Query psy2869
Match_columns 352
No_of_seqs 285 out of 2328
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 18:58:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 100.0 7.7E-56 2.6E-60 404.0 26.2 219 1-219 12-240 (243)
2 1iru_B 20S proteasome; cell cy 100.0 1.1E-55 3.9E-60 400.5 27.0 218 1-218 14-232 (233)
3 1yar_A Proteasome alpha subuni 100.0 5.3E-55 1.8E-59 396.1 26.3 214 1-214 17-232 (233)
4 1ryp_C 20S proteasome; multica 100.0 2E-54 6.9E-59 394.9 28.8 219 1-219 14-242 (244)
5 3h4p_A Proteasome subunit alph 100.0 2.8E-55 9.7E-60 404.0 21.1 218 1-219 21-241 (264)
6 1iru_C 20S proteasome; cell cy 100.0 4E-54 1.4E-58 396.4 27.9 219 1-219 14-241 (261)
7 1ryp_E 20S proteasome; multica 100.0 1.7E-54 5.7E-59 395.0 24.7 220 1-220 9-237 (242)
8 1ryp_D 20S proteasome; multica 100.0 5.9E-54 2E-58 391.1 27.9 217 1-219 11-235 (241)
9 1iru_A 20S proteasome; cell cy 100.0 6.7E-54 2.3E-58 391.9 27.7 219 1-219 18-243 (246)
10 1iru_E 20S proteasome; cell cy 100.0 3.7E-54 1.3E-58 392.4 25.6 218 1-218 17-241 (241)
11 1iru_D 20S proteasome; cell cy 100.0 4.2E-54 1.4E-58 393.5 24.7 219 1-221 12-235 (248)
12 1j2p_A Alpha-ring, proteasome 100.0 1.3E-53 4.4E-58 389.9 27.9 221 1-222 17-240 (246)
13 1iru_G 20S proteasome; cell cy 100.0 4.5E-54 1.6E-58 394.5 24.2 219 1-219 16-240 (254)
14 1iru_F 20S proteasome; cell cy 100.0 1.1E-53 3.8E-58 393.6 25.4 218 1-219 15-237 (263)
15 1ryp_G 20S proteasome; multica 100.0 2.3E-53 8E-58 387.6 26.9 218 1-218 13-238 (244)
16 1ryp_F 20S proteasome; multica 100.0 9.9E-54 3.4E-58 387.7 23.1 212 1-214 14-232 (233)
17 1ryp_B 20S proteasome; multica 100.0 8.6E-53 2.9E-57 385.4 28.1 218 1-218 14-250 (250)
18 3nzj_F Proteasome component C1 100.0 8E-53 2.7E-57 391.1 25.7 213 1-213 17-237 (288)
19 1q5q_A Proteasome alpha-type s 100.0 2.2E-48 7.4E-53 357.4 21.8 217 1-225 9-242 (259)
20 3mi0_A Proteasome subunit alph 100.0 4.6E-47 1.6E-51 345.6 26.3 205 7-219 16-238 (248)
21 3h4p_a Proteasome subunit beta 100.0 3.6E-46 1.2E-50 334.9 22.0 201 18-222 1-206 (219)
22 1yar_H Proteasome beta subunit 100.0 9.3E-46 3.2E-50 331.8 24.4 202 13-219 3-208 (217)
23 1j2q_H Proteasome beta subunit 100.0 2.8E-45 9.6E-50 325.2 25.3 197 19-219 1-201 (202)
24 3nzj_K Proteasome component PR 100.0 6.4E-45 2.2E-49 337.8 21.2 207 10-220 67-277 (287)
25 1q5r_H Proteasome beta-type su 100.0 1.6E-44 5.6E-49 336.2 23.5 211 11-222 58-286 (294)
26 1iru_L 20S proteasome; cell cy 100.0 1.7E-44 5.7E-49 320.7 21.9 198 19-220 1-201 (204)
27 1iru_N 20S proteasome; cell cy 100.0 7.7E-45 2.6E-49 326.3 17.3 201 12-214 2-208 (219)
28 1ryp_L 20S proteasome; multica 100.0 7E-44 2.4E-48 318.5 21.6 198 19-220 1-202 (212)
29 2jay_A Proteasome; hydrolase; 100.0 5.7E-44 2E-48 332.3 21.5 213 8-222 48-278 (291)
30 1q5q_H Proteasome beta-type su 100.0 4.4E-43 1.5E-47 318.1 23.2 201 19-220 1-219 (235)
31 1iru_H 20S proteasome; cell cy 100.0 1.9E-43 6.3E-48 314.2 20.1 194 19-217 1-200 (205)
32 1ryp_N 20S proteasome; multica 100.0 5E-44 1.7E-48 324.0 16.2 201 12-214 2-217 (233)
33 3unf_H Proteasome subunit beta 100.0 5.5E-43 1.9E-47 316.6 21.7 190 19-213 1-193 (234)
34 3nzj_H Proteasome component PU 100.0 9.8E-43 3.3E-47 319.4 23.5 195 12-211 23-221 (261)
35 1ryp_K 20S proteasome; multica 100.0 1.1E-42 3.8E-47 307.5 22.6 188 19-208 2-194 (198)
36 1ryp_H 20S proteasome; multica 100.0 9.6E-43 3.3E-47 309.6 21.6 189 11-205 2-194 (205)
37 1iru_M 20S proteasome; cell cy 100.0 3E-42 1E-46 308.2 23.5 187 15-205 6-205 (213)
38 1g0u_M Proteasome component PR 100.0 2.7E-43 9.1E-48 324.9 15.6 205 8-214 31-250 (266)
39 1ryp_I 20S proteasome; multica 100.0 1.6E-41 5.5E-46 305.2 23.5 187 19-210 1-191 (222)
40 1ryp_M 20S proteasome; multica 100.0 1E-41 3.6E-46 306.5 22.0 188 14-205 5-214 (222)
41 1iru_J 20S proteasome; cell cy 100.0 2.9E-41 1E-45 300.0 22.6 186 15-204 5-196 (205)
42 1ryp_J 20S proteasome; multica 100.0 5.7E-41 2E-45 297.9 24.5 185 15-204 5-195 (204)
43 1iru_K 20S proteasome; cell cy 100.0 4.7E-41 1.6E-45 297.8 22.5 188 19-208 2-193 (201)
44 1iru_I 20S proteasome; cell cy 100.0 7.6E-41 2.6E-45 303.0 23.1 188 19-211 1-191 (234)
45 3unf_N Proteasome subunit beta 100.0 1.6E-41 5.3E-46 300.4 17.5 190 19-215 1-197 (199)
46 2z3b_A ATP-dependent protease 100.0 5.6E-34 1.9E-38 247.9 17.4 168 16-199 3-180 (180)
47 1m4y_A ATP-dependent protease 100.0 1.5E-33 5.1E-38 243.3 18.0 164 19-198 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 3.3E-33 1.1E-37 241.8 17.8 165 19-199 1-173 (174)
49 3h4p_A Proteasome subunit alph 99.9 1.1E-27 3.7E-32 220.1 4.1 121 232-352 81-201 (264)
50 3nzj_F Proteasome component C1 99.9 5E-27 1.7E-31 217.8 7.8 121 232-352 77-200 (288)
51 1ryp_F 20S proteasome; multica 99.9 6.1E-27 2.1E-31 211.7 7.9 120 232-351 72-195 (233)
52 1ryp_A 20S proteasome; multica 99.9 5.1E-27 1.7E-31 213.5 6.7 121 232-352 73-201 (243)
53 1iru_D 20S proteasome; cell cy 99.9 6.5E-27 2.2E-31 213.4 6.4 121 232-352 72-195 (248)
54 1yar_A Proteasome alpha subuni 99.9 1.7E-26 5.7E-31 208.8 8.6 121 232-352 77-197 (233)
55 1iru_B 20S proteasome; cell cy 99.9 1.9E-26 6.5E-31 208.4 8.5 121 232-352 74-194 (233)
56 1iru_F 20S proteasome; cell cy 99.9 2.2E-26 7.5E-31 211.5 7.8 121 232-352 73-195 (263)
57 1ryp_C 20S proteasome; multica 99.9 3.3E-26 1.1E-30 208.3 8.4 121 232-352 75-196 (244)
58 1ryp_G 20S proteasome; multica 99.9 3.5E-26 1.2E-30 208.0 8.3 121 232-352 73-196 (244)
59 3mi0_A Proteasome subunit alph 99.9 1.6E-26 5.3E-31 210.2 4.8 153 192-352 28-188 (248)
60 1ryp_D 20S proteasome; multica 99.9 5.4E-26 1.9E-30 206.5 8.0 121 232-352 72-197 (241)
61 1iru_G 20S proteasome; cell cy 99.9 4E-26 1.4E-30 208.8 7.0 121 232-352 76-197 (254)
62 1iru_A 20S proteasome; cell cy 99.9 7.3E-26 2.5E-30 206.2 8.5 121 232-352 79-202 (246)
63 1j2p_A Alpha-ring, proteasome 99.9 7.9E-26 2.7E-30 206.0 8.5 120 232-352 77-196 (246)
64 1ryp_E 20S proteasome; multica 99.9 5.7E-26 1.9E-30 206.5 6.8 121 232-352 69-196 (242)
65 1iru_C 20S proteasome; cell cy 99.9 1.2E-25 4E-30 206.6 7.8 121 232-352 75-197 (261)
66 1iru_E 20S proteasome; cell cy 99.9 7.7E-26 2.6E-30 205.5 6.0 121 232-352 77-202 (241)
67 1j2q_H Proteasome beta subunit 99.9 2.4E-25 8.2E-30 196.9 8.0 117 232-352 44-161 (202)
68 1yar_H Proteasome beta subunit 99.9 6.4E-25 2.2E-29 196.3 8.0 116 232-352 52-167 (217)
69 1ryp_K 20S proteasome; multica 99.9 5.5E-25 1.9E-29 194.0 7.5 118 232-351 45-164 (198)
70 1iru_L 20S proteasome; cell cy 99.9 7.3E-25 2.5E-29 194.1 7.7 117 232-352 44-160 (204)
71 3h4p_a Proteasome subunit beta 99.9 6.7E-25 2.3E-29 196.4 7.5 117 232-352 45-163 (219)
72 1ryp_B 20S proteasome; multica 99.9 8.1E-25 2.8E-29 199.7 8.2 121 232-352 74-196 (250)
73 1q5q_H Proteasome beta-type su 99.9 6.2E-25 2.1E-29 198.7 7.3 120 232-352 44-171 (235)
74 1ryp_L 20S proteasome; multica 99.9 1.3E-24 4.5E-29 193.6 8.1 117 232-352 44-161 (212)
75 3unf_H Proteasome subunit beta 99.9 1.3E-24 4.5E-29 196.1 7.8 116 232-352 44-159 (234)
76 1iru_H 20S proteasome; cell cy 99.9 1.3E-24 4.4E-29 192.6 7.5 116 232-352 44-160 (205)
77 1ryp_I 20S proteasome; multica 99.9 2.4E-24 8.3E-29 193.2 7.9 116 232-352 44-159 (222)
78 1iru_N 20S proteasome; cell cy 99.9 1.3E-24 4.3E-29 194.6 6.0 119 232-352 52-173 (219)
79 1q5q_A Proteasome alpha-type s 99.9 1.1E-24 3.9E-29 199.6 4.0 153 192-352 28-188 (259)
80 1iru_M 20S proteasome; cell cy 99.9 6E-24 2.1E-28 189.4 8.0 117 232-352 53-179 (213)
81 3nzj_H Proteasome component PU 99.9 9.7E-24 3.3E-28 193.2 7.9 116 232-352 73-188 (261)
82 1q5r_H Proteasome beta-type su 99.9 8.7E-24 3E-28 196.5 7.4 120 232-352 109-236 (294)
83 1iru_I 20S proteasome; cell cy 99.9 1.4E-23 4.9E-28 189.5 8.2 116 232-352 44-159 (234)
84 3nzj_K Proteasome component PR 99.9 1E-23 3.4E-28 195.5 7.1 117 232-352 119-236 (287)
85 1ryp_N 20S proteasome; multica 99.9 5.9E-24 2E-28 192.1 4.7 119 232-352 52-181 (233)
86 1ryp_J 20S proteasome; multica 99.9 1.8E-23 6.2E-28 185.1 7.7 117 232-352 51-170 (204)
87 1ryp_H 20S proteasome; multica 99.9 1.7E-23 5.7E-28 185.5 7.4 115 232-352 53-168 (205)
88 1iru_J 20S proteasome; cell cy 99.9 2.8E-23 9.4E-28 184.1 7.8 117 232-352 52-171 (205)
89 1iru_K 20S proteasome; cell cy 99.9 3.6E-23 1.2E-27 182.8 7.8 119 232-352 45-164 (201)
90 1ryp_M 20S proteasome; multica 99.9 5.7E-23 1.9E-27 184.2 8.2 117 232-352 53-188 (222)
91 2jay_A Proteasome; hydrolase; 99.9 3.4E-23 1.2E-27 192.4 6.9 156 191-352 57-228 (291)
92 1g0u_M Proteasome component PR 99.9 2.8E-23 9.6E-28 191.1 4.5 119 232-352 85-214 (266)
93 3unf_N Proteasome subunit beta 99.9 3.2E-22 1.1E-26 176.3 6.4 114 232-352 44-159 (199)
94 1m4y_A ATP-dependent protease 99.8 5.9E-19 2E-23 151.7 7.4 104 232-351 45-151 (171)
95 2z3b_A ATP-dependent protease 99.7 1.2E-18 4.1E-23 151.0 6.4 99 232-343 51-154 (180)
96 1g3k_A ATP-dependent protease 99.7 2.1E-18 7.2E-23 148.7 6.5 104 232-351 45-152 (174)
97 2hc5_A ORF 99, hypothetical pr 45.8 29 0.00098 26.8 4.7 37 190-226 66-105 (117)
98 3fpw_A HBPS, extracellular HAE 26.7 1.2E+02 0.0042 25.4 6.0 36 164-202 62-97 (192)
99 1vd2_A Protein kinase C, IOTA 25.7 1E+02 0.0034 22.4 4.6 49 163-216 22-72 (89)
100 2a2l_A Unknown; structural gen 22.2 1E+02 0.0034 24.5 4.4 35 165-202 10-44 (145)
101 1b66_A 6-pyruvoyl tetrahydropt 22.0 1.3E+02 0.0043 23.7 4.9 46 233-278 61-116 (140)
102 3c2i_A Methyl-CPG-binding prot 20.5 1.3E+02 0.0045 22.2 4.4 31 188-218 39-69 (97)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=7.7e-56 Score=403.99 Aligned_cols=219 Identities=29% Similarity=0.483 Sum_probs=213.2
Q ss_pred CCcceehhhhHHHHhcC-CCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEA-GAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (352)
Q Consensus 1 p~Grl~QveYa~~av~~-G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (352)
|||||||||||+||+++ |+|+|||+++||||||+|+|.+.+++ +++.+|||+|++||+|+++|+.+|++.++++++.+
T Consensus 12 p~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~ 91 (243)
T 1ryp_A 12 PEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAE 91 (243)
T ss_dssp TTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999997777 88999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHH
Q psy2869 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKT 157 (352)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~ 157 (352)
++.|+++++++++++.+++++++++|.|++++++|||+|++||||||+ +||+||.+||+|++.+++++++|+|++.+++
T Consensus 92 ~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~ 171 (243)
T 1ryp_A 92 AAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITT 171 (243)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHH
Confidence 999999999999999999999999999999999999999999999997 6999999999999999999999999999999
Q ss_pred HHHhhcCC-------CCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEcChhHHHHHHhhCc
Q psy2869 158 FLEKRYSE-------DLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNIP 219 (352)
Q Consensus 158 ~Le~~~~~-------~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g~~~l~~~ei~~~l~~i~ 219 (352)
+||+.|++ +||++||++++++||..+.++|.++++++|++|+++|+++++++|++++++++.
T Consensus 172 ~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g~~~l~~~ei~~~~~~~~ 240 (243)
T 1ryp_A 172 NLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAIA 240 (243)
T ss_dssp HHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTEEEECCHHHHHHHHHHHT
T ss_pred HHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCeEECCHHHHHHHHHHhh
Confidence 99999999 999999999999999999999988999999999999999999999999998874
No 2
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.1e-55 Score=400.49 Aligned_cols=218 Identities=79% Similarity=1.258 Sum_probs=212.7
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.++++. +++.+||++|++|++|+++|+.+|++.+.++++.++
T Consensus 14 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 93 (233)
T 1iru_B 14 PSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLA 93 (233)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998777 888999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+.|+++++.+++++.+++++++++|.|++++++|||++++||||||++||+||.+||+|++.+++++++|+|+++++++|
T Consensus 94 ~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~L 173 (233)
T 1iru_B 94 QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFL 173 (233)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEEESTTHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEEECCCCHHHHHHH
Confidence 99999999999999999999999999999989999999999999998899999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEcChhHHHHHHhhC
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNI 218 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g~~~l~~~ei~~~l~~i 218 (352)
|+.|+++||++||++++++||..+.++|.++++++|++|+++|++.++++|++++++++
T Consensus 174 e~~~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 174 EKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 232 (233)
T ss_dssp HHHCCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTEEEECCHHHHHHHHTTC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCEEECCHHHHHHHHHhc
Confidence 99999999999999999999999999997799999999999999999999999998876
No 3
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=5.3e-55 Score=396.08 Aligned_cols=214 Identities=40% Similarity=0.637 Sum_probs=209.2
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+++++ .++.+||++|++|++|+++|+.+|++.+.++++.++
T Consensus 17 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 96 (233)
T 1yar_A 17 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISA 96 (233)
T ss_dssp TTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHH
T ss_pred cCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 888999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+.|+++++++++++.+++++++++|.++++++.|||++++||||||++||+||.+||+|++.+++++++|+|+++++++|
T Consensus 97 ~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~L 176 (233)
T 1yar_A 97 QQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFL 176 (233)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEEEESTTHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC-eEEcChhHHHHH
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG-FRRLDVATVRDH 214 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g-~~~l~~~ei~~~ 214 (352)
|+.|+++||++||++++++||..+.++|.++++++|++|+++| +++++++|++++
T Consensus 177 e~~~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~~~~~~~~ei~~~ 232 (233)
T 1yar_A 177 EREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKF 232 (233)
T ss_dssp HHHCCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSCCEECCHHHHHTT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCEEECCHHHHHhh
Confidence 9999999999999999999999999999779999999999998 999999999865
No 4
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=2e-54 Score=394.90 Aligned_cols=219 Identities=36% Similarity=0.638 Sum_probs=212.7
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+++++ +++.+||++|++||+|+++|+.+|++.+.++++.+
T Consensus 14 p~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~ 93 (244)
T 1ryp_C 14 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIH 93 (244)
T ss_dssp TTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHH
T ss_pred cCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 78899999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEe-CCCCEEEEECCCCcEEecceEEecCCCchhHH
Q psy2869 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKT 157 (352)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D-~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~ 157 (352)
++.|+++++++++++.+++++++++|.|++++++|||++++|||||| ++||+||.+||+|++.+++++++|+|++++++
T Consensus 94 ~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 173 (244)
T 1ryp_C 94 AQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQT 173 (244)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999 66999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEe--CCC----eEEcChhHHHHHHhhCc
Q psy2869 158 FLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIAD--ENG----FRRLDVATVRDHLSNIP 219 (352)
Q Consensus 158 ~Le~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~--~~g----~~~l~~~ei~~~l~~i~ 219 (352)
+||+.|+++||++||++++++||..+.++| .++++++|++|+ ++| ++.++++|++++++++.
T Consensus 174 ~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~~ 242 (244)
T 1ryp_C 174 LLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTG 242 (244)
T ss_dssp HHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHHT
T ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHHhh
Confidence 999999999999999999999999999995 889999999999 886 89999999999998774
No 5
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.8e-55 Score=403.96 Aligned_cols=218 Identities=38% Similarity=0.647 Sum_probs=212.2
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+++++ .++.+||++|++||+|+++|+.+|++.|+++++.++
T Consensus 21 p~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~ 100 (264)
T 3h4p_A 21 PEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEA 100 (264)
T ss_dssp SSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHH
T ss_pred CCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 889999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+.|+++++.+++++.+|+++++++|.|++++++|||+|++||||||++||+||.+||+|++.+++++|+|+|+..++++|
T Consensus 101 ~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~L 180 (264)
T 3h4p_A 101 QIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELL 180 (264)
T ss_dssp HHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEEEESTTHHHHTTTH
T ss_pred HhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCC--CeEEcChhHHHHHHhhCc
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADEN--GFRRLDVATVRDHLSNIP 219 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~--g~~~l~~~ei~~~l~~i~ 219 (352)
|+.|+++||++||++++++||..+.++ .++++++|++|+++ +|++++++||+++++++.
T Consensus 181 e~~~~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~ 241 (264)
T 3h4p_A 181 EKEYRDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVK 241 (264)
T ss_dssp HHHCCTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTT
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHH
Confidence 999999999999999999999999988 89999999999975 499999999999998885
No 6
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=4e-54 Score=396.43 Aligned_cols=219 Identities=37% Similarity=0.606 Sum_probs=212.6
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+++++ .++.+||++|++||+|+++|+.+|++.|+++++.+
T Consensus 14 p~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~ 93 (261)
T 1iru_C 14 PEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLI 93 (261)
T ss_dssp TTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 45589999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHH
Q psy2869 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKT 157 (352)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~ 157 (352)
++.|+++++.+++++.+++++++++|.++++++.|||+|++||||||+ +||+||.+||+|++.+++++++|+|+.++++
T Consensus 94 ~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 173 (261)
T 1iru_C 94 AQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVS 173 (261)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHH
Confidence 999999999999999999999999999999999999999999999996 5899999999999999999999999999999
Q ss_pred HHHhhcCC-CCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCC----eEEcChhHHHHHHhhCc
Q psy2869 158 FLEKRYSE-DLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENG----FRRLDVATVRDHLSNIP 219 (352)
Q Consensus 158 ~Le~~~~~-~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g----~~~l~~~ei~~~l~~i~ 219 (352)
+||+.|++ +||++||++++++||..+.++| .++++++|++|+++| +++++++||++++.++.
T Consensus 174 ~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~ 241 (261)
T 1iru_C 174 MLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHE 241 (261)
T ss_dssp HHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999 899999999999887 79999999999999884
No 7
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.7e-54 Score=395.00 Aligned_cols=220 Identities=29% Similarity=0.545 Sum_probs=213.4
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+++++ +++.+||++|++|++|+++|+.+|++.+.++++.++
T Consensus 9 p~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 88 (242)
T 1ryp_E 9 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAA 88 (242)
T ss_dssp TTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHH
T ss_pred CCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 888999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCC------CccceEEEeEEEEe-CCCCEEEEECCCCcEEecceEEecCCC
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG------VRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNY 152 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~------~rP~~v~~ivaG~D-~~gp~Ly~iDp~G~~~~~~~~a~G~gs 152 (352)
+.|+++++.+++++.+++++++++|.|+++++ .|||++++|||||| ++||+||.+||+|++.+++++++|+|+
T Consensus 89 ~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs 168 (242)
T 1ryp_E 89 VTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGS 168 (242)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCC
Confidence 99999999999999999999999999999988 99999999999999 569999999999999999999999999
Q ss_pred chhHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC-eEEcChhHHHHHHhhCcc
Q psy2869 153 VNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG-FRRLDVATVRDHLSNIPQ 220 (352)
Q Consensus 153 ~~~~~~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g-~~~l~~~ei~~~l~~i~~ 220 (352)
.+++++||+.|+++||++||++++++||..+.+++.++++++|++|+++| +++++++|++++++++.+
T Consensus 169 ~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~~ 237 (242)
T 1ryp_E 169 EGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELKE 237 (242)
T ss_dssp HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999988789999999999998 799999999999988743
No 8
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=5.9e-54 Score=391.08 Aligned_cols=217 Identities=37% Similarity=0.617 Sum_probs=210.5
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+++++ .++.+||++|++|++|+++|+.+|++.+.++++.+
T Consensus 11 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~ 90 (241)
T 1ryp_D 11 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVE 90 (241)
T ss_dssp TTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 44899999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC--CCCEEEEECCCCcEEecceEEecCCCchhH
Q psy2869 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN--KRPYLYQCDPSGAYFAWKATAMGRNYVNGK 156 (352)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~--~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~ 156 (352)
++.|+++++++++++.+++++++++|.+++++++|||++++||||||+ ++|+||.+||+|++.+++++++|+|++.++
T Consensus 91 ~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~ 170 (241)
T 1ryp_D 91 AQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVR 170 (241)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHH
Confidence 999999999999999999999999999999989999999999999998 799999999999999999999999999999
Q ss_pred HHHHhhc---CCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC-eEEcChhHHHHHHhhCc
Q psy2869 157 TFLEKRY---SEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG-FRRLDVATVRDHLSNIP 219 (352)
Q Consensus 157 ~~Le~~~---~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g-~~~l~~~ei~~~l~~i~ 219 (352)
++||+.| +++||++||++++++||..+.+ .++++++|++|+++| ++.++++|+++++.++.
T Consensus 171 ~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~~ 235 (241)
T 1ryp_D 171 EFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDSDIVALSSEEINQYVTQIE 235 (241)
T ss_dssp HHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTTEEEECCHHHHHHHHHHHT
T ss_pred HHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHh
Confidence 9999999 9999999999999999999987 789999999999986 99999999999998874
No 9
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=6.7e-54 Score=391.87 Aligned_cols=219 Identities=35% Similarity=0.601 Sum_probs=212.5
Q ss_pred CCcceehhhhHHHHhcC-CCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEA-GAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78 (352)
Q Consensus 1 p~Grl~QveYa~~av~~-G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 78 (352)
|||||||||||++|+++ |+|+|||+++||||||+|+|.+.++. +++.+||++|++|++|+++|+.+|++.+.++++.+
T Consensus 18 p~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~ 97 (246)
T 1iru_A 18 PEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYE 97 (246)
T ss_dssp TTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999997777 88999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHH
Q psy2869 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKT 157 (352)
Q Consensus 79 ~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~ 157 (352)
++.|+++++++++++.+++++++++|.|+++++.|||+|++||||||+ +||+||.+||+|++.+++++++|+|++.+++
T Consensus 98 ~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~ 177 (246)
T 1iru_A 98 AANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTS 177 (246)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHH
Confidence 999999999999999999999999999999999999999999999997 6999999999999999999999999999999
Q ss_pred HHHhhcCC--CCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC--eEEcChhHHHHHHhhCc
Q psy2869 158 FLEKRYSE--DLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG--FRRLDVATVRDHLSNIP 219 (352)
Q Consensus 158 ~Le~~~~~--~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g--~~~l~~~ei~~~l~~i~ 219 (352)
+||+.|++ +||++||++++++||..+.++|.++++++|++|+++| ++.++++|++++++++.
T Consensus 178 ~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~~ 243 (246)
T 1iru_A 178 FLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALA 243 (246)
T ss_dssp HHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHHHHHhh
Confidence 99999999 9999999999999999999999889999999999998 79999999999998874
No 10
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=3.7e-54 Score=392.41 Aligned_cols=218 Identities=30% Similarity=0.563 Sum_probs=211.9
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||+|||||++|+++|+|+|||+++||||||+|+|.+++++ +++.+||++|++|++|+++|+.+|++.+.++++.++
T Consensus 17 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 96 (241)
T 1iru_E 17 PEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVET 96 (241)
T ss_dssp TTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCC-----CccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCch
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG-----VRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVN 154 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~-----~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~ 154 (352)
+.|+++++++++++.+++++++++|.|+++.+ .|||++++||||||++||+||.+||+|++.+++++|+|+|+++
T Consensus 97 ~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~ 176 (241)
T 1iru_E 97 QNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEG 176 (241)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcEEecceEEECCCcHH
Confidence 99999999999999999999999999999888 8999999999999977999999999999999999999999999
Q ss_pred hHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC-eEEcChhHHHHHHhhC
Q psy2869 155 GKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG-FRRLDVATVRDHLSNI 218 (352)
Q Consensus 155 ~~~~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g-~~~l~~~ei~~~l~~i 218 (352)
++++||+.|+++||++||++++++||..+.++..++++++|++|+++| ++.++++|++++++++
T Consensus 177 a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~ 241 (241)
T 1iru_E 177 AQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 241 (241)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSCCEECCHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCCeEECCHHHHHHHHHhC
Confidence 999999999999999999999999999999988789999999999998 8999999999998764
No 11
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=4.2e-54 Score=393.54 Aligned_cols=219 Identities=34% Similarity=0.613 Sum_probs=211.8
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+++++ .++.+||++|++||+|+++|+.+|++.+.++++.++
T Consensus 12 p~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 91 (248)
T 1iru_D 12 PDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVEC 91 (248)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 888999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEe-CCCCEEEEECCCCcEEecceEEecCCCchhHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTF 158 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D-~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~ 158 (352)
+.|+++++++++++.+++++++++|.|+++++.|||+|++|||||| +++|+||.+||+|++.+++++++|+|++.++++
T Consensus 92 ~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~ 171 (248)
T 1iru_D 92 QSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREF 171 (248)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999 669999999999999999999999999999999
Q ss_pred HHhhcCCCC--CHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC-eEEcChhHHHHHHhhCccc
Q psy2869 159 LEKRYSEDL--ELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG-FRRLDVATVRDHLSNIPQS 221 (352)
Q Consensus 159 Le~~~~~~~--s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g-~~~l~~~ei~~~l~~i~~~ 221 (352)
||+.|+++| |++||++++++||..+.+ .++++++|++|+++| +++++++|+++++.++...
T Consensus 172 Le~~~~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~~~ 235 (248)
T 1iru_D 172 LEKNYTDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKE 235 (248)
T ss_dssp HTTTCCSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTT
T ss_pred HHHhhcccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHHhc
Confidence 999999999 999999999999999887 578999999999998 9999999999999988543
No 12
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.3e-53 Score=389.90 Aligned_cols=221 Identities=37% Similarity=0.654 Sum_probs=213.1
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.++++. +++.+||++|++||+|+++|..+|++.+.++++.++
T Consensus 17 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 96 (246)
T 1j2p_A 17 PDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEA 96 (246)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 889999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+.|+++++.+++++.+++++++++|.|+++++.|||++++|||||| +||+||.+||+|++.+++++|+|+|+++++++|
T Consensus 97 ~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 175 (246)
T 1j2p_A 97 QINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKATAIGMGRMAVTEFF 175 (246)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeEEEECCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEe-CC-CeEEcChhHHHHHHhhCccch
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIAD-EN-GFRRLDVATVRDHLSNIPQSV 222 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~-~~-g~~~l~~~ei~~~l~~i~~~~ 222 (352)
|+.|+++||++||++++++||..+.++..++++++|++|+ ++ |++.++++|++++++++.+++
T Consensus 176 e~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~~~~~ 240 (246)
T 1j2p_A 176 EKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERI 240 (246)
T ss_dssp HHHCCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEECCHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEECCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977789999999999 64 799999999999998885433
No 13
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=4.5e-54 Score=394.54 Aligned_cols=219 Identities=27% Similarity=0.435 Sum_probs=211.9
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+++++ .++.+||++|++||+|+++|+.+|++.|.++++.++
T Consensus 16 p~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 95 (254)
T 1iru_G 16 PDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEA 95 (254)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 778899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEe-CCCCEEEEECCCCcEEecceEEecCCCchhHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTF 158 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D-~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~ 158 (352)
+.|+++++.+++++.+++++++++|.|++++++|||+|++|||||| ++||+||.+||+|++.+++++++|+|+++++++
T Consensus 96 ~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 175 (254)
T 1iru_G 96 SNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTE 175 (254)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHH
Confidence 9999999999999999999999999999999999999999999999 669999999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCC--C-eEEcChhHHHHHHhhCc
Q psy2869 159 LEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADEN--G-FRRLDVATVRDHLSNIP 219 (352)
Q Consensus 159 Le~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~--g-~~~l~~~ei~~~l~~i~ 219 (352)
||+.|+++||++||++++++||..+.+++ .++.+++|++|+++ | ++++++++++++++..+
T Consensus 176 Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~ 240 (254)
T 1iru_G 176 IEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240 (254)
T ss_dssp HTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence 99999999999999999999999999988 68889999999977 6 99999999999988763
No 14
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.1e-53 Score=393.60 Aligned_cols=218 Identities=32% Similarity=0.557 Sum_probs=212.0
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcCccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQ 80 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~ 80 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.++++. ++.+||++|++||+|+++|+.+|++.|.++++.+++
T Consensus 15 P~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~ 93 (263)
T 1iru_F 15 PQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA-AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECL 93 (263)
T ss_dssp TTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB-CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc-cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999975 467999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHH
Q psy2869 81 QYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLE 160 (352)
Q Consensus 81 ~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le 160 (352)
.|+++++++++++.+++++++++|.|+++++.|||+|++||||||++||+||.+||+|++.+++++++|+|++.++++||
T Consensus 94 ~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le 173 (263)
T 1iru_F 94 DSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLE 173 (263)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEESTTHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred hhcCC--CCCHHHHHHHHHHHHHHhhccC--CCCCceEEEEEeCC-CeEEcChhHHHHHHhhCc
Q psy2869 161 KRYSE--DLELDDAVHTAILTLKEGFEGQ--MTAENIEIGIADEN-GFRRLDVATVRDHLSNIP 219 (352)
Q Consensus 161 ~~~~~--~~s~~eai~l~~~~l~~~~~~d--~~~~~iei~ii~~~-g~~~l~~~ei~~~l~~i~ 219 (352)
+.|++ +||++||++++++||..+.++| .++++++|++|+++ ++++++++|+++++.++.
T Consensus 174 ~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~~ 237 (263)
T 1iru_F 174 RHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237 (263)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTCC
T ss_pred HHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHh
Confidence 99998 9999999999999999999998 78999999999999 699999999999999884
No 15
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.3e-53 Score=387.59 Aligned_cols=218 Identities=33% Similarity=0.516 Sum_probs=209.6
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+++++ .+..+||++|++||+|+++|+.+|++.+.++++.++
T Consensus 13 p~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 92 (244)
T 1ryp_G 13 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEA 92 (244)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 555699999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+.|+++++++++++.+++++++++|.|++++++|||++++||||||++||+||.+||+|++.+++++++|+|+++++++|
T Consensus 93 ~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~L 172 (244)
T 1ryp_G 93 ASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAEL 172 (244)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEECCChHHHHHHH
Confidence 99999999999999999999999999999988999999999999998899999999999999999999999999999999
Q ss_pred Hhh---cCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeC---CCeEEcChhHHHHHHhhC
Q psy2869 160 EKR---YSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADE---NGFRRLDVATVRDHLSNI 218 (352)
Q Consensus 160 e~~---~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~---~g~~~l~~~ei~~~l~~i 218 (352)
|+. |+++||++||++++++||..+.++| .++++++|++|++ +|++.+.++++.+..++.
T Consensus 173 e~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~ 238 (244)
T 1ryp_G 173 EKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDF 238 (244)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHH
T ss_pred HHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHHH
Confidence 997 9999999999999999999999999 7899999999998 789999999987766554
No 16
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=9.9e-54 Score=387.68 Aligned_cols=212 Identities=28% Similarity=0.482 Sum_probs=204.8
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcCccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQ 80 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~ 80 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+.++. ++.+||++|++||+|+++|+.+|++.+.++++.+++
T Consensus 14 p~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~-~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~ 92 (233)
T 1ryp_F 14 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS-SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCN 92 (233)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB-CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc-cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875 467999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHH
Q psy2869 81 QYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLE 160 (352)
Q Consensus 81 ~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le 160 (352)
.|+++++++++++.+++++++++|.|+++.+.|||+|++||||||++||+||.+||+|++.+++++|+|+|++.++++||
T Consensus 93 ~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le 172 (233)
T 1ryp_F 93 YSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLE 172 (233)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEESTTHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred hhcCC--CC--CHHHHHHHHHHHHHHhhccC--CCCCceEEEEEeCC-CeEEcChhHHHHH
Q psy2869 161 KRYSE--DL--ELDDAVHTAILTLKEGFEGQ--MTAENIEIGIADEN-GFRRLDVATVRDH 214 (352)
Q Consensus 161 ~~~~~--~~--s~~eai~l~~~~l~~~~~~d--~~~~~iei~ii~~~-g~~~l~~~ei~~~ 214 (352)
+.|++ +| |++||+++++++|..+. +| .++++++|++|+++ |+++++++|++++
T Consensus 173 ~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~ 232 (233)
T 1ryp_F 173 RTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKY 232 (233)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGGG
T ss_pred HHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHhh
Confidence 99999 99 99999999999999999 55 68999999999999 6999999999765
No 17
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=8.6e-53 Score=385.37 Aligned_cols=218 Identities=57% Similarity=0.913 Sum_probs=209.5
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+.++. +++.+||++|++|++|+++|..+|++.+.++++.++
T Consensus 14 p~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~ 93 (250)
T 1ryp_B 14 PSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVA 93 (250)
T ss_dssp TTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997777 889999999999999999999999999999999999
Q ss_pred HH-HHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHH
Q psy2869 80 QQ-YKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKT 157 (352)
Q Consensus 80 ~~-~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~ 157 (352)
+. |+..++.+++++.+++.++++++.++++.++|||++++||||||+ +||+||.+||+|++.+++++++|+|++++++
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 173 (250)
T 1ryp_B 94 HTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKT 173 (250)
T ss_dssp HHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHH
Confidence 99 999999999999999999999999999988999999999999997 4899999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCC----------------CeEEcChhHHHHHHhhC
Q psy2869 158 FLEKRYSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADEN----------------GFRRLDVATVRDHLSNI 218 (352)
Q Consensus 158 ~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~----------------g~~~l~~~ei~~~l~~i 218 (352)
+||+.|+++||++||++++++||..+.+++.++++++|++|+++ +|++++++||+++++++
T Consensus 174 ~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~l~~~ 250 (250)
T 1ryp_B 174 FLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL 250 (250)
T ss_dssp HHHHHCCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHHHHHHHTTC
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEECCHHHHHHHHHhC
Confidence 99999999999999999999999999998888999999999875 28999999999998764
No 18
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=8e-53 Score=391.11 Aligned_cols=213 Identities=34% Similarity=0.527 Sum_probs=203.0
Q ss_pred CCcceehhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC-ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF-EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||||||||||++|+++|+|+|||+++||||||+|+|.+++++ .+..+|||+|++||+|+++|+.+|++.|+++++.++
T Consensus 17 P~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~ 96 (288)
T 3nzj_F 17 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEA 96 (288)
T ss_dssp TTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 667899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 80 ~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+.|+++++++++++.+|+++++++|.|++++++|||+|++||||||++||+||.+||+|++.+++++++|+|++.++++|
T Consensus 97 ~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~L 176 (288)
T 3nzj_F 97 ASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAEL 176 (288)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHH
T ss_pred HHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh---cCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeC---CCeEEcChhHHHH
Q psy2869 160 EKR---YSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADE---NGFRRLDVATVRD 213 (352)
Q Consensus 160 e~~---~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~---~g~~~l~~~ei~~ 213 (352)
|+. |+++||++||++++++||..+.+++ .++..+||+||++ +|++++.|+++.+
T Consensus 177 ek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~ 237 (288)
T 3nzj_F 177 EKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQ 237 (288)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHH
T ss_pred HHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHH
Confidence 999 9999999999999999999999998 8899999999998 3565555555533
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.2e-48 Score=357.43 Aligned_cols=217 Identities=20% Similarity=0.337 Sum_probs=196.4
Q ss_pred CCccee-hhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcCccccccEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q psy2869 1 PSGKLV-QIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79 (352)
Q Consensus 1 p~Grl~-QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 79 (352)
|||++. |||||++|+++|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|+.+|++.|+++++.++
T Consensus 9 Pe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~ 82 (259)
T 1q5q_A 9 AEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHA 82 (259)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHH
Confidence 899995 9999999999999999999999999999999 357799999999999999999999999999999999
Q ss_pred HHHHHHhC-CCCCHHHHHHHHHH-HHHHHhhcCCCccceEEEeEEEEe----CCCCEEEEECCCCcEE-ecceEEecCCC
Q psy2869 80 QQYKLVYQ-ENIPTQQLVQRVAA-IMQEYTQSGGVRPFGVSLLICGWD----NKRPYLYQCDPSGAYF-AWKATAMGRNY 152 (352)
Q Consensus 80 ~~~~~~~~-~~i~~~~la~~l~~-~~~~~~~~~~~rP~~v~~ivaG~D----~~gp~Ly~iDp~G~~~-~~~~~a~G~gs 152 (352)
+.|++.++ .+++++.+++++++ +.|.|+ .+.|||+|++|||||| ++||+||.+||+|++. +++++++|+|+
T Consensus 83 ~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs 160 (259)
T 1q5q_A 83 DMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTT 160 (259)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSH
T ss_pred HHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCCh
Confidence 99999988 49999999999999 667777 3589999999999999 5799999999999999 88999999999
Q ss_pred chhHHHHHhhcCCCCCHHHHHHHHHHHHHHhh-----ccCCCCCceEEEEEeCC----CeEEcChhHHHHHHhhCccchH
Q psy2869 153 VNGKTFLEKRYSEDLELDDAVHTAILTLKEGF-----EGQMTAENIEIGIADEN----GFRRLDVATVRDHLSNIPQSVH 223 (352)
Q Consensus 153 ~~~~~~Le~~~~~~~s~~eai~l~~~~l~~~~-----~~d~~~~~iei~ii~~~----g~~~l~~~ei~~~l~~i~~~~~ 223 (352)
+.++++||+.|+++||++||++++++||..+. ++|.++++++|++|+++ +|++++++|+.+++.++.....
T Consensus 161 ~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~~~~~~~ 240 (259)
T 1q5q_A 161 EPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEPAAAS 240 (259)
T ss_dssp HHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTTSCCC-----
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999998 78888999999999988 6999999999999988855443
Q ss_pred HH
Q psy2869 224 TA 225 (352)
Q Consensus 224 ~~ 225 (352)
.+
T Consensus 241 ~~ 242 (259)
T 1q5q_A 241 ES 242 (259)
T ss_dssp --
T ss_pred cc
Confidence 33
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=4.6e-47 Score=345.59 Aligned_cols=205 Identities=21% Similarity=0.362 Sum_probs=188.1
Q ss_pred hhhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcCccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHh
Q psy2869 7 QIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVY 86 (352)
Q Consensus 7 QveYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 86 (352)
++|||+||+++|+|+|||+++||||||+|+| .++.+|||+|++||+|+++|+.+|++.|.+.++.+++.|++++
T Consensus 16 r~EYA~~av~~GtT~vgi~~kdgVVlaadkr------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~ 89 (248)
T 3mi0_A 16 RSELARKGIARAKSVVALAYAGGVLFVAENP------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAY 89 (248)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECC------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHhCCCcEEEEEeCCEEEEEEeCC------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999 3577999999999999999999999999999999999999999
Q ss_pred C-CCCCHHHHHHHHH-HHHHHHhhcCCCccceEEEeEEEEeC----CCCEEEEECCCCcEEe-cceEEecCCCchhHHHH
Q psy2869 87 Q-ENIPTQQLVQRVA-AIMQEYTQSGGVRPFGVSLLICGWDN----KRPYLYQCDPSGAYFA-WKATAMGRNYVNGKTFL 159 (352)
Q Consensus 87 ~-~~i~~~~la~~l~-~~~~~~~~~~~~rP~~v~~ivaG~D~----~gp~Ly~iDp~G~~~~-~~~~a~G~gs~~~~~~L 159 (352)
+ .+++++.++++++ .+.|.|++ ++|||+|++||||||+ +||+||.+||+|++.. ++++|+|+|++.++++|
T Consensus 90 ~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~L 167 (248)
T 3mi0_A 90 DRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANAL 167 (248)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHH
Confidence 9 9999999999999 67788887 5899999999999998 6999999999999995 99999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHhh-------ccCCCCCceEEEEEeCCC----eEEcChhHHHHHHhhCc
Q psy2869 160 EKRYSEDLELDDAVHTAILTLKEGF-------EGQMTAENIEIGIADENG----FRRLDVATVRDHLSNIP 219 (352)
Q Consensus 160 e~~~~~~~s~~eai~l~~~~l~~~~-------~~d~~~~~iei~ii~~~g----~~~l~~~ei~~~l~~i~ 219 (352)
|+.|+++||++||++++++||..+. +++++++++||++|+++| |++++++||+++++++.
T Consensus 168 e~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 168 KESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp HHHCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 9999999999999999999999999 556889999999999997 99999999999988773
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.6e-46 Score=334.86 Aligned_cols=201 Identities=23% Similarity=0.368 Sum_probs=191.4
Q ss_pred CCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy2869 18 GAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQL 95 (352)
Q Consensus 18 G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 95 (352)
|+|+|||+++||||||+|+|.+++.+ +++.+||++|++||+|+++|+.+|++.+.++++.+++.|+++++.+++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999865 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecc-eEEecCCCchhHHHHHhhcCCCCCHHHHH
Q psy2869 96 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWK-ATAMGRNYVNGKTFLEKRYSEDLELDDAV 173 (352)
Q Consensus 96 a~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~eai 173 (352)
++++++++|.++ .|||+|++||||||+ +||+||.+||+|++.+++ ++++|+|+++++++||+.|+++||++||+
T Consensus 81 a~~l~~~~~~~~----~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~ 156 (219)
T 3h4p_a 81 ATLLSNILHSSR----MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGI 156 (219)
T ss_dssp HHHHHHHHHHTT----TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHH
T ss_pred HHHHHHHHHHhc----CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 999999999875 689999999999998 699999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhccC-CCCCceEEEEEeCCCeEEcChhHHHHHHhhCccch
Q psy2869 174 HTAILTLKEGFEGQ-MTAENIEIGIADENGFRRLDVATVRDHLSNIPQSV 222 (352)
Q Consensus 174 ~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~~ei~~~l~~i~~~~ 222 (352)
+++++||..+.++| .++++++|++|+++|+++++++||++++.+++.+.
T Consensus 157 ~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~~~~~~ 206 (219)
T 3h4p_a 157 KLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKAKP 206 (219)
T ss_dssp HHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHHhhccc
Confidence 99999999999999 89999999999999999999999999999996544
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=9.3e-46 Score=331.75 Aligned_cols=202 Identities=21% Similarity=0.394 Sum_probs=189.1
Q ss_pred HHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCC
Q psy2869 13 AAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENI 90 (352)
Q Consensus 13 ~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 90 (352)
.++++|+|+|||+++||||||+|+|.+++.+ +++.+||++|+++++|+++|+.+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999999998644 78999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHH
Q psy2869 91 PTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELD 170 (352)
Q Consensus 91 ~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~ 170 (352)
+++.+++++++.+|.++ .|||++++|||||| +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++
T Consensus 83 ~v~~la~~l~~~~~~~r----~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~e 157 (217)
T 1yar_H 83 PIEAVATLLSNMLNQVK----YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVD 157 (217)
T ss_dssp CHHHHHHHHHHHHHHTT----TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred CHHHHHHHHHHHHHhcC----CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHH
Confidence 99999999999998864 78999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccC-CCCCceEEEEEeC-CCeEEcChhHHHHHHhhCc
Q psy2869 171 DAVHTAILTLKEGFEGQ-MTAENIEIGIADE-NGFRRLDVATVRDHLSNIP 219 (352)
Q Consensus 171 eai~l~~~~l~~~~~~d-~~~~~iei~ii~~-~g~~~l~~~ei~~~l~~i~ 219 (352)
||++++++||..+.++| .++++++|++|++ +|++.++++|++++++++.
T Consensus 158 ea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 158 EGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLG 208 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHHHH
Confidence 99999999999999999 8899999999998 8999999999999998764
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=2.8e-45 Score=325.22 Aligned_cols=197 Identities=23% Similarity=0.386 Sum_probs=189.8
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.+++.+ +++.+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998754 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecc-eEEecCCCchhHHHHHhhcCCCCCHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWK-ATAMGRNYVNGKTFLEKRYSEDLELDDAVHT 175 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 175 (352)
+++++.+|.++ .|||++++||||||++||+||.+||+|++.+++ ++++|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~r----~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 156 (202)
T 1j2q_H 81 TLTSNLLNSYR----YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVEL 156 (202)
T ss_dssp HHHHHHHHHTT----TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhC----CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHH
Confidence 99999998864 789999999999999899999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-CCCCceEEEEEeCCCeEEcChhHHHHHHhhCc
Q psy2869 176 AILTLKEGFEGQ-MTAENIEIGIADENGFRRLDVATVRDHLSNIP 219 (352)
Q Consensus 176 ~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~~ei~~~l~~i~ 219 (352)
+++||..+.++| .++++++|++|+++|++.++++|+++++++++
T Consensus 157 a~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 157 AVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHHhh
Confidence 999999999999 89999999999999999999999999998774
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=6.4e-45 Score=337.83 Aligned_cols=207 Identities=14% Similarity=0.256 Sum_probs=190.5
Q ss_pred hHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhC
Q psy2869 10 YALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQ 87 (352)
Q Consensus 10 Ya~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 87 (352)
++.+++++|+|+|||+++||||||+|+|.+.|.+ +++.+||++|+++++|+++|..+|++.+.++++.+++.|+++++
T Consensus 67 ~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~ 146 (287)
T 3nzj_K 67 DCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREK 146 (287)
T ss_dssp ---------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6788999999999999999999999999998765 78999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCC
Q psy2869 88 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSED 166 (352)
Q Consensus 88 ~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ 166 (352)
++++++.+++++++++|.+++ +||++++||||||+ +||+||.+||+|++.+++++++|+|+.+++++||+.|+++
T Consensus 147 ~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~d 222 (287)
T 3nzj_K 147 ERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWD 222 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTT
T ss_pred CCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCC
Confidence 999999999999999999885 49999999999994 5899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeEEcChhHHHHHHhhCcc
Q psy2869 167 LELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFRRLDVATVRDHLSNIPQ 220 (352)
Q Consensus 167 ~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~~ei~~~l~~i~~ 220 (352)
||++||++++++||..+.+|| .++++++|++|+++|+++++++|+++++.++.+
T Consensus 223 ms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~~~l~~~~e 277 (287)
T 3nzj_K 223 LSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKE 277 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHHHHHHHHHH
Confidence 999999999999999999999 899999999999999999999999998887754
No 25
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.6e-44 Score=336.16 Aligned_cols=211 Identities=17% Similarity=0.183 Sum_probs=196.5
Q ss_pred HHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCC
Q psy2869 11 ALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE 88 (352)
Q Consensus 11 a~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 88 (352)
|++|+++|+|+|||+++||||||+|+|.+++.+ +++.+|||+|+++++|+++|..+|++.|+++++.+++.|+++++.
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 899999999999999999999999999998655 789999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-C-----CEEEEECCCCcEEec--ceEEecCCCchhHHHHH
Q psy2869 89 NIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-R-----PYLYQCDPSGAYFAW--KATAMGRNYVNGKTFLE 160 (352)
Q Consensus 89 ~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-g-----p~Ly~iDp~G~~~~~--~~~a~G~gs~~~~~~Le 160 (352)
+++++.++++|++++|.++++. +|||+|++||||||++ + |+||.+||+|++.++ +++++|+|+++++++||
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le 216 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK 216 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence 9999999999999999998865 8999999999999986 6 999999999999999 89999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCc--e-----EEEEEeCCCeEEcChhHHHHHHhhCccch
Q psy2869 161 KRYSEDLELDDAVHTAILTLKEGFEGQ-MTAEN--I-----EIGIADENGFRRLDVATVRDHLSNIPQSV 222 (352)
Q Consensus 161 ~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~--i-----ei~ii~~~g~~~l~~~ei~~~l~~i~~~~ 222 (352)
+.|+++||++||++++++||..+.++| .+++. + +|++|+++|+++++++|+++++.++.+.+
T Consensus 217 ~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei~~~l~~i~~~~ 286 (294)
T 1q5r_H 217 KIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAER 286 (294)
T ss_dssp HHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHHCC--
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 55442 5 99999999999999999999999885543
No 26
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.7e-44 Score=320.70 Aligned_cols=198 Identities=20% Similarity=0.354 Sum_probs=190.4
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.++|.+ +++.+||++|++|++|+++|+.+|++.+.++++.+++.|+++++.+++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999999755 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTA 176 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l~ 176 (352)
+++++.+|.+++ +||++++||||||++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~ 156 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLA 156 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 999999998873 5899999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC-CCCCceEEEEEeCCCeEEcChhHHHHHHhhCcc
Q psy2869 177 ILTLKEGFEGQ-MTAENIEIGIADENGFRRLDVATVRDHLSNIPQ 220 (352)
Q Consensus 177 ~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~~ei~~~l~~i~~ 220 (352)
++||..+.++| .++++++|++|+++|++.++++|++++++++..
T Consensus 157 ~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~~~ 201 (204)
T 1iru_L 157 RRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSG 201 (204)
T ss_dssp HHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHHHTC
T ss_pred HHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHHHHhcc
Confidence 99999999999 899999999999999999999999999988754
No 27
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=7.7e-45 Score=326.32 Aligned_cols=201 Identities=13% Similarity=0.153 Sum_probs=191.2
Q ss_pred HHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHH-HhCC
Q psy2869 12 LAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKL-VYQE 88 (352)
Q Consensus 12 ~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 88 (352)
++|+++|+|+|||+++||||||+|+|.+++.+ +++.+||++|++|++|+++|..+|++.|.++++.+++.|++ +++.
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999998766 78999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCC--C
Q psy2869 89 NIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE--D 166 (352)
Q Consensus 89 ~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~ 166 (352)
+++++.+++++++.++.++ +++|||++++||||+|+++|+||.+||+|++.+++++++|+|+++++++||+.|++ +
T Consensus 82 ~~~v~~la~~l~~~ly~~r--~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 159 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRR--SKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred CCCHHHHHHHHHHHHHHhc--ccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence 9999999999999997654 56899999999999998899999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeEEcChhHHHHH
Q psy2869 167 LELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFRRLDVATVRDH 214 (352)
Q Consensus 167 ~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~~ei~~~ 214 (352)
||++||++++++||..+.++| .++++++|++|+++|++.+++++++..
T Consensus 160 mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~ 208 (219)
T 1iru_N 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETN 208 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccch
Confidence 999999999999999999999 899999999999999999999988653
No 28
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=7e-44 Score=318.52 Aligned_cols=198 Identities=14% Similarity=0.265 Sum_probs=189.5
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.++|.+ +++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++.+++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999999644 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEe-CCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHT 175 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D-~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 175 (352)
+++++++|.++++ ||++++|||||| +++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 9999999999954 899999999999 45999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-CCCCceEEEEEeCCCeEEcChhHHHHHHhhCcc
Q psy2869 176 AILTLKEGFEGQ-MTAENIEIGIADENGFRRLDVATVRDHLSNIPQ 220 (352)
Q Consensus 176 ~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~~ei~~~l~~i~~ 220 (352)
+++||..+.++| .++++++|++|+++|+++++++|+++++.++.+
T Consensus 157 a~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~~~~~~~ 202 (212)
T 1ryp_L 157 GKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKE 202 (212)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHHHHHHHHHH
Confidence 999999999999 899999999999999999999999999887743
No 29
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=5.7e-44 Score=332.28 Aligned_cols=213 Identities=16% Similarity=0.179 Sum_probs=176.8
Q ss_pred hhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHH
Q psy2869 8 IEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLV 85 (352)
Q Consensus 8 veYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 85 (352)
+|||++ +++|+|+|||+++||||||+|+|.+++.+ +++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.
T Consensus 48 ~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~ 126 (291)
T 2jay_A 48 AGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKL 126 (291)
T ss_dssp -----------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhh
Confidence 799999 99999999999999999999999999855 788999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-C-----CEEEEECCCCcEE--ecceEEecCCCchhHH
Q psy2869 86 YQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-R-----PYLYQCDPSGAYF--AWKATAMGRNYVNGKT 157 (352)
Q Consensus 86 ~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-g-----p~Ly~iDp~G~~~--~~~~~a~G~gs~~~~~ 157 (352)
++.+++++.+++++++++|.+++ ..+|||+|++||||||++ + |+||.+||+|++. +++++++|+|++++++
T Consensus 127 ~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~ 205 (291)
T 2jay_A 127 EGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKS 205 (291)
T ss_dssp HSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHH
Confidence 99999999999999999999876 357999999999999986 4 8999999999998 8899999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhhccC-CCCCc-------eEEEEEeCCCeEEcChhHHHHHHhhCccch
Q psy2869 158 FLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAEN-------IEIGIADENGFRRLDVATVRDHLSNIPQSV 222 (352)
Q Consensus 158 ~Le~~~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~-------iei~ii~~~g~~~l~~~ei~~~l~~i~~~~ 222 (352)
+||+.|+++||++||++++++||..+.++| .+++. ++|++|+++|+++++++|++++++++.+.+
T Consensus 206 ~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~l~~~ei~~~~~~~~~~~ 278 (291)
T 2jay_A 206 SMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESR 278 (291)
T ss_dssp HHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEECCHHHHHHHHHHC----
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEEcCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 54542 269999999999999999999999985543
No 30
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=4.4e-43 Score=318.06 Aligned_cols=201 Identities=17% Similarity=0.200 Sum_probs=189.5
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.++|.+ +++.+||++|+++++|+++|+.+|++.+.++++.+++.|+++++.+++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 6899999999999999999998644 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeCC-C-----CEEEEECCCCcEEec--ceEEecCCCchhHHHHHhhcCCCCC
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-R-----PYLYQCDPSGAYFAW--KATAMGRNYVNGKTFLEKRYSEDLE 168 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-g-----p~Ly~iDp~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~s 168 (352)
++|++++|.++++. +|||+|++||||||++ + |+||.+||+|++.++ +++++|+|+.+++++||+.|+++||
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 159 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 159 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCC
Confidence 99999999988775 8999999999999987 7 999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccC-CCCCc--e-----EEEEEeCCCeEEcChhHHHHHHhhCcc
Q psy2869 169 LDDAVHTAILTLKEGFEGQ-MTAEN--I-----EIGIADENGFRRLDVATVRDHLSNIPQ 220 (352)
Q Consensus 169 ~~eai~l~~~~l~~~~~~d-~~~~~--i-----ei~ii~~~g~~~l~~~ei~~~l~~i~~ 220 (352)
++||++++++||..+.++| .+++. + +|++|+++|++.++++|+++++.++.+
T Consensus 160 ~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~~~~~~~~~ 219 (235)
T 1q5q_H 160 EETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVA 219 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHHHHHHHHHH
Confidence 9999999999999999999 55542 2 999999999999999999999988843
No 31
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.9e-43 Score=314.19 Aligned_cols=194 Identities=15% Similarity=0.209 Sum_probs=185.5
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.+++.+ +++.+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999999944 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHT 175 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 175 (352)
+++++.+|.+++ ||++++||||||+ +||+||.+||+|++.+++++++|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l 155 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF 155 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999884 9999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-CCCCceEEEEEeCCC--eEEcChhHHHHHHhh
Q psy2869 176 AILTLKEGFEGQ-MTAENIEIGIADENG--FRRLDVATVRDHLSN 217 (352)
Q Consensus 176 ~~~~l~~~~~~d-~~~~~iei~ii~~~g--~~~l~~~ei~~~l~~ 217 (352)
+++||..+.++| .++++++|++|+++| ++.++++||++++++
T Consensus 156 ~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 156 TANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 999999999999 899999999999998 578999999877654
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=5e-44 Score=323.96 Aligned_cols=201 Identities=14% Similarity=0.222 Sum_probs=191.1
Q ss_pred HHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHH-----
Q psy2869 12 LAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKL----- 84 (352)
Q Consensus 12 ~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 84 (352)
++|+++|+|+|||+++||||||+|+|.+.+.+ +++.+||++|++|++|+++|..+|++.|.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 46889999999999999999999999998755 78999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHHHHhhc
Q psy2869 85 VYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRY 163 (352)
Q Consensus 85 ~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~ 163 (352)
+++.+++++.+++++++.++.++ .++|||++++||||||++ +|+||.+||+|++.+++++++|+|+++++++||+.|
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r--~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRR--SKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHH--HTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHHHHhc--CCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 89999999999999999996654 568999999999999986 999999999999999999999999999999999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCC-CeEEcChhHHHHH
Q psy2869 164 SE-----DLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADEN-GFRRLDVATVRDH 214 (352)
Q Consensus 164 ~~-----~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~-g~~~l~~~ei~~~ 214 (352)
++ +||++||++++++||..+.++| .++++++|++|+++ |++.++++|++++
T Consensus 160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENM 217 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSC
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccc
Confidence 99 9999999999999999999999 89999999999999 8999999998764
No 33
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=5.5e-43 Score=316.58 Aligned_cols=190 Identities=17% Similarity=0.279 Sum_probs=183.2
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
||+|||+++||||||+|+|.+++++ +++.+|||+|++||+|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 6899999999999999999999987 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTA 176 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l~ 176 (352)
+++++.++.+ .+||++++||||||++||+||.+||+|++.+++++|+|+|+..++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELL 155 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHH
Confidence 9999999865 36999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC-CCCCceEEEEEeCCCeEEcChhHHHH
Q psy2869 177 ILTLKEGFEGQ-MTAENIEIGIADENGFRRLDVATVRD 213 (352)
Q Consensus 177 ~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~~ei~~ 213 (352)
++||..+.++| .++++++|++|+++|++.+++.+++.
T Consensus 156 ~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~ 193 (234)
T 3unf_H 156 VEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPT 193 (234)
T ss_dssp HHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceeccc
Confidence 99999999999 79999999999999999999999864
No 34
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=9.8e-43 Score=319.38 Aligned_cols=195 Identities=17% Similarity=0.220 Sum_probs=178.3
Q ss_pred HHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCC
Q psy2869 12 LAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQEN 89 (352)
Q Consensus 12 ~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 89 (352)
.||+++|+|+|||+++||||||+|+|.+++.+ +++.+||++|++||+|+++|..+|++.+.++++.+++.|+++++++
T Consensus 23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 102 (261)
T 3nzj_H 23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE 102 (261)
T ss_dssp -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence 68999999999999999999999999999876 7889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCH
Q psy2869 90 IPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLEL 169 (352)
Q Consensus 90 i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~ 169 (352)
++++.+++++++.++.+ .+||++++||||||++||+||.+||+|++.+++++|+|+|++.++++||+.|+++||+
T Consensus 103 ~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 177 (261)
T 3nzj_H 103 PRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTK 177 (261)
T ss_dssp CCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCH
T ss_pred CCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCH
Confidence 99999999999988764 3699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCC-eEEcChhHH
Q psy2869 170 DDAVHTAILTLKEGFEGQ-MTAENIEIGIADENG-FRRLDVATV 211 (352)
Q Consensus 170 ~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g-~~~l~~~ei 211 (352)
|||++++++||..+.++| .++++++|++|+++| ++.+.+-.+
T Consensus 178 eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~ 221 (261)
T 3nzj_H 178 EEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLT 221 (261)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccC
Confidence 999999999999999999 899999999999999 666655443
No 35
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.1e-42 Score=307.51 Aligned_cols=188 Identities=22% Similarity=0.317 Sum_probs=180.0
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.+++++ +++.+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6899999999999999999999887 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeC--CCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDN--KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVH 174 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~--~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~ 174 (352)
+++++.+|.+++. .+||++++||||||+ ++|+||.+||+|++.+++++++|+|+++++++||+.|+++||++||++
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 159 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD 159 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999998743 359999999999996 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccC-CCCCceEEEEEeCCCeEEcCh
Q psy2869 175 TAILTLKEGFEGQ-MTAENIEIGIADENGFRRLDV 208 (352)
Q Consensus 175 l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~ 208 (352)
++++||..+.++| .++++++|++|+++|++.+++
T Consensus 160 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~ 194 (198)
T 1ryp_K 160 LLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECC
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecc
Confidence 9999999999999 899999999999999998876
No 36
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=9.6e-43 Score=309.59 Aligned_cols=189 Identities=15% Similarity=0.255 Sum_probs=180.6
Q ss_pred HHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCC
Q psy2869 11 ALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE 88 (352)
Q Consensus 11 a~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 88 (352)
.++|+++|+|+|||+++||||||+|+|.+++.+ +++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++
T Consensus 2 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 2 KKGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp CTTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 368999999999999999999999999999954 788999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCC
Q psy2869 89 NIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDL 167 (352)
Q Consensus 89 ~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~ 167 (352)
++++.+++++++.+|.+++. |++++||||||+ +||+||.+||+|++.+++++++|+|+++++++||+.|+++|
T Consensus 82 -~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 155 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENM 155 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTC
T ss_pred -CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCC
Confidence 99999999999999999853 999999999997 58999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeEE
Q psy2869 168 ELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFRR 205 (352)
Q Consensus 168 s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~ 205 (352)
|++||++++++||..+.++| .++++++|++|+++|++.
T Consensus 156 s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~ 194 (205)
T 1ryp_H 156 SKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVER 194 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEE
Confidence 99999999999999999999 899999999999999543
No 37
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=3e-42 Score=308.18 Aligned_cols=187 Identities=21% Similarity=0.241 Sum_probs=177.9
Q ss_pred hcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy2869 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPT 92 (352)
Q Consensus 15 v~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 92 (352)
+++|+|+|||+++||||||+|+|.+++++ +++.+||++|++|++|+++|+.+|++.+.++++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 57899999999999999999999999987 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHHHHhh---------
Q psy2869 93 QQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKR--------- 162 (352)
Q Consensus 93 ~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~--------- 162 (352)
+.+++++++.++. ++ .|||++++||||||++ +|+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 86 ~~la~~l~~~~y~--~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~ 161 (213)
T 1iru_M 86 GAIAAMLSTILYS--RR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 161 (213)
T ss_dssp HHHHHHHHHHHHH--TT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred HHHHHHHHHHHHh--hC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence 9999999999954 33 7999999999999976 59999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeEE
Q psy2869 163 YSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFRR 205 (352)
Q Consensus 163 ~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~ 205 (352)
|+++||++||++++++||..+.++| .++++++|++|+++|++.
T Consensus 162 ~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 205 (213)
T 1iru_M 162 EHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIRE 205 (213)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEE
Confidence 8899999999999999999999999 899999999999999653
No 38
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=2.7e-43 Score=324.90 Aligned_cols=205 Identities=14% Similarity=0.218 Sum_probs=192.2
Q ss_pred hhhHHHHhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHH-
Q psy2869 8 IEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKL- 84 (352)
Q Consensus 8 veYa~~av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~- 84 (352)
.+.+++++++|+|+|||+++||||||+|+|.+.+.+ +++.+||++|++||+|+++|+.+|++.|+++++.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 456678999999999999999999999999998755 78899999999999999999999999999999999999998
Q ss_pred ----HhCCCCCHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHHH
Q psy2869 85 ----VYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 159 (352)
Q Consensus 85 ----~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~L 159 (352)
+++.+++++.++++++++++.++ .++|||+|++||||||++ +|+||.+||+|++.+++++++|+|+.+++++|
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~ly~~r--~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 188 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQRR--SKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL 188 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHHH--HTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHH
T ss_pred cchhhcCCCCCHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHH
Confidence 89999999999999999996654 568999999999999986 99999999999999999999999999999999
Q ss_pred HhhcCC-----CCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCC-CeEEcChhHHHHH
Q psy2869 160 EKRYSE-----DLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADEN-GFRRLDVATVRDH 214 (352)
Q Consensus 160 e~~~~~-----~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~-g~~~l~~~ei~~~ 214 (352)
|+.|++ +||++||++++++||..+.++| .++++++|++|+++ |++.++++||+++
T Consensus 189 e~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 189 RKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENM 250 (266)
T ss_dssp TTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCC
T ss_pred HHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhh
Confidence 999999 9999999999999999999999 89999999999999 9999999998764
No 39
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.6e-41 Score=305.19 Aligned_cols=187 Identities=17% Similarity=0.216 Sum_probs=179.1
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.+++++ +++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999999987 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTA 176 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l~ 176 (352)
+++++.++.+ .|||++++||||+|++||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA 155 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence 9999998765 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC-CCCCceEEEEEeCCC-eEEcChhH
Q psy2869 177 ILTLKEGFEGQ-MTAENIEIGIADENG-FRRLDVAT 210 (352)
Q Consensus 177 ~~~l~~~~~~d-~~~~~iei~ii~~~g-~~~l~~~e 210 (352)
++||..+.++| .++++++|++|+++| ++.+.+.+
T Consensus 156 ~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~ 191 (222)
T 1ryp_I 156 SDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYL 191 (222)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEE
T ss_pred HHHHHHHHhccccCCCcEEEEEEECCCCEEEEecee
Confidence 99999999999 789999999999999 98876655
No 40
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1e-41 Score=306.48 Aligned_cols=188 Identities=21% Similarity=0.279 Sum_probs=178.3
Q ss_pred HhcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhC-CCC
Q psy2869 14 AVEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQ-ENI 90 (352)
Q Consensus 14 av~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i 90 (352)
.+++|+|+|||+++||||||+|+|.+++++ +++.+||++|+++++|+++|..+|++.|.++++.+++.|+++++ +++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 467999999999999999999999999987 78999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCC-CCEEEEECCCCcEEecceEEecCCCchhHHHHHhh-------
Q psy2869 91 PTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKR------- 162 (352)
Q Consensus 91 ~~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~-gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~------- 162 (352)
+++.+|+++++.++.++ .|||++++||||||++ +|+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 85 ~v~~la~~l~~~ly~~r----~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 85 SINSAARNIQHLLYGKR----FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp CHHHHHHHHHHHHHTTT----TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CHHHHHHHHHHHHHhcC----CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 99999999999996533 6899999999999976 59999999999999999999999999999999998
Q ss_pred ----------cCCCCCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeEE
Q psy2869 163 ----------YSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFRR 205 (352)
Q Consensus 163 ----------~~~~~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~ 205 (352)
|+++||++||++++++||..+.++| .++++++|++|+++|++.
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~ 214 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRK 214 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEE
Confidence 8899999999999999999999999 899999999999999653
No 41
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=2.9e-41 Score=300.01 Aligned_cols=186 Identities=15% Similarity=0.255 Sum_probs=175.1
Q ss_pred hcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy2869 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPT 92 (352)
Q Consensus 15 v~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 92 (352)
+.+|+|+|||+++||||||+|+|.+++++ +++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 46899999999999999999999999988 5689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC--CCCEEEEECCCCcEEec-ceEEecCCCchhHHHHHhhcCCCCCH
Q psy2869 93 QQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN--KRPYLYQCDPSGAYFAW-KATAMGRNYVNGKTFLEKRYSEDLEL 169 (352)
Q Consensus 93 ~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~--~gp~Ly~iDp~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~ 169 (352)
+.+++++++.+ |+++ ..||++++||||||+ ++|+||.+||+|++.++ .++++|+|+++++++||+.|+++||+
T Consensus 85 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 85 YTLMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp HHHHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 99999999999 4544 349999999999995 68999999999999776 56999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeE
Q psy2869 170 DDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFR 204 (352)
Q Consensus 170 ~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~ 204 (352)
+||++++++||..+.++| .++++++|++|+++|++
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~ 196 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKIT 196 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEE
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEE
Confidence 999999999999999999 88999999999999954
No 42
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=5.7e-41 Score=297.91 Aligned_cols=185 Identities=16% Similarity=0.189 Sum_probs=174.7
Q ss_pred hcCCCcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q psy2869 15 VEAGAPSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPT 92 (352)
Q Consensus 15 v~~G~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 92 (352)
+.+|+|+|||+++||||||+|+|.+++++ +++.+||++|+ |++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 57899999999999999999999999998 56899999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeC--CCCEEEEECCCCcEEec-ceEEecCCCchhHHHHHhhcCCCCCH
Q psy2869 93 QQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN--KRPYLYQCDPSGAYFAW-KATAMGRNYVNGKTFLEKRYSEDLEL 169 (352)
Q Consensus 93 ~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~--~gp~Ly~iDp~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~ 169 (352)
+.+++++++.+ |+++. .||++++||||||+ ++|+||.+||+|++.++ .++++|+|+++++++||+.|+++||+
T Consensus 84 ~~la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 159 (204)
T 1ryp_J 84 ETFTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP 159 (204)
T ss_dssp HHHHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCH
Confidence 99999999999 55543 39999999999996 58999999999999777 56999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC-CCCCceEEEEEeCCCeE
Q psy2869 170 DDAVHTAILTLKEGFEGQ-MTAENIEIGIADENGFR 204 (352)
Q Consensus 170 ~eai~l~~~~l~~~~~~d-~~~~~iei~ii~~~g~~ 204 (352)
+||++++++||..+.++| .++++++|++|+++|++
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~ 195 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDEVV 195 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEE
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEE
Confidence 999999999999999999 89999999999999954
No 43
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=4.7e-41 Score=297.76 Aligned_cols=188 Identities=20% Similarity=0.264 Sum_probs=175.3
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.+++.+ +++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999999744 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHT 175 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 175 (352)
+++++.+....+ . .|||++++||||||+ ++|+||.+||+|++.+++++++|+|+++++++||+.|+++||++||+++
T Consensus 82 ~~~~~~l~~~~~-~-~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 159 (201)
T 1iru_K 82 NFTRRNLADCLR-S-RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVEL 159 (201)
T ss_dssp HHHHHHHHHHHT-S-SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHh-c-CCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHH
Confidence 999887632221 2 379999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-CCCCceEEEEEeCCCeEEcCh
Q psy2869 176 AILTLKEGFEGQ-MTAENIEIGIADENGFRRLDV 208 (352)
Q Consensus 176 ~~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~ 208 (352)
+++||..+.+|| .++++++|++|+++|++.+++
T Consensus 160 ~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~ 193 (201)
T 1iru_K 160 LRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDN 193 (201)
T ss_dssp HHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCC
T ss_pred HHHHHHHHHhhccccCCceEEEEEcCCCeEEeec
Confidence 999999999999 889999999999999887764
No 44
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=7.6e-41 Score=302.99 Aligned_cols=188 Identities=18% Similarity=0.241 Sum_probs=179.6
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
+|+|||+++||||||+|+|.+++++ +++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6899999999999999999999988 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecceEEecCCCchhHHHHHhhcCCCCCHHHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTA 176 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l~ 176 (352)
+++++.++.++ +||++++||||||++||+||.+||+|++.+++++++|+|++.++++||+.|+++||++||++++
T Consensus 81 ~~l~~~l~~~~-----~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 1iru_I 81 RMLKQMLFRYR-----GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV 155 (234)
T ss_dssp HHHHHHHHHTT-----TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred HHHHHHHHhcC-----CCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHH
Confidence 99999998764 5999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC-CCCCceEEEEEeCCCeEEcChhHH
Q psy2869 177 ILTLKEGFEGQ-MTAENIEIGIADENGFRRLDVATV 211 (352)
Q Consensus 177 ~~~l~~~~~~d-~~~~~iei~ii~~~g~~~l~~~ei 211 (352)
++||..+.++| .++++++|++|+++|++.+.+.++
T Consensus 156 ~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~ 191 (234)
T 1iru_I 156 SEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTV 191 (234)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEEC
T ss_pred HHHHHHHHHhcccCCCCEEEEEEECCcEEEEcceec
Confidence 99999999999 789999999999999987776554
No 45
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.6e-41 Score=300.39 Aligned_cols=190 Identities=14% Similarity=0.189 Sum_probs=178.1
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLV 96 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 96 (352)
||+|||+++||||||+|+|.+++.+ +++.+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999999955 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceEEEeEEEEeC-CCCEEEEECCCCcEEecc-eEEecCCCchhHHHHHhhcCCCCCHHHHHH
Q psy2869 97 QRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSGAYFAWK-ATAMGRNYVNGKTFLEKRYSEDLELDDAVH 174 (352)
Q Consensus 97 ~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~-~gp~Ly~iDp~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~eai~ 174 (352)
+++++.+|.++ |||++++||||||+ ++|+||. |+|++.+++ ++++|+|+++++++||+.|+++||++||++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~ 153 (199)
T 3unf_N 81 NVVKNISYKYR-----EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRR 153 (199)
T ss_dssp HHHHHHHHHTT-----TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHhcC-----CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 99999998754 69999999999998 5899999 999976665 566799999999999999999999999999
Q ss_pred HHHHHHHHhhccC-CCCCceEEEEEeCCC--eEEcChhHHHHHH
Q psy2869 175 TAILTLKEGFEGQ-MTAENIEIGIADENG--FRRLDVATVRDHL 215 (352)
Q Consensus 175 l~~~~l~~~~~~d-~~~~~iei~ii~~~g--~~~l~~~ei~~~l 215 (352)
++++||..+.++| .++++++|++|+++| ++.++++||++++
T Consensus 154 la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 154 FTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFY 197 (199)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred HHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence 9999999999999 899999999999998 7889999987654
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=5.6e-34 Score=247.86 Aligned_cols=168 Identities=12% Similarity=0.093 Sum_probs=151.9
Q ss_pred cCCCcEEEEEeCCEEEEEEecCCCCC-c-C-ccccccEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCC
Q psy2869 16 EAGAPSVGIKASNGIVLATEKKQKTI-L-F-EDCIHKVEPI-TDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIP 91 (352)
Q Consensus 16 ~~G~tvIgi~~~dgVvlaad~~~~~~-~-~-~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 91 (352)
.+|+|+|||+++||||||+|+|.+.+ + + +++.+||++| ++|++|+++|..+|++.|.++++.+++.|+ +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---- 75 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---- 75 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T----
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C----
Confidence 57999999999999999999999985 6 6 8899999999 999999999999999999999999999988 3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEec--ceEEecCCCchhHHHHHhhcCC---C
Q psy2869 92 TQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAW--KATAMGRNYVNGKTFLEKRYSE---D 166 (352)
Q Consensus 92 ~~~la~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~---~ 166 (352)
.+.+.++++.+.++++...|||++++||| ++|+||.+||+|++.++ +++|+|+|+++++++||+.|++ +
T Consensus 76 --~~~~~~~~l~~~~~~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~ 149 (180)
T 2z3b_A 76 --NLKRAAVELAKEWRSDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGES 149 (180)
T ss_dssp --CHHHHHHHHHHHHHHCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGG
T ss_pred --ChHHHHHHHHHHHHhhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCC
Confidence 23444455666677778899999999999 47999999999999984 9999999999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHHhhccC-CCCCceEEEEEe
Q psy2869 167 LELDDAVHTAILTLKEGFEGQ-MTAENIEIGIAD 199 (352)
Q Consensus 167 ~s~~eai~l~~~~l~~~~~~d-~~~~~iei~ii~ 199 (352)
||.|| ++.+||..+.+|| .++++++|.+|+
T Consensus 150 mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 150 MSASE---IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp CCHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred CCHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 99999 4679999999999 999999999883
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.5e-33 Score=243.31 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=146.1
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPI-TDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQL 95 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 95 (352)
+|+|||+++||||||+|+|.+++.+ +++.+||++| ++|++++++|..+|++.+.++++.+++.|+.+ +
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~---------~ 71 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN---------L 71 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC---------H
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc---------H
Confidence 6899999999999999999998754 8889999999 99999999999999999999999999998744 2
Q ss_pred HHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecc--eEEecCCCchhHHHHHhhcC-CCCCHHHH
Q psy2869 96 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWK--ATAMGRNYVNGKTFLEKRYS-EDLELDDA 172 (352)
Q Consensus 96 a~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~--~~a~G~gs~~~~~~Le~~~~-~~~s~~ea 172 (352)
.+.++++.+.++++...|||++++|++ | +|+||.+||+|++.+++ ++++|+|+++++++||+.|+ ++||.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~--- 144 (171)
T 1m4y_A 72 TKAAVELAKDWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA--- 144 (171)
T ss_dssp HHHHHHHHHHHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---
Confidence 333444444556666678999999998 5 89999999999999988 99999999999999999999 99996
Q ss_pred HHHHHHHHHHhhccC-CCCCceEEEEE
Q psy2869 173 VHTAILTLKEGFEGQ-MTAENIEIGIA 198 (352)
Q Consensus 173 i~l~~~~l~~~~~~d-~~~~~iei~ii 198 (352)
++++++||..+.+|| .++++++|.++
T Consensus 145 ~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 678999999999999 89999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=3.3e-33 Score=241.84 Aligned_cols=165 Identities=10% Similarity=0.043 Sum_probs=146.9
Q ss_pred CcEEEEEeCCEEEEEEecCCCCCcC--ccccccEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy2869 19 APSVGIKASNGIVLATEKKQKTILF--EDCIHKVEPI-TDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQL 95 (352)
Q Consensus 19 ~tvIgi~~~dgVvlaad~~~~~~~~--~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 95 (352)
+|+|||+++||||||+|+|.+++.+ +++.+||++| ++|++++++|..+|++.|.++++.+++.|+. +.
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~--- 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL--- 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---
Confidence 6899999999999999999998854 8899999999 9999999999999999999999999999885 33
Q ss_pred HHHHHHHHHHHhhcCCCccceEEEeEEEEeCCCCEEEEECCCCcEEecc---eEEecCCCchhHHHHHhhcC-CCCCHHH
Q psy2869 96 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWK---ATAMGRNYVNGKTFLEKRYS-EDLELDD 171 (352)
Q Consensus 96 a~~l~~~~~~~~~~~~~rP~~v~~ivaG~D~~gp~Ly~iDp~G~~~~~~---~~a~G~gs~~~~~~Le~~~~-~~~s~~e 171 (352)
.+.++.+.+.++++.+.||++ ++++|+| +|+||.+||+|++.+++ ++|+|+|+++++++||+.|+ ++||.+
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~~--~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~- 146 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKLE--AMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH- 146 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGCC--CEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH-
T ss_pred HHHHHHHHHHHHhccCcCcce--EEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH-
Confidence 444455555666666678864 6777887 79999999999999988 99999999999999999999 999955
Q ss_pred HHHHHHHHHHHhhccC-CCCCceEEEEEe
Q psy2869 172 AVHTAILTLKEGFEGQ-MTAENIEIGIAD 199 (352)
Q Consensus 172 ai~l~~~~l~~~~~~d-~~~~~iei~ii~ 199 (352)
+++++||..+.+|| .++++++|++|+
T Consensus 147 --~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 --EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp --HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred --HHHHHHHHHHHHhccccCCceEEEEec
Confidence 79999999999999 899999999985
No 49
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.1e-27 Score=220.10 Aligned_cols=121 Identities=34% Similarity=0.452 Sum_probs=117.4
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.||++.|++.+|.++.+|+++++++||++.+|+.|++++|.||++++.|||+|++||+|||++||+||++||+|+
T Consensus 81 ~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~ 160 (264)
T 3h4p_A 81 ATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGA 160 (264)
T ss_dssp EEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCC
T ss_pred EeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCce
Confidence 56999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+.|+++|+..+|.++|.++|
T Consensus 161 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al 201 (264)
T 3h4p_A 161 LIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITAL 201 (264)
T ss_dssp CEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHH
T ss_pred EEecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988763
No 50
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.93 E-value=5e-27 Score=217.77 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=117.2
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.+|++.|++.+|.++.+|+++++++||++.+|++|++++|.||++++.|||+|++||+|||++||+||++||+|+
T Consensus 77 ~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~ 156 (288)
T 3nzj_F 77 VYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGS 156 (288)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSC
T ss_pred EecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHh---hcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKR---EKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~---~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+. |+++|+..++.++|.++|
T Consensus 157 ~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al 200 (288)
T 3nzj_F 157 YWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 200 (288)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHH
T ss_pred EEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999987764
No 51
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.93 E-value=6.1e-27 Score=211.68 Aligned_cols=120 Identities=23% Similarity=0.253 Sum_probs=116.2
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.||++.|.+.++.++.+|+.+++++||++.+++.+++++|.|||+++.|||++++|++|||++||+||++||+|+
T Consensus 72 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~ 151 (233)
T 1ryp_F 72 SLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGN 151 (233)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSC
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCC
Confidence 66999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcC--CC--CCcccccccccc
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKL--RV--PNFCGYHIAESL 351 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~--~~--~~~~~~~~~~~~ 351 (352)
+.++++.|+|+|++.|+++||+.|++ +| +.+++.+++.++
T Consensus 152 ~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~a 195 (233)
T 1ryp_F 152 VTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEA 195 (233)
T ss_dssp EEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHH
T ss_pred eeeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 99 999999888765
No 52
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.93 E-value=5.1e-27 Score=213.52 Aligned_cols=121 Identities=26% Similarity=0.269 Sum_probs=116.6
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.+||+.+|++.|++.+|.++.+|+++++++||++.+|+.|++++|.||++++.|||+|++||+|||+ +||+||++||+|
T Consensus 73 ~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G 152 (243)
T 1ryp_A 73 VVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAG 152 (243)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTS
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCC
Confidence 5599999999999999999999999999999999999999999999999999999999999999997 789999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcC-------CCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKL-------RVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~-------~~~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+.|++ +|+..+|.+++.++|
T Consensus 153 ~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al 201 (243)
T 1ryp_A 153 YYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHM 201 (243)
T ss_dssp CEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHH
T ss_pred CEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999987763
No 53
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.93 E-value=6.5e-27 Score=213.40 Aligned_cols=121 Identities=34% Similarity=0.534 Sum_probs=116.6
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEe-CCCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d-~~gp~ly~~dp~G 310 (352)
.+||+.+|++.|.+.++.++.+|+.+++++||++.+++.+++++|.||++++.|||+|++||+||| ++||+||.+||+|
T Consensus 72 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G 151 (248)
T 1iru_D 72 AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSG 151 (248)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTS
T ss_pred EEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCC
Confidence 559999999999999999999999999999999999999999999999999999999999999999 6789999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCC--CCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRV--PNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~--~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+.|+++| +..+|.+++.++|
T Consensus 152 ~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al 195 (248)
T 1iru_D 152 TYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKAL 195 (248)
T ss_dssp CEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHH
T ss_pred cEEEeeEEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999988763
No 54
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.93 E-value=1.7e-26 Score=208.80 Aligned_cols=121 Identities=32% Similarity=0.492 Sum_probs=117.3
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.+|++.|.+.++.++.+|+.+++++||++.+|+.+++++|.||++++.|||++++|++|||++||+||.+||+|+
T Consensus 77 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~ 156 (233)
T 1yar_A 77 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGT 156 (233)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCC
T ss_pred EEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCC
Confidence 66999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+.|+++|+.++|.+++.+++
T Consensus 157 ~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al 197 (233)
T 1yar_A 157 INEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKAL 197 (233)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred EEeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988753
No 55
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.93 E-value=1.9e-26 Score=208.44 Aligned_cols=121 Identities=58% Similarity=0.869 Sum_probs=117.1
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.+|++.|.+.++.++.+|+.+++++||++.+++.+++++|.||++++.|||++++|++|||++||+||.+||+|+
T Consensus 74 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~ 153 (233)
T 1iru_B 74 VYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGA 153 (233)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSC
T ss_pred EEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+.|+++|+.++|.+++.+++
T Consensus 154 ~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al 194 (233)
T 1iru_B 154 YFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTL 194 (233)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred EEEeeEEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987753
No 56
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.93 E-value=2.2e-26 Score=211.52 Aligned_cols=121 Identities=24% Similarity=0.349 Sum_probs=117.0
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.+|++.|.+.++.++.+|+++++++||++.+++.+++++|.|||+++.|||+|++||+|||++||+||++||+|+
T Consensus 73 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~ 152 (263)
T 1iru_F 73 SIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSAN 152 (263)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSC
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcC--CCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKL--RVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~--~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+.|++ +|+.+++.+++.++|
T Consensus 153 ~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al 195 (263)
T 1iru_F 153 YFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRAL 195 (263)
T ss_dssp EEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred EEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998 999999999987653
No 57
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.93 E-value=3.3e-26 Score=208.25 Aligned_cols=121 Identities=34% Similarity=0.517 Sum_probs=116.9
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEe-CCCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d-~~gp~ly~~dp~G 310 (352)
.+||+.+|++.|++.++.++.+|+.+++++||++.+++.+++++|.||++++.|||++++|++||| ++||+||.+||+|
T Consensus 75 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G 154 (244)
T 1ryp_C 75 AVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSG 154 (244)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTC
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCc
Confidence 569999999999999999999999999999999999999999999999999999999999999999 6789999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+.|+++|+.++|.+++.++|
T Consensus 155 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al 196 (244)
T 1ryp_C 155 NYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTL 196 (244)
T ss_dssp CEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred cEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987653
No 58
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.93 E-value=3.5e-26 Score=207.99 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=116.7
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.+|++.|.+.++.++.+|+.+++++||++.+++.|++++|.||++++.|||++++|++|||++||+||++||+|+
T Consensus 73 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~ 152 (244)
T 1ryp_G 73 VYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGS 152 (244)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSC
T ss_pred EEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCC
Confidence 66999999999999999999999999999999999999999999999999989999999999999988999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHh---hcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKR---EKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~---~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+. |+++|+.++|.+++.++|
T Consensus 153 ~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al 196 (244)
T 1ryp_G 153 YWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 196 (244)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHH
T ss_pred EEEeeEEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999997 999999999999987753
No 59
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.92 E-value=1.6e-26 Score=210.23 Aligned_cols=153 Identities=16% Similarity=0.107 Sum_probs=127.7
Q ss_pred ceEEEEEeCCCeEEcChhHHHHHHhhC-ccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcC-CCCCHHHHHH
Q psy2869 192 NIEIGIADENGFRRLDVATVRDHLSNI-PQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVAT-ENIPTQQLVQ 269 (352)
Q Consensus 192 ~iei~ii~~~g~~~l~~~ei~~~l~~i-~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~ 269 (352)
.--|++..++|+-.-.+.. ..-.++| +.+.++.+ .++|+.+|++.|.+.++.+++.|+++++ ++||++.|++
T Consensus 28 tT~vgi~~kdgVVlaadkr-~~~~~KI~~I~d~i~~-----~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~ 101 (248)
T 3mi0_A 28 KSVVALAYAGGVLFVAENP-SRSLQKISELYDRVGF-----AAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLAN 101 (248)
T ss_dssp CCEEEEEETTEEEEEEECC-CSSSCSEEEEETTEEE-----EEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred CcEEEEEeCCEEEEEEeCC-CCCCCCeEEECCCEEE-----EEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 4557777777742221111 1123333 33444444 5599999999999999999999999999 9999999999
Q ss_pred HHH-HHHHHhhhcCCccccceeeEEEEEeC----CCCeEEEECCCCceec-eeEEEecCCchHHHHHHHHhhcCCCCCcc
Q psy2869 270 RVA-AIMQEYTQSGGVRPFGVSLLICGWDN----KRPYLYQCDPSGAYFA-WKATAMGRNYVNGKTFLEKREKLRVPNFC 343 (352)
Q Consensus 270 ~ls-~~~q~~t~~~~~RP~g~~~ll~G~d~----~gp~ly~~dp~G~~~~-~~~~a~G~~s~~a~~~Le~~~~~~~~~~~ 343 (352)
.|+ .+.|.||| +.|||||++||+|||+ +||+||++||+|++.+ |++.|+|+|++.|+++||++|+++|+..+
T Consensus 102 ~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~ee 179 (248)
T 3mi0_A 102 VYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTD 179 (248)
T ss_dssp HHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHH
Confidence 999 88999998 7899999999999998 7899999999999995 99999999999999999999999999999
Q ss_pred ccccccccC
Q psy2869 344 GYHIAESLI 352 (352)
Q Consensus 344 ~~~~~~~~~ 352 (352)
+.++|.++|
T Consensus 180 ai~la~~aL 188 (248)
T 3mi0_A 180 ALRIAVAAL 188 (248)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987764
No 60
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.92 E-value=5.4e-26 Score=206.46 Aligned_cols=121 Identities=36% Similarity=0.524 Sum_probs=116.8
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC--CCCeEEEECCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN--KRPYLYQCDPS 309 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~--~gp~ly~~dp~ 309 (352)
.+||+.||++.|.+.++.++.+|+.+++++||++.+|+.+++++|.||++++.|||++++|++|||+ +||+||.+||+
T Consensus 72 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~ 151 (241)
T 1ryp_D 72 SFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPS 151 (241)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTT
T ss_pred EEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCC
Confidence 5699999999999999999999999999999999999999999999999999999999999999998 78999999999
Q ss_pred CceeceeEEEecCCchHHHHHHHHhh---cCCCCCccccccccccC
Q psy2869 310 GAYFAWKATAMGRNYVNGKTFLEKRE---KLRVPNFCGYHIAESLI 352 (352)
Q Consensus 310 G~~~~~~~~a~G~~s~~a~~~Le~~~---~~~~~~~~~~~~~~~~~ 352 (352)
|++.++++.|+|+|++.|+++||+.| +++|+..+|.+++.+++
T Consensus 152 G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al 197 (241)
T 1ryp_D 152 GIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSL 197 (241)
T ss_dssp SCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHH
T ss_pred CCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999988763
No 61
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.92 E-value=4e-26 Score=208.81 Aligned_cols=121 Identities=27% Similarity=0.362 Sum_probs=116.5
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEe-CCCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d-~~gp~ly~~dp~G 310 (352)
.+||+.||++.|.+.++.++.+|+++++++||++.+++.+++++|.||++++.|||+|++||+||| ++||+||++||+|
T Consensus 76 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G 155 (254)
T 1iru_G 76 AVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSG 155 (254)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTC
T ss_pred EEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCC
Confidence 569999999999999999999999999999999999999999999999999999999999999999 6789999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+.|+++|+..+|.++|.++|
T Consensus 156 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al 197 (254)
T 1iru_G 156 VSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKII 197 (254)
T ss_dssp CEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred CEEeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887653
No 62
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.92 E-value=7.3e-26 Score=206.24 Aligned_cols=121 Identities=29% Similarity=0.429 Sum_probs=116.7
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.+||+.||++.|.+.++.++.+|+.+++++||++.+++.+++++|.||++++.|||+|++|++|||+ +||+||.+||+|
T Consensus 79 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G 158 (246)
T 1iru_A 79 VMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAG 158 (246)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTS
T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCe
Confidence 5699999999999999999999999999999999999999999999999999999999999999997 789999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcC--CCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKL--RVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~--~~~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+.|++ +|+.++|.+++.++|
T Consensus 159 ~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al 202 (246)
T 1iru_A 159 YYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCL 202 (246)
T ss_dssp CEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHH
T ss_pred eEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999987763
No 63
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.92 E-value=7.9e-26 Score=205.98 Aligned_cols=120 Identities=32% Similarity=0.437 Sum_probs=116.2
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.||++.|.+.++.++.+|++++++++|++.+++.+++++|.||++++.|||++++|++|+| +||+||.+||+|+
T Consensus 77 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~ 155 (246)
T 1j2p_A 77 ATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGA 155 (246)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCC
T ss_pred EEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCce
Confidence 669999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+.|+++|+..+|.+++.+++
T Consensus 156 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al 196 (246)
T 1j2p_A 156 LLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAM 196 (246)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred EEeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987653
No 64
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.92 E-value=5.7e-26 Score=206.46 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=116.5
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCC------ccccceeeEEEEEe-CCCCeEE
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGG------VRPFGVSLLICGWD-NKRPYLY 304 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~------~RP~g~~~ll~G~d-~~gp~ly 304 (352)
.+||+.+|++.|.+.++.++.+|+.+++++||++.+++.+++++|.||++++ .|||++++|++||| ++||+||
T Consensus 69 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly 148 (242)
T 1ryp_E 69 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLF 148 (242)
T ss_dssp EEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEE
T ss_pred EEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEE
Confidence 6699999999999999999999999999999999999999999999999998 99999999999999 6789999
Q ss_pred EECCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 305 QCDPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 305 ~~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
.+||+|++.++++.|+|+|++.|+++||+.|+++|+..+|.+++.++|
T Consensus 149 ~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al 196 (242)
T 1ryp_E 149 HAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKIL 196 (242)
T ss_dssp EECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred EECCCCCEeccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987753
No 65
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.92 E-value=1.2e-25 Score=206.58 Aligned_cols=121 Identities=37% Similarity=0.518 Sum_probs=116.5
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.+||+.+|++.|++.++.++.+|+++++++||++.+++.+++++|.||++++.|||+|++|++|||+ +||+||.+||+|
T Consensus 75 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G 154 (261)
T 1iru_C 75 SVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSG 154 (261)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTT
T ss_pred EEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCc
Confidence 5699999999999999999999999999999999999999999999999999999999999999995 689999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcC-CCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKL-RVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~-~~~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+.|++ +|+..+|.+++.++|
T Consensus 155 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al 197 (261)
T 1iru_C 155 NYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVL 197 (261)
T ss_dssp EEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHH
T ss_pred eEEeeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999987653
No 66
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.92 E-value=7.7e-26 Score=205.47 Aligned_cols=121 Identities=21% Similarity=0.332 Sum_probs=116.9
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCC-----ccccceeeEEEEEeCCCCeEEEE
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGG-----VRPFGVSLLICGWDNKRPYLYQC 306 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~-----~RP~g~~~ll~G~d~~gp~ly~~ 306 (352)
.+||+.||++.|.+.++.++.+|+.++++++|++.+++.+++++|.||++++ .|||++++|++|+|++||+||.+
T Consensus 77 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~i 156 (241)
T 1iru_E 77 AMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHM 156 (241)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEE
T ss_pred EEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence 6699999999999999999999999999999999999999999999999988 89999999999999888999999
Q ss_pred CCCCceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 307 DPSGAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 307 dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
||+|++.++++.|+|+|++.|+++||+.|+++|+.++|.+++.+++
T Consensus 157 dp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al 202 (241)
T 1iru_E 157 DPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIIL 202 (241)
T ss_dssp CTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988753
No 67
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.91 E-value=2.4e-25 Score=196.91 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=111.6
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.+|++.|.+.++.++.+|+.+++++||++.+++.+++.+|.++ .|||++++|++|||++||+||.+||+|+
T Consensus 44 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~r----~rp~~~~~lvaG~D~~gp~Ly~id~~G~ 119 (202)
T 1j2q_H 44 TTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYR----YFPYLVQLLIGGIDSEGKSIYSIDPIGG 119 (202)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTT----TSCCCEEEEEEEEETTEEEEEEECTTCC
T ss_pred EecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhC----CCCceEEEEEEEEeCCCCEEEEECCCCC
Confidence 569999999999999999999999999999999999999999998864 7899999999999988999999999999
Q ss_pred eecee-EEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWK-ATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~-~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.+++ +.|+|+|++.|+++||+.|+++|+..+|.+++.+++
T Consensus 120 ~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~al 161 (202)
T 1j2q_H 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAI 161 (202)
T ss_dssp EEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred eeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999987653
No 68
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.91 E-value=6.4e-25 Score=196.30 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=110.8
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.+|++.|.+.++.++.+|+.+++++||++.+++.+++.+|.++ .|||++++|++||| +||+||.+||+|+
T Consensus 52 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r----~rp~~v~~lvaG~D-~gp~Ly~idp~G~ 126 (217)
T 1yar_H 52 TIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVK----YMPYMVQLLVGGID-TAPHVFSIDAAGG 126 (217)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTT----TSCCCEEEEEEEES-SSEEEEEECTTCC
T ss_pred EeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcC----CCCceEEEEEEEEC-CCCEEEEECCCCC
Confidence 569999999999999999999999999999999999999999998864 78999999999999 8999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+.|+++|+.++|.+++.+++
T Consensus 127 ~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al 167 (217)
T 1yar_H 127 SVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAI 167 (217)
T ss_dssp EEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred eEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987653
No 69
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.91 E-value=5.5e-25 Score=193.95 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=111.7
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC--CCCeEEEECCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN--KRPYLYQCDPS 309 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~--~gp~ly~~dp~ 309 (352)
.+||+.+|++.|.+.++.++.+|+.++++++|++.+++.+++.+|.+++. ++||++++|++|||+ +||+||.+||+
T Consensus 45 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~ 122 (198)
T 1ryp_K 45 SFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYL 122 (198)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTT
T ss_pred EeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCC
Confidence 56999999999999999999999999999999999999999999998853 349999999999996 68999999999
Q ss_pred CceeceeEEEecCCchHHHHHHHHhhcCCCCCcccccccccc
Q psy2869 310 GAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351 (352)
Q Consensus 310 G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~ 351 (352)
|++.++++.|+|+|++.|+++||+.|+++|+.++|.+++.++
T Consensus 123 G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~~~a 164 (198)
T 1ryp_K 123 GTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLC 164 (198)
T ss_dssp CCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998765
No 70
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.91 E-value=7.3e-25 Score=194.10 Aligned_cols=117 Identities=17% Similarity=0.251 Sum_probs=112.1
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.||++.|.+.++.++.+|+.+++++||++.+++.+++.+|.+|++ ||++++|++|||++||+||.+||+|+
T Consensus 44 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~~----~~~v~~lvaG~D~~gp~Ly~idp~G~ 119 (204)
T 1iru_L 44 TMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGM----GLSMGTMICGWDKRGPGLYYVDSEGN 119 (204)
T ss_dssp ECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTS----CCCBEEEEEEECSSSEEEEEEESSSC
T ss_pred EccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCC----CeeEEEEEEEEeCCCCEEEEECCCCc
Confidence 56999999999999999999999999999999999999999999999864 89999999999998999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||++|+++|+.++|.+++.+++
T Consensus 120 ~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al 160 (204)
T 1iru_L 120 RISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAI 160 (204)
T ss_dssp EEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred EEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987753
No 71
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=6.7e-25 Score=196.41 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=111.5
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.+||+.||++.|.+.++.++.+|+++++++||++.+++.|++++|.++ .|||++++||+|||+ +||+||.+||+|
T Consensus 45 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~----~~P~~v~~lvaG~D~~~gp~Ly~idp~G 120 (219)
T 3h4p_a 45 TIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSR----MFPFLTQIIIGGYDLLEGAKLFSLDPLG 120 (219)
T ss_dssp ECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHTT----TTTCCCCCEEEEEETTTEEEEEEECSSC
T ss_pred EeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhc----CCCceEEEEEEEEeCCCCcEEEEECCCC
Confidence 569999999999999999999999999999999999999999999874 589999999999998 789999999999
Q ss_pred ceecee-EEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAWK-ATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~-~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.+++ +.|+|+|++.|+++||+.|+++|+..+|.++|.++|
T Consensus 121 ~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al 163 (219)
T 3h4p_a 121 GMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNAL 163 (219)
T ss_dssp CEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHH
T ss_pred ceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 999999 999999999999999999999999999999988763
No 72
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.91 E-value=8.1e-25 Score=199.75 Aligned_cols=121 Identities=45% Similarity=0.604 Sum_probs=116.3
Q ss_pred cccCCccchhHHHHHHHHHHhh-hhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFR-RLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPS 309 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~ 309 (352)
.+||+.||++.|.+.++.++.. |+..++++++++.+++.+++++|.++++++.|||++++|++|||+ +||+||.+||+
T Consensus 74 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~ 153 (250)
T 1ryp_B 74 VYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPS 153 (250)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTT
T ss_pred EeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCC
Confidence 6699999999999999999999 999999999999999999999999999999999999999999997 58999999999
Q ss_pred CceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 310 GAYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 310 G~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
|++.++++.|+|+|++.|+++||+.|+++|+.++|.++|.+++
T Consensus 154 G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al 196 (250)
T 1ryp_B 154 GSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTL 196 (250)
T ss_dssp SCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988753
No 73
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.91 E-value=6.2e-25 Score=198.69 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=114.4
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCC-C-----CeEEE
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-R-----PYLYQ 305 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~-g-----p~ly~ 305 (352)
.+||+.||++.|.+.++.++.+|+++++++||++.+++.|++++|.+++++ .|||+|++||+|||++ | |+||.
T Consensus 44 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~ 122 (235)
T 1q5q_H 44 GIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVS 122 (235)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEE
T ss_pred EcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEE
Confidence 569999999999999999999999999999999999999999999999885 8999999999999976 7 99999
Q ss_pred ECCCCceece--eEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 306 CDPSGAYFAW--KATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 306 ~dp~G~~~~~--~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+||+|++.++ ++.|+|+|++.|+++||+.|+++|+.++|.++|.++|
T Consensus 123 idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al 171 (235)
T 1q5q_H 123 YDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESL 171 (235)
T ss_dssp ECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred ECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999999987653
No 74
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.90 E-value=1.3e-24 Score=193.59 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=112.2
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEe-CCCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d-~~gp~ly~~dp~G 310 (352)
.+||+.+|++.|.+.++.++.+|+++++++||++.+++.+++++|.||++ ||++++|++||| ++||+||.+||+|
T Consensus 44 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G 119 (212)
T 1ryp_L 44 TMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDG 119 (212)
T ss_dssp ECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTC
T ss_pred EccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCc
Confidence 66999999999999999999999999999999999999999999999986 899999999999 5689999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+.|+++|+.++|.+++.++|
T Consensus 120 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al 161 (212)
T 1ryp_L 120 TRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSI 161 (212)
T ss_dssp CEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred eeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987653
No 75
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.90 E-value=1.3e-24 Score=196.14 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=110.5
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.||++.|.+.++.++++|+++++++|+++.+++.+++.++.| .|||++++|++|+|++||+||++||+|+
T Consensus 44 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~llvaG~D~~gp~Ly~idp~G~ 118 (234)
T 3unf_H 44 CGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY-----QGHVGASLVVGGVDLNGPQLYEVHPHGS 118 (234)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSC
T ss_pred EecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhc-----CCCccEEEEEEEEeCCCCEEEEECCCCC
Confidence 55999999999999999999999999999999999999999999875 3699999999999998999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+.|+++|+.++|.++|.++|
T Consensus 119 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al 159 (234)
T 3unf_H 119 YSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAI 159 (234)
T ss_dssp EEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred EEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988763
No 76
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.90 E-value=1.3e-24 Score=192.61 Aligned_cols=116 Identities=9% Similarity=0.039 Sum_probs=111.4
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.+||+.+|++.|.+.++.++.+|+++++++||++.+++.+++++|.||+ ||++++|++|||+ +||+||.+||+|
T Consensus 44 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G 118 (205)
T 1iru_H 44 CRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGG 118 (205)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTS
T ss_pred EcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCC
Confidence 5699999999999999999999999999999999999999999999987 9999999999997 689999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.++++.++|+|++.|+++||+.|+++|+.++|.+++.++|
T Consensus 119 ~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al 160 (205)
T 1iru_H 119 MMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 160 (205)
T ss_dssp CCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred cEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987753
No 77
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.90 E-value=2.4e-24 Score=193.19 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=110.7
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.||++.|.+.++.++.+|+++++++|+++.+++.+++.++.| .|||++++|++|+|++||+||.+||+|+
T Consensus 44 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~p~~v~~lvaG~D~~gp~Ly~idp~G~ 118 (222)
T 1ryp_I 44 AGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGS 118 (222)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSC
T ss_pred EecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-----CCCCCeeEEEEEEeCCCCEEEEECCCCC
Confidence 56999999999999999999999999999999999999999998775 4799999999999998999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+.|+++|+.++|.++|.++|
T Consensus 119 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al 159 (222)
T 1ryp_I 119 TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAI 159 (222)
T ss_dssp EEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred EEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997763
No 78
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.90 E-value=1.3e-24 Score=194.64 Aligned_cols=119 Identities=11% Similarity=0.111 Sum_probs=112.2
Q ss_pred cccCCccchhHHHHHHHHHHhhhhh-hcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLD-VATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G 310 (352)
.+||+.||++.|.+.+|.++..|+. +++++||++.+++.+++.++ ++.++.|||++++|++|+|++||+||.+||+|
T Consensus 52 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly--~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G 129 (219)
T 1iru_N 52 GASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMY--SRRSKMNPLWNTMVIGGYADGESFLGYVDMLG 129 (219)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHH--HHHHTTCCCCEEEEEEEEETTEEEEEEECSSC
T ss_pred EeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HhcccCCCceEEEEEEEEECCCCEEEEECCCC
Confidence 5699999999999999999999998 99999999999999999985 45567899999999999998899999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcC--CCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKL--RVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~--~~~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+.|++ +|+.++|.++++++|
T Consensus 130 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al 173 (219)
T 1iru_N 130 VAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCM 173 (219)
T ss_dssp CEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHH
T ss_pred CeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999988763
No 79
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.89 E-value=1.1e-24 Score=199.61 Aligned_cols=153 Identities=12% Similarity=0.070 Sum_probs=126.2
Q ss_pred ceEEEEEeCCCeEEcChhHHHHHHhhC-ccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcC-CCCCHHHHHH
Q psy2869 192 NIEIGIADENGFRRLDVATVRDHLSNI-PQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVAT-ENIPTQQLVQ 269 (352)
Q Consensus 192 ~iei~ii~~~g~~~l~~~ei~~~l~~i-~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~ 269 (352)
.--|++..++|+-...+.. ..-.++| +.+.++.+ .+||+.+|++.|.+.++.++..|+++++ ++||++.+++
T Consensus 28 tt~vgi~~~dgVVlaaD~r-s~~~~KI~~I~d~i~~-----~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~ 101 (259)
T 1q5q_A 28 RSVVVLTFRDGVLFVAENP-STALHKVSELYDRLGF-----AAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLAN 101 (259)
T ss_dssp CCEEEEECSSEEEEEECCS-CSSSCSEEEEETTEEE-----EEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred CcEEEEEeCCEEEEEEecC-CCCcCcEEEeCCCEEE-----EEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHH
Confidence 5567777777742222211 1122333 23333333 5699999999999999999999999998 4999999999
Q ss_pred HHHH-HHHHhhhcCCccccceeeEEEEEe----CCCCeEEEECCCCcee-ceeEEEecCCchHHHHHHHHhhcCCCCCcc
Q psy2869 270 RVAA-IMQEYTQSGGVRPFGVSLLICGWD----NKRPYLYQCDPSGAYF-AWKATAMGRNYVNGKTFLEKREKLRVPNFC 343 (352)
Q Consensus 270 ~ls~-~~q~~t~~~~~RP~g~~~ll~G~d----~~gp~ly~~dp~G~~~-~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~ 343 (352)
.|++ +.|.|| ++.|||+|++||+||| ++||+||++||+|++. ++++.|+|+|++.|+++||++|+++|+..+
T Consensus 102 ~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~ee 179 (259)
T 1q5q_A 102 AYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEA 179 (259)
T ss_dssp HHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHH
Confidence 9999 788899 4789999999999999 6789999999999999 889999999999999999999999999999
Q ss_pred ccccccccC
Q psy2869 344 GYHIAESLI 352 (352)
Q Consensus 344 ~~~~~~~~~ 352 (352)
|.+++.++|
T Consensus 180 a~~la~~al 188 (259)
T 1q5q_A 180 AVGIAVNAL 188 (259)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987763
No 80
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.89 E-value=6e-24 Score=189.41 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=109.1
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCC-CeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~g-p~ly~~dp~G 310 (352)
.+||+.||++.|.+.++.++.+|+.+++++||++.+++.|++.+ |++. .|||++++|++|||++| |+||.+||+|
T Consensus 53 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G 128 (213)
T 1iru_M 53 GCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVG 128 (213)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTS
T ss_pred EccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCC
Confidence 56999999999999999999999999999999999999999998 5554 69999999999999765 9999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHh---------hcCCCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKR---------EKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~---------~~~~~~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+. |+++|+.++|.+++.++|
T Consensus 129 ~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al 179 (213)
T 1iru_M 129 SYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVF 179 (213)
T ss_dssp CEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHH
T ss_pred CEEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999 778899999999987653
No 81
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.89 E-value=9.7e-24 Score=193.20 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=109.9
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.||++.|.+.++.++.+|+++++++++++.+++.+++.++.| .|||++++||+|||++||+||++||+|+
T Consensus 73 ~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~Gp~Ly~iDp~G~ 147 (261)
T 3nzj_H 73 AGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGS 147 (261)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSC
T ss_pred EeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCCCCEEEEECCCcc
Confidence 55999999999999999999999999999999999999999988654 4799999999999998999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+.|+++|+.++|.+++.++|
T Consensus 148 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la~~al 188 (261)
T 3nzj_H 148 TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAI 188 (261)
T ss_dssp EEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred EEecCeEEeccchHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
No 82
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.89 E-value=8.7e-24 Score=196.53 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=114.2
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCC-C-----CeEEE
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-R-----PYLYQ 305 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~-g-----p~ly~ 305 (352)
.+||+.+|++.|++.++.++.+|+++++++|+++.+++.|++++|.+++++ .|||+|++||+|||++ | |+||+
T Consensus 109 ~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~ 187 (294)
T 1q5r_H 109 GIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVS 187 (294)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEE
T ss_pred EEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEE
Confidence 569999999999999999999999999999999999999999999999875 8999999999999975 6 99999
Q ss_pred ECCCCceece--eEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 306 CDPSGAYFAW--KATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 306 ~dp~G~~~~~--~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+||+|++.++ ++.|+|+|++.|+++||+.|+++|+.++|.+++.++|
T Consensus 188 iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~ms~eEAi~la~~aL 236 (294)
T 1q5r_H 188 YDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESL 236 (294)
T ss_dssp ECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred ECCCCeEEecCCCeEEEecCcHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999999987653
No 83
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.89 E-value=1.4e-23 Score=189.54 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=110.4
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.||++.|.+.++.++.+|+++++++++++.+++.+++.+|.|+ +||++++|++|||++||+||.+||+|+
T Consensus 44 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-----~~~~v~llvaG~D~~gp~Ly~idp~G~ 118 (234)
T 1iru_I 44 CGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYR-----GYIGAALVLGGVDVTGPHLYSIYPHGS 118 (234)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTT-----TCSCEEEEEEEECSSCEEEEEECTTSC
T ss_pred EecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC-----CCCceeEEEEEEcCCCCEEEEECCCCC
Confidence 569999999999999999999999999999999999999999998763 599999999999998999999999999
Q ss_pred eeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 312 YFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 312 ~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
+.++++.|+|+|++.|+++||+.|+++|+.++|.++|.++|
T Consensus 119 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al 159 (234)
T 1iru_I 119 TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAI 159 (234)
T ss_dssp EEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHH
T ss_pred EEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998763
No 84
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.89 E-value=1e-23 Score=195.45 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=112.3
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEe-CCCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d-~~gp~ly~~dp~G 310 (352)
.+||+.||++.|.+.++.++++|+++++++|+++.+++.+++++|.+|++ ||++++||+||| ++||+||++||+|
T Consensus 119 ~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~----p~~v~~lvaG~D~~~gp~Ly~iDp~G 194 (287)
T 3nzj_K 119 TMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDG 194 (287)
T ss_dssp ECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTS----CCCEEEEEEEEETTTEEEEEEEETTC
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCC----CceEEEEEEEEcCCCCCEEEEECCCc
Confidence 56999999999999999999999999999999999999999999999985 999999999999 5689999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+.|+++|+.++|.++|+++|
T Consensus 195 ~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL 236 (287)
T 3nzj_K 195 TRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSI 236 (287)
T ss_dssp CEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHH
T ss_pred eEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 85
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.88 E-value=5.9e-24 Score=192.06 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=111.7
Q ss_pred cccCCccchhHHHHHHHHHHhhhhh-----hcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCC-CCeEEE
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLD-----VATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQ 305 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~-----~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~-gp~ly~ 305 (352)
.+||+.||++.|.+.++.++..|+. +++++||++.+++.+++.+ |++.++.|||++++|++|+|++ ||+||.
T Consensus 52 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~ 129 (233)
T 1ryp_N 52 GISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRY 129 (233)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEE
T ss_pred EccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEE
Confidence 5699999999999999999999999 9999999999999999998 4455678999999999999975 899999
Q ss_pred ECCCCceeceeEEEecCCchHHHHHHHHhhcC-----CCCCccccccccccC
Q psy2869 306 CDPSGAYFAWKATAMGRNYVNGKTFLEKREKL-----RVPNFCGYHIAESLI 352 (352)
Q Consensus 306 ~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~-----~~~~~~~~~~~~~~~ 352 (352)
+||+|++.++++.|+|+|++.|+++||+.|++ +|+.++|.++++++|
T Consensus 130 id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al 181 (233)
T 1ryp_N 130 VNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAM 181 (233)
T ss_dssp EETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHH
T ss_pred ECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999987753
No 86
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.88 E-value=1.8e-23 Score=185.09 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=108.6
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC--CCCeEEEECCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN--KRPYLYQCDPS 309 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~--~gp~ly~~dp~ 309 (352)
.+||+.+|++.|.+.++.++.+|+++++++||++.+++.+++.+ |++.++ ||++++|++|||+ +||+||.+||+
T Consensus 51 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~~~~--P~~v~~lvaG~D~~~~gp~Ly~idp~ 126 (204)
T 1ryp_J 51 GITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSL--YERRFG--PYFVGPVVAGINSKSGKPFIAGFDLI 126 (204)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HTTTTS--CCCEEEEEEEECTTTCCEEEEEECTT
T ss_pred EeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH--HHhcCC--CceEEEEEEEEeCCCCceEEEEECCC
Confidence 67999999999999999999999999999999999999999999 776644 9999999999996 68999999999
Q ss_pred CceeceeE-EEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 310 GAYFAWKA-TAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 310 G~~~~~~~-~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
|++.+++. .|+|+|++.|+++||+.|+++|+.++|.+++.+++
T Consensus 127 G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al 170 (204)
T 1ryp_J 127 GCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQAL 170 (204)
T ss_dssp CCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred CCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHHHHHHHH
Confidence 99977755 99999999999999999999999999999987753
No 87
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.88 E-value=1.7e-23 Score=185.49 Aligned_cols=115 Identities=9% Similarity=0.053 Sum_probs=109.9
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.+||+.+|++.|.+.++.++.+|+.++++ +|++.+++.+++++|.||+. |++++|++|||+ +||+||.+||+|
T Consensus 53 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G 126 (205)
T 1ryp_H 53 CRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGG 126 (205)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTS
T ss_pred EccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCc
Confidence 56999999999999999999999999999 99999999999999999874 999999999997 689999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+.|+++|+.++|.+++.+++
T Consensus 127 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al 168 (205)
T 1ryp_H 127 SVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSL 168 (205)
T ss_dssp CCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred cEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987753
No 88
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.88 E-value=2.8e-23 Score=184.05 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=108.1
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC--CCCeEEEECCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN--KRPYLYQCDPS 309 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~--~gp~ly~~dp~ 309 (352)
.+||+.||++.|.+.++.++.+|+++++++||++.+++.+++.+ |++.+ .||++++|++|||+ +||+||.+||+
T Consensus 52 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r~--~P~~v~~lvaG~D~~~~~p~Ly~idp~ 127 (205)
T 1iru_J 52 GLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL--YEKRF--GPYYTEPVIAGLDPKTFKPFICSLDLI 127 (205)
T ss_dssp ECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHH--HTTTT--SCCSCCCEEEEECTTSCCEEEEEECTT
T ss_pred EccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCCeEEEEECCC
Confidence 56999999999999999999999999999999999999999999 66653 39999999999995 68999999999
Q ss_pred CceeceeE-EEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 310 GAYFAWKA-TAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 310 G~~~~~~~-~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
|++.++++ .|+|+|++.|+++||+.|+++|+.++|.+++.++|
T Consensus 128 G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al 171 (205)
T 1iru_J 128 GCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAM 171 (205)
T ss_dssp CCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred CCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 99977755 99999999999999999999999999999987753
No 89
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.88 E-value=3.6e-23 Score=182.77 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=107.6
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.+||+.||++.|.+.++.++.+|++++++++|++.+++.+++.+..+ . ...|||++++|++|||+ +||+||.+||+|
T Consensus 45 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~-~-~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G 122 (201)
T 1iru_K 45 LCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADC-L-RSRTPYHVNLLLAGYDEHEGPALYYMDYLA 122 (201)
T ss_dssp EEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHH-H-TSSSCCCEEEEEEEEETTTEEEEEEECTTC
T ss_pred EeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-H-hcCCCccEEEEEEEEeCCCCeEEEEECCCc
Confidence 55999999999999999999999999999999999999888765211 1 23479999999999997 689999999999
Q ss_pred ceeceeEEEecCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAWKATAMGRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.++++.|+|+|++.|+++||+.|+++|+.++|.+++.+++
T Consensus 123 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al 164 (201)
T 1iru_K 123 ALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCL 164 (201)
T ss_dssp CEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987753
No 90
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.88 E-value=5.7e-23 Score=184.25 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=107.7
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcC-CCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCC-CeEEEECCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVAT-ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPS 309 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~g-p~ly~~dp~ 309 (352)
.+||+.||++.|.+.++.++.+|+++++ ++||++.+|+.+++.++. +. .|||++++|++|||++| |+||.+||+
T Consensus 53 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~--~r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~ 128 (222)
T 1ryp_M 53 SANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYG--KR--FFPYYVHTIIAGLDEDGKGAVYSFDPV 128 (222)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHT--TT--TSCCCEEEEEEEECTTSCEEEEEECTT
T ss_pred EccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh--cC--CCCceEEEEEEEEcCCCCeEEEEECCC
Confidence 5699999999999999999999999999 999999999999999843 22 56999999999999765 999999999
Q ss_pred CceeceeEEEecCCchHHHHHHHHh-----------------hcCCCCCccccccccccC
Q psy2869 310 GAYFAWKATAMGRNYVNGKTFLEKR-----------------EKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 310 G~~~~~~~~a~G~~s~~a~~~Le~~-----------------~~~~~~~~~~~~~~~~~~ 352 (352)
|++.++++.|+|+|++.|+++||+. |+++|+.++|.+++.+++
T Consensus 129 G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al 188 (222)
T 1ryp_M 129 GSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSF 188 (222)
T ss_dssp SCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHH
T ss_pred cCEEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998 778899999999987653
No 91
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.88 E-value=3.4e-23 Score=192.39 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=127.8
Q ss_pred CceEEEEEeCCCeEEcChhHHHH-------HHhhC-ccchHHHHhhccccccCCccchhHHHHHHHHHHhhhhhhcCCCC
Q psy2869 191 ENIEIGIADENGFRRLDVATVRD-------HLSNI-PQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENI 262 (352)
Q Consensus 191 ~~iei~ii~~~g~~~l~~~ei~~-------~l~~i-~~~~~~~~~~l~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 262 (352)
+.--|++..++|+-.-.+..+.. -.+|| +.+.++.+ .+||+.||++.|++.++.++.+|++.++++|
T Consensus 57 GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~-----~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i 131 (291)
T 2jay_A 57 GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT-----GIAGTAAVAVEFARLYAVELEHYEKLEGVPL 131 (291)
T ss_dssp -CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEE-----EEESCHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEE-----EEcccHHHHHHHHHHHHHHHHHhhhhcCCCC
Confidence 45567777777742222222110 12233 23333333 6799999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCC-C-----CeEEEECCCCcee--ceeEEEecCCchHHHHHHHHh
Q psy2869 263 PTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-R-----PYLYQCDPSGAYF--AWKATAMGRNYVNGKTFLEKR 334 (352)
Q Consensus 263 ~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~-g-----p~ly~~dp~G~~~--~~~~~a~G~~s~~a~~~Le~~ 334 (352)
+++.+++.+++++|.+++ .+.|||+|++||+|||++ + |+||++||+|++. ++++.|+|+|++.|+++||+.
T Consensus 132 ~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~ 210 (291)
T 2jay_A 132 TFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKL 210 (291)
T ss_dssp CHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHh
Confidence 999999999999999987 468999999999999975 4 8999999999999 899999999999999999999
Q ss_pred hcCCCCCccccccccccC
Q psy2869 335 EKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~ 352 (352)
|+++|+..+|.++|.++|
T Consensus 211 ~~~~ms~eEAi~la~~aL 228 (291)
T 2jay_A 211 YSQVTDGDSGLRVAVEAL 228 (291)
T ss_dssp GGGCCSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999987763
No 92
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.87 E-value=2.8e-23 Score=191.09 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=111.7
Q ss_pred cccCCccchhHHHHHHHHHHhhhhh-----hcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCC-CCeEEE
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLD-----VATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQ 305 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~-----~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~-gp~ly~ 305 (352)
.+||+.+|++.|++.+|.++..|+. +++++|+++.+++.+++++ |++.++.|||++++||+|+|++ ||+||.
T Consensus 85 ~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~ 162 (266)
T 1g0u_M 85 GISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRY 162 (266)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEE
T ss_pred EeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEE
Confidence 5699999999999999999999998 9999999999999999998 4555678999999999999975 899999
Q ss_pred ECCCCceeceeEEEecCCchHHHHHHHHhhcC-----CCCCccccccccccC
Q psy2869 306 CDPSGAYFAWKATAMGRNYVNGKTFLEKREKL-----RVPNFCGYHIAESLI 352 (352)
Q Consensus 306 ~dp~G~~~~~~~~a~G~~s~~a~~~Le~~~~~-----~~~~~~~~~~~~~~~ 352 (352)
+||+|++.++++.|+|+|++.|+++||+.|++ +|+.++|.++++++|
T Consensus 163 idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al 214 (266)
T 1g0u_M 163 VNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAM 214 (266)
T ss_dssp EETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHH
T ss_pred ECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999988763
No 93
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.85 E-value=3.2e-22 Score=176.33 Aligned_cols=114 Identities=13% Similarity=0.103 Sum_probs=106.1
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeC-CCCeEEEECCCC
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN-KRPYLYQCDPSG 310 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~-~gp~ly~~dp~G 310 (352)
.+||+.+|++.|.+.++.++.+|+++++++||++.+++++++.+|.+ .|||++++|++|+|+ +||+||. |+|
T Consensus 44 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G 116 (199)
T 3unf_N 44 ALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMG 116 (199)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGG
T ss_pred EecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECC
Confidence 56999999999999999999999999999999999999999999865 469999999999997 5799999 999
Q ss_pred ceeceeEEEe-cCCchHHHHHHHHhhcCCCCCccccccccccC
Q psy2869 311 AYFAWKATAM-GRNYVNGKTFLEKREKLRVPNFCGYHIAESLI 352 (352)
Q Consensus 311 ~~~~~~~~a~-G~~s~~a~~~Le~~~~~~~~~~~~~~~~~~~~ 352 (352)
++.+++++++ |+|++.|+++||+.|+++|+.++|.+++.++|
T Consensus 117 ~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al 159 (199)
T 3unf_N 117 GMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAI 159 (199)
T ss_dssp GCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred CceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 9988887774 99999999999999999999999999988763
No 94
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.76 E-value=5.9e-19 Score=151.73 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=91.0
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
.+||+.||++.|.+.++.++.+|+.+ +.+.++++.|.++++.+.|||++++|++ | ||+||.+||+|+
T Consensus 45 ~~aG~~aD~~~l~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~ 111 (171)
T 1m4y_A 45 GFAGSVADAMTLFDRFEAKLREWGGN---------LTKAAVELAKDWRTDRVLRRLEALLLVA--D--KENIFIISGNGE 111 (171)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSC
T ss_pred EeCccHHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHhCCCCceEEEEEEE--c--CCEEEEECCCCC
Confidence 66999999999999999999999854 3666677777888888889999998888 6 899999999999
Q ss_pred eecee--EEEecCCchHHHHHHHHhhc-CCCCCcccccccccc
Q psy2869 312 YFAWK--ATAMGRNYVNGKTFLEKREK-LRVPNFCGYHIAESL 351 (352)
Q Consensus 312 ~~~~~--~~a~G~~s~~a~~~Le~~~~-~~~~~~~~~~~~~~~ 351 (352)
+.+++ +.|+|+|++.|+++||+.|+ ++|+. .++++++
T Consensus 112 ~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l~~~a 151 (171)
T 1m4y_A 112 VIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REIVEKA 151 (171)
T ss_dssp EECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHHHHHH
T ss_pred EEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHHHHHH
Confidence 99998 99999999999999999999 88874 5566544
No 95
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.74 E-value=1.2e-18 Score=151.04 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=88.8
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
++||+.||++.|.++++.++++|+ + .+.+.++++.|.++++.+.|||++++|++ | +|+||.+||+|+
T Consensus 51 ~~aG~~aD~~~l~~~~~~~~~~y~---g------~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d--~p~ly~~d~~G~ 117 (180)
T 2z3b_A 51 GFAGSVADAFTLFEKFEAKLEEYN---G------NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N--QDTLLLVSGTGE 117 (180)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHTT---T------CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C--SSCEEEECTTCC
T ss_pred EeCchHHHHHHHHHHHHHHHHHhc---C------ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c--CCeEEEECCCCc
Confidence 569999999999999999999998 3 34556667788889999999999999999 4 799999999999
Q ss_pred eece--eEEEecCCchHHHHHHHHhhcC---CCCCcc
Q psy2869 312 YFAW--KATAMGRNYVNGKTFLEKREKL---RVPNFC 343 (352)
Q Consensus 312 ~~~~--~~~a~G~~s~~a~~~Le~~~~~---~~~~~~ 343 (352)
+.++ ++.|+|+|++.|+++||+.|++ +|+.++
T Consensus 118 ~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee 154 (180)
T 2z3b_A 118 VIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASE 154 (180)
T ss_dssp EECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH
T ss_pred EEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH
Confidence 9984 9999999999999999999998 888776
No 96
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.73 E-value=2.1e-18 Score=148.67 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=90.1
Q ss_pred cccCCccchhHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHhhhcCCccccceeeEEEEEeCCCCeEEEECCCCc
Q psy2869 232 GFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 311 (352)
Q Consensus 232 ~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~q~~t~~~~~RP~g~~~ll~G~d~~gp~ly~~dp~G~ 311 (352)
++||+.||++.|.+.++.++++|+. .+.+.++.+.|.++++.+.||++ .+++|+| +|+||++||+|+
T Consensus 45 ~~aG~~aD~~~l~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~r~~~--~~l~g~d--~p~Ly~~d~~G~ 111 (174)
T 1g3k_A 45 GFAGGTADAFTLFELFERKLEMHQG---------HLLKSAVELAKDWRTDRALRKLE--AMLIVAD--EKESLIITGIGD 111 (174)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHHSTTGGGCC--CEEEEEC--SSCEEEEETTTE
T ss_pred EeCccHHHHHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHhccCcCcce--EEEEEEC--CCEEEEEcCCCc
Confidence 5699999999999999999999995 24666777788889988888864 6777887 799999999999
Q ss_pred eecee---EEEecCCchHHHHHHHHhhc-CCCCCcccccccccc
Q psy2869 312 YFAWK---ATAMGRNYVNGKTFLEKREK-LRVPNFCGYHIAESL 351 (352)
Q Consensus 312 ~~~~~---~~a~G~~s~~a~~~Le~~~~-~~~~~~~~~~~~~~~ 351 (352)
+.+++ +.|+|+|++.|+++||+.|+ ++|+ +.++++++
T Consensus 112 ~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt---~~~l~~~a 152 (174)
T 1g3k_A 112 VVQPEEDQILAIGSGGNYALSAARALVENTELS---AHEIVEKS 152 (174)
T ss_dssp EECCCTTCEEEESTTHHHHHHHHHHHHHHCCCC---HHHHHHHH
T ss_pred EEecCCCcEEEEcccHHHHHHHHHHhcccCCCC---HHHHHHHH
Confidence 99998 99999999999999999999 8876 33666654
No 97
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=45.76 E-value=29 Score=26.81 Aligned_cols=37 Identities=5% Similarity=0.146 Sum_probs=29.1
Q ss_pred CCceEEEEEeCC-C--eEEcChhHHHHHHhhCccchHHHH
Q psy2869 190 AENIEIGIADEN-G--FRRLDVATVRDHLSNIPQSVHTAI 226 (352)
Q Consensus 190 ~~~iei~ii~~~-g--~~~l~~~ei~~~l~~i~~~~~~~~ 226 (352)
.+.+.|.|++++ | +|.++++++-++..++.+-.|+-+
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e~~Gll~ 105 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMTEFLGLFV 105 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHHHHHHHHHHS
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHHHHHhhceee
Confidence 457788888766 5 799999999999999876665533
No 98
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=26.74 E-value=1.2e+02 Score=25.36 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC
Q psy2869 164 SEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG 202 (352)
Q Consensus 164 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g 202 (352)
.+.+++++|.+++..++..+.++. ..+-|.|+|..|
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g---~pV~IaVvD~~G 97 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDG---RHVSVAVVDRNG 97 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcC---CCEEEEEEeCCC
Confidence 457999999999999999988764 589999999998
No 99
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=25.67 E-value=1e+02 Score=22.44 Aligned_cols=49 Identities=6% Similarity=0.077 Sum_probs=38.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC--eEEcChhHHHHHHh
Q psy2869 163 YSEDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG--FRRLDVATVRDHLS 216 (352)
Q Consensus 163 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g--~~~l~~~ei~~~l~ 216 (352)
..++++.++..+.+...++. .....+.+.+++++| +...+.+|++.-+.
T Consensus 22 v~~~i~~~~L~~kv~~~~~~-----~~~~~f~lky~DEeGD~itisSd~EL~eAl~ 72 (89)
T 1vd2_A 22 FEPSISFEGLCNEVRDMCSF-----DNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 72 (89)
T ss_dssp ECTTCCHHHHHHHHHHHTTC-----CSSCCEEEEECCSSSCCEECCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCC-----CCCCeEEEEEECCCCCcccccCHHHHHHHHH
Confidence 35688999998888876652 235689999999988 89999999987554
No 100
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=22.18 E-value=1e+02 Score=24.48 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCceEEEEEeCCC
Q psy2869 165 EDLELDDAVHTAILTLKEGFEGQMTAENIEIGIADENG 202 (352)
Q Consensus 165 ~~~s~~eai~l~~~~l~~~~~~d~~~~~iei~ii~~~g 202 (352)
+.+|+++|.+++..+...+.++ +..+-|.|++..|
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~---g~~v~IaVvD~~G 44 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI---NVAVVFSVVDRGG 44 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT---TCCCEEEEEETTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHc---CCCEEEEEEECCC
Confidence 3589999999999999988775 4589999999988
No 101
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=21.95 E-value=1.3e+02 Score=23.72 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=33.1
Q ss_pred ccCCccchhHHHHHHHH---HHhhhhhhc-------CCCCCHHHHHHHHHHHHHHh
Q psy2869 233 FEGQMTAENIEIGIADE---NGFRRLDVA-------TENIPTQQLVQRVAAIMQEY 278 (352)
Q Consensus 233 ~aG~~aD~~~l~~~~~~---~~~~~~~~~-------~~~~~~~~l~~~ls~~~q~~ 278 (352)
-.||+-|...|.+.++. ....|+... +..+|.|.+|+.|-+.+...
T Consensus 61 ~~GmV~Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~~~ 116 (140)
T 1b66_A 61 VTGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRL 116 (140)
T ss_dssp TTCCSSCHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 47888888888888775 222333322 35789999999999998654
No 102
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=20.55 E-value=1.3e+02 Score=22.24 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=27.2
Q ss_pred CCCCceEEEEEeCCCeEEcChhHHHHHHhhC
Q psy2869 188 MTAENIEIGIADENGFRRLDVATVRDHLSNI 218 (352)
Q Consensus 188 ~~~~~iei~ii~~~g~~~l~~~ei~~~l~~i 218 (352)
.+.+..+|+.++++|-+.-+..||..+|++-
T Consensus 39 ~s~gk~DvYY~sP~GkkfRSk~ev~ryL~~~ 69 (97)
T 3c2i_A 39 RSAGKYDVYLINPQGKAFRSKVELIMYFEKV 69 (97)
T ss_dssp TTTTCEEEEEECTTSCEECSHHHHHHHHHHH
T ss_pred CCCCcceEEEECCCCCEEECHHHHHHHHHHC
Confidence 4567899999999999999999999999754
Done!