BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2871
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 243 bits (619), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 117/168 (69%), Positives = 140/168 (83%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE +RK+FIGGLDYRTTDESL+ FEQWGEIVDVVVMKDP TKRSRGFGFITYS A MV
Sbjct: 12 EPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMV 71
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQF 130
DDA + RPH +DGRVVE KRAVPR EIG+PEA ATVKK+FVGG+K++ EE+DLR+YF Q+
Sbjct: 72 DDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQY 131
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
GT+ S +V +KET KRGFAF+EF+DYD VDKI LS+ + + ++
Sbjct: 132 GTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHID 179
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 54/93 (58%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR + + +++K+F+GG+ + L+ +F+Q+G +V ++ D T++ RGF F
Sbjct: 94 PRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAF 153
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
+ + + VD +R H I G+ ++ K+A+P+
Sbjct: 154 VEFDDYDPVDKICLSRNHQIRGKHIDVKKALPK 186
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 238 bits (607), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 142/176 (80%), Gaps = 2/176 (1%)
Query: 5 YDDSK-CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
YDD + TEPE LRK+FIGGLDYRTTD+ L+A FE+WG IVDVVVMKDP TKRSRGFGFI
Sbjct: 11 YDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFI 70
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDD 122
TYS++ M+D+A + RPH IDGR VE KRAVPR EI P A ATVKK+FVGGL+ D +E+
Sbjct: 71 TYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEEC 130
Query: 123 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
LREYF FG I SVN+V++K+TG KRGFAFIEF+DYD VDKI+L K + ++ ++
Sbjct: 131 LREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLD 186
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 55/96 (57%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR + +++K+F+GGL +E L+ +F+ +G+IV V ++ D T + RGF F
Sbjct: 101 PRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAF 160
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
I + + VD + + H+I + ++ K+A+ + ++
Sbjct: 161 IEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDM 196
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 234 bits (596), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/170 (65%), Positives = 134/170 (78%), Gaps = 1/170 (0%)
Query: 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAK 69
TEPE +RK+FIGGLDYRTTDE+L+A FE+WG IVDVVVMKDP TKRSRGFGFITYS +
Sbjct: 24 ITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSS 83
Query: 70 MVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFS 128
M+D+A +RPH IDGRVVE KRAVPR +I P A ATVKK+FVG LK D +E +R+YF
Sbjct: 84 MIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQ 143
Query: 129 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
FG I +N+V +KETG KRGFAF+EF+DYD VDK+VL K L + V+
Sbjct: 144 HFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVD 193
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 56/93 (60%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR D +++K+F+G L ++S++ +F+ +G IVD+ ++ D T + RGF F
Sbjct: 108 PRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAF 167
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95
+ + + VD + + H ++G++V+ K+A+P+
Sbjct: 168 VEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPK 200
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 94 PRDEIGKPEANATVKKMFVGGLKDQEED-DLREYFSQFGTIESVNMVTNKETGAKRGFAF 152
P+D I +PE ++K+F+GGL + D +L+ +F ++G I V ++ + T RGF F
Sbjct: 20 PQDSITEPEH---MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGF 76
Query: 153 IEFNDYDVVDKIVLSKITLLLDRRVE 178
I ++ ++D+ S+ + R VE
Sbjct: 77 ITYSHSSMIDEAQKSRPHKIDGRVVE 102
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 210 bits (534), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 100/168 (59%), Positives = 125/168 (74%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E RK+FIGGL + TT+ESL+ F+EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AMS RPH IDGRVVE KRAV R+E KP A+ TVKK+FVGG+K D EE LREYF ++
Sbjct: 64 DAAMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEY 123
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IES ++T+K++G KRGF F+ FND+D VDKIVL K + E
Sbjct: 124 GKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAE 171
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 57/95 (60%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R + +K +++K+F+GG+ T + L+ +FE++G+I ++ D + + RGFGF+
Sbjct: 87 REESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFV 146
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+++ VD + + H I+G E ++A+ + E+
Sbjct: 147 TFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQEM 181
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 206 bits (523), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 130/168 (77%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E RK+FIGGL ++TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ RPH+IDGRVVE KRAV R+E GKP A+ TVKK+FVGG+K D EE LR+YF+++
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEY 123
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G I+++ ++T++++G KRGF F+ F+D+D VDKIVL K + E
Sbjct: 124 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 171
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 52/84 (61%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +F ++G+I + ++ D + + RGFGF+T+ + VD
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 75 MSNRPHNIDGRVVETKRAVPRDEI 98
+ + H I+G E ++A+ R E+
Sbjct: 158 VLQKYHTINGHNAEVRKALSRQEM 181
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 206 bits (523), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 126/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E RK+FIGGL + TT+ESL+ ++EQWG + D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ RPH IDGRVVE KRAV R+E KP A+ TVKK+FVGG+K D EE LREYF ++
Sbjct: 64 DAAMATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEY 123
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G I+S+ ++T+K++G KRGFAF+ F+D+D VDKIVL K + E
Sbjct: 124 GKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAE 171
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 56/95 (58%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R + +K +++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGF F+
Sbjct: 87 REESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFV 146
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+ + VD + + H I+G E ++A+ + E+
Sbjct: 147 TFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEM 181
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 129/171 (75%), Gaps = 1/171 (0%)
Query: 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEA 68
K E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S
Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 72
Query: 69 KMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 127
VD AM+ RPH+IDGRVVE KRAV R+E GKP A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 73 AEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 128 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
++G I+++ ++T++++G KRGF F+ F+D+D VDKIVL K + E
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 183
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 53/84 (63%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 75 MSNRPHNIDGRVVETKRAVPRDEI 98
+ + H I+G E ++A+ R E+
Sbjct: 170 VLQKYHTINGHNAEVRKALSRQEM 193
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 129/171 (75%), Gaps = 1/171 (0%)
Query: 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEA 68
K E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S
Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 72
Query: 69 KMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 127
VD AM+ RPH+IDGRVVE KRAV R+E GKP A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 73 AEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 128 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
++G I+++ ++T++++G KRGF F+ F+D+D VDKIVL K + E
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 183
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 53/84 (63%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 75 MSNRPHNIDGRVVETKRAVPRDEI 98
+ + H I+G E ++A+ R E+
Sbjct: 170 VLQKYHTINGHNAEVRKALSRQEM 193
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/159 (61%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
EPE LRK+FIGGL + TTDESL+ FEQWG + D VVM+DP +KRSRGFGF+TY
Sbjct: 8 NEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDE 67
Query: 71 VDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 129
VD AM+ RPH +DGRVVE KRAV R++ +P A+ TVKK+FVGG+K D EED LREYF Q
Sbjct: 68 VDAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQ 127
Query: 130 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSK 168
+G IE + ++T++ +G KRGFAF+ F D+D VDKIV+ K
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQK 166
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 56/95 (58%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D S+ +++K+F+GG+ T ++ L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+ + VD + + H ++ + ++A+ + E+
Sbjct: 152 TFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQEM 186
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 101 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P ++K+F+GGL + D+ LRE+F Q+GT+ ++ + + RGF F+ + D
Sbjct: 7 PNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTD 66
Query: 160 VVDKIVLSKITLLLDRRVE 178
VD + ++ + R VE
Sbjct: 67 EVDAAMTARPHKVDGRVVE 85
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/161 (58%), Positives = 127/161 (78%), Gaps = 1/161 (0%)
Query: 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEA 68
K E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S
Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 72
Query: 69 KMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 127
VD AM+ RPH+IDGRVVE KRAV R+E GKP A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 73 AEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 132
Query: 128 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSK 168
++G I+++ ++T++++G KRGF F+ F+D+D VDKIVL K
Sbjct: 133 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 53/84 (63%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 75 MSNRPHNIDGRVVETKRAVPRDEI 98
+ + H I+G E ++A+ R E+
Sbjct: 170 VLQKHHTINGHNAEVRKALSRQEM 193
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 108 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVL 166
+K+F+GGL + E+ LR Y+ Q+G + ++ + + RGF F+ F+ VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 167 SKITLLLDRRVE 178
++ + R VE
Sbjct: 81 ARPHSIDGRVVE 92
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 128/168 (76%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ RPH+IDGRVVE KRAV R+E GKP A+ TVKK+FVGG+K D EE LR+YF ++
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 123
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G I+++ ++T++++G KRGF F+ F+D+D VDKIVL K + E
Sbjct: 124 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE 171
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 53/84 (63%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 75 MSNRPHNIDGRVVETKRAVPRDEI 98
+ + H I+G E ++A+ R E+
Sbjct: 158 VLQKYHTINGHNAEVRKALSRQEM 181
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ RPH +DGRVVE KRAV R++ +P A+ TVKK+FVGG+K D EE LR+YF Q+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE + ++T++ +G KRGFAF+ F+D+D VDKIV+ K + E
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 55/95 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+ + VD + + H ++G E ++A+ + E+
Sbjct: 152 TFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEM 186
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 101 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 160 VVDKIVLSKITLLLDRRVE 178
VD + ++ + R VE
Sbjct: 67 EVDAAMNARPHKVDGRVVE 85
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ RPH +DGRVVE KRAV R++ +P A+ TVKK+FVGG+K D EE LR+YF Q+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE + ++T++ +G KRGFAF+ F+D+D VDKIV+ K + E
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 55/95 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+ + VD + + H ++G E ++A+ + E+
Sbjct: 152 TFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 101 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 160 VVDKIVLSKITLLLDRRVE 178
VD + ++ + R VE
Sbjct: 67 EVDAAMNARPHKVDGRVVE 85
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ RPH +DGRVVE KRAV R++ +P A+ TVKK+FVGG+K D EE LR+YF Q+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE + ++T++ +G KRGFAF+ F+D+D VDKIV+ K + E
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 55/95 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+ + VD + + H ++G E ++A+ + E+
Sbjct: 152 TFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 101 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 160 VVDKIVLSKITLLLDRRVE 178
VD + ++ + R VE
Sbjct: 67 EVDAAMNARPHKVDGRVVE 85
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ RPH +DGRVVE KRAV R++ +P A+ TVKK+FVGG+K D EE LR+YF Q+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE + ++T++ +G KRGFAF+ F+D+D VDKIV+ K + E
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 55/95 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+ + VD + + H ++G E ++A+ + E+
Sbjct: 152 TFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 101 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 160 VVDKIVLSKITLLLDRRVE 178
VD + ++ + R VE
Sbjct: 67 EVDAAMNARPHKVDGRVVE 85
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ RPH +DGRVVE KRAV R++ +P A+ TVKK+FVGG+K D EE LR+YF Q+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE + ++T++ +G KRGFAF+ F+D+D VDKIV+ K + E
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 176
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 55/95 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+ + VD + + H ++G E ++A+ + E+
Sbjct: 152 TFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 101 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 160 VVDKIVLSKITLLLDRRVE 178
VD + ++ + R VE
Sbjct: 67 EVDAAMNARPHKVDGRVVE 85
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 129/173 (74%), Gaps = 1/173 (0%)
Query: 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS 66
+ K E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S
Sbjct: 11 ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70
Query: 67 EAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLRE 125
VD AM+ RPH+IDGRVVE KRAV R+E GKP A+ TVKK+FVGG+K D EE LR+
Sbjct: 71 SMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 126 YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
YF ++G I+++ ++T++++G KRGF F+ F+D+D VDKI L K + E
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAE 183
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 52/84 (61%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FE++G+I + ++ D + + RGFGF+T+ + VD
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 75 MSNRPHNIDGRVVETKRAVPRDEI 98
+ H I+G E ++A+ R E+
Sbjct: 170 FLQKYHTINGHNAEVRKALSRQEM 193
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 202 bits (515), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ RPH +DGRVVE KRAV R++ +P A+ TVKK+FVGG+K D EE LR+YF Q+
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE + ++T++ +G KRGFAF+ F+D++ VDKIV+ K + E
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCE 176
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 55/95 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+ + VD + + H ++G E ++A+ + E+
Sbjct: 152 TFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 101 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 160 VVDKIVLSKITLLLDRRVE 178
VD + ++ + R VE
Sbjct: 67 KVDAAMNARPHKVDGRVVE 85
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/168 (57%), Positives = 126/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ PH +DGRVVE KRAV R++ +P A+ TVKK+FVGG+K D EE LR+YF Q+
Sbjct: 69 DAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE + ++T++ +G KRGFAF+ F+D+D VDKIV+ K + E
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCE 176
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 55/95 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+
Sbjct: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+ + VD + + H + G E ++A+P+ E+
Sbjct: 152 TFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEM 186
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 101 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 160 VVDKIVLSKITLLLDRRV 177
VD ++ +D RV
Sbjct: 67 EVD-AAMNTTPHKVDGRV 83
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/166 (60%), Positives = 127/166 (76%), Gaps = 2/166 (1%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R +D C E E LRK+FIGGL TT+E+L+ F+ QWG++VDVVVM+D TKRSRGFGFI
Sbjct: 20 REEDDIC-ELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFI 78
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDD 122
TY+++ MVD A NRPH IDG+ VE KRA+PR E E N +VKK+FVGGLKD +E+
Sbjct: 79 TYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEEC 138
Query: 123 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSK 168
LREYF QFG + SV ++T+K TG +RGFAF+EF+DYD VDK +L K
Sbjct: 139 LREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKK 184
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
S++K+F+GGL +E L+ +F Q+G +V V ++ D T + RGF F+ + + VD A
Sbjct: 121 SVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKA 180
Query: 75 MSNRPHNIDGRVVETKRAV 93
+ + H I V+ K+++
Sbjct: 181 ILKKQHAIKYVHVDVKKSI 199
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
++K+F+GGL E++L+ ++ Q+G + V ++ + T RGF FI + +VD+
Sbjct: 31 LRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQ 90
Query: 166 LSKITLLLDRRVE 178
++ ++ + VE
Sbjct: 91 ENRPHIIDGKTVE 103
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 200 bits (509), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/162 (58%), Positives = 126/162 (77%), Gaps = 1/162 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTD+SL+ FEQWG++ D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 22 EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 81
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D +MS RPH +DGRVVE KRAV R++ +P A+ TVKK+FVGG+K D EE LR+YF +
Sbjct: 82 DASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGY 141
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLL 172
G IE++ ++ ++++G KRGFAF+ F+D+D VDKIV+ K +
Sbjct: 142 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 183
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 55/95 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D ++ +++K+F+GG+ T + L+ +FE +G+I + VM+D + + RGF F+
Sbjct: 105 REDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFV 164
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+ + VD + + H I+ E K+A+ + E+
Sbjct: 165 TFDDHDTVDKIVVQKYHTINLHNCEVKKALSKQEM 199
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 96 DEIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIE 154
D+ +P+ ++K+F+GGL + DD LRE+F Q+G + ++ + +T RGF F+
Sbjct: 15 DQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVT 74
Query: 155 FNDYDVVDKIVLSKITLLLDRRVE 178
++ + VD + ++ + R VE
Sbjct: 75 YSCVEEVDASMSARPHKVDGRVVE 98
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 199 bits (506), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTD+SL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM RPH +DGRVVE KRAV R++ KP A+ TVKK+FVGG+K D EE +LR+YF ++
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE++ ++ ++++G KRGFAF+ F+D+D VDKIV+ K + E
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 197
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 54/84 (64%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + +L+ +FE++G+I + VM+D + + RGF F+T+ + VD
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 75 MSNRPHNIDGRVVETKRAVPRDEI 98
+ + H I+G E K+A+ + E+
Sbjct: 184 VVQKYHTINGHNCEVKKALSKQEM 207
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 101 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 160 VVDKIVLSKITLLLDRRVE 178
VD + ++ + R VE
Sbjct: 88 EVDAAMCARPHKVDGRVVE 106
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 199 bits (506), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTD+SL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM RPH +DGRVVE KRAV R++ KP A+ TVKK+FVGG+K D EE +LR+YF ++
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE++ ++ ++++G KRGFAF+ F+D+D VDKIV+ K + E
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 197
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 54/84 (64%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + +L+ +FE++G+I + VM+D + + RGF F+T+ + VD
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 75 MSNRPHNIDGRVVETKRAVPRDEI 98
+ + H I+G E K+A+ + E+
Sbjct: 184 VVQKYHTINGHNCEVKKALSKQEM 207
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 101 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 160 VVDKIVLSKITLLLDRRVE 178
VD + ++ + R VE
Sbjct: 88 EVDAAMCARPHKVDGRVVE 106
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 199 bits (506), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTD+SL+ FE+WG + D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM RPH +DGRVVE KRAV R++ KP A+ TVKK+FVGG+K D EE +LR+YF ++
Sbjct: 90 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKY 149
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE++ ++ ++++G KRGFAF+ F+D+D VDKIV+ K + E
Sbjct: 150 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 197
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 54/84 (64%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + +L+ +FE++G+I + VM+D + + RGF F+T+ + VD
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 75 MSNRPHNIDGRVVETKRAVPRDEI 98
+ + H I+G E K+A+ + E+
Sbjct: 184 VVQKYHTINGHNCEVKKALSKQEM 207
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 101 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 160 VVDKIVLSKITLLLDRRVE 178
VD + ++ + R VE
Sbjct: 88 EVDAAMCARPHKVDGRVVE 106
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 126/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTD+SL+ FEQWG++ D VVM+DP TKRSRGFGF+TYS + V
Sbjct: 22 EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 81
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D +MS RPH +DGRVVE KRAV R++ +P A+ TVKK+FVGG+K D EE LR+Y +
Sbjct: 82 DASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESY 141
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE++ ++ ++++G KRGFAF+ F+D+D VDKIV+ K + E
Sbjct: 142 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE 189
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 55/95 (57%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D ++ +++K+F+GG+ T + L+ + E +G+I + VM+D + + RGF F+
Sbjct: 105 REDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFV 164
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
T+ + VD + + H I+G E K+A+ + E+
Sbjct: 165 TFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 199
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 96 DEIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIE 154
D+ P+ ++K+F+GGL + DD LRE+F Q+G + ++ + +T RGF F+
Sbjct: 15 DQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVT 74
Query: 155 FNDYDVVDKIVLSKITLLLDRRVE 178
++ + VD + ++ + R VE
Sbjct: 75 YSCVEEVDASMSARPHKVDGRVVE 98
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 119/168 (70%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE+LRK+F+GGL TTD+ ++ F+ Q+GEI D++VM+DP TKRSRGFGF+T+S V
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM RPH IDG+ V+ KRAVPRD+ + E+N + K+++V G++ D ED L EYF+++
Sbjct: 78 DAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKY 137
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
GT+ ++ +K T RGF F+ F+D+D VD+ VL K ++ R +
Sbjct: 138 GTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 185
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 57/102 (55%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR D ++ S +++++ G+ T++ L +F ++G + ++ D T++ RGFGF
Sbjct: 100 PRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGF 159
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEAN 104
+T+ + VD + + H ++G + ++ + +DE+ K + N
Sbjct: 160 VTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMN 201
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E L K+FIGGL+ +T++ L+ FE +G + D VV+ +P TKRSR FGF+TYS +
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ PH +DG VE KRAV R++ +P A+A VKK+FVGGLK D E DL E+FSQF
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
GT+E ++ +K++G KRGF F+ F ++D DK + K + RVE
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 169
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D ++ ++K+F+GGL + L F Q+G + ++ D + + RGFGF+
Sbjct: 85 REDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 144
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
+ D A + H I G VE K+AVP+++I
Sbjct: 145 YFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDI 179
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 166 bits (421), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 110/168 (65%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E L K+FIGGL+ +T++ L+ FE +G + D VV+ +P TKRSR FGF+TYS +
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D AM+ PH +DG VE KRAV R++ +P A+A VKK+FVGGLK D E DL E+FSQF
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G +E ++ +K++G KRGF F+ F +D DK + K + RVE
Sbjct: 122 GAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVE 169
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63
R D ++ ++K+F+GGL + L F Q+G + ++ D + + RGFGF+
Sbjct: 85 REDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFV 144
Query: 64 TYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
+ D A + H I G VE K+AVP+++I
Sbjct: 145 YFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDI 179
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 106/162 (65%), Gaps = 8/162 (4%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL++ TTD+SL+ +FEQ+GE++D VM+D T RSRGFGF+T+ K V++ MS
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS- 222
Query: 78 RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 136
+ H++DG++++ KRA+PR+E K KMFVGG+ D E++ R +F+QFG +
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEK------TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDA 276
Query: 137 NMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
++ +K+TG RGF F+ + + V+ + + + VE
Sbjct: 277 TLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVE 318
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E K+F+GG+ T+E + FF Q+G ++D +M D T R RGFGF+TY V
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV 301
Query: 72 DDAMSNRPHNIDGRVVETKRAVPR 95
+ MS I G+ VE KRA P+
Sbjct: 302 EATMSQPYITIHGKPVEVKRATPK 325
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 107/162 (66%), Gaps = 8/162 (4%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL++ TT+++L+ +F ++G + D+ +MKDP T RSRGFGF+++ + VD+ +
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 78 RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESV 136
+ H +DG+V++ KRA+PRDE K K+FVGG+ D + E+FSQ+GTI
Sbjct: 220 Q-HILDGKVIDPKRAIPRDEQDK------TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDA 272
Query: 137 NMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
++ +K+TG RGF F+ ++ D VD++ +K DR++E
Sbjct: 273 QLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIE 314
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+F+GG+ + + FF QWG I+D +M D T +SRGFGF+TY A VD N
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 78 RPHNIDGRVVETKRAVPR 95
+ + R +E KRA PR
Sbjct: 304 KFIDFKDRKIEIKRAEPR 321
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 98/154 (63%), Gaps = 3/154 (1%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
P K+FIGGL ++T+ ESL+ +F ++G+I + +VMKDP T+RSRGFGF+T+S+ VD
Sbjct: 25 PNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVD 84
Query: 73 DAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKDQEE-DDLREYFSQFG 131
++ H +DG+ V+ K A PR P+ KK+FVGGL +D++ YF QFG
Sbjct: 85 KVLTQGTHELDGKKVDPKVAFPRR--AHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFG 142
Query: 132 TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
IE ++ +K+T RGF F+ F DVVDK+
Sbjct: 143 PIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVC 176
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL TT E ++++FEQ+G I D ++M D T R RGFGF+T+ +VD
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 77 NRPHNIDGRVVETKRAVPRD 96
H I+ ++VE K+A P++
Sbjct: 178 IHFHEINNKMVECKKAQPKE 197
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 13/176 (7%)
Query: 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75
+ K+F+GGLD+ TT E+L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V +
Sbjct: 9 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL 68
Query: 76 SNRPHNIDGRVVETKRAVPRD------------EIGKPEANATVKKMFVGGLKDQ-EEDD 122
++RPH +DGR ++ K PR + G N+ K+FVGG+ E +
Sbjct: 69 ASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETE 128
Query: 123 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
LREYF +FG + V M+ + E RGF FI F D VD+ V ++ ++VE
Sbjct: 129 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 184
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 10/106 (9%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR D+SK K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGF
Sbjct: 105 PRSDNSKSN------KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDE----IGKPEAN 104
IT+ + + VD A++ H+I G+ VE KRA PRD G+P A+
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGAS 204
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 14/177 (7%)
Query: 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75
+ K+F+GGLD+ TT E+L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V +
Sbjct: 9 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL 68
Query: 76 SNRPHNIDGRVVETKRAVPRD---EIGKPE----------ANATVKKMFVGGL-KDQEED 121
++RPH +DGR ++ K PR E +P N+ K+FVGG+ + E
Sbjct: 69 ASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGET 128
Query: 122 DLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
+L+EYF++FG + V M+ + E RGF FI F D VD+ V ++ ++VE
Sbjct: 129 ELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 185
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 10/107 (9%)
Query: 2 KPRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFG 61
+PR ++S+ K+F+GG+ + + L+ +F ++G + +VV++ D +R RGFG
Sbjct: 105 EPRTENSRSN------KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFG 158
Query: 62 FITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDE----IGKPEAN 104
FIT+ + + VD A++ H+I G+ VE KRA PRD G P +N
Sbjct: 159 FITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSN 205
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 103/176 (58%), Gaps = 13/176 (7%)
Query: 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75
+ K+F+GGLD+ TT E+L+++F Q+GE+VD V+MKD T +SRGFGF+ + + V +
Sbjct: 9 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL 68
Query: 76 SNRPHNIDGRVVETKRAVPRD------------EIGKPEANATVKKMFVGGL-KDQEEDD 122
++RPH +DGR ++ K PR + G ++ K+FVGG+ + E +
Sbjct: 69 ASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETE 128
Query: 123 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
LREYF +FG + V M+ + E RGF FI F D VD+ V ++ ++VE
Sbjct: 129 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 184
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 10/106 (9%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR D SK K+F+GG+ + + L+ +F+++G + +VV++ D +R RGFGF
Sbjct: 105 PRSDSSKSN------KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDE----IGKPEAN 104
IT+ + + VD A++ H+I G+ VE KRA PRD G+P A+
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGAS 204
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 98/155 (63%), Gaps = 3/155 (1%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
P K+FIGGL ++TT E L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + V
Sbjct: 15 SPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGV 74
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D ++ H +D + ++ K A PR +P+ KK+FVGGL + +D+++YF QF
Sbjct: 75 DKVLAQSRHELDSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQF 132
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
G ++ ++ +K T RGF F+ F D+V+K+
Sbjct: 133 GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL TT E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 77 NRPHNIDGRVVETKRAVPRDEIGKPEANA 105
H I+ ++VE K+A P+ E+ P +A
Sbjct: 169 IHFHEINNKMVECKKAQPK-EVMSPTGSA 196
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 93 VPRDEIGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFA 151
P+ + P++ KMF+GGL Q ++ LREYF QFG ++ ++ + T RGF
Sbjct: 5 APQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFG 64
Query: 152 FIEFNDYDVVDKIV 165
F+ F D VDK++
Sbjct: 65 FVTFMDQAGVDKVL 78
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 8/167 (4%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR+ ++ + E K+FIGGL + TT + L+ +F ++GE+VD + DPIT RSRGFGF
Sbjct: 84 PRHSEAATAQREEW-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 142
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEED 121
+ + E++ VD M + H ++G+V++ KRA + VKK+FVGGL D E+
Sbjct: 143 VLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM------KTKEPVKKIFVGGLSPDTPEE 196
Query: 122 DLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSK 168
+REYF FG +ES+ + + +T +RGF FI F + + V KI+ K
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 243
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E ++K+F+GGL T +E ++ +F +GE+ + + D T + RGF FIT+ E + V
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
M + HN+ E K A+ ++
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKE 261
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 8/167 (4%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR+ ++ + E K+FIGGL + TT + L+ +F ++GE+VD + DPIT RSRGFGF
Sbjct: 84 PRHTEAAAAQREEW-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 142
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEED 121
+ + E++ VD M + H ++G+V++ KRA + VKK+FVGGL D E+
Sbjct: 143 VLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM------KTKEPVKKIFVGGLSPDTPEE 196
Query: 122 DLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSK 168
+REYF FG +ES+ + + +T +RGF FI F + + V KI+ K
Sbjct: 197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 243
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E ++K+F+GGL T +E ++ +F +GE+ + + D T + RGF FIT+ E + V
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
M + HN+ E K A+ ++
Sbjct: 239 IMEKKYHNVGLSKCEIKVAMSKE 261
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 97/155 (62%), Gaps = 3/155 (1%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
P K+FIGGL ++TT E L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + V
Sbjct: 15 SPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGV 74
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D ++ H +D + ++ K A PR +P+ KK+FVGGL + +D++ YF QF
Sbjct: 75 DKVLAQSRHELDSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQF 132
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
G ++ ++ +K T RGF F+ F D+V+K+
Sbjct: 133 GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL TT E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 77 NRPHNIDGRVVETKRAVPRDEIGKPEANA 105
H I+ ++VE K+A P+ E+ P +A
Sbjct: 169 IHFHEINNKMVECKKAQPK-EVMSPTGSA 196
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 93 VPRDEIGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFA 151
P+ + P++ KMF+GGL Q ++ LREYF QFG ++ ++ + T RGF
Sbjct: 5 APQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFG 64
Query: 152 FIEFNDYDVVDKIV 165
F+ F D VDK++
Sbjct: 65 FVTFMDQAGVDKVL 78
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 97/155 (62%), Gaps = 3/155 (1%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
P K+FIGGL ++TT E L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + V
Sbjct: 15 SPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGV 74
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQF 130
D ++ H +D + ++ K A PR +P+ KK+FVGGL + +D++ YF QF
Sbjct: 75 DKVLAQSRHELDSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQF 132
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
G ++ ++ +K T RGF F+ F D+V+K+
Sbjct: 133 GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL TT E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 77 NRPHNIDGRVVETKRAVPRDEIGKPEANA 105
H I+ ++VE K+A P+ E+ P +A
Sbjct: 169 IHFHEINNKMVECKKAQPK-EVMSPTGSA 196
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 93 VPRDEIGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFA 151
P+ + P++ KMF+GGL Q ++ LREYF QFG ++ ++ + T RGF
Sbjct: 5 APQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFG 64
Query: 152 FIEFNDYDVVDKIV 165
F+ F D VDK++
Sbjct: 65 FVTFMDQAGVDKVL 78
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 126 bits (317), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 103/162 (63%), Gaps = 3/162 (1%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL ++T+ +SL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 78 RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 136
H +D + ++ K A PR +P+ KK+FVGGL + +D+++YF QFG +E
Sbjct: 82 PHHELDSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
Query: 137 NMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
++ +K T RGF F+ F + DVV+K+ + ++ VE
Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVE 181
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 55/94 (58%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL T E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 77 NRPHNIDGRVVETKRAVPRDEIGKPEANATVKKM 110
H I+ ++VE K+A P++ + P + +
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMFPPGTRGRARGL 203
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 126 bits (317), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 103/162 (63%), Gaps = 3/162 (1%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL ++T+ +SL+ +F ++GEI + +VM+DP TKRSRGFGF+T+++ VD +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 78 RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 136
H +D + ++ K A PR +P+ KK+FVGGL + +D+++YF QFG +E
Sbjct: 82 PHHELDSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
Query: 137 NMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
++ +K T RGF F+ F + DVV+K+ + ++ VE
Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVE 181
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+K+F+GGL T E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 77 NRPHNIDGRVVETKRAVPRDEIGKP 101
H I+ ++VE K+A P++ + P
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMFPP 194
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 103/167 (61%), Gaps = 8/167 (4%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
PR+ ++ + E K+FIGGL + TT + L+ +F ++G++VD + DPIT RSRGFGF
Sbjct: 82 PRHTEAATAQREEW-KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGF 140
Query: 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEED 121
+ + E++ VD M + H ++G+V++ KRA + VKK+FVGGL D E+
Sbjct: 141 VLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM------KTKEPVKKIFVGGLSPDTPEE 194
Query: 122 DLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSK 168
+REYF FG +ES+ + + +T +RGF FI F + + V KI+ K
Sbjct: 195 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 241
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E ++K+F+GGL T +E ++ +F +GE+ + + D T + RGF FIT+ E + V
Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
M + HN+ E K A+ ++
Sbjct: 237 IMEKKYHNVGLSKCEIKVAMSKE 259
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 98/167 (58%), Gaps = 7/167 (4%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
P S K+FIGGL + T+ + L + ++GE+VD + DP+T RSRGFGF+ + +A VD
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 73 DAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFG 131
+ + H +DG++++ KRA P KK+FVGGL D E+ ++EYF FG
Sbjct: 107 KVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFG 160
Query: 132 TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
IE++ + + +T +RGF FI + D + V K++ S+ + + E
Sbjct: 161 EIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCE 207
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E +KVF+GGL T++E ++ +F +GEI ++ + D T RGF FITY++ + V
Sbjct: 133 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 192
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
+ +R H I E K A P++
Sbjct: 193 LLESRYHQIGSGKCEIKVAQPKE 215
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 99/166 (59%), Gaps = 8/166 (4%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E K+F+GGL + T+ + L+ +F ++GE+VD + DP T RSRGFGFI + ++ V+
Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Query: 74 AMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGT 132
+ + H +DGRV++ K+A+ + VKK+FVGGL + E+ +REYF QFG
Sbjct: 132 VLDQKEHRLDGRVIDPKKAMAMKK-------DPVKKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 133 IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
IE++ + + + +RGF FI F + D V K++ K + + E
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCE 230
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75
++K+F+GGL+ T+E ++ +F Q+GEI + + DP + RGF FIT+ E V +
Sbjct: 158 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL 217
Query: 76 SNRPHNIDGRVVETKRAVPRD 96
+ H + G E K A P++
Sbjct: 218 EKKFHTVSGSKCEIKVAQPKE 238
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 96 DEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIE 154
D+I + KMFVGGL D + DL++YF++FG + + + TG RGF FI
Sbjct: 63 DQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFIL 122
Query: 155 FNDYDVVDKIVLSKITLLLDRRV 177
F D V+K VL + LD RV
Sbjct: 123 FKDSSSVEK-VLDQKEHRLDGRV 144
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL + T+ + L + ++GE+VD + DP+T RSRGFGF+ + +A VD +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 78 RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 136
+ H +DG++++ KRA P KK+FVGGL D E+ ++EYF FG IE++
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 262
Query: 137 NMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
+ + +T +RGF FI + D + V K++ S+ + + E
Sbjct: 263 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCE 304
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E +KVF+GGL T++E ++ +F +GEI ++ + D T RGF FITY++ + V
Sbjct: 230 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
+ +R H I E K A P++
Sbjct: 290 LLESRYHQIGSGKCEIKVAQPKE 312
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 9/167 (5%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E K+F+GGL + T+ + L+ +F ++GE+VD + DP T RSRGFGFI + +A V+
Sbjct: 66 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 125
Query: 74 AMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKDQE--EDDLREYFSQFG 131
+ + H +DGRV++ K+A+ + VKK+FVGGL + E+ +REYF +FG
Sbjct: 126 VLDQKEHRLDGRVIDPKKAMAMKK-------DPVKKIFVGGLNPESPTEEKIREYFGEFG 178
Query: 132 TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
IE++ + + + +RGF FI F + + V K++ K + + E
Sbjct: 179 EIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCE 225
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 16 LRKVFIGGLDYRT-TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
++K+F+GGL+ + T+E ++ +F ++GEI + + DP + RGF FIT+ E + V
Sbjct: 152 VKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Query: 75 MSNRPHNIDGRVVETKRAVPRD 96
+ + H + G E K A P++
Sbjct: 212 LEKKFHTVSGSKCEIKVAQPKE 233
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 96 DEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIE 154
D+I + KMFVGGL D + DL++YF++FG + + + TG RGF FI
Sbjct: 57 DQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFIL 116
Query: 155 FNDYDVVDKIVLSKITLLLDRRV 177
F D V+K VL + LD RV
Sbjct: 117 FKDAASVEK-VLDQKEHRLDGRV 138
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 99/162 (61%), Gaps = 3/162 (1%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+F+GGL + TT E+L +F ++G+I+D VVMK+ + RSRGFGF+T+++ V+ + N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 78 RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESV 136
PH +DGR ++ K PR + KP+ K+F+GGL E DLR +F+++G + V
Sbjct: 68 GPHTLDGRTIDPKPCNPRT-LQKPKKGGGY-KVFLGGLPSNVTETDLRTFFNRYGKVTEV 125
Query: 137 NMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
++ ++E RGF F+ F + V+ + + L ++VE
Sbjct: 126 VIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVE 167
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 7 DSKCTEPESLRK--------VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSR 58
D K P +L+K VF+GGL T+ L+ FF ++G++ +VV+M D K+SR
Sbjct: 78 DPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSR 137
Query: 59 GFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKDQ 118
GFGF+++ E V+ + R N++G+ VE K+A PRD G +N + VGG +
Sbjct: 138 GFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNST----VGGAYGK 193
Query: 119 EEDDLREYFSQFGTI 133
++ + I
Sbjct: 194 LGNECSHWGPHHAPI 208
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL + T+ + L + ++GE+VD + DP+T RSRGFGF+ + +A VD +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 78 RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 136
+ H +DG++++ KRA P KK+FVGGL D E+ ++EYF FG IE++
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 143
Query: 137 NMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
+ + +T +RGF FI + D + V K++ S+ + + E
Sbjct: 144 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCE 185
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E +KVF+GGL T++E ++ +F +GEI ++ + D T RGF FITY++ + V
Sbjct: 111 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 170
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
+ +R H I E K A P++
Sbjct: 171 LLESRYHQIGSGKCEIKVAQPKE 193
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL + T+ + L + ++GE+VD + DP+T RSRGFGF+ + +A V+ +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 78 RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 136
+ H +DG++++ KRA P KK+FVGGL D E+ ++EYF FG IE++
Sbjct: 91 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 144
Query: 137 NMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
+ + +T +RGF FI + D + V K++ S+ + + E
Sbjct: 145 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCE 186
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E +KVF+GGL T++E ++ +F +GEI ++ + D T RGF FITY++ + V
Sbjct: 112 EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 171
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
+ +R H I E K A P++
Sbjct: 172 LLESRYHQIGSGKCEIKVAQPKE 194
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL + T+ + L + ++GE++D + DP+T RSRGFGF+ + +A VD +
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 78 RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 136
+ H +DG++++ KRA P KK+FVGGL + E+ +++YF FG IE++
Sbjct: 95 KEHKLDGKLIDPKRAKALQGKEPP------KKVFVGGLSPETTEEQIKQYFGGFGEIENI 148
Query: 137 NMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
+ + +T +RGF F+ + D + V K++ S+ + + E
Sbjct: 149 ELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCE 190
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
E +KVF+GGL TT+E ++ +F +GEI ++ + D T RGF F+TY++ + V
Sbjct: 116 EPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQK 175
Query: 74 AMSNRPHNIDGRVVETKRAVPRD 96
+ +R H I E K A P++
Sbjct: 176 LLESRFHQIGTGKCEIKAAQPKE 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,383,360
Number of Sequences: 539616
Number of extensions: 2578435
Number of successful extensions: 9434
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 7262
Number of HSP's gapped (non-prelim): 1856
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)