSLIILKQVMEEKLNATNIELA 218
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 285 RPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK 333
RPFGV+LL G D K P L+ DPSG + A A+G ++ L++
Sbjct: 135 RPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQE 183
>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|U Chain U, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|II Chain i, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|WW Chain w, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|G Chain G, Mouse Constitutive 20s Proteasome
pdb|3UNE|U Chain U, Mouse Constitutive 20s Proteasome
pdb|3UNE|II Chain i, Mouse Constitutive 20s Proteasome
pdb|3UNE|WW Chain w, Mouse Constitutive 20s Proteasome
pdb|3UNF|G Chain G, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|U Chain U, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|G Chain G, Mouse 20s Immunoproteasome
pdb|3UNH|U Chain U, Mouse 20s Immunoproteasome
Length = 246
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 7/222 (3%)
Query: 1 PSGKLVQIEYALAAV-EAGAPSVGIKASNGIVLATEKK-QKTILFEDCIHKVEPITDYIG 58
P G+L Q+EYA A+ + G SV ++ + V+ T+KK +L + + IT+ IG
Sbjct: 18 PEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIG 77
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
V +GM D R V++AR A +K Y IP L +R+A I Q YTQ+ +RP G
Sbjct: 78 CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCC 137
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE--DLELDDAVHT 175
+++ G D ++ P +Y+CDP+G Y +KATA G +FLEK+ + D + V T
Sbjct: 138 MILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVET 197
Query: 176 AILTLKEGFEGQMTAENIEIGIAD-EN-GFRRLDVATVRDHL 215
AI L IE+G+ EN FR L A + HL
Sbjct: 198 AITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHL 239
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 261 NIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKATA 319
IP L +R+A I Q YTQ+ +RP G +++ G D ++ P +Y+CDP+G Y +KATA
Sbjct: 108 EIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATA 167
Query: 320 MGRNYVNGKTFLEKREK 336
G +FLEK+ K
Sbjct: 168 AGVKQTESTSFLEKKVK 184
>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|O Chain O, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 246
Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 7/222 (3%)
Query: 1 PSGKLVQIEYALAAV-EAGAPSVGIKASNGIVLATEKK-QKTILFEDCIHKVEPITDYIG 58
P G+L Q+EYA A+ + G SV ++ + V+ T+KK +L + + IT+ IG
Sbjct: 18 PEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIG 77
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
V +GM D R V++AR A +K Y IP L +R+A I Q YTQ+ +RP G
Sbjct: 78 CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCC 137
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE--DLELDDAVHT 175
+++ G D ++ P +Y+CDP+G Y +KATA G +FLEK+ + D + V T
Sbjct: 138 MILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVET 197
Query: 176 AILTLKEGFEGQMTAENIEIGIAD-EN-GFRRLDVATVRDHL 215
AI L IE+G+ EN FR L A + HL
Sbjct: 198 AITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHL 239
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKATAM 320
IP L +R+A I Q YTQ+ +RP G +++ G D ++ P +Y+CDP+G Y +KATA
Sbjct: 109 IPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAA 168
Query: 321 GRNYVNGKTFLEKREK 336
G +FLEK+ K
Sbjct: 169 GVKQTESTSFLEKKVK 184
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 111/202 (54%), Gaps = 6/202 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY + A++ G+ ++GI+ S G+ LA EK+ + L E I K+ I +IG
Sbjct: 17 PEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG-----VRP 114
SG+ D + L+ KAR Q + Y E + + + Q V+ + ++ + RP
Sbjct: 77 AMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRP 136
Query: 115 FGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVH 174
FGV+LL G D K P L+ DPSG + A A+G ++ L++ Y + + L +A+
Sbjct: 137 FGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIK 196
Query: 175 TAILTLKEGFEGQMTAENIEIG 196
++++ LK+ E ++ A NIE+
Sbjct: 197 SSLIILKQVMEEKLNATNIELA 218
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 285 RPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK 333
RPFGV+LL G D K P L+ DPSG + A A+G ++ L++
Sbjct: 135 RPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQE 183
>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|S Chain S, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|GG Chain g, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|UU Chain u, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|E Chain E, Mouse Constitutive 20s Proteasome
pdb|3UNE|S Chain S, Mouse Constitutive 20s Proteasome
pdb|3UNE|GG Chain g, Mouse Constitutive 20s Proteasome
pdb|3UNE|UU Chain u, Mouse Constitutive 20s Proteasome
pdb|3UNF|E Chain E, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|S Chain S, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|E Chain E, Mouse 20s Immunoproteasome
pdb|3UNH|S Chain S, Mouse 20s Immunoproteasome
Length = 263
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 13/230 (5%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIH--KVEPITDYIG 58
P G++ QIEYA+ AV+ G+ +VG+K+ VL K+ ++ L H K+ + ++IG
Sbjct: 15 PQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +G+ D RLL R+ + V+ +P +LV + + Q TQ G RP+GV
Sbjct: 72 ISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVG 131
Query: 119 LLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLE--LDDAVHTA 176
LLI G+D+ P+++Q PS YF +A ++G + +T+LE+ SE +E LD+ V
Sbjct: 132 LLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHG 191
Query: 177 ILTLKEGF--EGQMTAENIEIGIADENG----FRRLDVATVRDHLSNIPQ 220
+ L+E E +T +N+ IGI ++ + DV+ D L PQ
Sbjct: 192 LRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLEERPQ 241
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
+P +LV + + Q TQ G RP+GV LLI G+D+ P+++Q PS YF +A ++G
Sbjct: 103 LPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIG 162
Query: 322 RNYVNGKTFLEK 333
+ +T+LE+
Sbjct: 163 ARSQSARTYLER 174
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 102/181 (56%), Gaps = 6/181 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEK--KQKTILFEDCIHKVEPITDYIG 58
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK K ++ + + K++ + +IG
Sbjct: 17 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIG 75
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T VRPFGVS
Sbjct: 76 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVS 135
Query: 119 LLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK---RYSEDLELDDAVHT 175
+ G D +LY +PSG+Y+ +K A G+ + K LEK + E L +AV
Sbjct: 136 TIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQ 195
Query: 176 A 176
A
Sbjct: 196 A 196
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
IP R+ +Q +T VRPFGVS + G D +LY +PSG+Y+ +K A G
Sbjct: 107 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATG 166
Query: 322 RNYVNGKTFLEK 333
+ + K LEK
Sbjct: 167 KGRQSAKAELEK 178
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 102/181 (56%), Gaps = 6/181 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEK--KQKTILFEDCIHKVEPITDYIG 58
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK K ++ + + K++ + +IG
Sbjct: 16 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIG 74
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T VRPFGVS
Sbjct: 75 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVS 134
Query: 119 LLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK---RYSEDLELDDAVHT 175
+ G D +LY +PSG+Y+ +K A G+ + K LEK + E L +AV
Sbjct: 135 TIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQ 194
Query: 176 A 176
A
Sbjct: 195 A 195
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
IP R+ +Q +T VRPFGVS + G D +LY +PSG+Y+ +K A G
Sbjct: 106 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATG 165
Query: 322 RNYVNGKTFLEK 333
+ + K LEK
Sbjct: 166 KGRQSAKAELEK 177
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 102/181 (56%), Gaps = 6/181 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEK--KQKTILFEDCIHKVEPITDYIG 58
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK K ++ + + K++ + +IG
Sbjct: 17 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIG 75
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T VRPFGVS
Sbjct: 76 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVS 135
Query: 119 LLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK---RYSEDLELDDAVHT 175
+ G D +LY +PSG+Y+ +K A G+ + K LEK + E L +AV
Sbjct: 136 TIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQ 195
Query: 176 A 176
A
Sbjct: 196 A 196
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
IP R+ +Q +T VRPFGVS + G D +LY +PSG+Y+ +K A G
Sbjct: 107 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATG 166
Query: 322 RNYVNGKTFLEK 333
+ + K LEK
Sbjct: 167 KGRQSAKAELEK 178
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 102/181 (56%), Gaps = 6/181 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEK--KQKTILFEDCIHKVEPITDYIG 58
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK K ++ + + K++ + +IG
Sbjct: 11 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIG 69
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T VRPFGVS
Sbjct: 70 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVS 129
Query: 119 LLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK---RYSEDLELDDAVHT 175
+ G D +LY +PSG+Y+ +K A G+ + K LEK + E L +AV
Sbjct: 130 TIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQ 189
Query: 176 A 176
A
Sbjct: 190 A 190
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
IP R+ +Q +T VRPFGVS + G D +LY +PSG+Y+ +K A G
Sbjct: 101 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATG 160
Query: 322 RNYVNGKTFLEK 333
+ + K LEK
Sbjct: 161 KGRQSAKAELEK 172
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 102/181 (56%), Gaps = 6/181 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEK--KQKTILFEDCIHKVEPITDYIG 58
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK K ++ + + K++ + +IG
Sbjct: 13 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T VRPFGVS
Sbjct: 72 CVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVS 131
Query: 119 LLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK---RYSEDLELDDAVHT 175
+ G D +LY +PSG+Y+ +K A G+ + K LEK + E L +AV
Sbjct: 132 TIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQ 191
Query: 176 A 176
A
Sbjct: 192 A 192
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
IP R+ +Q +T VRPFGVS + G D +LY +PSG+Y+ +K A G
Sbjct: 103 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATG 162
Query: 322 RNYVNGKTFLEK 333
+ + K LEK
Sbjct: 163 KGRQSAKAELEK 174
>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|T Chain T, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 263
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 9/203 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIH--KVEPITDYIG 58
P G++ QIEYA+ AV+ G+ +VG+K+ VL K+ ++ L H K+ + ++IG
Sbjct: 15 PQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +G+ D RLL R+ + V+ +P +LV + + Q TQ G RP+GV
Sbjct: 72 ISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVG 131
Query: 119 LLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLE--LDDAVHTA 176
LLI G+D+ P+++Q PS YF +A ++G + +T+LE+ SE +E L++ V
Sbjct: 132 LLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHG 191
Query: 177 ILTLKEGF--EGQMTAENIEIGI 197
+ L+E E +T +N+ IGI
Sbjct: 192 LRALRETLPAEQDLTTKNVSIGI 214
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 262 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG 321
+P +LV + + Q TQ G RP+GV LLI G+D+ P+++Q PS YF +A ++G
Sbjct: 103 LPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIG 162
Query: 322 RNYVNGKTFLEK 333
+ +T+LE+
Sbjct: 163 ARSQSARTYLER 174
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|R Chain R, A Gated Channel Into The Proteasome Core Particle
Length = 241
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 6/210 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 17 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
SG+ D R +++ AR A + L Y E+I + L Q V + S RPFGV+L
Sbjct: 77 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLAAAAAMS---RPFGVAL 133
Query: 120 LICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAIL 178
LI G D Y L+ +PSG ++ + A A+G + L + L L +A +
Sbjct: 134 LIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK 193
Query: 179 TLKEGFEGQMTAENIEIG-IADENGFRRLD 207
LK+ E ++ N ++ I ++GF+ D
Sbjct: 194 ILKQVMEEKLDENNAQLSCITKQDGFKIYD 223
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY-LYQCDPSGAYFAWKAT 318
E+I + L Q V + S RPFGV+LLI G D Y L+ +PSG ++ + A
Sbjct: 105 EDINVESLTQSVCDLAAAAAMS---RPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAK 161
Query: 319 AMG 321
A+G
Sbjct: 162 AIG 164
>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|D Chain D, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|R Chain R, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|D Chain D, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|D Chain D, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|R Chain R, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|D Chain D, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|R Chain R, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|D Chain D, Proteasome Inhibition By Fellutamide B
pdb|3D29|R Chain R, Proteasome Inhibition By Fellutamide B
pdb|3E47|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|D Chain D, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|R Chain R, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|D Chain D, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|R Chain R, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|D Chain D, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|R Chain R, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|D Chain D, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|R Chain R, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|D Chain D, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|R Chain R, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|D Chain D, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|R Chain R, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|D Chain D, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|R Chain R, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|D Chain D, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|R Chain R, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|D Chain D, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|R Chain R, 20s Yeast Proteasome In Complex With Glidobactin
Length = 242
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 110/216 (50%), Gaps = 9/216 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 9 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 68
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG------VR 113
SG+ D R +++ AR A + L Y E+I + L Q V + + + R
Sbjct: 69 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSR 128
Query: 114 PFGVSLLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDA 172
PFGV+LLI G D Y L+ +PSG ++ + A A+G + L + L L +A
Sbjct: 129 PFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 188
Query: 173 VHTAILTLKEGFEGQMTAENIEIG-IADENGFRRLD 207
+ LK+ E ++ N ++ I ++GF+ D
Sbjct: 189 ELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYD 224
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGG------VRPFGVSLLICGWDNKRPY-LYQCDPSGAY 312
E+I + L Q V + + + RPFGV+LLI G D Y L+ +PSG +
Sbjct: 97 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF 156
Query: 313 FAWKATAMG 321
+ + A A+G
Sbjct: 157 YRYNAKAIG 165
>pdb|1VSY|E Chain E, Proteasome Activator Complex
pdb|1VSY|S Chain S, Proteasome Activator Complex
pdb|3L5Q|J Chain J, Proteasome Activator Complex
pdb|3L5Q|V Chain V, Proteasome Activator Complex
pdb|3MG6|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 250
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 110/216 (50%), Gaps = 9/216 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 17 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG------VR 113
SG+ D R +++ AR A + L Y E+I + L Q V + + + R
Sbjct: 77 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSR 136
Query: 114 PFGVSLLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDA 172
PFGV+LLI G D Y L+ +PSG ++ + A A+G + L + L L +A
Sbjct: 137 PFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 196
Query: 173 VHTAILTLKEGFEGQMTAENIEIG-IADENGFRRLD 207
+ LK+ E ++ N ++ I ++GF+ D
Sbjct: 197 ELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYD 232
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGG------VRPFGVSLLICGWDNKRPY-LYQCDPSGAY 312
E+I + L Q V + + + RPFGV+LLI G D Y L+ +PSG +
Sbjct: 105 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF 164
Query: 313 FAWKATAMG 321
+ + A A+G
Sbjct: 165 YRYNAKAIG 173
>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 261
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 110/216 (50%), Gaps = 9/216 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 18 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 77
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG------VR 113
SG+ D R +++ AR A + L Y E+I + L Q V + + + R
Sbjct: 78 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSR 137
Query: 114 PFGVSLLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDA 172
PFGV+LLI G D Y L+ +PSG ++ + A A+G + L + L L +A
Sbjct: 138 PFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 197
Query: 173 VHTAILTLKEGFEGQMTAENIEIG-IADENGFRRLD 207
+ LK+ E ++ N ++ I ++GF+ D
Sbjct: 198 ELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYD 233
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGG------VRPFGVSLLICGWDNKRPY-LYQCDPSGAY 312
E+I + L Q V + + + RPFGV+LLI G D Y L+ +PSG +
Sbjct: 106 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF 165
Query: 313 FAWKATAMG 321
+ + A A+G
Sbjct: 166 YRYNAKAIG 174
>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|D Chain D, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|R Chain R, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|D Chain D, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|R Chain R, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3OEU|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3UN4|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4B4T|E Chain E, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 260
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 110/216 (50%), Gaps = 9/216 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 17 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG------VR 113
SG+ D R +++ AR A + L Y E+I + L Q V + + + R
Sbjct: 77 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSR 136
Query: 114 PFGVSLLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDA 172
PFGV+LLI G D Y L+ +PSG ++ + A A+G + L + L L +A
Sbjct: 137 PFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 196
Query: 173 VHTAILTLKEGFEGQMTAENIEIG-IADENGFRRLD 207
+ LK+ E ++ N ++ I ++GF+ D
Sbjct: 197 ELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYD 232
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGG------VRPFGVSLLICGWDNKRPY-LYQCDPSGAY 312
E+I + L Q V + + + RPFGV+LLI G D Y L+ +PSG +
Sbjct: 105 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF 164
Query: 313 FAWKATAMG 321
+ + A A+G
Sbjct: 165 YRYNAKAIG 173
>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
pdb|2Z5C|F Chain F, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 262
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 110/216 (50%), Gaps = 9/216 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 19 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 78
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG------VR 113
SG+ D R +++ AR A + L Y E+I + L Q V + + + R
Sbjct: 79 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSR 138
Query: 114 PFGVSLLICGWDNKRPY-LYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDA 172
PFGV+LLI G D Y L+ +PSG ++ + A A+G + L + L L +A
Sbjct: 139 PFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 198
Query: 173 VHTAILTLKEGFEGQMTAENIEIG-IADENGFRRLD 207
+ LK+ E ++ N ++ I ++GF+ D
Sbjct: 199 ELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYD 234
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGG------VRPFGVSLLICGWDNKRPY-LYQCDPSGAY 312
E+I + L Q V + + + RPFGV+LLI G D Y L+ +PSG +
Sbjct: 107 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF 166
Query: 313 FAWKATAMG 321
+ + A A+G
Sbjct: 167 YRYNAKAIG 175
>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|T Chain T, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|HH Chain h, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|VV Chain v, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|F Chain F, Mouse Constitutive 20s Proteasome
pdb|3UNE|T Chain T, Mouse Constitutive 20s Proteasome
pdb|3UNE|HH Chain h, Mouse Constitutive 20s Proteasome
pdb|3UNE|VV Chain v, Mouse Constitutive 20s Proteasome
pdb|3UNF|F Chain F, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|T Chain T, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|F Chain F, Mouse 20s Immunoproteasome
pdb|3UNH|T Chain T, Mouse 20s Immunoproteasome
Length = 255
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHK-VEPITDYIGM 59
P G++ Q+EYA+ AVE + ++GI+ +G+V EK + L+E+ +K + + ++GM
Sbjct: 17 PDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGM 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
+G+ D R L AR+ A ++ + NIP + L RVA + YT VRPFG S
Sbjct: 77 AVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSF 136
Query: 120 LICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAV 173
++ + N LY DPSG + + A+G+ KT +EK +++ D V
Sbjct: 137 MLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVV 191
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 261 NIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKATA 319
NIP + L RVA + YT VRPFG S ++ + N LY DPSG + + A
Sbjct: 106 NIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCA 165
Query: 320 MGRNYVNGKTFLEK 333
+G+ KT +EK
Sbjct: 166 IGKARQAAKTEIEK 179
>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|U Chain U, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 254
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHK-VEPITDYIGM 59
P G++ Q+EYA+ AVE + ++GI+ +G+V EK + L+E+ +K + + ++GM
Sbjct: 16 PDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGM 75
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
+G+ D R L AR+ A ++ + NIP + L RVA + YT VRPFG S
Sbjct: 76 AVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSF 135
Query: 120 LICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAV 173
++ + N LY DPSG + + A+G+ KT +EK +++ D V
Sbjct: 136 MLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIV 190
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 261 NIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKATA 319
NIP + L RVA + YT VRPFG S ++ + N LY DPSG + + A
Sbjct: 105 NIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCA 164
Query: 320 MGRNYVNGKTFLEK 333
+G+ KT +EK
Sbjct: 165 IGKARQAAKTEIEK 178
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|S Chain S, A Gated Channel Into The Proteasome Core Particle
Length = 234
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 6/206 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 15 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 73
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLL 120
+G+ PD R+L R+ LV+ + ++ + Q+ TQS G RP+GV LL
Sbjct: 74 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSAGGRPYGVGLL 133
Query: 121 ICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLEL----DDAVHTA 176
I G+D +L + PSG TA+G KT+LE+ +++ D+ +
Sbjct: 134 IIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAG 193
Query: 177 ILTLKEGFEGQ-MTAENIEIGIADEN 201
+ + + + +T +N+ I I ++
Sbjct: 194 VEAISQSLRDESLTVDNLSIAIVGKD 219
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 276 QEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK 333
Q+ TQS G RP+GV LLI G+D +L + PSG TA+G KT+LE+
Sbjct: 117 QKNTQSAGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER 174
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
Length = 233
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 6/206 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 14 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 72
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLL 120
+G+ PD R+L R+ LV+ + ++ + Q+ TQS G RP+GV LL
Sbjct: 73 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSAGGRPYGVGLL 132
Query: 121 ICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLEL----DDAVHTA 176
I G+D +L + PSG TA+G KT+LE+ +++ D+ +
Sbjct: 133 IIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAG 192
Query: 177 ILTLKEGFEGQ-MTAENIEIGIADEN 201
+ + + + +T +N+ I I ++
Sbjct: 193 VEAISQSLRDESLTVDNLSIAIVGKD 218
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 276 QEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK 333
Q+ TQS G RP+GV LLI G+D +L + PSG TA+G KT+LE+
Sbjct: 116 QKNTQSAGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER 173
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 6/206 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 14 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 72
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLL 120
+G+ PD R+L R+ LV+ + ++ + Q+ TQS G RP+GV LL
Sbjct: 73 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLL 132
Query: 121 ICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLEL----DDAVHTA 176
I G+D +L + PSG TA+G KT+LE+ +++ D+ +
Sbjct: 133 IIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAG 192
Query: 177 ILTLKEGFEGQ-MTAENIEIGIADEN 201
+ + + + +T +N+ I I ++
Sbjct: 193 VEAISQSLRDESLTVDNLSIAIVGKD 218
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 276 QEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK 333
Q+ TQS G RP+GV LLI G+D +L + PSG TA+G KT+LE+
Sbjct: 116 QKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER 173
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 6/206 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 15 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 73
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLL 120
+G+ PD R+L R+ LV+ + ++ + Q+ TQS G RP+GV LL
Sbjct: 74 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLL 133
Query: 121 ICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLEL----DDAVHTA 176
I G+D +L + PSG TA+G KT+LE+ +++ D+ +
Sbjct: 134 IIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAG 193
Query: 177 ILTLKEGFEGQ-MTAENIEIGIADEN 201
+ + + + +T +N+ I I ++
Sbjct: 194 VEAISQSLRDESLTVDNLSIAIVGKD 219
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 276 QEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK 333
Q+ TQS G RP+GV LLI G+D +L + PSG TA+G KT+LE+
Sbjct: 117 QKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER 174
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 6/206 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 16 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 74
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLL 120
+G+ PD R+L R+ LV+ + ++ + Q+ TQS G RP+GV LL
Sbjct: 75 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLL 134
Query: 121 ICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLEL----DDAVHTA 176
I G+D +L + PSG TA+G KT+LE+ +++ D+ +
Sbjct: 135 IIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAG 194
Query: 177 ILTLKEGFEGQ-MTAENIEIGIADEN 201
+ + + + +T +N+ I I ++
Sbjct: 195 VEAISQSLRDESLTVDNLSIAIVGKD 220
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 276 QEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK 333
Q+ TQS G RP+GV LLI G+D +L + PSG TA+G KT+LE+
Sbjct: 118 QKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLER 175
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|U Chain U, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|G Chain G, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|U Chain U, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|G Chain G, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|U Chain U, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|A Chain A, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|A Chain A, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 252
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 PSGKLVQIEYALAAV-EAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A + S+ ++ + V+ ++KK L + + + I+ IG
Sbjct: 21 PEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIG 80
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
MV +G PD R +A+ A +++ Y ++P L +R+A + Q YTQ +RP GV
Sbjct: 81 MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVI 140
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE-------DLELD 170
L D + P +Y+ DP+G Y +KATA G T LE + + + +
Sbjct: 141 LTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWE 200
Query: 171 DAVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNIPQ 220
V AI + + + + ++E+G+A ++ F L + + L I +
Sbjct: 201 KVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAIAE 250
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 261 NIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKATA 319
++P L +R+A + Q YTQ +RP GV L D + P +Y+ DP+G Y +KATA
Sbjct: 111 DMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATA 170
Query: 320 MG 321
G
Sbjct: 171 TG 172
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|G Chain G, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|U Chain U, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|G Chain G, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|G Chain G, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|U Chain U, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|G Chain G, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|U Chain U, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|G Chain G, Proteasome Inhibition By Fellutamide B
pdb|3D29|U Chain U, Proteasome Inhibition By Fellutamide B
pdb|3E47|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|G Chain G, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|U Chain U, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|A Chain A, Proteasome Activator Complex
pdb|1VSY|O Chain O, Proteasome Activator Complex
pdb|3L5Q|A Chain A, Proteasome Activator Complex
pdb|3L5Q|C Chain C, Proteasome Activator Complex
pdb|3MG4|G Chain G, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|U Chain U, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|G Chain G, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|U Chain U, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|G Chain G, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|U Chain U, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|G Chain G, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|U Chain U, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|G Chain G, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|U Chain U, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|G Chain G, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|U Chain U, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|G Chain G, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|U Chain U, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|G Chain G, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|U Chain U, 20s Yeast Proteasome In Complex With Glidobactin
Length = 243
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 PSGKLVQIEYALAAV-EAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A + S+ ++ + V+ ++KK L + + + I+ IG
Sbjct: 12 PEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
MV +G PD R +A+ A +++ Y ++P L +R+A + Q YTQ +RP GV
Sbjct: 72 MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVI 131
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE-------DLELD 170
L D + P +Y+ DP+G Y +KATA G T LE + + + +
Sbjct: 132 LTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWE 191
Query: 171 DAVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNIPQ 220
V AI + + + + ++E+G+A ++ F L + + L I +
Sbjct: 192 KVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAIAE 241
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 261 NIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKATA 319
++P L +R+A + Q YTQ +RP GV L D + P +Y+ DP+G Y +KATA
Sbjct: 102 DMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATA 161
Query: 320 MG 321
G
Sbjct: 162 TG 163
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 17/170 (10%)
Query: 15 VEAGAPSVGIKASNGIVLATEKKQKTILFEDCI-----HKVEPITDYIGMVYSGMGPDYR 69
+E G +VGI + +++ATE++ + E+ I K+ I Y GM +G+ D +
Sbjct: 5 LETGTTTVGITLKDAVIMATERR---VTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61
Query: 70 LLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRP 129
+LV+ + + Y+L + N+P ++ VA ++ P+ V LL+ G D P
Sbjct: 62 VLVRYMKAELELYRLQRRVNMP----IEAVATLLSNMLNQVKYMPYMVQLLVGGIDTA-P 116
Query: 130 YLYQCDPSGAYF--AWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
+++ D +G + +T G +V G LE +YSE + +D+ V I
Sbjct: 117 HVFSIDAAGGSVEDIYASTGSGSPFVYG--VLESQYSEKMTVDEGVDLVI 164
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 17/170 (10%)
Query: 15 VEAGAPSVGIKASNGIVLATEKKQKTILFEDCI-----HKVEPITDYIGMVYSGMGPDYR 69
+E G +VGI + +++ATE++ + E+ I K+ I Y GM +G+ D +
Sbjct: 5 LETGTTTVGITLKDAVIMATERR---VTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61
Query: 70 LLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRP 129
+LV+ + + Y+L + N+P ++ VA ++ P+ V LL+ G D P
Sbjct: 62 VLVRYMKAELELYRLQRRVNMP----IEAVATLLSNMLNQVKYMPYMVQLLVGGIDTA-P 116
Query: 130 YLYQCDPSGAYF--AWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
+++ D +G + +T G +V G LE +YSE + +D+ V I
Sbjct: 117 HVFSIDAAGGSVEDIYASTGSGSPFVYG--VLESQYSEKMTVDEGVDLVI 164
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 17/164 (10%)
Query: 21 SVGIKASNGIVLATEKKQKTILFEDCI-----HKVEPITDYIGMVYSGMGPDYRLLVKKA 75
+VGI + +++ATE++ + E+ I K+ I Y GM +G+ D ++LV+
Sbjct: 3 TVGITLKDAVIMATERR---VTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYM 59
Query: 76 RKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCD 135
+ + Y+L + N+P ++ VA ++ P+ V LL+ G D P+++ D
Sbjct: 60 KAELELYRLQRRVNMP----IEAVATLLSNMLNQVKYMPYMVQLLVGGIDTA-PHVFSID 114
Query: 136 PSGAYF--AWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
+G + +T G +V G LE +YSE + +D+ V I
Sbjct: 115 AAGGSVEDIYASTGSGSPFVYG--VLESQYSEKMTVDEGVDLVI 156
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 21 SVGIKASNGIVLATEKKQK--TILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+VG+ +G+V+ATEK+ + K+ I D + M +G D + L + +
Sbjct: 3 TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSG 138
A Y+ + +E PT V+ +A + S P+ V LLI G D++ +Y DP G
Sbjct: 63 ANLYE-IRRERKPT---VRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIG 118
Query: 139 AYFAWK-ATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
K A G + LE R++ ++ +D+AV A+
Sbjct: 119 GAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAV 158
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 9/189 (4%)
Query: 21 SVGIKASNGIVLATEKKQK--TILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+VG+ + ++LAT+K+ ++ + K+ I DYI M +G D + +V+
Sbjct: 4 TVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAE 63
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPS 137
A+ YK+ NIP A ++ S + PF ++I G+D + L+ DP
Sbjct: 64 AKLYKMRTGRNIPPLA----CATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPL 119
Query: 138 GAYFAWKA-TAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQMTAEN-IEI 195
G K TA G LE Y D+ +++ + A+ LK E + N I +
Sbjct: 120 GGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISL 179
Query: 196 GIADENGFR 204
+ ++G +
Sbjct: 180 AVITKDGVK 188
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 93/209 (44%), Gaps = 18/209 (8%)
Query: 21 SVGIKASNGIVLATEKKQKT--ILFEDCIHKVEPITDYIGMVYSGMGPDY----RLLVKK 74
++ K +G+++A + + + + KV I Y+ +G D RLL ++
Sbjct: 3 TLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ 62
Query: 75 ARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQC 134
R Y+L +E I + +A ++ +Y G + +ICGWD + P LY
Sbjct: 63 CR----IYELRNKERISVAAASKLLANMVYQYKGMG----LSMGTMICGWDKRGPGLYYV 114
Query: 135 DPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEG-FEGQMTAENI 193
D G + A ++G V +++ YS DL++++A A + + + + +
Sbjct: 115 DSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAV 174
Query: 194 EIGIADENGFRRL---DVATVRDHLSNIP 219
+ E+G+ R+ +VA + D S++
Sbjct: 175 NLYHVREDGWIRVSSDNVADLHDKYSSVS 203
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
E I + +A ++ +Y G + +ICGWD + P LY D G + A +
Sbjct: 72 ERISVAAASKLLANMVYQYKGMG----LSMGTMICGWDKRGPGLYYVDSEGNRISGTAFS 127
Query: 320 MGRNYVNGKTFLEK 333
+G V +++
Sbjct: 128 VGSGSVYAYGVMDR 141
>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Z Chain Z, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 204
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 15/200 (7%)
Query: 21 SVGIKASNGIVLATEKKQKT--ILFEDCIHKVEPITDYIGMVYSGMGPDY----RLLVKK 74
++ K +G+++A + + + + KV I Y+ +G D RLL ++
Sbjct: 3 TLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ 62
Query: 75 ARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQC 134
R Y+L +E I + +A ++ +Y G + +ICGWD + P LY
Sbjct: 63 CRI----YELRNKERISVAAASKLLANMVYQYKGMG----LSMGTMICGWDKRGPGLYYV 114
Query: 135 DPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEG-FEGQMTAENI 193
D G + ++G V +++ YS DLE++ A A + + + + +
Sbjct: 115 DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 174
Query: 194 EIGIADENGFRRLDVATVRD 213
+ E+G+ R+ V D
Sbjct: 175 NLYHVREDGWIRVSSDNVAD 194
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
E I + +A ++ +Y G + +ICGWD + P LY D G
Sbjct: 72 ERISVAAASKLLANMVYQYKGMG----LSMGTMICGWDKRGPGLYYVDSEG--------- 118
Query: 320 MGRNYVNGKTF 330
N ++G TF
Sbjct: 119 ---NRISGATF 126
>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Y Chain Y, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|K Chain K, Mouse 20s Immunoproteasome
pdb|3UNH|Y Chain Y, Mouse 20s Immunoproteasome
Length = 204
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 21 SVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIGMVYSGMGPDY----RLLVKK 74
++ K +G+++A + + + + +KV I Y+ SG D RLL K+
Sbjct: 3 TLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKE 62
Query: 75 ARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL--LICGWDNKRPYLY 132
R Y L E I + ++ +M +Y R G+S+ +ICGWD K P LY
Sbjct: 63 CR----LYYLRNGERISVSAASKLLSNMMLQY------RGMGLSMGSMICGWDKKGPGLY 112
Query: 133 QCDPSGAYFAWK--ATAMGRNYVNGKTFLEKRYSEDLELDDAVH-----TAILTLKEGFE 185
D +G + + +T G Y G ++ Y +DL ++A A T ++ +
Sbjct: 113 YVDDNGTRLSGQMFSTGSGNTYAYG--VMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYS 170
Query: 186 GQMTAENIEIGIADENGFRRLDVATVRDHL 215
G + + + E+G+ +++ + V D L
Sbjct: 171 GGV----VNMYHMKEDGWVKVESSDVSDLL 196
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL--LICGWDNKRPYLYQCDPSGAYFAWK- 316
E I + ++ +M +Y R G+S+ +ICGWD K P LY D +G + +
Sbjct: 72 ERISVSAASKLLSNMMLQY------RGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQM 125
Query: 317 -ATAMGRNYVNG 327
+T G Y G
Sbjct: 126 FSTGSGNTYAYG 137
>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|J Chain J, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|X Chain X, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|J Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|X Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|J Chain J, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|X Chain X, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|J Chain J, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|X Chain X, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|J Chain J, Proteasome Inhibition By Fellutamide B
pdb|3D29|X Chain X, Proteasome Inhibition By Fellutamide B
pdb|3E47|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|J Chain J, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|X Chain X, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|K Chain K, Proteasome Activator Complex
pdb|1VSY|Y Chain Y, Proteasome Activator Complex
pdb|3L5Q|O Chain O, Proteasome Activator Complex
pdb|3L5Q|1 Chain 1, Proteasome Activator Complex
pdb|3NZJ|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|J Chain J, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|X Chain X, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|J Chain J, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|X Chain X, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|J Chain J, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|X Chain X, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|J Chain J, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|X Chain X, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|J Chain J, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|X Chain X, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|J Chain J, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|X Chain X, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|4 Chain 4, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|K Chain K, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|J Chain J, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|X Chain X, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|J Chain J, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|X Chain X, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 198
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 11/193 (5%)
Query: 22 VGIKASNGIVLATEK--KQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
+GI+ + ++LA+ K + + +D K ++ + M ++G D + +
Sbjct: 5 LGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANI 64
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQS-GGVRPFGVSLLICGWDNK--RPYLYQCDP 136
Q Y + + Q + + + QE +S RP+ V++LI G+D K +P LYQ D
Sbjct: 65 QLYSIREDYELSPQAVS---SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDY 121
Query: 137 SGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQMTAE--NIE 194
G A G + + L+ Y D+ ++ + L ++E E +M + +
Sbjct: 122 LGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQE-LEKRMPMDFKGVI 180
Query: 195 IGIADENGFRRLD 207
+ I D++G R++D
Sbjct: 181 VKIVDKDGIRQVD 193
>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|V Chain V, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|H Chain H, Mouse 20s Immunoproteasome
pdb|3UNH|V Chain V, Mouse 20s Immunoproteasome
Length = 234
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Query: 23 GIKASNGIVLA--TEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQ 80
G+ +G++L T +++ + K+ I I +G+ D + + A +
Sbjct: 5 GLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKME 64
Query: 81 QYKLVYQENIPTQQLVQRVAAIMQE--YTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSG 138
+ L + + V V I+++ + G V G SL++ G D P LY+ P G
Sbjct: 65 LHAL----STGREPRVATVTRILRQTLFRYQGHV---GASLVVGGVDLNGPQLYEVHPHG 117
Query: 139 AYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDA 172
+Y TA+G LE R+ ++ L+ A
Sbjct: 118 SYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAA 151
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 288 GVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKR 334
G SL++ G D P LY+ P G+Y TA+G LE R
Sbjct: 95 GASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDR 141
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 8/189 (4%)
Query: 14 AVEAGAPSVGIKASNGIVLA--TEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLL 71
A G VG+K +NG+V+A T Q I+ + K+ I+ I +G D +
Sbjct: 25 ATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAV 84
Query: 72 VKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYL 131
+ + + L Y P ++V + + Q + G G L++ G D +L
Sbjct: 85 TQLIGSNIELHSL-YTSREP--RVVSALQMLKQHLFKYQG--HIGAYLIVAGVDPTGSHL 139
Query: 132 YQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQM-TA 190
+ G+ ++G + LE + +DL ++A+ A ++ G + +
Sbjct: 140 FSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSG 199
Query: 191 ENIEIGIAD 199
N+++ + +
Sbjct: 200 SNVDVCVME 208
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 8/181 (4%)
Query: 22 VGIKASNGIVLA--TEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
VG+K +NG+V+A T Q I+ + K+ I+ I +G D + +
Sbjct: 4 VGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNI 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 139
+ + L Y P ++V + + Q + G G L++ G D +L+ G+
Sbjct: 64 ELHSL-YTSREP--RVVSALQMLKQHLFKYQG--HIGAYLIVAGVDPTGSHLFSIHAHGS 118
Query: 140 YFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQM-TAENIEIGIA 198
++G + LE + +DL ++A+ A ++ G + + N+++ +
Sbjct: 119 TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVM 178
Query: 199 D 199
+
Sbjct: 179 E 179
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 8/181 (4%)
Query: 22 VGIKASNGIVLA--TEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
VG+K +NG+V+A T Q I+ + K+ I+ I +G D + +
Sbjct: 4 VGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNI 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 139
+ + L Y P ++V + + Q + G G L++ G D +L+ G+
Sbjct: 64 ELHSL-YTSREP--RVVSALQMLKQHLFKYQG--HIGAYLIVAGVDPTGSHLFSIHAHGS 118
Query: 140 YFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQM-TAENIEIGIA 198
++G + LE + +DL ++A+ A ++ G + + N+++ +
Sbjct: 119 TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVM 178
Query: 199 D 199
+
Sbjct: 179 E 179
>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|W Chain W, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 234
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Query: 115 FGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVH 174
G +L++ G D P+LY P G+ MG + E ++ D+E ++A +
Sbjct: 94 IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKN 153
Query: 175 TAILTLKEG-FEGQMTAENIEIGIADENGFRRLDVATV 211
+ G F + NI++ + +N L TV
Sbjct: 154 LVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTV 191
>pdb|2FHH|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|M Chain M, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|O Chain O, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|Q Chain Q, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|S Chain S, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|U Chain U, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|W Chain W, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|Y Chain Y, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
pdb|2FHH|1 Chain 1, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
Length = 251
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 83/210 (39%), Gaps = 40/210 (19%)
Query: 22 VGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQ 81
V + + G++ E +++ K+ + D +G +G ++ L + + A
Sbjct: 34 VALAYAGGVLFVAENPSRSL------QKISELYDRVGFAAAGKFNEFDNLRRGGIQFADT 87
Query: 82 YKLVY-QENIPTQQLV----QRVAAIMQEYTQSGGVRPFGVSLLICG----WDNKRPYLY 132
Y + ++ +QL Q + I E +P+ V L + + KRP LY
Sbjct: 88 RGYAYDRRDVTGRQLANVYAQTLGTIFTEQ-----AKPYEVELCVAEVAHYGETKRPELY 142
Query: 133 QCDPSGA-----YFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGF--- 184
+ G+ +F MG L++ Y+E+ L DA+ A+ L+ G
Sbjct: 143 RITYDGSIADEPHF----VVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADT 198
Query: 185 ----EGQMTAENIEIGIADEN----GFRRL 206
+ + ++E+ + D N FRR+
Sbjct: 199 SGGDQPTLGVASLEVAVLDANRPRRAFRRI 228
>pdb|2FHG|A Chain A, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|B Chain B, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|D Chain D, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|F Chain F, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|I Chain I, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|K Chain K, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|M Chain M, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|O Chain O, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|Q Chain Q, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|S Chain S, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|U Chain U, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|W Chain W, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|Y Chain Y, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
pdb|2FHG|1 Chain 1, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
Length = 250
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 83/210 (39%), Gaps = 40/210 (19%)
Query: 22 VGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQ 81
V + + G++ E +++ K+ + D +G +G ++ L + + A
Sbjct: 33 VALAYAGGVLFVAENPSRSL------QKISELYDRVGFAAAGKFNEFDNLRRGGIQFADT 86
Query: 82 YKLVY-QENIPTQQLV----QRVAAIMQEYTQSGGVRPFGVSLLICG----WDNKRPYLY 132
Y + ++ +QL Q + I E +P+ V L + + KRP LY
Sbjct: 87 RGYAYDRRDVTGRQLANVYAQTLGTIFTEQ-----AKPYEVELCVAEVAHYGETKRPELY 141
Query: 133 QCDPSGA-----YFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGF--- 184
+ G+ +F MG L++ Y+E+ L DA+ A+ L+ G
Sbjct: 142 RITYDGSIADEPHF----VVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADT 197
Query: 185 ----EGQMTAENIEIGIADEN----GFRRL 206
+ + ++E+ + D N FRR+
Sbjct: 198 SGGDQPTLGVASLEVAVLDANRPRRAFRRI 227
>pdb|3H6F|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|M Chain M, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|O Chain O, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|Q Chain Q, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|S Chain S, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|U Chain U, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|W Chain W, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|Y Chain Y, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6F|1 Chain 1, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
pdb|3H6I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|M Chain M, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|O Chain O, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|Q Chain Q, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|S Chain S, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|U Chain U, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|W Chain W, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|Y Chain Y, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3H6I|1 Chain 1, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
pdb|3MKA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|M Chain M, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|O Chain O, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|Q Chain Q, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|S Chain S, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|U Chain U, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|W Chain W, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|Y Chain Y, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|1 Chain 1, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MI0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|M Chain M, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|O Chain O, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|Q Chain Q, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|S Chain S, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|U Chain U, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|W Chain W, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|Y Chain Y, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3MI0|1 Chain 1, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
pdb|3KRD|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|M Chain M, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|O Chain O, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|Q Chain Q, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|S Chain S, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|U Chain U, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|W Chain W, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|Y Chain Y, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
pdb|3KRD|1 Chain 1, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
Length = 248
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 84/207 (40%), Gaps = 34/207 (16%)
Query: 22 VGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQ 81
V + + G++ E +++ K+ + D +G +G ++ L + + A
Sbjct: 31 VALAYAGGVLFVAENPSRSL------QKISELYDRVGFAAAGKFNEFDNLRRGGIQFADT 84
Query: 82 YKLVY-QENIPTQQLVQRVAAIMQE-YTQSGGVRPFGVSLLICG----WDNKRPYLYQCD 135
Y + ++ +QL A + +T+ +P+ V L + + KRP LY+
Sbjct: 85 RGYAYDRRDVTGRQLANVYAQTLGTIFTEQ--AKPYEVELCVAEVAHYGETKRPELYRIT 142
Query: 136 PSGA-----YFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGF------ 184
G+ +F MG L++ Y+E+ L DA+ A+ L+ G
Sbjct: 143 YDGSIADEPHF----VVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGG 198
Query: 185 -EGQMTAENIEIGIADEN----GFRRL 206
+ + ++E+ + D N FRR+
Sbjct: 199 DQPTLGVASLEVAVLDANRPRRAFRRI 225
>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|V Chain V, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|JJ Chain j, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|XX Chain x, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|H Chain H, Mouse Constitutive 20s Proteasome
pdb|3UNE|V Chain V, Mouse Constitutive 20s Proteasome
pdb|3UNE|JJ Chain j, Mouse Constitutive 20s Proteasome
pdb|3UNE|XX Chain x, Mouse Constitutive 20s Proteasome
Length = 234
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 115 FGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDA 172
G +L++ G D P+LY P G+ MG + E ++ D+E ++A
Sbjct: 94 IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 151
>pdb|3HF9|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|M Chain M, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|O Chain O, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|Q Chain Q, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|S Chain S, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|U Chain U, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|W Chain W, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|Y Chain Y, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|1 Chain 1, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|AA Chain a, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|BB Chain b, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|DD Chain d, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|FF Chain f, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|II Chain i, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|KK Chain k, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|MM Chain m, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|OO Chain o, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|QQ Chain q, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|SS Chain s, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|UU Chain u, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|WW Chain w, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|YY Chain y, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|3 Chain 3, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HFA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|M Chain M, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|O Chain O, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|Q Chain Q, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|S Chain S, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|U Chain U, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|W Chain W, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|Y Chain Y, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3HFA|1 Chain 1, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
pdb|3MFE|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|M Chain M, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|O Chain O, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|Q Chain Q, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|S Chain S, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|U Chain U, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|W Chain W, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|Y Chain Y, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
pdb|3MFE|1 Chain 1, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
Length = 240
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 83/210 (39%), Gaps = 40/210 (19%)
Query: 22 VGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQ 81
V + + G++ E +++ K+ + D +G +G ++ L + + A
Sbjct: 23 VALAYAGGVLFVAENPSRSL------QKISELYDRVGFAAAGKFNEFDNLRRGGIQFADT 76
Query: 82 YKLVY-QENIPTQQLV----QRVAAIMQEYTQSGGVRPFGVSLLICG----WDNKRPYLY 132
Y + ++ +QL Q + I E +P+ V L + + KRP LY
Sbjct: 77 RGYAYDRRDVTGRQLANVYAQTLGTIFTEQ-----AKPYEVELCVAEVAHYGETKRPELY 131
Query: 133 QCDPSGA-----YFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGF--- 184
+ G+ +F MG L++ Y+E+ L DA+ A+ L+ G
Sbjct: 132 RITYDGSIADEPHF----VVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADT 187
Query: 185 ----EGQMTAENIEIGIADEN----GFRRL 206
+ + ++E+ + D N FRR+
Sbjct: 188 SGGDQPTLGVASLEVAVLDANRPRRAFRRI 217
>pdb|4BBK|A Chain A, Structural And Functional Characterisation Of The
Kindlin-1 Pleckstrin Homology Domain
Length = 165
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 91 PTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGR 150
P ++L R I+ + SG R FG+ LLI D +CD Y W A +
Sbjct: 70 PIEKLNLRGCEIVPDVNVSG--RKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACILA 127
Query: 151 NYVNGKTFLEKRYSEDL 167
+ GKT + Y ++
Sbjct: 128 S--KGKTMADSSYQPEV 142
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 263 PTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAM 320
P ++L R I+ + SG R FG+ LLI D +CD Y W A +
Sbjct: 70 PIEKLNLRGCEIVPDVNVSG--RKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACI 125
>pdb|1PZ2|A Chain A, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1PZ2|B Chain B, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1QW8|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW8|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW9|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
pdb|1QW9|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
Length = 502
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 198 ADENGFRRLDVATVRDHLSNIPQSVHTAILTLKEGFEGQMTAENIEIGIA-DENGFRRLD 256
ADENGFR+ + V++ + I+ G ++ N E G+ E RRLD
Sbjct: 47 ADENGFRQDVIELVKE--------LQVPIIRYPGG--NFVSGYNWEDGVGPKEQRPRRLD 96
Query: 257 VATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCD-PSGAYFA 314
+A +++ T ++ + M G V+L G D R + C+ PSG+Y++
Sbjct: 97 LAWKSVETNEI--GLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYS 153
>pdb|1PZ3|A Chain A, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
pdb|1PZ3|B Chain B, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
Length = 502
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 198 ADENGFRRLDVATVRDHLSNIPQSVHTAILTLKEGFEGQMTAENIEIGIA-DENGFRRLD 256
ADENGFR+ + V++ + I+ G ++ N E G+ E RRLD
Sbjct: 47 ADENGFRQDVIELVKE--------LQVPIIRYPGG--NFVSGYNWEDGVGPKEQRPRRLD 96
Query: 257 VATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCD-PSGAYFA 314
+A +++ T ++ + M G V+L G D R + C+ PSG+Y++
Sbjct: 97 LAWKSVETNEI--GLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYS 153
>pdb|1Q5R|A Chain A, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|B Chain B, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|C Chain C, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|D Chain D, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|E Chain E, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|F Chain F, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|G Chain G, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
Length = 259
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 78/202 (38%), Gaps = 25/202 (12%)
Query: 23 GIKASNGIVLATEKKQKTILFED---CIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
GI +V+ T + + E+ +HKV + D +G G ++ L + A
Sbjct: 23 GIARGRSVVVLTFRDGVLFVAENPSTALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHA 82
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGV------RPFGVSLLICGWDN----KRP 129
Y T + ++ Y Q+ G +P+ V + + K P
Sbjct: 83 DMRGYSYDRRDVTGR------SLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAP 136
Query: 130 YLYQCDPSGAYFAWKA-TAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQM 188
LY+ G+ + MG T + + Y DL+L+ AV A+ L++G G+
Sbjct: 137 QLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEG 196
Query: 189 TAENI-----EIGIADENGFRR 205
N+ E+ + D++ RR
Sbjct: 197 EKRNVDVASLEVAVLDQSRPRR 218
>pdb|1Q5Q|A Chain A, The Rhodococcus 20s Proteasome
pdb|1Q5Q|B Chain B, The Rhodococcus 20s Proteasome
pdb|1Q5Q|C Chain C, The Rhodococcus 20s Proteasome
pdb|1Q5Q|D Chain D, The Rhodococcus 20s Proteasome
pdb|1Q5Q|E Chain E, The Rhodococcus 20s Proteasome
pdb|1Q5Q|F Chain F, The Rhodococcus 20s Proteasome
pdb|1Q5Q|G Chain G, The Rhodococcus 20s Proteasome
pdb|2H6J|A Chain A, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|B Chain B, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|C Chain C, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|D Chain D, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|E Chain E, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|F Chain F, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|G Chain G, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
Length = 259
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 78/202 (38%), Gaps = 25/202 (12%)
Query: 23 GIKASNGIVLATEKKQKTILFED---CIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
GI +V+ T + + E+ +HKV + D +G G ++ L + A
Sbjct: 23 GIARGRSVVVLTFRDGVLFVAENPSTALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHA 82
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGV------RPFGVSLLICGWDN----KRP 129
Y T + ++ Y Q+ G +P+ V + + K P
Sbjct: 83 DMRGYSYDRRDVTGR------SLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAP 136
Query: 130 YLYQCDPSGAYFAWKA-TAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQM 188
LY+ G+ + MG T + + Y DL+L+ AV A+ L++G G+
Sbjct: 137 QLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEG 196
Query: 189 TAENI-----EIGIADENGFRR 205
N+ E+ + D++ RR
Sbjct: 197 EKRNVDVASLEVAVLDQSRPRR 218
>pdb|4EHD|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 130 YLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLEL 169
+LY C + Y++W+ + G ++ + K+Y++ LE
Sbjct: 193 FLYACSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEF 232
>pdb|4EHK|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHK|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 130 YLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLEL 169
+LY C + Y++W+ + G ++ + K+Y++ LE
Sbjct: 193 FLYACSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEF 232
>pdb|4EHN|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 130 YLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLEL 169
+LY C + Y++W+ + G ++ + K+Y++ LE
Sbjct: 193 FLYACSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEF 232
>pdb|4EHF|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 130 YLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLEL 169
+LY C + Y++W+ + G ++ + K+Y++ LE
Sbjct: 193 FLYACSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEF 232
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 48 HKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQ------QLVQRVAA 101
H EPI + Y G RL V + +KIA +Y ++ NIPT QLV +
Sbjct: 37 HLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVL---NIPTTLIFVNGQLVDSLVG 93
Query: 102 IMQEYTQSGGVRPF 115
+ E T V +
Sbjct: 94 AVDEDTLESTVNKY 107
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 23 GIKASNGIVLATEKKQKTILFEDCIHKVEPITD 55
G K I A KK K ++ +DC V+PIT+
Sbjct: 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITE 515
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,702,224
Number of Sequences: 62578
Number of extensions: 448059
Number of successful extensions: 1310
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 163
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)