Query psy2869
Match_columns 352
No_of_seqs 285 out of 2328
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 18:58:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 3.8E-55 8.2E-60 396.4 28.6 215 1-215 10-226 (227)
2 KOG0176|consensus 100.0 4.1E-55 9E-60 366.9 21.1 218 1-218 17-241 (241)
3 PTZ00246 proteasome subunit al 100.0 4.9E-54 1.1E-58 395.2 28.8 222 1-222 14-245 (253)
4 PRK03996 proteasome subunit al 100.0 4E-53 8.6E-58 386.7 28.5 218 1-218 19-239 (241)
5 TIGR03633 arc_protsome_A prote 100.0 3.6E-52 7.9E-57 376.4 27.3 209 1-210 12-224 (224)
6 cd03751 proteasome_alpha_type_ 100.0 3.1E-52 6.8E-57 373.0 25.6 198 1-198 13-212 (212)
7 COG0638 PRE1 20S proteasome, a 100.0 2E-51 4.3E-56 372.8 27.5 217 1-219 12-233 (236)
8 cd03752 proteasome_alpha_type_ 100.0 2.5E-51 5.5E-56 368.1 26.0 198 1-198 12-213 (213)
9 cd03755 proteasome_alpha_type_ 100.0 4.9E-51 1.1E-55 364.6 26.0 196 1-198 10-207 (207)
10 cd03749 proteasome_alpha_type_ 100.0 1.3E-50 2.8E-55 362.8 26.7 198 1-199 10-211 (211)
11 cd03756 proteasome_alpha_arche 100.0 1.8E-50 3.8E-55 362.2 26.4 199 1-199 11-210 (211)
12 KOG0178|consensus 100.0 5.6E-51 1.2E-55 345.3 21.2 222 1-222 14-244 (249)
13 cd03754 proteasome_alpha_type_ 100.0 2.3E-50 5E-55 362.0 25.8 198 1-198 11-215 (215)
14 KOG0183|consensus 100.0 1E-50 2.2E-55 344.6 18.9 224 1-226 13-241 (249)
15 KOG0184|consensus 100.0 1.4E-50 3.1E-55 345.5 19.5 218 1-218 17-238 (254)
16 cd03753 proteasome_alpha_type_ 100.0 1.1E-49 2.4E-54 357.5 25.8 198 1-198 10-213 (213)
17 cd01911 proteasome_alpha prote 100.0 1.5E-49 3.4E-54 355.6 25.2 198 1-198 10-209 (209)
18 KOG0181|consensus 100.0 7.6E-50 1.6E-54 334.6 19.7 218 1-218 15-233 (233)
19 KOG0182|consensus 100.0 3.2E-46 7E-51 316.6 23.1 219 1-219 18-243 (246)
20 PTZ00488 Proteasome subunit be 100.0 2.1E-44 4.6E-49 328.5 24.5 204 14-221 35-241 (247)
21 TIGR03690 20S_bact_beta protea 100.0 3.7E-44 7.9E-49 322.7 24.7 204 17-221 1-217 (219)
22 TIGR03691 20S_bact_alpha prote 100.0 4.1E-44 8.9E-49 322.9 25.0 201 8-215 17-228 (228)
23 cd03761 proteasome_beta_type_5 100.0 8.9E-44 1.9E-48 313.2 24.5 184 19-206 1-187 (188)
24 cd03758 proteasome_beta_type_2 100.0 1.2E-43 2.6E-48 313.5 24.2 186 19-206 2-191 (193)
25 KOG0863|consensus 100.0 1.1E-43 2.3E-48 304.8 21.1 217 1-218 15-236 (264)
26 cd03759 proteasome_beta_type_3 100.0 2.2E-43 4.8E-48 312.4 23.4 184 17-204 2-190 (195)
27 cd03760 proteasome_beta_type_4 100.0 2.7E-43 5.8E-48 312.4 23.5 190 17-208 1-197 (197)
28 TIGR03634 arc_protsome_B prote 100.0 2.2E-42 4.7E-47 303.8 23.8 182 18-203 1-185 (185)
29 cd03757 proteasome_beta_type_1 100.0 1.7E-42 3.8E-47 310.4 22.9 187 15-205 5-204 (212)
30 cd03764 proteasome_beta_archea 100.0 4.3E-42 9.2E-47 302.6 24.4 185 19-207 1-188 (188)
31 cd03765 proteasome_beta_bacter 100.0 7.3E-42 1.6E-46 308.6 26.0 207 20-227 2-233 (236)
32 cd03763 proteasome_beta_type_7 100.0 9.1E-42 2E-46 300.7 23.9 185 19-208 1-188 (189)
33 cd03762 proteasome_beta_type_6 100.0 5.6E-41 1.2E-45 295.5 23.8 182 19-205 1-186 (188)
34 cd01912 proteasome_beta protea 100.0 3E-40 6.6E-45 291.0 23.7 184 19-206 1-188 (189)
35 PF00227 Proteasome: Proteasom 100.0 1.1E-39 2.3E-44 287.5 22.2 184 15-198 1-190 (190)
36 cd01906 proteasome_protease_Hs 100.0 7.5E-39 1.6E-43 280.3 24.1 178 19-198 1-182 (182)
37 KOG0177|consensus 100.0 3.5E-37 7.6E-42 257.8 17.9 187 20-208 3-193 (200)
38 KOG0174|consensus 100.0 1.5E-34 3.2E-39 242.6 16.2 197 14-215 15-217 (224)
39 KOG0175|consensus 100.0 2.5E-34 5.4E-39 250.8 17.3 200 15-218 68-270 (285)
40 KOG0173|consensus 100.0 1.1E-33 2.4E-38 246.3 16.8 187 13-204 32-221 (271)
41 KOG0179|consensus 100.0 4.7E-33 1E-37 236.2 18.4 186 15-204 26-226 (235)
42 KOG0185|consensus 100.0 1.6E-32 3.4E-37 236.9 14.2 197 14-212 37-241 (256)
43 KOG0181|consensus 100.0 1.4E-31 3E-36 224.8 10.7 129 214-349 64-192 (233)
44 PRK05456 ATP-dependent proteas 100.0 7.5E-30 1.6E-34 219.7 19.1 164 18-197 1-171 (172)
45 KOG0180|consensus 100.0 6.9E-30 1.5E-34 210.6 17.6 184 16-203 6-194 (204)
46 KOG0183|consensus 100.0 3.4E-31 7.5E-36 225.5 7.6 118 232-349 73-193 (249)
47 cd01913 protease_HslV Protease 100.0 1.3E-28 2.8E-33 210.5 18.7 162 19-197 1-170 (171)
48 cd01901 Ntn_hydrolase The Ntn 100.0 5E-28 1.1E-32 206.3 22.2 160 19-181 1-163 (164)
49 TIGR03692 ATP_dep_HslV ATP-dep 100.0 2.8E-28 6E-33 208.5 18.2 163 19-197 1-170 (171)
50 KOG0178|consensus 100.0 2E-29 4.4E-34 214.2 10.7 153 192-349 32-194 (249)
51 KOG0176|consensus 100.0 4E-29 8.6E-34 210.4 10.5 152 192-348 35-198 (241)
52 cd03751 proteasome_alpha_type_ 100.0 1.5E-28 3.2E-33 220.1 10.2 121 232-352 73-193 (212)
53 COG0638 PRE1 20S proteasome, a 99.9 4E-28 8.7E-33 220.3 8.8 119 232-352 74-192 (236)
54 cd03749 proteasome_alpha_type_ 99.9 1.1E-27 2.4E-32 214.5 10.2 121 232-352 68-190 (211)
55 cd03752 proteasome_alpha_type_ 99.9 1.2E-27 2.6E-32 214.7 9.5 131 215-352 63-194 (213)
56 cd03755 proteasome_alpha_type_ 99.9 1.3E-27 2.9E-32 213.5 9.3 121 232-352 70-191 (207)
57 KOG0863|consensus 99.9 1.4E-26 3E-31 199.5 13.5 128 205-337 50-178 (264)
58 cd03750 proteasome_alpha_type_ 99.9 3.5E-27 7.7E-32 213.6 8.8 120 232-351 70-189 (227)
59 cd03754 proteasome_alpha_type_ 99.9 4.7E-27 1E-31 211.0 9.3 121 232-352 72-197 (215)
60 KOG0182|consensus 99.9 1.8E-26 3.8E-31 196.5 8.0 140 205-352 59-199 (246)
61 PTZ00246 proteasome subunit al 99.9 3.8E-26 8.1E-31 210.1 9.1 131 215-352 65-196 (253)
62 KOG0184|consensus 99.9 7.8E-26 1.7E-30 193.9 9.9 129 206-341 58-186 (254)
63 cd03758 proteasome_beta_type_2 99.9 3.6E-26 7.7E-31 202.0 6.8 128 215-351 35-163 (193)
64 cd03756 proteasome_alpha_arche 99.9 8.3E-26 1.8E-30 202.5 8.5 121 232-352 71-191 (211)
65 PRK03996 proteasome subunit al 99.9 1.1E-25 2.3E-30 205.8 8.9 121 232-352 79-199 (241)
66 cd03761 proteasome_beta_type_5 99.9 5.4E-26 1.2E-30 200.1 6.6 126 215-351 34-159 (188)
67 cd03753 proteasome_alpha_type_ 99.9 1.7E-25 3.6E-30 200.8 8.6 121 232-352 70-195 (213)
68 TIGR03633 arc_protsome_A prote 99.9 4.5E-25 9.8E-30 199.5 8.9 121 232-352 72-192 (224)
69 cd03765 proteasome_beta_bacter 99.9 5.4E-25 1.2E-29 198.9 9.3 120 232-352 47-178 (236)
70 cd03760 proteasome_beta_type_4 99.9 5.1E-25 1.1E-29 195.3 7.2 128 215-351 36-167 (197)
71 TIGR03690 20S_bact_beta protea 99.9 1E-24 2.2E-29 196.4 7.3 129 216-352 37-168 (219)
72 TIGR03691 20S_bact_alpha prote 99.9 9.1E-25 2E-29 197.1 6.6 154 191-352 27-186 (228)
73 TIGR03634 arc_protsome_B prote 99.9 3.1E-24 6.7E-29 188.4 8.2 116 232-351 45-160 (185)
74 cd01911 proteasome_alpha prote 99.9 4.3E-24 9.3E-29 191.1 9.2 120 232-351 70-190 (209)
75 KOG0175|consensus 99.9 1.1E-24 2.3E-29 190.7 4.6 126 223-352 105-231 (285)
76 cd03764 proteasome_beta_archea 99.9 6.1E-24 1.3E-28 187.0 7.9 116 232-351 44-159 (188)
77 cd03759 proteasome_beta_type_3 99.9 4.5E-24 9.8E-29 188.9 7.1 127 215-352 37-165 (195)
78 cd03763 proteasome_beta_type_7 99.9 8.2E-24 1.8E-28 186.4 8.0 126 215-352 34-159 (189)
79 PTZ00488 Proteasome subunit be 99.9 1.2E-23 2.6E-28 192.1 7.5 150 189-352 37-199 (247)
80 cd03762 proteasome_beta_type_6 99.9 1.8E-23 3.9E-28 184.1 7.6 116 232-352 44-160 (188)
81 cd01906 proteasome_protease_Hs 99.9 8.8E-23 1.9E-27 178.5 9.5 118 232-351 44-162 (182)
82 PF00227 Proteasome: Proteasom 99.9 1.1E-22 2.3E-27 179.1 7.7 121 232-352 49-171 (190)
83 cd03757 proteasome_beta_type_1 99.9 6.9E-23 1.5E-27 183.6 6.3 126 215-351 42-177 (212)
84 cd01912 proteasome_beta protea 99.9 2E-22 4.3E-27 177.5 8.7 116 232-351 44-160 (189)
85 KOG0173|consensus 99.7 3.6E-18 7.8E-23 149.6 8.6 152 188-352 34-196 (271)
86 cd01901 Ntn_hydrolase The Ntn 99.7 9.1E-18 2E-22 142.8 10.0 118 231-351 43-161 (164)
87 KOG0179|consensus 99.6 9.4E-16 2E-20 131.0 9.0 103 233-341 74-179 (235)
88 COG3484 Predicted proteasome-t 99.5 1E-12 2.2E-17 112.1 13.8 183 20-203 3-203 (255)
89 PRK05456 ATP-dependent proteas 99.5 1.4E-13 3E-18 118.8 7.6 105 232-352 46-153 (172)
90 cd01913 protease_HslV Protease 99.4 7.9E-14 1.7E-18 119.5 5.4 104 232-352 45-152 (171)
91 KOG0174|consensus 99.4 4.4E-14 9.6E-19 119.4 2.7 113 234-351 65-178 (224)
92 TIGR03692 ATP_dep_HslV ATP-dep 99.4 1.2E-12 2.6E-17 112.2 6.5 104 232-352 45-152 (171)
93 COG5405 HslV ATP-dependent pro 99.4 1.6E-11 3.4E-16 101.4 12.6 166 17-198 3-175 (178)
94 KOG0177|consensus 99.3 1E-11 2.2E-16 105.0 7.3 124 216-348 36-160 (200)
95 KOG0180|consensus 99.1 8.1E-11 1.7E-15 98.0 6.5 119 229-351 49-169 (204)
96 PF10584 Proteasome_A_N: Prote 98.5 3E-08 6.5E-13 55.2 1.0 14 1-14 10-23 (23)
97 KOG0185|consensus 98.2 1.4E-06 3E-11 76.5 4.2 117 232-350 85-206 (256)
98 PF09894 DUF2121: Uncharacteri 96.3 0.34 7.4E-06 42.1 15.1 151 19-201 2-180 (194)
99 COG5405 HslV ATP-dependent pro 95.3 0.057 1.2E-06 45.4 6.2 108 229-351 46-155 (178)
100 COG4079 Uncharacterized protei 92.5 1.6 3.4E-05 39.4 10.1 152 19-201 2-181 (293)
101 COG3484 Predicted proteasome-t 91.6 0.99 2.2E-05 39.5 7.7 117 233-351 49-178 (255)
102 KOG3361|consensus 77.4 3.5 7.6E-05 33.6 3.8 44 132-175 71-114 (157)
103 PF11211 DUF2997: Protein of u 56.1 17 0.00038 24.3 3.2 32 304-335 3-34 (48)
104 PRK08452 flagellar protein Fla 46.4 76 0.0016 25.8 6.1 35 190-224 81-118 (124)
105 PRK07738 flagellar protein Fla 41.0 89 0.0019 25.1 5.7 35 190-224 74-111 (117)
106 PRK09732 hypothetical protein; 40.0 85 0.0018 25.9 5.6 35 165-202 5-39 (134)
107 COG3193 GlcG Uncharacterized p 36.3 1.1E+02 0.0023 25.5 5.6 36 164-202 5-40 (141)
108 COG1334 FlaG Uncharacterized f 35.0 90 0.002 25.2 4.8 53 172-224 50-114 (120)
109 PF07499 RuvA_C: RuvA, C-termi 34.4 20 0.00043 23.6 0.9 33 147-179 12-45 (47)
110 PF03928 DUF336: Domain of unk 32.0 71 0.0015 25.9 4.0 35 165-202 1-35 (132)
111 PRK08868 flagellar protein Fla 31.7 1.8E+02 0.004 24.3 6.3 51 169-219 73-131 (144)
112 PF03646 FlaG: FlaG protein; 31.4 70 0.0015 24.9 3.7 35 190-224 65-102 (107)
113 KOG2449|consensus 28.3 1.6E+02 0.0034 24.6 5.2 76 235-315 3-83 (157)
114 COG1576 Uncharacterized conser 27.5 2.4E+02 0.0052 23.9 6.4 91 206-304 15-114 (155)
115 cd06404 PB1_aPKC PB1 domain is 27.3 2.4E+02 0.0052 21.2 5.6 49 163-216 16-66 (83)
116 COG4537 ComGC Competence prote 26.2 99 0.0021 24.1 3.5 29 240-268 49-78 (107)
117 PF14191 YodL: YodL-like 25.1 78 0.0017 24.9 2.9 62 251-312 35-97 (103)
118 PF12385 Peptidase_C70: Papain 24.1 1.6E+02 0.0035 25.1 4.7 48 93-140 95-148 (166)
119 PF04539 Sigma70_r3: Sigma-70 23.2 1.1E+02 0.0025 21.8 3.4 34 244-277 3-36 (78)
120 PF05593 RHS_repeat: RHS Repea 22.7 86 0.0019 19.4 2.2 25 297-321 2-26 (38)
121 PF01242 PTPS: 6-pyruvoyl tetr 20.7 2.6E+02 0.0057 22.1 5.4 48 232-279 41-98 (123)
122 PF14769 CLAMP: Flagellar C1a 20.4 2.9E+02 0.0063 21.2 5.3 53 154-217 23-75 (101)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-55 Score=396.43 Aligned_cols=215 Identities=75% Similarity=1.171 Sum_probs=209.2
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||+|||||++|+++|+|+|||+++||||||+|++.++++. +++.+||++|++|++|+++|+.+|++.+.++++.++
T Consensus 10 p~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~ 89 (227)
T cd03750 10 PSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIA 89 (227)
T ss_pred CCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997777 788999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+.|++.++++++++.++++|++++|.|+++++.|||+|++||+|||++||+||.+||+|++.+++++|+|+|+..++++|
T Consensus 90 ~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~L 169 (227)
T cd03750 90 QQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFL 169 (227)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCC-CeEEcChhHHHHHH
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADEN-GFRRLDVATVRDHL 215 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~-g~~~l~~~ei~~~l 215 (352)
|++|+++||++||++++++||+.+.++++++.+++|++|+++ |++.++++||++++
T Consensus 170 e~~~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 170 EKRYNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred HhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 999999999999999999999999998899999999999985 79999999999876
No 2
>KOG0176|consensus
Probab=100.00 E-value=4.1e-55 Score=366.89 Aligned_cols=218 Identities=33% Similarity=0.601 Sum_probs=209.3
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||||||||++|++.|+|.|||+.++||||+++||.+++++ ++..+||++|++||+|++||+.+|++.+++++|.++
T Consensus 17 pEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~ 96 (241)
T KOG0176|consen 17 PEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVET 96 (241)
T ss_pred CCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccchHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCC-----CccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCch
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG-----VRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVN 154 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~-----~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~ 154 (352)
++|++.||++++++.+++.++++.-.|..... .|||||++|+||+|++||+||+.||+|++.+|++-|+|+|+.-
T Consensus 97 qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~~~~AKAIGSgsEg 176 (241)
T KOG0176|consen 97 QNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFIRYKAKAIGSGSEG 176 (241)
T ss_pred hhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceEEecceeccccchH
Confidence 99999999999999999999999977765422 4999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC-eEEcChhHHHHHHhhC
Q psy2869 155 GKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG-FRRLDVATVRDHLSNI 218 (352)
Q Consensus 155 ~~~~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g-~~~l~~~ei~~~l~~i 218 (352)
+.+.|++.|+++|+++||+.+++..|+.+++..++.+|++|++|++.| |++++++|+++++.++
T Consensus 177 a~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~~~t~EE~~~~i~~~ 241 (241)
T KOG0176|consen 177 AESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFHIYTPEEVEQVIKRL 241 (241)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceEecCHHHHHHHHhcC
Confidence 999999999999999999999999999999988999999999999885 9999999999988653
No 3
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.9e-54 Score=395.15 Aligned_cols=222 Identities=34% Similarity=0.599 Sum_probs=213.4
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (352)
|||||+|||||++|+++|+|+|||+++||||||+|+|.+++++ .++.+|||+|+++++|+++|..+|++.+.+.++.+
T Consensus 14 p~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~ 93 (253)
T PTZ00246 14 PEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLY 93 (253)
T ss_pred CCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 45689999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHH
Q psy2869 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKT 157 (352)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~ 157 (352)
++.|++.++.+++++.+++.++..+|.|++++++|||+|++||||||+ +||+||.+||+|++.+++++|+|+|+.++++
T Consensus 94 ~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~ 173 (253)
T PTZ00246 94 AQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQS 173 (253)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHH
Confidence 999999999999999999999999999999999999999999999996 5899999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCC------eEEcChhHHHHHHhhCccch
Q psy2869 158 FLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENG------FRRLDVATVRDHLSNIPQSV 222 (352)
Q Consensus 158 ~Le~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g------~~~l~~~ei~~~l~~i~~~~ 222 (352)
+||+.|+++|+++||++++++||..+.+++ .++++++|++|+++| +++++++||+++++++....
T Consensus 174 ~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~~~~~ 245 (253)
T PTZ00246 174 ILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKVTQEY 245 (253)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999 899999999998764 89999999999999986544
No 4
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4e-53 Score=386.67 Aligned_cols=218 Identities=42% Similarity=0.698 Sum_probs=211.3
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||+|||||++|+++|+|+|||+++||||||+|++.++++. .++.+||++|+++++|++||..+|++.++++++.++
T Consensus 19 p~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~ 98 (241)
T PRK03996 19 PDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEA 98 (241)
T ss_pred CCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999997777 788999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+.|+++++.+++++.+++++++.+|.|+++++.|||+|++||||||++||+||.+||+|++.+++++|+|.|+..++++|
T Consensus 99 ~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L 178 (241)
T PRK03996 99 QINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATAIGAGRDTVMEFL 178 (241)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEEEECCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC--eEEcChhHHHHHHhhC
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG--FRRLDVATVRDHLSNI 218 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g--~~~l~~~ei~~~l~~i 218 (352)
|+.|+++|+++||++++++||..+.+++.++++++|++++++| ++.++++|++++++++
T Consensus 179 e~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 179 EKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence 9999999999999999999999998866889999999999887 9999999999998875
No 5
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.6e-52 Score=376.41 Aligned_cols=209 Identities=44% Similarity=0.704 Sum_probs=202.7
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. .++.+||++|+++++|++||+.+|++.+.++++.++
T Consensus 12 p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 91 (224)
T TIGR03633 12 PDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEA 91 (224)
T ss_pred CCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999987766 788999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
..|+++++++++++.+++++++.+|.|+++++.|||+|++||||+|+++|+||.+||.|++.+++++++|+++..++++|
T Consensus 92 ~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L 171 (224)
T TIGR03633 92 QINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIGAGRQAVTEFL 171 (224)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEECCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCC--eEEcChhH
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENG--FRRLDVAT 210 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g--~~~l~~~e 210 (352)
++.|+++|+++||++++++||..+.+ | .+++.++|++|+++| ++.++++|
T Consensus 172 ~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 172 EKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 99999999999999999999999888 7 999999999999987 99988875
No 6
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-52 Score=373.01 Aligned_cols=198 Identities=34% Similarity=0.522 Sum_probs=192.7
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||+|||||++|+++|+|+|||+++||||||+|++.++.+. .++.+|||+|++|++|+++|+.+|++.+.++++.++
T Consensus 13 p~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~ 92 (212)
T cd03751 13 PDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEA 92 (212)
T ss_pred CCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999988777 778899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+.|++.++.+++++.++++|++++|.|++++++|||+|++||||||++||+||.+||+|++.+++++|+|+|+..++++|
T Consensus 93 ~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~L 172 (212)
T cd03751 93 ENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTEL 172 (212)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEEECCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEE
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIA 198 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii 198 (352)
|+.|+++||++||+++++++|+.+.+.+ ....++||+++
T Consensus 173 ek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 173 EKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999999977 88999999875
No 7
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-51 Score=372.81 Aligned_cols=217 Identities=42% Similarity=0.710 Sum_probs=209.4
Q ss_pred CCcceehhhhHHHHhcCC-CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAG-APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARK 77 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G-~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~ 77 (352)
||||++|+|||.+++++| +|+|||+++||||||+|||.+++++ .++.+|||+|+|||+|++||+.+|++.++++++.
T Consensus 12 p~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~ 91 (236)
T COG0638 12 PEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARA 91 (236)
T ss_pred CCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHH
Confidence 899999999999999986 9999999999999999999999988 6779999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHH
Q psy2869 78 IAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKT 157 (352)
Q Consensus 78 ~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~ 157 (352)
+++.|++.++++++++.+++++++++|.++++ .|||+|++||||+|+++|+||.+||+|++.+++++|+|+|++.+++
T Consensus 92 ~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~ 169 (236)
T COG0638 92 EAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSGSQFAYG 169 (236)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcCCCCeEEEECCCCceeecCEEEEcCCcHHHHH
Confidence 99999999999999999999999999999987 8999999999999998899999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeC-CCeEEcChhHHHHHHhhCc
Q psy2869 158 FLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADE-NGFRRLDVATVRDHLSNIP 219 (352)
Q Consensus 158 ~Le~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~-~g~~~l~~~ei~~~l~~i~ 219 (352)
+||+.|+++|++|||++++++||+.+.+|| .++++++|+++++ +|++.+.++++..++..+.
T Consensus 170 ~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~ 233 (236)
T COG0638 170 FLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLS 233 (236)
T ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHh
Confidence 999999999999999999999999999999 7999999999988 6899999999998887664
No 8
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-51 Score=368.06 Aligned_cols=198 Identities=43% Similarity=0.714 Sum_probs=193.0
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (352)
|||||+|||||+||+++|+|+|||+++||||||+|+|.+++++ +++.+||++|++|++|++||+.+|++.+.++++.+
T Consensus 12 p~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~ 91 (213)
T cd03752 12 PEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLI 91 (213)
T ss_pred CCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 45899999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHH
Q psy2869 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKT 157 (352)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~ 157 (352)
++.|+++++++++++.+++.|+..+|.|+++++.|||+|++||+|||+ .||+||.+||+|++.+++++|+|+++..+++
T Consensus 92 ~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~ 171 (213)
T cd03752 92 AQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQS 171 (213)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHH
Confidence 999999999999999999999999999999999999999999999996 5999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEE
Q psy2869 158 FLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIA 198 (352)
Q Consensus 158 ~Le~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii 198 (352)
+||+.|+++||++||++++++||..+.+|+ .++.++||+++
T Consensus 172 ~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 172 LLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999999999999999 99999999875
No 9
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-51 Score=364.61 Aligned_cols=196 Identities=40% Similarity=0.688 Sum_probs=189.9
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||+|||||++|+++|+|+|||+++||||||+|++.+.++. +++.+||++|++|++|++||+.+|++.+.++++.++
T Consensus 10 p~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~ 89 (207)
T cd03755 10 PDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLEC 89 (207)
T ss_pred CCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888777 678899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTF 158 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~ 158 (352)
+.|+++++++++++.+++++++++|.|+++++.|||+|++||||||++ +|+||.+||+|++.+++++++|+|+..++++
T Consensus 90 ~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~ 169 (207)
T cd03755 90 QSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREF 169 (207)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999975 9999999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEE
Q psy2869 159 LEKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIA 198 (352)
Q Consensus 159 Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii 198 (352)
||+.|+++||++||++++++||..+.+ .++.++||+++
T Consensus 170 Le~~~~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 170 LEKNYKEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred HHhhccCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 999999999999999999999999987 67889999985
No 10
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-50 Score=362.80 Aligned_cols=198 Identities=37% Similarity=0.663 Sum_probs=190.7
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcCccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQ 80 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~ 80 (352)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. ++.+|||+|+++++|++||+.+|++.+.++++.+++
T Consensus 10 p~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~-~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~ 88 (211)
T cd03749 10 PQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS-SYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECL 88 (211)
T ss_pred CCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC-CccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888754 455999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHH
Q psy2869 81 QYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLE 160 (352)
Q Consensus 81 ~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le 160 (352)
.|+++++++++++.+++++++++|.++++++.|||+|++||+|||++||+||.+||+|++.+++++|+|+|++.++++||
T Consensus 89 ~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le 168 (211)
T cd03749 89 NYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGARSQSARTYLE 168 (211)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred hhcC--CCCCHHHHHHHHHHHHHHhhccC--CCCCceEEEEEe
Q psy2869 161 KRYS--EDLELDDAVHTAILTLKEGFEGQ--MTAENIEIGIAD 199 (352)
Q Consensus 161 ~~~~--~~~s~~eai~l~~~~l~~~~~~d--~~~~~iei~ii~ 199 (352)
++|+ ++||++|++++++++|+.+++++ .++.++||++|+
T Consensus 169 ~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 169 RHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred HhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9999 59999999999999999999977 899999999983
No 11
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-50 Score=362.17 Aligned_cols=199 Identities=43% Similarity=0.702 Sum_probs=194.2
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||+|||||++|+++|+|+|||+++||||||+|++.++++. .++.+||++|+++++|++||+.+|++.+.+.++.++
T Consensus 11 p~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~ 90 (211)
T cd03756 11 PDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEA 90 (211)
T ss_pred CCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999987777 788999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+.|+++++++++++.+++++++.+|.++++++.|||+|++||||||+++|+||.+||+|++.+++++++|++++.++++|
T Consensus 91 ~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~L 170 (211)
T cd03756 91 QIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIGSGRQAVTEFL 170 (211)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEECCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEe
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIAD 199 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~ 199 (352)
|+.|+++|+++||++++++||..+.+++.++.+++|++|+
T Consensus 171 e~~~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 171 EKEYKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred HhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 9999999999999999999999999888999999999986
No 12
>KOG0178|consensus
Probab=100.00 E-value=5.6e-51 Score=345.28 Aligned_cols=222 Identities=38% Similarity=0.620 Sum_probs=213.4
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (352)
|||||+|||||++++.+.+|+||+.++|||||+++++.+++++ +...+||++|+|||+|+++|+.+|+..|++++|..
T Consensus 14 pEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~ 93 (249)
T KOG0178|consen 14 PEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARII 93 (249)
T ss_pred CCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999 67889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHH
Q psy2869 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKT 157 (352)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~ 157 (352)
+|.|.++||+++|.+.|++.++++.|.|||+++.||||||+|.+|||+. |.+||..||+|++..|++.++|.++..++.
T Consensus 94 AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s 173 (249)
T KOG0178|consen 94 AQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQS 173 (249)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHH
Confidence 9999999999999999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred HHHhhcCCC-CCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCC----eEEcChhHHHHHHhhCccch
Q psy2869 158 FLEKRYSED-LELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENG----FRRLDVATVRDHLSNIPQSV 222 (352)
Q Consensus 158 ~Le~~~~~~-~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g----~~~l~~~ei~~~l~~i~~~~ 222 (352)
+|+..|+++ ++++||+.++++.|....+.. ++.+.+|++.++++. ++.++++||.+++++....+
T Consensus 174 ~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~~~~~ 244 (249)
T KOG0178|consen 174 MLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKYHETQ 244 (249)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHhhhhh
Confidence 999999987 459999999999999999999 999999999997653 79999999999999885443
No 13
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-50 Score=362.02 Aligned_cols=198 Identities=37% Similarity=0.602 Sum_probs=190.8
Q ss_pred CCcceehhhhHHHHhcC-CCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEA-GAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (352)
Q Consensus 1 p~Grl~QveYa~~av~~-G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (352)
|||||+|||||+||+++ |+|+|||+++||||||+|+|.+.+++ .++.+|||+|+++++|++||+.+|++.+.+++|.+
T Consensus 11 p~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~ 90 (215)
T cd03754 11 PEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYE 90 (215)
T ss_pred CCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHH
Confidence 99999999999999985 78999999999999999999998887 66889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHH
Q psy2869 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKT 157 (352)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~ 157 (352)
++.|+++++++++++.+|+++++++|.|+++++.|||+|++||||||+ +||+||.+||+|++.+++++|+|+|++.+++
T Consensus 91 ~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~ 170 (215)
T cd03754 91 AAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATN 170 (215)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHH
Confidence 999999999999999999999999999999999999999999999996 5999999999999999999999999999999
Q ss_pred HHHhhcCCC--C--CHHHHHHHHHHHHHHhhccCCCCCceEEEEE
Q psy2869 158 FLEKRYSED--L--ELDDAVHTAILTLKEGFEGQMTAENIEIGIA 198 (352)
Q Consensus 158 ~Le~~~~~~--~--s~~eai~l~~~~l~~~~~~d~~~~~iei~ii 198 (352)
+||+.|+++ | |++||++++++||..+.+||.+++++||+||
T Consensus 171 ~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 171 FLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred HHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 999999995 7 9999999999999999999977999999985
No 14
>KOG0183|consensus
Probab=100.00 E-value=1e-50 Score=344.61 Aligned_cols=224 Identities=35% Similarity=0.601 Sum_probs=214.6
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||+|||||||++|+++|+|+||++++|+|||+.+++...++. .+...||..+++|++|+++|+.+|++.+++++|.+|
T Consensus 13 PDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvec 92 (249)
T KOG0183|consen 13 PDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVEC 92 (249)
T ss_pred CCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhh
Confidence 9999999999999999999999999999999999999999999 888999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTF 158 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~ 158 (352)
++|+++.+.|++++.++++|+.+.|.|||..+.||||++.+|+|+|++ .|+||.+||+|.+.+|++.|+|.+++.++.+
T Consensus 93 qShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEf 172 (249)
T KOG0183|consen 93 QSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREF 172 (249)
T ss_pred hhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHH
Confidence 999999999999999999999999999999999999999999999998 6999999999999999999999999999999
Q ss_pred HHhhcCCC--CCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC-eEEcChhHHHHHHhhCccchHHHH
Q psy2869 159 LEKRYSED--LELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG-FRRLDVATVRDHLSNIPQSVHTAI 226 (352)
Q Consensus 159 Le~~~~~~--~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g-~~~l~~~ei~~~l~~i~~~~~~~~ 226 (352)
||++|.+. .+..++++|++++|.++...+ +.++|++++++.+ +++++.++|++++..++.+...+.
T Consensus 173 lEK~y~e~~~~~~~~~ikL~ir~LleVvqs~--~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie~E~e~e~ 241 (249)
T KOG0183|consen 173 LEKNYKEEAIATEGETIKLAIRALLEVVQSG--GKNIEVAVMKRRKDLKMLESEEIDDIVKEIEQEEEAEA 241 (249)
T ss_pred HHHhcccccccccccHHHHHHHHHHHHhhcC--CCeeEEEEEecCCceeecCHHHHHHHHHHHHHHHHHHH
Confidence 99999886 789999999999999998866 8899999999887 999999999999999976644443
No 15
>KOG0184|consensus
Probab=100.00 E-value=1.4e-50 Score=345.47 Aligned_cols=218 Identities=31% Similarity=0.519 Sum_probs=208.4
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
||||+||||||+|||.+|+|||||||||||||++||..+++++ +..+.|||.|++||+|+++|+.+|.+.+.+++|.++
T Consensus 17 pdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea 96 (254)
T KOG0184|consen 17 PDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEA 96 (254)
T ss_pred CCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
.+|+.+|+.++|...++.+++++.|.||.++..||||++.++++||.+||+||++||+|..+.|+++|+|.|.+.+++.|
T Consensus 97 ~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtEl 176 (254)
T KOG0184|consen 97 ASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTEL 176 (254)
T ss_pred HHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeeeccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEE--eCCCeEEcChhHHHHHHhhC
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIA--DENGFRRLDVATVRDHLSNI 218 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii--~~~g~~~l~~~ei~~~l~~i 218 (352)
||.--.+|+.+|+++.+.+.++.+.+.. .....+|+.|+ ..+|.+...|+|+.+..++.
T Consensus 177 EKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~ 238 (254)
T KOG0184|consen 177 EKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKY 238 (254)
T ss_pred HhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHHH
Confidence 9998889999999999999999998888 78889999999 46788888888887755544
No 16
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-49 Score=357.52 Aligned_cols=198 Identities=34% Similarity=0.609 Sum_probs=190.4
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||+|||||++|+++|+|+|||+++||||||+|+|.++++. .++.+||++|++|++|+++|+.+|++.+.+.++.++
T Consensus 10 p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~ 89 (213)
T cd03753 10 PEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEA 89 (213)
T ss_pred CCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988777 778999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcC-----CCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCch
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSG-----GVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVN 154 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~-----~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~ 154 (352)
+.|+++++++++++.+++++++++|.|++.. ..|||+|++||||||++||+||.+||+|++.+++++++|++++.
T Consensus 90 ~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~~a~G~~~~~ 169 (213)
T cd03753 90 QNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDAKAIGSGSEG 169 (213)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccEEEECCCcHH
Confidence 9999999999999999999999999998753 46999999999999988999999999999999999999999999
Q ss_pred hHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEE
Q psy2869 155 GKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIA 198 (352)
Q Consensus 155 ~~~~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii 198 (352)
++++|+++|+++||++||++++++||+.+.++++++.++||++|
T Consensus 170 ~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 170 AQSSLQEKYHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999999999999998887799999999985
No 17
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.5e-49 Score=355.61 Aligned_cols=198 Identities=51% Similarity=0.832 Sum_probs=192.9
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||+|||||++++++|+|+||++++||||||+|++.+.++. .++.+||++|+++++|+++|..+|++.+.+.++..+
T Consensus 10 ~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~ 89 (209)
T cd01911 10 PEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEA 89 (209)
T ss_pred CCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999998877 788999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTF 158 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~ 158 (352)
..|+++++++++++.+|+++++++|.|+++++.|||+|++||+|||++ +|+||.+||.|++.+++++++|+|+..++++
T Consensus 90 ~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~ 169 (209)
T cd01911 90 QNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTF 169 (209)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999986 9999999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEE
Q psy2869 159 LEKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIA 198 (352)
Q Consensus 159 Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii 198 (352)
||+.|+++|+++||++++++||..+.+||.+++.++|+++
T Consensus 170 L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 170 LEKRYKKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 9999999999999999999999999999998889999875
No 18
>KOG0181|consensus
Probab=100.00 E-value=7.6e-50 Score=334.55 Aligned_cols=218 Identities=73% Similarity=1.126 Sum_probs=213.8
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|+|||-|+|||+.|+.+|.+.||++-.||||||++++..+.+. ....+|+++|.+||+|..||+.+|++.+++..|+.+
T Consensus 15 psGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiA 94 (233)
T KOG0181|consen 15 PSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIA 94 (233)
T ss_pred CCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHH
Confidence 8999999999999999999999999999999999999999999 888999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+.|...|+++||+..+++.++..+|+|||.++.||||+++++||||+++|.||.+||+|++..|+++|+|.+...++++|
T Consensus 95 e~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFl 174 (233)
T KOG0181|consen 95 EQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFL 174 (233)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhhhhhccCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEcChhHHHHHHhhC
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNI 218 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g~~~l~~~ei~~~l~~i 218 (352)
|++|+++|.+++++..++..|++..+...+.+++||+++..++|++++++||++++..+
T Consensus 175 EkR~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~~F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 175 EKRYNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENGFRRLTPAEIEDYLASL 233 (233)
T ss_pred HHHhccccccchHHHHHHHHHHHHhccccccCceEEEEecCCceeecCHHHHHHHHhcC
Confidence 99999999999999999999999999889999999999999999999999999998754
No 19
>KOG0182|consensus
Probab=100.00 E-value=3.2e-46 Score=316.63 Aligned_cols=219 Identities=34% Similarity=0.599 Sum_probs=212.6
Q ss_pred CCcceehhhhHHHHhcC-CCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEA-GAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (352)
Q Consensus 1 p~Grl~QveYa~~av~~-G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (352)
|||||+|||||.||+++ |-|.|+++++|++|+++.|+...+++ ++....+|+|.++|+|+++|..+|++..++++|.+
T Consensus 18 peGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~e 97 (246)
T KOG0182|consen 18 PEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYE 97 (246)
T ss_pred CCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCcchHHHHHHHHHH
Confidence 89999999999999999 77999999999999999999999999 88899999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHH
Q psy2869 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKT 157 (352)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~ 157 (352)
+.+++++||++||++.||++++++.|.|+|+..+||+||.+++.|+|++ ||.+|.+||.|.+..+++++.|.....+.+
T Consensus 98 Aa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~ts 177 (246)
T KOG0182|consen 98 AAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATS 177 (246)
T ss_pred HHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHH
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHhhcCCC--CCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC--eEEcChhHHHHHHhhCc
Q psy2869 158 FLEKRYSED--LELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG--FRRLDVATVRDHLSNIP 219 (352)
Q Consensus 158 ~Le~~~~~~--~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g--~~~l~~~ei~~~l~~i~ 219 (352)
+||++|+++ ++.+|++++++.||..++.-|+....+||.+++++. |+.|+.+||+++|..|.
T Consensus 178 fLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~~IA 243 (246)
T KOG0182|consen 178 FLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQAIA 243 (246)
T ss_pred HHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHHHhh
Confidence 999999997 789999999999999999999889999999998765 99999999999999884
No 20
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=2.1e-44 Score=328.54 Aligned_cols=204 Identities=18% Similarity=0.275 Sum_probs=191.6
Q ss_pred HhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCC
Q psy2869 14 AVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIP 91 (352)
Q Consensus 14 av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 91 (352)
.+++|+|+|||+++||||||+|+|.+.+.+ +++.+|||+|++|++++++|+.+|++.+.++++.+++.|+++++++++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 357899999999999999999999997655 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHH
Q psy2869 92 TQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDD 171 (352)
Q Consensus 92 ~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~e 171 (352)
++.+|++|++++|.++ ..|+.+++||||||++||+||++||+|++.+++++++|+|+.+++++||+.|+++||++|
T Consensus 115 v~~la~~ls~~l~~~R----~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eE 190 (247)
T PTZ00488 115 VAAASKILANIVWNYK----GMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEE 190 (247)
T ss_pred HHHHHHHHHHHHHhcC----CCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHH
Confidence 9999999999998864 224555589999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeEEcChhHHHHHHhhCccc
Q psy2869 172 AVHTAILTLKEGFEGQ-MTAENIEIGIADENGFRRLDVATVRDHLSNIPQS 221 (352)
Q Consensus 172 ai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~~ei~~~l~~i~~~ 221 (352)
|++++++||+.+.+|| .++++++|++|+++|++.++++||+++++++...
T Consensus 191 ai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l~~~~~~ 241 (247)
T PTZ00488 191 AQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLHQKYAAE 241 (247)
T ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHHHHHhhh
Confidence 9999999999999999 9999999999999999999999999999988643
No 21
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=3.7e-44 Score=322.71 Aligned_cols=204 Identities=21% Similarity=0.296 Sum_probs=189.8
Q ss_pred CCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q psy2869 17 AGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQ 94 (352)
Q Consensus 17 ~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 94 (352)
+|+|+|||+++||||||+|+|.+++.+ +++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 489999999999999999999998655 778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccceEEEeEEEEeC--CCCEEEEECCCC-cEEecceEEecCCCchhHHHHHhhcCCCCCHHH
Q psy2869 95 LVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN--KRPYLYQCDPSG-AYFAWKATAMGRNYVNGKTFLEKRYSEDLELDD 171 (352)
Q Consensus 95 la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~--~gp~Ly~iDp~G-~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~e 171 (352)
++++|++++|.++ ...+|||+|++||||||+ ++|+||.+||+| ++..++++|+|+|++.++++||+.|+++||++|
T Consensus 81 la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999877 445899999999999996 479999999999 577778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCCc-------eEEEEEeCCCeEEcChhHHHHHHhhCccc
Q psy2869 172 AVHTAILTLKEGFEGQ-MTAEN-------IEIGIADENGFRRLDVATVRDHLSNIPQS 221 (352)
Q Consensus 172 ai~l~~~~l~~~~~~d-~~~~~-------iei~ii~~~g~~~l~~~ei~~~l~~i~~~ 221 (352)
|++++++||..+.++| .+++. ++|++|+++|++.++++||+++++++.+.
T Consensus 160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~~~~~~~~ 217 (219)
T TIGR03690 160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEELARAIVES 217 (219)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHHHHHHHHhc
Confidence 9999999999999999 56653 39999999999999999999999887543
No 22
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=4.1e-44 Score=322.91 Aligned_cols=201 Identities=21% Similarity=0.349 Sum_probs=185.9
Q ss_pred hhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcCccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhC
Q psy2869 8 IEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQ 87 (352)
Q Consensus 8 veYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 87 (352)
-|||++|+++|+|+|||+++||||||+|++. ++.+|||+|+|||+|+++|+.+|++.+++.++.+++.|++.++
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~ 90 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYD 90 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4999999999999999999999999999972 4578999999999999999999999999999999999999998
Q ss_pred -CCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC--CCCEEEEECCCCcEEecc-eEEecCCCchhHHHHHhhc
Q psy2869 88 -ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN--KRPYLYQCDPSGAYFAWK-ATAMGRNYVNGKTFLEKRY 163 (352)
Q Consensus 88 -~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~--~gp~Ly~iDp~G~~~~~~-~~a~G~gs~~~~~~Le~~~ 163 (352)
.+++++.+|+++++.++.++ +++.|||+|++|++|||+ +||+||.+||+|++.+++ ++|+|+|++.++++||++|
T Consensus 91 ~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y 169 (228)
T TIGR03691 91 RRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESY 169 (228)
T ss_pred CCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhc
Confidence 78999999998888887766 567899999999999985 489999999999999976 8999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhh--ccC-CCCCceEEEEEeCCC----eEEcChhHHHHHH
Q psy2869 164 SEDLELDDAVHTAILTLKEGF--EGQ-MTAENIEIGIADENG----FRRLDVATVRDHL 215 (352)
Q Consensus 164 ~~~~s~~eai~l~~~~l~~~~--~~d-~~~~~iei~ii~~~g----~~~l~~~ei~~~l 215 (352)
+++||++||++++++||+.+. +++ +++.++||+++++++ |+.|+++||++++
T Consensus 170 ~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 170 RDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 999999999999999999995 466 899999999998653 9999999998763
No 23
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.9e-44 Score=313.16 Aligned_cols=184 Identities=18% Similarity=0.361 Sum_probs=177.7
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.+++.+ +++.+|||+|++|++|+++|+.+|++.|+++++.+++.|+++++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999999766 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTA 176 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l~ 176 (352)
+++++++|.+++ +||+|++||||||++||+||++||+|++.+++++++|+|+.+++++||+.|+++||++||++++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 156 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLA 156 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999999984 4899999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC-CCCCceEEEEEeCCCeEEc
Q psy2869 177 ILTLKEGFEGQ-MTAENIEIGIADENGFRRL 206 (352)
Q Consensus 177 ~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l 206 (352)
.+||+.+.+|| .++++++|++|+++|++++
T Consensus 157 ~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 157 RRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 99999999999 9999999999999998765
No 24
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-43 Score=313.54 Aligned_cols=186 Identities=23% Similarity=0.318 Sum_probs=178.4
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.+++.+ +++.+|||+|+++++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999988775 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHT 175 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 175 (352)
+++++++|.+++.. |||++++||||||+ .+|+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||+++
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l 159 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL 159 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999887653 89999999999996 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-CCCCceEEEEEeCCCeEEc
Q psy2869 176 AILTLKEGFEGQ-MTAENIEIGIADENGFRRL 206 (352)
Q Consensus 176 ~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l 206 (352)
+.+||+.+.+|| .++++++|++|+++|++.+
T Consensus 160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 160 MKKCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 999999999999 9999999999999998764
No 25
>KOG0863|consensus
Probab=100.00 E-value=1.1e-43 Score=304.83 Aligned_cols=217 Identities=32% Similarity=0.562 Sum_probs=207.4
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcCccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQ 80 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~ 80 (352)
|+|||+|||||++|+++|++.||+|.++..||++-+|..+.+ ++.++|||+|++|+++.++|+++|++.|.++++.+|.
T Consensus 15 PqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seL-ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~ 93 (264)
T KOG0863|consen 15 PQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSEL-SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECL 93 (264)
T ss_pred CcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHH-HHhhheeEecccccceEEeccCcchHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999887776 4677999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHH
Q psy2869 81 QYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLE 160 (352)
Q Consensus 81 ~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le 160 (352)
.++..+++++++..+...|++.+|..||+.+.|||||.++++|+|+.||+||.++|+|++.++++.+||+.|+.++++||
T Consensus 94 ~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLE 173 (264)
T KOG0863|consen 94 NSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLE 173 (264)
T ss_pred hhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeeecccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCC--CCCHHHHHHHHHHHHHHhhccC--CCCCceEEEEEeCCC-eEEcChhHHHHHHhhC
Q psy2869 161 KRYSE--DLELDDAVHTAILTLKEGFEGQ--MTAENIEIGIADENG-FRRLDVATVRDHLSNI 218 (352)
Q Consensus 161 ~~~~~--~~s~~eai~l~~~~l~~~~~~d--~~~~~iei~ii~~~g-~~~l~~~ei~~~l~~i 218 (352)
++..+ +++.||.+..++.+|+.....| +++.+++|.|+.++. |+.++.+++.+++...
T Consensus 174 r~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~~~ 236 (264)
T KOG0863|consen 174 RNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVDLF 236 (264)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHHHh
Confidence 98864 8999999999999999999866 899999999999886 9999999999877655
No 26
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-43 Score=312.38 Aligned_cols=184 Identities=17% Similarity=0.229 Sum_probs=175.1
Q ss_pred CCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q psy2869 17 AGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQ 94 (352)
Q Consensus 17 ~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 94 (352)
+|+|+|||+++||||||+|++.+++++ .++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++.+++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 699999999999999999999999987 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecc-eEEecCCCchhHHHHHhhcCCCCCHHHH
Q psy2869 95 LVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWK-ATAMGRNYVNGKTFLEKRYSEDLELDDA 172 (352)
Q Consensus 95 la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~ea 172 (352)
+|++|++.++.++ .|||+|++||||||++ +|+||.+||+|++..++ ++|+|+|++.++++||+.|+++||++||
T Consensus 82 la~~l~~~ly~~r----~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 157 (195)
T cd03759 82 FSSLISSLLYEKR----FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDEL 157 (195)
T ss_pred HHHHHHHHHHHhc----CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHH
Confidence 9999999986543 5899999999999965 79999999999998887 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCCceEEEEEeCCCeE
Q psy2869 173 VHTAILTLKEGFEGQ-MTAENIEIGIADENGFR 204 (352)
Q Consensus 173 i~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~ 204 (352)
++++++||+.+.+|| .++++++|++|+++|++
T Consensus 158 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~ 190 (195)
T cd03759 158 FETISQALLSAVDRDALSGWGAVVYIITKDKVT 190 (195)
T ss_pred HHHHHHHHHHHHhhCcccCCceEEEEEcCCcEE
Confidence 999999999999999 99999999999999964
No 27
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-43 Score=312.43 Aligned_cols=190 Identities=16% Similarity=0.226 Sum_probs=177.8
Q ss_pred CCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q psy2869 17 AGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQ-QYKLVYQENIPTQ 93 (352)
Q Consensus 17 ~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~ 93 (352)
.|+|+|||+++||||||+|+|.+.+.+ +++.+|||+|++|++|+++|..+|++.+++++|.+++ .+++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999985544 7889999999999999999999999999999999987 5678899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCC--CCCHH
Q psy2869 94 QLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE--DLELD 170 (352)
Q Consensus 94 ~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~~s~~ 170 (352)
.+++++++++ |++++++|||+|++||||||+ ++|+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||++
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999986 566677999999999999997 589999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeEEcCh
Q psy2869 171 DAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFRRLDV 208 (352)
Q Consensus 171 eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~ 208 (352)
||++++++||+.+.+|| .++++++|++|+++|++.-.|
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 197 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEGP 197 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCCC
Confidence 99999999999999999 999999999999999876543
No 28
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.2e-42 Score=303.76 Aligned_cols=182 Identities=30% Similarity=0.464 Sum_probs=175.6
Q ss_pred CCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy2869 18 GAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQL 95 (352)
Q Consensus 18 G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 95 (352)
|+|+|||+++||||||+|+|.+.+.+ +++.+|||+|+++++|+++|..+|++.+.++++.+++.|+..++.+++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999986655 7789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHH
Q psy2869 96 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHT 175 (352)
Q Consensus 96 a~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 175 (352)
++++++++|.+ .+|||+|++||||||++||+||.+||+|++.+++++++|+++.+++++||+.|+++||++||+++
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 156 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKL 156 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999999887 38999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-CCCCceEEEEEeCCCe
Q psy2869 176 AILTLKEGFEGQ-MTAENIEIGIADENGF 203 (352)
Q Consensus 176 ~~~~l~~~~~~d-~~~~~iei~ii~~~g~ 203 (352)
+++||+.+.+|+ .++++++|++|+++|+
T Consensus 157 ~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 157 AVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 999999999999 9999999999999984
No 29
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-42 Score=310.40 Aligned_cols=187 Identities=21% Similarity=0.282 Sum_probs=177.7
Q ss_pred hcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy2869 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPT 92 (352)
Q Consensus 15 v~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 92 (352)
+++|+|+|||+++||||||+|++.+++++ +++.+|||+|+++++|+++|..+|++.+.+.++.+++.|++++++++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 46899999999999999999999999987 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcC-------
Q psy2869 93 QQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYS------- 164 (352)
Q Consensus 93 ~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~------- 164 (352)
+.++++++++++.++ .|||+|++||||||++ +|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 85 ~~la~~ls~~ly~~R----~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 160 (212)
T cd03757 85 EAIAQLLSTILYSRR----FFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV 160 (212)
T ss_pred HHHHHHHHHHHHhhc----CCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence 999999999997643 4799999999999965 6999999999999999999999999999999999985
Q ss_pred --CCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeEE
Q psy2869 165 --EDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFRR 205 (352)
Q Consensus 165 --~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~ 205 (352)
++||++||++++++||+.+.+|| .++++++|++|+++|++.
T Consensus 161 ~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~ 204 (212)
T cd03757 161 ERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEE 204 (212)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEE
Confidence 89999999999999999999999 999999999999999653
No 30
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-42 Score=302.63 Aligned_cols=185 Identities=29% Similarity=0.447 Sum_probs=178.2
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.+++.+ +++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999999766 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTA 176 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l~ 176 (352)
+++++.+|.++ +|||+|++||||+|+++|+||.+||+|++.+++++|+|+|+++++++||+.|+++|+++||++++
T Consensus 81 ~~i~~~~~~~~----~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~ 156 (188)
T cd03764 81 TLLSNILNSSK----YFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLA 156 (188)
T ss_pred HHHHHHHHhcC----CCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 99999998864 79999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC-CCCCceEEEEEeCCCeEEcC
Q psy2869 177 ILTLKEGFEGQ-MTAENIEIGIADENGFRRLD 207 (352)
Q Consensus 177 ~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~ 207 (352)
++||+.+.+|| .++++++|++|+++|+++++
T Consensus 157 ~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~~ 188 (188)
T cd03764 157 IRAIKSAIERDSASGDGIDVVVITKDGYKELE 188 (188)
T ss_pred HHHHHHHHhhcCCCCCcEEEEEECCCCeEeCC
Confidence 99999999999 99999999999999988764
No 31
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.3e-42 Score=308.59 Aligned_cols=207 Identities=14% Similarity=0.201 Sum_probs=181.1
Q ss_pred cEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEec----CcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCC-CCCHH
Q psy2869 20 PSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPIT----DYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE-NIPTQ 93 (352)
Q Consensus 20 tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~~ 93 (352)
=+|||+++||||||+|+|++++++ .++.+|||+|+ +||+|+.||+.+|++.+++++|.+++.|++++|+ +++++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~ 81 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF 81 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence 379999999999999999999987 66789999998 8999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHH-HhhcCC-----CccceEEEeEEEEeC-CCCEEEEECCCCcEEec----ceEEecCCCchhHHHHHhh
Q psy2869 94 QLVQRVAAIMQE-YTQSGG-----VRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAW----KATAMGRNYVNGKTFLEKR 162 (352)
Q Consensus 94 ~la~~l~~~~~~-~~~~~~-----~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~----~~~a~G~gs~~~~~~Le~~ 162 (352)
.+|+++++++++ ++++.+ .|||+|++||||||+ +||+||.+||+|++.++ +++|+|. +.+++++||++
T Consensus 82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~ 160 (236)
T cd03765 82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRV 160 (236)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHh
Confidence 999999998654 555554 489999999999995 58999999999999999 4589996 79999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeEE-----cChhH--HHHHHhhCccchHHHHh
Q psy2869 163 YSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFRR-----LDVAT--VRDHLSNIPQSVHTAIL 227 (352)
Q Consensus 163 ~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~-----l~~~e--i~~~l~~i~~~~~~~~~ 227 (352)
|+++||++||++++++||..+++|| .++.+++|++|+++|++. ++.++ ..++-..+.+..-.+.+
T Consensus 161 yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03765 161 ITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIEEDDPYFAMIRKAWSEALREAFD 233 (236)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEecCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 999999999999999643 44444 44444444444444443
No 32
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.1e-42 Score=300.71 Aligned_cols=185 Identities=18% Similarity=0.264 Sum_probs=177.0
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.+++.+ .++.+|||+|+++++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999999865 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTA 176 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l~ 176 (352)
+++++.+|.++ .||+|++||||||++||+||.+||+|++.+++++++|+++..++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~ 155 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLV 155 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 99999998764 3999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC-CCCCceEEEEEeCCCeEEcCh
Q psy2869 177 ILTLKEGFEGQ-MTAENIEIGIADENGFRRLDV 208 (352)
Q Consensus 177 ~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~ 208 (352)
++||+.+.+|| .++++++|++|+++|++...|
T Consensus 156 ~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~ 188 (189)
T cd03763 156 CEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRN 188 (189)
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCCcEEEecC
Confidence 99999999999 899999999999999887654
No 33
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.6e-41 Score=295.49 Aligned_cols=182 Identities=14% Similarity=0.250 Sum_probs=174.7
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.+++.+ +++.+|||+|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 5899999999999999999999766 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHT 175 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 175 (352)
+++++++|.++ |||+|++||||+|+ +||+||.+||+|++.+++++++|+|+.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l 155 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKF 155 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999998876 78999999999996 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-CCCCceEEEEEeCCCeEE
Q psy2869 176 AILTLKEGFEGQ-MTAENIEIGIADENGFRR 205 (352)
Q Consensus 176 ~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~ 205 (352)
+++||+.+.+|| .++++++|++|+++|++.
T Consensus 156 ~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 156 VKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred HHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 999999999999 999999999999999754
No 34
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-40 Score=291.02 Aligned_cols=184 Identities=23% Similarity=0.403 Sum_probs=177.6
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|++.++++. .++.+|||+|+++++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999999988 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHT 175 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 175 (352)
+++++.+|.+++ |||++++||||+|+ ++|+||.+||+|++.+++++++|.++++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~ 156 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVEL 156 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 999999999885 89999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-CCCCceEEEEEeCCCeEEc
Q psy2869 176 AILTLKEGFEGQ-MTAENIEIGIADENGFRRL 206 (352)
Q Consensus 176 ~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l 206 (352)
+.+||..+.++| .++++++|++|+++|++..
T Consensus 157 ~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 157 VKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred HHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 999999999999 9999999999999997653
No 35
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=1.1e-39 Score=287.55 Aligned_cols=184 Identities=36% Similarity=0.647 Sum_probs=176.1
Q ss_pred hcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccc-cccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCC
Q psy2869 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDC-IHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIP 91 (352)
Q Consensus 15 v~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~-~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 91 (352)
|++|+|+|||+++||||||+|++.+.+.. .++ .+|||+|++|++++++|..+|++.+.++++.+++.|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 57999999999999999999999996655 344 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCC-CEEEEECCCCcEEec-ceEEecCCCchhHHHHHhhcCCCCCH
Q psy2869 92 TQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAW-KATAMGRNYVNGKTFLEKRYSEDLEL 169 (352)
Q Consensus 92 ~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~g-p~Ly~iDp~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~ 169 (352)
++.+++.++++++.++++.++||+++++|+||||+++ |+||.+||+|++.++ +++++|+|++.++++|++.|+++|++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 9999999999999999999999999999999999875 999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC-CCCCceEEEEE
Q psy2869 170 DDAVHTAILTLKEGFEGQ-MTAENIEIGIA 198 (352)
Q Consensus 170 ~eai~l~~~~l~~~~~~d-~~~~~iei~ii 198 (352)
+||++++++||+.+.++| .++++++|++|
T Consensus 161 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 161 EEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999 99999999987
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=7.5e-39 Score=280.26 Aligned_cols=178 Identities=40% Similarity=0.675 Sum_probs=172.5
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|++.++++. .++.+|||+|+++++++++|..+|++.+.++++.++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999999987 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHT 175 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 175 (352)
+++++++|.++++ .|||++++||||+|+ ++|+||.+||+|++.+++++++|+++.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 158 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIEL 158 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHH
Confidence 9999999999976 899999999999997 6999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-CCCCceEEEEE
Q psy2869 176 AILTLKEGFEGQ-MTAENIEIGIA 198 (352)
Q Consensus 176 ~~~~l~~~~~~d-~~~~~iei~ii 198 (352)
+++||..+.+++ .++.+++|+++
T Consensus 159 ~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 159 ALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999 79999999875
No 37
>KOG0177|consensus
Probab=100.00 E-value=3.5e-37 Score=257.79 Aligned_cols=187 Identities=21% Similarity=0.300 Sum_probs=180.8
Q ss_pred cEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q psy2869 20 PSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQ 97 (352)
Q Consensus 20 tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~ 97 (352)
+++||++.|+|++|+||...++.+ +++++|++++++++.|+++|..+|+.++.+++.+.++.|++++|.+++|+.+|+
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 689999999999999999999988 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHHH
Q psy2869 98 RVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTA 176 (352)
Q Consensus 98 ~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l~ 176 (352)
++++.+.++.+. .+||.|++++||+|++ ||.||++|..|+..+.++++.|.++.++.++|++.|+||||.+||+++.
T Consensus 83 FtR~~La~~LRs--r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lm 160 (200)
T KOG0177|consen 83 FTRRELAESLRS--RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLM 160 (200)
T ss_pred HHHHHHHHHHhc--CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHH
Confidence 999999998864 6899999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC-CCCCceEEEEEeCCCeEEcCh
Q psy2869 177 ILTLKEGFEGQ-MTAENIEIGIADENGFRRLDV 208 (352)
Q Consensus 177 ~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~ 208 (352)
.+|+.++.+|. .+..+|.|.||+|||++.++.
T Consensus 161 kKCv~El~kRlvin~~~f~v~IVdkdGir~~~~ 193 (200)
T KOG0177|consen 161 KKCVLELKKRLVINLPGFIVKIVDKDGIRKLDD 193 (200)
T ss_pred HHHHHHHHHhcccCCCCcEEEEEcCCCceeccc
Confidence 99999999999 999999999999999887764
No 38
>KOG0174|consensus
Probab=100.00 E-value=1.5e-34 Score=242.57 Aligned_cols=197 Identities=18% Similarity=0.266 Sum_probs=186.4
Q ss_pred HhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCC
Q psy2869 14 AVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIP 91 (352)
Q Consensus 14 av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 91 (352)
.+..|+|++||++++||||++|+|++.|.+ ++..+|+.+|.|+|+||-||.++|.|.+.+.++.++..|...++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 467899999999999999999999999988 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHH
Q psy2869 92 TQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELD 170 (352)
Q Consensus 92 ~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ 170 (352)
+...|+.++++.|+|+.. +.+.+||||||+. |.++|.+--.|+..+.+++.-|+||.+++++++..|+|+|++|
T Consensus 95 v~~aA~l~r~~~Y~~re~-----L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~E 169 (224)
T KOG0174|consen 95 VHTAASLFREICYNYREM-----LSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLE 169 (224)
T ss_pred HHHHHHHHHHHHHhCHHh-----hhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHH
Confidence 999999999999998865 8899999999997 8999999888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccC-CCCCceEEEEEeCCC--eEEcChhHHHHHH
Q psy2869 171 DAVHTAILTLKEGFEGQ-MTAENIEIGIADENG--FRRLDVATVRDHL 215 (352)
Q Consensus 171 eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g--~~~l~~~ei~~~l 215 (352)
|++++.++++..+++|| .+++-+.+.+|+++| .+.+.++++.++.
T Consensus 170 E~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 170 ECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFA 217 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccc
Confidence 99999999999999999 999999999999999 4688888887643
No 39
>KOG0175|consensus
Probab=100.00 E-value=2.5e-34 Score=250.83 Aligned_cols=200 Identities=18% Similarity=0.309 Sum_probs=191.9
Q ss_pred hcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy2869 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPT 92 (352)
Q Consensus 15 v~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 92 (352)
..+|||.+|++++.|||+|+|+|.+.|.+ .+.++||.+||++.+-.++|-++|++..-+.+.++|+.|++++++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 36899999999999999999999999988 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHH
Q psy2869 93 QQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDA 172 (352)
Q Consensus 93 ~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ea 172 (352)
...++.|++++++|+.++ +.+..+|||||+.||.||++|..|+-...+-+++|+|+.+|.++|++.|++|||.+||
T Consensus 148 saASKllsN~~y~YkGmG----LsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA 223 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMG----LSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEA 223 (285)
T ss_pred HHHHHHHHHHHhhccCcc----hhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHH
Confidence 999999999999999654 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCCceEEEEEeCCCeEEcChhHHHHHHhhC
Q psy2869 173 VHTAILTLKEGFEGQ-MTAENIEIGIADENGFRRLDVATVRDHLSNI 218 (352)
Q Consensus 173 i~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~~ei~~~l~~i 218 (352)
.+|+++++..+..|| .+++.+.++.|+++|+..+++.++.+++..+
T Consensus 224 ~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L~~~~ 270 (285)
T KOG0175|consen 224 YDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSELHYHY 270 (285)
T ss_pred HHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHHHHHHHH
Confidence 999999999999999 9999999999999999999999999985444
No 40
>KOG0173|consensus
Probab=100.00 E-value=1.1e-33 Score=246.30 Aligned_cols=187 Identities=18% Similarity=0.305 Sum_probs=177.4
Q ss_pred HHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCC
Q psy2869 13 AAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENI 90 (352)
Q Consensus 13 ~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 90 (352)
++.+.|+|++||.++|||||++|+|.+.|.+ +.+.+||+.|.++|+||.+|-++|...+.+.+..+++.|+++.++.+
T Consensus 32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~ 111 (271)
T KOG0173|consen 32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKP 111 (271)
T ss_pred cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCC
Confidence 3457899999999999999999999999988 88999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHH
Q psy2869 91 PTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELD 170 (352)
Q Consensus 91 ~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ 170 (352)
.+-...+++.+.+..|..+ .++.+|++|+|+.|||||.+.|.|+....+|.+.|+|+..++++||.+|+|||++|
T Consensus 112 rVv~A~~mlkQ~LFrYqG~-----IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~e 186 (271)
T KOG0173|consen 112 RVVTALRMLKQHLFRYQGH-----IGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKE 186 (271)
T ss_pred ceeeHHHHHHHHHHHhcCc-----ccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHH
Confidence 9999999999999777744 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeE
Q psy2869 171 DAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFR 204 (352)
Q Consensus 171 eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~ 204 (352)
||++|+.+++...+..| -++.++++|||++.+..
T Consensus 187 ea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~ 221 (271)
T KOG0173|consen 187 EAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVE 221 (271)
T ss_pred HHHHHHHHHHHhhhccccCCCCceeEEEEeCCCcc
Confidence 99999999999999999 89999999999987743
No 41
>KOG0179|consensus
Probab=100.00 E-value=4.7e-33 Score=236.17 Aligned_cols=186 Identities=22% Similarity=0.277 Sum_probs=176.4
Q ss_pred hcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy2869 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPT 92 (352)
Q Consensus 15 v~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 92 (352)
..+|+|+|||++.|+.|+|+|||.+++.. ++..+|||+++|++.++.+|..+|+..|...++..++.|+..++..|++
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 46899999999999999999999999877 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcC-------
Q psy2869 93 QQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYS------- 164 (352)
Q Consensus 93 ~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~------- 164 (352)
..+|+.|+..+|..+ +.||.+..|+||+|++ .+.+|..||.|++.+..+.|.|+++.+++|+|+....
T Consensus 106 ~s~A~lls~~LY~kR----FFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e 181 (235)
T KOG0179|consen 106 HSAAQLLSTILYSKR----FFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE 181 (235)
T ss_pred HHHHHHHHHHHhhcc----cccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence 999999999998877 8899999999999996 6999999999999999999999999999999998543
Q ss_pred ----CCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeE
Q psy2869 165 ----EDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFR 204 (352)
Q Consensus 165 ----~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~ 204 (352)
..+|+|+|+.++.+++..+.+|| .+++.++|+|++++|++
T Consensus 182 ~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~ 226 (235)
T KOG0179|consen 182 NAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVE 226 (235)
T ss_pred cCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEE
Confidence 24899999999999999999999 99999999999999954
No 42
>KOG0185|consensus
Probab=100.00 E-value=1.6e-32 Score=236.85 Aligned_cols=197 Identities=15% Similarity=0.226 Sum_probs=183.0
Q ss_pred HhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHH-HHhCCCC
Q psy2869 14 AVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYK-LVYQENI 90 (352)
Q Consensus 14 av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~i 90 (352)
..-.|++|||+|++||||+|+|+..++|++ .++++|||+|+||+++|+||..+|.|.+.+.+.....+.. +..|+.+
T Consensus 37 p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l 116 (256)
T KOG0185|consen 37 PIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSL 116 (256)
T ss_pred ceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccccccccccc
Confidence 445799999999999999999999999999 8999999999999999999999999999999988766643 5667999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcC---CC
Q psy2869 91 PTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYS---ED 166 (352)
Q Consensus 91 ~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~---~~ 166 (352)
.|+.++.+|...+|..+ +.+.|++.+++|||+|++ .|+|-++|-.|..++.+..|+|.|.+.++++|++.|+ ++
T Consensus 117 ~Pk~ih~yltrvlY~rR--sKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~ 194 (256)
T KOG0185|consen 117 GPKAIHSYLTRVLYARR--SKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGED 194 (256)
T ss_pred ChHHHHHHHHHHHHHhh--hccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchh
Confidence 99999999999997766 668999999999999995 7999999999999999999999999999999999998 47
Q ss_pred CCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeEEcChhHHH
Q psy2869 167 LELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFRRLDVATVR 212 (352)
Q Consensus 167 ~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~~ei~ 212 (352)
++.+||.+++.+||+....|| .+..+|+|++|+++|++.-.|..+.
T Consensus 195 ~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~ 241 (256)
T KOG0185|consen 195 LSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVK 241 (256)
T ss_pred hHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeee
Confidence 999999999999999999999 8999999999999999888887765
No 43
>KOG0181|consensus
Probab=99.97 E-value=1.4e-31 Score=224.78 Aligned_cols=129 Identities=51% Similarity=0.752 Sum_probs=122.2
Q ss_pred HHhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEE
Q psy2869 214 HLSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLI 293 (352)
Q Consensus 214 ~l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll 293 (352)
-++.+..++++.+ |||..|+|.|+++.|..+..|...|+++||+.+|.+.++..+|.|||.++.||||+++++
T Consensus 64 KV~~i~~~IG~vY-------SGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslli 136 (233)
T KOG0181|consen 64 KVEKITPHIGCVY-------SGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLI 136 (233)
T ss_pred hHhhccCCcceEE-------ecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEE
Confidence 3677777777766 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCcccccccc
Q psy2869 294 CGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAE 349 (352)
Q Consensus 294 ~G~d~~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~ 349 (352)
+|||+++|.||++||||+|..|+++|+|.++..|++||||+|++++.-..+.|.|.
T Consensus 137 aG~~~~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtai 192 (233)
T KOG0181|consen 137 AGWDEGGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAI 192 (233)
T ss_pred eecCCCceeEEEECCccceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999998888877764
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=7.5e-30 Score=219.73 Aligned_cols=164 Identities=15% Similarity=0.097 Sum_probs=143.4
Q ss_pred CCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q psy2869 18 GAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPI-TDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQ 94 (352)
Q Consensus 18 G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 94 (352)
|+|+|||+++||||||+|+|++.|.+ +++.+||++| +++++|+++|..+|++.|.+.++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 68999999999999999999999988 8899999999 9999999999999999999999999999882 22 455
Q ss_pred HHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEec--ceEEecCCCchhHHHHHhhcC-CCCCHHH
Q psy2869 95 LVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAW--KATAMGRNYVNGKTFLEKRYS-EDLELDD 171 (352)
Q Consensus 95 la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~--~~~a~G~gs~~~~~~Le~~~~-~~~s~~e 171 (352)
+++.+.. ++.+...+|+.+++|++ |+ |+||.+||.|++.+. +++++|+|+.++.++||+.|+ ++| |
T Consensus 76 ~a~l~~~----l~~~~~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---e 144 (172)
T PRK05456 76 AVELAKD----WRTDRYLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---S 144 (172)
T ss_pred HHHHHHH----HHhccCCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---C
Confidence 5544432 22223347888999994 43 799999999999777 799999999999999999999 999 9
Q ss_pred HHHHHHHHHHHhhccC-CCCCceEEEE
Q psy2869 172 AVHTAILTLKEGFEGQ-MTAENIEIGI 197 (352)
Q Consensus 172 ai~l~~~~l~~~~~~d-~~~~~iei~i 197 (352)
|++++++|++.+.+|| .++++++|-.
T Consensus 145 A~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 145 AEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 9999999999999999 9999998854
No 45
>KOG0180|consensus
Probab=99.97 E-value=6.9e-30 Score=210.58 Aligned_cols=184 Identities=17% Similarity=0.237 Sum_probs=176.3
Q ss_pred cCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy2869 16 EAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQ 93 (352)
Q Consensus 16 ~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 93 (352)
-+|++|||+++|+||.+|+|.|....+. ..+.+|||++.|++++|.+|+..|++.+.++++...+.|+++.++.+.|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 4799999999999999999999988777 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEec-ceEEecCCCchhHHHHHhhcCCCCCHHH
Q psy2869 94 QLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAW-KATAMGRNYVNGKTFLEKRYSEDLELDD 171 (352)
Q Consensus 94 ~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~~e 171 (352)
.++.++|.++|+.+ +-||-+..+|||+|++ .|++..+|..|..... ++.+.|.++....+++|..|+|||..|+
T Consensus 86 ~~s~mvS~~lYekR----fgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~ 161 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKR----FGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDE 161 (204)
T ss_pred HHHHHHHHHHHHhh----cCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999988 6699999999999997 8999999999998766 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCCceEEEEEeCCCe
Q psy2869 172 AVHTAILTLKEGFEGQ-MTAENIEIGIADENGF 203 (352)
Q Consensus 172 ai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~ 203 (352)
..+.+..+|-.+.+|| ++++...|++|+||.+
T Consensus 162 LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv 194 (204)
T KOG0180|consen 162 LFETISQALLNAVDRDALSGWGAVVYIITKDKV 194 (204)
T ss_pred HHHHHHHHHHhHhhhhhhccCCeEEEEEccchh
Confidence 9999999999999999 9999999999999974
No 46
>KOG0183|consensus
Probab=99.97 E-value=3.4e-31 Score=225.51 Aligned_cols=118 Identities=35% Similarity=0.502 Sum_probs=109.0
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCC-CeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~g-p~ly~~dp~G 310 (352)
.|||+.||++.|++.+|-+|+.|+++.+.|++++.++++|+.+.|.|||.+++||||++.||+|+|++| |+||++||||
T Consensus 73 afaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG 152 (249)
T KOG0183|consen 73 AFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSG 152 (249)
T ss_pred EecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCc
Confidence 459999999999999999999999999999999999999999999999999999999999999999876 9999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCC--CCCcccccccc
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLR--VPNFCGYHIAE 349 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~--~~~~~~~~~~~ 349 (352)
.|.+|+|.|+|.+|+.++.||||+|++. .++-++-.|+.
T Consensus 153 ~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~i 193 (249)
T KOG0183|consen 153 IFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAI 193 (249)
T ss_pred chhhhhccccccccHHHHHHHHHhcccccccccccHHHHHH
Confidence 9999999999999999999999999987 33444444443
No 47
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.96 E-value=1.3e-28 Score=210.50 Aligned_cols=162 Identities=14% Similarity=0.034 Sum_probs=139.6
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecC-cEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITD-YIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQL 95 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 95 (352)
+|+|||+++||||||+|+|++.|.+ +++.+||++|++ |++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 6899999999999999999999988 889999999999 999999999999999999999999999988773 34
Q ss_pred HHHHHHHHHHHhhcCCCccce-EEEeEEEEeCCCCEEEEECCCCcEEecc--eEEecCCCchhHHHHHhhcCCC-CCHHH
Q psy2869 96 VQRVAAIMQEYTQSGGVRPFG-VSLLICGWDNKRPYLYQCDPSGAYFAWK--ATAMGRNYVNGKTFLEKRYSED-LELDD 171 (352)
Q Consensus 96 a~~l~~~~~~~~~~~~~rP~~-v~~ivaG~D~~gp~Ly~iDp~G~~~~~~--~~a~G~gs~~~~~~Le~~~~~~-~s~~e 171 (352)
++.+..++ .+ ..+|+. +.++++++ ++||.+||.|++.+.+ +.++|+|+.++.++||..|+++ ||
T Consensus 76 a~l~~~l~-~~----~~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms--- 143 (171)
T cd01913 76 VELAKDWR-TD----RYLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS--- 143 (171)
T ss_pred HHHHHHHH-hc----cCcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---
Confidence 44433322 12 245555 66776644 4999999999999995 9999999999999999999995 99
Q ss_pred HHHHHHHHHHHhhccC-CCCCceEEEE
Q psy2869 172 AVHTAILTLKEGFEGQ-MTAENIEIGI 197 (352)
Q Consensus 172 ai~l~~~~l~~~~~~d-~~~~~iei~i 197 (352)
+.++++++++.+.+|| .++++++|-.
T Consensus 144 ~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 5599999999999999 9999998754
No 48
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.96 E-value=5e-28 Score=206.26 Aligned_cols=160 Identities=37% Similarity=0.534 Sum_probs=155.1
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+||++++||||+|+|++.+.+.. .....|+++++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999999888 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEec-ceEEecCCCchhHHHHHhhcCCCCCHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAW-KATAMGRNYVNGKTFLEKRYSEDLELDDAVHT 175 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 175 (352)
+.+++.++.+++ .||+++++|+||+|+++|+||.+||+|++.++ .++++|.++..+.++|++.|+++|+++|++++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL 157 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999987 79999999999999989999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHH
Q psy2869 176 AILTLK 181 (352)
Q Consensus 176 ~~~~l~ 181 (352)
+.+||.
T Consensus 158 ~~~~l~ 163 (164)
T cd01901 158 ALKALK 163 (164)
T ss_pred HHHHHh
Confidence 999985
No 49
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.96 E-value=2.8e-28 Score=208.46 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=138.9
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPI-TDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQL 95 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 95 (352)
+|+|||+++||||||+|+|++.|.+ +++.+||++| ++|++|+++|..+|++.|.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999999988 8899999999 599999999999999999999999999988643 3555
Q ss_pred HHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEec--ceEEecCCCchhHHHHHhhc-CCCCCHHHH
Q psy2869 96 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAW--KATAMGRNYVNGKTFLEKRY-SEDLELDDA 172 (352)
Q Consensus 96 a~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~--~~~a~G~gs~~~~~~Le~~~-~~~~s~~ea 172 (352)
++.+++ ++.+...+.+.+.+|++++ ++||.+||.|++.+. ++.++|+|+.++.++||..| +++|+ |
T Consensus 76 a~l~~~----~~~~~~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a 144 (171)
T TIGR03692 76 VELAKD----WRTDRYLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---A 144 (171)
T ss_pred HHHHHH----HhhcccccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---H
Confidence 555444 3222223334577777644 499999999999997 59999999999999999999 47778 9
Q ss_pred HHHHHHHHHHhhccC-CCCCceEEEE
Q psy2869 173 VHTAILTLKEGFEGQ-MTAENIEIGI 197 (352)
Q Consensus 173 i~l~~~~l~~~~~~d-~~~~~iei~i 197 (352)
++++.++++.+.+|| .++++++|-.
T Consensus 145 ~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 145 EEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999999999999999 9999998754
No 50
>KOG0178|consensus
Probab=99.96 E-value=2e-29 Score=214.17 Aligned_cols=153 Identities=33% Similarity=0.413 Sum_probs=128.5
Q ss_pred ceEEEEEeCCCeEEcCh-hHHHHH------HhhC-ccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCC
Q psy2869 192 NIEIGIADENGFRRLDV-ATVRDH------LSNI-PQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIP 263 (352)
Q Consensus 192 ~iei~ii~~~g~~~l~~-~ei~~~------l~~i-~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 263 (352)
..-|.++.+||+-.... .+..++ .+++ .-+.+++| ..+|+++|+.+|++.+|..+++|.++||++||
T Consensus 32 Gt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC-----~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP 106 (249)
T KOG0178|consen 32 GTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIAC-----AVAGLTSDANVLKNYARIIAQRYLFRYGEEIP 106 (249)
T ss_pred cceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEE-----EEecccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 45677888888422221 222222 3344 34455555 45999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCCC-C
Q psy2869 264 TQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVP-N 341 (352)
Q Consensus 264 ~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~-~ 341 (352)
+++|++.|+++.|.||||+|.||||||+|.+|||+ .|.+||+.||||+|..|||+|+|.+++.|++.|...|+++.. -
T Consensus 107 ~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~ 186 (249)
T KOG0178|consen 107 CEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDL 186 (249)
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccH
Confidence 99999999999999999999999999999999997 489999999999999999999999999999999999999976 6
Q ss_pred cccccccc
Q psy2869 342 FCGYHIAE 349 (352)
Q Consensus 342 ~~~~~~~~ 349 (352)
.+|-++|.
T Consensus 187 ~eA~~lai 194 (249)
T KOG0178|consen 187 EEAKALAI 194 (249)
T ss_pred HHHHHHHH
Confidence 66666653
No 51
>KOG0176|consensus
Probab=99.96 E-value=4e-29 Score=210.36 Aligned_cols=152 Identities=24% Similarity=0.347 Sum_probs=127.0
Q ss_pred ceEEEEEeCCCe------EEcChhHHHHHHhhC-ccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCH
Q psy2869 192 NIEIGIADENGF------RRLDVATVRDHLSNI-PQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPT 264 (352)
Q Consensus 192 ~iei~ii~~~g~------~~l~~~ei~~~l~~i-~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 264 (352)
.--|.|-+++|+ |..+|--...-++++ +.+.|+.| .+||+.||++.|++.+|.++++|++.||++|+|
T Consensus 35 sTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgc-----a~SGl~aDarTlve~arv~~qnh~f~Y~e~i~V 109 (241)
T KOG0176|consen 35 STAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGC-----AMSGLIADARTLVERARVETQNHWFTYGEPISV 109 (241)
T ss_pred CceeeeeccceEEEEEeccccCcccCchhhhhheehhhceee-----eccccccchHHHHHHHHHHhhhceeecCCcccH
Confidence 345666677773 333333222333444 55666666 569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcC-----CccccceeeEEEEEeCCCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCC
Q psy2869 265 QQLVQRVAAIMQEYTQSG-----GVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRV 339 (352)
Q Consensus 265 ~~l~~~ls~~~q~~t~~~-----~~RP~g~~~ll~G~d~~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~ 339 (352)
+.+++.+|++.-+|.... ..|||||++|++|+|++||+||+.||||+|..|+|.|||+||+.|++.|++.|.+++
T Consensus 110 Es~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~l 189 (241)
T KOG0176|consen 110 ESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDL 189 (241)
T ss_pred HHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceEEecceeccccchHHHHHHHHHHhhcc
Confidence 999999999999987663 259999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccc
Q psy2869 340 PNFCGYHIA 348 (352)
Q Consensus 340 ~~~~~~~~~ 348 (352)
+--+|..++
T Consensus 190 tL~ea~~~~ 198 (241)
T KOG0176|consen 190 TLKEAEKIV 198 (241)
T ss_pred cHHHHHHHH
Confidence 987776554
No 52
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=1.5e-28 Score=220.05 Aligned_cols=121 Identities=31% Similarity=0.421 Sum_probs=116.5
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.++|+.+|++.|.+++|.++.+|+..++++||++.+++.||+++|.||++++.|||+|++||+|||++||+||++||+|+
T Consensus 73 ~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs 152 (212)
T cd03751 73 AVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGV 152 (212)
T ss_pred EEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCC
Confidence 44999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.+++++|+|+|+..|+++||++|+++|+.++|..++.++|
T Consensus 153 ~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L 193 (212)
T cd03751 153 SYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVKEAAKII 193 (212)
T ss_pred EEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988887653
No 53
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4e-28 Score=220.32 Aligned_cols=119 Identities=33% Similarity=0.435 Sum_probs=115.1
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.+|++.|++++|.+++.|++.++++|+++.++++||+++|.||++ .|||||++|++|+|+++|+||++||+|+
T Consensus 74 ~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~ 151 (236)
T COG0638 74 AIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDDGGPRLYSTDPSGS 151 (236)
T ss_pred EeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcCCCCeEEEECCCCc
Confidence 45999999999999999999999999999999999999999999999998 9999999999999987799999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.+++++|+|+|++.|+++||++|+++|+..+|.++|.+||
T Consensus 152 ~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al 192 (236)
T COG0638 152 YNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKAL 192 (236)
T ss_pred eeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764
No 54
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=1.1e-27 Score=214.48 Aligned_cols=121 Identities=31% Similarity=0.410 Sum_probs=115.6
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.+|++.|.+.+|.++.+|+++++++||++.+|+.+++++|.||++++.|||+|++||+|||++||+||++||+|+
T Consensus 68 ~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~ 147 (211)
T cd03749 68 AIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGN 147 (211)
T ss_pred EEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcC
Confidence 44999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhc--CCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREK--LRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~--~~~~~~~~~~~~~~~~ 352 (352)
+.+++++|+|+|++.|+++||++|+ ++|+.+++..+|.++|
T Consensus 148 ~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l 190 (211)
T cd03749 148 YFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRAL 190 (211)
T ss_pred EeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999 4899999988887653
No 55
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=1.2e-27 Score=214.67 Aligned_cols=131 Identities=40% Similarity=0.570 Sum_probs=121.6
Q ss_pred HhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEE
Q psy2869 215 LSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLIC 294 (352)
Q Consensus 215 l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~ 294 (352)
+.++..++.++ +||+.+|++.+.+.+|.++..|+++++++|+++.+++.||.++|.||++++.|||+|++|++
T Consensus 63 I~~I~~~i~~~-------~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~ 135 (213)
T cd03752 63 IYKIDDHIACA-------VAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYA 135 (213)
T ss_pred EEEecCCEEEE-------EecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEE
Confidence 44445555554 49999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeC-CCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 295 GWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 295 G~d~-~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
|||+ .||+||.+||+|++.+++++|+|++++.++++||++|+++|+.+++..++.++|
T Consensus 136 G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al 194 (213)
T cd03752 136 GWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVL 194 (213)
T ss_pred EEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 9995 689999999999999999999999999999999999999999999999987764
No 56
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=1.3e-27 Score=213.46 Aligned_cols=121 Identities=37% Similarity=0.563 Sum_probs=116.4
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.++|+.+|++.|.+.+|.++..|+.+++++|+++.+++.|++++|.||+.++.|||+|++||+|||+ +||+||++||+|
T Consensus 70 ~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G 149 (207)
T cd03755 70 AFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSG 149 (207)
T ss_pred EEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCc
Confidence 4499999999999999999999999999999999999999999999999999999999999999996 489999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.+++++|+|+|++.++++||++|+++|+.+++.+++.++|
T Consensus 150 ~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l 191 (207)
T cd03755 150 TYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKAL 191 (207)
T ss_pred CEEcceEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987653
No 57
>KOG0863|consensus
Probab=99.94 E-value=1.4e-26 Score=199.51 Aligned_cols=128 Identities=26% Similarity=0.419 Sum_probs=119.8
Q ss_pred EcChhHHHHHHhhC-ccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCC
Q psy2869 205 RLDVATVRDHLSNI-PQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGG 283 (352)
Q Consensus 205 ~l~~~ei~~~l~~i-~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~ 283 (352)
.-..+|+..+.+++ +.+.|+.+ .+||+++|+++|.++||.+|.+|+..|++++||..|...|.+.+|..||.++
T Consensus 50 ~r~~seLss~QkKi~~iD~h~g~-----siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~yg 124 (264)
T KOG0863|consen 50 KRAQSELSSHQKKIFKIDDHIGI-----SIAGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYG 124 (264)
T ss_pred ccchhHHHHhhheeEecccccce-----EEeccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhC
Confidence 34578888888888 77777766 6799999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeEEEEEeCCCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcC
Q psy2869 284 VRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKL 337 (352)
Q Consensus 284 ~RP~g~~~ll~G~d~~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~ 337 (352)
+|||||+++++|+|+.|||||.++|+|.+.++++++||+.||.|+++||++...
T Consensus 125 rRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~ 178 (264)
T KOG0863|consen 125 RRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEE 178 (264)
T ss_pred CccccceEEEEeecCCCceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997654
No 58
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=3.5e-27 Score=213.58 Aligned_cols=120 Identities=51% Similarity=0.768 Sum_probs=116.1
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.++|+.+|++.|.+.+|.++.+|+..+|++||++.+++.|++++|.||++++.|||+|++|++|||++||+||++||+|+
T Consensus 70 ~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~ 149 (227)
T cd03750 70 VYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGS 149 (227)
T ss_pred EEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCC
Confidence 44999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
+.+++++|+|+|++.|+++||++|+++|+.+++.+++..+
T Consensus 150 ~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~ 189 (227)
T cd03750 150 YFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHTAILT 189 (227)
T ss_pred EEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764
No 59
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=4.7e-27 Score=210.96 Aligned_cols=121 Identities=31% Similarity=0.439 Sum_probs=115.2
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.++|+.+|++.|.+.+|.++..|+++++++||++.+|+.+|+++|.||++++.|||||++||+|+|+ +||+||.+||+|
T Consensus 72 ~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~G 151 (215)
T cd03754 72 VMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAG 151 (215)
T ss_pred EEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCc
Confidence 4599999999999999999999999999999999999999999999999999999999999999996 689999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCC--C--CCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLR--V--PNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~--~--~~~~~~~~~~~~~ 352 (352)
++.+++++|+|+|++.|+++||++|+++ | +.+++.+++.++|
T Consensus 152 s~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al 197 (215)
T cd03754 152 YFAGYKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCL 197 (215)
T ss_pred cEEeEEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999995 6 8899988887653
No 60
>KOG0182|consensus
Probab=99.93 E-value=1.8e-26 Score=196.49 Aligned_cols=140 Identities=28% Similarity=0.410 Sum_probs=124.9
Q ss_pred EcChhHHHHHHhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCc
Q psy2869 205 RLDVATVRDHLSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGV 284 (352)
Q Consensus 205 ~l~~~ei~~~l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~ 284 (352)
.|...+...++.++++.+++++ +|+.+|++..+.++|.++.++++.||-+||++.||+.++++.|.|||...+
T Consensus 59 KLld~~tvt~~f~itk~ig~v~-------tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~m 131 (246)
T KOG0182|consen 59 KLLDSSTVTHLFRITKKIGCVI-------TGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAM 131 (246)
T ss_pred cccccccceeEEEeeccceEEE-------ecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhh
Confidence 3334443446788888888888 999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeEEEEEeC-CCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 285 RPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 285 RP~g~~~ll~G~d~-~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
||+||.++|.|+|+ .||.+|++||+|.|.+++|+|.|...+.+..+|||+||++.. |...++.+.||
T Consensus 132 Rplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~-~t~~e~ve~ai 199 (246)
T KOG0182|consen 132 RPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDID-LTFEETVETAI 199 (246)
T ss_pred cccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccCcc-chHHHHHHHHH
Confidence 99999999999997 589999999999999999999999999999999999999744 66666655543
No 61
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.93 E-value=3.8e-26 Score=210.12 Aligned_cols=131 Identities=34% Similarity=0.520 Sum_probs=121.6
Q ss_pred HhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEE
Q psy2869 215 LSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLIC 294 (352)
Q Consensus 215 l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~ 294 (352)
+.++..++.+++ +|+.+|++.+.+.+|.++.+|++.+++++|+..+++.++..+|.|||+++.|||+|++||+
T Consensus 65 I~~I~~~i~~~~-------sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~ 137 (253)
T PTZ00246 65 IYKIDSHIFCAV-------AGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFA 137 (253)
T ss_pred EEEecCCEEEEE-------EEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEE
Confidence 445555555555 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeC-CCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 295 GWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 295 G~d~-~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
|||+ .||+||++||+|++.+++++|+|+|++.|+++||++|+++|+.++|.+++..+|
T Consensus 138 G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al 196 (253)
T PTZ00246 138 GYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVL 196 (253)
T ss_pred EEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 9995 689999999999999999999999999999999999999999999999987653
No 62
>KOG0184|consensus
Probab=99.93 E-value=7.8e-26 Score=193.87 Aligned_cols=129 Identities=25% Similarity=0.409 Sum_probs=117.4
Q ss_pred cChhHHHHHHhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCcc
Q psy2869 206 LDVATVRDHLSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVR 285 (352)
Q Consensus 206 l~~~ei~~~l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~R 285 (352)
|-..+.+..+.++.+++++++ +|+.+|.+.|...+|.++.+|+.+|+.|+|+..++.+++++.|.||.++..|
T Consensus 58 Ly~p~sn~ri~~V~r~iG~av-------aGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vR 130 (254)
T KOG0184|consen 58 LYEPGSNERIFSVDRHIGMAV-------AGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVR 130 (254)
T ss_pred ccccCCCCceEeecccccEEE-------eccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccc
Confidence 333444556777788888888 9999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeEEEEEeCCCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCCCC
Q psy2869 286 PFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPN 341 (352)
Q Consensus 286 P~g~~~ll~G~d~~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~ 341 (352)
|||++.++++||.+|||||.+||||.+.+|+++|+|+|.|.|++.|||.--+.|+-
T Consensus 131 pfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~ 186 (254)
T KOG0184|consen 131 PFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTC 186 (254)
T ss_pred cccceEEEEEEeCCCceEEEEcCCCCccceeeeeccchhHHHHHHHHhcccccccH
Confidence 99999999999999999999999999999999999999999999999865444543
No 63
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.93 E-value=3.6e-26 Score=202.00 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=117.2
Q ss_pred HhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEE
Q psy2869 215 LSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLIC 294 (352)
Q Consensus 215 l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~ 294 (352)
+.++..+..+++ +|+.+|++.|++.+|.++..|+++++++||++.+++.|++++|.|++.. |||++++|++
T Consensus 35 I~~I~~~i~~~~-------sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~--rP~~~~~li~ 105 (193)
T cd03758 35 IYKLSDHKLMAC-------SGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSR--TPYQVNLLLA 105 (193)
T ss_pred EEEeCCCeEEEE-------ccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcC--CCeEEEEEEE
Confidence 444555555555 9999999999999999999999999999999999999999999998764 9999999999
Q ss_pred EEeC-CCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 295 GWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 295 G~d~-~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
|||+ .||+||++||+|++.+++++|+|+|++.|+++||++|+++|+.+++.+++..+
T Consensus 106 G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~a 163 (193)
T cd03758 106 GYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMKKC 163 (193)
T ss_pred EEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 9996 68999999999999999999999999999999999999999999999887654
No 64
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.92 E-value=8.3e-26 Score=202.47 Aligned_cols=121 Identities=36% Similarity=0.488 Sum_probs=116.8
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.++|+.+|++.+.+.++.++..|++++++++|++.+++.||..+|.|+++++.|||+|++||+|+|+.||+||.+||+|+
T Consensus 71 ~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~ 150 (211)
T cd03756 71 ATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGA 150 (211)
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCC
Confidence 45999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.+++++|+|++++.|+++||+.|+++|+..++.+++.+++
T Consensus 151 ~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l 191 (211)
T cd03756 151 YNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKAL 191 (211)
T ss_pred eeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887653
No 65
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.92 E-value=1.1e-25 Score=205.75 Aligned_cols=121 Identities=35% Similarity=0.471 Sum_probs=117.0
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.++|+.+|++.+.+.+|.++..|+.+++++||++.+++.|++.+|.||++++.|||+|++||+|+|++||+||.+||+|+
T Consensus 79 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~ 158 (241)
T PRK03996 79 ASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGA 158 (241)
T ss_pred EEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCC
Confidence 45999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.+++++|+|+|+..|+++||++|+++|+..+|.+++.++|
T Consensus 159 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al 199 (241)
T PRK03996 159 YLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKAL 199 (241)
T ss_pred eecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987653
No 66
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.92 E-value=5.4e-26 Score=200.07 Aligned_cols=126 Identities=15% Similarity=0.217 Sum_probs=117.5
Q ss_pred HhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEE
Q psy2869 215 LSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLIC 294 (352)
Q Consensus 215 l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~ 294 (352)
+.++..+..+++ +|+.+|++.|++.+|.++.+|+++++++||++.+|+.|++++|.+|++ ||+|++||+
T Consensus 34 I~~I~~~i~~~~-------sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~~----~~~v~~li~ 102 (188)
T cd03761 34 VIEINPYLLGTM-------AGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQYKGM----GLSMGTMIC 102 (188)
T ss_pred EEEccCcEEEEe-------CccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCC----CeEEEEEEE
Confidence 445556655555 999999999999999999999999999999999999999999999876 799999999
Q ss_pred EEeCCCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 295 GWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 295 G~d~~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
|||++||+||++||+|++.++++.|+|+|++.|+++||+.|+++|+.+++.+++.++
T Consensus 103 G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~ 159 (188)
T cd03761 103 GWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRA 159 (188)
T ss_pred EEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 999889999999999999999999999999999999999999999999999988765
No 67
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.92 E-value=1.7e-25 Score=200.81 Aligned_cols=121 Identities=23% Similarity=0.354 Sum_probs=115.2
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcC-----CccccceeeEEEEEeCCCCeEEEE
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSG-----GVRPFGVSLLICGWDNKRPYLYQC 306 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~-----~~RP~g~~~ll~G~d~~gp~ly~~ 306 (352)
.++|+.+|++.+.+.+|.++.+|+.+++++||++.+++.|+..+|.|++.. ..|||+|++||+|||++||+||.+
T Consensus 70 ~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~v 149 (213)
T cd03753 70 AMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHT 149 (213)
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEE
Confidence 459999999999999999999999999999999999999999999999854 469999999999999989999999
Q ss_pred CCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 307 DPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 307 dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
||+|++.+++++|+|++++.|+++||++|+++|+.++|.+++.++|
T Consensus 150 d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l 195 (213)
T cd03753 150 DPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSIL 195 (213)
T ss_pred CCCCCeecccEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988764
No 68
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.92 E-value=4.5e-25 Score=199.47 Aligned_cols=121 Identities=33% Similarity=0.469 Sum_probs=116.9
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.+|++.|.+.++.++..|+.+++++++++.+++.|++.+|.|++.++.|||+|++||+|+|+++|+||.+||+|+
T Consensus 72 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~ 151 (224)
T TIGR03633 72 ATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGA 151 (224)
T ss_pred EEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCC
Confidence 55999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.+++++|+|+++..|+++||+.|+++|+..++.+++.+++
T Consensus 152 ~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al 192 (224)
T TIGR03633 152 LLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKAL 192 (224)
T ss_pred eecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987753
No 69
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.91 E-value=5.4e-25 Score=198.89 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=109.8
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCC-CCCHHHHHHHHHHHH-HHhhhcCC-----ccccceeeEEEEEe-CCCCeE
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATE-NIPTQQLVQRVAAIM-QEYTQSGG-----VRPFGVSLLICGWD-NKRPYL 303 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~ls~~~-q~~t~~~~-----~RP~g~~~ll~G~d-~~gp~l 303 (352)
..||+.||++.|++.+|.++.+|++++|+ +||++.+|+.+++++ |.++|+.+ .|||||++|++||| +.||+|
T Consensus 47 ~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~L 126 (236)
T cd03765 47 LTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRL 126 (236)
T ss_pred EcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEE
Confidence 34999999999999999999999999999 899999999999985 56777775 48999999999999 468999
Q ss_pred EEECCCCceeceeE----EEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 304 YQCDPSGAYFAWKA----TAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 304 y~~dp~G~~~~~~~----~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
|++||+|++.++++ +|+|+ ++.|+++||++|+++|+.++|..+|.++|
T Consensus 127 Y~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al 178 (236)
T cd03765 127 FLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSM 178 (236)
T ss_pred EEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999976 79996 79999999999999999999999987664
No 70
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.91 E-value=5.1e-25 Score=195.32 Aligned_cols=128 Identities=13% Similarity=0.125 Sum_probs=115.6
Q ss_pred HhhCccchHHHHhhccccccCCccchhHHHHHHHHHHh-hhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEE
Q psy2869 215 LSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGF-RRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLI 293 (352)
Q Consensus 215 l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll 293 (352)
+.++..++.+++ +|+.+|++.|++.+|.++. .|+..++++||++.+++.|+++ .||++++.|||+|++|+
T Consensus 36 I~~i~~~i~~~~-------sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~--~y~~~~~~rP~~v~~ii 106 (197)
T cd03760 36 IFKVGDNTLLGA-------SGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRV--LYNRRSKMNPLWNTLVV 106 (197)
T ss_pred EEEecCcEEEEe-------CcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHHHhhcCCCceEEEEE
Confidence 444455555555 9999999999999999986 5778899999999999999997 58888899999999999
Q ss_pred EEEeC-CCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcC--CCCCcccccccccc
Q psy2869 294 CGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKL--RVPNFCGYHIAESL 351 (352)
Q Consensus 294 ~G~d~-~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~--~~~~~~~~~~~~~~ 351 (352)
+|||+ .||+||++||+|++.++++.|+|+|++.++++||+.|++ +|+..++.+++.++
T Consensus 107 aG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~ 167 (197)
T cd03760 107 GGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEEC 167 (197)
T ss_pred EEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence 99997 689999999999999999999999999999999999999 99999999888665
No 71
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.91 E-value=1e-24 Score=196.35 Aligned_cols=129 Identities=14% Similarity=0.110 Sum_probs=116.1
Q ss_pred hhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEE
Q psy2869 216 SNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICG 295 (352)
Q Consensus 216 ~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G 295 (352)
.++..+..++ ++|+.+|++.|.+.+|.++..|+.+++++||++.+++.||+++|.+++ +..|||+|++||+|
T Consensus 37 ~~i~~~i~~~-------~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~-~~~rp~~v~~iiaG 108 (219)
T TIGR03690 37 YPTDEYSAVG-------IAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNLP-AAMQGLAVVPLLAG 108 (219)
T ss_pred EEcCCcEEEE-------ecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhh-hccCCceEEEEEEE
Confidence 3444555544 499999999999999999999999999999999999999999999884 45899999999999
Q ss_pred EeC--CCCeEEEECCCC-ceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 296 WDN--KRPYLYQCDPSG-AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 296 ~d~--~gp~ly~~dp~G-~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
||+ .+|+||++||+| ++.+++++|+|+|++.|+++||++|+++|+.+++.+++.++|
T Consensus 109 ~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eeai~l~~~al 168 (219)
T TIGR03690 109 YDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALRVAVEAL 168 (219)
T ss_pred ECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 995 469999999999 688889999999999999999999999999999999887653
No 72
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.91 E-value=9.1e-25 Score=197.13 Aligned_cols=154 Identities=11% Similarity=0.050 Sum_probs=126.5
Q ss_pred CceEEEEEeCCCeEEcChh--HHHHHHhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcC-CCCCHHHH
Q psy2869 191 ENIEIGIADENGFRRLDVA--TVRDHLSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVAT-ENIPTQQL 267 (352)
Q Consensus 191 ~~iei~ii~~~g~~~l~~~--ei~~~l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~l 267 (352)
+.--|++..++|+-...+. +-.+-+.+|..++++++ +|+.+|++.|++.++.++..|++.++ .+++++.+
T Consensus 27 g~T~VGIk~kdgVVLaaek~~~~~~KI~~I~d~ig~~~-------sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~l 99 (228)
T TIGR03691 27 GRSVVVLTYADGILFVAENPSRSLHKISELYDRIGFAA-------VGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGL 99 (228)
T ss_pred CCcEEEEEeCCeEEEEEecCCCCcCcEEEecCCEEEEE-------cCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHH
Confidence 3566788888884332221 11122444456666555 99999999999999999999999998 78999999
Q ss_pred HHHHHHHHHHhhhcCCccccceeeEEEEEeC--CCCeEEEECCCCceecee-EEEecCCchHHHHHHHHhhcCCCCCccc
Q psy2869 268 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDN--KRPYLYQCDPSGAYFAWK-ATAMGRNYVNGKTFLEKREKLRVPNFCG 344 (352)
Q Consensus 268 ~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~--~gp~ly~~dp~G~~~~~~-~~a~G~~s~~a~~~Le~~~~~~~~~~~~ 344 (352)
|+.+++.+..++ +++.|||||++|++|||+ +||+||.+||+|++.+++ ++|+|+|++.|+++||++|+++|+.+++
T Consensus 100 a~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eea 178 (228)
T TIGR03691 100 ANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADA 178 (228)
T ss_pred HHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHH
Confidence 987777776666 567899999999999984 689999999999999976 7999999999999999999999999999
Q ss_pred cccccccC
Q psy2869 345 YHIAESLI 352 (352)
Q Consensus 345 ~~~~~~~~ 352 (352)
.++|.++|
T Consensus 179 i~la~~aL 186 (228)
T TIGR03691 179 LGLAVQAL 186 (228)
T ss_pred HHHHHHHH
Confidence 99987653
No 73
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.90 E-value=3.1e-24 Score=188.43 Aligned_cols=116 Identities=20% Similarity=0.193 Sum_probs=110.8
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.++|+.+|++.|.+.++.+++.|+..++++||++.+++.|+..+|.+ ..|||+|++|++|+|++||+||.+||+|+
T Consensus 45 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~----~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~ 120 (185)
T TIGR03634 45 TIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSN----RFFPFIVQLLVGGVDEEGPHLYSLDPAGG 120 (185)
T ss_pred EcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc----CCCCeEEEEEEEEEeCCCCEEEEECCCCC
Confidence 45999999999999999999999999999999999999999999887 57999999999999998999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
+.++++.|+|++++.++++||+.|+++|+..+|..++..+
T Consensus 121 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~ 160 (185)
T TIGR03634 121 IIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRA 160 (185)
T ss_pred eEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988664
No 74
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.90 E-value=4.3e-24 Score=191.12 Aligned_cols=120 Identities=43% Similarity=0.618 Sum_probs=115.8
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCC-CCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~-gp~ly~~dp~G 310 (352)
+++|..+|++.+.+.++.++..|+..+|++|+++.+|+.+|.++|.|+++++.|||+|++||+|+|++ ||+||.+||+|
T Consensus 70 ~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G 149 (209)
T cd01911 70 AVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSG 149 (209)
T ss_pred EeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCC
Confidence 45999999999999999999999999999999999999999999999999999999999999999975 89999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
++.++.++|+|+|+..++++||+.|+++|+..+|.+++.++
T Consensus 150 ~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~ 190 (209)
T cd01911 150 TYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKA 190 (209)
T ss_pred CeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765
No 75
>KOG0175|consensus
Probab=99.90 E-value=1.1e-24 Score=190.66 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=119.1
Q ss_pred HHHHhh-ccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCC
Q psy2869 223 HTAILT-LKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRP 301 (352)
Q Consensus 223 ~~~~~~-l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp 301 (352)
.+++.. |.+++||..|||++|.+.|..+|++|++++++.|||...++.||+++.+|+.++ +.++.||+|||++||
T Consensus 105 VIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmG----LsmGtMi~G~Dk~GP 180 (285)
T KOG0175|consen 105 VIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMG----LSMGTMIAGWDKKGP 180 (285)
T ss_pred eeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcc----hhheeeEeeccCCCC
Confidence 333433 567889999999999999999999999999999999999999999999999886 899999999999999
Q ss_pred eEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 302 YLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 302 ~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
.||++|..|+-.+.+-+++||||..|.++|+..|+.+|++.|||+||+|||
T Consensus 181 ~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~rrAI 231 (285)
T KOG0175|consen 181 GLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLARRAI 231 (285)
T ss_pred ceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997
No 76
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.90 E-value=6.1e-24 Score=187.03 Aligned_cols=116 Identities=22% Similarity=0.185 Sum_probs=110.4
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
+++|+.+|++.|.++++.++..|+..++++++++.+++.+++++|.+ ..|||+|++|++|+|+++|+||.+||+|+
T Consensus 44 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~----~~~P~~~~~lvaG~d~~~~~ly~~D~~G~ 119 (188)
T cd03764 44 TIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSS----KYFPYIVQLLIGGVDEEGPHLYSLDPLGS 119 (188)
T ss_pred EcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc----CCCCcEEEEEEEEEeCCCCEEEEECCCCC
Confidence 55999999999999999999999999999999999999999999886 46899999999999988899999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
+.++++.|+|+|++.++++||+.|+++|+..++.+++..+
T Consensus 120 ~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~ 159 (188)
T cd03764 120 IIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRA 159 (188)
T ss_pred EEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888664
No 77
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.90 E-value=4.5e-24 Score=188.89 Aligned_cols=127 Identities=11% Similarity=0.066 Sum_probs=113.1
Q ss_pred HhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEE
Q psy2869 215 LSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLIC 294 (352)
Q Consensus 215 l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~ 294 (352)
+.++..++.+++ +|+.+|++.|++.+|.++..|++.++++||++.+|+.|++.+ |++. .|||+|++|++
T Consensus 37 I~~I~~~i~~~~-------sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~l--y~~r--~~P~~v~~ii~ 105 (195)
T cd03759 37 VFRIGDRLYIGL-------AGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLL--YEKR--FGPYFVEPVVA 105 (195)
T ss_pred EEEeCCCEEEEc-------cchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HHhc--CCCceEEEEEE
Confidence 344455555555 999999999999999999999999999999999999999987 4443 47999999999
Q ss_pred EEeCC-CCeEEEECCCCceecee-EEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 295 GWDNK-RPYLYQCDPSGAYFAWK-ATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 295 G~d~~-gp~ly~~dp~G~~~~~~-~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
|||++ ||+||++||+|++.+++ +.|+|+|++.|+++||+.|+++|+..+|.+++.+++
T Consensus 106 G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l 165 (195)
T cd03759 106 GLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQAL 165 (195)
T ss_pred EEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 99964 69999999999999998 889999999999999999999999999999987653
No 78
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.89 E-value=8.2e-24 Score=186.39 Aligned_cols=126 Identities=16% Similarity=0.147 Sum_probs=114.8
Q ss_pred HhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEE
Q psy2869 215 LSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLIC 294 (352)
Q Consensus 215 l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~ 294 (352)
+.++..+..+++ +|+.+|++.|.+.+|.++..|+.+++++|+++.+++.|++.+|.|++ ||+|++|++
T Consensus 34 i~~i~~~i~~~~-------sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~~-----p~~v~~iva 101 (189)
T cd03763 34 IHYIAPNIYCCG-------AGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQG-----HIGAALVLG 101 (189)
T ss_pred eEEecCCEEEEc-------CccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC-----ccceeEEEE
Confidence 444555555444 99999999999999999999999999999999999999999987643 999999999
Q ss_pred EEeCCCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 295 GWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 295 G~d~~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
|||++||+||.+||+|++.++++.|+|+++..++++||++|+++|+..+|.+++.+++
T Consensus 102 G~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l 159 (189)
T cd03763 102 GVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAI 159 (189)
T ss_pred eEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 9998899999999999999999999999999999999999999999999999987653
No 79
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.89 E-value=1.2e-23 Score=192.08 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=124.6
Q ss_pred CCCceEEEEEeCCCeEE-----cC------hhHHHHHHhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhh
Q psy2869 189 TAENIEIGIADENGFRR-----LD------VATVRDHLSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDV 257 (352)
Q Consensus 189 ~~~~iei~ii~~~g~~~-----l~------~~ei~~~l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~ 257 (352)
+.+.--|++..+||+-. .. +...+ -+.++..++.+++ +|+.+|++.|.+.+|.++.+|+.+
T Consensus 37 ~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~-KI~~I~~~i~~~~-------sG~~aD~~~l~~~lr~~~~~y~~~ 108 (247)
T PTZ00488 37 AHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVK-KVIEINPTLLGTM-------AGGAADCSFWERELAMQCRLYELR 108 (247)
T ss_pred CCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcC-ceEEcCCCEEEEe-------CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778887422 11 11111 2334445555544 999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhhcCCcccccee--eEEEEEeCCCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhh
Q psy2869 258 ATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS--LLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRE 335 (352)
Q Consensus 258 ~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~--~ll~G~d~~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~ 335 (352)
+|++||++.+|+.|++++|.+ |||++. +||+|||++||+||++||+|++.++++.|+|+|+..|+++||+.|
T Consensus 109 ~g~~isv~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~ 182 (247)
T PTZ00488 109 NGELISVAAASKILANIVWNY------KGMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGF 182 (247)
T ss_pred HCCCCCHHHHHHHHHHHHHhc------CCCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcC
Confidence 999999999999999999766 676665 799999988999999999999999999999999999999999999
Q ss_pred cCCCCCccccccccccC
Q psy2869 336 KLRVPNFCGYHIAESLI 352 (352)
Q Consensus 336 ~~~~~~~~~~~~~~~~~ 352 (352)
|++|+..++.+++.++|
T Consensus 183 k~dms~eEai~l~~kal 199 (247)
T PTZ00488 183 KWDLNDEEAQDLGRRAI 199 (247)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999999987653
No 80
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.89 E-value=1.8e-23 Score=184.08 Aligned_cols=116 Identities=9% Similarity=0.032 Sum_probs=109.9
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.++|+.+|++.|.+.++.+++.|+.+++++||++.+++.+++++|.++ |||+|++||+|+|+ +||+||.+||+|
T Consensus 44 ~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~-----~~~~~~~ii~G~d~~~gp~ly~~d~~G 118 (188)
T cd03762 44 CRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYK-----EMLSAGIIVAGWDEQNGGQVYSIPLGG 118 (188)
T ss_pred EecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhcc-----ccceeeEEEEEEcCCCCcEEEEECCCC
Confidence 459999999999999999999999999999999999999999998775 79999999999996 789999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.++++.+.|+|++.++++||+.|+++|+..+|.+++.+++
T Consensus 119 ~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al 160 (188)
T cd03762 119 MLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNAL 160 (188)
T ss_pred CEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988763
No 81
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.88 E-value=8.8e-23 Score=178.47 Aligned_cols=118 Identities=33% Similarity=0.429 Sum_probs=113.6
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.++|+.+|++.|.+.++.++..|+.+++++++++.+++.|++++|.+|++ .|||++++|++|+|+ .+|+||.+||+|
T Consensus 44 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G 121 (182)
T cd01906 44 AFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSG 121 (182)
T ss_pred EEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCC
Confidence 55999999999999999999999999999999999999999999999997 899999999999997 789999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
++.+++++|+|++++.++++||+.|+++|+..++.+++..+
T Consensus 122 ~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~ 162 (182)
T cd01906 122 SYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKA 162 (182)
T ss_pred CEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765
No 82
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.87 E-value=1.1e-22 Score=179.13 Aligned_cols=121 Identities=31% Similarity=0.434 Sum_probs=116.0
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCC-CeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~g-p~ly~~dp~G 310 (352)
.++|..+|++.+.+.++.++..|++.++++++++.+++.++.++|.++++.+.||+++++|++|+|+++ |+||.+||+|
T Consensus 49 ~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G 128 (190)
T PF00227_consen 49 GFSGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSG 128 (190)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTS
T ss_pred eccccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeecccc
Confidence 559999999999999999999999999999999999999999999999999999999999999999866 9999999999
Q ss_pred ceece-eEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAW-KATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~-~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.++ .+.|+|+|++.|+++||+.|+++|+..++.+++..++
T Consensus 129 ~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~~~~l 171 (190)
T PF00227_consen 129 SYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEEAIELALKAL 171 (190)
T ss_dssp EEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHHHHHHHHHHH
T ss_pred ccccccccccchhcchhhhHHHHhhccCCCCHHHHHHHHHHHH
Confidence 99999 5999999999999999999999999999999987653
No 83
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.87 E-value=6.9e-23 Score=183.62 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=111.6
Q ss_pred HhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEE
Q psy2869 215 LSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLIC 294 (352)
Q Consensus 215 l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~ 294 (352)
+.++..++.+++ +|+.+|++.|.+.+|.++..|++.+|++|+++.+++.|+.+++..+ .|||+|++||+
T Consensus 42 I~~I~~~i~~~~-------sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly~~R----~~P~~~~~iia 110 (212)
T cd03757 42 IFKLTDKCVLGS-------SGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRR----FFPYYVFNILA 110 (212)
T ss_pred EEEcCCCEEEEc-------cchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHHHhhc----CCCeEEEEEEE
Confidence 334445555555 9999999999999999999999999999999999999999984321 36999999999
Q ss_pred EEeCC-CCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhc---------CCCCCcccccccccc
Q psy2869 295 GWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREK---------LRVPNFCGYHIAESL 351 (352)
Q Consensus 295 G~d~~-gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~---------~~~~~~~~~~~~~~~ 351 (352)
|||++ +|+||++||+|++.+++++|+|+|+..|+++||+.|+ ++|+.++|.+++.++
T Consensus 111 G~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~ 177 (212)
T cd03757 111 GIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDA 177 (212)
T ss_pred EEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHH
Confidence 99964 6999999999999999999999999999999999986 789999999998765
No 84
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.87 E-value=2e-22 Score=177.45 Aligned_cols=116 Identities=18% Similarity=0.211 Sum_probs=111.2
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
+++|+.+|++.|.+.++.++..|+..++++++++.+++.+++++|.+++ |||++++|++|+|+ ++|+||.+||+|
T Consensus 44 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G 119 (189)
T cd01912 44 GTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLG 119 (189)
T ss_pred EccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCC
Confidence 4599999999999999999999999999999999999999999999887 89999999999997 689999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
++.++++.|+|++++.++++||+.|+++|+..++.+++.++
T Consensus 120 ~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~ 160 (189)
T cd01912 120 SLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKA 160 (189)
T ss_pred CeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765
No 85
>KOG0173|consensus
Probab=99.74 E-value=3.6e-18 Score=149.55 Aligned_cols=152 Identities=15% Similarity=0.166 Sum_probs=130.4
Q ss_pred CCCCceEEEEEeCCCe-----------EEcChhHHHHHHhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhh
Q psy2869 188 MTAENIEIGIADENGF-----------RRLDVATVRDHLSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLD 256 (352)
Q Consensus 188 ~~~~~iei~ii~~~g~-----------~~l~~~ei~~~l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~ 256 (352)
.+.+..-+.++.++|+ -++.+...++ +..+...+-++- +|-.||...+.+++..+..+|++
T Consensus 34 tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~K-IH~ia~~IyccG-------AGtAADte~vt~m~ss~l~Lh~l 105 (271)
T KOG0173|consen 34 TKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEK-IHFIAPNIYCCG-------AGTAADTEMVTRMISSNLELHRL 105 (271)
T ss_pred cccCcEEEEEEeCCeEEEeecccccCCCeeecchhHH-HhhcccceEEcc-------CCchhhHHHHHHHHHHHHHHHHh
Confidence 4555667777788874 1333333333 555555555554 89999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhc
Q psy2869 257 VATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREK 336 (352)
Q Consensus 257 ~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~ 336 (352)
+.++.++|-...+.|-+.++.|..+ .|..++++|+|..|||||.+.|.|+.....+.|+||||..|+++||.+||
T Consensus 106 ~t~R~~rVv~A~~mlkQ~LFrYqG~-----IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k 180 (271)
T KOG0173|consen 106 NTGRKPRVVTALRMLKQHLFRYQGH-----IGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWK 180 (271)
T ss_pred ccCCCCceeeHHHHHHHHHHHhcCc-----ccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcC
Confidence 9999999999999999999888766 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccC
Q psy2869 337 LRVPNFCGYHIAESLI 352 (352)
Q Consensus 337 ~~~~~~~~~~~~~~~~ 352 (352)
++|+.++|-.|+..||
T Consensus 181 ~dlt~eea~~Lv~eAi 196 (271)
T KOG0173|consen 181 PDLTKEEAIKLVCEAI 196 (271)
T ss_pred cccCHHHHHHHHHHHH
Confidence 9999999999998775
No 86
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.74 E-value=9.1e-18 Score=142.78 Aligned_cols=118 Identities=29% Similarity=0.289 Sum_probs=112.8
Q ss_pred ccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCC
Q psy2869 231 EGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSG 310 (352)
Q Consensus 231 ~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G 310 (352)
..++|+.+|++.+.+.++.++..|+..+++++++..+++.+++.++.+++ .||+++++|++|+|+++|+||.+||+|
T Consensus 43 ~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~iiag~~~~~~~l~~id~~g 119 (164)
T cd01901 43 WGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQ---GRPFGVNLIVAGVDEGGGNLYYIDPSG 119 (164)
T ss_pred EEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC---CCCcceEEEEEEEcCCCCEEEEECCCc
Confidence 36799999999999999999999999999999999999999999999998 899999999999998889999999999
Q ss_pred ceece-eEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 311 AYFAW-KATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 311 ~~~~~-~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
++.++ .+.++|+++..++++||+.++++++..++.+++..+
T Consensus 120 ~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (164)
T cd01901 120 PVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKA 161 (164)
T ss_pred CEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999 999999999999999999999999999998887654
No 87
>KOG0179|consensus
Probab=99.63 E-value=9.4e-16 Score=131.01 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=97.2
Q ss_pred ccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCcc--ccceeeEEEEEeCCC-CeEEEECCC
Q psy2869 233 FEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVR--PFGVSLLICGWDNKR-PYLYQCDPS 309 (352)
Q Consensus 233 ~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~R--P~g~~~ll~G~d~~g-p~ly~~dp~ 309 (352)
.+|+.||+..|...++...+.|+..+++.|++..+|++||..+ ++.| ||++..+|+|+|++| +.+|+.||.
T Consensus 74 ~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~L------Y~kRFFPYYv~~ilaGiDeeGKG~VySyDPv 147 (235)
T KOG0179|consen 74 SSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTIL------YSKRFFPYYVFNILAGIDEEGKGAVYSYDPV 147 (235)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHH------hhcccccceeeeeeecccccCceeEEeecCC
Confidence 3999999999999999999999999999999999999999999 6677 999999999999865 999999999
Q ss_pred CceeceeEEEecCCchHHHHHHHHhhcCCCCC
Q psy2869 310 GAYFAWKATAMGRNYVNGKTFLEKREKLRVPN 341 (352)
Q Consensus 310 G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~ 341 (352)
|+|.+..+.|-|+++...+++|+...+...+.
T Consensus 148 Gsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~ 179 (235)
T KOG0179|consen 148 GSYERVTCRAGGSAASMIQPFLDNQIGHKNQN 179 (235)
T ss_pred cceeeeeeecCCcchhhhhhhhhhhccCcCcc
Confidence 99999999999999999999999998877654
No 88
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1e-12 Score=112.09 Aligned_cols=183 Identities=15% Similarity=0.192 Sum_probs=147.5
Q ss_pred cEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEe----cCcEEEEEecChhhHHHHHHHHHHHHHHHHHH-hCCCCCHH
Q psy2869 20 PSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPI----TDYIGMVYSGMGPDYRLLVKKARKIAQQYKLV-YQENIPTQ 93 (352)
Q Consensus 20 tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i----~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~-~~~~i~~~ 93 (352)
=|||++.+.|.|+++|+|++.|.- .+..+|+|.. +.-+.++.+|+.+-.|.+++.+.+..+...-. .-.-+++-
T Consensus 3 YCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~ 82 (255)
T COG3484 3 YCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMY 82 (255)
T ss_pred eEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHH
Confidence 489999999999999999999988 6777888755 33456778999999999999998877632111 11234566
Q ss_pred HHHHHHHHHHHHHhhcCC------CccceEEEeEEEEeCC-CCEEEEECCCCcEEec----ceEEecCCCchhHHHHHhh
Q psy2869 94 QLVQRVAAIMQEYTQSGG------VRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAW----KATAMGRNYVNGKTFLEKR 162 (352)
Q Consensus 94 ~la~~l~~~~~~~~~~~~------~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~----~~~a~G~gs~~~~~~Le~~ 162 (352)
..+..++....+-.-+.. .--|.|++|++|.=.+ .|.||.+.|.|++.+. ++..+|. +.+.+++|++.
T Consensus 83 eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~ 161 (255)
T COG3484 83 EATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRT 161 (255)
T ss_pred HHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhh
Confidence 666777666644322211 1248999999998766 5899999999999887 4999998 57899999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCe
Q psy2869 163 YSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGF 203 (352)
Q Consensus 163 ~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~ 203 (352)
+..+++++|+.++++-++...++.+ ..+-.+++.++.+|.+
T Consensus 162 i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~ 203 (255)
T COG3484 162 ITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSF 203 (255)
T ss_pred hhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccce
Confidence 9999999999999999999999999 8888999999999874
No 89
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.46 E-value=1.4e-13 Score=118.75 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=84.4
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||..||+|.|.+.++.++++|+..+ ++.++... +.+..+...+|+.+.+|++ |+ |+||.+||.|+
T Consensus 46 ~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~~a~l~----~~l~~~~~~~~l~~~~lv~--d~--~~ly~id~~G~ 112 (172)
T PRK05456 46 GFAGSTADAFTLFERFEAKLEEHQGNL-----LRAAVELA----KDWRTDRYLRRLEAMLIVA--DK--EHSLIISGNGD 112 (172)
T ss_pred EEeccHHHHHHHHHHHHHHHHHccCcc-----HHHHHHHH----HHHHhccCCCccEEEEEEE--cC--CcEEEECCCCc
Confidence 449999999999999999999999322 34444333 3332233356888999983 54 79999999999
Q ss_pred eece--eEEEecCCchHHHHHHHHhhc-CCCCCccccccccccC
Q psy2869 312 YFAW--KATAMGRNYVNGKTFLEKREK-LRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~--~~~a~G~~s~~a~~~Le~~~~-~~~~~~~~~~~~~~~~ 352 (352)
..+. ++.|+||||..|.++||++|| ++| +|.+|+.+||
T Consensus 113 ~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~la~kai 153 (172)
T PRK05456 113 VIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEIAEKAL 153 (172)
T ss_pred EeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHHHHHHH
Confidence 9777 799999999999999999999 999 9988887764
No 90
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.45 E-value=7.9e-14 Score=119.52 Aligned_cols=104 Identities=11% Similarity=-0.019 Sum_probs=80.0
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccc-eeeEEEEEeCCCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFG-VSLLICGWDNKRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g-~~~ll~G~d~~gp~ly~~dp~G 310 (352)
.+||..+|++.|.++++.++++|+.+.++ .+++.+..++ . +..+|+. +.++++ |+ ++||.+||.|
T Consensus 45 ~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l~-~----~~~~~~l~a~~iv~--~~--~~ly~id~~G 110 (171)
T cd01913 45 GFAGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDWR-T----DRYLRRLEAMLIVA--DK--EHTLLISGNG 110 (171)
T ss_pred EecccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHHH-h----ccCcCceEEEEEEe--CC--CcEEEECCCC
Confidence 34999999999999999999999998874 3333322221 1 1345776 444443 33 4999999999
Q ss_pred ceecee--EEEecCCchHHHHHHHHhhcCC-CCCccccccccccC
Q psy2869 311 AYFAWK--ATAMGRNYVNGKTFLEKREKLR-VPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~--~~a~G~~s~~a~~~Le~~~~~~-~~~~~~~~~~~~~~ 352 (352)
+..+.+ +.++||||..|.++||.+||++ |+ +.++|.+||
T Consensus 111 ~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la~~Av 152 (171)
T cd01913 111 DVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIARKAL 152 (171)
T ss_pred CEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHHHHHH
Confidence 999995 9999999999999999999995 88 447776653
No 91
>KOG0174|consensus
Probab=99.43 E-value=4.4e-14 Score=119.44 Aligned_cols=113 Identities=11% Similarity=0.056 Sum_probs=101.2
Q ss_pred cCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCCce
Q psy2869 234 EGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAY 312 (352)
Q Consensus 234 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G~~ 312 (352)
||..||.|.+.++++++...|...++++++|...|....++...|+.. +..++|++|||+ +|.++|.+---|+.
T Consensus 65 SGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re~-----L~AgliVAGwD~~~gGqVY~iplGG~l 139 (224)
T KOG0174|consen 65 SGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNYREM-----LSAGLIVAGWDEKEGGQVYSIPLGGSL 139 (224)
T ss_pred CCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHHh-----hhcceEEeecccccCceEEEeecCceE
Confidence 999999999999999999999999999999999999999999888776 889999999997 58999999666666
Q ss_pred eceeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 313 FAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 313 ~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
.+-....-||||...++|++.+|++.|+.+|..+....|
T Consensus 140 ~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~A 178 (224)
T KOG0174|consen 140 TRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNA 178 (224)
T ss_pred eecceeeccCCceeeeeeehhhcCCCCCHHHHHHHHHHH
Confidence 666666667999999999999999999999987765443
No 92
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.35 E-value=1.2e-12 Score=112.21 Aligned_cols=104 Identities=12% Similarity=0.025 Sum_probs=77.5
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccc-eeeEEEEEeCCCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFG-VSLLICGWDNKRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g-~~~ll~G~d~~gp~ly~~dp~G 310 (352)
.+||..||++.|.+.++.++++|+.+. .+.+++.+.+ +..+ ..+|+- +.++++ |+ ++||.+||.|
T Consensus 45 ~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~----~~~~-~~~~~l~a~~iv~--~~--~~ly~i~~~G 110 (171)
T TIGR03692 45 GFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKD----WRTD-RYLRRLEAMLIVA--DK--ETSLLISGTG 110 (171)
T ss_pred EecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHH----Hhhc-ccccccEEEEEEE--cC--CCEEEEcCCC
Confidence 459999999999999999999999743 3455554443 2222 223443 555544 43 4999999999
Q ss_pred ceece--eEEEecCCchHHHHHHHHhhc-CCCCCccccccccccC
Q psy2869 311 AYFAW--KATAMGRNYVNGKTFLEKREK-LRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~--~~~a~G~~s~~a~~~Le~~~~-~~~~~~~~~~~~~~~~ 352 (352)
++.++ ++.++||||..|.++||.+|| ++|+ |-++|.+||
T Consensus 111 ~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la~~Av 152 (171)
T TIGR03692 111 DVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIAREAL 152 (171)
T ss_pred cEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHHHHHH
Confidence 99997 599999999999999999995 4444 777777653
No 93
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.6e-11 Score=101.40 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=131.2
Q ss_pred CCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEec-CcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy2869 17 AGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPIT-DYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQ 93 (352)
Q Consensus 17 ~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~-~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 93 (352)
+++|||+++-++-|++++|..++-|.. ..+..|+.+|. .+++.+++|..+|+..|.+.+..+++.|. .
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---------g 73 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---------G 73 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---------C
Confidence 689999999999999999999998877 67777776664 48999999999999999999999999874 3
Q ss_pred HHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEec--ceEEecCCCchhHHHHHhhcCC-CCCHH
Q psy2869 94 QLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAW--KATAMGRNYVNGKTFLEKRYSE-DLELD 170 (352)
Q Consensus 94 ~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~-~~s~~ 170 (352)
.|.+..-++...++....+|-+.+-++|+ | .-.++-+...|-..+. ..++||+|..++.+.....++. ++|
T Consensus 74 ~L~raavelaKdwr~Dk~lr~LEAmllVa--d--~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls-- 147 (178)
T COG5405 74 DLFRAAVELAKDWRTDKYLRKLEAMLLVA--D--KTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS-- 147 (178)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHhhheeEe--C--CCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC--
Confidence 34445555556666555677788888887 3 3557888888877665 3999999999999999888765 677
Q ss_pred HHHHHHHHHHHHhhccC-CCCCceEEEEE
Q psy2869 171 DAVHTAILTLKEGFEGQ-MTAENIEIGIA 198 (352)
Q Consensus 171 eai~l~~~~l~~~~~~d-~~~~~iei~ii 198 (352)
|.+++.++|..+.+-. .+..++.|-.+
T Consensus 148 -A~eIa~~sl~iA~eiciyTN~ni~ve~l 175 (178)
T COG5405 148 -AREIAEKSLKIAGDICIYTNHNIVVEEL 175 (178)
T ss_pred -HHHHHHHHHhhhheEEEecCCcEEEEEe
Confidence 6677888888776655 66666666554
No 94
>KOG0177|consensus
Probab=99.27 E-value=1e-11 Score=104.97 Aligned_cols=124 Identities=14% Similarity=0.086 Sum_probs=110.3
Q ss_pred hhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEE
Q psy2869 216 SNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICG 295 (352)
Q Consensus 216 ~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G 295 (352)
.++....-|.+ +|=..|+-...+.+...+..|+.++|-++|++.+|..+-..+..+- -+.+||-|++|+||
T Consensus 36 ~~ls~~~lm~~-------~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~L--Rsr~~yqV~~LvaG 106 (200)
T KOG0177|consen 36 HRLSDHILMAT-------VGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESL--RSRTPYQVNILVAG 106 (200)
T ss_pred EEeccceeeee-------ecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHH--hcCCCceEEEEEec
Confidence 34444455555 8999999999999999999999999999999999998877776654 35789999999999
Q ss_pred EeC-CCCeEEEECCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccc
Q psy2869 296 WDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIA 348 (352)
Q Consensus 296 ~d~-~gp~ly~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~ 348 (352)
+|+ +||.||++|--|+..+-++.+-|=++-...++|++.|+++|+.++|+.+-
T Consensus 107 Yd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lm 160 (200)
T KOG0177|consen 107 YDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLM 160 (200)
T ss_pred cCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHH
Confidence 996 58999999999999999999999999999999999999999999998764
No 95
>KOG0180|consensus
Probab=99.14 E-value=8.1e-11 Score=98.01 Aligned_cols=119 Identities=13% Similarity=0.070 Sum_probs=105.3
Q ss_pred ccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCC-CCeEEEEC
Q psy2869 229 LKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCD 307 (352)
Q Consensus 229 l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~-gp~ly~~d 307 (352)
+.-+.+|+..|.|.|.++++..-.+|+++.+++|-++.++.++|.++...+-- ||.+.-+++|+|++ .|.+...|
T Consensus 49 ~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lYekRfg----pYf~~PvVAGl~~~~kPfIc~mD 124 (204)
T KOG0180|consen 49 LYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLYEKRFG----PYFTEPVVAGLDDDNKPFICGMD 124 (204)
T ss_pred eEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHHHhhcC----CcccceeEeccCCCCCeeEeecc
Confidence 44577999999999999999999999999999999999999999999544322 99999999999874 69999999
Q ss_pred CCCceec-eeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 308 PSGAYFA-WKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 308 p~G~~~~-~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
..|.... ....+.|..++..++..|..|+++|.+.+-|+.--||
T Consensus 125 ~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFetisQa 169 (204)
T KOG0180|consen 125 LIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETISQA 169 (204)
T ss_pred cccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999876 5788999999999999999999999998877665443
No 96
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=98.53 E-value=3e-08 Score=55.25 Aligned_cols=14 Identities=57% Similarity=1.092 Sum_probs=13.4
Q ss_pred CCcceehhhhHHHH
Q psy2869 1 PSGKLVQIEYALAA 14 (352)
Q Consensus 1 p~Grl~QveYa~~a 14 (352)
|||||+|||||++|
T Consensus 10 p~Grl~QVEYA~~A 23 (23)
T PF10584_consen 10 PDGRLFQVEYAMKA 23 (23)
T ss_dssp TTSSBHHHHHHHHH
T ss_pred CCCeEEeeEeeecC
Confidence 89999999999987
No 97
>KOG0185|consensus
Probab=98.20 E-value=1.4e-06 Score=76.51 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=97.1
Q ss_pred cccCCccchhHHHHHHHHHHhhhh-hhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCC-CeEEEECCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRL-DVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPS 309 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~g-p~ly~~dp~ 309 (352)
+++|=.+|.|.|.+.+........ .--|..+.++.+..+|+..+..-+ +.+-|+-..++++|+|++| |.|=++|--
T Consensus 85 G~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rR--sKmnPlwntlvVgGv~~~g~~~lg~V~~~ 162 (256)
T KOG0185|consen 85 GASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARR--SKMNPLWNTLVVGGVDNTGEPFLGYVDLL 162 (256)
T ss_pred ecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhh--hccCchhhheeEeeecCCCCeeEEEEeec
Confidence 669999999999999988766633 233489999999999999995544 3345999999999999855 999999999
Q ss_pred CceeceeEEEecCCchHHHHHHHHhhc---CCCCCccccccccc
Q psy2869 310 GAYFAWKATAMGRNYVNGKTFLEKREK---LRVPNFCGYHIAES 350 (352)
Q Consensus 310 G~~~~~~~~a~G~~s~~a~~~Le~~~~---~~~~~~~~~~~~~~ 350 (352)
|...+-+..|+|-|...|.++|++.+. ++++.++|..+.|.
T Consensus 163 G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~ 206 (256)
T KOG0185|consen 163 GVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEK 206 (256)
T ss_pred cccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHH
Confidence 999999999999999999999999888 33556666665543
No 98
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.25 E-value=0.34 Score=42.10 Aligned_cols=151 Identities=16% Similarity=0.207 Sum_probs=90.0
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcCccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQR 98 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ 98 (352)
+.+||.-+++|.|+|.|+|. +++-|.-.....|-+.+ ..|.=-+=+.|.+.
T Consensus 2 SLII~y~GknGaViaGDkR~--------------------I~F~G~~~~re~LEeeL---------YsG~IktdeEL~kk 52 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN--------------------IAFRGDEEKREKLEEEL---------YSGKIKTDEELLKK 52 (194)
T ss_pred eEEEEEecCCCcEEecccee--------------------eeecCCHHHHHHHHHHH---------hCCccCCHHHHHHH
Confidence 45899999999999999972 46667766655444433 12222233444443
Q ss_pred HHHHH---HHHhhcCCCccceEEEeEEE------EeCCCCEEEEE-------CCCCcEEecceEEecCCC----------
Q psy2869 99 VAAIM---QEYTQSGGVRPFGVSLLICG------WDNKRPYLYQC-------DPSGAYFAWKATAMGRNY---------- 152 (352)
Q Consensus 99 l~~~~---~~~~~~~~~rP~~v~~ivaG------~D~~gp~Ly~i-------Dp~G~~~~~~~~a~G~gs---------- 152 (352)
...+= +..-.....+-.+- ++++- .|...-++|.+ |-.|.-.. -...|.++
T Consensus 53 A~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~--~~~~g~~sgiIVfGNk~~ 129 (194)
T PF09894_consen 53 AEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEIT--NKSRGEGSGIIVFGNKFT 129 (194)
T ss_pred HHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEE--EEecCCceeEEEECCHHH
Confidence 32211 00000001111222 33332 23323455543 33333222 23344444
Q ss_pred -chhHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCC
Q psy2869 153 -VNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADEN 201 (352)
Q Consensus 153 -~~~~~~Le~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~ 201 (352)
+.+...|.++|++.|+++++.++..++|..+.... ..+..+++...++.
T Consensus 130 K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 130 KEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 66788899999999999999999999999987777 78889999888654
No 99
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.057 Score=45.35 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=70.7
Q ss_pred ccccccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECC
Q psy2869 229 LKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDP 308 (352)
Q Consensus 229 l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp 308 (352)
+-++|+|.+||++.|.+++...++.|.- .|.+..-++...++-.-..|-+=.-++++ |+ -++|-+--
T Consensus 46 vlaGFAGstADaftLfe~fe~kle~~~g---------~L~raavelaKdwr~Dk~lr~LEAmllVa--d~--~~il~isG 112 (178)
T COG5405 46 VLAGFAGSTADAFTLFERFEAKLEQYQG---------DLFRAAVELAKDWRTDKYLRKLEAMLLVA--DK--THILIITG 112 (178)
T ss_pred EEEEecccchhHHHHHHHHHHHHHHccC---------cHHHHHHHHHHhhhhhhHHHHHhhheeEe--CC--CcEEEEec
Confidence 4578999999999999999998887763 23333333333333222334444444444 54 46777778
Q ss_pred CCceece--eEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 309 SGAYFAW--KATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 309 ~G~~~~~--~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
.|.+.+. ...|||||...|..----.++ +++..|.++|+.+
T Consensus 113 ~gdV~epe~~~~aIGSGgnyAl~AarAl~~--~~~lsA~eIa~~s 155 (178)
T COG5405 113 NGDVIEPEDDIIAIGSGGNYALSAARALME--NTELSAREIAEKS 155 (178)
T ss_pred CcceecCCCCeEEEcCCchHHHHHHHHHHh--ccCCCHHHHHHHH
Confidence 8887763 489999998877765544443 3477777777765
No 100
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.46 E-value=1.6 Score=39.38 Aligned_cols=152 Identities=16% Similarity=0.230 Sum_probs=90.7
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcCccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQR 98 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ 98 (352)
+.+|+.-+++|.|+|.|+|. +.+-|.-.|-+.|-+.+ ..|.--+-+.|++.
T Consensus 2 tLviay~gknGaviaGDrR~--------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r~ 52 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE--------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELARK 52 (293)
T ss_pred eEEEEEecCCCcEEeccceE--------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHHH
Confidence 45799999999999999872 45566666655544433 23444455556555
Q ss_pred HHHHHHHHhhc---CCCccceEEEeEEEEeCCC------CEEEEE-------CCCCcEEecceEEecCCC----------
Q psy2869 99 VAAIMQEYTQS---GGVRPFGVSLLICGWDNKR------PYLYQC-------DPSGAYFAWKATAMGRNY---------- 152 (352)
Q Consensus 99 l~~~~~~~~~~---~~~rP~~v~~ivaG~D~~g------p~Ly~i-------Dp~G~~~~~~~~a~G~gs---------- 152 (352)
..++--..+.. ...|-..-+++++-+..-+ -++|.+ +-.|+-.. ....|.|+
T Consensus 53 aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vt--s~~~g~g~aiIv~Gnk~~ 130 (293)
T COG4079 53 AEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVT--STSQGKGSAIIVFGNKFT 130 (293)
T ss_pred HHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeE--eeecCCCceEEEECcHHH
Confidence 54432111100 0112222334444443322 234432 22222111 22223322
Q ss_pred -chhHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCC
Q psy2869 153 -VNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADEN 201 (352)
Q Consensus 153 -~~~~~~Le~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~ 201 (352)
+.+..+|.++|.+.++++++.+....+|..+...- ..+..++++.++++
T Consensus 131 Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 131 KEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 45677899999999999999999999999988666 88889999998765
No 101
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.61 E-value=0.99 Score=39.47 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=79.4
Q ss_pred ccCCccchhHHHHHHHHHHh--hhhhhcCCCCCHHHHHHHHHHHHHHhh-hcCC-----ccccceeeEEEEEeCC-CCeE
Q psy2869 233 FEGQMTAENIEIGIADENGF--RRLDVATENIPTQQLVQRVAAIMQEYT-QSGG-----VRPFGVSLLICGWDNK-RPYL 303 (352)
Q Consensus 233 ~aG~~aD~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~ls~~~q~~t-~~~~-----~RP~g~~~ll~G~d~~-gp~l 303 (352)
.+|--|=.|.+++.+....+ ...... ..+++-+.+..+++..-.-- +... .--|-|++|++|.=.. -|.|
T Consensus 49 taGNLA~tQaV~~ll~e~~~~d~~~~L~-n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~L 127 (255)
T COG3484 49 TAGNLAITQAVLHLLDERIQRDDGDSLL-NIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRL 127 (255)
T ss_pred ecCccHHHHHHHHHHHHHhhccchhhhh-cchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCcee
Confidence 47777778888888776653 111111 25566677777776653321 1111 1258899999997543 4899
Q ss_pred EEECCCCceec----eeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 304 YQCDPSGAYFA----WKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 304 y~~dp~G~~~~----~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
|.+-|.|++.+ ..+.-+|.. ..-+++|++.+..+++-+++-..|.-+
T Consensus 128 y~IYpqGNFIqaT~etpf~QiGEt-KYGKPildR~i~~~~pLeea~kcaLvS 178 (255)
T COG3484 128 YLIYPQGNFIQATPETPFLQIGET-KYGKPILDRTITYDTPLEEAAKCALVS 178 (255)
T ss_pred EEEccCCCeeecCCCCceeEcccc-ccCchhhhhhhhccCCHHHHhhheEEe
Confidence 99999999986 356667754 456789999999999888876666543
No 102
>KOG3361|consensus
Probab=77.36 E-value=3.5 Score=33.61 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=40.4
Q ss_pred EEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHH
Q psy2869 132 YQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHT 175 (352)
Q Consensus 132 y~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 175 (352)
..+|-+|.+...++-.-|.||..+-+-+-..|-+.+++||+.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 46888999999999999999999999999999999999999753
No 103
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=56.07 E-value=17 Score=24.25 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=28.9
Q ss_pred EEECCCCceeceeEEEecCCchHHHHHHHHhh
Q psy2869 304 YQCDPSGAYFAWKATAMGRNYVNGKTFLEKRE 335 (352)
Q Consensus 304 y~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~ 335 (352)
|.++|+|.+...--.-.|+++..+...||+..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 78899999998888889999999999999865
No 104
>PRK08452 flagellar protein FlaG; Provisional
Probab=46.40 E-value=76 Score=25.84 Aligned_cols=35 Identities=9% Similarity=0.291 Sum_probs=27.4
Q ss_pred CCceEEEEEeCC-C--eEEcChhHHHHHHhhCccchHH
Q psy2869 190 AENIEIGIADEN-G--FRRLDVATVRDHLSNIPQSVHT 224 (352)
Q Consensus 190 ~~~iei~ii~~~-g--~~~l~~~ei~~~l~~i~~~~~~ 224 (352)
.+.+-|.|++++ | +|.+||+++-++.+++.+-.|+
T Consensus 81 ~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~e~~Gl 118 (124)
T PRK08452 81 IKGLVVSVKEANGGKVIREIPSKEAIELMEYMRDVIGI 118 (124)
T ss_pred CCcEEEEEEECCCCceeeeCCCHHHHHHHHHHHHhhhh
Confidence 446788888765 4 8999999999999988765444
No 105
>PRK07738 flagellar protein FlaG; Provisional
Probab=40.96 E-value=89 Score=25.14 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=27.7
Q ss_pred CCceEEEEEeCC-C--eEEcChhHHHHHHhhCccchHH
Q psy2869 190 AENIEIGIADEN-G--FRRLDVATVRDHLSNIPQSVHT 224 (352)
Q Consensus 190 ~~~iei~ii~~~-g--~~~l~~~ei~~~l~~i~~~~~~ 224 (352)
.+.+-|.|++++ | +|.++++++-+++.++.+-.|+
T Consensus 74 t~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~e~~Gl 111 (117)
T PRK07738 74 LNEYYVQVVDERTNEVIREIPPKKLLDMYAAMMEFVGL 111 (117)
T ss_pred CCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHHHHhcc
Confidence 457888888765 4 8999999999999988765443
No 106
>PRK09732 hypothetical protein; Provisional
Probab=40.01 E-value=85 Score=25.88 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC
Q psy2869 165 EDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG 202 (352)
Q Consensus 165 ~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g 202 (352)
+.||++.|.+++..++..+.+. +.++.|+|+|..|
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~---g~~v~iaVvD~~G 39 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN---NWSVSIAVADDGG 39 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh---CCCEEEEEEcCCC
Confidence 4699999999999999987765 5689999999999
No 107
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=36.27 E-value=1.1e+02 Score=25.55 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC
Q psy2869 164 SEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG 202 (352)
Q Consensus 164 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g 202 (352)
.+.+|+++|.+++..++.++.+. +..+.|.++|..|
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~---g~~VtvaVVD~~G 40 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL---GVPVTVAVVDAGG 40 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh---CCceEEEEECCCC
Confidence 45789999999999999886553 7899999999999
No 108
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=35.00 E-value=90 Score=25.23 Aligned_cols=53 Identities=6% Similarity=0.122 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhccC---------CCCCceEEEEEeCCC---eEEcChhHHHHHHhhCccchHH
Q psy2869 172 AVHTAILTLKEGFEGQ---------MTAENIEIGIADENG---FRRLDVATVRDHLSNIPQSVHT 224 (352)
Q Consensus 172 ai~l~~~~l~~~~~~d---------~~~~~iei~ii~~~g---~~~l~~~ei~~~l~~i~~~~~~ 224 (352)
.++++.+=|...+++. ...+.+-|.|++++. +|.++|+++-++.+++....++
T Consensus 50 ~L~~~v~~ink~~k~~nt~l~F~~dd~lg~~vVkI~d~~TgeVIRqIPpee~L~l~~r~~d~~gi 114 (120)
T COG1334 50 KLALIVEDINKLLKSLNTHLNFSYDDELGELVVKIIDKDTGEVIRQIPPEEALELAARMRDVIGI 114 (120)
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEecccCcEEEEEEECCCCcchhhCChHHHHHHHHHHHHhhhh
Confidence 4555555555544443 234466778887764 8999999999999988754443
No 109
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=34.37 E-value=20 Score=23.64 Aligned_cols=33 Identities=9% Similarity=0.284 Sum_probs=24.3
Q ss_pred EecCCCchhHHHHHhhc-CCCCCHHHHHHHHHHH
Q psy2869 147 AMGRNYVNGKTFLEKRY-SEDLELDDAVHTAILT 179 (352)
Q Consensus 147 a~G~gs~~~~~~Le~~~-~~~~s~~eai~l~~~~ 179 (352)
+.|.....+...+.+.. .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 35777788888888877 8899999988877653
No 110
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=32.04 E-value=71 Score=25.89 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC
Q psy2869 165 EDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG 202 (352)
Q Consensus 165 ~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g 202 (352)
|.+|+++|.+++..++..+.++. .++-|+||+..|
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g---~~v~iaVvd~~G 35 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERG---LPVSIAVVDAGG 35 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT------EEEEEETTS
T ss_pred CCcCHHHHHHHHHHHHHHHHHhC---CCeEEEEEECCC
Confidence 35789999999999999988763 458899999998
No 111
>PRK08868 flagellar protein FlaG; Provisional
Probab=31.74 E-value=1.8e+02 Score=24.28 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhccC-----CCCCceEEEEEeCC-C--eEEcChhHHHHHHhhCc
Q psy2869 169 LDDAVHTAILTLKEGFEGQ-----MTAENIEIGIADEN-G--FRRLDVATVRDHLSNIP 219 (352)
Q Consensus 169 ~~eai~l~~~~l~~~~~~d-----~~~~~iei~ii~~~-g--~~~l~~~ei~~~l~~i~ 219 (352)
++++++-+-+.+....... -..+.+-|.|++++ | +|.++++|+-++.+++.
T Consensus 73 l~~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~ 131 (144)
T PRK08868 73 LEKMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLA 131 (144)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHHH
Confidence 3344555555554432221 23447778888755 4 89999999999988876
No 112
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=31.45 E-value=70 Score=24.92 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=26.1
Q ss_pred CCceEEEEEeCC-C--eEEcChhHHHHHHhhCccchHH
Q psy2869 190 AENIEIGIADEN-G--FRRLDVATVRDHLSNIPQSVHT 224 (352)
Q Consensus 190 ~~~iei~ii~~~-g--~~~l~~~ei~~~l~~i~~~~~~ 224 (352)
.+.+.|.|++++ | +|.++++++-++..++..-.|+
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e~~Gl 102 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKRLRELVGL 102 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHHHHhce
Confidence 456788888865 5 7999999999999888765543
No 113
>KOG2449|consensus
Probab=28.26 E-value=1.6e+02 Score=24.59 Aligned_cols=76 Identities=14% Similarity=0.039 Sum_probs=56.5
Q ss_pred CCccchhHHHHHHHHHHhhhhhhcCCCCCHHH--HHHHHHHHHHHhhhcCCccccceeeEEEEEeC---CCCeEEEECCC
Q psy2869 235 GQMTAENIEIGIADENGFRRLDVATENIPTQQ--LVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN---KRPYLYQCDPS 309 (352)
Q Consensus 235 G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~--l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~---~gp~ly~~dp~ 309 (352)
-|+.|++.|...+...++.|+.+-|+.+.... -+..|...+|.- .---|+..-+-||.+ -||.+..+-|.
T Consensus 3 v~vg~aksW~~~lve~ak~l~v~~g~kp~tD~~a~~~ri~~liqS~-----~~~~~r~~yl~~ya~~~f~~~tiLsvtP~ 77 (157)
T KOG2449|consen 3 VMVGAAKSWHPTLVEDAKVLKVNAGEKPQTDKYAPKVRIDKLIQSE-----DPLDGRFIYLPGYAEGNFVGPTILSVTPN 77 (157)
T ss_pred eEechhhhhhHHHHHhhhheEeccCCCCCccchhHHHHHHHHhcCc-----CccCCceEEeeccccCCcccceEEEecCC
Confidence 46789999999999999999999998886554 445777777652 223566677788865 36888888887
Q ss_pred Cceece
Q psy2869 310 GAYFAW 315 (352)
Q Consensus 310 G~~~~~ 315 (352)
=++...
T Consensus 78 ms~yke 83 (157)
T KOG2449|consen 78 MSCYKE 83 (157)
T ss_pred cceeHh
Confidence 776654
No 114
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=27.52 E-value=2.4e+02 Score=23.90 Aligned_cols=91 Identities=13% Similarity=0.204 Sum_probs=51.1
Q ss_pred cChhHHHHHHhhCccchHHHHhhccccccCCccchhHHHHHHHHHHhhh---------hhhcCCCCCHHHHHHHHHHHHH
Q psy2869 206 LDVATVRDHLSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRR---------LDVATENIPTQQLVQRVAAIMQ 276 (352)
Q Consensus 206 l~~~ei~~~l~~i~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~---------~~~~~~~~~~~~l~~~ls~~~q 276 (352)
...+.++++.+++...-..+..-++..-.|-.+|++.+.+.=......+ ....|+..+.+.+|+.|.....
T Consensus 15 ~~~~g~~eY~KR~~~~~~leliei~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~ 94 (155)
T COG1576 15 YVKDGIAEYLKRFPRYLKLELIEIPEEKRGKNASAELIKKKEGEAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRD 94 (155)
T ss_pred HHHHHHHHHHHHhccccCceEEecCCccCccccCHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHh
Confidence 3455566666666666666666666665666665333222211111111 1235788899999988877652
Q ss_pred HhhhcCCccccceeeEEEEEeCCCCeEE
Q psy2869 277 EYTQSGGVRPFGVSLLICGWDNKRPYLY 304 (352)
Q Consensus 277 ~~t~~~~~RP~g~~~ll~G~d~~gp~ly 304 (352)
.. --+.++|||-|.-.|.++
T Consensus 95 ~G--------~~i~f~IGG~~Gl~~~~~ 114 (155)
T COG1576 95 DG--------RDISFLIGGADGLSEAVK 114 (155)
T ss_pred cC--------CeEEEEEeCcccCCHHHH
Confidence 22 127889999774334333
No 115
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=27.32 E-value=2.4e+02 Score=21.24 Aligned_cols=49 Identities=8% Similarity=0.115 Sum_probs=37.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC--eEEcChhHHHHHHh
Q psy2869 163 YSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG--FRRLDVATVRDHLS 216 (352)
Q Consensus 163 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g--~~~l~~~ei~~~l~ 216 (352)
..+..|.++..+.+.....- .....|.+.|++++| +.+-+.+|+++=+.
T Consensus 16 ~d~~~s~e~L~~~v~~~c~~-----~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~r 66 (83)
T cd06404 16 IDPSISLEELCNEVRDMCRF-----HNDQPFTLKWIDEEGDPCTISSQMELEEAFR 66 (83)
T ss_pred cCCCcCHHHHHHHHHHHhCC-----CCCCcEEEEEECCCCCceeecCHHHHHHHHH
Confidence 34567888887777776643 345689999999998 89999999987443
No 116
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=26.22 E-value=99 Score=24.13 Aligned_cols=29 Identities=3% Similarity=-0.146 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHhhhhhhcCC-CCCHHHHH
Q psy2869 240 ENIEIGIADENGFRRLDVATE-NIPTQQLV 268 (352)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~ 268 (352)
|..+++++..++..|++.+++ ++|++.|-
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L~ 78 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDLK 78 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 556889999999999999998 77766553
No 117
>PF14191 YodL: YodL-like
Probab=25.14 E-value=78 Score=24.85 Aligned_cols=62 Identities=15% Similarity=0.046 Sum_probs=34.3
Q ss_pred HhhhhhhcCCCCC-HHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCce
Q psy2869 251 GFRRLDVATENIP-TQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAY 312 (352)
Q Consensus 251 ~~~~~~~~~~~~~-~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~~ 312 (352)
..+|+..|.-++. .+.|-..-....-..-.....|++++|=+|.=.+..+-+-|++|+.|..
T Consensus 35 ~~~Y~~VY~~~l~~~~~Le~iy~~FN~~~P~df~GhsLSvSDVV~l~~~g~~~~yYvDs~GF~ 97 (103)
T PF14191_consen 35 PENYRLVYDGELDHTETLEDIYERFNVDHPEDFKGHSLSVSDVVELYDGGKSSFYYVDSFGFK 97 (103)
T ss_pred hHHceEEEEEecCCCCCHHHHHHHhCcCCCCCCCCCccChheEEEEEcCCceEEEEECCCCCe
Confidence 3457777766666 3333222111111111112346889988877455455788999977753
No 118
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=24.07 E-value=1.6e+02 Score=25.07 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhcC--CCccce----EEEeEEEEeCCCCEEEEECCCCcE
Q psy2869 93 QQLVQRVAAIMQEYTQSG--GVRPFG----VSLLICGWDNKRPYLYQCDPSGAY 140 (352)
Q Consensus 93 ~~la~~l~~~~~~~~~~~--~~rP~~----v~~ivaG~D~~gp~Ly~iDp~G~~ 140 (352)
..-++.++++|.+|-=-+ -.+|-. =..+|.|+|.++-.|...||.+.-
T Consensus 95 ~~t~e~~~~LL~~yGPLwv~~~~P~~~~~~H~~ViTGI~~dg~~i~~~DP~~gP 148 (166)
T PF12385_consen 95 SYTAEGLANLLREYGPLWVAWEAPGDSWVAHASVITGIDGDGDSIHVHDPEQGP 148 (166)
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCcceeeEEEEEeecCCCCeEEecCcccCC
Confidence 445566666776554110 112321 236778999888889999997753
No 119
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=23.22 E-value=1.1e+02 Score=21.84 Aligned_cols=34 Identities=3% Similarity=0.036 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHH
Q psy2869 244 IGIADENGFRRLDVATENIPTQQLVQRVAAIMQE 277 (352)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~ 277 (352)
+++++..........|++++.+.+|+.+.--...
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~~~ 36 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISVEE 36 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-HHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccHHH
Confidence 3455556667778899999999999988644433
No 120
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=22.69 E-value=86 Score=19.39 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=12.6
Q ss_pred eCCCCeEEEECCCCceeceeEEEec
Q psy2869 297 DNKRPYLYQCDPSGAYFAWKATAMG 321 (352)
Q Consensus 297 d~~gp~ly~~dp~G~~~~~~~~a~G 321 (352)
|..|--+=.+||.|....|.+-+.|
T Consensus 2 D~~G~l~~~~d~~G~~~~y~YD~~g 26 (38)
T PF05593_consen 2 DANGRLTSVTDPDGRTTRYTYDAAG 26 (38)
T ss_pred CCCCCEEEEEcCCCCEEEEEECCCC
Confidence 3333334444566666555555554
No 121
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=20.73 E-value=2.6e+02 Score=22.12 Aligned_cols=48 Identities=13% Similarity=-0.044 Sum_probs=30.0
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhc-C--------C-CCCHHHHHHHHHHHHHHhh
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVA-T--------E-NIPTQQLVQRVAAIMQEYT 279 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~-~--------~-~~~~~~l~~~ls~~~q~~t 279 (352)
.-.|++-|...|.+.++.....+-..+ + . .+|+|.+|..|.+.+...-
T Consensus 41 ~~~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 41 DEDGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TTTSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 347888888888887775433222111 1 0 2899999999999987766
No 122
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=20.38 E-value=2.9e+02 Score=21.22 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=35.8
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEcChhHHHHHHhh
Q psy2869 154 NGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSN 217 (352)
Q Consensus 154 ~~~~~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g~~~l~~~ei~~~l~~ 217 (352)
.+..++++.+++.++.+|+++...+.|....-.. ++.++..++.+++..+++-
T Consensus 23 i~~~ll~~~i~~~~~~~~~~~~fk~~l~~~sv~r-----------pp~~~~iFs~~~~~~i~~y 75 (101)
T PF14769_consen 23 ILKELLEKNIEKGMSLEDSFKYFKELLLRHSVQR-----------PPFSIGIFSVDQVKAIIDY 75 (101)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHhccCC-----------CCcccCcCCHHHHHHHHHH
Confidence 3455666566689999999999999985533221 2334667788888775543
Done!