RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2869
(352 letters)
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 191 bits (487), Expect = 3e-60
Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 7/225 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED-CIHKVEPITDYIGM 59
P G+L Q+EY + A++ G+ ++GI+ S G+ LA EK+ + L E I K+ I +IG
Sbjct: 10 PEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGC 69
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG-----VRP 114
SG+ D + L+ KAR Q + Y E + + + Q V+ + ++ + RP
Sbjct: 70 AMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRP 129
Query: 115 FGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVH 174
FGV+LL G D K P L+ DPSG + A A+G ++ L++ Y + + L +A+
Sbjct: 130 FGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIK 189
Query: 175 TAILTLKEGFEGQMTAENIEIGIADEN-GFRRLDVATVRDHLSNI 218
++++ LK+ E ++ A NIE+ F + + + +I
Sbjct: 190 SSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 234
Score = 72.0 bits (176), Expect = 3e-15
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGG-----VRPFGVSLLICGWDNKRPYLYQCDPSGAYFA 314
E + + + Q V+ + ++ + RPFGV+LL G D K P L+ DPSG +
Sbjct: 98 ETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQ 157
Query: 315 WKATAMGRNYVNGKTFLEKREK 336
A A+G ++ L++
Sbjct: 158 CDARAIGSASEGAQSSLQELYH 179
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 191 bits (487), Expect = 3e-60
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 7/225 (3%)
Query: 1 PSGKLVQIEYALAAVE-AGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A+ G SV ++ + V+ T+KK L + + + IT+ IG
Sbjct: 17 PEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIG 76
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
V +GM D R V++AR A +K Y IP L +R+A I Q YTQ+ +RP G
Sbjct: 77 CVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCC 136
Query: 119 LLICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSED--LELDDAVHT 175
+++ G D + P +Y+CDP+G Y +KATA G +FLEK+ + + V T
Sbjct: 137 MILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVET 196
Query: 176 AILTLKEGFEGQMTAENIEIGI--ADENGFRRLDVATVRDHLSNI 218
AI L IE+G+ + FR L A + HL +
Sbjct: 197 AITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 241
Score = 72.7 bits (178), Expect = 2e-15
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKAT 318
IP L +R+A I Q YTQ+ +RP G +++ G D + P +Y+CDP+G Y +KAT
Sbjct: 106 YEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKAT 165
Query: 319 AMGRNYVNGKTFLEKREK 336
A G +FLEK+ K
Sbjct: 166 AAGVKQTESTSFLEKKVK 183
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 188 bits (478), Expect = 4e-59
Identities = 90/217 (41%), Positives = 127/217 (58%), Gaps = 2/217 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED-CIHKVEPITDYIGM 59
P G+L Q+EYA AV+ G+ ++G+K +NG++L ++KK ++ L E I K++ I DY+
Sbjct: 5 PDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAA 64
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
V SG+ D R+LV AR AQQ K+ Y + + LV+RVA MQ+YTQ GGVRP+GVSL
Sbjct: 65 VTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSL 124
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
+ G D P L+ CDP+G +KATA+G +FLE+ Y E+L +AV I
Sbjct: 125 IFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKA 184
Query: 180 LKEGFEGQMTAENIEIG-IADENGFRRLDVATVRDHL 215
LK E + EI I N +R D V+ L
Sbjct: 185 LKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 221
Score = 72.0 bits (176), Expect = 2e-15
Identities = 36/77 (46%), Positives = 48/77 (62%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+ + LV+RVA MQ+YTQ GGVRP+GVSL+ G D P L+ CDP+G +KATA
Sbjct: 93 SLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATA 152
Query: 320 MGRNYVNGKTFLEKREK 336
+G +FLE+ K
Sbjct: 153 IGSGKDAVVSFLEREYK 169
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 188 bits (478), Expect = 5e-59
Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 6/225 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P G++ QIEYA+ AV+ G+ +VG+K+ VL K+ ++ L K+ + ++IG+
Sbjct: 12 PQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH-QKKILHVDNHIGIS 70
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLL 120
+G+ D RLL R+ + V+ +P +LV + + Q TQ G RP+GV LL
Sbjct: 71 IAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLL 130
Query: 121 ICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELD--DAVHTAIL 178
I G+D+ P+++Q PS YF +A ++G + +T+LE+ SE +E + + V +
Sbjct: 131 IAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLR 190
Query: 179 TLKE--GFEGQMTAENIEIGIADEN-GFRRLDVATVRDHLSNIPQ 220
L+E E +T +N+ IGI ++ F D V L + +
Sbjct: 191 ALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEE 235
Score = 79.3 bits (195), Expect = 7e-18
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+P +LV + + Q TQ G RP+GV LLI G+D+ P+++Q PS YF +A +
Sbjct: 98 RPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMS 157
Query: 320 MGRNYVNGKTFLEKREK 336
+G + +T+LE+
Sbjct: 158 IGARSQSARTYLERHMS 174
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 187 bits (477), Expect = 1e-58
Identities = 73/214 (34%), Positives = 108/214 (50%), Gaps = 8/214 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+ Q+EYA+ AVE G S+GIK ++G+V A EK + L K++ + +IG
Sbjct: 13 PDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGC 72
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
VYSG+ PD R LV + R+ A +K +Y+ IP R+ +Q +T VRPFGVS
Sbjct: 73 VYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVST 132
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEK---RYSEDLELDDAVHTA 176
+ G D +LY +PSG+Y+ +K A G+ + K LEK + E L +AV A
Sbjct: 133 IFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQA 192
Query: 177 ILTLKEGFEGQM-TAENIEIGIA---DENGFRRL 206
+ E +EI + NG +
Sbjct: 193 AKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 226
Score = 78.1 bits (192), Expect = 2e-17
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
IP R+ +Q +T VRPFGVS + G D +LY +PSG+Y+ +K A
Sbjct: 101 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA 160
Query: 320 MGRNYVNGKTFLEKREK 336
G+ + K LEK
Sbjct: 161 TGKGRQSAKAELEKLVD 177
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 187 bits (477), Expect = 1e-58
Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 5/220 (2%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G++ Q+EYA+ AVE + ++GI+ +G+V EK + L+E ++ + ++GM
Sbjct: 16 PDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGM 75
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
+G+ D R L AR+ A ++ + NIP + L RVA + YT VRPFG S
Sbjct: 76 AVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSF 135
Query: 120 LICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAIL 178
++ + N LY DPSG + + A+G+ KT +EK +++ D V
Sbjct: 136 MLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAK 195
Query: 179 TLKEGF-EGQMTAENIEIGI--ADENGFRRLDVATVRDHL 215
+ E + A +E+ NG + +R+
Sbjct: 196 IIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEA 235
Score = 73.1 bits (179), Expect = 1e-15
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKAT 318
NIP + L RVA + YT VRPFG S ++ + N LY DPSG + +
Sbjct: 104 YNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC 163
Query: 319 AMGRNYVNGKTFLEKREK 336
A+G+ KT +EK +
Sbjct: 164 AIGKARQAAKTEIEKLQM 181
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 186 bits (473), Expect = 4e-58
Identities = 124/237 (52%), Positives = 156/237 (65%), Gaps = 19/237 (8%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
PSGKL QI+YAL AV+ G S+GIKA+NG+V+ATEKK + L + + KV +T IG
Sbjct: 14 PSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGA 73
Query: 60 VYSGMGPDYRLLVKKARKIAQ-QYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
VYSGMGPDYR+LV K+RK+A YK +Y E PT+ LV VA IMQE TQSGGVRPFGVS
Sbjct: 74 VYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVS 133
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
LLI G D LYQ DPSG+YF WKATA+G+ V KTFLEKR++++LEL+DA+H A+
Sbjct: 134 LLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIAL 193
Query: 178 LTLKEGFEGQMTAENIEIGIADENG----------------FRRLDVATVRDHLSNI 218
LTLKE EG+ + IE+ I + FR+L + D L +
Sbjct: 194 LTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL 250
Score = 72.1 bits (176), Expect = 3e-15
Identities = 51/78 (65%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
E PT+ LV VA IMQE TQSGGVRPFGVSLLI G D LYQ DPSG+YF WKAT
Sbjct: 103 EYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKAT 162
Query: 319 AMGRNYVNGKTFLEKREK 336
A+G+ V KTFLEKR
Sbjct: 163 AIGKGSVAAKTFLEKRWN 180
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 186 bits (472), Expect = 5e-58
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 10/228 (4%)
Query: 1 PSGKLVQIEYALAAVE-AGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIG 58
P G+L Q+EYA A S+ ++ + V+ ++KK L + + + I+ IG
Sbjct: 12 PEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIG 71
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
MV +G PD R +A+ A +++ Y ++P L +R+A + Q YTQ +RP GV
Sbjct: 72 MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVI 131
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDL-------ELD 170
L D + P +Y+ DP+G Y +KATA G T LE + + +
Sbjct: 132 LTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWE 191
Query: 171 DAVHTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNI 218
V AI + + + + ++E+G+A ++ F L + + L I
Sbjct: 192 KVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAI 239
Score = 68.2 bits (166), Expect = 6e-14
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
++P L +R+A + Q YTQ +RP GV L D + P +Y+ DP+G Y +KAT
Sbjct: 101 YDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160
Query: 319 AMGRNYVNGKTFLEKREK 336
A G T LE K
Sbjct: 161 ATGPKQQEITTNLENHFK 178
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 185 bits (471), Expect = 5e-58
Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 7/221 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMV 60
P+G+L Q+EYAL A++ G+ +VG++++ VL K+ L K+ +++G+
Sbjct: 14 PTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-SSYQKKIIKCDEHMGLS 72
Query: 61 YSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLL 120
+G+ PD R+L R+ LV+ + ++ + Q+ TQS G RP+GV LL
Sbjct: 73 LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLL 132
Query: 121 ICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE----DLELDDAVHTA 176
I G+D +L + PSG TA+G KT+LE+ D D+ +
Sbjct: 133 IIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAG 192
Query: 177 ILTLKEGF-EGQMTAENIEIGIAD-ENGFRRLDVATVRDHL 215
+ + + + +T +N+ I I + F D V ++
Sbjct: 193 VEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233
Score = 70.1 bits (171), Expect = 1e-14
Identities = 25/92 (27%), Positives = 38/92 (41%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+ ++ + Q+ TQS G RP+GV LLI G+D +L + PSG TA
Sbjct: 100 RKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTA 159
Query: 320 MGRNYVNGKTFLEKREKLRVPNFCGYHIAESL 351
+G KT+LE+ +
Sbjct: 160 IGARSQGAKTYLERTLDTFIKIDGNPDELIKA 191
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 184 bits (469), Expect = 1e-57
Identities = 82/228 (35%), Positives = 127/228 (55%), Gaps = 10/228 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G + Q+EYAL AV+ G +VG+K N +VL E++ L + KV I ++
Sbjct: 11 PDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVV 70
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +SG+ D R+L++KAR AQ ++L ++ + + L + VA + Q YTQSGGVRPFGVS
Sbjct: 71 LSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVS 130
Query: 119 LLICGWDNKR--PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE---DLELDDAV 173
LI G+D + P LYQ +PSG Y +W A +GRN + FLEK Y +++ V
Sbjct: 131 TLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECV 190
Query: 174 HTAILTLKEGFEGQMTAENIEIGIAD-ENGFRRLDVATVRDHLSNIPQ 220
+ +L E + A+NIEI + ++ L + +++ I Q
Sbjct: 191 KLTVRSLLEVVQ--TGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQ 236
Score = 68.9 bits (168), Expect = 4e-14
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR--PYLYQCDPSGAYFAWKA 317
+ + + L + VA + Q YTQSGGVRPFGVS LI G+D + P LYQ +PSG Y +W A
Sbjct: 100 DPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSA 159
Query: 318 TAMGRNYVNGKTFLEKR 334
+GRN + FLEK
Sbjct: 160 QTIGRNSKTVREFLEKN 176
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 183 bits (466), Expect = 3e-57
Identities = 172/219 (78%), Positives = 198/219 (90%), Gaps = 1/219 (0%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED-CIHKVEPITDYIGM 59
PSGKLVQIEYALAAV GAPSVGIKA+NG+VLATEKKQK+IL+++ +HKVEPIT +IG+
Sbjct: 14 PSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGL 73
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
VYSGMGPDYR+LV +ARK+AQQY LVYQE IPT QLVQRVA++MQEYTQSGGVRPFGVSL
Sbjct: 74 VYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSL 133
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
LICGW+ RPYL+Q DPSGAYFAWKATAMG+NYVNGKTFLEKRY+EDLEL+DA+HTAILT
Sbjct: 134 LICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILT 193
Query: 180 LKEGFEGQMTAENIEIGIADENGFRRLDVATVRDHLSNI 218
LKE FEGQMT +NIE+GI +E GFRRL V+D+L+ I
Sbjct: 194 LKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 232
Score = 57.4 bits (138), Expect = 3e-10
Identities = 65/77 (84%), Positives = 70/77 (90%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
E IPT QLVQRVA++MQEYTQSGGVRPFGVSLLICGW+ RPYL+Q DPSGAYFAWKATA
Sbjct: 102 EPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATA 161
Query: 320 MGRNYVNGKTFLEKREK 336
MG+NYVNGKTFLEKR
Sbjct: 162 MGKNYVNGKTFLEKRYN 178
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 182 bits (463), Expect = 1e-56
Identities = 85/221 (38%), Positives = 129/221 (58%), Gaps = 4/221 (1%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EYA AV+ GA ++GIK G++L +K+ + L E D I K+ I ++I
Sbjct: 14 PDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICA 73
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
SG+ D R+L+ +AR AQ +L Y I ++L +++ Q+YTQ GGVRPFGVSL
Sbjct: 74 ATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSL 133
Query: 120 LICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILT 179
LI G N+ P LY+ DPSGA +KATA+G + F EK Y +DL DDA+ ++
Sbjct: 134 LIAGV-NEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVA 192
Query: 180 LKEGFEGQMTAENIEIGI--ADENGFRRLDVATVRDHLSNI 218
+ E ++ ENIE+G D+ F+ + ++ ++
Sbjct: 193 MGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERA 233
Score = 53.9 bits (129), Expect = 5e-09
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
I ++L +++ Q+YTQ GGVRPFGVSLLI G N+ P LY+ DPSGA +KATA
Sbjct: 102 IPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGV-NEVPKLYETDPSGALLEYKATA 160
Query: 320 MGRNYVNGKTFLEKR 334
+G + F EK
Sbjct: 161 IGMGRMAVTEFFEKE 175
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 177 bits (450), Expect = 9e-55
Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 9/227 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE-DCIHKVEPITDYIGM 59
P G+L Q+EY+L A++ G+ ++GI G+VL EK+ + L E D I K+ I +IG
Sbjct: 9 PEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGC 68
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGG------VR 113
SG+ D R +++ AR A + L Y E+I + L Q V + + + R
Sbjct: 69 AMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSR 128
Query: 114 PFGVSLLICGWD-NKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDA 172
PFGV+LLI G D + L+ +PSG ++ + A A+G + L + L L +A
Sbjct: 129 PFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEA 188
Query: 173 VHTAILTLKEGFEGQMTAENIEIG-IADENGFRRLDVATVRDHLSNI 218
+ LK+ E ++ N ++ I ++GF+ D + + +
Sbjct: 189 ELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKEL 235
Score = 55.1 bits (132), Expect = 2e-09
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGG------VRPFGVSLLICGWD-NKRPYLYQCDPSGAY 312
E+I + L Q V + + + RPFGV+LLI G D + L+ +PSG +
Sbjct: 97 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTF 156
Query: 313 FAWKATAMGRNYVNGKTFLEKREK 336
+ + A A+G + L
Sbjct: 157 YRYNAKAIGSGSEGAQAELLNEWH 180
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 177 bits (449), Expect = 2e-54
Identities = 81/227 (35%), Positives = 118/227 (51%), Gaps = 9/227 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G+L Q+EYA+ A+ +GI A++G++LA E++ L + K+ + + +
Sbjct: 13 PEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMA 72
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+G+ D +L + R IAQ+Y L YQE IP +QLV + I Q YTQ GG RPFGVS
Sbjct: 73 CSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVS 132
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSE-DLELDDAVHTA 176
LL GWD LYQ DPSG Y WKAT +G N + L++ Y E ++ L A+ A
Sbjct: 133 LLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALA 192
Query: 177 ILTLKEGFE-GQMTAENIEIGIADENG----FRRLDVATVRDHLSNI 218
I L + + +++AE +EI R L V +
Sbjct: 193 IKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKH 239
Score = 63.9 bits (155), Expect = 2e-12
Identities = 39/76 (51%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
E IP +QLV + I Q YTQ GG RPFGVSLL GWD LYQ DPSG Y WKAT
Sbjct: 102 EPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKAT 161
Query: 319 AMGRNYVNGKTFLEKR 334
+G N + L++
Sbjct: 162 CIGNNSAAAVSMLKQD 177
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 174 bits (443), Expect = 1e-53
Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 10/225 (4%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFE--DCIHKVEPITDYIG 58
P G+L Q+EYAL ++ ++GI AS+GIVLA E+K + L E K+ + D I
Sbjct: 14 PEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIA 73
Query: 59 MVYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVS 118
+ +G+ D +L+ AR AQ Y Y E+IP + LV+R++ I Q YTQ GG+RPFGVS
Sbjct: 74 VAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVS 133
Query: 119 LLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
+ G+D++ LY +PSG Y WKA ++G N +T L+ Y +D+++DDA+ A+
Sbjct: 134 FIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELAL 193
Query: 178 LTLKEGFEGQ-MTAENIEIGIADENG------FRRLDVATVRDHL 215
TL + + +T + +E + + ++D L
Sbjct: 194 KTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDIL 238
Score = 62.8 bits (152), Expect = 6e-12
Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
E+IP + LV+R++ I Q YTQ GG+RPFGVS + G+D++ LY +PSG Y WKA
Sbjct: 103 EDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162
Query: 319 AMGRNYVNGKTFLEKREK 336
++G N +T L+ K
Sbjct: 163 SVGANTSAAQTLLQMDYK 180
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 174 bits (442), Expect = 1e-53
Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 7/223 (3%)
Query: 1 PSGKLVQIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFED-CIHKVEPITDYIGM 59
P G L Q+EYA AV+ G+ +VG++ + +VL EKK L ++ + K+ + D + M
Sbjct: 11 PDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCM 70
Query: 60 VYSGMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSL 119
++G+ D R+++ +AR Q ++L ++ + + + + +A++ Q YTQS G RPFG+S
Sbjct: 71 AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISA 130
Query: 120 LICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDD--AVHTA 176
LI G+D P LYQ DPSG Y AWKA A+GR + + FLEK Y+++ D +
Sbjct: 131 LIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLV 190
Query: 177 ILTLKEGFEGQMTAENIEIGIAD-ENGFRRLDVATVRDHLSNI 218
I L E Q +NIE+ + + + L+ + +++ I
Sbjct: 191 IKALLE--VVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEI 231
Score = 68.9 bits (168), Expect = 4e-14
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
+ + + + + +A++ Q YTQS G RPFG+S LI G+D P LYQ DPSG Y AWKA
Sbjct: 99 DPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKAN 158
Query: 319 AMGRNYVNGKTFLEKREK 336
A+GR + + FLEK
Sbjct: 159 AIGRGAKSVREFLEKNYT 176
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 167 bits (423), Expect = 8e-51
Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 20/224 (8%)
Query: 7 QIEYALAAVEAGAPSVGIKASNGIVLATEKKQKTILFEDCIHKVEPITDYIGMVYSGMGP 66
+ E A + G V + +G++ E + HKV + D +G G
Sbjct: 8 RSELARKGIARGRSVVVLTFRDGVLFVAENPSTAL------HKVSELYDRLGFAAVGKYN 61
Query: 67 DYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD- 125
++ L + A Y T + + A + +P+ V + +
Sbjct: 62 EFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGR 121
Query: 126 ---NKRPYLYQCDPSGAYFAWKATAMGR-NYVNGKTFLEKRYSEDLELDDAVHTAILTLK 181
K P LY+ G+ + + T + + Y DL+L+ AV A+ L+
Sbjct: 122 VGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALR 181
Query: 182 EGFEGQM-----TAENIEIGIADENG----FRRLDVATVRDHLS 216
+G G+ ++E+ + D++ FRR+ + +
Sbjct: 182 QGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVP 225
Score = 55.8 bits (134), Expect = 9e-10
Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 6/103 (5%)
Query: 239 AENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD- 297
EN+ R ++ + L A + +P+ V + +
Sbjct: 63 FENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQ-TLGTIFTEQPKPYEVEICVAEVGR 121
Query: 298 ---NKRPYLYQCDPSGAYFAWKATAMGR-NYVNGKTFLEKREK 336
K P LY+ G+ + + T + + +
Sbjct: 122 VGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR 164
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 119 bits (300), Expect = 4e-33
Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 9/198 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ K +G+++A + + I + KV I Y+ +G D + +
Sbjct: 4 LAFKFRHGVIVAADSRATAGAYIASQTV-KKVIEINPYLLGTMAGGAADCSFWERLLARQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSG 138
+ Y+L +E I + +A ++ +Y + +ICGWD + P LY D G
Sbjct: 63 CRIYELRNKERISVAAASKLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEG 118
Query: 139 AYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE-GQMTAENIEIGI 197
+ ++G V +++ YS DLE++ A A + + + + +
Sbjct: 119 NRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYH 178
Query: 198 ADENGFRRLDVATVRDHL 215
E+G+ R+ V D
Sbjct: 179 VREDGWIRVSSDNVADLH 196
Score = 44.4 bits (104), Expect = 6e-06
Identities = 12/65 (18%), Positives = 24/65 (36%)
Query: 272 AAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 331
+ ++ + +ICGWD + P LY D G + ++G V +
Sbjct: 80 SKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVM 139
Query: 332 EKREK 336
++
Sbjct: 140 DRGYS 144
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 119 bits (299), Expect = 7e-33
Identities = 42/195 (21%), Positives = 86/195 (44%), Gaps = 7/195 (3%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
+GI+ + ++LA+ K + + +D K ++ + M ++G D + +
Sbjct: 5 LGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANI 64
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK--RPYLYQCDPS 137
Q Y + + Q + V + + +S RP+ V++LI G+D K +P LYQ D
Sbjct: 65 QLYSIREDYELSPQAVSSFVRQELAKSIRSR--RPYQVNVLIGGYDKKKNKPELYQIDYL 122
Query: 138 GAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-QMTAENIEIG 196
G A G + + L+ Y D+ ++ + L ++E + M + + +
Sbjct: 123 GTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVK 182
Query: 197 IADENGFRRLDVATV 211
I D++G R++D
Sbjct: 183 IVDKDGIRQVDDFQA 197
Score = 42.1 bits (98), Expect = 3e-05
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 261 NIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK--RPYLYQCDPSGAYFAWKAT 318
+ Q + V + + +S RP+ V++LI G+D K +P LYQ D G
Sbjct: 74 ELSPQAVSSFVRQELAKSIRSR--RPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYG 131
Query: 319 AMGRNYVNGKTFLEKREK 336
A G + + L+ +
Sbjct: 132 AHGYSGFYTFSLLDHHYR 149
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 118 bits (296), Expect = 3e-32
Identities = 42/217 (19%), Positives = 75/217 (34%), Gaps = 24/217 (11%)
Query: 18 GAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKA 75
G +GI + VLA + + + KV D I M +G D LVK+
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 76 RKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQC 134
+ + Y + + + + A +Q P+ V +I G D +Y
Sbjct: 69 KNSVKWYHFDHNDKKLS---INSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSF 125
Query: 135 DPSGAYFAWKATAMGRNYVNGKTFLEKRY-----------------SEDLELDDAVHTAI 177
DP G+Y + A G FL+ + + L +++ +
Sbjct: 126 DPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVR 185
Query: 178 LTLKEGFEGQM-TAENIEIGIADENGFRRLDVATVRD 213
+ E + + +EI I ++G R+ RD
Sbjct: 186 DSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222
Score = 53.6 bits (128), Expect = 5e-09
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 268 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVN 326
+ A +Q P+ V +I G D +Y DP G+Y + A G
Sbjct: 86 INSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASL 145
Query: 327 GKTFLEKREKLR 338
FL+ + +
Sbjct: 146 IMPFLDNQVNFK 157
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 114 bits (285), Expect = 6e-31
Identities = 43/203 (21%), Positives = 93/203 (45%), Gaps = 11/203 (5%)
Query: 21 SVGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARK 77
+VGI + +++ATE++ + I+ ++ K+ I Y GM +G+ D ++LV+ +
Sbjct: 3 TVGITLKDAVIMATERRVTMENFIMHKNG-KKLFQIDTYTGMTIAGLVGDAQVLVRYMKA 61
Query: 78 IAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPS 137
+ Y+L + N+P ++ VA ++ P+ V LL+ G D P+++ D +
Sbjct: 62 ELELYRLQRRVNMP----IEAVATLLSNMLNQVKYMPYMVQLLVGGIDTA-PHVFSIDAA 116
Query: 138 GAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE-GQMTAENIEIG 196
G + G LE +YSE + +D+ V I + + + I++
Sbjct: 117 GGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVA 176
Query: 197 IAD-ENGFRRLDVATVRDHLSNI 218
+ ++G+ +L + + +
Sbjct: 177 VITRKDGYVQLPTDQIESRIRKL 199
Score = 40.2 bits (93), Expect = 1e-04
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 268 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNG 327
++ VA ++ P+ V LL+ G D P+++ D +G + G
Sbjct: 76 IEAVATLLSNMLNQVKYMPYMVQLLVGGIDTA-PHVFSIDAAGGSVEDIYASTGSGSPFV 134
Query: 328 KTFLEKREK 336
LE +
Sbjct: 135 YGVLESQYS 143
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 113 bits (284), Expect = 1e-30
Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 8/200 (4%)
Query: 21 SVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+VG+ +G+V+ATEK+ + K+ I D + M +G D + L + +
Sbjct: 3 TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSG 138
A Y++ + + + + S P+ V LLI G D++ +Y DP G
Sbjct: 63 ANLYEIRRERKPTVRAIAT----LTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIG 118
Query: 139 AYFAWK-ATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE-GQMTAENIEIG 196
K A G + LE R++ ++ +D+AV A+ + + + + I++
Sbjct: 119 GAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVV 178
Query: 197 IADENGFRRLDVATVRDHLS 216
E+ F + V L+
Sbjct: 179 KITEDEFYQYSPEEVEQILA 198
Score = 40.6 bits (94), Expect = 1e-04
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 268 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWK-ATAMGRNYVN 326
V+ +A + S P+ V LLI G D++ +Y DP G K A G +
Sbjct: 76 VRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLT 135
Query: 327 GKTFLEKREK 336
LE R
Sbjct: 136 AYGVLEDRFT 145
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 111 bits (279), Expect = 8e-30
Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 8/193 (4%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
G+ +GIVL + + + ++ + K+ I+ I +G D + +
Sbjct: 4 AGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNL 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 139
+ + L + + ++ Y G +L++ G D P+LY P G+
Sbjct: 64 ELHSLSTGRLPRVVTANRMLKQMLFRYR-----GYIGAALVLGGVDVTGPHLYSIYPHGS 118
Query: 140 YFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEG-FEGQMTAENIEIGIA 198
MG + E ++ D+E ++A + + G F + NI++ +
Sbjct: 119 TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVI 178
Query: 199 DENGFRRLDVATV 211
+N L TV
Sbjct: 179 SKNKLDFLRPYTV 191
Score = 43.2 bits (101), Expect = 2e-05
Identities = 14/67 (20%), Positives = 23/67 (34%)
Query: 270 RVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKT 329
A M + G +L++ G D P+LY P G+ MG +
Sbjct: 77 VTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMA 136
Query: 330 FLEKREK 336
E + +
Sbjct: 137 VFEDKFR 143
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 110 bits (277), Expect = 2e-29
Identities = 29/236 (12%), Positives = 75/236 (31%), Gaps = 21/236 (8%)
Query: 14 AVEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLL 71
+ G + +K NG+++A + ++L + + ++ P+ D + SG D + +
Sbjct: 4 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 63
Query: 72 VKKARKIAQQYKLVYQENIPTQQLVQRVAAIM---QEYTQSGGVRPFGVSLLICGWDNKR 128
+ + + + + L Y + + P ++++ G +
Sbjct: 64 ERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG 123
Query: 129 P-YLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKRY-----SEDLELDDAVHTAILTLKE 182
+L + G ++ A G L K + A + ++
Sbjct: 124 DQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRV 183
Query: 183 GFEGQ-MTAENIEIGIAD-ENGFRRLDVATVRDHLSNIPQSVHTAILTLKEGFEGQ 236
+ ++ N + I D G V +++ +G+ Q
Sbjct: 184 LYYRDARSSRNFSLAIIDKNTGLTFKKNLQV--------ENMKWDFAKDIKGYGTQ 231
Score = 44.4 bits (104), Expect = 7e-06
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 3/115 (2%)
Query: 223 HTAILTLKEGFEGQMTAENIEIGIADENGFRRLDVATENIPTQQLVQRVAAIMQEYTQSG 282
+T + + + Q ++ + + L A E + + + +A +M Y +
Sbjct: 48 NTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRS 105
Query: 283 GVRPFGVSLLICGWDNKRP-YLYQCDPSGAYFAWKATAMGRNYVNGKTFLEKREK 336
+ P ++++ G + +L + G ++ A G L K
Sbjct: 106 KMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD 160
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 109 bits (273), Expect = 4e-29
Identities = 29/204 (14%), Positives = 73/204 (35%), Gaps = 10/204 (4%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKI 78
+ + GI++A + + + + +V I ++ +G D +
Sbjct: 4 LAFRFQGGIIVAVDSRATAGNWVASQTV-KRVIEINPFLLGTMAGGAADCQFWETWLGSQ 62
Query: 79 AQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPS 137
+ ++L +E I + ++ ++ +Y + +ICG+ K P +Y D
Sbjct: 63 CRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSD 118
Query: 138 GAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE-GQMTAENIEIG 196
G +G L+ Y DL ++DA++ ++ + ++ +
Sbjct: 119 GTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLY 178
Query: 197 IADENGFRRLDVATVRDHLSNIPQ 220
E+G+ V + + +
Sbjct: 179 HVTEDGWIYHGNHDVGELFWKVKE 202
Score = 40.9 bits (95), Expect = 7e-05
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 268 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKATAMGRNYVN 326
V + I+ + +ICG+ K P +Y D G +G
Sbjct: 76 VAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTF 135
Query: 327 GKTFLEKREK 336
L+ K
Sbjct: 136 AYGVLDSNYK 145
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 106 bits (265), Expect = 7e-28
Identities = 35/199 (17%), Positives = 77/199 (38%), Gaps = 12/199 (6%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
VG+K +NG+V+A + + Q I+ + K+ I+ I +G D + +
Sbjct: 4 VGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNI 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGA 139
+ + L +Q + + +Y G L++ G D +L+ G+
Sbjct: 64 ELHSLYTSREPRVVSALQMLKQHLFKYQG-----HIGAYLIVAGVDPTGSHLFSIHAHGS 118
Query: 140 YFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQM-TAENIEIGIA 198
++G + LE + +DL ++A+ A ++ G + + N+++ +
Sbjct: 119 TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVM 178
Query: 199 DENG----FRRLDVATVRD 213
+ R VR+
Sbjct: 179 EIGKDAEYLRNYLTPNVRE 197
Score = 40.9 bits (95), Expect = 8e-05
Identities = 12/65 (18%), Positives = 21/65 (32%)
Query: 272 AAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATAMGRNYVNGKTFL 331
A M + G L++ G D +L+ G+ ++G + L
Sbjct: 79 ALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVL 138
Query: 332 EKREK 336
E K
Sbjct: 139 ESHWK 143
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 103 bits (258), Expect = 6e-27
Identities = 29/202 (14%), Positives = 71/202 (35%), Gaps = 10/202 (4%)
Query: 18 GAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKA 75
G + +K N + +A +++ + L K+ P+ D + + +G+ D + + ++
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66
Query: 76 RKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRP--YLYQ 133
+ Y+L I L+ VA ++ E P+ +I G D K ++
Sbjct: 67 KFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF----GPYYTEPVIAGLDPKTFKPFICS 122
Query: 134 CDPSGAYFAWKATAMGRNYVNG-KTFLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAE 191
D G + E + +++ D T + + ++
Sbjct: 123 LDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGM 182
Query: 192 NIEIGIADENGFRRLDVATVRD 213
+ + I +++ + D
Sbjct: 183 GVIVHIIEKDKITTRTLKARMD 204
Score = 39.4 bits (91), Expect = 2e-04
Identities = 7/69 (10%), Positives = 18/69 (26%), Gaps = 2/69 (2%)
Query: 268 VQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRP--YLYQCDPSGAYFAWKATAMGRNYV 325
+ +++ P+ +I G D K ++ D G +
Sbjct: 83 PYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCA 142
Query: 326 NGKTFLEKR 334
+ +
Sbjct: 143 EQMYGMCES 151
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 102 bits (255), Expect = 2e-26
Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 9/188 (4%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
+ ++ G+VL + + + + K+ PI D I SG D + +
Sbjct: 4 MAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQL 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSG 138
+ + E + Y + ++I GWD + +Y G
Sbjct: 64 GFHSIELNEPPLVHTAASLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGG 118
Query: 139 AYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGI 197
G +++ Y E + ++ + L E + I +
Sbjct: 119 MMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 178
Query: 198 ADENGFRR 205
E+G R
Sbjct: 179 IAESGVER 186
Score = 40.5 bits (94), Expect = 1e-04
Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 6/78 (7%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKR-PYLYQCDPSGAYFAWKAT 318
E + Y + ++I GWD + +Y G
Sbjct: 72 EPPLVHTAASLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFA 126
Query: 319 AMGRNYVNGKTFLEKREK 336
G +++ +
Sbjct: 127 IGGSGSSYIYGYVDATYR 144
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 101 bits (253), Expect = 4e-26
Identities = 26/207 (12%), Positives = 69/207 (33%), Gaps = 8/207 (3%)
Query: 14 AVEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLL 71
+ G +G+K G+V+A + ++ I ++ + + + SG D++ L
Sbjct: 4 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYL 63
Query: 72 VKKARKIAQQYKLVYQ-ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY 130
+ ++ +L+ + + + + M Y++ + P +++I G+ + +
Sbjct: 64 KQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYADGESF 121
Query: 131 LYQCDPSGAYFAWKA--TAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQ- 187
L D G + + T G L +A ++ +
Sbjct: 122 LGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDA 181
Query: 188 MTAENIEIGIADENGFRRLDVATVRDH 214
+ + E G + +
Sbjct: 182 RSYNRFQTATVTEKGVEIEGPLSTETN 208
Score = 38.6 bits (89), Expect = 5e-04
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 260 ENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPSGAYFAWKATA 319
+ + + + M Y++ + P +++I G+ + +L D G + + A
Sbjct: 81 HSYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLA 138
Query: 320 MGRNYVNGKTFLEK 333
G + L +
Sbjct: 139 TGYGAYLAQPLLRE 152
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 99.5 bits (247), Expect = 2e-25
Identities = 37/195 (18%), Positives = 77/195 (39%), Gaps = 6/195 (3%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
+GI+ + +++A+++ + +D K+ +++ I ++ G D + +K
Sbjct: 5 IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNV 64
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPY-LYQCDPSG 138
Q YK+ + + + +S P+ V+LL+ G+D LY D
Sbjct: 65 QLYKMRNGYELSPTAAANFTRRNLADCLRSRT--PYHVNLLLAGYDEHEGPALYYMDYLA 122
Query: 139 AYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAENIEIGI 197
A A G + L++ Y+ + + AV L+E + + + I
Sbjct: 123 ALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRI 182
Query: 198 ADENGFRRLDVATVR 212
D+NG LD +
Sbjct: 183 IDKNGIHDLDNISFP 197
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 97.6 bits (242), Expect = 2e-24
Identities = 38/215 (17%), Positives = 81/215 (37%), Gaps = 19/215 (8%)
Query: 22 VGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKARKIA 79
V + G++LA +++ Q ++ + KV +Y +G LV+
Sbjct: 4 VALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVEL 63
Query: 80 QQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDN------KRPYLYQ 133
+ Y+ + + R+A++++ + ++ V L+ G+D + +
Sbjct: 64 EHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVS 122
Query: 134 CDPSGAYFAWKA--TAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE------ 185
D G + +A A+G + K+ L+K YS D + + A+ AI +L + +
Sbjct: 123 YDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATG 182
Query: 186 GQMTAENIEIGIA--DENGFRRLDVATVRDHLSNI 218
G I + G + T + I
Sbjct: 183 GPDLTRGIYPTAVTITQAGAVHVSEETTSELARRI 217
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 92.2 bits (228), Expect = 1e-22
Identities = 31/202 (15%), Positives = 74/202 (36%), Gaps = 11/202 (5%)
Query: 18 GAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKA 75
G V + + + +A + + +++ + K+ ++ + +G+ D L +
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMF 66
Query: 76 RKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWD--NKRPYLYQ 133
R YKL + I + Q V++ + E P+ V ++ G + + +P++
Sbjct: 67 RYKTNLYKLKEERAIEPETFTQLVSSSLYERRF----GPYFVGPVVAGINSKSGKPFIAG 122
Query: 134 CDPSGAYFAWKATAMGRNYVNG-KTFLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTAE 191
D G K + + E Y +LE +D T L + ++
Sbjct: 123 FDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGW 182
Query: 192 NIEIGIADENGFRRLDVATVRD 213
+ I ++ + + +D
Sbjct: 183 GAVVYIIKKDEVVKRYLKMRQD 204
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 91.7 bits (227), Expect = 1e-22
Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 10/196 (5%)
Query: 15 VEAGAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLV 72
V GA + + +G++L + + + K+ + D I SG D + +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 73 KKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNK-RPYL 131
+ + Y Y AA + + +++ G+D+K + +
Sbjct: 66 DIVQYHLELYTSQYGTPS------TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 119
Query: 132 YQCDPSGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQ-MTA 190
Y G+ G + +K + E++ ++ V +L + + +
Sbjct: 120 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 179
Query: 191 ENIEIGIADENGFRRL 206
I + + G RL
Sbjct: 180 GVIRMVVLTAAGVERL 195
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 80.7 bits (198), Expect = 2e-18
Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 17/209 (8%)
Query: 18 GAPSVGIKASNGIVLATEKK--QKTILFEDCIHKVEPITDYIGMVYSGMGPDYRLLVKKA 75
G + I + ++A++ + + + K +TD + SG D L K
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 76 RKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYL-YQC 134
+ YK + + T + ++ I+ P+ V +I G D + Y
Sbjct: 69 EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRF----FPYYVYNIIGGLDEEGKGAVYSF 124
Query: 135 DPSGAYFAWKATAMG---------RNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE 185
DP G+Y A G + G ++ L LD A+ E
Sbjct: 125 DPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 184
Query: 186 GQ-MTAENIEIGIADENGFRRLDVATVRD 213
T + + I I + G R V+ +D
Sbjct: 185 RDVYTGDALRICIVTKEGIREETVSLRKD 213
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 38.6 bits (89), Expect = 4e-04
Identities = 22/183 (12%), Positives = 48/183 (26%), Gaps = 21/183 (11%)
Query: 22 VGIKASNGIVLATEKK---QKTILFEDCIHKVEPITDYIGMV-YSGMGPDYRLLVKKARK 77
++ ++ + + + ++ + KV + + + ++G D L +K
Sbjct: 9 FAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEA 68
Query: 78 IAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLICGWDNKRPYLYQCDPS 137
++Y + R ++++ V
Sbjct: 69 KLEEYNGNLKRAAVELAKEWRSDKVLRKL-----EAMLIVMNQDTLLLVSGTGEVIEPDD 123
Query: 138 GAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE------GQMTAE 191
G A G NY E A A L+ E Q+ E
Sbjct: 124 GIL----AIGSGGNYALA--AGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILE 177
Query: 192 NIE 194
+E
Sbjct: 178 ELE 180
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus
radiodurans [TaxId: 1299]}
Length = 199
Score = 31.0 bits (70), Expect = 0.15
Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 21/145 (14%)
Query: 63 GMGPDYRLLVKKARKIAQQYKLVYQENIPTQQLVQRVAAIMQEYTQSGGVRPFGVSLLIC 122
G+GP K A+++A + L Q ++L + ++ +
Sbjct: 19 GIGP------KSAQRLA--FHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCD 70
Query: 123 GWDNKRPYLYQC------------DPSGAYFAWKATAMGR-NYVNGKTFLEKRYSEDLEL 169
+ + SG Y G + +NG + L
Sbjct: 71 VCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPR 130
Query: 170 DDAVHTAILTLKEGFEGQMTAENIE 194
IL EG TA ++
Sbjct: 131 VGQGMEVILATGTTVEGDATALYLQ 155
>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 60
Score = 24.9 bits (55), Expect = 3.0
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 137 SGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAIL 178
+GA++++K +G+ N +L+ E++ V +L
Sbjct: 19 AGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 60
Score = 24.6 bits (54), Expect = 4.9
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 309 SGAYFAWKATAMGRNYVNGKTFLEKREKLR 338
+GA++++K +G+ N +L+ +
Sbjct: 19 AGAWYSYKGEKIGQGKANATAWLKDNPETA 48
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 60
Score = 25.0 bits (55), Expect = 3.3
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 309 SGAYFAWKATAMGRNYVNGKTFLEKREKLR 338
SGA+F ++ +G+ N + FL + +
Sbjct: 19 SGAWFTYEGEQLGQGKENARNFLVENADVA 48
Score = 24.2 bits (53), Expect = 6.7
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 137 SGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
SGA+F ++ +G+ N + FL + E++ + +
Sbjct: 19 SGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKEKL 59
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 59
Score = 24.5 bits (54), Expect = 5.1
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 137 SGAYFAWKATAMGRNYVNGKTFLEKRYSEDLELDDAVHTAI 177
+G+++++ +G+ ++ +R + E+ D V AI
Sbjct: 18 AGSFYSYGDERIGQGKEKTIAYIAERPEMEQEIRDRVMAAI 58
Score = 23.8 bits (52), Expect = 8.0
Identities = 3/30 (10%), Positives = 16/30 (53%)
Query: 309 SGAYFAWKATAMGRNYVNGKTFLEKREKLR 338
+G+++++ +G+ ++ +R ++
Sbjct: 18 AGSFYSYGDERIGQGKEKTIAYIAERPEME 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,330,012
Number of extensions: 62775
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 91
Length of query: 352
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,226,816
Effective search space: 326333056
Effective search space used: 326333056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)