RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2869
(352 letters)
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 306 bits (786), Expect = e-105
Identities = 172/219 (78%), Positives = 197/219 (89%), Gaps = 1/219 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
PSGKLVQIEYALAAV GAPSVGIKA+NG+VLATEKKQK+IL++ +HKVEPIT +IG+
Sbjct: 14 PSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGL 73
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
VYSGMGPDYR+LV +ARK+AQQY LVYQE IPT QLVQRVA++MQEYTQSGGVRPFGVSL
Sbjct: 74 VYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSL 133
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
LICGW+ RPYL+Q DPSGAYFAWKATAMG+NYVNGKTFLEKRY+EDLEL+DA+HTAILT
Sbjct: 134 LICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILT 193
Query: 180 LKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNI 218
LKE FEGQMT +NIE+GI +E GFRRL V+D+L+ I
Sbjct: 194 LKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 232
Score = 129 bits (326), Expect = 7e-36
Identities = 65/75 (86%), Positives = 70/75 (93%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
E IPT QLVQRVA++MQEYTQSGGVRPFGVSLLICGW+ RPYL+Q DPSGAYFAWKATA
Sbjct: 102 EPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATA 161
Query: 320 MGRNYVNGKTFLEKR 334
MG+NYVNGKTFLEKR
Sbjct: 162 MGKNYVNGKTFLEKR 176
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 298 bits (765), Expect = e-101
Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 7/225 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY + A++ G+ ++GI+ S G+ LA EK+ + L E I K+ I +IG
Sbjct: 17 PEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG-----VRP 114
SG+ D + L+ KAR Q + Y E + + + Q V+ + ++ + RP
Sbjct: 77 AMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRP 136
Query: 115 FGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVH 174
FGV+LL G D K P L+ DPSG + A A+G ++ L++ Y + + L +A+
Sbjct: 137 FGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIK 196
Query: 175 TAILTLKEGFEGQMTAENIEIGIADEN-GFRRLDVATVRDHLSNI 218
++++ LK+ E ++ A NIE+ F + + + +I
Sbjct: 197 SSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 241
Score = 124 bits (313), Expect = 6e-34
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGG-----VRPFGVSLLICGWDNKRPYLYQCDPSGAYFA 314
E + + + Q V+ + ++ + RPFGV+LL G D K P L+ DPSG +
Sbjct: 105 ETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQ 164
Query: 315 WKATAMGRNYVNGKTFLEKR 334
A A+G ++ L++
Sbjct: 165 CDARAIGSASEGAQSSLQEL 184
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 291 bits (748), Expect = 4e-99
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 2/217 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E + I K++ I DY+
Sbjct: 17 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ GGVRP+GVSL
Sbjct: 77 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSL 136
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
+ G D P L+ CDP+G +KATA+G +FLE+ Y E+L +AV I
Sbjct: 137 IFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKA 196
Query: 180 LKEGFEGQMTAENIEIGIAD-ENGFRRLDVATVRDHL 215
LK E + EI N +R D V+ L
Sbjct: 197 LKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
Score = 130 bits (330), Expect = 2e-36
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+ + LV+RVA MQ+YTQ GGVRP+GVSL+ G D P L+ CDP+G +KATA
Sbjct: 105 SLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATA 164
Query: 320 MGRNYVNGKTFLEKR 334
+G +FLE+
Sbjct: 165 IGSGKDAVVSFLERE 179
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 289 bits (742), Expect = 5e-98
Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 10/228 (4%)
Query: 1 PSGKLVQIEYALAAVE-AGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A S+ ++ + V+ ++KK L + + + I+ IG
Sbjct: 12 PEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
MV +G PD R +A+ A +++ Y ++P L +R+A + Q YTQ +RP GV
Sbjct: 72 MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVI 131
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE-------DLELD 170
L D + P +Y+ DP+G Y +KATA G T LE + + + +
Sbjct: 132 LTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWE 191
Query: 171 DAVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNI 218
V AI + + + + ++E+G+A ++ F L + + L I
Sbjct: 192 KVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAI 239
Score = 125 bits (317), Expect = 2e-34
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
++P L +R+A + Q YTQ +RP GV L D + P +Y+ DP+G Y +KAT
Sbjct: 101 YDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160
Query: 319 AMGRNYVNGKTFLEKREK 336
A G T LE K
Sbjct: 161 ATGPKQQEITTNLENHFK 178
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 287 bits (738), Expect = 2e-97
Identities = 77/225 (34%), Positives = 115/225 (51%), Gaps = 7/225 (3%)
Query: 1 PSGKLVQIEYALAAVE-AGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A+ G SV ++ + V+ T+KK L + + + IT+ IG
Sbjct: 18 PEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIG 77
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
V +GM D R V++AR A +K Y IP L +R+A I Q YTQ+ +RP G
Sbjct: 78 CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCC 137
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE--DLELDDAVHT 175
+++ G D ++ P +Y+CDP+G Y +KATA G +FLEK+ + D + V T
Sbjct: 138 MILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVET 197
Query: 176 AILTLKEGFEGQMTAENIEIGI--ADENGFRRLDVATVRDHLSNI 218
AI L IE+G+ + FR L A + HL +
Sbjct: 198 AITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 242
Score = 125 bits (317), Expect = 2e-34
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
IP L +R+A I Q YTQ+ +RP G +++ G D ++ P +Y+CDP+G Y +KAT
Sbjct: 107 YEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKAT 166
Query: 319 AMGRNYVNGKTFLEKREK 336
A G +FLEK+ K
Sbjct: 167 AAGVKQTESTSFLEKKVK 184
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 286 bits (735), Expect = 1e-96
Identities = 82/223 (36%), Positives = 127/223 (56%), Gaps = 4/223 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV G ++GI +G+VLA +++ + L + I K+ I D++
Sbjct: 21 PEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAA 80
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
SG+ D R+L+ +AR AQ Y+L Y E I + L +++ I Q YTQ GGVRPFGVSL
Sbjct: 81 ATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSL 140
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
LI G D L++ DPSGA +KATA+G LEK Y +D+ LD+ + AI
Sbjct: 141 LIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITA 200
Query: 180 LKEGFEGQMTAENIEIGI--ADENGFRRLDVATVRDHLSNIPQ 220
L + E + EN+++ I + F+++ V ++ + + +
Sbjct: 201 LTKANE-DIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKK 242
Score = 130 bits (328), Expect = 6e-36
Identities = 36/75 (48%), Positives = 44/75 (58%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
E I + L +++ I Q YTQ GGVRPFGVSLLI G D L++ DPSGA +KATA
Sbjct: 109 EEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATA 168
Query: 320 MGRNYVNGKTFLEKR 334
+G LEK
Sbjct: 169 IGSGRPVVMELLEKE 183
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 284 bits (730), Expect = 4e-96
Identities = 124/237 (52%), Positives = 156/237 (65%), Gaps = 19/237 (8%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
PSGKL QI+YAL AV+ G S+GIKA+NG+V+ATEKK + L + + KV +T IG
Sbjct: 14 PSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGA 73
Query: 60 VYSGMGPDYRLLVKKARKIAQQ-YKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
VYSGMGPDYR+LV K+RK+A YK +Y E PT+ LV VA IMQE TQSGGVRPFGVS
Sbjct: 74 VYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVS 133
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
LLI G D LYQ DPSG+YF WKATA+G+ V KTFLEKR++++LEL+DA+H A+
Sbjct: 134 LLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIAL 193
Query: 178 LTLKEGFEGQMTAENIEIGIADENG----------------FRRLDVATVRDHLSNI 218
LTLKE EG+ + IE+ I + FR+L + D L +
Sbjct: 194 LTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL 250
Score = 125 bits (315), Expect = 5e-34
Identities = 51/76 (67%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
E PT+ LV VA IMQE TQSGGVRPFGVSLLI G D LYQ DPSG+YF WKAT
Sbjct: 103 EYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKAT 162
Query: 319 AMGRNYVNGKTFLEKR 334
A+G+ V KTFLEKR
Sbjct: 163 AIGKGSVAAKTFLEKR 178
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 284 bits (729), Expect = 5e-96
Identities = 84/223 (37%), Positives = 129/223 (57%), Gaps = 4/223 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ GA ++GIK G++L +K+ + L E D I K+ I ++I
Sbjct: 17 PDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICA 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
SG+ D R+L+ +AR AQ +L Y I ++L +++ Q+YTQ GGVRPFGVSL
Sbjct: 77 ATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSL 136
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
LI G + P LY+ DPSGA +KATA+G + F EK Y +DL DDA+ ++
Sbjct: 137 LIAGVNEV-PKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVA 195
Query: 180 LKEGFEGQMTAENIEIGI--ADENGFRRLDVATVRDHLSNIPQ 220
+ E ++ ENIE+G D+ F+ + ++ ++ +
Sbjct: 196 MGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANE 238
Score = 123 bits (310), Expect = 2e-33
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
I ++L +++ Q+YTQ GGVRPFGVSLLI G + P LY+ DPSGA +KATA
Sbjct: 105 IPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEV-PKLYETDPSGALLEYKATA 163
Query: 320 MGRNYVNGKTFLEKR 334
+G + F EK
Sbjct: 164 IGMGRMAVTEFFEKE 178
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 283 bits (726), Expect = 1e-95
Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 9/227 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 9 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 68
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSG------GVR 113
SG+ D R +++ AR A + L Y E+I + L Q V + + + R
Sbjct: 69 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSR 128
Query: 114 PFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDA 172
PFGV+LLI G D L+ +PSG ++ + A A+G + L + L L +A
Sbjct: 129 PFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 188
Query: 173 VHTAILTLKEGFEGQMTAENIEIG-IADENGFRRLDVATVRDHLSNI 218
+ LK+ E ++ N ++ I ++GF+ D + + +
Sbjct: 189 ELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKEL 235
Score = 116 bits (293), Expect = 5e-31
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSG------GVRPFGVSLLICGWDNKR-PYLYQCDPSGAY 312
E+I + L Q V + + + RPFGV+LLI G D L+ +PSG +
Sbjct: 97 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF 156
Query: 313 FAWKATAMGRNYVNGKTFLEKR 334
+ + A A+G + L
Sbjct: 157 YRYNAKAIGSGSEGAQAELLNE 178
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 280 bits (719), Expect = 9e-95
Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 7/221 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 14 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 72
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLL 120
+G+ PD R+L R+ LV+ + ++ + Q+ TQS G RP+GV LL
Sbjct: 73 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLL 132
Query: 121 ICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE----DLELDDAVHTA 176
I G+D +L + PSG TA+G KT+LE+ D D+ +
Sbjct: 133 IIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAG 192
Query: 177 ILTLKEGFEGQ-MTAENIEIGI-ADENGFRRLDVATVRDHL 215
+ + + + +T +N+ I I + F D V ++
Sbjct: 193 VEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233
Score = 129 bits (327), Expect = 5e-36
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+ ++ + Q+ TQS G RP+GV LLI G+D +L + PSG TA
Sbjct: 100 RKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTA 159
Query: 320 MGRNYVNGKTFLEKREK 336
+G KT+LE+
Sbjct: 160 IGARSQGAKTYLERTLD 176
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 280 bits (718), Expect = 2e-94
Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 7/225 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G L Q+EYA AV+ G+ +VG++ + +VL EKK L + + K+ + D + M
Sbjct: 12 PDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCM 71
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
++G+ D R+++ +AR Q ++L ++ + + + + +A++ Q YTQS G RPFG+S
Sbjct: 72 AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISA 131
Query: 120 LICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSED--LELDDAVHTA 176
LI G+D + P LYQ DPSG Y AWKA A+GR + + FLEK Y+++ D +
Sbjct: 132 LIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLV 191
Query: 177 ILTLKEGFEGQMTAENIEIGIAD-ENGFRRLDVATVRDHLSNIPQ 220
I L E Q +NIE+ + + + L+ + +++ I +
Sbjct: 192 IKALLE--VVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEK 234
Score = 123 bits (312), Expect = 1e-33
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKAT 318
+ + + + + +A++ Q YTQS G RPFG+S LI G+D + P LYQ DPSG Y AWKA
Sbjct: 100 DPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKAN 159
Query: 319 AMGRNYVNGKTFLEKREK 336
A+GR + + FLEK
Sbjct: 160 AIGRGAKSVREFLEKNYT 177
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 279 bits (716), Expect = 4e-94
Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 10/228 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED--CIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 14 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ GG+RPFGVS
Sbjct: 74 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVS 133
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
+ G+D++ LY +PSG Y WKA ++G N +T L+ Y +D+++DDA+ A+
Sbjct: 134 FIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELAL 193
Query: 178 LTLKEGFEGQ-MTAENIEIGI------ADENGFRRLDVATVRDHLSNI 218
TL + + +T + +E E + ++D L
Sbjct: 194 KTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKT 241
Score = 127 bits (320), Expect = 7e-35
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
E+IP + LV+R++ I Q YTQ GG+RPFGVS + G+D++ LY +PSG Y WKA
Sbjct: 103 EDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162
Query: 319 AMGRNYVNGKTFLEKR 334
++G N +T L+
Sbjct: 163 SVGANTSAAQTLLQMD 178
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 279 bits (717), Expect = 6e-94
Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 6/223 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P G++ QIEYA+ AV+ G+ +VG+K+ VL K+ ++ L K+ + ++IG+
Sbjct: 15 PQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH-QKKILHVDNHIGIS 73
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLL 120
+G+ D RLL R+ + V+ +P +LV + + Q TQ G RP+GV LL
Sbjct: 74 IAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLL 133
Query: 121 ICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLE--LDDAVHTAIL 178
I G+D+ P+++Q PS YF +A ++G + +T+LE+ SE +E L++ V +
Sbjct: 134 IAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLR 193
Query: 179 TLKEGFEGQ--MTAENIEIGI-ADENGFRRLDVATVRDHLSNI 218
L+E + +T +N+ IGI + F D V L +
Sbjct: 194 ALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL 236
Score = 125 bits (317), Expect = 3e-34
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+P +LV + + Q TQ G RP+GV LLI G+D+ P+++Q PS YF +A +
Sbjct: 101 RPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMS 160
Query: 320 MGRNYVNGKTFLEKREK 336
+G + +T+LE+
Sbjct: 161 IGARSQSARTYLERHMS 177
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 275 bits (705), Expect = 2e-92
Identities = 82/228 (35%), Positives = 127/228 (55%), Gaps = 10/228 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G + Q+EYAL AV+ G +VG+K N +VL E++ L + KV I ++
Sbjct: 11 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVV 70
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +SG+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSGGVRPFGVS
Sbjct: 71 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVS 130
Query: 119 LLICGWD--NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE---DLELDDAV 173
LI G+D + P LYQ +PSG Y +W A +GRN + FLEK Y +++ V
Sbjct: 131 TLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECV 190
Query: 174 HTAILTLKEGFEGQMTAENIEIGIAD-ENGFRRLDVATVRDHLSNIPQ 220
+ +L E + A+NIEI + ++ L + +++ I Q
Sbjct: 191 KLTVRSLLEVVQ--TGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQ 236
Score = 125 bits (315), Expect = 3e-34
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD--NKRPYLYQCDPSGAYFAWKA 317
+ + + L + VA + Q YTQSGGVRPFGVS LI G+D + P LYQ +PSG Y +W A
Sbjct: 100 DPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSA 159
Query: 318 TAMGRNYVNGKTFLEKREKLRVPN 341
+GRN + FLEK + P
Sbjct: 160 QTIGRNSKTVREFLEKNYDRKEPP 183
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 273 bits (699), Expect = 3e-91
Identities = 81/229 (35%), Positives = 120/229 (52%), Gaps = 9/229 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCI--HKVEPITDYIG 58
P G+L Q+EYA+ A+ +GI A++G++LA E++ L ++ K+ + + +
Sbjct: 14 PEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+G+ D +L + R IAQ+Y L YQE IP +QLV + I Q YTQ GG RPFGVS
Sbjct: 74 CSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVS 133
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE-DLELDDAVHTA 176
LL GWD LYQ DPSG Y WKAT +G N + L++ Y E ++ L A+ A
Sbjct: 134 LLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALA 193
Query: 177 ILTLKEGFE-GQMTAENIEIGIADENG----FRRLDVATVRDHLSNIPQ 220
I L + + +++AE +EI R L V + +
Sbjct: 194 IKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEE 242
Score = 123 bits (311), Expect = 2e-33
Identities = 39/76 (51%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
E IP +QLV + I Q YTQ GG RPFGVSLL GWD LYQ DPSG Y WKAT
Sbjct: 103 EPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKAT 162
Query: 319 AMGRNYVNGKTFLEKR 334
+G N + L++
Sbjct: 163 CIGNNSAAAVSMLKQD 178
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 272 bits (697), Expect = 4e-91
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 5/223 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G++ Q+EYA+ AVE + ++GI+ +G+V EK + L+E ++ + ++GM
Sbjct: 16 PDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGM 75
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
+G+ D R L AR+ A ++ + NIP + L RVA + YT VRPFG S
Sbjct: 76 AVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSF 135
Query: 120 LICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAIL 178
++ + N LY DPSG + + A+G+ KT +EK +++ D V
Sbjct: 136 MLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAK 195
Query: 179 TLKE-GFEGQMTAENIEIGI--ADENGFRRLDVATVRDHLSNI 218
+ E + A +E+ NG + +R+
Sbjct: 196 IIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKY 238
Score = 122 bits (308), Expect = 4e-33
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKAT 318
NIP + L RVA + YT VRPFG S ++ + N LY DPSG + +
Sbjct: 104 YNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC 163
Query: 319 AMGRNYVNGKTFLEKREK 336
A+G+ KT +EK +
Sbjct: 164 AIGKARQAAKTEIEKLQM 181
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 265 bits (680), Expect = 1e-88
Identities = 73/223 (32%), Positives = 109/223 (48%), Gaps = 8/223 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK + L K++ + +IG
Sbjct: 13 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGC 72
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T VRPFGVS
Sbjct: 73 VYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVST 132
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK---RYSEDLELDDAVHTA 176
+ G D +LY +PSG+Y+ +K A G+ + K LEK + E L +AV A
Sbjct: 133 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 192
Query: 177 ILTLKEGFEGQM-TAENIEIGIA---DENGFRRLDVATVRDHL 215
+ E +EI + NG + +
Sbjct: 193 AKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 235
Score = 127 bits (321), Expect = 5e-35
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
IP R+ +Q +T VRPFGVS + G D +LY +PSG+Y+ +K A
Sbjct: 101 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA 160
Query: 320 MGRNYVNGKTFLEKREK 336
G+ + K LEK
Sbjct: 161 TGKGRQSAKAELEKLVD 177
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 263 bits (674), Expect = 4e-87
Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 8/223 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK + L K++ + +IG
Sbjct: 17 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGC 76
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T VRPFGVS
Sbjct: 77 VYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVST 136
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK---RYSEDLELDDAVHTA 176
+ G D +LY +PSG+Y+ +K A G+ + K LEK + E L +AV A
Sbjct: 137 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 196
Query: 177 ILTLKEGFEGQM-TAENIEIGI---ADENGFRRLDVATVRDHL 215
+ E +EI ++ NG + +
Sbjct: 197 AKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 239
Score = 127 bits (322), Expect = 1e-34
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
IP R+ +Q +T VRPFGVS + G D +LY +PSG+Y+ +K A
Sbjct: 105 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA 164
Query: 320 MGRNYVNGKTFLEKREK 336
G+ + K LEK
Sbjct: 165 TGKGRQSAKAELEKLVD 181
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 188 bits (480), Expect = 1e-58
Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 23/238 (9%)
Query: 1 PSGKLVQ-IEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGM 59
P + + E A + V + + G++ E +++ K+ + D +G
Sbjct: 9 PEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENPSRSL------QKISELYDRVGF 62
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
+G ++ L + + A Y T + + V A + +P+ V L
Sbjct: 63 AAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVEL 122
Query: 120 LICGW----DNKRPYLYQCDPSGAYF-AWKATAMGRNYVNGKTFLEKRYSEDLELDDAVH 174
+ + KRP LY+ G+ MG L++ Y+E+ L DA+
Sbjct: 123 CVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALR 182
Query: 175 TAILTLKEGFEGQ-------MTAENIEIGIADENG----FRRLDVATVRDHLSNIPQS 221
A+ L+ G + ++E+ + D N FRR+ + ++ L +
Sbjct: 183 IAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQESP 240
Score = 72.3 bits (177), Expect = 9e-15
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 259 TENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGW----DNKRPYLYQCDPSGAYF- 313
++ +QL A + + +P+ V L + + KRP LY+ G+
Sbjct: 91 RRDVTGRQLANVYAQTLGT-IFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIAD 149
Query: 314 AWKATAMGRNYVNGKTFLEKR 334
MG L++
Sbjct: 150 EPHFVVMGGTTEPIANALKES 170
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 175 bits (444), Expect = 4e-53
Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 24/231 (10%)
Query: 7 QIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGP 66
+ E A + G V + +G++ E + HKV + D +G G
Sbjct: 16 RSELARKGIARGRSVVVLTFRDGVLFVAENPSTAL------HKVSELYDRLGFAAVGKYN 69
Query: 67 DYRLLVKKARKIAQQYKLVY-QENIPTQQLVQRVAAIM-QEYTQSGGVRPFGVSLLI--- 121
++ L + A Y + ++ + L A + +T+ +P+ V + +
Sbjct: 70 EFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEV 127
Query: 122 -CGWDNKRPYLYQCDPSGAYFAWKAT-AMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
K P LY+ G+ + MG T + + Y DL+L+ AV A+
Sbjct: 128 GRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNA 187
Query: 180 LKE-----GFEGQMTAENIEIGIADENG----FRRLDVATVRDHLSNIPQS 221
L++ G + + ++E+ + D++ FRR+ + + P +
Sbjct: 188 LRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEPAA 238
Score = 65.8 bits (160), Expect = 2e-12
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 239 AENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIM-QEYTQSGGVRPFGVSLLI---- 293
EN+ R ++ + L A + +T+ +P+ V + +
Sbjct: 71 FENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVG 128
Query: 294 CGWDNKRPYLYQCDPSGAYFAWKAT-AMGRNYVNGKTFLEKR 334
K P LY+ G+ + MG T + +
Sbjct: 129 RVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRES 170
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 144 bits (365), Expect = 2e-41
Identities = 33/188 (17%), Positives = 70/188 (37%), Gaps = 8/188 (4%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
G+ +G++L + + +++ + K+ I I +G+ D + + A
Sbjct: 4 AGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKM 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 139
+ + L + + + + Y G SL++ G D P LY+ P G+
Sbjct: 64 ELHALSTGREPRVATVTRILRQTLFRYQG-----HVGASLVVGGVDLNGPQLYEVHPHGS 118
Query: 140 YFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEG-FEGQMTAENIEIGIA 198
Y TA+G LE R+ ++ L+ A + + G + N++ +
Sbjct: 119 YSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVI 178
Query: 199 DENGFRRL 206
G +
Sbjct: 179 TAGGAKLQ 186
Score = 67.7 bits (166), Expect = 2e-13
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+ + + + Y G SL++ G D P LY+ P G+Y TA
Sbjct: 72 REPRVATVTRILRQTLFRYQG-----HVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTA 126
Query: 320 MGRNYVNGKTFLEKR 334
+G LE R
Sbjct: 127 LGSGQGAAVALLEDR 141
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 132 bits (335), Expect = 6e-37
Identities = 35/210 (16%), Positives = 78/210 (37%), Gaps = 9/210 (4%)
Query: 1 PSGKLVQIEYAL-AAVEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYI 57
+ L + + A G VG+K +NG+V+A + + Q I+ + K+ I+ I
Sbjct: 11 RNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKI 70
Query: 58 GMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGV 117
+G D + + + + L +Q + + +Y G
Sbjct: 71 WCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQG-----HIGA 125
Query: 118 SLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
L++ G D +L+ G+ ++G + LE + +DL ++A+ A
Sbjct: 126 YLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS 185
Query: 178 LTLKEGFEG-QMTAENIEIGIADENGFRRL 206
++ G + N+++ + +
Sbjct: 186 DAIQAGIWNDLGSGSNVDVCVMEIGKDAEY 215
Score = 59.3 bits (144), Expect = 2e-10
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+Q + + +Y G L++ G D +L+ G+ +
Sbjct: 101 REPRVVSALQMLKQHLFKYQG-----HIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLS 155
Query: 320 MGRNYVNGKTFLEKR 334
+G + LE
Sbjct: 156 LGSGSLAAMAVLESH 170
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 126 bits (319), Expect = 6e-35
Identities = 32/188 (17%), Positives = 72/188 (38%), Gaps = 8/188 (4%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
VG+K +NG+V+A + + Q I+ + K+ I+ I +G D + +
Sbjct: 4 VGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNI 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 139
+ + L +Q + + +Y G L++ G D +L+ G+
Sbjct: 64 ELHSLYTSREPRVVSALQMLKQHLFKYQG-----HIGAYLIVAGVDPTGSHLFSIHAHGS 118
Query: 140 YFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-QMTAENIEIGIA 198
++G + LE + +DL ++A+ A ++ G + N+++ +
Sbjct: 119 TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVM 178
Query: 199 DENGFRRL 206
+
Sbjct: 179 EIGKDAEY 186
Score = 58.4 bits (142), Expect = 3e-10
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+Q + + +Y G L++ G D +L+ G+ +
Sbjct: 72 REPRVVSALQMLKQHLFKYQG-----HIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLS 126
Query: 320 MGRNYVNGKTFLEKR 334
+G + LE
Sbjct: 127 LGSGSLAAMAVLESH 141
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 124 bits (313), Expect = 3e-34
Identities = 46/216 (21%), Positives = 98/216 (45%), Gaps = 13/216 (6%)
Query: 14 AVEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLL 71
+E G +VGI + +++ATE++ + + K+ I Y GM +G+ D ++L
Sbjct: 4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVL 63
Query: 72 VKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYL 131
V+ + + Y+L + N+P + + ++ ++ + P+ V LL+ G D P++
Sbjct: 64 VRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKY----MPYMVQLLVGGIDTA-PHV 118
Query: 132 YQCDPSGAYFAWKATAMG--RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEG-FEGQM 188
+ D +G + G +V G LE +YSE + +D+ V I +
Sbjct: 119 FSIDAAGGSVEDIYASTGSGSPFVYG--VLESQYSEKMTVDEGVDLVIRAISAAKQRDSA 176
Query: 189 TAENIEIG-IADENGFRRLDVATVRDHLSNIPQSVH 223
+ I++ I ++G+ +L + + + +H
Sbjct: 177 SGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLILH 212
Score = 54.2 bits (131), Expect = 8e-09
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
N+P + + ++ ++ + P+ V LL+ G D P+++ D +G +
Sbjct: 80 VNMPIEAVATLLSNMLNQVKY----MPYMVQLLVGGIDTA-PHVFSIDAAGGSVEDIYAS 134
Query: 320 MG 321
G
Sbjct: 135 TG 136
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 121 bits (306), Expect = 5e-33
Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 12/190 (6%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
G+ +GIVL + + + ++ + K+ I+ I +G D + +
Sbjct: 4 AGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNL 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 139
+ + L + + ++ Y G +L++ G D P+LY P G+
Sbjct: 64 ELHSLSTGRLPRVVTANRMLKQMLFRYRG-----YIGAALVLGGVDVTGPHLYSIYPHGS 118
Query: 140 YFAWKATAMG--RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-QMTAENIEIG 196
MG E ++ D+E ++A + + G + NI++
Sbjct: 119 TDKLPYVTMGSGSLAAMA--VFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLC 176
Query: 197 IADENGFRRL 206
+ +N L
Sbjct: 177 VISKNKLDFL 186
Score = 55.4 bits (134), Expect = 4e-09
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+ + ++ Y G +L++ G D P+LY P G+
Sbjct: 72 RLPRVVTANRMLKQMLFRYRG-----YIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVT 126
Query: 320 MG 321
MG
Sbjct: 127 MG 128
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 103 bits (259), Expect = 1e-25
Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 25/231 (10%)
Query: 9 EYALAAVEAGAPSVGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMG 65
+ G V + G++LA +++ I D V +Y +G
Sbjct: 56 MESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDV-EAVYVTDEYSAAGIAGTA 114
Query: 66 PDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD 125
LV+ + Y+ + + R+A++++ ++ V L+ G+D
Sbjct: 115 GIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGN-LGAAMQGLAVVPLLVGYD 173
Query: 126 ------NKRPYLYQCDPSGAYFAWKA--TAMG--RNYVNGKTFLEKRYSEDLELDDAVHT 175
++ + D G + +A A+G + L+K YS D + + A+
Sbjct: 174 LDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKS--ALKKIYSPDSDEETALRA 231
Query: 176 AILTLKEGFE------GQMTAENIEIGIA--DENGFRRLDVATVRDHLSNI 218
AI +L + + G I + G + T + I
Sbjct: 232 AIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRI 282
Score = 40.0 bits (93), Expect = 7e-04
Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD------NKRPYLYQCDPSGAYF 313
+ R+A++++ ++ V L+ G+D ++ + D G +
Sbjct: 137 VPLTFDGKANRLASMVRGN-LGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRY 195
Query: 314 AWKA--TAMG--RNYVNGKTFLEKR 334
+A A+G + L+K
Sbjct: 196 EERAGYHAVGSGSLFAKS--ALKKI 218
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 100 bits (252), Expect = 2e-25
Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 13/207 (6%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ K +G+++A + + I + KV I Y+ +G D + +
Sbjct: 4 LAFKFRHGVIVAADSRATAGAYIASQTV-KKVIEINPYLLGTMAGGAADCSFWERLLARQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSG 138
+ Y+L +E I + +A ++ +Y + +ICGWD + P LY D G
Sbjct: 63 CRIYELRNKERISVAAASKLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEG 118
Query: 139 AYFAWKATAMG--RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEG-FEGQMTAENIEI 195
+ ++G Y G +++ YS DLE++ A A + + + + + +
Sbjct: 119 NRISGATFSVGSGSVYAYG--VMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNL 176
Query: 196 GIADENGFRRLDVATVRDHLSNIPQSV 222
E+G+ R+ V D S
Sbjct: 177 YHVREDGWIRVSSDNVADLHEKYSGST 203
Score = 47.6 bits (114), Expect = 1e-06
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
E I + +A ++ +Y + +ICGWD + P LY D G + +
Sbjct: 72 ERISVAAASKLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFS 127
Query: 320 MG 321
+G
Sbjct: 128 VG 129
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 100 bits (251), Expect = 4e-25
Identities = 39/216 (18%), Positives = 79/216 (36%), Gaps = 21/216 (9%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
V + G++LA +++ I D KV +Y +G LV+
Sbjct: 4 VALTYKGGVLLAGDRRATQGNLIASRDV-EKVYVTDEYSAAGIAGTAGIAIELVRLFAVE 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD------NKRPYLY 132
+ Y+ + + R+A++++ ++ V L+ G+D ++ +
Sbjct: 63 LEHYEKIEGVPLTFDGKANRLASMVRGN-LGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121
Query: 133 QCDPSGAYFAWKA--TAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE----- 185
D G + +A A+G + K+ L+K YS D + + A+ AI +L + +
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSAT 181
Query: 186 -GQMTAENIEIGIA--DENGFRRLDVATVRDHLSNI 218
G I + G + T + I
Sbjct: 182 GGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRI 217
Score = 38.7 bits (90), Expect = 0.001
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD------NKRPYLYQCDPSGAYF 313
+ R+A++++ ++ V L+ G+D ++ + D G +
Sbjct: 72 VPLTFDGKANRLASMVRGN-LGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRY 130
Query: 314 AWKA--TAMGRNYVNGKTFLEKR 334
+A A+G + K+ L+K
Sbjct: 131 EERAGYHAVGSGSLFAKSALKKI 153
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 99.6 bits (249), Expect = 5e-25
Identities = 44/204 (21%), Positives = 85/204 (41%), Gaps = 17/204 (8%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
VG+ +G+V+ATEK+ I + K+ I D + M +G D + L + +
Sbjct: 4 VGLVCKDGVVMATEKRATMGNFIASKAA-KKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSG 138
A Y++ + + + + ++ Y P+ V LLI G D++ +Y DP G
Sbjct: 63 ANLYEIRRERKPTVRAIATLTSNLLNSYRY----FPYLVQLLIGGIDSEGKSIYSIDPIG 118
Query: 139 A-YFAWKATAMG--RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-QMTAENIE 194
A G G LE R++ ++ +D+AV A+ + + + + I+
Sbjct: 119 GAIEEKDIVATGSGSLTAYG--VLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGID 176
Query: 195 IGIADENGFRRL---DVATVRDHL 215
+ E+ F + +V +
Sbjct: 177 VVKITEDEFYQYSPEEVEQILAKF 200
Score = 44.9 bits (107), Expect = 1e-05
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA-YFAWKAT 318
+ + + ++ Y P+ V LLI G D++ +Y DP G
Sbjct: 72 RKPTVRAIATLTSNLLNSYRY----FPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIV 127
Query: 319 AMG 321
A G
Sbjct: 128 ATG 130
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 98.8 bits (247), Expect = 7e-25
Identities = 42/194 (21%), Positives = 84/194 (43%), Gaps = 13/194 (6%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+GI+ + ++LA+ K ++L + K ++ + M ++G D + +
Sbjct: 5 LGIRVQDSVILASSKAVTRGISVLKDSD-DKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR--PYLYQCDP 136
Q Y + + Q + V + + +S P+ V++LI G+D K+ P LYQ D
Sbjct: 64 IQLYSIREDYELSPQAVSSFVRQELAKSIRSRR--PYQVNVLIGGYDKKKNKPELYQIDY 121
Query: 137 SGAYFAWKATAMGR--NYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-QMTAENI 193
G A G Y L+ Y D+ ++ + L ++E + M + +
Sbjct: 122 LGTKVELPYGAHGYSGFYTFS--LLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGV 179
Query: 194 EIGIADENGFRRLD 207
+ I D++G R++D
Sbjct: 180 IVKIVDKDGIRQVD 193
Score = 46.0 bits (110), Expect = 4e-06
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR--PYLYQCDPSGAYFAWKA 317
+ Q + V + + +S P+ V++LI G+D K+ P LYQ D G
Sbjct: 73 YELSPQAVSSFVRQELAKSIRSRR--PYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPY 130
Query: 318 TAMG 321
A G
Sbjct: 131 GAHG 134
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 100 bits (250), Expect = 2e-24
Identities = 30/197 (15%), Positives = 71/197 (36%), Gaps = 10/197 (5%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ + GI++A + + + + KV I ++ +G D +
Sbjct: 79 LAFRFQGGIIVAVDSRATAGNWVASQTV-KKVIEINPFLLGTMAGGAADCQFWETWLGSQ 137
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPS 137
+ ++L +E I + ++ ++ +Y + +ICG+ K P +Y D
Sbjct: 138 CRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSD 193
Query: 138 GAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEG-FEGQMTAENIEIG 196
G +G L+ Y DL ++DA++ ++ + ++ +
Sbjct: 194 GTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLY 253
Query: 197 IADENGFRRLDVATVRD 213
E+G+ V +
Sbjct: 254 HVTEDGWIYHGNHDVGE 270
Score = 44.4 bits (105), Expect = 2e-05
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
E I + ++ ++ +Y + +ICG+ K P +Y D G
Sbjct: 147 ERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIF 202
Query: 319 AMG 321
+G
Sbjct: 203 CVG 205
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 96.2 bits (240), Expect = 1e-23
Identities = 30/199 (15%), Positives = 74/199 (37%), Gaps = 14/199 (7%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ + GI++A + + + + +V I ++ +G D +
Sbjct: 4 LAFRFQGGIIVAVDSRATAGNWVASQTV-KRVIEINPFLLGTMAGGAADCQFWETWLGSQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPS 137
+ ++L +E I + ++ ++ +Y + +ICG+ K P +Y D
Sbjct: 63 CRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSD 118
Query: 138 GAYFAWKATAMG--RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEG-FEGQMTAENIE 194
G +G + + G L+ Y DL ++DA++ ++ + ++
Sbjct: 119 GTRLKGDIFCVGSGQTFAYG--VLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVN 176
Query: 195 IGIADENGFRRLDVATVRD 213
+ E+G+ V +
Sbjct: 177 LYHVTEDGWIYHGNHDVGE 195
Score = 41.8 bits (99), Expect = 1e-04
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
E I + ++ ++ +Y + +ICG+ K P +Y D G
Sbjct: 72 ERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIF 127
Query: 319 AMG 321
+G
Sbjct: 128 CVG 130
Score = 93.8 bits (234), Expect = 8e-23
Identities = 13/221 (5%), Positives = 35/221 (15%), Gaps = 18/221 (8%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ S T + + V T IG+ ++ +
Sbjct: 5 QMVPPSAYDRAITVFSPEGRLYQVEYAR-EAVRRGTTAIGIACKDGVVLAVDRRITSKLV 63
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPS 137
+ + + I +
Sbjct: 64 KIRSIEKIFQIDDHVAAATSGLVADARVLI----DRARLEAQIYRLTYGEEISIEMLAKK 119
Query: 138 GAYFAWKA-TAMG--RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-QMTAENI 193
G V+ + + L + + L + +
Sbjct: 120 ICDIKQAYTQHGGVRPFGVSL--LIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVM 177
Query: 194 EIGIADENGFRRL---DVATVRDHLSNIPQSVHTAILTLKE 231
E+ + L + +
Sbjct: 178 ELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCII 218
Score = 39.9 bits (94), Expect = 5e-04
Identities = 2/64 (3%), Positives = 5/64 (7%), Gaps = 6/64 (9%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKA- 317
+ + I +
Sbjct: 73 QIDDHVAAATSGLVADARVLI----DRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYT 128
Query: 318 TAMG 321
G
Sbjct: 129 QHGG 132
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 95.0 bits (236), Expect = 1e-22
Identities = 32/217 (14%), Positives = 75/217 (34%), Gaps = 23/217 (10%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
V +K G+V+A +++ Q ++ + KV DY +G +
Sbjct: 61 VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL 120
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD------NKRPYLYQ 133
+ Y+ + + + R+A +++ + + L+ G+D +
Sbjct: 121 EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAM-QGLLALPLLAGYDIHASDPQSAGRIVS 179
Query: 134 CDPSGAYFAWKA--TAMG--RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE---- 185
D +G + + A+G + ++K YS+ + D + A+ L + +
Sbjct: 180 FDAAGGWNIEEEGYQAVGSGSLFAKS--SMKKLYSQVTDGDSGLRVAVEALYDAADDDSA 237
Query: 186 --GQMTAENIEIGIA--DENGFRRLDVATVRDHLSNI 218
G I D +G + + + + I
Sbjct: 238 TGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAI 274
Score = 41.4 bits (97), Expect = 2e-04
Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD------NKRPYLYQCDPSGAYF 313
+ + R+A +++ + + L+ G+D + D +G +
Sbjct: 129 VPLTFAGKINRLAIMVRGNLAAAM-QGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWN 187
Query: 314 AWKA--TAMG 321
+ A+G
Sbjct: 188 IEEEGYQAVG 197
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 89.2 bits (222), Expect = 3e-21
Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 12/193 (6%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+GI+ + +++A+++ + +D K+ +++ I ++ G D + +K
Sbjct: 5 IGIQGPDYVLVASDRVAASNIVQMKDDH-DKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPS 137
Q YK+ + + + +S P+ V+LL+ G+D P LY D
Sbjct: 64 VQLYKMRNGYELSPTAAANFTRRNLADCLRSRT--PYHVNLLLAGYDEHEGPALYYMDYL 121
Query: 138 GAYFAWKATAMG--RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-QMTAENIE 194
A A G L++ Y+ + + AV L+E + +
Sbjct: 122 AALAKAPFAAHGYGAFLTLS--ILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFS 179
Query: 195 IGIADENGFRRLD 207
+ I D+NG LD
Sbjct: 180 VRIIDKNGIHDLD 192
Score = 40.3 bits (95), Expect = 4e-04
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
+ + + +S P+ V+LL+ G+D P LY D A
Sbjct: 73 YELSPTAAANFTRRNLADCLRSRT--PYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFA 130
Query: 319 AMG 321
A G
Sbjct: 131 AHG 133
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 83.0 bits (206), Expect = 5e-19
Identities = 26/190 (13%), Positives = 59/190 (31%), Gaps = 14/190 (7%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ ++ G+V+ ++ + ++ K+ P+ I SG D + + A
Sbjct: 4 MAVEFDGGVVVGSDSRVSAGTAVVNRVF-DKLSPLHQRIFCALSGSAADAQAIADMAAYQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSG 138
+ + L +E V I +Y + L++ GWD + G
Sbjct: 63 LELHGLELEEPPLVLAAANVVKNISYKYRE-----DLLAHLIVAGWDQREGGQVYGTMGG 117
Query: 139 AYFAWKATAMG--RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEG-FEGQMTAENIEI 195
T G +Y+ G +++ Y + ++ + + I +
Sbjct: 118 MLIRQPFTIGGSGSSYIYG--YVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYL 175
Query: 196 GIADENGFRR 205
G
Sbjct: 176 VTITAAGVDH 185
Score = 39.1 bits (92), Expect = 9e-04
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 5/62 (8%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
E V I +Y + L++ GWD + G T
Sbjct: 72 EPPLVLAAANVVKNISYKYRE-----DLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTI 126
Query: 320 MG 321
G
Sbjct: 127 GG 128
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 79.5 bits (197), Expect = 1e-17
Identities = 31/201 (15%), Positives = 75/201 (37%), Gaps = 16/201 (7%)
Query: 22 VGIKASNGIVLATEK---KQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ +K N + +A ++ Q ++ D K+ P+ D + + +G+ D + + ++ +
Sbjct: 12 MAMKGKNCVAIAADRRFGIQAQLVTTDF-QKIFPMGDRLYIGLAGLATDVQTVAQRLKFR 70
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR--PYLYQCDP 136
Y+L I L+ VA ++ E P+ +I G D K P++ D
Sbjct: 71 LNLYELKEGRQIKPYTLMSMVANLLYEKRFG----PYYTEPVIAGLDPKTFKPFICSLDL 126
Query: 137 SGAYFA---WKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-QMTAEN 192
G + + + G E + +++ D T + + ++
Sbjct: 127 IGCPMVTDDFVVSGTCAEQMYG--MCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMG 184
Query: 193 IEIGIADENGFRRLDVATVRD 213
+ + I +++ + D
Sbjct: 185 VIVHIIEKDKITTRTLKARMD 205
Score = 36.0 bits (84), Expect = 0.008
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR--PYLYQCDPSGA 311
I L+ VA ++ E P+ +I G D K P++ D G
Sbjct: 80 RQIKPYTLMSMVANLLYEKRFG----PYYTEPVIAGLDPKTFKPFICSLDLIGC 129
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 78.4 bits (194), Expect = 3e-17
Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 15/191 (7%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ ++ G+VL + + I K+ PI D I SG D + +
Sbjct: 4 MAVQFDGGVVLGADSRTTTGSYIANRVT-DKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPS 137
+ + E + Y + ++I GWD + +Y
Sbjct: 63 LGFHSIELNEPPLVHTAASLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMG 117
Query: 138 GAYFAWKATAMG--RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-QMTAENIE 194
G G +Y+ G +++ Y E + ++ + L E + I
Sbjct: 118 GMMVRQSFAIGGSGSSYIYG--YVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 175
Query: 195 IGIADENGFRR 205
+ E+G R
Sbjct: 176 LAAIAESGVER 186
Score = 34.5 bits (80), Expect = 0.025
Identities = 11/78 (14%), Positives = 19/78 (24%), Gaps = 20/78 (25%)
Query: 264 TQQLVQRVAAIMQEYTQSGGVRP-------------------FGVSLLICGWDNKR-PYL 303
TQ + V + ++ P ++I GWD + +
Sbjct: 52 TQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQV 111
Query: 304 YQCDPSGAYFAWKATAMG 321
Y G G
Sbjct: 112 YSVPMGGMMVRQSFAIGG 129
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 78.5 bits (194), Expect = 3e-17
Identities = 43/214 (20%), Positives = 74/214 (34%), Gaps = 26/214 (12%)
Query: 22 VGIKASNGIVLATEK---KQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+GI + VLA + +I KV D I M +G D LVK+ +
Sbjct: 13 LGIAGEDFAVLAGDTRNITDYSINSRYE-PKVFDCGDNIVMSANGFAADGDALVKRFKNS 71
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPS 137
+ Y + + + + A +Q P+ V +I G D + +Y DP
Sbjct: 72 VKWYHFDHNDKKLS---INSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPV 128
Query: 138 GAYFAWKATAMG-----------------RNYVNGKTFLEKRYSEDLELDDAVHTAILTL 180
G+Y + A G Y G K+ + L +++ + +
Sbjct: 129 GSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSF 188
Query: 181 KEGFEGQ-MTAENIEIGIADENGFRRLDVATVRD 213
E + +EI I ++G R+ RD
Sbjct: 189 TSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222
Score = 44.3 bits (105), Expect = 2e-05
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 268 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPSGAYFAWKATAMG 321
+ A +Q P+ V +I G D + +Y DP G+Y + A G
Sbjct: 86 INSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGG 140
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 76.9 bits (190), Expect = 1e-16
Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 21/207 (10%)
Query: 22 VGIKASNGIVLATEK---KQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ I + ++A++ + +I D K +TD + SG D L K
Sbjct: 13 LAIAGEDFAIVASDTRLSEGFSIHTRDS-PKCYKLTDKTVIGCSGFHGDCLTLTKIIEAR 71
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPS 137
+ YK + + T + ++ I+ P+ V +I G D + + +Y DP
Sbjct: 72 LKMYKHSNNKAMTTGAIAAMLSTILYSRRFF----PYYVYNIIGGLDEEGKGAVYSFDPV 127
Query: 138 GAYFAWKATAMG----------RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE-G 186
G+Y A G N V K ++ L LD A+ E
Sbjct: 128 GSYQRDSFKAGGSASAMLQPLLDNQVGFKN-MQNVEHVPLSLDRAMRLVKDVFISAAERD 186
Query: 187 QMTAENIEIGIADENGFRRLDVATVRD 213
T + + I I + G R V+ +D
Sbjct: 187 VYTGDALRICIVTKEGIREETVSLRKD 213
Score = 37.6 bits (88), Expect = 0.003
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 21/79 (26%)
Query: 264 TQQLVQRVAAIMQEYTQSGGVR--------------------PFGVSLLICGWDNK-RPY 302
L + + A ++ Y S P+ V +I G D + +
Sbjct: 61 CLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGA 120
Query: 303 LYQCDPSGAYFAWKATAMG 321
+Y DP G+Y A G
Sbjct: 121 VYSFDPVGSYQRDSFKAGG 139
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 73.0 bits (180), Expect = 2e-15
Identities = 25/195 (12%), Positives = 63/195 (32%), Gaps = 14/195 (7%)
Query: 22 VGIKASNGIVLATEKKQ---KTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+G+K G+V+A + F + ++ + + + SG D++ L + ++
Sbjct: 12 LGVKFEGGVVIAADMLGSYGSLARFRNI-SRIMRVNNSTMLGASGDYADFQYLKQVLGQM 70
Query: 79 AQQYKLVY-QENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPS 137
+L+ + + + + M P +++I G+ + +L D
Sbjct: 71 VIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMN--PLWNTMVIGGYADGESFLGYVDML 128
Query: 138 GAYFAWKATAMG--RNYVNGKTFLEKRYSE--DLELDDAVHTAILTLKEGFEG-QMTAEN 192
G + + A G L + + L +A ++ + +
Sbjct: 129 GVAYEAPSLATGYGAYLAQP--LLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNR 186
Query: 193 IEIGIADENGFRRLD 207
+ E G
Sbjct: 187 FQTATVTEKGVEIEG 201
Score = 41.4 bits (98), Expect = 2e-04
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+ + + + M P +++I G+ + +L D G + + A
Sbjct: 81 HSYSPRAIHSWLTRAMYSRRSKMN--PLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLA 138
Query: 320 MG 321
G
Sbjct: 139 TG 140
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 72.6 bits (179), Expect = 3e-15
Identities = 32/201 (15%), Positives = 73/201 (36%), Gaps = 17/201 (8%)
Query: 22 VGIKASNGIVLATEK---KQKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
V + + + +A + Q + K+ ++ + +G+ D L + R
Sbjct: 12 VAMTGKDCVAIACDLRLGSQSLGVSNKF-EKIFHY-GHVFLGITGLATDVTTLNEMFRYK 69
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK--RPYLYQCDP 136
YKL + I + Q V++ + E P+ V ++ G ++K +P++ D
Sbjct: 70 TNLYKLKEERAIEPETFTQLVSSSLYERRFG----PYFVGPVVAGINSKSGKPFIAGFDL 125
Query: 137 SGAYF---AWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-QMTAEN 192
G + + + + G E Y +LE +D T L + ++
Sbjct: 126 IGCIDEAKDFIVSGTASDQLFG--MCESLYEPNLEPEDLFETISQALLNAADRDALSGWG 183
Query: 193 IEIGIADENGFRRLDVATVRD 213
+ I ++ + + +D
Sbjct: 184 AVVYIIKKDEVVKRYLKMRQD 204
Score = 35.3 bits (82), Expect = 0.017
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK--RPYLYQCDPSGAY 312
I + Q V++ + E P+ V ++ G ++K +P++ D G
Sbjct: 79 RAIEPETFTQLVSSSLYERRFG----PYFVGPVVAGINSKSGKPFIAGFDLIGCI 129
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 71.1 bits (175), Expect = 9e-15
Identities = 27/190 (14%), Positives = 63/190 (33%), Gaps = 12/190 (6%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ + +G++L + + I K+ + D I SG D + + +
Sbjct: 13 MAVTFKDGVILGADSRTTTGAYIANRVT-DKLTRVHDKIWCCRSGSAADTQAIADIVQYH 71
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYLYQCDPS 137
+ Y Y T+ + E +++ G+D+K + +Y
Sbjct: 72 LELYTSQYGTPS-TETAASVFKELCYENK-----DNLTAGIIVAGYDDKNKGEVYTIPLG 125
Query: 138 GAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-QMTAENIEIG 196
G+ G + +K + E++ ++ V +L + + + I +
Sbjct: 126 GSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMV 185
Query: 197 IADENGFRRL 206
+ G RL
Sbjct: 186 VLTAAGVERL 195
Score = 34.1 bits (79), Expect = 0.042
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 19/77 (24%)
Query: 264 TQQLVQRVAAIMQEYTQSGGVR------------------PFGVSLLICGWDNK-RPYLY 304
TQ + V ++ YT G +++ G+D+K + +Y
Sbjct: 61 TQAIADIVQYHLELYTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVY 120
Query: 305 QCDPSGAYFAWKATAMG 321
G+ G
Sbjct: 121 TIPLGGSVHKLPYAIAG 137
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 71.7 bits (176), Expect = 2e-14
Identities = 29/202 (14%), Positives = 70/202 (34%), Gaps = 22/202 (10%)
Query: 18 GAPSVGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKK 74
G + +K NG+++A + + F ++ P+ D + SG D + + +
Sbjct: 41 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGV-ERLIPVGDNTVVGISGDISDMQHIERL 99
Query: 75 ARKIAQQYKLVYQ-----ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKR 128
+ + + E + + + +A +M + P ++++ G N
Sbjct: 100 LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMN--PLWNAIIVAGVQSNGD 157
Query: 129 PYLYQCDPSGAYFAWKATAMG--RNYVNGKTFLEKRY-----SEDLELDDAVHTAILTLK 181
+L + G ++ A G + N L K + A + ++
Sbjct: 158 QFLRYVNLLGVTYSSPTLATGFGAHMANP--LLRKVVDRESDIPKTTVQVAEEAIVNAMR 215
Query: 182 EGFE-GQMTAENIEIGIADENG 202
+ ++ N + I D+N
Sbjct: 216 VLYYRDARSSRNFSLAIIDKNT 237
Score = 39.7 bits (93), Expect = 8e-04
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 236 QMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICG 295
Q ++ + + L A E + + + +A +M + P ++++ G
Sbjct: 94 QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMN--PLWNAIIVAG 151
Query: 296 WD-NKRPYLYQCDPSGAYFAWKATAMG 321
N +L + G ++ A G
Sbjct: 152 VQSNGDQFLRYVNLLGVTYSSPTLATG 178
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 70.8 bits (174), Expect = 2e-14
Identities = 27/196 (13%), Positives = 68/196 (34%), Gaps = 18/196 (9%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ +K NG+++A + + F ++ P+ D + SG D + + + + +
Sbjct: 12 ISMKYDNGVIIAADNLGSYGSLLRFNGV-ERLIPVGDNTVVGISGDISDMQHIERLLKDL 70
Query: 79 AQQYKLVYQENIPTQQL-VQRVAAIMQE--YTQSGGVRPFGVSLLICGWD-NKRPYLYQC 134
+ + L + + Y + + P ++++ G N +L
Sbjct: 71 VTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYV 130
Query: 135 DPSGAYFAWKATAMG--RNYVNGKTFLEKRYSED-----LELDDAVHTAILTLKEGFE-G 186
+ G ++ A G + N L K + + A + ++ +
Sbjct: 131 NLLGVTYSSPTLATGFGAHMANP--LLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRD 188
Query: 187 QMTAENIEIGIADENG 202
++ N + I D+N
Sbjct: 189 ARSSRNFSLAIIDKNT 204
Score = 40.8 bits (96), Expect = 3e-04
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 236 QMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICG 295
Q ++ + + L A E + + + +A +M + P ++++ G
Sbjct: 61 QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMN--PLWNAIIVAG 118
Query: 296 WD-NKRPYLYQCDPSGAYFAWKATAMG 321
N +L + G ++ A G
Sbjct: 119 VQSNGDQFLRYVNLLGVTYSSPTLATG 145
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 2e-09
Identities = 46/394 (11%), Positives = 101/394 (25%), Gaps = 117/394 (29%)
Query: 2 SGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVY 61
SGK +A + V K I K + E + ++ +
Sbjct: 161 SGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSP--ETVLEMLQKL-------L 206
Query: 62 SGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLI 121
+ P++ + I + + +++ +P+ LL+
Sbjct: 207 YQIDPNWTSRSDHSSNIKL----------RIHSIQAELRRLLKS-------KPYENCLLV 249
Query: 122 CG--WDNK--RPYLYQC-------DPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELD 170
+ K + C F AT + + L + L L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LL 308
Query: 171 DAVHTAILTLKEGFEGQMTAEN---IEIGIADENGFRRLDVATVRDHLSNIPQSVHTAIL 227
+ L ++ N + I IA ++RD L+ H
Sbjct: 309 KYLDCRPQDLPR----EVLTTNPRRLSI-IA----------ESIRDGLATWDNWKHVNCD 353
Query: 228 TLKEGFEGQMTAENIEIGIADENGFRRL---------DVATENIPTQQLV--------QR 270
L E + + + +R++ +IPT L
Sbjct: 354 KLTTIIE--SSLNVL-----EPAEYRKMFDRLSVFPPSA---HIPTILLSLIWFDVIKSD 403
Query: 271 VAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTF 330
V ++ + + SL+ + Y K ++ ++
Sbjct: 404 VMVVVNKLHKY--------SLVEKQPKESTISIPSI-----YLELKVKLENEYALH-RSI 449
Query: 331 LEKREKLR-------VP--------NFCGYHIAE 349
++ + +P + G+H+
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Score = 38.3 bits (88), Expect = 0.004
Identities = 46/334 (13%), Positives = 101/334 (30%), Gaps = 90/334 (26%)
Query: 30 IVLATEKKQKT-ILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE 88
I+++ + T LF + K E + V + +Y+ L+ + +Q ++ +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 89 NIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPS------GAYFA 142
I + + + +Y S R L R L + P+ G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVS---RLQPYLKL-------RQALLELRPAKNVLIDG---- 157
Query: 143 WKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI--LTLKEGFEGQMTAENIEIGIADE 200
+ + GKT++ ++ + I L LK + E ++
Sbjct: 158 -----VLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ------ 203
Query: 201 NGFRRLD--VATVRDHLSNIPQSVHTAILTLK------------------------EGFE 234
++D + DH SNI +H+ L+ F
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 235 GQ----MTAENIEIGIADENGFRRLDVATENIP-------TQQLVQRVAAI-MQEY-TQS 281
+T ++ + ++ ++ + L+ + Q+ +
Sbjct: 264 LSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 282 GGVRPFGVSLL-------ICGWDNKRPYL-YQCD 307
P +S++ + WDN + CD
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDN---WKHVNCD 353
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 4e-07
Identities = 39/251 (15%), Positives = 72/251 (28%), Gaps = 85/251 (33%)
Query: 37 KQKTILFEDCIHKVEPITD-YIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQL 95
TI F K + I + Y M++ + D +L +K K ++ Y L
Sbjct: 1670 VNLTIHFGG--EKGKRIRENYSAMIFETI-VDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 96 VQRVAAIMQEYTQSGGVRP--FGVSLLICGWDNKRPYLYQC------DPSGAYFAWKATA 147
++TQ P + ++ P+ A FA
Sbjct: 1727 SA------TQFTQ-----PALTLMEKAA----------FEDLKSKGLIPADATFA----- 1760
Query: 148 MG---RNYVNGKTFLEKRYSEDLELDDA-VHTA-ILTLKEGFE-----GQMTAENIEIGI 197
G G E Y+ A A +++++ E G +
Sbjct: 1761 -GHSL-----G----E--YA-------ALASLADVMSIESLVEVVFYRGMTMQVAVP--- 1798
Query: 198 ADENGFRRLDVATVRDHLSNIPQSVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDV 257
DE G + + P V + Q + + + G+ +++
Sbjct: 1799 RDELGRSNYGMIAIN------PGRVAASF--------SQEALQYVVERVGKRTGWL-VEI 1843
Query: 258 ATENIPTQQLV 268
N+ QQ V
Sbjct: 1844 VNYNVENQQYV 1854
Score = 31.2 bits (70), Expect = 0.63
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 44/124 (35%)
Query: 171 DAVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNIPQSVHTAILTLK 230
DA T LTL G ++E + +P + L+
Sbjct: 2 DAYSTRPLTLSHG--------SLEHVL-------------------LVPTASFFIASQLQ 34
Query: 231 EGFEGQMTAENIEIGIADEN-----------GFRRLDVATENIPTQ--QLVQRVAAIMQE 277
E F + DE G+ V++ P++ Q Q + + E
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGY----VSSLVEPSKVGQFDQVLNLCLTE 90
Query: 278 YTQS 281
+
Sbjct: 91 FENC 94
Score = 30.4 bits (68), Expect = 1.1
Identities = 47/245 (19%), Positives = 67/245 (27%), Gaps = 72/245 (29%)
Query: 8 IEYALAAVEAGAPS--VGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIG------- 58
+E +L E G PS + I L E+ Q + + H I
Sbjct: 324 LEDSLENNE-GVPSPMLSISN-----LTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKN 376
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVR----- 113
+V SG L RK L Q IP +R R
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGL-DQSRIP---FSERKLKF--------SNRFLPVA 424
Query: 114 -PFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMG---RNYVNGKTFLEKRYSEDLEL 169
PF LL+ D L D ++ A + + +G S +
Sbjct: 425 SPFHSHLLVPASD-----LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 170 DDA-----VH---------TAILTLKEGFE---GQMTAEN-------------IEIGIAD 199
D V T IL G G +T N ++I D
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Query: 200 ENGFR 204
+ GF+
Sbjct: 540 DYGFK 544
Score = 30.4 bits (68), Expect = 1.1
Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 37/117 (31%)
Query: 174 HTAILT-LKEGFEGQMTAENIEIGIAD--------ENG--FRRLDVATVRDHLSNI---- 218
H+ +L + + N+ D +G R L + + I
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 219 ---PQSVH---TAILTLKEGFE---GQMTAEN-------------IEIGIADENGFR 253
+ T IL G G +T N ++I D+ GF+
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.33
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 8/24 (33%)
Query: 4 KLVQIEYALAAVEAGAPSVGIKAS 27
KL YA + AP++ IKA+
Sbjct: 30 KL----YA----DDSAPALAIKAT 45
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT
facility, SSPF, nuclear protein; 1.79A {Lassa virus
josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Length = 577
Score = 29.2 bits (65), Expect = 2.5
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 85 VYQENIPTQQLVQRVAAI----MQEYTQSGGVRPFGVSLLICGWDNKRPYL 131
VY N+ +QQL QR A + M Q GV + WD K L
Sbjct: 132 VYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGVVRV---WDVKNAEL 179
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG,
structural genomics center for structural genomics; HET:
MSE TRP; 1.35A {Streptococcus pneumoniae}
Length = 295
Score = 28.8 bits (64), Expect = 2.6
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 45 DCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE-NIPTQQLVQRVAAIM 103
+ I + P IG +YS + + V++ + A++ L + +P+ + +M
Sbjct: 124 ELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVM 183
Query: 104 QE 105
Sbjct: 184 TS 185
>2qh8_A Uncharacterized protein; conserved domain protein, structural
genomics, PSI-2, MCSG, BIG_563.1, protein structure
initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar
eltor str} PDB: 3lkv_A*
Length = 302
Score = 28.4 bits (63), Expect = 3.2
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 47 IHKVEPITDYIGMVYSGMGPDYRLLVKKARKIAQQYKLVYQE-NIPTQQLVQRVAAIMQE 105
I ++ P IG+VY+ + L++ + A ++ + E VQ + E
Sbjct: 133 IKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAE 192
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT;
1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A*
3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A*
3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A*
3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ...
Length = 903
Score = 27.6 bits (60), Expect = 7.6
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 13/52 (25%)
Query: 103 MQEYTQSGGVRPFGVSLLICGWDNK----------RPYLYQCDPSGAYFAWK 144
+ Y V G S+ D+ +P L+ P +
Sbjct: 2 KEFYLT---VEQIGDSIFERYIDSNGRERTREVEYKPSLFAHCPESQATKYF 50
Score = 27.6 bits (60), Expect = 7.6
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 13/52 (25%)
Query: 275 MQEYTQSGGVRPFGVSLLICGWDNK----------RPYLYQCDPSGAYFAWK 316
+ Y V G S+ D+ +P L+ P +
Sbjct: 2 KEFYLT---VEQIGDSIFERYIDSNGRERTREVEYKPSLFAHCPESQATKYF 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,548,955
Number of extensions: 340252
Number of successful extensions: 1008
Number of sequences better than 10.0: 1
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 130
Length of query: 352
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,049,298
Effective search space: 1040669586
Effective search space used: 1040669586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)