RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2870
(487 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 70.4 bits (173), Expect = 2e-14
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 26/129 (20%)
Query: 333 SEEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQV 392
+ ++L+ F L+D + DG+I +++L I R+
Sbjct: 17 EQIQELKEAFQLFDRDSDGLIDRNELGKI------------LRSLGFN------------ 52
Query: 393 STQRYAHYVFNTLDHNKTGFLNFEDFVKGLSI-LCRGSEEEKLRWIFCLYDINGDGVISK 451
++ + +F +D ++F +F+ +S+ L RG +EE+LR F L+D + DG IS
Sbjct: 53 PSEAEINKLFEEIDAG-NETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISI 111
Query: 452 DDLYNIVSS 460
+L ++ S
Sbjct: 112 GELRRVLKS 120
Score = 63.9 bits (156), Expect = 4e-12
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 28/147 (19%)
Query: 276 TGTIRQDTFKGIYAKFFPCGTSSYRYAHYVFNTLDHNKTGFLNFEDFVKGLSI-LCRGSE 334
G I ++ I + S + +F +D ++F +F+ +S+ L RG +
Sbjct: 34 DGLIDRNELGKIL-RSLG-FNPSEAEINKLFEEIDAG-NETVDFPEFLTVMSVKLKRGDK 90
Query: 335 EEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQVST 394
EE+LR F L+D + DG IS +L ++ S+ + + VE L
Sbjct: 91 EEELREAFKLFDKDHDGYISIGELRRVLKSL------------GERLSDEEVEKL----- 133
Query: 395 QRYAHYVFNTLDHNKTGFLNFEDFVKG 421
D + G +++E+F K
Sbjct: 134 -------LKEYDEDGDGEIDYEEFKKL 153
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 50.2 bits (121), Expect = 3e-08
Identities = 13/63 (20%), Positives = 27/63 (42%)
Query: 301 YAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYN 360
F D + G ++ ++ L L G EE++ + D +GDG I ++
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Query: 361 IVS 363
+++
Sbjct: 61 LMA 63
Score = 50.2 bits (121), Expect = 3e-08
Identities = 13/63 (20%), Positives = 27/63 (42%)
Query: 397 YAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYN 456
F D + G ++ ++ L L G EE++ + D +GDG I ++
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Query: 457 IVS 459
+++
Sbjct: 61 LMA 63
Score = 41.4 bits (98), Expect = 3e-05
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 24/87 (27%)
Query: 337 KLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQVSTQR 396
+LR F L+D +GDG IS D+L + S+ E G+ + ++ + +
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGE------------GLSEEEIDEMIRE---- 44
Query: 397 YAHYVFNTLDHNKTGFLNFEDFVKGLS 423
+D + G ++FE+F++ ++
Sbjct: 45 --------VDKDGDGKIDFEEFLELMA 63
Score = 35.6 bits (83), Expect = 0.004
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 433 KLRWIFCLYDINGDGVISKDDLYNIVSSVYELM 465
+LR F L+D +GDG IS D+L + S+ E +
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGL 33
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 41.0 bits (97), Expect = 3e-05
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 313 KTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYN 360
+ G + E+ + L++L EE++ +F +D +GDG IS ++
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCV 48
Score = 41.0 bits (97), Expect = 3e-05
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 409 KTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYN 456
+ G + E+ + L++L EE++ +F +D +GDG IS ++
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCV 48
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 40.0 bits (94), Expect = 8e-05
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 308 TLDHNKTGFLNFEDFVKGLSILCRGSEEEK----LRWIFCLYDINGDGVISKDDLYNIV 362
LD + G+++ E+ K L L +E+ + F D +GDG IS ++ +
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 40.0 bits (94), Expect = 8e-05
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 404 TLDHNKTGFLNFEDFVKGLSILCRGSEEEK----LRWIFCLYDINGDGVISKDDLYNIV 458
LD + G+++ E+ K L L +E+ + F D +GDG IS ++ +
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 38.9 bits (91), Expect = 2e-04
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 20/79 (25%)
Query: 344 LYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQVSTQRYAHYVFN 403
L D +GDG I ++L ++ ++ + FN
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEEL--------------------IEADFN 41
Query: 404 TLDHNKTGFLNFEDFVKGL 422
+D + G ++FE+F++ +
Sbjct: 42 EIDKDGDGRISFEEFLEAM 60
Score = 30.0 bits (68), Expect = 0.34
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 276 TGTIRQDTFKGIYAKFF--PCGTSSYRYAHYVFNTLDHNKTGFLNFEDFVKGL 326
G I + + + FN +D + G ++FE+F++ +
Sbjct: 8 DGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 39.0 bits (91), Expect = 0.001
Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 25/123 (20%)
Query: 342 FCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMVAQRVEYLFQVSTQRYAHYV 401
F L+D +GDG I+ +L ++ S L Q T+ +
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRS------------------------LGQNPTEAELQDM 52
Query: 402 FNTLDHNKTGFLNFEDFVKGLSILCRGSE-EEKLRWIFCLYDINGDGVISKDDLYNIVSS 460
N +D + G ++F +F+ ++ + ++ EE+++ F ++D +G+G IS +L +++++
Sbjct: 53 INEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTN 112
Query: 461 VYE 463
+ E
Sbjct: 113 LGE 115
Score = 33.2 bits (76), Expect = 0.12
Identities = 15/62 (24%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 307 NTLDHNKTGFLNFEDFVKGLSILCRGSE-EEKLRWIFCLYDINGDGVISKDDLYNIVSSV 365
N +D + G ++F +F+ ++ + ++ EE+++ F ++D +G+G IS +L ++++++
Sbjct: 54 NEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113
Query: 366 YE 367
E
Sbjct: 114 GE 115
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 38.5 bits (90), Expect = 0.002
Identities = 29/152 (19%), Positives = 65/152 (42%), Gaps = 23/152 (15%)
Query: 306 FNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSSV 365
F+ D + +G ++ ++ + L ++E+++ + D +G G I ++ +I++
Sbjct: 23 FDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82
Query: 366 YELMGTYAYRAFDSGMVAQRVEYLFQVSTQRYAHYVFNTLDHNKTGFLNFEDFVKGLSIL 425
+G R ++ F D +KTG ++ ++ + L
Sbjct: 83 ---LGE---RDPREEILK-----------------AFRLFDDDKTGKISLKNLKRVAKEL 119
Query: 426 CRGSEEEKLRWIFCLYDINGDGVISKDDLYNI 457
+E+L+ + D NGDG IS+++ Y I
Sbjct: 120 GETITDEELQEMIDEADRNGDGEISEEEFYRI 151
Score = 32.4 bits (74), Expect = 0.28
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 305 VFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNI 361
F D +KTG ++ ++ + L +E+L+ + D NGDG IS+++ Y I
Sbjct: 95 AFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRI 151
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 32.7 bits (76), Expect = 0.015
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 337 KLRWIFCLYDINGDGVISKDDLYNIVSSV 365
+L+ F L+D +GDG I ++ +++ ++
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 32.7 bits (76), Expect = 0.015
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 433 KLRWIFCLYDINGDGVISKDDLYNIVSSV 461
+L+ F L+D +GDG I ++ +++ ++
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 26.2 bits (59), Expect = 3.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 305 VFNTLDHNKTGFLNFEDFVKGLSIL 329
F D + G ++FE+F L L
Sbjct: 5 AFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 26.2 bits (59), Expect = 3.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 401 VFNTLDHNKTGFLNFEDFVKGLSIL 425
F D + G ++FE+F L L
Sbjct: 5 AFRLFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 32.4 bits (75), Expect = 0.022
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 337 KLRWIFCLYDINGDGVISKDDLYNIVSSV 365
+L+ F +D +GDG IS ++ ++ +
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 32.4 bits (75), Expect = 0.022
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 433 KLRWIFCLYDINGDGVISKDDLYNIVSSV 461
+L+ F +D +GDG IS ++ ++ +
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 27.4 bits (62), Expect = 1.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 305 VFNTLDHNKTGFLNFEDFVKGLS 327
F D + G ++FE+F + L
Sbjct: 5 AFKEFDKDGDGKISFEEFKELLK 27
Score = 27.4 bits (62), Expect = 1.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 401 VFNTLDHNKTGFLNFEDFVKGLS 423
F D + G ++FE+F + L
Sbjct: 5 AFKEFDKDGDGKISFEEFKELLK 27
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 31.0 bits (71), Expect = 0.075
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 341 IFCLYDINGDGVISKDDLYNIVSSV 365
F L+D +GDG IS ++L + S+
Sbjct: 5 AFKLFDKDGDGYISAEELRKALRSL 29
Score = 31.0 bits (71), Expect = 0.075
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 437 IFCLYDINGDGVISKDDLYNIVSSV 461
F L+D +GDG IS ++L + S+
Sbjct: 5 AFKLFDKDGDGYISAEELRKALRSL 29
Score = 29.5 bits (67), Expect = 0.25
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 303 HYVFNTLDHNKTGFLNFEDFVKGLSIL 329
F D + G+++ E+ K L L
Sbjct: 3 REAFKLFDKDGDGYISAEELRKALRSL 29
Score = 29.5 bits (67), Expect = 0.25
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 399 HYVFNTLDHNKTGFLNFEDFVKGLSIL 425
F D + G+++ E+ K L L
Sbjct: 3 REAFKLFDKDGDGYISAEELRKALRSL 29
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 34.3 bits (79), Expect = 0.12
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 42/100 (42%)
Query: 323 VKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDLYNIVSSVYELMGTYAYRAFDSGMV 382
++G ++E IF LYD++GDG I+++ E +G+ A
Sbjct: 326 LEGGEAFTHAAQE-----IFRLYDLDGDGFITRE----------EWLGSDA--------- 361
Query: 383 AQRVEYLFQVSTQRYAHYVFNTLDHNKTGFLNFEDFVKGL 422
VF+ LD N G + E+ GL
Sbjct: 362 ------------------VFDALDLNHDGKITPEEMRAGL 383
Score = 28.5 bits (64), Expect = 8.9
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 419 VKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDD 453
++G ++E IF LYD++GDG I++++
Sbjct: 326 LEGGEAFTHAAQE-----IFRLYDLDGDGFITREE 355
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 33.7 bits (77), Expect = 0.22
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 395 QRYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 454
+ +A + +D+++ G L+F +F + K +F D+NGDGV++ D+L
Sbjct: 178 RSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDEL 237
Score = 32.9 bits (75), Expect = 0.39
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 300 RYAHYVFNTLDHNKTGFLNFEDFVKGLSILCRGSEEEKLRWIFCLYDINGDGVISKDDL 358
+A + +D+++ G L+F +F + K +F D+NGDGV++ D+L
Sbjct: 179 SFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDEL 237
>gnl|CDD|202837 pfam03980, Nnf1, Nnf1. NNF1 is an essential yeast gene that is
necessary for chromosome segregation. It is associated
with the spindle poles and forms part of a kinetochore
subcomplex called MIND.
Length = 108
Score = 29.5 bits (67), Expect = 1.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 116 IRSVWQKMSGSVSNSSEQEEYPEFID-REFRVKLWNMDELTEQEEYPEFIDHSELTEENI 174
+ S+ ++M + S QEE+ E I+ R KL +DEL E+ + E E+
Sbjct: 4 LESIQRQMVEFLQESC-QEEFDEIIEERNLEEKLNELDELIEEAK--------ERKEDGG 54
Query: 175 DSPRYRPQSI-EALCRAT-----KFSEAEIKKIYRNFKAE 208
D P +R E L R+ E+ + +AE
Sbjct: 55 DDPAWRDSLTPEELIRSHLVPYLLKQLDELNARLQKIQAE 94
>gnl|CDD|206584 pfam14417, MEDS, MEDS: MEthanogen/methylotroph, DcmR Sensory
domain. MEDS is prototyped by DcmR and is likely to
function with the PocR domain in certain organisms in
sensing hydrocarbon derivatives. The MEDS domain occurs
fused to Histidine Kinase and as standalone version.
Sequence analysis shows that it is a catalytically
inactive version of the P-loop NTPase domain of the RecA
superfamily.
Length = 191
Score = 30.0 bits (68), Expect = 2.0
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 156 EQEEYPEFIDHSELTEENIDSPRYRPQSIEALC--RATKFSEAEIKKIYRN 204
+ E+P F + L + I YR I ALC + S AEI N
Sbjct: 132 GKSEWPAFAQYEALIDAAI--GNYR---ITALCTYDLDRLSAAEIIDAVAN 177
>gnl|CDD|224723 COG1810, COG1810, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 224
Score = 30.0 bits (68), Expect = 2.3
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 264 PCGSTYLKAECPTGTIRQDTFK---GIYAKFFPCGTSSYRYAHYVFNTLDHNKTGFLNFE 320
PCGST+ A+ G +D G+ + +PC S R +T H K G+++ E
Sbjct: 157 PCGSTWYVAKRLVGVSVKDELPVKAGLAHQHYPCRASMERDFELG-DTKLH-KAGYIHKE 214
Query: 321 DFVKGL 326
+ L
Sbjct: 215 AVERAL 220
>gnl|CDD|227387 COG5054, ERV1, Mitochondrial sulfhydryl oxidase involved in the
biogenesis of cytosolic Fe/S proteins [Posttranslational
modification, protein turnover, chaperones].
Length = 181
Score = 29.5 bits (66), Expect = 3.2
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 168 ELTEENIDS---PRYRPQSIEALCRAT-KFSEAEIKKIYRNFKAECPTGTIRQD--TFKG 221
E E + ++ +E L R++ + + N+ A PT R D +F
Sbjct: 60 EGKERKPITMMSTKHDNPDVEELGRSSWTL----LHTVAANYPAR-PTPQQRDDLRSFLF 114
Query: 222 IYAKFFPCGS 231
+++ +PCG
Sbjct: 115 LFSITYPCGE 124
Score = 28.3 bits (63), Expect = 7.5
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 275 PTGTIRQD--TFKGIYAKFFPCGTSSY 299
PT R D +F +++ +PCG S
Sbjct: 101 PTPQQRDDLRSFLFLFSITYPCGECSK 127
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 26.1 bits (59), Expect = 3.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 344 LYDINGDGVISKDDL 358
+D NGDG ISK++L
Sbjct: 7 QFDTNGDGKISKEEL 21
Score = 26.1 bits (59), Expect = 3.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 440 LYDINGDGVISKDDL 454
+D NGDG ISK++L
Sbjct: 7 QFDTNGDGKISKEEL 21
>gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase.
Length = 1102
Score = 29.7 bits (67), Expect = 4.2
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 139 FIDREFRVKLWNMDELTEQEEYPEFIDHSELTEENIDSPRYRPQSIEALCRATKFSEAEI 198
FID F L + EL + E++ + SEL++++ + R S + + ATK +E E+
Sbjct: 473 FIDPWF---LTQLKELVDVEQFLKSRSLSELSKDDFYEVKRRGFSDKQIAFATKSTEKEV 529
Query: 199 KK 200
+
Sbjct: 530 RS 531
>gnl|CDD|240157 cd05031, S-100A10_like, S-100A10_like: S-100A10 domain found in
proteins similar to S100A10. S100A10 is a member of the
S100 family of EF-hand superfamily of calcium-binding
proteins. Note that the S-100 hierarchy, to which this
S-100A1_like group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100 proteins are expressed exclusively in vertebrates,
and are implicated in intracellular and extracellular
regulatory activities. A unique feature of S100A10 is
that it contains mutation in both of the calcium binding
sites, making it calcium insensitive. S100A10 has been
detected in brain, heart, gastrointestinal tract,
kidney, liver, lung, spleen, testes, epidermis, aorta,
and thymus. Structural data supports the homo- and
hetero-dimeric as well as hetero-tetrameric nature of
the protein. S100A10 has multiple binding partners in
its calcium free state and is therefore involved in many
diverse biological functions.
Length = 94
Score = 27.4 bits (61), Expect = 6.1
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 309 LDHNKTGFLNFEDF---VKGLSILC 330
LD N+ G +NFE+F V GLSI C
Sbjct: 60 LDQNRDGKVNFEEFVSLVAGLSIAC 84
Score = 27.4 bits (61), Expect = 6.1
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 405 LDHNKTGFLNFEDF---VKGLSILC 426
LD N+ G +NFE+F V GLSI C
Sbjct: 60 LDQNRDGKVNFEEFVSLVAGLSIAC 84
>gnl|CDD|219890 pfam08537, NBP1, Fungal Nap binding protein NBP1. NBP1 is a
nuclear protein which has been shown in Saccharomyces
cerevisiae to be essential for the G2/M transition of
the cell cycle.
Length = 313
Score = 28.7 bits (64), Expect = 6.9
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 117 RSVWQKMSGSVSNSSEQEEYPEFIDREFRVKLWNMDELTEQEEYPEFIDHSELTEENIDS 176
R+ W + SN + + + + +L N EQE+ + I SE ++ +
Sbjct: 78 RTFWNNIKSVFSN--DNRDLSKMQNASINYRLPNSPADEEQEDAKDRILRSEAFKKKVLE 135
Query: 177 PRYRPQSIEALCR 189
+Y + +E L R
Sbjct: 136 LKYNKRMLEELRR 148
>gnl|CDD|147649 pfam05595, DUF771, Domain of unknown function (DUF771). Family of
uncharacterized ORFs found in Bacteriophage and
Lactococcus lactis.
Length = 91
Score = 26.9 bits (60), Expect = 8.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 133 QEEYPEFIDREFRVKLWNMDELTE 156
+EEY E ++ W + EL +
Sbjct: 8 KEEYEELKRKDLDGVWWTIKELKK 31
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.404
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,376,330
Number of extensions: 2326933
Number of successful extensions: 1860
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1837
Number of HSP's successfully gapped: 61
Length of query: 487
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 386
Effective length of database: 6,457,848
Effective search space: 2492729328
Effective search space used: 2492729328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.0 bits)