Query psy2871
Match_columns 178
No_of_seqs 112 out of 1363
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 19:01:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 2.8E-34 6E-39 221.9 20.4 157 12-174 103-262 (346)
2 TIGR01645 half-pint poly-U bin 100.0 8.9E-33 1.9E-37 224.2 19.8 164 14-177 105-276 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.4E-32 2E-36 210.1 20.0 154 15-174 2-158 (352)
4 TIGR01622 SF-CC1 splicing fact 100.0 2.2E-31 4.7E-36 214.6 21.3 165 13-177 86-258 (457)
5 KOG0148|consensus 100.0 9.6E-31 2.1E-35 188.8 15.9 156 16-177 62-230 (321)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-29 3E-34 197.9 21.0 163 15-177 88-341 (352)
7 TIGR01628 PABP-1234 polyadenyl 100.0 6.1E-30 1.3E-34 210.8 19.0 155 18-177 2-159 (562)
8 TIGR01628 PABP-1234 polyadenyl 100.0 3.2E-28 7E-33 200.6 19.7 163 13-177 175-356 (562)
9 KOG0144|consensus 100.0 2.6E-29 5.7E-34 191.4 12.1 157 13-175 31-194 (510)
10 KOG0145|consensus 100.0 9.8E-29 2.1E-33 177.8 13.4 153 12-170 37-191 (360)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.7E-28 1.7E-32 196.3 19.9 160 12-177 171-367 (509)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.6E-27 1.2E-31 191.3 20.9 165 13-177 292-494 (509)
13 KOG0131|consensus 100.0 5E-28 1.1E-32 165.6 11.0 157 13-174 6-165 (203)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 8.8E-27 1.9E-31 188.5 19.9 150 15-174 1-161 (481)
15 KOG0117|consensus 100.0 3.3E-27 7.2E-32 180.6 14.6 158 12-178 160-324 (506)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.4E-26 7.5E-31 185.1 21.3 156 13-175 272-464 (481)
17 TIGR01648 hnRNP-R-Q heterogene 100.0 1.3E-26 2.8E-31 188.0 18.7 157 13-178 55-300 (578)
18 KOG0127|consensus 99.9 6.4E-26 1.4E-30 177.4 14.9 160 17-177 6-188 (678)
19 KOG0127|consensus 99.9 1.5E-25 3.4E-30 175.3 16.6 151 16-167 117-353 (678)
20 KOG4205|consensus 99.9 2.3E-26 5E-31 173.6 10.9 164 15-178 5-169 (311)
21 KOG0117|consensus 99.9 2.3E-24 5.1E-29 165.1 17.1 142 14-167 81-227 (506)
22 TIGR01622 SF-CC1 splicing fact 99.9 8.1E-24 1.8E-28 170.7 20.8 159 15-177 185-440 (457)
23 KOG0124|consensus 99.9 2.9E-25 6.3E-30 166.7 9.2 159 17-175 114-280 (544)
24 KOG0123|consensus 99.9 8.5E-24 1.8E-28 164.6 15.3 140 18-177 3-145 (369)
25 KOG0109|consensus 99.9 5.7E-24 1.2E-28 155.3 10.2 136 18-177 4-142 (346)
26 KOG0145|consensus 99.9 8.4E-23 1.8E-27 147.3 14.2 164 12-175 123-347 (360)
27 KOG0110|consensus 99.9 2.1E-22 4.5E-27 161.9 14.0 159 19-177 518-685 (725)
28 KOG0123|consensus 99.9 3.6E-21 7.7E-26 150.0 14.3 151 19-173 79-233 (369)
29 KOG0146|consensus 99.9 4.1E-21 9E-26 139.1 12.5 160 15-175 18-354 (371)
30 KOG0148|consensus 99.9 2.2E-21 4.8E-26 140.5 10.2 130 12-176 2-132 (321)
31 KOG0144|consensus 99.9 4.8E-21 1E-25 146.6 11.2 90 7-97 115-208 (510)
32 KOG0147|consensus 99.9 1E-21 2.2E-26 154.1 7.7 168 10-177 173-350 (549)
33 TIGR01645 half-pint poly-U bin 99.9 1.4E-19 3.1E-24 147.6 20.2 81 14-94 202-283 (612)
34 KOG4211|consensus 99.8 4.2E-20 9.1E-25 143.5 15.2 163 12-178 6-175 (510)
35 KOG0105|consensus 99.8 1.2E-19 2.5E-24 125.0 14.8 145 13-167 3-169 (241)
36 PLN03134 glycine-rich RNA-bind 99.8 1.1E-18 2.5E-23 119.6 11.9 84 14-97 32-116 (144)
37 KOG4206|consensus 99.8 8.6E-18 1.9E-22 119.4 14.8 146 14-167 7-202 (221)
38 KOG0147|consensus 99.7 1E-17 2.2E-22 131.8 10.7 156 16-176 278-518 (549)
39 PF00076 RRM_1: RNA recognitio 99.7 3.9E-17 8.5E-22 98.5 9.1 69 19-88 1-70 (70)
40 KOG1457|consensus 99.7 1.3E-16 2.8E-21 113.1 12.9 153 12-168 30-268 (284)
41 KOG0122|consensus 99.7 1.2E-16 2.5E-21 114.6 10.5 83 13-95 186-269 (270)
42 KOG0129|consensus 99.7 9.7E-16 2.1E-20 120.1 15.2 166 7-172 250-437 (520)
43 KOG0106|consensus 99.7 6.3E-17 1.4E-21 115.9 7.6 145 17-177 2-163 (216)
44 KOG1548|consensus 99.7 2.2E-15 4.8E-20 112.9 16.0 160 13-177 131-344 (382)
45 KOG0149|consensus 99.7 1.2E-16 2.6E-21 114.1 8.1 83 12-94 8-90 (247)
46 COG0724 RNA-binding proteins ( 99.7 2.5E-15 5.5E-20 112.7 15.9 150 16-165 115-284 (306)
47 PLN03134 glycine-rich RNA-bind 99.7 3.7E-16 8.1E-21 107.1 9.5 73 105-177 32-106 (144)
48 PF14259 RRM_6: RNA recognitio 99.7 4.6E-16 9.9E-21 94.0 8.8 69 19-88 1-70 (70)
49 PLN03120 nucleic acid binding 99.7 1.2E-15 2.6E-20 112.1 11.1 78 16-96 4-81 (260)
50 PF00076 RRM_1: RNA recognitio 99.7 1.1E-15 2.4E-20 92.0 8.6 67 110-177 1-69 (70)
51 KOG0149|consensus 99.6 6E-16 1.3E-20 110.5 7.6 75 103-177 8-83 (247)
52 TIGR01648 hnRNP-R-Q heterogene 99.6 2.9E-15 6.2E-20 122.3 11.9 114 14-135 231-370 (578)
53 KOG4212|consensus 99.6 3.9E-14 8.4E-19 109.4 16.2 153 15-169 43-277 (608)
54 KOG0113|consensus 99.6 4.6E-15 9.9E-20 109.3 10.3 84 10-93 95-179 (335)
55 PF14259 RRM_6: RNA recognitio 99.6 4E-15 8.8E-20 89.8 8.2 68 110-178 1-70 (70)
56 KOG0124|consensus 99.6 4.5E-14 9.8E-19 106.9 15.4 83 13-95 207-290 (544)
57 PLN03121 nucleic acid binding 99.6 1.2E-14 2.6E-19 105.3 11.0 78 15-95 4-81 (243)
58 KOG0121|consensus 99.6 3E-15 6.5E-20 97.4 6.9 84 13-96 33-117 (153)
59 TIGR01659 sex-lethal sex-letha 99.6 1E-14 2.2E-19 113.3 11.0 83 14-96 191-276 (346)
60 KOG0107|consensus 99.6 5.5E-15 1.2E-19 101.2 8.3 78 15-97 9-87 (195)
61 KOG0125|consensus 99.6 1E-14 2.2E-19 108.7 10.2 90 9-100 89-179 (376)
62 KOG0126|consensus 99.6 2.2E-16 4.7E-21 108.6 0.8 81 15-95 34-115 (219)
63 KOG0114|consensus 99.6 1.8E-14 3.8E-19 90.5 9.2 88 7-97 9-97 (124)
64 KOG0110|consensus 99.6 1.8E-14 3.9E-19 116.7 10.8 161 12-178 381-591 (725)
65 smart00362 RRM_2 RNA recogniti 99.6 5.6E-14 1.2E-18 84.3 9.6 71 18-90 1-72 (72)
66 KOG0120|consensus 99.6 6.3E-14 1.4E-18 111.5 12.3 169 9-177 282-484 (500)
67 KOG4207|consensus 99.5 2.5E-14 5.3E-19 100.5 7.1 86 10-95 7-93 (256)
68 smart00360 RRM RNA recognition 99.5 1E-13 2.2E-18 82.9 8.8 70 21-90 1-71 (71)
69 KOG1190|consensus 99.5 6.1E-13 1.3E-17 101.9 14.8 151 16-175 297-480 (492)
70 PLN03120 nucleic acid binding 99.5 6.5E-14 1.4E-18 103.0 8.6 68 107-177 4-72 (260)
71 KOG0130|consensus 99.5 2.9E-14 6.3E-19 93.7 5.9 80 16-95 72-152 (170)
72 PLN03213 repressor of silencin 99.5 1.2E-13 2.6E-18 108.3 9.7 79 13-95 7-88 (759)
73 cd00590 RRM RRM (RNA recogniti 99.5 5.4E-13 1.2E-17 80.4 10.0 73 18-91 1-74 (74)
74 KOG0111|consensus 99.5 3E-14 6.4E-19 101.0 4.9 85 14-98 8-93 (298)
75 KOG1365|consensus 99.5 3.6E-14 7.8E-19 107.9 4.5 162 15-178 160-355 (508)
76 KOG1190|consensus 99.5 2.9E-13 6.2E-18 103.7 9.2 149 9-167 21-207 (492)
77 KOG0125|consensus 99.5 1.5E-13 3.2E-18 102.6 7.3 73 104-178 93-167 (376)
78 KOG0108|consensus 99.5 3.2E-13 6.9E-18 106.8 9.3 81 17-97 19-100 (435)
79 KOG0113|consensus 99.5 4.4E-13 9.5E-18 98.9 8.6 74 104-177 98-173 (335)
80 smart00362 RRM_2 RNA recogniti 99.4 9E-13 2E-17 78.9 7.9 67 109-177 1-69 (72)
81 PLN03121 nucleic acid binding 99.4 8.1E-13 1.8E-17 95.9 8.7 68 107-177 5-73 (243)
82 KOG0121|consensus 99.4 4.5E-13 9.6E-18 87.4 6.5 73 105-177 34-108 (153)
83 smart00360 RRM RNA recognition 99.4 1.5E-12 3.2E-17 77.7 7.5 66 112-177 1-68 (71)
84 KOG1365|consensus 99.4 5.2E-12 1.1E-16 96.3 10.5 169 9-178 53-236 (508)
85 KOG4211|consensus 99.4 1.4E-11 3E-16 96.6 12.0 167 9-178 96-351 (510)
86 KOG0122|consensus 99.4 3.4E-12 7.4E-17 91.9 7.7 66 105-170 187-253 (270)
87 KOG0120|consensus 99.3 4.8E-12 1E-16 100.9 7.9 157 12-174 171-357 (500)
88 PF13893 RRM_5: RNA recognitio 99.3 1.5E-11 3.3E-16 70.8 7.7 55 33-92 1-56 (56)
89 cd00590 RRM RRM (RNA recogniti 99.3 2.1E-11 4.6E-16 73.3 8.4 68 109-177 1-70 (74)
90 KOG4207|consensus 99.3 4.7E-12 1E-16 89.2 5.8 72 106-177 12-85 (256)
91 smart00361 RRM_1 RNA recogniti 99.3 3.3E-11 7.1E-16 72.6 8.2 60 30-89 2-69 (70)
92 KOG0130|consensus 99.3 8.4E-12 1.8E-16 82.2 5.5 72 107-178 72-145 (170)
93 KOG0126|consensus 99.3 3.9E-13 8.6E-18 92.7 -0.9 71 107-177 35-107 (219)
94 smart00361 RRM_1 RNA recogniti 99.3 3E-11 6.4E-16 72.8 6.8 58 120-177 2-67 (70)
95 KOG0153|consensus 99.3 3.5E-11 7.5E-16 90.7 8.4 81 8-94 220-302 (377)
96 KOG0107|consensus 99.2 1.7E-11 3.8E-16 84.2 6.2 67 106-177 9-77 (195)
97 COG0724 RNA-binding proteins ( 99.2 3.6E-11 7.8E-16 90.1 8.5 71 107-177 115-187 (306)
98 KOG0114|consensus 99.2 6.8E-11 1.5E-15 74.5 8.1 70 103-175 14-85 (124)
99 KOG1456|consensus 99.2 3.3E-10 7.1E-15 86.4 12.7 151 8-169 23-180 (494)
100 PLN03213 repressor of silencin 99.2 4.6E-11 1E-15 94.0 8.3 69 105-177 8-80 (759)
101 KOG0131|consensus 99.2 1.9E-11 4.2E-16 84.4 5.3 72 106-177 8-81 (203)
102 KOG0415|consensus 99.2 4.1E-11 8.8E-16 90.7 7.4 83 12-94 235-318 (479)
103 KOG0111|consensus 99.2 1.5E-11 3.2E-16 87.5 3.2 73 105-177 8-82 (298)
104 KOG0132|consensus 99.2 1E-10 2.2E-15 96.1 8.1 106 15-128 420-528 (894)
105 KOG4212|consensus 99.2 1.7E-09 3.6E-14 84.2 14.0 65 12-77 211-275 (608)
106 KOG0108|consensus 99.2 8.4E-11 1.8E-15 93.2 6.7 70 108-177 19-90 (435)
107 KOG4205|consensus 99.1 1.7E-10 3.6E-15 87.9 7.9 160 4-164 85-250 (311)
108 KOG4676|consensus 99.1 3.3E-11 7.2E-16 92.1 4.1 153 16-172 7-213 (479)
109 KOG1456|consensus 99.1 9.1E-09 2E-13 78.6 16.2 153 11-170 282-469 (494)
110 KOG0128|consensus 99.1 4E-12 8.7E-17 105.1 -2.0 130 15-167 666-796 (881)
111 PF13893 RRM_5: RNA recognitio 99.1 2.7E-10 5.9E-15 65.5 6.1 50 123-177 1-51 (56)
112 KOG4210|consensus 99.1 1.6E-10 3.5E-15 87.5 5.9 153 15-167 87-246 (285)
113 KOG4454|consensus 99.1 3.3E-11 7.2E-16 85.6 1.2 137 11-165 4-142 (267)
114 KOG0105|consensus 99.1 2.6E-10 5.5E-15 79.2 5.5 70 105-177 4-75 (241)
115 KOG0146|consensus 99.0 2.9E-10 6.3E-15 83.2 5.2 88 10-97 279-367 (371)
116 KOG4208|consensus 99.0 9.5E-10 2.1E-14 77.6 7.3 81 15-95 48-130 (214)
117 KOG0116|consensus 99.0 9.5E-10 2.1E-14 86.8 7.6 80 16-95 288-367 (419)
118 KOG4660|consensus 99.0 6.1E-10 1.3E-14 88.7 5.8 147 8-166 67-231 (549)
119 KOG0415|consensus 99.0 7.4E-10 1.6E-14 84.0 5.7 73 105-177 237-311 (479)
120 KOG0226|consensus 99.0 1.1E-09 2.4E-14 79.5 6.2 160 16-176 96-260 (290)
121 KOG4208|consensus 98.9 3.3E-09 7E-14 74.9 6.8 72 105-176 47-120 (214)
122 KOG0109|consensus 98.9 2.5E-09 5.5E-14 79.1 6.3 78 13-98 75-153 (346)
123 KOG0112|consensus 98.9 1.4E-09 3.1E-14 90.8 4.2 144 13-171 369-514 (975)
124 KOG0153|consensus 98.9 5.5E-09 1.2E-13 79.0 6.9 69 103-177 224-295 (377)
125 KOG4661|consensus 98.9 1.2E-08 2.6E-13 81.9 8.7 83 13-95 402-485 (940)
126 PF04059 RRM_2: RNA recognitio 98.9 3.4E-08 7.3E-13 62.7 8.8 67 17-83 2-71 (97)
127 KOG0533|consensus 98.8 3.3E-08 7.2E-13 72.7 8.8 86 12-98 79-165 (243)
128 KOG4206|consensus 98.8 2.9E-08 6.3E-13 71.2 7.1 69 106-177 8-82 (221)
129 KOG4307|consensus 98.8 2.6E-08 5.6E-13 81.5 7.5 161 13-174 308-502 (944)
130 KOG0226|consensus 98.7 2.2E-08 4.8E-13 72.9 4.3 89 8-96 182-271 (290)
131 KOG0132|consensus 98.7 4.4E-08 9.5E-13 81.0 6.2 66 106-177 420-487 (894)
132 KOG4661|consensus 98.7 5.2E-08 1.1E-12 78.3 6.2 71 107-177 405-477 (940)
133 KOG0116|consensus 98.6 4.9E-08 1.1E-12 77.2 5.6 71 107-177 288-359 (419)
134 KOG4209|consensus 98.6 7E-08 1.5E-12 71.0 5.7 85 11-95 96-180 (231)
135 KOG4660|consensus 98.6 5.9E-08 1.3E-12 77.6 4.5 72 101-177 69-142 (549)
136 KOG0151|consensus 98.5 3.1E-07 6.8E-12 75.5 7.8 83 13-95 171-257 (877)
137 KOG4209|consensus 98.5 2.3E-07 5E-12 68.3 5.2 77 102-178 96-173 (231)
138 KOG0533|consensus 98.4 7.8E-07 1.7E-11 65.6 7.0 73 104-177 80-154 (243)
139 PF08777 RRM_3: RNA binding mo 98.3 1.8E-06 3.9E-11 55.9 6.0 53 109-167 3-56 (105)
140 KOG0128|consensus 98.3 3.3E-08 7.1E-13 82.5 -3.1 160 16-175 571-736 (881)
141 KOG2193|consensus 98.3 8.8E-08 1.9E-12 74.5 -1.0 134 17-167 2-138 (584)
142 PF11608 Limkain-b1: Limkain b 98.3 7.1E-06 1.5E-10 50.1 7.0 70 18-97 4-79 (90)
143 KOG4454|consensus 98.3 4.9E-07 1.1E-11 64.7 2.3 70 106-177 8-79 (267)
144 PF04059 RRM_2: RNA recognitio 98.2 2.1E-05 4.5E-10 50.0 8.1 66 108-173 2-71 (97)
145 PF14605 Nup35_RRM_2: Nup53/35 98.2 1E-05 2.2E-10 45.7 5.9 52 108-165 2-53 (53)
146 PF05172 Nup35_RRM: Nup53/35/4 98.2 1.9E-05 4E-10 50.6 7.7 70 107-176 6-82 (100)
147 PF08777 RRM_3: RNA binding mo 98.1 1.1E-05 2.3E-10 52.4 5.6 54 18-77 3-56 (105)
148 KOG1457|consensus 98.0 9.2E-06 2E-10 58.5 4.2 66 11-80 205-271 (284)
149 PF14605 Nup35_RRM_2: Nup53/35 98.0 2.8E-05 6E-10 43.9 5.4 52 17-75 2-53 (53)
150 KOG1995|consensus 98.0 1.5E-05 3.3E-10 61.0 5.6 89 8-96 58-155 (351)
151 KOG4210|consensus 98.0 7.5E-06 1.6E-10 62.3 3.9 82 16-97 184-266 (285)
152 KOG1548|consensus 98.0 2.9E-05 6.3E-10 59.3 6.9 71 106-177 133-213 (382)
153 KOG0151|consensus 98.0 1.7E-05 3.7E-10 65.6 5.8 66 105-170 172-241 (877)
154 PF05172 Nup35_RRM: Nup53/35/4 98.0 7.2E-05 1.6E-09 47.9 7.5 79 14-93 4-90 (100)
155 KOG2314|consensus 97.8 6.4E-05 1.4E-09 60.9 7.0 61 106-167 57-124 (698)
156 KOG0106|consensus 97.8 1.8E-05 4E-10 57.3 3.0 60 108-175 2-63 (216)
157 KOG1855|consensus 97.8 8.4E-05 1.8E-09 58.3 6.5 70 103-172 227-310 (484)
158 COG5175 MOT2 Transcriptional r 97.8 9.4E-05 2E-09 56.5 6.5 80 16-95 114-203 (480)
159 KOG0129|consensus 97.7 0.00019 4.1E-09 57.6 7.7 69 9-77 363-432 (520)
160 PF08675 RNA_bind: RNA binding 97.5 0.00049 1.1E-08 42.1 6.1 54 15-77 8-61 (87)
161 KOG4307|consensus 97.5 0.00046 1E-08 57.4 7.6 77 14-90 865-942 (944)
162 KOG3152|consensus 97.5 8E-05 1.7E-09 54.7 2.4 71 16-86 74-157 (278)
163 KOG1996|consensus 97.4 0.00036 7.7E-09 52.4 5.6 57 120-176 300-357 (378)
164 PF10309 DUF2414: Protein of u 97.4 0.0017 3.8E-08 37.6 7.0 53 107-167 5-61 (62)
165 COG5175 MOT2 Transcriptional r 97.4 0.00038 8.2E-09 53.3 5.4 69 108-176 115-194 (480)
166 KOG4849|consensus 97.4 0.00026 5.6E-09 54.3 4.1 74 13-86 77-153 (498)
167 PF11608 Limkain-b1: Limkain b 97.3 0.0014 3.1E-08 40.2 6.4 60 108-177 3-69 (90)
168 KOG1995|consensus 97.3 0.00035 7.6E-09 53.7 4.5 73 105-177 64-146 (351)
169 KOG4849|consensus 97.2 0.00048 1E-08 52.9 4.0 71 105-175 78-152 (498)
170 PF10309 DUF2414: Protein of u 97.2 0.0046 1E-07 35.8 6.9 53 17-77 6-61 (62)
171 PF08952 DUF1866: Domain of un 97.1 0.0037 8E-08 42.6 7.4 58 32-97 52-109 (146)
172 KOG0115|consensus 97.1 0.0016 3.5E-08 48.0 6.0 77 78-168 15-92 (275)
173 KOG2314|consensus 97.0 0.0013 2.7E-08 53.6 5.0 78 12-90 54-139 (698)
174 KOG3152|consensus 96.8 0.00091 2E-08 49.3 2.5 71 106-176 73-157 (278)
175 PF15023 DUF4523: Protein of u 96.8 0.0071 1.5E-07 40.9 6.2 66 103-175 82-152 (166)
176 KOG4285|consensus 96.7 0.0074 1.6E-07 45.7 6.3 63 107-175 197-259 (350)
177 PF08952 DUF1866: Domain of un 96.6 0.0076 1.6E-07 41.1 5.8 49 121-177 51-99 (146)
178 PF15023 DUF4523: Protein of u 96.5 0.0095 2.1E-07 40.3 5.6 77 10-93 80-160 (166)
179 KOG2202|consensus 96.4 0.0012 2.6E-08 48.7 1.0 56 121-177 83-140 (260)
180 PF07576 BRAP2: BRCA1-associat 96.3 0.072 1.6E-06 34.7 8.7 72 10-83 7-80 (110)
181 PF07292 NID: Nmi/IFP 35 domai 96.3 0.0088 1.9E-07 37.3 4.0 68 61-128 1-74 (88)
182 PF07576 BRAP2: BRCA1-associat 96.2 0.11 2.3E-06 34.0 9.0 65 107-173 13-80 (110)
183 KOG4676|consensus 96.1 0.0093 2E-07 46.7 4.5 68 108-175 8-79 (479)
184 KOG1855|consensus 96.1 0.0097 2.1E-07 47.1 4.5 67 12-78 227-306 (484)
185 PF14111 DUF4283: Domain of un 96.1 0.018 3.8E-07 39.6 5.3 116 19-139 18-138 (153)
186 PF08675 RNA_bind: RNA binding 96.1 0.051 1.1E-06 33.4 6.5 53 106-167 8-61 (87)
187 KOG0112|consensus 95.9 0.012 2.5E-07 50.7 4.5 77 12-94 451-530 (975)
188 KOG2202|consensus 95.8 0.0049 1.1E-07 45.6 1.5 62 31-93 83-146 (260)
189 KOG2416|consensus 95.7 0.013 2.9E-07 48.2 3.8 78 9-92 437-519 (718)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.027 5.9E-07 40.0 4.9 69 106-174 6-82 (176)
191 KOG4285|consensus 95.6 0.11 2.4E-06 39.5 8.2 76 16-98 197-273 (350)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.018 3.9E-07 40.9 3.7 81 14-94 5-97 (176)
193 KOG0115|consensus 95.5 0.018 3.8E-07 42.7 3.5 60 17-77 32-91 (275)
194 KOG1996|consensus 95.4 0.089 1.9E-06 39.9 6.8 63 30-92 300-364 (378)
195 KOG2135|consensus 95.3 0.023 4.9E-07 45.6 3.6 78 14-97 370-448 (526)
196 KOG0804|consensus 95.0 0.14 3E-06 41.1 7.2 70 12-83 70-141 (493)
197 PF04847 Calcipressin: Calcipr 95.0 0.2 4.3E-06 35.8 7.5 62 29-96 8-72 (184)
198 KOG0804|consensus 94.8 0.23 5E-06 39.9 8.1 64 107-172 74-140 (493)
199 KOG2068|consensus 94.6 0.022 4.8E-07 43.8 1.9 69 108-176 78-154 (327)
200 KOG2193|consensus 94.4 0.04 8.6E-07 43.8 3.0 65 108-178 2-69 (584)
201 PF10567 Nab6_mRNP_bdg: RNA-re 94.3 1.8 4E-05 33.0 11.7 153 15-167 14-210 (309)
202 KOG2591|consensus 94.3 0.25 5.5E-06 40.7 7.3 65 106-177 174-244 (684)
203 PF11767 SET_assoc: Histone ly 93.7 0.62 1.3E-05 27.4 6.5 54 27-89 11-65 (66)
204 KOG2416|consensus 93.2 0.089 1.9E-06 43.6 3.0 62 104-171 441-505 (718)
205 KOG2068|consensus 92.1 0.067 1.4E-06 41.2 1.0 79 17-95 78-163 (327)
206 KOG2591|consensus 91.8 0.51 1.1E-05 39.1 5.6 67 15-88 174-245 (684)
207 KOG4574|consensus 90.3 0.25 5.3E-06 42.8 2.7 74 20-99 302-378 (1007)
208 KOG4483|consensus 87.4 4.1 8.8E-05 32.6 7.4 65 10-81 385-450 (528)
209 PF15513 DUF4651: Domain of un 85.0 3.2 6.9E-05 24.0 4.3 22 31-52 9-30 (62)
210 KOG4574|consensus 85.0 0.45 9.8E-06 41.3 1.2 53 109-167 300-353 (1007)
211 KOG2135|consensus 84.5 0.43 9.2E-06 38.7 0.8 54 118-177 385-438 (526)
212 KOG2253|consensus 83.0 1.2 2.7E-05 37.5 3.0 63 104-175 37-101 (668)
213 PF04847 Calcipressin: Calcipr 80.2 6.1 0.00013 28.3 5.3 52 119-176 8-62 (184)
214 KOG2318|consensus 79.7 9.9 0.00021 32.0 6.9 75 12-86 170-297 (650)
215 TIGR02542 B_forsyth_147 Bacter 77.6 11 0.00023 24.8 5.3 116 23-158 10-129 (145)
216 PF11767 SET_assoc: Histone ly 77.0 12 0.00027 21.9 5.4 50 118-176 12-62 (66)
217 KOG2891|consensus 74.4 5.2 0.00011 30.5 3.8 39 103-141 145-196 (445)
218 PF03880 DbpA: DbpA RNA bindin 74.3 16 0.00034 21.7 5.9 57 27-92 12-74 (74)
219 KOG4483|consensus 73.6 14 0.00031 29.7 6.0 56 105-167 389-446 (528)
220 PF10567 Nab6_mRNP_bdg: RNA-re 69.6 12 0.00025 28.9 4.6 61 103-163 11-79 (309)
221 COG5193 LHP1 La protein, small 68.2 2.3 5E-05 33.9 0.8 63 14-76 172-244 (438)
222 KOG4213|consensus 67.8 8.7 0.00019 27.3 3.4 66 16-87 111-179 (205)
223 KOG3424|consensus 66.3 33 0.00072 22.7 5.6 46 27-73 34-84 (132)
224 PF03468 XS: XS domain; Inter 63.2 18 0.00038 23.8 4.1 38 118-158 29-66 (116)
225 KOG4008|consensus 63.0 8 0.00017 28.7 2.6 37 11-47 35-71 (261)
226 PF07292 NID: Nmi/IFP 35 domai 60.7 6.9 0.00015 24.4 1.7 26 12-37 48-73 (88)
227 KOG2253|consensus 56.5 9.4 0.0002 32.6 2.3 69 14-91 38-107 (668)
228 KOG2891|consensus 55.9 13 0.00029 28.4 2.8 32 17-48 150-193 (445)
229 KOG4410|consensus 53.4 51 0.0011 25.5 5.5 47 17-69 331-378 (396)
230 COG5638 Uncharacterized conser 51.7 1.2E+02 0.0025 24.9 7.5 42 11-52 141-187 (622)
231 PF14893 PNMA: PNMA 47.1 17 0.00038 28.6 2.4 57 12-68 14-72 (331)
232 COG5584 Predicted small secret 45.8 54 0.0012 20.8 3.9 32 22-53 28-59 (103)
233 KOG4019|consensus 43.1 21 0.00045 25.5 2.0 124 16-145 10-156 (193)
234 KOG2295|consensus 42.9 4.7 0.0001 33.6 -1.3 64 14-77 229-295 (648)
235 PF11411 DNA_ligase_IV: DNA li 40.2 23 0.00051 18.0 1.4 16 26-41 19-34 (36)
236 PF15407 Spo7_2_N: Sporulation 40.2 11 0.00023 22.2 0.2 26 14-39 25-50 (67)
237 PF06919 Phage_T4_Gp30_7: Phag 37.1 60 0.0013 20.9 3.2 24 129-158 28-51 (121)
238 KOG1295|consensus 37.0 43 0.00092 26.8 3.1 62 16-77 7-71 (376)
239 PRK14548 50S ribosomal protein 36.4 1.1E+02 0.0023 19.0 5.3 52 114-168 27-81 (84)
240 PF04026 SpoVG: SpoVG; InterP 35.9 81 0.0018 19.4 3.7 26 42-67 2-27 (84)
241 PF02714 DUF221: Domain of unk 34.8 45 0.00098 25.8 3.0 34 61-95 1-34 (325)
242 PF07530 PRE_C2HC: Associated 34.3 1E+02 0.0022 18.1 4.5 62 31-94 2-64 (68)
243 PF05189 RTC_insert: RNA 3'-te 33.3 1.1E+02 0.0023 19.4 4.1 48 19-66 13-65 (103)
244 PRK13259 regulatory protein Sp 32.9 87 0.0019 19.8 3.5 26 42-67 2-27 (94)
245 KOG0156|consensus 31.2 1.1E+02 0.0023 25.7 4.7 59 20-87 36-97 (489)
246 PF07872 DUF1659: Protein of u 30.5 59 0.0013 17.5 2.2 26 12-37 20-45 (47)
247 PRK01178 rps24e 30S ribosomal 29.8 1.5E+02 0.0033 18.9 5.0 46 27-73 30-80 (99)
248 COG0030 KsgA Dimethyladenosine 29.8 78 0.0017 24.1 3.4 34 17-50 96-129 (259)
249 PF11314 DUF3117: Protein of u 28.2 51 0.0011 18.0 1.6 21 1-21 1-21 (51)
250 TIGR03636 L23_arch archaeal ri 27.9 1.5E+02 0.0032 18.0 5.5 54 111-167 17-73 (77)
251 PF01282 Ribosomal_S24e: Ribos 27.8 1.5E+02 0.0033 18.2 5.9 47 26-73 11-62 (84)
252 KOG4410|consensus 27.8 1.3E+02 0.0028 23.3 4.2 48 107-159 330-378 (396)
253 PRK11558 putative ssRNA endonu 27.1 1.6E+02 0.0034 18.8 3.9 49 17-68 28-76 (97)
254 PF09707 Cas_Cas2CT1978: CRISP 26.6 1.7E+02 0.0036 18.2 4.4 47 17-66 26-72 (86)
255 PF01479 S4: S4 domain; Inter 24.9 92 0.002 16.3 2.4 23 156-178 14-36 (48)
256 PF14026 DUF4242: Protein of u 24.3 1.7E+02 0.0037 17.5 5.0 60 19-80 3-69 (77)
257 PF08156 NOP5NT: NOP5NT (NUC12 24.0 27 0.0006 20.4 0.1 37 121-167 27-63 (67)
258 KOG0862|consensus 23.8 51 0.0011 24.2 1.5 32 120-159 88-120 (216)
259 PF13046 DUF3906: Protein of u 23.8 99 0.0021 18.0 2.3 32 30-63 32-63 (64)
260 KOG0156|consensus 23.6 1.6E+02 0.0035 24.7 4.5 57 111-176 36-96 (489)
261 PF05573 NosL: NosL; InterPro 23.6 1.3E+02 0.0027 20.6 3.4 27 146-172 112-138 (149)
262 PTZ00071 40S ribosomal protein 23.5 2.4E+02 0.0053 19.1 5.3 45 27-72 35-85 (132)
263 COG0445 GidA Flavin-dependent 23.3 1.8E+02 0.0039 25.0 4.6 39 12-50 297-335 (621)
264 PF10281 Ish1: Putative stress 23.3 67 0.0015 16.2 1.5 16 118-133 4-19 (38)
265 PF00226 DnaJ: DnaJ domain; I 22.9 88 0.0019 17.5 2.2 19 22-40 6-24 (64)
266 KOG4008|consensus 22.7 80 0.0017 23.7 2.3 32 105-136 38-70 (261)
267 PHA01632 hypothetical protein 22.0 86 0.0019 17.7 1.8 20 110-129 19-39 (64)
268 cd06257 DnaJ DnaJ domain or J- 21.9 1E+02 0.0023 16.3 2.3 20 21-40 5-24 (55)
269 COG5507 Uncharacterized conser 21.9 1.3E+02 0.0028 19.3 2.8 38 130-167 48-85 (117)
270 PF00403 HMA: Heavy-metal-asso 21.1 1.6E+02 0.0035 16.1 6.4 56 18-79 1-60 (62)
271 TIGR01639 P_fal_TIGR01639 Plas 21.0 42 0.00092 19.2 0.5 22 23-44 5-26 (61)
272 PF15063 TC1: Thyroid cancer p 21.0 75 0.0016 19.2 1.5 28 16-43 25-52 (79)
273 COG5193 LHP1 La protein, small 20.7 76 0.0017 25.7 2.0 61 106-166 173-244 (438)
274 KOG4365|consensus 20.5 47 0.001 27.3 0.8 73 17-90 4-77 (572)
275 PF03439 Spt5-NGN: Early trans 20.3 1.7E+02 0.0036 17.8 3.1 22 57-78 43-64 (84)
276 CHL00123 rps6 ribosomal protei 20.2 2.4E+02 0.0052 17.7 5.4 58 18-77 10-81 (97)
277 smart00271 DnaJ DnaJ molecular 20.1 1.2E+02 0.0026 16.5 2.3 20 21-40 6-25 (60)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.8e-34 Score=221.88 Aligned_cols=157 Identities=24% Similarity=0.377 Sum_probs=142.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.....++|||+|||+++|+++|+++|+.||+|.+++|+.++.+++++|||||+|.+.++|.+|++. ++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 455678999999999999999999999999999999999998999999999999999999999987 8999999999999
Q ss_pred ecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-c
Q psy2871 91 RAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-K 168 (178)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~ 168 (178)
++.+... ....++|||+|||. +++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|.+|++. +
T Consensus 183 ~a~p~~~------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 183 YARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred ccccccc------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 8865432 22356899999999 99999999999999999999999988899999999999999999999998 5
Q ss_pred Ceeccc
Q psy2871 169 ITLLLD 174 (178)
Q Consensus 169 ~~~~~g 174 (178)
+..+.|
T Consensus 257 g~~~~g 262 (346)
T TIGR01659 257 NVIPEG 262 (346)
T ss_pred CCccCC
Confidence 445555
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=8.9e-33 Score=224.17 Aligned_cols=164 Identities=19% Similarity=0.445 Sum_probs=144.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
...++|||+|||+++++++|+++|+.||+|.+++++.++.+++++|||||+|.+.++|.+|++. ++..+.|+.|+|.++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4567999999999999999999999999999999999999999999999999999999999987 899999999999865
Q ss_pred CCCcccCC-----CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHH
Q psy2871 93 VPRDEIGK-----PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVL 166 (178)
Q Consensus 93 ~~~~~~~~-----~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~ 166 (178)
........ .......++|||+||+. +++++|+++|+.||.|.++++.++..++.++|||||+|++.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 43321111 11123457899999999 9999999999999999999999998888999999999999999999999
Q ss_pred h-cCeecccccc
Q psy2871 167 S-KITLLLDRRV 177 (178)
Q Consensus 167 ~-~~~~~~g~~v 177 (178)
. ++..+.|+.|
T Consensus 265 amNg~elgGr~L 276 (612)
T TIGR01645 265 SMNLFDLGGQYL 276 (612)
T ss_pred HhCCCeeCCeEE
Confidence 9 6677888765
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=9.4e-32 Score=210.14 Aligned_cols=154 Identities=23% Similarity=0.463 Sum_probs=139.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
+..+|||+|||+++++++|+++|+.||+|.+++++.++.+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 467999999999999999999999999999999999998999999999999999999999987 8999999999999986
Q ss_pred CCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCee
Q psy2871 94 PRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITL 171 (178)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~ 171 (178)
+... .....+|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|..|+.. ++..
T Consensus 82 ~~~~------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~ 155 (352)
T TIGR01661 82 PSSD------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT 155 (352)
T ss_pred cccc------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc
Confidence 5432 12345799999999 99999999999999999999999887889999999999999999999988 5555
Q ss_pred ccc
Q psy2871 172 LLD 174 (178)
Q Consensus 172 ~~g 174 (178)
+.|
T Consensus 156 ~~g 158 (352)
T TIGR01661 156 PSG 158 (352)
T ss_pred cCC
Confidence 544
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.2e-31 Score=214.61 Aligned_cols=165 Identities=27% Similarity=0.465 Sum_probs=145.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeec
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 92 (178)
+...++|||+|||..+++++|+++|+.||+|.+++++.++.++.++|||||+|.+.++|.+|+..++..+.|++|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 45578999999999999999999999999999999999998999999999999999999999999999999999999876
Q ss_pred CCCcccCC------CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHH
Q psy2871 93 VPRDEIGK------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (178)
Q Consensus 93 ~~~~~~~~------~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~ 165 (178)
........ ....+..++|||+|||. +++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 54332211 11123368999999999 999999999999999999999999888899999999999999999999
Q ss_pred Hh-cCeecccccc
Q psy2871 166 LS-KITLLLDRRV 177 (178)
Q Consensus 166 ~~-~~~~~~g~~v 177 (178)
.. ++..+.|++|
T Consensus 246 ~~l~g~~i~g~~i 258 (457)
T TIGR01622 246 EVMNGFELAGRPI 258 (457)
T ss_pred HhcCCcEECCEEE
Confidence 87 7777777765
No 5
>KOG0148|consensus
Probab=99.97 E-value=9.6e-31 Score=188.78 Aligned_cols=156 Identities=24% Similarity=0.483 Sum_probs=141.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCC
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~ 94 (178)
...+||+.|++.++-++|++.|.+||+|.++++++|..+++++||+||.|.+.++|+.|+.. ++.=|.+|.|+-.|+.-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56799999999999999999999999999999999999999999999999999999999998 89999999999999987
Q ss_pred CcccCC----------CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHH
Q psy2871 95 RDEIGK----------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 163 (178)
Q Consensus 95 ~~~~~~----------~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~ 163 (178)
+..... -..++.++++|++|++. ++|++|++.|++||.|..+++++++ |||||+|++.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHH
Confidence 763222 11345678999999999 9999999999999999999999986 499999999999999
Q ss_pred HHHh-cCeecccccc
Q psy2871 164 IVLS-KITLLLDRRV 177 (178)
Q Consensus 164 a~~~-~~~~~~g~~v 177 (178)
||.. +|..+.|..|
T Consensus 216 AIv~mNntei~G~~V 230 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLV 230 (321)
T ss_pred HHHHhcCceeCceEE
Confidence 9998 8888888765
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.4e-29 Score=197.88 Aligned_cols=163 Identities=23% Similarity=0.421 Sum_probs=139.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecC--eEEEEee
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVETKR 91 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~i~v~~ 91 (178)
...+|||+|||+++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|+.|++. ++..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 466899999999999999999999999999999999888889999999999999999999987 7777766 5688887
Q ss_pred cCCCcccCC----------------C------------------------------------------------------
Q psy2871 92 AVPRDEIGK----------------P------------------------------------------------------ 101 (178)
Q Consensus 92 ~~~~~~~~~----------------~------------------------------------------------------ 101 (178)
+........ .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 643321000 0
Q ss_pred ----------------CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHH
Q psy2871 102 ----------------EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164 (178)
Q Consensus 102 ----------------~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a 164 (178)
........|||+|||. +++++|+++|++||.|..++++.+..++.++|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0001123699999999 99999999999999999999999998999999999999999999999
Q ss_pred HHh-cCeecccccc
Q psy2871 165 VLS-KITLLLDRRV 177 (178)
Q Consensus 165 ~~~-~~~~~~g~~v 177 (178)
+.. ++..+.|++|
T Consensus 328 i~~lnG~~~~gr~i 341 (352)
T TIGR01661 328 ILSLNGYTLGNRVL 341 (352)
T ss_pred HHHhCCCEECCeEE
Confidence 997 8888888876
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=6.1e-30 Score=210.78 Aligned_cols=155 Identities=25% Similarity=0.519 Sum_probs=136.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCCc
Q psy2871 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRD 96 (178)
Q Consensus 18 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~~ 96 (178)
+|||+|||+++|+++|+++|+.||+|.+|++.++..+++++|||||+|.+.++|.+|++. ++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999999998899999999999999999999988 7788999999999975432
Q ss_pred ccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 97 EIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 97 ~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
.. ......+|||+||+. +++++|+++|+.||.|..+++..+. ++.++|||||+|.+.++|.+|+.. ++..+.|
T Consensus 82 ~~----~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~ 156 (562)
T TIGR01628 82 SL----RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLND 156 (562)
T ss_pred cc----cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecC
Confidence 21 112345799999999 9999999999999999999998875 577899999999999999999988 5556666
Q ss_pred ccc
Q psy2871 175 RRV 177 (178)
Q Consensus 175 ~~v 177 (178)
+.|
T Consensus 157 ~~i 159 (562)
T TIGR01628 157 KEV 159 (562)
T ss_pred ceE
Confidence 543
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=3.2e-28 Score=200.61 Aligned_cols=163 Identities=28% Similarity=0.518 Sum_probs=142.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec----CeEE
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID----GRVV 87 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~----g~~i 87 (178)
....++|||+|||+++|+++|+++|+.||.|.++.+..+. ++.++|||||.|.+.++|.+|++. ++..+. |+.+
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3456789999999999999999999999999999999986 788999999999999999999998 889998 9999
Q ss_pred EEeecCCCcccC------------CCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEE
Q psy2871 88 ETKRAVPRDEIG------------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIE 154 (178)
Q Consensus 88 ~v~~~~~~~~~~------------~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~ 154 (178)
.|.++..+.... .........+|||+||+. +++++|+++|+.||.|.++++..+ .++.++|+|||+
T Consensus 254 ~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~ 332 (562)
T TIGR01628 254 YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVC 332 (562)
T ss_pred EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEE
Confidence 998876654431 111133456899999999 999999999999999999999998 568999999999
Q ss_pred ECCHHHHHHHHHh-cCeecccccc
Q psy2871 155 FNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 155 F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
|.+.++|.+|+.. ++..+.|++|
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l 356 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPL 356 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCcee
Confidence 9999999999988 7777778765
No 9
>KOG0144|consensus
Probab=99.96 E-value=2.6e-29 Score=191.40 Aligned_cols=157 Identities=27% Similarity=0.490 Sum_probs=139.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc--CCceecC--eEEE
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDG--RVVE 88 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~--~~~~~~g--~~i~ 88 (178)
+.+.-.+||+-||+.++|.||+.+|++||.|.+|.+++|+.++.++|+|||.|++.++|.+|+.. +..++.| ++|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 35566899999999999999999999999999999999999999999999999999999999998 5677776 6889
Q ss_pred EeecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 89 TKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
|.+++.+.+.. ...++|||+-|+. ++|.+++++|++||.|+++.|+++.+ +.+||||||.|.+.+-|..|++.
T Consensus 111 vk~Ad~E~er~-----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 111 VKYADGERERI-----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred ecccchhhhcc-----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHh
Confidence 99888766543 3357899999999 99999999999999999999999974 89999999999999999999999
Q ss_pred cCe--ecccc
Q psy2871 168 KIT--LLLDR 175 (178)
Q Consensus 168 ~~~--~~~g~ 175 (178)
+++ ++.|.
T Consensus 185 ~ng~~tmeGc 194 (510)
T KOG0144|consen 185 LNGTQTMEGC 194 (510)
T ss_pred hccceeeccC
Confidence 443 44443
No 10
>KOG0145|consensus
Probab=99.96 E-value=9.8e-29 Score=177.83 Aligned_cols=153 Identities=25% Similarity=0.452 Sum_probs=141.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.++....|.|..||...|+++++.+|...|+|++|++++|+.+|.+.||+||.|-++++|.+|+.. ++..+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 355666799999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcC
Q psy2871 91 RAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKI 169 (178)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~ 169 (178)
.+.+.....+ ...|||++||. +|..+|.++|++||.|.-.+|+.++.++.++|.+||+|....+|..|+..+|
T Consensus 117 yARPSs~~Ik------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 117 YARPSSDSIK------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred eccCChhhhc------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc
Confidence 9988765433 34699999999 9999999999999999999999999999999999999999999999999844
Q ss_pred e
Q psy2871 170 T 170 (178)
Q Consensus 170 ~ 170 (178)
+
T Consensus 191 G 191 (360)
T KOG0145|consen 191 G 191 (360)
T ss_pred C
Confidence 3
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=7.7e-28 Score=196.34 Aligned_cols=160 Identities=19% Similarity=0.395 Sum_probs=131.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhc------------CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCC
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQW------------GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRP 79 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~------------G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 79 (178)
.....++|||+|||+++|+++|+++|+.+ +.|..+++. ..+|||||+|.+.++|..||..++
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhcCCC
Confidence 45567899999999999999999999975 344445443 356999999999999999998899
Q ss_pred ceecCeEEEEeecCCCcccC-----------------------CCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeE
Q psy2871 80 HNIDGRVVETKRAVPRDEIG-----------------------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES 135 (178)
Q Consensus 80 ~~~~g~~i~v~~~~~~~~~~-----------------------~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~ 135 (178)
..+.|+.|.|.......... ........++|||+|||. +++++|+++|+.||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 99999999997654322100 000123357899999999 999999999999999999
Q ss_pred EEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 136 VNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 136 ~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
+.++.+..++.++|||||+|.+.++|..|+.. ++..+.|++|
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l 367 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKL 367 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 99999988899999999999999999999987 6667777654
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=5.6e-27 Score=191.26 Aligned_cols=165 Identities=19% Similarity=0.340 Sum_probs=137.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
....++|||+|||..+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|++. ++..+.|+.|.|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999987 89999999999998
Q ss_pred cCCCcccCC----------------------CCCCCcccEEEEeCCCc---c--------cHHHHHHHhhccCceeEEEe
Q psy2871 92 AVPRDEIGK----------------------PEANATVKKMFVGGLKD---Q--------EEDDLREYFSQFGTIESVNM 138 (178)
Q Consensus 92 ~~~~~~~~~----------------------~~~~~~~~~l~v~~l~~---~--------t~~~l~~~f~~~G~v~~~~i 138 (178)
+........ .....+...|++.|+.. + ..++|++.|++||.|..+.|
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i 451 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVI 451 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEe
Confidence 754321110 00123457889998863 1 23689999999999999999
Q ss_pred eeCC---CCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 139 VTNK---ETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 139 ~~~~---~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
+.+. .++...|+|||+|++.++|.+|+.. ++..|.|+.|
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 8752 2345678999999999999999998 7778888765
No 13
>KOG0131|consensus
Probab=99.95 E-value=5e-28 Score=165.56 Aligned_cols=157 Identities=25% Similarity=0.463 Sum_probs=138.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
-+...+|||+||++.++++.|+++|-+.|+|.++++.+++.++..+||||++|.++++|..|++- +...+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 44567999999999999999999999999999999999999999999999999999999999998 88999999999998
Q ss_pred cCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeE-EEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcC
Q psy2871 92 AVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES-VNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKI 169 (178)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~-~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~ 169 (178)
+... +........|||+||.. +.+..|.+.|+.||.+.. -.+.++.+++.++|+|||.|.+.+++++|+.+++
T Consensus 86 as~~-----~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 86 ASAH-----QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred cccc-----cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 8722 22223347899999988 999999999999999644 5778888889999999999999999999999955
Q ss_pred eeccc
Q psy2871 170 TLLLD 174 (178)
Q Consensus 170 ~~~~g 174 (178)
+.+.+
T Consensus 161 gq~l~ 165 (203)
T KOG0131|consen 161 GQYLC 165 (203)
T ss_pred cchhc
Confidence 54443
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=8.8e-27 Score=188.52 Aligned_cols=150 Identities=12% Similarity=0.166 Sum_probs=126.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc---CCceecCeEEEEee
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRVVETKR 91 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~i~v~~ 91 (178)
++++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|..|+.. ++..+.|++|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4789999999999999999999999999999999864 48999999999999999985 67899999999999
Q ss_pred cCCCcccCCC------CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHH
Q psy2871 92 AVPRDEIGKP------EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164 (178)
Q Consensus 92 ~~~~~~~~~~------~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a 164 (178)
+......... ........|+|.||+. +++++|+++|+.||.|..+.+.++.. +++|||+|.+.++|.+|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHA 150 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHH
Confidence 8654322111 1112334789999998 99999999999999999999987643 35899999999999999
Q ss_pred HHh-cCeeccc
Q psy2871 165 VLS-KITLLLD 174 (178)
Q Consensus 165 ~~~-~~~~~~g 174 (178)
++. ++..+.|
T Consensus 151 ~~~Lng~~i~~ 161 (481)
T TIGR01649 151 KAALNGADIYN 161 (481)
T ss_pred HHHhcCCcccC
Confidence 987 6666654
No 15
>KOG0117|consensus
Probab=99.95 E-value=3.3e-27 Score=180.63 Aligned_cols=158 Identities=23% Similarity=0.409 Sum_probs=139.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEeeCCCC-CCccceEEEEeCCHHHHHHHHhc---CCceecCeE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKDPIT-KRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRV 86 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~ 86 (178)
....+++|||+|||+.+++++|.+.+++.++ |.+|.+.....+ .+++|||||+|.++.+|..|.++ ....+.|..
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 4556789999999999999999999999866 677777766643 57999999999999999999987 467889999
Q ss_pred EEEeecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHH
Q psy2871 87 VETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (178)
Q Consensus 87 i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~ 165 (178)
+.|.|+.+......+ .......|||+||+. +|+|.|+.+|++||.|..++.++| ||||.|.+.++|-+|+
T Consensus 240 ~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAM 310 (506)
T ss_pred ceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHH
Confidence 999999998876555 666778999999999 999999999999999999998866 8999999999999999
Q ss_pred Hh-cCeeccccccC
Q psy2871 166 LS-KITLLLDRRVE 178 (178)
Q Consensus 166 ~~-~~~~~~g~~ve 178 (178)
+. ++..++|..||
T Consensus 311 ~~~ngkeldG~~iE 324 (506)
T KOG0117|consen 311 KETNGKELDGSPIE 324 (506)
T ss_pred HHhcCceecCceEE
Confidence 99 88889998876
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=3.4e-26 Score=185.10 Aligned_cols=156 Identities=12% Similarity=0.244 Sum_probs=129.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 13 PESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 13 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
...+++|||+|||+ .+|+++|+++|+.||.|.+++++.++ +|+|||+|.+.++|..|+.. ++..+.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998863 58999999999999999987 8999999999999
Q ss_pred ecCCCcccCCC-------------------------------CCCCcccEEEEeCCCc-ccHHHHHHHhhccCc--eeEE
Q psy2871 91 RAVPRDEIGKP-------------------------------EANATVKKMFVGGLKD-QEEDDLREYFSQFGT--IESV 136 (178)
Q Consensus 91 ~~~~~~~~~~~-------------------------------~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~--v~~~ 136 (178)
++......... ....++.+|||+|||. +++++|+++|+.||. |..+
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 87543210000 0013457899999999 999999999999998 8888
Q ss_pred EeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccc
Q psy2871 137 NMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDR 175 (178)
Q Consensus 137 ~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~ 175 (178)
++..... .++++|||+|++.++|..|+.. ++..+.|+
T Consensus 427 k~~~~~~--~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~ 464 (481)
T TIGR01649 427 KFFPKDN--ERSKMGLLEWESVEDAVEALIALNHHQLNEP 464 (481)
T ss_pred EEecCCC--CcceeEEEEcCCHHHHHHHHHHhcCCccCCC
Confidence 8865442 3578999999999999999998 55566654
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.3e-26 Score=188.03 Aligned_cols=157 Identities=25% Similarity=0.416 Sum_probs=125.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec-CeEEEEe
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVETK 90 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~i~v~ 90 (178)
+....+|||+|||+++++++|+++|++||+|.+++++.+ .++.++|||||+|.+.++|++|++. ++..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 5899999999999999999999997 655553 4444333
Q ss_pred ecCCCc---------------------------------------cc---------------------------------
Q psy2871 91 RAVPRD---------------------------------------EI--------------------------------- 98 (178)
Q Consensus 91 ~~~~~~---------------------------------------~~--------------------------------- 98 (178)
++.... ..
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 221000 00
Q ss_pred -----------CCCCCCCcccEEEEeCCCc-ccHHHHHHHhhcc--CceeEEEeeeCCCCCCceeEEEEEECCHHHHHHH
Q psy2871 99 -----------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQF--GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164 (178)
Q Consensus 99 -----------~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~--G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a 164 (178)
.........++|||+||+. +++++|+++|+.| |.|+.+.+.+ +||||+|++.++|.+|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHH
Confidence 0000012246799999999 9999999999999 9999988753 4899999999999999
Q ss_pred HHh-cCeeccccccC
Q psy2871 165 VLS-KITLLLDRRVE 178 (178)
Q Consensus 165 ~~~-~~~~~~g~~ve 178 (178)
++. ++..|.|++|+
T Consensus 286 i~~lnG~~i~Gr~I~ 300 (578)
T TIGR01648 286 MDELNGKELEGSEIE 300 (578)
T ss_pred HHHhCCCEECCEEEE
Confidence 987 77888888764
No 18
>KOG0127|consensus
Probab=99.94 E-value=6.4e-26 Score=177.40 Aligned_cols=160 Identities=24% Similarity=0.441 Sum_probs=142.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCC
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~ 95 (178)
-+|||++||++++.++|.++|+.+|+|..+.++.++..+.++||+||.|.-.++++.|+.. .+..+.|+.|+|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 7999999999999999999999999999999999998899999999999999999999999 788999999999988766
Q ss_pred cccCCC--------------------CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEE
Q psy2871 96 DEIGKP--------------------EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIE 154 (178)
Q Consensus 96 ~~~~~~--------------------~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~ 154 (178)
...... ....+.-.|.|+|||+ +...+|+.+|+.||.|..+.|++..+.+ -+|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk-lcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK-LCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC-ccceEEEE
Confidence 543310 0112356899999999 9999999999999999999999777644 45999999
Q ss_pred ECCHHHHHHHHHh-cCeecccccc
Q psy2871 155 FNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 155 F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
|....+|..|++. +++.|.|++|
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~V 188 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPV 188 (678)
T ss_pred EeeHHHHHHHHHhccCceecCcee
Confidence 9999999999999 8889999886
No 19
>KOG0127|consensus
Probab=99.94 E-value=1.5e-25 Score=175.26 Aligned_cols=151 Identities=28% Similarity=0.510 Sum_probs=133.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCC
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~ 94 (178)
.-+|.|+|||+.+.+.+|+.+|+.||.|..|.|.+...++.+ |||||.|....+|..||+. ++..|.|++|.|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 568999999999999999999999999999999987755555 9999999999999999999 99999999999999866
Q ss_pred CcccCC-----------------------------------------C------------------------CC-C----
Q psy2871 95 RDEIGK-----------------------------------------P------------------------EA-N---- 104 (178)
Q Consensus 95 ~~~~~~-----------------------------------------~------------------------~~-~---- 104 (178)
+..... + .. +
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 532100 0 00 0
Q ss_pred --------------CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 105 --------------ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 105 --------------~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
.-..+|||+|||. +|+++|...|++||+|.+..++.++.++.++|.|||.|.+..+|..||+.
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHh
Confidence 0126899999999 99999999999999999999999999999999999999999999999987
No 20
>KOG4205|consensus
Probab=99.94 E-value=2.3e-26 Score=173.59 Aligned_cols=164 Identities=46% Similarity=0.817 Sum_probs=156.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 94 (178)
+...|||++|+++++++.|++.|++||+|.++.+++++.+++++||+||.|.+.++..++|....+.++|+.|.+..+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 78899999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecc
Q psy2871 95 RDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLL 173 (178)
Q Consensus 95 ~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~ 173 (178)
..............++||+++|. +++++++++|.+||.|..+.+..+..+..++|++||.|.+.+++++++...-+.|+
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~ 164 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFN 164 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeec
Confidence 88877766666788999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q psy2871 174 DRRVE 178 (178)
Q Consensus 174 g~~ve 178 (178)
|+.||
T Consensus 165 gk~ve 169 (311)
T KOG4205|consen 165 GKKVE 169 (311)
T ss_pred Cceee
Confidence 99886
No 21
>KOG0117|consensus
Probab=99.93 E-value=2.3e-24 Score=165.13 Aligned_cols=142 Identities=20% Similarity=0.451 Sum_probs=125.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCcee-cCeEEEEee
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI-DGRVVETKR 91 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~-~g~~i~v~~ 91 (178)
.....|||+.||.++.|++|.-+|++.|+|-+++|+.|+.+|.++|||||.|.+.+.|+.|++. ++..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4566899999999999999999999999999999999999999999999999999999999998 65555 688888876
Q ss_pred cCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCc-eeEEEeeeC-CCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 92 AVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMVTN-KETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~-v~~~~i~~~-~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
+.. +++|||+|+|. +++++|++.+++.++ |+.+.+... .+...+||||||+|+++.+|..|-.+
T Consensus 161 Sva------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 161 SVA------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred eee------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhh
Confidence 543 35699999999 999999999999987 677666655 44688899999999999999998876
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=8.1e-24 Score=170.70 Aligned_cols=159 Identities=23% Similarity=0.453 Sum_probs=131.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
..++|||+|||+.+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|..|++. ++..+.|+.|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 368999999999999999999999999999999999998889999999999999999999987 8999999999999953
Q ss_pred CCccc-----------------------------------C---------C-----------------------------
Q psy2871 94 PRDEI-----------------------------------G---------K----------------------------- 100 (178)
Q Consensus 94 ~~~~~-----------------------------------~---------~----------------------------- 100 (178)
..... . .
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 21000 0 0
Q ss_pred -----------CCCCCcccEEEEeCCCc-cc----------HHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCH
Q psy2871 101 -----------PEANATVKKMFVGGLKD-QE----------EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 158 (178)
Q Consensus 101 -----------~~~~~~~~~l~v~~l~~-~t----------~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~ 158 (178)
.....+.+.|+|.|+.. .+ .++|++.|++||.|..+.+... ...|++||+|.+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~ 420 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSV 420 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCH
Confidence 00112346788888854 33 3689999999999999998643 4568999999999
Q ss_pred HHHHHHHHh-cCeecccccc
Q psy2871 159 DVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 159 ~~a~~a~~~-~~~~~~g~~v 177 (178)
++|..|+.. ++..|+|+.|
T Consensus 421 e~A~~A~~~lnGr~f~gr~i 440 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMI 440 (457)
T ss_pred HHHHHHHHHhcCcccCCeEE
Confidence 999999999 7777778766
No 23
>KOG0124|consensus
Probab=99.92 E-value=2.9e-25 Score=166.74 Aligned_cols=159 Identities=19% Similarity=0.443 Sum_probs=138.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCC
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~ 95 (178)
.+|||+.|+..+.|+.|+..|.+||+|.+|.+.-|+-++..+|||||+|.-+|.|+.|++. |+..+.|+.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999998 999999999999865432
Q ss_pred cccCC-----CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcC
Q psy2871 96 DEIGK-----PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKI 169 (178)
Q Consensus 96 ~~~~~-----~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~ 169 (178)
..... +.......++||..+-. ++++||+..|+.||+|.++.+.+..+...++||+|++|.+..+-..|+..+|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 22111 11223457899999965 9999999999999999999999999999999999999999999999999855
Q ss_pred e-ecccc
Q psy2871 170 T-LLLDR 175 (178)
Q Consensus 170 ~-~~~g~ 175 (178)
. .+.|+
T Consensus 274 lFDLGGQ 280 (544)
T KOG0124|consen 274 LFDLGGQ 280 (544)
T ss_pred hhhcccc
Confidence 4 34443
No 24
>KOG0123|consensus
Probab=99.92 E-value=8.5e-24 Score=164.57 Aligned_cols=140 Identities=21% Similarity=0.472 Sum_probs=127.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCCc
Q psy2871 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRD 96 (178)
Q Consensus 18 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~~ 96 (178)
.|||+ +++|+..|.+.|+++|++.++++.++. + +-|||||.|.+.++|.+||+. +...+.|++|++.|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58898 999999999999999999999999998 6 999999999999999999999 8889999999999987555
Q ss_pred ccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 97 EIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 97 ~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
.. +||.||+. ++...|.+.|+.||+|.++++..+.+ | ++|| ||+|+++++|.+|+.. +|..++|
T Consensus 77 ~~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~ 142 (369)
T KOG0123|consen 77 SL-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNG 142 (369)
T ss_pred ce-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCC
Confidence 43 99999998 99999999999999999999999874 3 8999 9999999999999999 5556666
Q ss_pred ccc
Q psy2871 175 RRV 177 (178)
Q Consensus 175 ~~v 177 (178)
++|
T Consensus 143 kki 145 (369)
T KOG0123|consen 143 KKI 145 (369)
T ss_pred Cee
Confidence 654
No 25
>KOG0109|consensus
Probab=99.91 E-value=5.7e-24 Score=155.26 Aligned_cols=136 Identities=23% Similarity=0.537 Sum_probs=126.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCCc
Q psy2871 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRD 96 (178)
Q Consensus 18 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~~ 96 (178)
.|||+|||..+++.+|+.+|++||+|..|.|+.+ ||||-.++...+..|++. ++..|+|..|+|+.++.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc-
Confidence 6899999999999999999999999999999975 999999999999999997 999999999999988765
Q ss_pred ccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 97 EIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 97 ~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
+..+++|+|+|+.. ++.++|+..|++||+|..+.|+++ |+||.|.-.++|..|+.. +|..|+|
T Consensus 75 -------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~g 139 (346)
T KOG0109|consen 75 -------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQG 139 (346)
T ss_pred -------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccccc
Confidence 35567899999988 999999999999999999999876 899999999999999977 8889999
Q ss_pred ccc
Q psy2871 175 RRV 177 (178)
Q Consensus 175 ~~v 177 (178)
+++
T Consensus 140 k~m 142 (346)
T KOG0109|consen 140 KRM 142 (346)
T ss_pred cee
Confidence 875
No 26
>KOG0145|consensus
Probab=99.90 E-value=8.4e-23 Score=147.35 Aligned_cols=164 Identities=23% Similarity=0.396 Sum_probs=137.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecC--eEEE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVE 88 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~i~ 88 (178)
+....-.|||.+||+..|..+|+++|++||.|...++..|..+|.++|.+||.|....+|..|++. ++..-.| .+|.
T Consensus 123 ~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepIt 202 (360)
T KOG0145|consen 123 DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPIT 202 (360)
T ss_pred hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeE
Confidence 444566899999999999999999999999999999999999999999999999999999999998 7776666 4788
Q ss_pred EeecCCCcccCC---------------------------------------------------------CCCCCcccEEE
Q psy2871 89 TKRAVPRDEIGK---------------------------------------------------------PEANATVKKMF 111 (178)
Q Consensus 89 v~~~~~~~~~~~---------------------------------------------------------~~~~~~~~~l~ 111 (178)
|.++........ .......-+||
T Consensus 203 VKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciF 282 (360)
T KOG0145|consen 203 VKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIF 282 (360)
T ss_pred EEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEE
Confidence 887754322100 00011245899
Q ss_pred EeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccc
Q psy2871 112 VGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDR 175 (178)
Q Consensus 112 v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~ 175 (178)
|-||.. ..|.-|+++|..||.|.++++.+|.++...+||+||...+.++|..|+.++|+.-.|.
T Consensus 283 vYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~ 347 (360)
T KOG0145|consen 283 VYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 347 (360)
T ss_pred EEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc
Confidence 999987 8889999999999999999999999999999999999999999999999955544443
No 27
>KOG0110|consensus
Probab=99.89 E-value=2.1e-22 Score=161.89 Aligned_cols=159 Identities=25% Similarity=0.440 Sum_probs=136.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCC---CccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCC
Q psy2871 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK---RSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (178)
Q Consensus 19 l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~---~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~ 94 (178)
|||+||+.+++.+++...|...|.|.++.|...+... .+.|||||+|.+.++|+.|++. ++..++|+.|.|..+..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 9999999999999999999999999999887765332 3669999999999999999999 78999999999998872
Q ss_pred CcccC---CCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cC
Q psy2871 95 RDEIG---KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KI 169 (178)
Q Consensus 95 ~~~~~---~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~ 169 (178)
.+... ........++|+|+|+|. .+..+++.+|..||.+..++++.....+.++|+|||+|-++.+|.+|+.+ ..
T Consensus 598 k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~S 677 (725)
T KOG0110|consen 598 KPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGS 677 (725)
T ss_pred ccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcc
Confidence 22211 111223367999999999 99999999999999999999998866778899999999999999999988 67
Q ss_pred eecccccc
Q psy2871 170 TLLLDRRV 177 (178)
Q Consensus 170 ~~~~g~~v 177 (178)
..+.|+++
T Consensus 678 THlyGRrL 685 (725)
T KOG0110|consen 678 THLYGRRL 685 (725)
T ss_pred cceechhh
Confidence 78888874
No 28
>KOG0123|consensus
Probab=99.87 E-value=3.6e-21 Score=149.95 Aligned_cols=151 Identities=23% Similarity=0.480 Sum_probs=134.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCCcc
Q psy2871 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRDE 97 (178)
Q Consensus 19 l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~~~ 97 (178)
|||+||+++++...|++.|+.||+|.+|++..+. +| ++|| ||.|.+.+.|++|++. ++..+.|+.|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999998 44 9999 9999999999999999 99999999999998887776
Q ss_pred cCCCCCC--CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecc
Q psy2871 98 IGKPEAN--ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLL 173 (178)
Q Consensus 98 ~~~~~~~--~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~ 173 (178)
....... .....+++.+.+. .+++.|..+|..+|.|..+.+..+.. +.++||+||.|++.++|..|+...+....
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~~ 233 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKIF 233 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCcC
Confidence 5543333 4456789999998 99999999999999999999998865 55899999999999999999999555444
No 29
>KOG0146|consensus
Probab=99.86 E-value=4.1e-21 Score=139.13 Aligned_cols=160 Identities=19% Similarity=0.393 Sum_probs=136.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-C-CceecC--eEEEEe
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R-PHNIDG--RVVETK 90 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~-~~~~~g--~~i~v~ 90 (178)
+.|.|||+.|.+.-.|+|++.+|.+||.|++|.+.+.. +|.++|.|||.|.+..+|+.|+.. + ..++.| ..|-|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67899999999999999999999999999999999977 888999999999999999999998 3 355555 568888
Q ss_pred ecCCCcccC-----------------------------------------------------------------------
Q psy2871 91 RAVPRDEIG----------------------------------------------------------------------- 99 (178)
Q Consensus 91 ~~~~~~~~~----------------------------------------------------------------------- 99 (178)
+++...+..
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 887764310
Q ss_pred ------C-------------------------------------------------------------------------
Q psy2871 100 ------K------------------------------------------------------------------------- 100 (178)
Q Consensus 100 ------~------------------------------------------------------------------------- 100 (178)
.
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0
Q ss_pred ----------------------CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECC
Q psy2871 101 ----------------------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 157 (178)
Q Consensus 101 ----------------------~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~ 157 (178)
+...+....|||-.||. ..+.+|.+.|-.||.|.+.+++.|+-++.+++|+||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00001246899999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeecccc
Q psy2871 158 YDVVDKIVLSKITLLLDR 175 (178)
Q Consensus 158 ~~~a~~a~~~~~~~~~g~ 175 (178)
..+|+.||..+|+.-.|.
T Consensus 337 p~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGM 354 (371)
T ss_pred chhHHHHHHHhcchhhhh
Confidence 999999999977665553
No 30
>KOG0148|consensus
Probab=99.86 E-value=2.2e-21 Score=140.53 Aligned_cols=130 Identities=22% Similarity=0.456 Sum_probs=110.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 91 (178)
+++..|+|||+||++.+||+=|..+|++.|.+.+++++.+ .++|.|
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~w 47 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNW 47 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccc
Confidence 4567899999999999999999999999999999999876 356666
Q ss_pred cCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCe
Q psy2871 92 AVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKIT 170 (178)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~ 170 (178)
+.... ..+.........+||+.|.. ++.|+|++.|-+||+|.+.++++|..++.++||+||.|-+.++|..|+..+|+
T Consensus 48 a~~p~-nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnG 126 (321)
T KOG0148|consen 48 ATAPG-NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNG 126 (321)
T ss_pred ccCcc-cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCC
Confidence 65442 22222222345789999988 99999999999999999999999999999999999999999999999999888
Q ss_pred eccccc
Q psy2871 171 LLLDRR 176 (178)
Q Consensus 171 ~~~g~~ 176 (178)
.+.|+|
T Consensus 127 qWlG~R 132 (321)
T KOG0148|consen 127 QWLGRR 132 (321)
T ss_pred eeeccc
Confidence 887765
No 31
>KOG0144|consensus
Probab=99.86 E-value=4.8e-21 Score=146.55 Aligned_cols=90 Identities=26% Similarity=0.489 Sum_probs=78.0
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-C-CceecC
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R-PHNIDG 84 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~-~~~~~g 84 (178)
+.+...-.+.+.|||+.|++.+||.+++++|++||.|++|+|+++. .+.+||+|||.|.+.+.|..|++. + ..++.|
T Consensus 115 d~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 115 DGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred chhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 3333344567899999999999999999999999999999999998 889999999999999999999998 3 466666
Q ss_pred --eEEEEeecCCCcc
Q psy2871 85 --RVVETKRAVPRDE 97 (178)
Q Consensus 85 --~~i~v~~~~~~~~ 97 (178)
.+|.|.|++++..
T Consensus 194 cs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 194 CSQPLVVKFADTQKD 208 (510)
T ss_pred CCCceEEEecccCCC
Confidence 5899999988754
No 32
>KOG0147|consensus
Probab=99.86 E-value=1e-21 Score=154.13 Aligned_cols=168 Identities=26% Similarity=0.420 Sum_probs=144.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v 89 (178)
..++...|++|.--|+..+++.+|+++|+.+|+|.+++++.|..+++++|.|||+|.+.++...|+...|..+.|.+|.|
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 34556678899999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred eecCCCccc--------CCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHH
Q psy2871 90 KRAVPRDEI--------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 160 (178)
Q Consensus 90 ~~~~~~~~~--------~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~ 160 (178)
+.+...... .......+...|+|+||-. +++++|+..|+.||.|..+.+..+..+|.++||+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 865333221 1112233455599999999 9999999999999999999999998899999999999999999
Q ss_pred HHHHHHh-cCeecccccc
Q psy2871 161 VDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 161 a~~a~~~-~~~~~~g~~v 177 (178)
|.+|++. ++..+-|+.|
T Consensus 333 ar~a~e~lngfelAGr~i 350 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLI 350 (549)
T ss_pred HHHHHHHhccceecCceE
Confidence 9999988 5555667654
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=1.4e-19 Score=147.60 Aligned_cols=81 Identities=19% Similarity=0.554 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
...++|||+|||+++++++|+++|+.||.|.++++.+++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 3467999999999999999999999999999999999998899999999999999999999998 999999999999876
Q ss_pred CC
Q psy2871 93 VP 94 (178)
Q Consensus 93 ~~ 94 (178)
.+
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 54
No 34
>KOG4211|consensus
Probab=99.85 E-value=4.2e-20 Score=143.49 Aligned_cols=163 Identities=18% Similarity=0.315 Sum_probs=133.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 91 (178)
+.....-|.+++||+++|++||+++|+.+ .|+++.+.+. +|+..|-|||+|.+.+++++|++++...+..+.|.|..
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 55567789999999999999999999998 4788666654 78999999999999999999999998888899999998
Q ss_pred cCCCcccC-----CCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeE-EEeeeCCCCCCceeEEEEEECCHHHHHHH
Q psy2871 92 AVPRDEIG-----KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES-VNMVTNKETGAKRGFAFIEFNDYDVVDKI 164 (178)
Q Consensus 92 ~~~~~~~~-----~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~-~~i~~~~~~~~~~g~afv~F~~~~~a~~a 164 (178)
+...+..- ......+...|.+++||. +|++||.++|+..-.|.. |.++.++ .+.+.|-|||+|++.++|++|
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHH
Confidence 76554321 111224667899999999 999999999998866666 3344443 567899999999999999999
Q ss_pred HHhcCeeccccccC
Q psy2871 165 VLSKITLLLDRRVE 178 (178)
Q Consensus 165 ~~~~~~~~~g~~ve 178 (178)
+..+...+.-+.||
T Consensus 162 l~rhre~iGhRYIE 175 (510)
T KOG4211|consen 162 LGRHRENIGHRYIE 175 (510)
T ss_pred HHHHHHhhccceEE
Confidence 99988888777665
No 35
>KOG0105|consensus
Probab=99.85 E-value=1.2e-19 Score=125.03 Aligned_cols=145 Identities=15% Similarity=0.327 Sum_probs=123.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
...+++|||+|||+++.+.+|+++|-+||.|.+|.+.... ....||||+|.++.+|..|+.- ++..++|+.|+|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 4568899999999999999999999999999999986543 3468999999999999999998 99999999999999
Q ss_pred cCCCcccCC--------------------CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeE
Q psy2871 92 AVPRDEIGK--------------------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGF 150 (178)
Q Consensus 92 ~~~~~~~~~--------------------~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~ 150 (178)
+........ .........+.|.+||. -+.++|+++..+-|.|+...+.++. +
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~ 152 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------V 152 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------c
Confidence 876542211 11112346799999999 9999999999999999999987774 6
Q ss_pred EEEEECCHHHHHHHHHh
Q psy2871 151 AFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 151 afv~F~~~~~a~~a~~~ 167 (178)
+.|+|-..|+-+-|+..
T Consensus 153 GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRK 169 (241)
T ss_pred eeeeeeehhhHHHHHHh
Confidence 88999999999999877
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=1.1e-18 Score=119.59 Aligned_cols=84 Identities=36% Similarity=0.628 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
..+++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|+.|++. ++..+.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3467899999999999999999999999999999999999999999999999999999999986 899999999999998
Q ss_pred CCCcc
Q psy2871 93 VPRDE 97 (178)
Q Consensus 93 ~~~~~ 97 (178)
.....
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76544
No 37
>KOG4206|consensus
Probab=99.79 E-value=8.6e-18 Score=119.39 Aligned_cols=146 Identities=20% Similarity=0.413 Sum_probs=122.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQA----FFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~----~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
..+.+|||.||+..+..++|+. +|++||.|.+|.... +.+.+|-|||.|++.+.|..|++. +|..+.|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999988 999999999998775 668899999999999999999999 89999999999
Q ss_pred EeecCCCcccCC--------------------------------------------CCCCCcccEEEEeCCCc-ccHHHH
Q psy2871 89 TKRAVPRDEIGK--------------------------------------------PEANATVKKMFVGGLKD-QEEDDL 123 (178)
Q Consensus 89 v~~~~~~~~~~~--------------------------------------------~~~~~~~~~l~v~~l~~-~t~~~l 123 (178)
+.++..+..... ....++...||+.++|. .+.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 998765532111 11134567899999999 999999
Q ss_pred HHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 124 REYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 124 ~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
..+|++|.....++..... ++.|||+|.+...|..|...
T Consensus 164 ~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred HHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhh
Confidence 9999999999999987643 24799999999988887766
No 38
>KOG0147|consensus
Probab=99.75 E-value=1e-17 Score=131.81 Aligned_cols=156 Identities=21% Similarity=0.423 Sum_probs=119.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCC
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~ 94 (178)
-++|||+||..++++++|+..|++||.|..|.+..+..+|+++||+||+|.+.++|.+|++. ++..+-|+.|+|..-..
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 33499999999999999999999999999999999999999999999999999999999888 89999999999864322
Q ss_pred CcccC------------------------------------------------------------------CCCCC----
Q psy2871 95 RDEIG------------------------------------------------------------------KPEAN---- 104 (178)
Q Consensus 95 ~~~~~------------------------------------------------------------------~~~~~---- 104 (178)
..... .....
T Consensus 358 r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p 437 (549)
T KOG0147|consen 358 RVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASP 437 (549)
T ss_pred ecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccc
Confidence 11100 00000
Q ss_pred ---CcccEEEEeCCC--c-cc--------HHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCe
Q psy2871 105 ---ATVKKMFVGGLK--D-QE--------EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKIT 170 (178)
Q Consensus 105 ---~~~~~l~v~~l~--~-~t--------~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~ 170 (178)
.+..++.+.|+= . .| .+++.+.+++||+|..|.+.... -|+.||+|.+.++|..|+..+++
T Consensus 438 ~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns-----~g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 438 AFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS-----AGCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred ccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC-----CceEEEecCcHHHHHHHHHHHhh
Confidence 122334444442 1 12 27889999999999998885432 27899999999999999999555
Q ss_pred eccccc
Q psy2871 171 LLLDRR 176 (178)
Q Consensus 171 ~~~g~~ 176 (178)
.+.+++
T Consensus 513 rWF~gr 518 (549)
T KOG0147|consen 513 RWFAGR 518 (549)
T ss_pred hhhccc
Confidence 555443
No 39
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=3.9e-17 Score=98.45 Aligned_cols=69 Identities=28% Similarity=0.663 Sum_probs=65.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 19 l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
|||+|||+++++++|+++|++||.|..+++..+ .++..+|+|||.|.+.++|..|++. ++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5888999999999999999999996 99999999885
No 40
>KOG1457|consensus
Probab=99.73 E-value=1.3e-16 Score=113.09 Aligned_cols=153 Identities=16% Similarity=0.315 Sum_probs=117.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeC-CCCCCccceEEEEeCCHHHHHHHHhc-CCceec---CeE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKD-PITKRSRGFGFITYSEAKMVDDAMSN-RPHNID---GRV 86 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~~ 86 (178)
+....|+|||.+||.++...+|+.+|..|-..+.+.+... +.....+.+||+.|.+.+.|.+|+.+ +|..++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3445899999999999999999999999877777666443 33346778999999999999999999 888875 567
Q ss_pred EEEeecCCCcccCC------------------------------------------------------------------
Q psy2871 87 VETKRAVPRDEIGK------------------------------------------------------------------ 100 (178)
Q Consensus 87 i~v~~~~~~~~~~~------------------------------------------------------------------ 100 (178)
|++..+........
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 88876543221100
Q ss_pred ------------C--CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHH
Q psy2871 101 ------------P--EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (178)
Q Consensus 101 ------------~--~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~ 165 (178)
+ .......+|||.||.. ++|++|+.+|++|......+|.... |. ..||++|++.+.|..|+
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~--g~--~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG--GM--PVAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC--Cc--ceEeecHHHHHHHHHHH
Confidence 0 0001245899999988 9999999999999887777775442 22 37999999999999999
Q ss_pred Hhc
Q psy2871 166 LSK 168 (178)
Q Consensus 166 ~~~ 168 (178)
..+
T Consensus 266 ~~l 268 (284)
T KOG1457|consen 266 NHL 268 (284)
T ss_pred HHh
Confidence 873
No 41
>KOG0122|consensus
Probab=99.71 E-value=1.2e-16 Score=114.62 Aligned_cols=83 Identities=20% Similarity=0.386 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
-++..+|.|.|||.++++++|+++|.+||.|..+.+.+|+.+|.++|||||.|.+.++|++|+.. +|.-++.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred cCCC
Q psy2871 92 AVPR 95 (178)
Q Consensus 92 ~~~~ 95 (178)
+.|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 42
>KOG0129|consensus
Probab=99.70 E-value=9.7e-16 Score=120.14 Aligned_cols=166 Identities=20% Similarity=0.340 Sum_probs=124.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCC--Cccc---eEEEEeCCHHHHHHHHhcCCce
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK--RSRG---FGFITYSEAKMVDDAMSNRPHN 81 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g---~afV~f~~~~~a~~a~~~~~~~ 81 (178)
........-++.|||++||++++|++|...|..||.+..-|-.+....+ ..+| |+|+.|+++.+++..+..-...
T Consensus 250 ~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~ 329 (520)
T KOG0129|consen 250 PRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG 329 (520)
T ss_pred CCCCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc
Confidence 3445566778999999999999999999999999998766654322222 3556 9999999999999888762121
Q ss_pred ecCeEEEEeecCCCcc---------------cCCCCCCCcccEEEEeCCCc-ccHHHHHHHhh-ccCceeEEEeeeCCCC
Q psy2871 82 IDGRVVETKRAVPRDE---------------IGKPEANATVKKMFVGGLKD-QEEDDLREYFS-QFGTIESVNMVTNKET 144 (178)
Q Consensus 82 ~~g~~i~v~~~~~~~~---------------~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~-~~G~v~~~~i~~~~~~ 144 (178)
-.+..+.|.....+.. ......-.+.+++||++||. ++.++|..+|+ -||.|.++-|-.|+.-
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 1222232222211111 11222335678999999999 99999999999 6999999999999777
Q ss_pred CCceeEEEEEECCHHHHHHHHHhcCeec
Q psy2871 145 GAKRGFAFIEFNDYDVVDKIVLSKITLL 172 (178)
Q Consensus 145 ~~~~g~afv~F~~~~~a~~a~~~~~~~~ 172 (178)
+.++|-|-|.|.+..+-.+||++.-..|
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsarFvql 437 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISARFVQL 437 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhhheEEE
Confidence 8999999999999999999998843333
No 43
>KOG0106|consensus
Probab=99.69 E-value=6.3e-17 Score=115.88 Aligned_cols=145 Identities=26% Similarity=0.492 Sum_probs=120.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCC
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~ 95 (178)
..+||++||+.+.+.+|..+|..||.+.++.+.. ||+||.|.+..+|..|+.. ++..+.|..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3689999999999999999999999999998765 7999999999999999998 888898888888888742
Q ss_pred c------ccC--------CCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHH
Q psy2871 96 D------EIG--------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 160 (178)
Q Consensus 96 ~------~~~--------~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~ 160 (178)
. ... ......+...+.+.+++. +..++|.+.|+.+|.+....+ ..+.+||+|+..++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 1 111 111234456788999988 999999999999999955544 23379999999999
Q ss_pred HHHHHHh-cCeecccccc
Q psy2871 161 VDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 161 a~~a~~~-~~~~~~g~~v 177 (178)
|..|++. ++..+.|+.+
T Consensus 146 a~ra~~~l~~~~~~~~~l 163 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRI 163 (216)
T ss_pred hhhcchhccchhhcCcee
Confidence 9999999 7778888765
No 44
>KOG1548|consensus
Probab=99.69 E-value=2.2e-15 Score=112.89 Aligned_cols=160 Identities=17% Similarity=0.305 Sum_probs=126.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCcee--------EEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--------DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (178)
+.-+..|||.|||.++|-+++.++|+.+|.|. .|++.++. .|..+|-|++.|.-.+++..|++. ++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34456699999999999999999999998875 47888887 589999999999999999999999 889999
Q ss_pred CeEEEEeecCCCccc--------------------------------CCCCCCCcccEEEEeCCCc---c--c-------
Q psy2871 84 GRVVETKRAVPRDEI--------------------------------GKPEANATVKKMFVGGLKD---Q--E------- 119 (178)
Q Consensus 84 g~~i~v~~~~~~~~~--------------------------------~~~~~~~~~~~l~v~~l~~---~--t------- 119 (178)
|+.|+|+.+...... .........++|.+.|+-. + +
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 999999977443110 0011122356788888732 1 1
Q ss_pred HHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 120 EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 120 ~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.++|++-.++||.|.++.+.-. .+.|.+.|.|.+.++|+.|+.. ++..|.|++|
T Consensus 290 kedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql 344 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQL 344 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEE
Confidence 3678888999999999988643 5567899999999999999999 7777777765
No 45
>KOG0149|consensus
Probab=99.69 E-value=1.2e-16 Score=114.09 Aligned_cols=83 Identities=39% Similarity=0.691 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 91 (178)
.+.....|||+||++.+..++|++.|++||+|.+..++.|+.+++++||+||.|.+.++|.+|++....+|+||.-.+..
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 44456789999999999999999999999999999999999999999999999999999999999988999999888776
Q ss_pred cCC
Q psy2871 92 AVP 94 (178)
Q Consensus 92 ~~~ 94 (178)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 543
No 46
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.69 E-value=2.5e-15 Score=112.73 Aligned_cols=150 Identities=23% Similarity=0.461 Sum_probs=117.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCC
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~ 94 (178)
.++|||+|||+++++++|.++|..||.+..+.+..++.++.++|||||.|.+.++|..|++. ++..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988999999999999999999999999 77999999999999542
Q ss_pred ----CcccCC--------------CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEE
Q psy2871 95 ----RDEIGK--------------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 155 (178)
Q Consensus 95 ----~~~~~~--------------~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F 155 (178)
...... .........+++.+++. ++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 222110 11123456889999999 99999999999999997776665544333333333444
Q ss_pred CCHHHHHHHH
Q psy2871 156 NDYDVVDKIV 165 (178)
Q Consensus 156 ~~~~~a~~a~ 165 (178)
.....+....
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 4444443333
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=3.7e-16 Score=107.13 Aligned_cols=73 Identities=30% Similarity=0.609 Sum_probs=67.7
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|++.++|+.|++. ++..+.|++|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4567899999999 99999999999999999999999998999999999999999999999987 7788888775
No 48
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.68 E-value=4.6e-16 Score=93.99 Aligned_cols=69 Identities=33% Similarity=0.602 Sum_probs=63.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 19 l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
|||+|||+++++++|+++|+.+|.|..+.+..++. +..+|+|||+|.+.++|..|++. ++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 89999999999999999999999 66999999874
No 49
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=1.2e-15 Score=112.12 Aligned_cols=78 Identities=17% Similarity=0.280 Sum_probs=72.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCCC
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~~ 95 (178)
.++|||+|||+.+++++|+++|+.||+|.+++|..+.. .+|||||.|.+.++|..|+..++..+.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 68999999999999999999999999999999988752 569999999999999999988999999999999998654
Q ss_pred c
Q psy2871 96 D 96 (178)
Q Consensus 96 ~ 96 (178)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=1.1e-15 Score=92.01 Aligned_cols=67 Identities=34% Similarity=0.717 Sum_probs=62.4
Q ss_pred EEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 110 MFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 110 l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
|||+|||. +++++|+++|+.||.|..+.+..+ .++.++++|||+|++.++|++|++. ++..+.|++|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 79999999 999999999999999999999987 5688999999999999999999996 8888888765
No 51
>KOG0149|consensus
Probab=99.64 E-value=6e-16 Score=110.50 Aligned_cols=75 Identities=32% Similarity=0.642 Sum_probs=70.1
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
.+..-++|||+||+| +..++|+++|++||+|....++.|+.+++++||+||.|.+.++|.+|++.-+-.|+|++.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 345667999999999 999999999999999999999999999999999999999999999999999999999873
No 52
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=2.9e-15 Score=122.33 Aligned_cols=114 Identities=15% Similarity=0.274 Sum_probs=96.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc--CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQW--GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
...++|||+|||.++++++|+++|+.| |.|..+.+++ +||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346789999999999999999999999 9999997753 6999999999999999987 8999999999999
Q ss_pred ecCCCcccC----------------------CCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeE
Q psy2871 91 RAVPRDEIG----------------------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES 135 (178)
Q Consensus 91 ~~~~~~~~~----------------------~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~ 135 (178)
++.+..... ....++.++++++.+++. .+++.++++|..+|.|..
T Consensus 303 ~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 303 LAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIRG 370 (578)
T ss_pred EccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCccccC
Confidence 997754320 011223578999999999 899999999999987643
No 53
>KOG4212|consensus
Probab=99.62 E-value=3.9e-14 Score=109.35 Aligned_cols=153 Identities=23% Similarity=0.364 Sum_probs=129.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHh-hcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFE-QWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
..|.+||.|||++....+|+++|. ..|+|+.|.++.|. .++++|.|.|+|+++|.+++|++. +...+.|++|.|...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 355699999999999999999998 57999999999998 889999999999999999999999 899999999999855
Q ss_pred CCCccc-------------------------------------------CCC----------------------------
Q psy2871 93 VPRDEI-------------------------------------------GKP---------------------------- 101 (178)
Q Consensus 93 ~~~~~~-------------------------------------------~~~---------------------------- 101 (178)
...+.. ..+
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 432110 000
Q ss_pred --------CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcC
Q psy2871 102 --------EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKI 169 (178)
Q Consensus 102 --------~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~ 169 (178)
-..+-..++||.||.. +....|++.|.--|.|+.+.+-.++. +.++|+|.++|.++-.|-+|+..++
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhc
Confidence 0001135789999999 99999999999999999999888875 5888999999999999999999855
No 54
>KOG0113|consensus
Probab=99.62 E-value=4.6e-15 Score=109.25 Aligned_cols=84 Identities=25% Similarity=0.517 Sum_probs=78.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
....++.+||||+-|+.+++|.+|+..|+.||+|..|+|+.++.+|.++|||||+|++..+...|.+. ++..|+|+.|-
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 33458899999999999999999999999999999999999999999999999999999999999998 89999999998
Q ss_pred EeecC
Q psy2871 89 TKRAV 93 (178)
Q Consensus 89 v~~~~ 93 (178)
|..-.
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 87543
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=4e-15 Score=89.81 Aligned_cols=68 Identities=32% Similarity=0.668 Sum_probs=61.6
Q ss_pred EEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcC-eeccccccC
Q psy2871 110 MFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKI-TLLLDRRVE 178 (178)
Q Consensus 110 l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~-~~~~g~~ve 178 (178)
|+|+|||. +++++|+++|+.||.|..+.+..++. +.++++|||+|.+.++|.+|+..++ ..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999 99999999999999999999999877 8999999999999999999999955 999999874
No 56
>KOG0124|consensus
Probab=99.61 E-value=4.5e-14 Score=106.88 Aligned_cols=83 Identities=18% Similarity=0.538 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
.....+|||..+.++.+++||+.+|+.||+|..|.+.+.+.++..+||+||+|.+..+...|+.. |-+.+.|..|+|..
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 34567899999999999999999999999999999999998889999999999999999999988 78899999999987
Q ss_pred cCCC
Q psy2871 92 AVPR 95 (178)
Q Consensus 92 ~~~~ 95 (178)
+...
T Consensus 287 ~vTP 290 (544)
T KOG0124|consen 287 CVTP 290 (544)
T ss_pred ccCC
Confidence 6554
No 57
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.60 E-value=1.2e-14 Score=105.32 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 94 (178)
..++|+|+||++.+|+++|+++|+.||+|.+++|.++. ..+++|||.|++.+++..|+..++..|.+++|.|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45799999999999999999999999999999999874 556899999999999999999999999999999987654
Q ss_pred C
Q psy2871 95 R 95 (178)
Q Consensus 95 ~ 95 (178)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 58
>KOG0121|consensus
Probab=99.60 E-value=3e-15 Score=97.45 Aligned_cols=84 Identities=23% Similarity=0.399 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
...+.+|||+||+..++|++|+++|+..|+|..|.+=-|+.+...=|||||+|.+.++|..|++. ++..++.++|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45688999999999999999999999999999999888887777889999999999999999999 89999999999998
Q ss_pred cCCCc
Q psy2871 92 AVPRD 96 (178)
Q Consensus 92 ~~~~~ 96 (178)
...-.
T Consensus 113 D~GF~ 117 (153)
T KOG0121|consen 113 DAGFV 117 (153)
T ss_pred cccch
Confidence 76543
No 59
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=1e-14 Score=113.30 Aligned_cols=83 Identities=20% Similarity=0.420 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecC--eEEEEe
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVETK 90 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~i~v~ 90 (178)
...++|||+|||+++|+++|+++|++||.|..++++.++.++.++|||||+|.+.++|++|++. ++..+.+ ++|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 3467899999999999999999999999999999999998999999999999999999999998 7777766 688998
Q ss_pred ecCCCc
Q psy2871 91 RAVPRD 96 (178)
Q Consensus 91 ~~~~~~ 96 (178)
++....
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 876543
No 60
>KOG0107|consensus
Probab=99.60 E-value=5.5e-15 Score=101.17 Aligned_cols=78 Identities=26% Similarity=0.525 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
-.+.|||+||+..+++.||...|..||++.++|+..++ .|||||+|++..+|..|+.. ++..|.|..|+|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36799999999999999999999999999999998854 68999999999999999999 8999999999999987
Q ss_pred CCcc
Q psy2871 94 PRDE 97 (178)
Q Consensus 94 ~~~~ 97 (178)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 7655
No 61
>KOG0125|consensus
Probab=99.60 E-value=1e-14 Score=108.73 Aligned_cols=90 Identities=26% Similarity=0.540 Sum_probs=80.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
.+...+..++|+|.|||....+.||+.+|.+||.|.+|.|+.+. .-+|||+||.|.++++|.+|.++ ++..+.||.|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 34455667899999999999999999999999999999999974 44899999999999999999999 9999999999
Q ss_pred EEeecCCCcccCC
Q psy2871 88 ETKRAVPRDEIGK 100 (178)
Q Consensus 88 ~v~~~~~~~~~~~ 100 (178)
.|..++.....++
T Consensus 167 EVn~ATarV~n~K 179 (376)
T KOG0125|consen 167 EVNNATARVHNKK 179 (376)
T ss_pred EEeccchhhccCC
Confidence 9999988755443
No 62
>KOG0126|consensus
Probab=99.59 E-value=2.2e-16 Score=108.62 Aligned_cols=81 Identities=31% Similarity=0.571 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
++--|||+|||...||.+|.-+|++||+|.+|.+++|+.+|.++||||+-|.++.+...|+.. +|..+.|+.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 345699999999999999999999999999999999999999999999999999999999999 9999999999998654
Q ss_pred CC
Q psy2871 94 PR 95 (178)
Q Consensus 94 ~~ 95 (178)
..
T Consensus 114 ~Y 115 (219)
T KOG0126|consen 114 NY 115 (219)
T ss_pred cc
Confidence 43
No 63
>KOG0114|consensus
Probab=99.59 E-value=1.8e-14 Score=90.52 Aligned_cols=88 Identities=23% Similarity=0.395 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
....-.+..++-|||+|||.++|.+++.++|..||.|++|++=..+ .-+|-|||.|.+..+|.+|++. .+..+.++
T Consensus 9 ~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 9 QNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred CCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 3444456678899999999999999999999999999999986654 4579999999999999999998 89999999
Q ss_pred EEEEeecCCCcc
Q psy2871 86 VVETKRAVPRDE 97 (178)
Q Consensus 86 ~i~v~~~~~~~~ 97 (178)
.+.|....+...
T Consensus 86 yl~vlyyq~~~~ 97 (124)
T KOG0114|consen 86 YLVVLYYQPEDA 97 (124)
T ss_pred eEEEEecCHHHH
Confidence 999987766543
No 64
>KOG0110|consensus
Probab=99.58 E-value=1.8e-14 Score=116.65 Aligned_cols=161 Identities=21% Similarity=0.272 Sum_probs=122.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.....+.|+++|||..+..+++...|..||+|..+.+. + .| --|+|.|-+..+|..|++. ....+...++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-cc---ceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 55667889999999999999999999999999998443 2 11 3599999999999999998 4455555666666
Q ss_pred ecCCCccc-------------------C-------------CCC----C--------CCcccEEEEeCCCc-ccHHHHHH
Q psy2871 91 RAVPRDEI-------------------G-------------KPE----A--------NATVKKMFVGGLKD-QEEDDLRE 125 (178)
Q Consensus 91 ~~~~~~~~-------------------~-------------~~~----~--------~~~~~~l~v~~l~~-~t~~~l~~ 125 (178)
|+...... . +.. . .....+|||.|++. .+.+++..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 54221111 0 000 0 01123499999999 99999999
Q ss_pred HhhccCceeEEEeeeCCCC---CCceeEEEEEECCHHHHHHHHHh-cCeeccccccC
Q psy2871 126 YFSQFGTIESVNMVTNKET---GAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRVE 178 (178)
Q Consensus 126 ~f~~~G~v~~~~i~~~~~~---~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~ve 178 (178)
.|..+|.|..+.|...++. -.+.|||||+|.+.++|..|+.. ++..+.|..|+
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 9999999999988766532 24569999999999999999999 45888887764
No 65
>smart00362 RRM_2 RNA recognition motif.
Probab=99.56 E-value=5.6e-14 Score=84.31 Aligned_cols=71 Identities=27% Similarity=0.585 Sum_probs=64.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 18 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
+|+|+|||+.+++++|+++|++||++..+.+..++ +..+|+|||+|.+.++|..|++. ++..+.|+.+.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 67889999999999999999998 6788899888763
No 66
>KOG0120|consensus
Probab=99.56 E-value=6.3e-14 Score=111.52 Aligned_cols=169 Identities=21% Similarity=0.415 Sum_probs=132.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
.+........++|++||...+++++.++...||++....++.+..+|.++||||-+|-+.-....|+.. +|..+.++.+
T Consensus 282 ~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~l 361 (500)
T KOG0120|consen 282 STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKL 361 (500)
T ss_pred ccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCcee
Confidence 455667778899999999999999999999999999999999998899999999999999999999998 8888888999
Q ss_pred EEeecCCCcccCC------------------CCCCCcccEEEEeCCC--c-cc-H-------HHHHHHhhccCceeEEEe
Q psy2871 88 ETKRAVPRDEIGK------------------PEANATVKKMFVGGLK--D-QE-E-------DDLREYFSQFGTIESVNM 138 (178)
Q Consensus 88 ~v~~~~~~~~~~~------------------~~~~~~~~~l~v~~l~--~-~t-~-------~~l~~~f~~~G~v~~~~i 138 (178)
.|..+........ +....+.+.|.+.|+- + +. + |+++..+.+||.|.+|.+
T Consensus 362 vvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~i 441 (500)
T KOG0120|consen 362 VVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEI 441 (500)
T ss_pred EeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEec
Confidence 9887654433211 1112233344444442 1 11 1 678888999999999999
Q ss_pred eeC-C--CCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 139 VTN-K--ETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 139 ~~~-~--~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
+++ . ......|-.||+|++.+++++|.+. .+.+|.|+.|
T Consensus 442 pr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 442 PRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred CCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 887 2 2233456789999999999999999 7777877765
No 67
>KOG4207|consensus
Probab=99.53 E-value=2.5e-14 Score=100.50 Aligned_cols=86 Identities=28% Similarity=0.539 Sum_probs=80.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
+++-+.-..|.|-||...++.++|+.+|++||.|-+|.|..|..++.++|||||.|.+..+|+.|++. ++.+++|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 45666778999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred EeecCCC
Q psy2871 89 TKRAVPR 95 (178)
Q Consensus 89 v~~~~~~ 95 (178)
|+.+...
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 9987544
No 68
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=1e-13 Score=82.89 Aligned_cols=70 Identities=29% Similarity=0.599 Sum_probs=64.4
Q ss_pred EcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 21 IGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||.|.+.++|..|++. ++..+.|+.+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999999887788999999999999999999988 6788888888763
No 69
>KOG1190|consensus
Probab=99.53 E-value=6.1e-13 Score=101.94 Aligned_cols=151 Identities=14% Similarity=0.209 Sum_probs=121.2
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 16 LRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 16 ~~~l~v~nlp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
+..|.|.||.++ +|.+.|..+|+-||+|..|+|+.++. --|+|++.+...|+.|++. .+..+.|+.|+|..+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 567889999887 59999999999999999999999863 4799999999999999999 8999999999999875
Q ss_pred CCcccCCC-----------------------------CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCC
Q psy2871 94 PRDEIGKP-----------------------------EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKE 143 (178)
Q Consensus 94 ~~~~~~~~-----------------------------~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~ 143 (178)
........ ..-+++.+|+..++|. +++|+++..|..-|-..+.......
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k- 450 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK- 450 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC-
Confidence 54322110 0113556899999999 9999999999988876554444432
Q ss_pred CCCceeEEEEEECCHHHHHHHHHh-cCeecccc
Q psy2871 144 TGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDR 175 (178)
Q Consensus 144 ~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~ 175 (178)
.+.+|++.+++.|.|..|+-. +++.+.+.
T Consensus 451 ---d~kmal~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 451 ---DRKMALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred ---CcceeecccCChhHhhhhccccccccCCCC
Confidence 234899999999999999977 66665543
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=6.5e-14 Score=103.01 Aligned_cols=68 Identities=28% Similarity=0.458 Sum_probs=62.6
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
.++|||+|||. +++++|+++|+.||+|.++.++.+.. ++|||||+|++.++|..|+..++..+.|++|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V 72 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSV 72 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceE
Confidence 46899999999 99999999999999999999988753 4689999999999999999989999999876
No 71
>KOG0130|consensus
Probab=99.52 E-value=2.9e-14 Score=93.73 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCC
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~ 94 (178)
.--|||.++.+.+++++|++.|+.||+|.++.+.-|..+|..+|||+|+|.+.+.|++|+.. |+..+.|..|.|.|+--
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 44599999999999999999999999999999999999999999999999999999999999 88999999999999854
Q ss_pred C
Q psy2871 95 R 95 (178)
Q Consensus 95 ~ 95 (178)
+
T Consensus 152 ~ 152 (170)
T KOG0130|consen 152 K 152 (170)
T ss_pred c
Confidence 3
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=1.2e-13 Score=108.26 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCH--HHHHHHHhc-CCceecCeEEEE
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEA--KMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~--~~a~~a~~~-~~~~~~g~~i~v 89 (178)
.....+||||||++.+++++|..+|..||.|.++.|++. +| +|||||+|.+. .++.+|+.. ++..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 345679999999999999999999999999999999955 44 89999999987 789999998 999999999999
Q ss_pred eecCCC
Q psy2871 90 KRAVPR 95 (178)
Q Consensus 90 ~~~~~~ 95 (178)
..+.+.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 988764
No 73
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.49 E-value=5.4e-13 Score=80.37 Aligned_cols=73 Identities=25% Similarity=0.586 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 18 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
+|+|+|||+.+++++|+++|+.+|+|..+.+..+..+ ..+|+|||+|.+.++|..|++. ++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987744 6789999999999999999998 77778999888753
No 74
>KOG0111|consensus
Probab=99.49 E-value=3e-14 Score=101.04 Aligned_cols=85 Identities=29% Similarity=0.539 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
...|+|||++|..++++.-|+..|-+||.|.+|.+.-|..+++.+|||||+|.-.++|.+|+.. +...+.|+.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3478999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred CCCccc
Q psy2871 93 VPRDEI 98 (178)
Q Consensus 93 ~~~~~~ 98 (178)
.|....
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 876543
No 75
>KOG1365|consensus
Probab=99.47 E-value=3.6e-14 Score=107.86 Aligned_cols=162 Identities=22% Similarity=0.322 Sum_probs=121.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh---c-CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEe
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQ---W-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~---~-G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~ 90 (178)
+.-.|.+++||.++++.++.++|.+ . |..+.+-++... +|+..|-|||.|..+++|+.||.++...+..+.|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456889999999999999999963 2 355566666655 8899999999999999999999998777777777665
Q ss_pred ecCCCccc------------C---C----------CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCc-eeE--EEeeeC
Q psy2871 91 RAVPRDEI------------G---K----------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGT-IES--VNMVTN 141 (178)
Q Consensus 91 ~~~~~~~~------------~---~----------~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~-v~~--~~i~~~ 141 (178)
.++..+-. . . -.......+|.+++||. .+-|+|.++|..|-. |.. +.++.+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 54322110 0 0 00112356899999999 999999999999865 333 556655
Q ss_pred CCCCCceeEEEEEECCHHHHHHHHHh-cCeeccccccC
Q psy2871 142 KETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRVE 178 (178)
Q Consensus 142 ~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~ve 178 (178)
. .|++.|-|||+|.+.++|..|... +++...++.||
T Consensus 319 ~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 319 G-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred C-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 4 588999999999999999999888 44444466654
No 76
>KOG1190|consensus
Probab=99.47 E-value=2.9e-13 Score=103.72 Aligned_cols=149 Identities=14% Similarity=0.223 Sum_probs=113.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc---CCceecCe
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGR 85 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~ 85 (178)
..+....++.|+++|||++++|+++.+++.+||.|..+.+..-+ ..||++|.+.++|...+.. ....+.|.
T Consensus 21 ~~~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~ 94 (492)
T KOG1190|consen 21 QRSMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQ 94 (492)
T ss_pred cccccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCc
Confidence 33445578999999999999999999999999999999887644 4899999999998875543 45667788
Q ss_pred EEEEeecCCCcccCC----------------------------------CCCCCcccEEEEeCCCc-ccHHHHHHHhhcc
Q psy2871 86 VVETKRAVPRDEIGK----------------------------------PEANATVKKMFVGGLKD-QEEDDLREYFSQF 130 (178)
Q Consensus 86 ~i~v~~~~~~~~~~~----------------------------------~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~ 130 (178)
+|.|+++....-..+ .....+.-.++|.++-. ++-+-|..+|++|
T Consensus 95 ~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~f 174 (492)
T KOG1190|consen 95 PIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKF 174 (492)
T ss_pred ceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhc
Confidence 888776432211100 00011223567888888 9999999999999
Q ss_pred CceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 131 G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
|.|.+|.-+.....- -|+|+|.+.++|+.|-..
T Consensus 175 G~VlKIiTF~Knn~F----QALvQy~d~~sAq~AK~a 207 (492)
T KOG1190|consen 175 GFVLKIITFTKNNGF----QALVQYTDAVSAQAAKLA 207 (492)
T ss_pred ceeEEEEEEecccch----hhhhhccchhhHHHHHHh
Confidence 999998877654322 289999999999999887
No 77
>KOG0125|consensus
Probab=99.47 E-value=1.5e-13 Score=102.59 Aligned_cols=73 Identities=25% Similarity=0.470 Sum_probs=67.4
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccccccC
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRVE 178 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~ve 178 (178)
....++|+|+|||. .-+.||+..|++||+|.++.|+.+. ..++||+||.|++.++|++|-++ ++..+.|++||
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 34567899999999 9999999999999999999999875 57889999999999999999999 99999999997
No 78
>KOG0108|consensus
Probab=99.46 E-value=3.2e-13 Score=106.76 Aligned_cols=81 Identities=25% Similarity=0.541 Sum_probs=77.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCC
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~ 95 (178)
+.+||||+|+++++++|.++|+..|.|.+++++.|..+|..+||||++|.+.++|..|++. ++..+.|+.|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999 899999999999998665
Q ss_pred cc
Q psy2871 96 DE 97 (178)
Q Consensus 96 ~~ 97 (178)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 79
>KOG0113|consensus
Probab=99.45 E-value=4.4e-13 Score=98.93 Aligned_cols=74 Identities=28% Similarity=0.498 Sum_probs=69.8
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+-.+|||+-|+. ++|..|+..|+.||+|+.|.++.++.++.++|||||+|++..+...|.+. .+..|+|++|
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 36778999999999 99999999999999999999999999999999999999999999999988 8888888875
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=9e-13 Score=78.94 Aligned_cols=67 Identities=40% Similarity=0.682 Sum_probs=60.2
Q ss_pred EEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 109 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 109 ~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
+|+|+|+|. +++++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|..|+.. ++..+.|+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i 69 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPL 69 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEE
Confidence 489999999 9999999999999999999988776 67788999999999999999998 5577888775
No 81
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=8.1e-13 Score=95.88 Aligned_cols=68 Identities=26% Similarity=0.395 Sum_probs=62.2
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
..+|+|+||++ +|+++|+++|+.||+|.++.+.++. ...++|||+|+++++|..|+..++..|.|++|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I 73 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRV 73 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceE
Confidence 46899999999 9999999999999999999999884 34469999999999999999999999999876
No 82
>KOG0121|consensus
Probab=99.43 E-value=4.5e-13 Score=87.40 Aligned_cols=73 Identities=26% Similarity=0.377 Sum_probs=65.1
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.+|||+||+. ++||+|.++|+++|+|..|.+-.+..+..+.|+|||+|-+.++|..|+.- ++..++.+.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 3567999999999 99999999999999999999999999999999999999999999999988 5555555443
No 83
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.5e-12 Score=77.70 Aligned_cols=66 Identities=42% Similarity=0.688 Sum_probs=59.5
Q ss_pred EeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 112 VGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 112 v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
|+|+|. +++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+.. ++..+.|+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~ 68 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPL 68 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEE
Confidence 578998 99999999999999999999998877788999999999999999999988 5577777765
No 84
>KOG1365|consensus
Probab=99.38 E-value=5.2e-12 Score=96.30 Aligned_cols=169 Identities=19% Similarity=0.222 Sum_probs=129.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~ 88 (178)
.....+++..+..++||+..++.+|..+|.-.....-...+.....|+..|-+.|.|-+++....|++.+...+.+++|.
T Consensus 53 ~~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryie 132 (508)
T KOG1365|consen 53 KNHSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIE 132 (508)
T ss_pred hccccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCcee
Confidence 44556667778999999999999999999866433333444445567788999999999999999999988889999999
Q ss_pred EeecCCCcccCCC----------CCCCcccEEEEeCCCc-ccHHHHHHHhhc---c-CceeEEEeeeCCCCCCceeEEEE
Q psy2871 89 TKRAVPRDEIGKP----------EANATVKKMFVGGLKD-QEEDDLREYFSQ---F-GTIESVNMVTNKETGAKRGFAFI 153 (178)
Q Consensus 89 v~~~~~~~~~~~~----------~~~~~~~~l~v~~l~~-~t~~~l~~~f~~---~-G~v~~~~i~~~~~~~~~~g~afv 153 (178)
|..+.+.+..... .+..+.-.+..++||. +++.++..+|.. . |....+-++.. .+++.+|-|||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFv 211 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFV 211 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEE
Confidence 9988776643211 1113355788999999 999999999963 2 23445544444 35889999999
Q ss_pred EECCHHHHHHHHHhcCeeccccccC
Q psy2871 154 EFNDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 154 ~F~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
-|..+++|+.||.++...+.-+.||
T Consensus 212 lfa~ee~aq~aL~khrq~iGqRYIE 236 (508)
T KOG1365|consen 212 LFACEEDAQFALRKHRQNIGQRYIE 236 (508)
T ss_pred EecCHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999977766555543
No 85
>KOG4211|consensus
Probab=99.36 E-value=1.4e-11 Score=96.60 Aligned_cols=167 Identities=20% Similarity=0.275 Sum_probs=123.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeE-EEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD-VVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i 87 (178)
.+........|.+++||..+|++||.++|+.+-.+.. +.+..++ .++..|-|||.|.+.+.|+.||..+...|.-+.|
T Consensus 96 g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYI 174 (510)
T KOG4211|consen 96 GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYI 174 (510)
T ss_pred CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceE
Confidence 3334356778999999999999999999998866666 4445554 6779999999999999999999988777777777
Q ss_pred EEeecCCCccc---------------------------------------------------------CC----------
Q psy2871 88 ETKRAVPRDEI---------------------------------------------------------GK---------- 100 (178)
Q Consensus 88 ~v~~~~~~~~~---------------------------------------------------------~~---------- 100 (178)
.|..+.-.+.. ..
T Consensus 175 EvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~ 254 (510)
T KOG4211|consen 175 EVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGG 254 (510)
T ss_pred EeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccc
Confidence 77543211000 00
Q ss_pred -----CCC--------------CCc-ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHH
Q psy2871 101 -----PEA--------------NAT-VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159 (178)
Q Consensus 101 -----~~~--------------~~~-~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~ 159 (178)
... ..+ ...++.++||. .++.++..+|+..-.+ .+.|-... ++..+|-|.|+|.+.+
T Consensus 255 ~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGEAdveF~t~e 332 (510)
T KOG4211|consen 255 RDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGEADVEFATGE 332 (510)
T ss_pred cccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCcceeecccch
Confidence 000 001 25788899999 9999999999976444 44443333 5788889999999999
Q ss_pred HHHHHHHhcCeeccccccC
Q psy2871 160 VVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 160 ~a~~a~~~~~~~~~g~~ve 178 (178)
+|-.|+...+..+..+.||
T Consensus 333 dav~Amskd~anm~hrYVE 351 (510)
T KOG4211|consen 333 DAVGAMGKDGANMGHRYVE 351 (510)
T ss_pred hhHhhhccCCcccCcceee
Confidence 9999999977777776665
No 86
>KOG0122|consensus
Probab=99.35 E-value=3.4e-12 Score=91.87 Aligned_cols=66 Identities=33% Similarity=0.540 Sum_probs=61.8
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCe
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKIT 170 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~ 170 (178)
....+|.|.||+. +++.+|.++|.+||.|..+.+.+++.+|.++|||||.|.+.++|++|+..+++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG 253 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNG 253 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccC
Confidence 4567899999999 99999999999999999999999999999999999999999999999998443
No 87
>KOG0120|consensus
Probab=99.33 E-value=4.8e-12 Score=100.92 Aligned_cols=157 Identities=25% Similarity=0.511 Sum_probs=128.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhc-----------C-ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCC
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQW-----------G-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRP 79 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~-----------G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 79 (178)
.....++++|+++|+.++++.+..+|..- | .+..+.+.. .++|||++|.+...|..|+..++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~~~~ 244 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMALDG 244 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhcccc
Confidence 44567889999999999999999999853 2 255555544 34899999999999999999999
Q ss_pred ceecCeEEEEeecCCCcccCCC-----------------CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeC
Q psy2871 80 HNIDGRVVETKRAVPRDEIGKP-----------------EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTN 141 (178)
Q Consensus 80 ~~~~g~~i~v~~~~~~~~~~~~-----------------~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~ 141 (178)
..+.|.++++............ .......+++|++||. +++.+++++...||.+....++.+
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d 324 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD 324 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc
Confidence 9999999988766554432211 1113457899999999 999999999999999999999999
Q ss_pred CCCCCceeEEEEEECCHHHHHHHHHhcCeeccc
Q psy2871 142 KETGAKRGFAFIEFNDYDVVDKIVLSKITLLLD 174 (178)
Q Consensus 142 ~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g 174 (178)
..++.++||||.+|.+..-...|++..++.-.|
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg 357 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG 357 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhhhc
Confidence 988999999999999999999999995555444
No 88
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=1.5e-11 Score=70.78 Aligned_cols=55 Identities=24% Similarity=0.575 Sum_probs=49.4
Q ss_pred HHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 33 LQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 33 l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
|+++|++||+|.++.+..++ +++|||+|.+.++|..|++. ++..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997754 58999999999999999998 999999999999875
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=2.1e-11 Score=73.27 Aligned_cols=68 Identities=43% Similarity=0.706 Sum_probs=59.7
Q ss_pred EEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 109 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 109 ~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
+|+|+|||. +++++|+++|..+|.|..+.+..+..+ .++|+|||+|.+.++|+.|+.. ++..+.|+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~ 70 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPL 70 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 378999999 999999999999999999999887654 6788999999999999999998 5555777765
No 90
>KOG4207|consensus
Probab=99.30 E-value=4.7e-12 Score=89.17 Aligned_cols=72 Identities=26% Similarity=0.451 Sum_probs=66.2
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.+..|-|-||-. ++.++|+.+|++||.|.++.|+.+..+..++|||||.|....+|+.|+++ .+..++|+.+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 456899999999 99999999999999999999999999999999999999999999999999 6667777654
No 91
>smart00361 RRM_1 RNA recognition motif.
Probab=99.29 E-value=3.3e-11 Score=72.65 Aligned_cols=60 Identities=25% Similarity=0.467 Sum_probs=53.2
Q ss_pred HHHHHHHHh----hcCceeEEE-EeeCCCC--CCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 30 DESLQAFFE----QWGEIVDVV-VMKDPIT--KRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 30 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
+++|+++|+ .||.|.++. +..++.+ +.++|||||.|.+.++|.+|++. ++..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999996 6666655 88999999999999999999998 999999999875
No 92
>KOG0130|consensus
Probab=99.28 E-value=8.4e-12 Score=82.22 Aligned_cols=72 Identities=22% Similarity=0.500 Sum_probs=65.9
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccccccC
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRVE 178 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~ve 178 (178)
.-.|||.++-. .++++|.+.|..||+|+++.+-.+..+|..+|||+|+|++.+.|+.|+.. ++..+.|+.|+
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 34799999988 99999999999999999999999999999999999999999999999999 55788887763
No 93
>KOG0126|consensus
Probab=99.27 E-value=3.9e-13 Score=92.71 Aligned_cols=71 Identities=31% Similarity=0.532 Sum_probs=65.3
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
+.-|||+|||. +||.||..+|++||+|.+|.+.++..+|.++||||+.|++..+...|+.. ++..+.|+.|
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeE
Confidence 35699999999 99999999999999999999999999999999999999999999999988 6667777654
No 94
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=3e-11 Score=72.83 Aligned_cols=58 Identities=22% Similarity=0.438 Sum_probs=49.6
Q ss_pred HHHHHHHhh----ccCceeEEE-eeeCCCC--CCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 120 EDDLREYFS----QFGTIESVN-MVTNKET--GAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 120 ~~~l~~~f~----~~G~v~~~~-i~~~~~~--~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
+++|+++|+ .||.|.++. +..++.+ +.++|+|||+|.+.++|.+|+.. ++..+.|+.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l 67 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTV 67 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 578888888 999999985 6666555 88999999999999999999998 7777888765
No 95
>KOG0153|consensus
Probab=99.25 E-value=3.5e-11 Score=90.68 Aligned_cols=81 Identities=23% Similarity=0.478 Sum_probs=74.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc--CCceecCe
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGR 85 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~--~~~~~~g~ 85 (178)
-.++++....+|||++|-..+++.+|++.|.+||+|+++.+...+ +-|||.|.+.++|+.|.++ +...++|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 356678889999999999999999999999999999999998765 7999999999999999998 78899999
Q ss_pred EEEEeecCC
Q psy2871 86 VVETKRAVP 94 (178)
Q Consensus 86 ~i~v~~~~~ 94 (178)
.|.|.|..+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999988
No 96
>KOG0107|consensus
Probab=99.25 E-value=1.7e-11 Score=84.16 Aligned_cols=67 Identities=30% Similarity=0.482 Sum_probs=58.7
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
-.++|||+||+. +++.||...|..||.+..+-|... +.|||||+|+++.+|..|+.. .+..|+|.++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~ 77 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRI 77 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceE
Confidence 357899999999 999999999999999999988764 346999999999999999988 7778888543
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.25 E-value=3.6e-11 Score=90.10 Aligned_cols=71 Identities=38% Similarity=0.670 Sum_probs=66.6
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+|||+|||. +++++|+++|..||.|..+.+..+..++.++|+|||+|.+.++|..|+.. ++..+.|+++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~ 187 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPL 187 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCcee
Confidence 58999999999 99999999999999999999999988899999999999999999999999 5588888875
No 98
>KOG0114|consensus
Probab=99.24 E-value=6.8e-11 Score=74.51 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=58.5
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDR 175 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~ 175 (178)
.....+.|||.|||. +|.+++.++|.+||.|..|+|-... ..+|-|||-|++..+|++|+.. .+..++++
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 344567899999999 9999999999999999999986553 5567899999999999999998 44444444
No 99
>KOG1456|consensus
Probab=99.23 E-value=3.3e-10 Score=86.39 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=116.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc---CCceecC
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDG 84 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g 84 (178)
..+..+..+..++|++|-..+++.+|.+.++.||+|.-+..++.+ ..|.|+|++.+.|+.|+.. +...+.|
T Consensus 23 ~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~g 96 (494)
T KOG1456|consen 23 ADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAG 96 (494)
T ss_pred CCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccC
Confidence 345566678889999999999999999999999999988887754 6899999999999999986 4566667
Q ss_pred eEEEEeecCCCcc-cCCCCCCCcccEEEEeCC-C-c-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHH
Q psy2871 85 RVVETKRAVPRDE-IGKPEANATVKKMFVGGL-K-D-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 160 (178)
Q Consensus 85 ~~i~v~~~~~~~~-~~~~~~~~~~~~l~v~~l-~-~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~ 160 (178)
.+--+..++.... ........++..|.+.-| | . +|-+-|..+....|+|..|.|++.. +. -|.|+|++.+.
T Consensus 97 q~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--gV---QAmVEFdsv~~ 171 (494)
T KOG1456|consen 97 QQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--GV---QAMVEFDSVEV 171 (494)
T ss_pred chhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc--ce---eeEEeechhHH
Confidence 6655565543332 222333344445544444 3 3 8899999999999999999998873 33 39999999999
Q ss_pred HHHHHHhcC
Q psy2871 161 VDKIVLSKI 169 (178)
Q Consensus 161 a~~a~~~~~ 169 (178)
|++|-.++|
T Consensus 172 AqrAk~alN 180 (494)
T KOG1456|consen 172 AQRAKAALN 180 (494)
T ss_pred HHHHHhhcc
Confidence 999998843
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=4.6e-11 Score=93.99 Aligned_cols=69 Identities=30% Similarity=0.557 Sum_probs=60.7
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCH--HHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY--DVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~--~~a~~a~~~-~~~~~~g~~v 177 (178)
....+|||+||+. +++++|+..|..||.|..+.|++. +| ||||||+|.+. .++.+|++. ++..+.|+.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 3446899999999 999999999999999999999943 45 89999999987 789999998 8888888875
No 101
>KOG0131|consensus
Probab=99.22 E-value=1.9e-11 Score=84.43 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=65.5
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+|||+||+. ++++.|+++|-+.|+|.++.++++..+....||||++|.++++|+-|++. +..++.|++|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpI 81 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPI 81 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCcee
Confidence 346899999999 99999999999999999999999999889999999999999999999988 5566777765
No 102
>KOG0415|consensus
Probab=99.22 E-value=4.1e-11 Score=90.68 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
...+.+.|||.-|+|-+++++|.-+|+.||.|.+|.++++..+|.+..||||+|.+.+++..|.=+ ++..|+++.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 445677999999999999999999999999999999999999999999999999999999999866 8899999999999
Q ss_pred ecCC
Q psy2871 91 RAVP 94 (178)
Q Consensus 91 ~~~~ 94 (178)
++..
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 8754
No 103
>KOG0111|consensus
Probab=99.18 E-value=1.5e-11 Score=87.49 Aligned_cols=73 Identities=27% Similarity=0.536 Sum_probs=67.6
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...++|||++|.+ +++.-|...|-+||.|..|.++.+..++.+||||||+|...|+|..|+.. +...+.|+.|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grti 82 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTI 82 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeE
Confidence 3457999999999 99999999999999999999999999999999999999999999999988 7778888765
No 104
>KOG0132|consensus
Probab=99.17 E-value=1e-10 Score=96.14 Aligned_cols=106 Identities=19% Similarity=0.349 Sum_probs=84.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
-+||||||+|+..+++.+|.++|+.||+|.+|.++.. +|.|||.+...++|.+|+.+ ....+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3789999999999999999999999999999999875 48999999999999999998 7888999999999998
Q ss_pred CCcccCCCCCCCcccEEEEeCCCc--ccHHHHHHHhh
Q psy2871 94 PRDEIGKPEANATVKKMFVGGLKD--QEEDDLREYFS 128 (178)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~v~~l~~--~t~~~l~~~f~ 128 (178)
.+-... +-...-...+=|.-||+ ++.+ +..+++
T Consensus 494 g~G~ks-e~k~~wD~~lGVt~IP~~kLt~d-l~~~~e 528 (894)
T KOG0132|consen 494 GKGPKS-EYKDYWDVELGVTYIPWEKLTDD-LEAWCE 528 (894)
T ss_pred cCCcch-hhhhhhhcccCeeEeehHhcCHH-HHHhhh
Confidence 766544 11222222334455576 6655 555554
No 105
>KOG4212|consensus
Probab=99.16 E-value=1.7e-09 Score=84.16 Aligned_cols=65 Identities=31% Similarity=0.479 Sum_probs=59.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 77 (178)
.+....++||.||...+....|++.|.-.|.|+.+.+-.++ -+.++|+|.++|..+-.|-.|+.+
T Consensus 211 ~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 211 SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred CCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHh
Confidence 45667789999999999999999999999999999999998 558999999999999999888877
No 106
>KOG0108|consensus
Probab=99.15 E-value=8.4e-11 Score=93.18 Aligned_cols=70 Identities=29% Similarity=0.536 Sum_probs=66.6
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+||+++|. +++++|..+|+..|.|.++++..|..+|.++||||++|.+.++|..|+.. ++..+.|+++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 7899999999 99999999999999999999999999999999999999999999999999 6678888876
No 107
>KOG4205|consensus
Probab=99.15 E-value=1.7e-10 Score=87.89 Aligned_cols=160 Identities=29% Similarity=0.499 Sum_probs=111.1
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceec
Q psy2871 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNID 83 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 83 (178)
+.+..........+.|||++||+++++.++++.|.+||.|..+.++.|..+.+.+||+||.|.+.+.+.+++...-..+.
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~ 164 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFN 164 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeec
Confidence 33444444445677999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEee-eCCC----CCCceeEEEEEECC
Q psy2871 84 GRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMV-TNKE----TGAKRGFAFIEFND 157 (178)
Q Consensus 84 g~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~-~~~~----~~~~~g~afv~F~~ 157 (178)
++.+.|..+.++.......... +......+++. .+.-.|..+|..||.+.....- .... ...+.+.+|..|.+
T Consensus 165 gk~vevkrA~pk~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~ 243 (311)
T KOG4205|consen 165 GKKVEVKRAIPKEVMQSTKSSV-STRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFNGGSGYPEFGN 243 (311)
T ss_pred CceeeEeeccchhhcccccccc-ccccccccccccccccccchhccccCccccccccccccccccccccCCCccccccCc
Confidence 9999999999988765432211 01111113333 4444455666666655411100 0000 00234577888875
Q ss_pred HHHHHHH
Q psy2871 158 YDVVDKI 164 (178)
Q Consensus 158 ~~~a~~a 164 (178)
......+
T Consensus 244 ~~~~~~~ 250 (311)
T KOG4205|consen 244 SGLGFGY 250 (311)
T ss_pred ccccccc
Confidence 5554433
No 108
>KOG4676|consensus
Probab=99.15 E-value=3.3e-11 Score=92.10 Aligned_cols=153 Identities=10% Similarity=0.063 Sum_probs=120.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCC---CCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeec
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPI---TKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 92 (178)
...|.|.||+|+++.++++.+|..+|+|.++.+++... .......|||.|.+..++..|-.....++-++.|.|.+.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 44899999999999999999999999999999988543 246778999999999999999988778888888888765
Q ss_pred CCCcccC-------------------C-------------CC------------------CCCcccEEEEeCCCc-ccHH
Q psy2871 93 VPRDEIG-------------------K-------------PE------------------ANATVKKMFVGGLKD-QEED 121 (178)
Q Consensus 93 ~~~~~~~-------------------~-------------~~------------------~~~~~~~l~v~~l~~-~t~~ 121 (178)
....... . .. ...-.++++|.+|+. |-..
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 3322100 0 00 000146788999988 8999
Q ss_pred HHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeec
Q psy2871 122 DLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLL 172 (178)
Q Consensus 122 ~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~ 172 (178)
++-..|..+|+|.+........ ..+|.++|....+.+.|+..++..+
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~halr~~gre~ 213 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHALRSHGRER 213 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHHHhcchhh
Confidence 9999999999998877654432 2268899999999999999877654
No 109
>KOG1456|consensus
Probab=99.12 E-value=9.1e-09 Score=78.64 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=119.8
Q ss_pred CCCCCCCeEEEcCCCCCC-CHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 11 TEPESLRKVFIGGLDYRT-TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~-t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
....+...++|-+|.... +-+.|.++|+.||.|..|++++.+ .|-|.|++.+....++|+.- ++..+.|..|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 445566789999999875 888999999999999999999865 47899999999999999998 77888888888
Q ss_pred EeecCCCcccC---------------------C----------CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCc-eeE
Q psy2871 89 TKRAVPRDEIG---------------------K----------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGT-IES 135 (178)
Q Consensus 89 v~~~~~~~~~~---------------------~----------~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~-v~~ 135 (178)
|-.+....... . ..-..++..|+.-|.|. +||+.|..+|...+. -.+
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 87664432110 0 01124678899999999 999999999997654 466
Q ss_pred EEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCe
Q psy2871 136 VNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKIT 170 (178)
Q Consensus 136 ~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~ 170 (178)
++++.-++. ++ ..++++|++.++|-.||..+|+
T Consensus 437 vkvFp~kse-rS-ssGllEfe~~s~Aveal~~~NH 469 (494)
T KOG1456|consen 437 VKVFPLKSE-RS-SSGLLEFENKSDAVEALMKLNH 469 (494)
T ss_pred EEeeccccc-cc-ccceeeeehHHHHHHHHHHhcc
Confidence 777766532 22 2589999999999999998554
No 110
>KOG0128|consensus
Probab=99.12 E-value=4e-12 Score=105.11 Aligned_cols=130 Identities=23% Similarity=0.348 Sum_probs=113.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 94 (178)
...++|++||++.+.+.+|...|.++|.+..+++...+..++.+|+||+.|..++++.+|+......+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 3456899999999999999999999999988888766678899999999999999999999985444444
Q ss_pred CcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 95 RDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 95 ~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
...++|+|+|. .|.++++.+++..|.+...+++... .|.++|.|+|.|.+..+|.+++.+
T Consensus 736 ------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s 796 (881)
T KOG0128|consen 736 ------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVAS 796 (881)
T ss_pred ------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhccc
Confidence 23589999999 9999999999999999999866554 589999999999999999998866
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=2.7e-10 Score=65.52 Aligned_cols=50 Identities=30% Similarity=0.574 Sum_probs=43.3
Q ss_pred HHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 123 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 123 l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
|+++|++||+|..+.+..+. +++|||+|.+.++|..|+.. ++..+.|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l 51 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPL 51 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 67899999999999997664 45899999999999999997 8888888876
No 112
>KOG4210|consensus
Probab=99.10 E-value=1.6e-10 Score=87.47 Aligned_cols=153 Identities=23% Similarity=0.275 Sum_probs=123.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCc-eecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPH-NIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~-~~~g~~i~v~~~~ 93 (178)
...++|++++...+.+.+...++..+|...............++|++++.|...+.+..|+...+. .+.+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 577899999999999998999999999888888877777788999999999999999999998543 4444444333222
Q ss_pred CCcc----cC-CCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 94 PRDE----IG-KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 94 ~~~~----~~-~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
.... .. ..........+++.+++. +++++|+..|..+|.|..++++....++...|+|+++|.....+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 2221 11 112223344455999999 99999999999999999999999999999999999999999999999986
No 113
>KOG4454|consensus
Probab=99.07 E-value=3.3e-11 Score=85.61 Aligned_cols=137 Identities=20% Similarity=0.326 Sum_probs=109.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
..+...|+|||.|+...++++-|.++|-+-|+|..+.|...+ ++..+ ||||.|+++-+...|++. ++..+.+..+.+
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 456678999999999999999999999999999999887776 55566 999999999999999998 899999988887
Q ss_pred eecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHH
Q psy2871 90 KRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (178)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~ 165 (178)
..-....- .-+.. ++++.+...|+.-|.+...++..+.+ +.++.+.|+.+....+.=.++
T Consensus 82 ~~r~G~sh---------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~ 142 (267)
T KOG4454|consen 82 TLRCGNSH---------------APLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFAL 142 (267)
T ss_pred ccccCCCc---------------chhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHh
Confidence 64322110 01334 78889999999999999999988865 777778888775544444443
No 114
>KOG0105|consensus
Probab=99.07 E-value=2.6e-10 Score=79.22 Aligned_cols=70 Identities=20% Similarity=0.422 Sum_probs=58.3
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.|+|+|||. +-+.+|.++|.+||.|..|.+.... .+..||||+|+++.+|..|+.- .+-.+.|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rL 75 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRL 75 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceE
Confidence 3467899999999 9999999999999999999886553 3345999999999999999988 6556666543
No 115
>KOG0146|consensus
Probab=99.05 E-value=2.9e-10 Score=83.18 Aligned_cols=88 Identities=24% Similarity=0.357 Sum_probs=80.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
..+..+..+|||=.||.+..+.||.+.|-+||.|.+.+++.|.-++.++.|+||.|.+..+++.|+.. ||+.|.-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 44667788999999999999999999999999999999999999999999999999999999999998 99999889999
Q ss_pred EeecCCCcc
Q psy2871 89 TKRAVPRDE 97 (178)
Q Consensus 89 v~~~~~~~~ 97 (178)
|....++..
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 987766553
No 116
>KOG4208|consensus
Probab=99.04 E-value=9.5e-10 Score=77.60 Aligned_cols=81 Identities=14% Similarity=0.292 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc-CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQW-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
..--+++..+|....+.++..+|.++ |.+...++.+++.+|.++|||||+|.+.+.|.-|-+. |+..+.++-|.+..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34468999999999999999999988 8899999999999999999999999999999999887 888889998888876
Q ss_pred CCC
Q psy2871 93 VPR 95 (178)
Q Consensus 93 ~~~ 95 (178)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 555
No 117
>KOG0116|consensus
Probab=99.03 E-value=9.5e-10 Score=86.81 Aligned_cols=80 Identities=24% Similarity=0.416 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCCC
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~~ 95 (178)
..+|||+|||+++++++|+++|..||+|....|....-.+....||||+|.+.++++.|++.+...+.++.+.|+...+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 34599999999999999999999999999988877553445559999999999999999999999999999999865543
No 118
>KOG4660|consensus
Probab=99.00 E-value=6.1e-10 Score=88.67 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=102.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
.......+.++|+|-|||+.+++++|+.+|+.||+|+.++..+. .+|.+||+|.|..+|++|+++ ++..+.|+.
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 34445677899999999999999999999999999999776544 568999999999999999999 888888888
Q ss_pred EEEeecCCCccc----------------CCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCcee
Q psy2871 87 VETKRAVPRDEI----------------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRG 149 (178)
Q Consensus 87 i~v~~~~~~~~~----------------~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g 149 (178)
|........... .......+...+++- |+. .+...+...+..+|.+.. +. ++...+
T Consensus 142 ~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~h 214 (549)
T KOG4660|consen 142 IKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE-----TPLLNH 214 (549)
T ss_pred hcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc-----ccchhh
Confidence 772222111111 111112233445544 666 666666777778887765 32 233333
Q ss_pred EEEEEECCHHHHHHHHH
Q psy2871 150 FAFIEFNDYDVVDKIVL 166 (178)
Q Consensus 150 ~afv~F~~~~~a~~a~~ 166 (178)
--+++|.+..++..++.
T Consensus 215 q~~~~~~~~~s~a~~~~ 231 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEP 231 (549)
T ss_pred hhhhhhccccchhhccc
Confidence 56788988888855444
No 119
>KOG0415|consensus
Probab=99.00 E-value=7.4e-10 Score=83.98 Aligned_cols=73 Identities=30% Similarity=0.560 Sum_probs=66.4
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
++.+.|||--|.. +++++|.-+|++||+|.++.+.++..+|.+..||||+|++.+++.+|.-+ .|..|..++|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 4678999999988 89999999999999999999999999999999999999999999999877 6667777665
No 120
>KOG0226|consensus
Probab=98.99 E-value=1.1e-09 Score=79.51 Aligned_cols=160 Identities=17% Similarity=0.299 Sum_probs=121.6
Q ss_pred CCeEEEcCCCCCCCHHH-H--HHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 16 LRKVFIGGLDYRTTDES-L--QAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~-l--~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
...++++++-..+..+- + ...|+.+..+..-.++++. .+..++++|+.|+....-..+-.. .+..+...++++..
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 44566777666665554 3 6777777666666666665 667889999999988877777666 55555555577665
Q ss_pred cCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCe
Q psy2871 92 AVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKIT 170 (178)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~ 170 (178)
.+..+...-..-.....+||.+.|.- ++++-|-..|.+|-.....++.+++.++.++||+||.|.+.+++..|+..+++
T Consensus 175 gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 175 GTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred ccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcc
Confidence 55544433333445567899999987 99999999999998888999999999999999999999999999999999666
Q ss_pred eccccc
Q psy2871 171 LLLDRR 176 (178)
Q Consensus 171 ~~~g~~ 176 (178)
...|.+
T Consensus 255 kyVgsr 260 (290)
T KOG0226|consen 255 KYVGSR 260 (290)
T ss_pred cccccc
Confidence 665554
No 121
>KOG4208|consensus
Probab=98.94 E-value=3.3e-09 Score=74.93 Aligned_cols=72 Identities=28% Similarity=0.478 Sum_probs=62.1
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhcc-CceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQF-GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRR 176 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~-G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ 176 (178)
.....+++..+|. +-+.++..+|.++ |.|...++.++..+|.++|||||+|++.+.|.-|-+.+|++|.+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 3456789999999 9999999999988 6788888889999999999999999999999999998777666443
No 122
>KOG0109|consensus
Probab=98.93 E-value=2.5e-09 Score=79.11 Aligned_cols=78 Identities=18% Similarity=0.434 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
...+.+|+|+||.+.++.++|+..|++||+|..+.|++ +|+||-|...++|..|++. ++..++|++++|+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 44577899999999999999999999999999999987 4999999999999999988 89999999999998
Q ss_pred cCCCccc
Q psy2871 92 AVPRDEI 98 (178)
Q Consensus 92 ~~~~~~~ 98 (178)
+......
T Consensus 147 stsrlrt 153 (346)
T KOG0109|consen 147 STSRLRT 153 (346)
T ss_pred ecccccc
Confidence 8766543
No 123
>KOG0112|consensus
Probab=98.89 E-value=1.4e-09 Score=90.75 Aligned_cols=144 Identities=17% Similarity=0.324 Sum_probs=109.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
...+++||++||+..+++.+|+..|..+|.+..+.|-.-+ -+....||||.|.+-..+-.|... .+..|....+++..
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 4558899999999999999999999999999999986654 334456999999988887777666 33333333333333
Q ss_pred cCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCe
Q psy2871 92 AVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKIT 170 (178)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~ 170 (178)
..+ .....+.+++++++. ..-..|...|..||.|..|.+-..+ + ||+|.|++...|+.|+..+.+
T Consensus 448 G~~--------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~--yayi~yes~~~aq~a~~~~rg 513 (975)
T KOG0112|consen 448 GQP--------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----P--YAYIQYESPPAAQAATHDMRG 513 (975)
T ss_pred ccc--------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----c--ceeeecccCccchhhHHHHhc
Confidence 222 334556899999988 5667899999999999997764332 2 999999999999999988444
Q ss_pred e
Q psy2871 171 L 171 (178)
Q Consensus 171 ~ 171 (178)
.
T Consensus 514 a 514 (975)
T KOG0112|consen 514 A 514 (975)
T ss_pred C
Confidence 3
No 124
>KOG0153|consensus
Probab=98.89 E-value=5.5e-09 Score=79.00 Aligned_cols=69 Identities=29% Similarity=0.611 Sum_probs=60.1
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh--cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS--KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~--~~~~~~g~~v 177 (178)
.+....+|||++|.+ +++.+|+++|.+||+|..+.+.... ++|||+|.+.++|..|.+. +...++|.+|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 345678999999988 9999999999999999999997654 3899999999999999988 6667778765
No 125
>KOG4661|consensus
Probab=98.87 E-value=1.2e-08 Score=81.86 Aligned_cols=83 Identities=20% Similarity=0.463 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
..-.|+|||.+|+..+...+|+++|++||.|...+++.+-.+.-.+.|+||.+.+.++|.+||.. +...|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 44578999999999999999999999999999999998877767788999999999999999998 88999999999998
Q ss_pred cCCC
Q psy2871 92 AVPR 95 (178)
Q Consensus 92 ~~~~ 95 (178)
+...
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 7554
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.86 E-value=3.4e-08 Score=62.73 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhh--cCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQ--WGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (178)
.+|+|+|||...|.++|.+++.. .|...-+.+..|..++.+.|||||.|.+++.|....+. +|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 58999999999999999999985 38889999999998999999999999999999998887 665553
No 127
>KOG0533|consensus
Probab=98.82 E-value=3.3e-08 Score=72.73 Aligned_cols=86 Identities=22% Similarity=0.352 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.+....+|+|.|||..+++++|+++|..||.+..+-+..++ .|++.|.|-|.|...++|..|++. ++..++|+++++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44455789999999999999999999999999888888887 889999999999999999999999 8899999999888
Q ss_pred ecCCCccc
Q psy2871 91 RAVPRDEI 98 (178)
Q Consensus 91 ~~~~~~~~ 98 (178)
...+....
T Consensus 158 ~i~~~~~~ 165 (243)
T KOG0533|consen 158 IISSPSQS 165 (243)
T ss_pred EecCcccc
Confidence 76554443
No 128
>KOG4206|consensus
Probab=98.77 E-value=2.9e-08 Score=71.16 Aligned_cols=69 Identities=20% Similarity=0.426 Sum_probs=59.3
Q ss_pred cccEEEEeCCCc-ccHHHHHH----HhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLRE----YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~----~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
++.+|||.||++ +..++|+. +|++||+|..|..... ...+|-|||.|++.++|..|+.. +|..+.|+.+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 344999999999 98888887 9999999999998765 56778899999999999999999 6777777764
No 129
>KOG4307|consensus
Probab=98.77 E-value=2.6e-08 Score=81.52 Aligned_cols=161 Identities=13% Similarity=0.083 Sum_probs=120.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeec
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 92 (178)
..+..-+-+++.+.+....+++++|-.. .+....|..+...+...|-++|+|...+.++.|++.+...+-.+.+.+.++
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPP 386 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCC
Confidence 3455667788999999999999998753 356666666665666689999999999999999999888888888888766
Q ss_pred CCCcccCC---------------------------------CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEe
Q psy2871 93 VPRDEIGK---------------------------------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNM 138 (178)
Q Consensus 93 ~~~~~~~~---------------------------------~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i 138 (178)
....+... .........|||..||. +++.++-+.|...-.|++...
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 44432110 01112346899999999 888899999998888888544
Q ss_pred eeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccc
Q psy2871 139 VTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLD 174 (178)
Q Consensus 139 ~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g 174 (178)
+...-++..++.|||.|.+++++..|+.-.....-|
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G 502 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPG 502 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccC
Confidence 444446777889999999999888887663333333
No 130
>KOG0226|consensus
Probab=98.68 E-value=2.2e-08 Score=72.89 Aligned_cols=89 Identities=20% Similarity=0.380 Sum_probs=79.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
+-...+.+..+||-+.|.-+++++-|-..|++|......++++++.+|+++||+||.|.+..++..||.+ ++..+..++
T Consensus 182 sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 182 SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRP 261 (290)
T ss_pred ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccch
Confidence 3344566778999999999999999999999999999999999999999999999999999999999998 888888899
Q ss_pred EEEeecCCCc
Q psy2871 87 VETKRAVPRD 96 (178)
Q Consensus 87 i~v~~~~~~~ 96 (178)
|++..+..++
T Consensus 262 iklRkS~wke 271 (290)
T KOG0226|consen 262 IKLRKSEWKE 271 (290)
T ss_pred hHhhhhhHHh
Confidence 9887665554
No 131
>KOG0132|consensus
Probab=98.67 E-value=4.4e-08 Score=81.03 Aligned_cols=66 Identities=27% Similarity=0.542 Sum_probs=57.2
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
-+++|||++|+. +++++|.++|+.||.|.+|.+. .++++|||...+..+|.+|+.+ .+..+.++.|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~I 487 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTI 487 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccceee
Confidence 378999999999 9999999999999999999984 4557999999999999999988 5556655543
No 132
>KOG4661|consensus
Probab=98.66 E-value=5.2e-08 Score=78.33 Aligned_cols=71 Identities=24% Similarity=0.451 Sum_probs=63.7
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.+.|||.+|.. +-..+|+.+|++||+|.-.+++.+..++..++|+||.+.+.++|.+||+. +...+.|+-|
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmI 477 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMI 477 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceee
Confidence 57899999999 55679999999999999999999988888899999999999999999998 7777777643
No 133
>KOG0116|consensus
Probab=98.64 E-value=4.9e-08 Score=77.25 Aligned_cols=71 Identities=24% Similarity=0.389 Sum_probs=60.5
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
...|||.+||. .+..+|++.|..||.|+...|......+...+||||+|++.+++..|+++....+.|+++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl 359 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKL 359 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeE
Confidence 34599999999 999999999999999999888776533333389999999999999999998877877764
No 134
>KOG4209|consensus
Probab=98.63 E-value=7e-08 Score=71.03 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEe
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~ 90 (178)
....+.+.+||+|+...+|.+++...|+.+|.+..+.+..++..+..+||+||+|.+.+.+..++..++..+.|..+.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 34566789999999999999999999999999999999999988889999999999999999999999999999999988
Q ss_pred ecCCC
Q psy2871 91 RAVPR 95 (178)
Q Consensus 91 ~~~~~ 95 (178)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 76554
No 135
>KOG4660|consensus
Probab=98.59 E-value=5.9e-08 Score=77.61 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=61.8
Q ss_pred CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 101 PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 101 ~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.+.++|+|.|||. +++++|..+|+.||+|..++. +...+|++||+|-+..+|++|+++ ++..+.|+++
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 33456778999999999 999999999999999998664 456678999999999999999999 7777877765
No 136
>KOG0151|consensus
Probab=98.55 E-value=3.1e-07 Score=75.49 Aligned_cols=83 Identities=14% Similarity=0.274 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCC---CCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPI---TKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
+...++|||+||++.++++.|..-|..||+|.+++++--.. ..+.+..+||.|.+..+|.+|++. ++..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44577899999999999999999999999999998876442 245677899999999999999999 89999999999
Q ss_pred EeecCCC
Q psy2871 89 TKRAVPR 95 (178)
Q Consensus 89 v~~~~~~ 95 (178)
+.|+..-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998543
No 137
>KOG4209|consensus
Probab=98.49 E-value=2.3e-07 Score=68.32 Aligned_cols=77 Identities=21% Similarity=0.389 Sum_probs=68.8
Q ss_pred CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccccC
Q psy2871 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
......+.+||+++.. +|.+++...|+.||.+..+.++.+...+.++|+|||+|.+.+.+..|+..++..+.|..++
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIE 173 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccce
Confidence 3445678899999998 8888899999999999999999999888899999999999999999999888888887653
No 138
>KOG0533|consensus
Probab=98.44 E-value=7.8e-07 Score=65.57 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=64.3
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.+|.|.||+. ++++||+++|..||.++.+.+++++ .+.+.|.|-|.|+..++|..|++. ++..++|+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 34457899999999 9999999999999999999998886 588889999999999999999999 7777777654
No 139
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.34 E-value=1.8e-06 Score=55.95 Aligned_cols=53 Identities=23% Similarity=0.464 Sum_probs=35.4
Q ss_pred EEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 109 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 109 ~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
.|++.+++. ++.++|++.|+.||.|.+|.+..... -|+|+|.++++|+.|+..
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHH
Confidence 578888887 99999999999999999998866443 599999999999999987
No 140
>KOG0128|consensus
Probab=98.32 E-value=3.3e-08 Score=82.49 Aligned_cols=160 Identities=20% Similarity=0.184 Sum_probs=123.0
Q ss_pred CCeEEEcCCCCCCCHH-HHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCC
Q psy2871 16 LRKVFIGGLDYRTTDE-SLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~-~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 94 (178)
.+...+.++.+...+. ..+..|..+|.|..+++............+++.+....+++.|....+..+.++...+..+.+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 4556778888887666 567778899999999876533233344488999999999999998877778888888877766
Q ss_pred CcccCCCCCCC----cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcC
Q psy2871 95 RDEIGKPEANA----TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKI 169 (178)
Q Consensus 95 ~~~~~~~~~~~----~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~ 169 (178)
......-...+ ...++|+++++. +++++|...|..+|.+..+.+....+.+..+|+|++.|..++.+.+|+....
T Consensus 651 ~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d 730 (881)
T KOG0128|consen 651 EEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD 730 (881)
T ss_pred hhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh
Confidence 65333222221 234689999999 9999999999999988877776555678899999999999999999998866
Q ss_pred eecccc
Q psy2871 170 TLLLDR 175 (178)
Q Consensus 170 ~~~~g~ 175 (178)
..+.|+
T Consensus 731 ~~~~gK 736 (881)
T KOG0128|consen 731 SCFFGK 736 (881)
T ss_pred hhhhhh
Confidence 665553
No 141
>KOG2193|consensus
Probab=98.29 E-value=8.8e-08 Score=74.46 Aligned_cols=134 Identities=16% Similarity=0.326 Sum_probs=102.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc--CCceecCeEEEEeecCC
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGRVVETKRAVP 94 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~--~~~~~~g~~i~v~~~~~ 94 (178)
..+|++||++.++.+++..+|...-.--+-.++. ..||+||...+..-|.+|++. ....+.|..+.+..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999999999999997541111111222 238999999999999999998 35677888888877665
Q ss_pred CcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 95 RDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 95 ~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
+.. .++++.|.++|. +..+-|-.+...||.+.++..+...... ...-|.|.+.+.+..|+..
T Consensus 76 kkq--------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et---avvnvty~~~~~~~~ai~k 138 (584)
T KOG2193|consen 76 KKQ--------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET---AVVNVTYSAQQQHRQAIHK 138 (584)
T ss_pred HHH--------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH---HHHHHHHHHHHHHHHHHHh
Confidence 543 345689999999 9999999999999999998886543211 1234788999999999987
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.27 E-value=7.1e-06 Score=50.09 Aligned_cols=70 Identities=13% Similarity=0.293 Sum_probs=45.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh----c-CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 18 KVFIGGLDYRTTDESLQAFFEQ----W-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 18 ~l~v~nlp~~~t~~~l~~~f~~----~-G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
.|+|.|||.+.+...|+.-+++ + |.|.++. .+-|.|.|.+.+.|.+|.+. .+....|..|.|.+
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 5899999999998877766664 3 6666552 27899999999999999998 88999999999998
Q ss_pred cCCCcc
Q psy2871 92 AVPRDE 97 (178)
Q Consensus 92 ~~~~~~ 97 (178)
......
T Consensus 74 ~~~~r~ 79 (90)
T PF11608_consen 74 SPKNRE 79 (90)
T ss_dssp S--S--
T ss_pred cCCccc
Confidence 754433
No 143
>KOG4454|consensus
Probab=98.27 E-value=4.9e-07 Score=64.68 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=60.0
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..++|+|.|+.. ++++-|.++|-+-|+|.++.|+..++...+ ||||.|+++.+..-|++. ++-.+.|..+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k--Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~ 79 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK--FAYVFFPNENSVQLAGQLENGDDLEEDEE 79 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc--eeeeecccccchhhhhhhcccchhccchh
Confidence 357899999999 999999999999999999999988764443 999999999999999988 6656666543
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.18 E-value=2.1e-05 Score=50.02 Aligned_cols=66 Identities=9% Similarity=0.206 Sum_probs=54.5
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhcc--CceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecc
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQF--GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLL 173 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~--G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~ 173 (178)
++|.|+|+|- .+.++|.+.+... |..--+.++.|..++.+.|||||-|.++++|..-... ++..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 5899999999 9999999888753 5555566777777889999999999999999988887 655554
No 145
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.17 E-value=1e-05 Score=45.71 Aligned_cols=52 Identities=15% Similarity=0.388 Sum_probs=42.3
Q ss_pred cEEEEeCCCcccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHH
Q psy2871 108 KKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (178)
Q Consensus 108 ~~l~v~~l~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~ 165 (178)
+.|-|.|.+.-..+.+...|..||+|..+.+.... .+.+|+|++..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 46788899885556777799999999998886222 27999999999999985
No 146
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.16 E-value=1.9e-05 Score=50.56 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=48.8
Q ss_pred ccEEEEeCCCcccHHHHHHHhhccCceeEEEeeeCC-------CCCCceeEEEEEECCHHHHHHHHHhcCeeccccc
Q psy2871 107 VKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNK-------ETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRR 176 (178)
Q Consensus 107 ~~~l~v~~l~~~t~~~l~~~f~~~G~v~~~~i~~~~-------~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ 176 (178)
.+-|.|-|.|......+.+.|++||+|....-.... .......+..|+|.++.+|.+||..++..+.|.-
T Consensus 6 ~~wVtVFGfp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred CeEEEEEccCHHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 456889999997778889999999998776411110 0112234899999999999999999999888753
No 147
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.09 E-value=1.1e-05 Score=52.36 Aligned_cols=54 Identities=20% Similarity=0.392 Sum_probs=36.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc
Q psy2871 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 18 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 77 (178)
.|++.+++..++.++|++.|+.||+|..|.+.... .-|||.|.+.+.|+.|++.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHH
Confidence 57899999999999999999999999988876532 5899999999999999987
No 148
>KOG1457|consensus
Probab=97.99 E-value=9.2e-06 Score=58.48 Aligned_cols=66 Identities=15% Similarity=0.294 Sum_probs=53.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCc
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH 80 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~ 80 (178)
.......+|||-||.+++||++|+.+|+.|.....++|... + .-..||++|.+.+.|..||.. +|.
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhcc
Confidence 34556778999999999999999999999988777776543 2 335899999999999999986 443
No 149
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.99 E-value=2.8e-05 Score=43.92 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=42.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHH
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 75 (178)
+.|-|.|.|++..+. +...|..||+|..+.+-. ...+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 578899999887754 555888999999988762 2369999999999999985
No 150
>KOG1995|consensus
Probab=97.99 E-value=1.5e-05 Score=60.97 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=75.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCcee--------EEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-C
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--------DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R 78 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~ 78 (178)
+........-+|||-+||..+++.+|.++|.++|.|. .|++-.++.+++.+|-|.|.|.+..+|+.|+.- +
T Consensus 58 ~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a 137 (351)
T KOG1995|consen 58 SSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA 137 (351)
T ss_pred CccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc
Confidence 3333455566899999999999999999999998774 467788888999999999999999999999998 8
Q ss_pred CceecCeEEEEeecCCCc
Q psy2871 79 PHNIDGRVVETKRAVPRD 96 (178)
Q Consensus 79 ~~~~~g~~i~v~~~~~~~ 96 (178)
+..+.+..|+|..+.-..
T Consensus 138 gkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 138 GKDFCGNTIKVSLAERRT 155 (351)
T ss_pred cccccCCCchhhhhhhcc
Confidence 888889888887765443
No 151
>KOG4210|consensus
Probab=97.98 E-value=7.5e-06 Score=62.30 Aligned_cols=82 Identities=27% Similarity=0.514 Sum_probs=72.6
Q ss_pred CCeEE-EcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCC
Q psy2871 16 LRKVF-IGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (178)
Q Consensus 16 ~~~l~-v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 94 (178)
..+++ +++++..+++++|+..|..+|.|..+++..+..++..+|||+|.|.....+..++......+.++++.+....+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 34455 99999999999999999999999999999999999999999999999999999999766778888898887766
Q ss_pred Ccc
Q psy2871 95 RDE 97 (178)
Q Consensus 95 ~~~ 97 (178)
...
T Consensus 264 ~~~ 266 (285)
T KOG4210|consen 264 RPK 266 (285)
T ss_pred Ccc
Confidence 543
No 152
>KOG1548|consensus
Probab=97.98 E-value=2.9e-05 Score=59.25 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=58.9
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeE--------EEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIES--------VNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDR 175 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~--------~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~ 175 (178)
.++.|||+|||. +|.+++..+|++||-|.. |++.++. .|..+|-|+|.|--.+++..|+.. ....+.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 356799999999 999999999999997743 6666665 489999999999999999999998 55556666
Q ss_pred cc
Q psy2871 176 RV 177 (178)
Q Consensus 176 ~v 177 (178)
.|
T Consensus 212 ~~ 213 (382)
T KOG1548|consen 212 KL 213 (382)
T ss_pred EE
Confidence 54
No 153
>KOG0151|consensus
Probab=97.96 E-value=1.7e-05 Score=65.62 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=56.6
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCC---CCceeEEEEEECCHHHHHHHHHhcCe
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET---GAKRGFAFIEFNDYDVVDKIVLSKIT 170 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~---~~~~g~afv~F~~~~~a~~a~~~~~~ 170 (178)
+..+.|||+|++. +++++|...|.+||+|..++|+..... ...+.++||-|.+..+|.+|+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg 241 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG 241 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc
Confidence 4457899999988 999999999999999999999987543 34466899999999999999998433
No 154
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.95 E-value=7.2e-05 Score=47.85 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=54.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEE-EeeCC------CCCCccceEEEEeCCHHHHHHHHhcCCceecCe-
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVV-VMKDP------ITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGR- 85 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~-~~~~~------~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~- 85 (178)
...+.|.|-+.|+. ....|.+.|++||.|.+.. +..+. .......+-.|.|.++.+|.+||..+|..+.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 34567999999998 5577889999999987664 10100 011344799999999999999999999999885
Q ss_pred EEEEeecC
Q psy2871 86 VVETKRAV 93 (178)
Q Consensus 86 ~i~v~~~~ 93 (178)
.+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 55566663
No 155
>KOG2314|consensus
Probab=97.84 E-value=6.4e-05 Score=60.87 Aligned_cols=61 Identities=25% Similarity=0.353 Sum_probs=51.1
Q ss_pred cccEEEEeCCCcccH-------HHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 106 TVKKMFVGGLKDQEE-------DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 106 ~~~~l~v~~l~~~t~-------~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
-...++|.|+|.+-. .-|..+|+++|++.+..++.+.. |..+||.|++|++..+|+.|++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHh
Confidence 346789999997332 23677899999999999998875 44899999999999999999998
No 156
>KOG0106|consensus
Probab=97.79 E-value=1.8e-05 Score=57.28 Aligned_cols=60 Identities=28% Similarity=0.546 Sum_probs=51.1
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccc
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDR 175 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~ 175 (178)
..+||+.+|. ..+.+|..+|..||.+..+.+.. ||+||+|.+.-+|..|+-. ++..|+|-
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e 63 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGE 63 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecce
Confidence 4689999999 99999999999999998887643 4899999999999999988 55555554
No 157
>KOG1855|consensus
Probab=97.77 E-value=8.4e-05 Score=58.30 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=57.2
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeC---CCC--CCc--------eeEEEEEECCHHHHHHHHHhc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTN---KET--GAK--------RGFAFIEFNDYDVVDKIVLSK 168 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~---~~~--~~~--------~g~afv~F~~~~~a~~a~~~~ 168 (178)
...++++|.+.|||. -..|-|.++|+.+|.|+.|+|... +.+ +.+ +-+|+|+|+..++|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 345789999999999 888999999999999999999877 222 111 457999999999999999886
Q ss_pred Ceec
Q psy2871 169 ITLL 172 (178)
Q Consensus 169 ~~~~ 172 (178)
+..-
T Consensus 307 ~~e~ 310 (484)
T KOG1855|consen 307 NPEQ 310 (484)
T ss_pred chhh
Confidence 5443
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.76 E-value=9.4e-05 Score=56.45 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=61.4
Q ss_pred CCeEEEcCCCCCCCHHH------HHHHHhhcCceeEEEEeeCCCC-CCccceE--EEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 16 LRKVFIGGLDYRTTDES------LQAFFEQWGEIVDVVVMKDPIT-KRSRGFG--FITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~------l~~~f~~~G~i~~~~~~~~~~~-~~~~g~a--fV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
..-+||-+||+.+-.++ =.++|.+||.|..|.+.+.... +-..+.+ ||.|.+.++|.+|+.. ++..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34589999999986665 2578999999999887665422 2122223 9999999999999999 99999999
Q ss_pred EEEEeecCCC
Q psy2871 86 VVETKRAVPR 95 (178)
Q Consensus 86 ~i~v~~~~~~ 95 (178)
.|+......+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9987765443
No 159
>KOG0129|consensus
Probab=97.71 E-value=0.00019 Score=57.60 Aligned_cols=69 Identities=30% Similarity=0.440 Sum_probs=62.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHh-hcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFE-QWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 77 (178)
.+..-+..||||||+||..++.++|..+|. -||.|.-+-|=.|+.-+..+|-|-|.|.+..+-.+|+.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 344567799999999999999999999999 699999999888876788999999999999999999987
No 160
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.54 E-value=0.00049 Score=42.08 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=40.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 77 (178)
-.+..+|. .|+.+...||.++|++||.|.-.| +.+ ..|||...+.+.|..++..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsW-i~d-------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSW-IND-------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEE-ECT-------TEEEEEECCCHHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEE-EcC-------CcEEEEeecHHHHHHHHHH
Confidence 34456665 999999999999999999986555 444 4899999999999998876
No 161
>KOG4307|consensus
Probab=97.51 E-value=0.00046 Score=57.41 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
...+.|-+.|+|.+++-+||.++|..|-.+..-..++....|.-.|-|.|.|++.++|.+|... ++..|..+.+.+.
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3456899999999999999999999996554333334344789999999999999999999998 7788888877664
No 162
>KOG3152|consensus
Probab=97.46 E-value=8e-05 Score=54.71 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=57.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCC--------CCcc----ceEEEEeCCHHHHHHHHhc-CCcee
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT--------KRSR----GFGFITYSEAKMVDDAMSN-RPHNI 82 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~--------~~~~----g~afV~f~~~~~a~~a~~~-~~~~~ 82 (178)
.-.||+++|||..+..-|+++|+.||.|-.|.+.+.... +.++ .-|+|+|.+...|..+-+. ++..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 346999999999999999999999999999999876644 2222 2288999999999988887 66666
Q ss_pred cCeE
Q psy2871 83 DGRV 86 (178)
Q Consensus 83 ~g~~ 86 (178)
.|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 6653
No 163
>KOG1996|consensus
Probab=97.44 E-value=0.00036 Score=52.40 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=43.8
Q ss_pred HHHHHHHhhccCceeEEEeeeCCCCCCceeE-EEEEECCHHHHHHHHHhcCeeccccc
Q psy2871 120 EDDLREYFSQFGTIESVNMVTNKETGAKRGF-AFIEFNDYDVVDKIVLSKITLLLDRR 176 (178)
Q Consensus 120 ~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~-afv~F~~~~~a~~a~~~~~~~~~g~~ 176 (178)
+.+++..+++||+|.++.|+........... .||+|+..++|.+|+-.+|+.+.|.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr 357 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR 357 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce
Confidence 4578889999999999999887543333222 79999999999999999555555544
No 164
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.40 E-value=0.0017 Score=37.60 Aligned_cols=53 Identities=17% Similarity=0.469 Sum_probs=43.0
Q ss_pred ccEEEEeCCCcccHHHHHHHhhcc----CceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 107 VKKMFVGGLKDQEEDDLREYFSQF----GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 107 ~~~l~v~~l~~~t~~~l~~~f~~~----G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
...|+|.|+..++.++|+.+|..| + ...+.=..|. -|-|-|.+.+.|.+||.+
T Consensus 5 peavhirGvd~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGVDELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcCCCCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 457999999889999999999998 3 3344444443 388999999999999975
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.40 E-value=0.00038 Score=53.26 Aligned_cols=69 Identities=19% Similarity=0.400 Sum_probs=50.4
Q ss_pred cEEEEeCCCc-ccHHH----H--HHHhhccCceeEEEeeeCCCC-C-CceeE-EEEEECCHHHHHHHHHh-cCeeccccc
Q psy2871 108 KKMFVGGLKD-QEEDD----L--REYFSQFGTIESVNMVTNKET-G-AKRGF-AFIEFNDYDVVDKIVLS-KITLLLDRR 176 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~----l--~~~f~~~G~v~~~~i~~~~~~-~-~~~g~-afv~F~~~~~a~~a~~~-~~~~~~g~~ 176 (178)
.-+||.+|+. +..|+ | .++|.+||+|.+|.+-+...+ . ...++ .||.|.+.++|++|+.. .+..++|+-
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4578999987 76665 2 467999999999988655311 1 11223 39999999999999999 666677764
No 166
>KOG4849|consensus
Probab=97.36 E-value=0.00026 Score=54.34 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
+-...++||+||-+-+|+++|.+.....| .+.+++++.+..+|.++|||+|...+....+..|+. ....+.|..
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 33456799999999999999999888754 567888899998999999999999999999999987 455666643
No 167
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.34 E-value=0.0014 Score=40.16 Aligned_cols=60 Identities=18% Similarity=0.380 Sum_probs=38.8
Q ss_pred cEEEEeCCCc-ccHH----HHHHHhhccCc-eeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 108 KKMFVGGLKD-QEED----DLREYFSQFGT-IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~----~l~~~f~~~G~-v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..|+|.|||. .... -|++++..+|. |..+. + +-|+|+|.+.+.|.+|.+. .+..+.|.+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------G---GTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------C---CEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 3689999998 5543 46777778875 65543 1 2599999999999999998 7777778765
No 168
>KOG1995|consensus
Probab=97.32 E-value=0.00035 Score=53.72 Aligned_cols=73 Identities=26% Similarity=0.377 Sum_probs=61.4
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCcee--------EEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIE--------SVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~--------~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
....++||-++|+ +++.+|..+|.++|.|. .|.+..+..++.+++-|.|.|++..+|+.|+.- .+..++|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3456899999999 99999999999999773 356667778899999999999999999999987 6666666
Q ss_pred ccc
Q psy2871 175 RRV 177 (178)
Q Consensus 175 ~~v 177 (178)
..|
T Consensus 144 n~i 146 (351)
T KOG1995|consen 144 NTI 146 (351)
T ss_pred CCc
Confidence 543
No 169
>KOG4849|consensus
Probab=97.19 E-value=0.00048 Score=52.92 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=59.6
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccC--ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhc-Ceecccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSK-ITLLLDR 175 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G--~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~-~~~~~g~ 175 (178)
.....+||+||-| +|++||.+.....| .+..++++.+..+|+++|||+|-..+..+.++.++.+ -.++.|+
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 3456799999999 88999999888776 4788999999999999999999999999999998873 3455554
No 170
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.16 E-value=0.0046 Score=35.85 Aligned_cols=53 Identities=15% Similarity=0.360 Sum_probs=44.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc---CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQW---GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~---G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 77 (178)
..|+|+|+. +.+.++|+.+|..| .....+.++.|. .|-|.|.+.+.|.+||..
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 479999985 47779999999988 234578888885 799999999999999864
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.14 E-value=0.0037 Score=42.58 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=45.5
Q ss_pred HHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCCCcc
Q psy2871 32 SLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDE 97 (178)
Q Consensus 32 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~~~~ 97 (178)
+|.+.|..||++.=+++..+ --+|.|.+-++|.+|+..++..+.|+.|+|....+...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHH
Confidence 77778889999887777653 57999999999999999999999999999997766554
No 172
>KOG0115|consensus
Probab=97.12 E-value=0.0016 Score=48.03 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=65.4
Q ss_pred CCceecCeEEEEeecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEEC
Q psy2871 78 RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 156 (178)
Q Consensus 78 ~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~ 156 (178)
++....++.++|.++.. . .|+|.|++. ++.+.+.+.|+.||+|....+..|. .+...+-++|+|.
T Consensus 15 d~~~~~~~~lr~rfa~~-a------------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 15 DGRFPKGRSLRVRFAMH-A------------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFA 80 (275)
T ss_pred CCCCCCCCceEEEeecc-c------------eEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhh
Confidence 56777899999998865 2 499999999 9999999999999999887766664 4677778999999
Q ss_pred CHHHHHHHHHhc
Q psy2871 157 DYDVVDKIVLSK 168 (178)
Q Consensus 157 ~~~~a~~a~~~~ 168 (178)
..-+|..|+..+
T Consensus 81 ~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 81 KKPNARKAARRC 92 (275)
T ss_pred cchhHHHHHHHh
Confidence 999999998874
No 173
>KOG2314|consensus
Probab=97.02 E-value=0.0013 Score=53.65 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=59.6
Q ss_pred CCCCCCeEEEcCCCCCCC------HHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecC
Q psy2871 12 EPESLRKVFIGGLDYRTT------DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (178)
.+--...|.|.|+|---. ..-|..+|+++|++..+.+..+..+| .+||.|++|.+..+|+.|++. +|..++.
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 334456788999875322 12456778999999999999888555 999999999999999999999 7766654
Q ss_pred -eEEEEe
Q psy2871 85 -RVVETK 90 (178)
Q Consensus 85 -~~i~v~ 90 (178)
+...|.
T Consensus 133 nHtf~v~ 139 (698)
T KOG2314|consen 133 NHTFFVR 139 (698)
T ss_pred cceEEee
Confidence 455554
No 174
>KOG3152|consensus
Probab=96.82 E-value=0.00091 Score=49.30 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=56.6
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCC--------CCcee----EEEEEECCHHHHHHHHHh-cCee
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET--------GAKRG----FAFIEFNDYDVVDKIVLS-KITL 171 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~--------~~~~g----~afv~F~~~~~a~~a~~~-~~~~ 171 (178)
....+|+++||. +.-.-|+++|+.||.|-.+.+.+...+ +.+.+ -++|+|.+...|+++.+. +|.-
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 456899999999 999999999999999999988776544 22222 278999999999999888 5555
Q ss_pred ccccc
Q psy2871 172 LLDRR 176 (178)
Q Consensus 172 ~~g~~ 176 (178)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 65553
No 175
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.76 E-value=0.0071 Score=40.91 Aligned_cols=66 Identities=26% Similarity=0.316 Sum_probs=49.0
Q ss_pred CCCcccEEEEeCCCc--ccHHHHHHH---hhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccc
Q psy2871 103 ANATVKKMFVGGLKD--QEEDDLREY---FSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDR 175 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~--~t~~~l~~~---f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~ 175 (178)
.++++.+|.|+=+.. -..+|++++ ++.||+|.++...-.+ -|.|.|++..+|.+|+.+.....-|.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~pgt 152 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRAPGT 152 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCCCCc
Confidence 456788999988765 345555554 6789999998874333 59999999999999999855544443
No 176
>KOG4285|consensus
Probab=96.65 E-value=0.0074 Score=45.66 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=49.8
Q ss_pred ccEEEEeCCCcccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccc
Q psy2871 107 VKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDR 175 (178)
Q Consensus 107 ~~~l~v~~l~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~ 175 (178)
..=+-|.+.|.-.-.-|..+|++||.|.+.....+ + .|-+|+|.+..+|++||..++..|+|.
T Consensus 197 D~WVTVfGFppg~~s~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KALskng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSIVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKALSKNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccchhHHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhhhhcCeeeccc
Confidence 34466777777566678899999999988765422 2 289999999999999999988888775
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.64 E-value=0.0076 Score=41.07 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=41.8
Q ss_pred HHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 121 DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 121 ~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
.+|.+.|..||++.-+++.-+. -+|.|.+-++|.+|+...+..++|+.+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g~~l 99 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNGRTL 99 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETTEEE
T ss_pred HHHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECCEEE
Confidence 4778889999999988886542 789999999999999999999999875
No 178
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.53 E-value=0.0095 Score=40.30 Aligned_cols=77 Identities=12% Similarity=0.152 Sum_probs=57.0
Q ss_pred CCCCCCCCeEEEcCCCCCCC-HHH---HHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCe
Q psy2871 10 CTEPESLRKVFIGGLDYRTT-DES---LQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGR 85 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t-~~~---l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 85 (178)
++.+.+-.+|.|+=|..+.. .+| +...++.||+|.++.+.-. ..|.|.|++..+|..|+.+-+....|.
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgt 152 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGT 152 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCc
Confidence 33455566788877777763 334 4444667999999987643 489999999999999999955577788
Q ss_pred EEEEeecC
Q psy2871 86 VVETKRAV 93 (178)
Q Consensus 86 ~i~v~~~~ 93 (178)
.+...|..
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 88877754
No 179
>KOG2202|consensus
Probab=96.42 E-value=0.0012 Score=48.66 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=44.4
Q ss_pred HHHHHHhh-ccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 121 DDLREYFS-QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 121 ~~l~~~f~-~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
|++...++ +||+|+++.+-.+. ...-.|=++|.|...++|.+|++. +|..+.|++|
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi 140 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPI 140 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcc
Confidence 56777777 89999998775543 345566799999999999999999 7777778775
No 180
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.33 E-value=0.072 Score=34.74 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=51.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhc-CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQW-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (178)
.........+.+...|..++.+.|..+.+.+ ..|..++++++... ++=.+++.|.+.+.|....+. ||..++
T Consensus 7 ~~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 7 LPDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344445566666666666767777666665 66888999997643 444899999999999999887 665543
No 181
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=96.27 E-value=0.0088 Score=37.28 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=47.6
Q ss_pred EEEEeCCHHHHHHHHhc--CCceecCeEEEEeecCCCccc---CCCCCCCcccEEEEeCCCc-ccHHHHHHHhh
Q psy2871 61 GFITYSEAKMVDDAMSN--RPHNIDGRVVETKRAVPRDEI---GKPEANATVKKMFVGGLKD-QEEDDLREYFS 128 (178)
Q Consensus 61 afV~f~~~~~a~~a~~~--~~~~~~g~~i~v~~~~~~~~~---~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~ 128 (178)
|+|.|.+..-|+..++. ....+.+..+.|....-.... -.-......+++.|.|+|+ +.+++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999998 456667766666533221111 1112335668899999999 99999987654
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.20 E-value=0.11 Score=33.99 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=45.0
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccC-ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecc
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLL 173 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~ 173 (178)
...+.+..+|. ++.++|..+...+- .|..+++.++.. .++-.++++|.+.++|+.-... +|..++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34455555566 66667766665554 478899988754 3444689999999999999988 444443
No 183
>KOG4676|consensus
Probab=96.15 E-value=0.0093 Score=46.71 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=54.8
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCC---CCCceeEEEEEECCHHHHHHHHHhcCeecccc
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKE---TGAKRGFAFIEFNDYDVVDKIVLSKITLLLDR 175 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~ 175 (178)
..|.|.||.. .|.++++.+|...|+|..+++..... -+...-.|||.|-+..++..|-..-|..|.|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdr 79 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDR 79 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeee
Confidence 4799999988 99999999999999999999987532 23335589999999999888877766655543
No 184
>KOG1855|consensus
Probab=96.13 E-value=0.0097 Score=47.11 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=55.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeC---CCCC--C--------ccceEEEEeCCHHHHHHHHhcC
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKD---PITK--R--------SRGFGFITYSEAKMVDDAMSNR 78 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~---~~~~--~--------~~g~afV~f~~~~~a~~a~~~~ 78 (178)
++-.+|+|.+-|||.+-.-+-|.++|+.+|.|..|+|+.- +.+. . .+-.|+|+|...+.|.+|.+..
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3457899999999999999999999999999999999764 2221 1 2446999999999999999874
No 185
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=96.08 E-value=0.018 Score=39.62 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=79.4
Q ss_pred EEEcCC-C-CCCCHHHHHHHHhh-cCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCCC
Q psy2871 19 VFIGGL-D-YRTTDESLQAFFEQ-WGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95 (178)
Q Consensus 19 l~v~nl-p-~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~~ 95 (178)
..|+.+ . ...+-..|.+.+.. ++.-..+.+..- ..++..+.|.+.+++.+++......+.+..+.+....+.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 334444 2 33566777777664 343333333332 237999999999999999999888888988888877654
Q ss_pred cccCCCCCCCcccEEEEeCCCc--ccHHHHHHHhhccCceeEEEee
Q psy2871 96 DEIGKPEANATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMV 139 (178)
Q Consensus 96 ~~~~~~~~~~~~~~l~v~~l~~--~t~~~l~~~f~~~G~v~~~~i~ 139 (178)
............-=+.|.|||. ++++-++.+.+.+|++..+...
T Consensus 93 ~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 93 FNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred ccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 4322222222333467889998 8999999999999999877654
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.06 E-value=0.051 Score=33.37 Aligned_cols=53 Identities=17% Similarity=0.306 Sum_probs=37.9
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
..+..++. .|. |...||.++|+.||.|.-.=| .+. -|||...+.+.|..|+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-NDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CTT-------EEEEEECCCHHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cCC-------cEEEEeecHHHHHHHHHH
Confidence 34566776 566 999999999999999855443 121 499999999999988876
No 187
>KOG0112|consensus
Probab=95.94 E-value=0.012 Score=50.70 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=63.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecC--eEEE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVE 88 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~i~ 88 (178)
.....+.+++++|++.+....+...|..||.|..|.+-.. .-||||.|.+...++.|++. .+.-+.+ +.+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4566889999999999999999999999999998876543 36999999999999999987 5555544 5677
Q ss_pred EeecCC
Q psy2871 89 TKRAVP 94 (178)
Q Consensus 89 v~~~~~ 94 (178)
|..+.+
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 776544
No 188
>KOG2202|consensus
Probab=95.77 E-value=0.0049 Score=45.56 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=49.3
Q ss_pred HHHHHHHh-hcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 31 ESLQAFFE-QWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 31 ~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
++|...++ +||+|+.+.+..+. .-.-.|=+||.|...++|++|++. ++.-+.|++|....+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34445555 78999999776654 344668899999999999999999 8899999999887654
No 189
>KOG2416|consensus
Probab=95.69 E-value=0.013 Score=48.23 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=60.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHh-hcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCcee---c
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFE-QWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI---D 83 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~---~ 83 (178)
.+.-...++.|||.||=.-.|.-+|+.++. ..|.|...||=.- +..|||.|.+.++|...... ++..+ +
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 333556688999999999999999999999 5677888876443 35899999999999999888 66555 3
Q ss_pred CeEEEEeec
Q psy2871 84 GRVVETKRA 92 (178)
Q Consensus 84 g~~i~v~~~ 92 (178)
.+.|.+.+.
T Consensus 511 PK~L~adf~ 519 (718)
T KOG2416|consen 511 PKHLIADFV 519 (718)
T ss_pred CceeEeeec
Confidence 456666554
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.67 E-value=0.027 Score=39.98 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=41.8
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhc-cCce---eEEEeeeCCC--CCCceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQ-FGTI---ESVNMVTNKE--TGAKRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~-~G~v---~~~~i~~~~~--~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
...+|.|++||. +|++++.+.+.. ++.- .++.-..... ......-|||.|.+.+++..-... ++..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 345899999999 999999997776 6655 4444223321 111223499999999998877777 5555543
No 191
>KOG4285|consensus
Probab=95.63 E-value=0.11 Score=39.51 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=59.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCe-EEEEeecCC
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGR-VVETKRAVP 94 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~-~i~v~~~~~ 94 (178)
..=|.|-++|+... .-|..+|++||.|.+...- ..-.|-+|.|.+.-+|++||.+++..|+|. .|-|.++..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 44578889888766 5667899999999776543 223699999999999999999999999885 577887766
Q ss_pred Cccc
Q psy2871 95 RDEI 98 (178)
Q Consensus 95 ~~~~ 98 (178)
+...
T Consensus 270 ksvi 273 (350)
T KOG4285|consen 270 KSVI 273 (350)
T ss_pred HHHh
Confidence 5443
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.58 E-value=0.018 Score=40.88 Aligned_cols=81 Identities=11% Similarity=-0.017 Sum_probs=45.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh-cCce---eEEEEeeCC--CCCCccceEEEEeCCHHHHHHHHhc-CCceecC--
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQ-WGEI---VDVVVMKDP--ITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG-- 84 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i---~~~~~~~~~--~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g-- 84 (178)
.....|-|++|||.+|++++.+.+++ ++.- ..+.-.... .......-|||.|.+.+++...... +|..+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34558999999999999999997776 5554 222211111 1112334599999999998887776 6655532
Q ss_pred ---eEEEEeecCC
Q psy2871 85 ---RVVETKRAVP 94 (178)
Q Consensus 85 ---~~i~v~~~~~ 94 (178)
..-.|..+..
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2344555543
No 193
>KOG0115|consensus
Probab=95.50 E-value=0.018 Score=42.73 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=52.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 77 (178)
..|+|.||++-++-+.+.+.|+.||+|....+..|- .++..+-++|.|...-.|..|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHH
Confidence 579999999999999999999999999887777765 667888999999988888888775
No 194
>KOG1996|consensus
Probab=95.37 E-value=0.089 Score=39.93 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcCceeEEEEeeCCCCCC-ccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 30 DESLQAFFEQWGEIVDVVVMKDPITKR-SRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 30 ~~~l~~~f~~~G~i~~~~~~~~~~~~~-~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
++++.....+||.|..|.|+..++... ..---||+|...++|.+|+-. +|..+.|+.++-.+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 346777788999999999888764332 222479999999999999988 899999998775544
No 195
>KOG2135|consensus
Probab=95.25 E-value=0.023 Score=45.65 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRT-TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~-t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 92 (178)
.+.+.|-+.-.|+.. +-++|...|.+||.|..|.+-.. .-.|.|.|.+..+|-.|....+..|+++.|+|.|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEe
Confidence 344556666666666 56799999999999999987443 24799999999999999999999999999999999
Q ss_pred CCCcc
Q psy2871 93 VPRDE 97 (178)
Q Consensus 93 ~~~~~ 97 (178)
.+...
T Consensus 444 nps~~ 448 (526)
T KOG2135|consen 444 NPSPV 448 (526)
T ss_pred cCCcc
Confidence 88553
No 196
>KOG0804|consensus
Probab=95.00 E-value=0.14 Score=41.14 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=58.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhc-CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQW-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (178)
++.+++.|+|-.+|...+..||..+...+ ..|.+++++++...++ =..+|.|.+.++|....+. +|..+.
T Consensus 70 ~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnr--ymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 70 NASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNR--YMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred cCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCce--EEEEEEeccchhHHHHHHHcCCCcCC
Confidence 34448899999999999999999998865 6689999999765443 3799999999999999988 776554
No 197
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.00 E-value=0.2 Score=35.84 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=44.9
Q ss_pred CHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-C--CceecCeEEEEeecCCCc
Q psy2871 29 TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDGRVVETKRAVPRD 96 (178)
Q Consensus 29 t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~--~~~~~g~~i~v~~~~~~~ 96 (178)
..+.|+++|..++.+.....++.- +-..|.|.+.+.|.+|... + +..+.|..+++.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999998887777643 5789999999999999998 6 788999999998875443
No 198
>KOG0804|consensus
Probab=94.82 E-value=0.23 Score=39.88 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=51.8
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccC-ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeec
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLL 172 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~ 172 (178)
++.|+|-.+|. ++--||..+...+- .|.+++++++.... +=.++|.|.+.++|+...+. +|..|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcC
Confidence 78999999999 99999999988654 48999999965432 32589999999999999988 44433
No 199
>KOG2068|consensus
Probab=94.56 E-value=0.022 Score=43.80 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=49.1
Q ss_pred cEEEEeCCCc-ccHHHHH---HHhhccCceeEEEeeeCCC---CCCceeEEEEEECCHHHHHHHHHh-cCeeccccc
Q psy2871 108 KKMFVGGLKD-QEEDDLR---EYFSQFGTIESVNMVTNKE---TGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRR 176 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~---~~f~~~G~v~~~~i~~~~~---~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~ 176 (178)
+-++|.+++. +.++.+. .+|.+||.|.++.+..+.. ......-++|.|+..++|+.|+.. .+..+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 4568888887 6655443 4588999999999888652 111122489999999999999998 555555543
No 200
>KOG2193|consensus
Probab=94.41 E-value=0.04 Score=43.81 Aligned_cols=65 Identities=23% Similarity=0.382 Sum_probs=46.9
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCee--ccccccC
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITL--LLDRRVE 178 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~--~~g~~ve 178 (178)
..++++||.. .+..+|..+|..- ++.....=-...|||||.+.+...|.+|++.+++. +.|+++|
T Consensus 2 nklyignL~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 4689999988 9999999999864 11111111123469999999999999999996554 4466654
No 201
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.27 E-value=1.8 Score=33.02 Aligned_cols=153 Identities=10% Similarity=0.160 Sum_probs=97.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCC-------CCCccceEEEEeCCHHHHHHHHhc-------CCc
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPI-------TKRSRGFGFITYSEAKMVDDAMSN-------RPH 80 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~-------~~~~~g~afV~f~~~~~a~~a~~~-------~~~ 80 (178)
-+|.|...|+..+++--.+..-|..||+|++|+++.+.. .........+.|-+.+.+-..... -..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 367799999999999888889999999999999998761 113446789999998886554432 123
Q ss_pred eecCeEEEEeecCCCccc----C----------------CCCCCCcccEEEEeCCCcc-cHHHHHHHhh---ccC----c
Q psy2871 81 NIDGRVVETKRAVPRDEI----G----------------KPEANATVKKMFVGGLKDQ-EEDDLREYFS---QFG----T 132 (178)
Q Consensus 81 ~~~g~~i~v~~~~~~~~~----~----------------~~~~~~~~~~l~v~~l~~~-t~~~l~~~f~---~~G----~ 132 (178)
.+....+.+.+..-.-.. + .-......|.|.|..-..+ +++-+.+.+. .-+ -
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEE
Confidence 344555555543210000 0 0111235577888776554 3333333321 222 2
Q ss_pred eeEEEeeeCCC--CCCceeEEEEEECCHHHHHHHHHh
Q psy2871 133 IESVNMVTNKE--TGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 133 v~~~~i~~~~~--~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
++.|.++.... ..=+.+||.+.|=+..-|...+.-
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dY 210 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDY 210 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHH
Confidence 56777766533 234477999999999988887755
No 202
>KOG2591|consensus
Probab=94.27 E-value=0.25 Score=40.74 Aligned_cols=65 Identities=8% Similarity=0.105 Sum_probs=50.2
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhc--cCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcC---eecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQ--FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKI---TLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~--~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~---~~~~g~~v 177 (178)
....+.++-||. .-.|+++.+|.. +-++.++.+..+.. =||.|++..+|+.|...+. .+|.|++|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 334677899999 778999999984 77888888866542 6899999999999987733 35556654
No 203
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.71 E-value=0.62 Score=27.40 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 27 RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 27 ~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
.++-++++..+..|+- .++..++ .|| ||.|.+..+|.+|... ++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999854 3344443 255 9999999999999998 777776666543
No 204
>KOG2416|consensus
Probab=93.17 E-value=0.089 Score=43.60 Aligned_cols=62 Identities=11% Similarity=0.213 Sum_probs=47.1
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhc-cCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCee
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQ-FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITL 171 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~-~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~ 171 (178)
...++.|+|.||-- +|.-+|+.++.+ .|.|...-| |. -+.+|||.|.+.++|.....+ +|..
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~ 505 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQ 505 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccc
Confidence 34578999999988 999999999995 555666522 21 122699999999999998887 4443
No 205
>KOG2068|consensus
Probab=92.07 E-value=0.067 Score=41.23 Aligned_cols=79 Identities=28% Similarity=0.456 Sum_probs=58.6
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhhcCceeEEEEeeCCC--C-CCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 17 RKVFIGGLDYRTTDESLQ---AFFEQWGEIVDVVVMKDPI--T-KRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~---~~f~~~G~i~~~~~~~~~~--~-~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
+-+||-+||...-.+.+. ..|.+||.|..+.+..+.. . -...-.++|.|...++|..|+.. ++..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457889999887555443 3577889999998887662 1 11223489999999999999999 889999988666
Q ss_pred eecCCC
Q psy2871 90 KRAVPR 95 (178)
Q Consensus 90 ~~~~~~ 95 (178)
.....+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 555443
No 206
>KOG2591|consensus
Probab=91.80 E-value=0.51 Score=39.07 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=53.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh--cCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc---CCceecCeEEE
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQ--WGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRVVE 88 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~i~ 88 (178)
+.+-+.++-||..+..++|+.+|+. +.++.+|.+-.+. -=||.|.+..+|+.|.+. --..|.|++|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3445778999999999999999984 7889999887764 349999999999999876 34566777664
No 207
>KOG4574|consensus
Probab=90.28 E-value=0.25 Score=42.78 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=58.6
Q ss_pred EEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CC--ceecCeEEEEeecCCCc
Q psy2871 20 FIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP--HNIDGRVVETKRAVPRD 96 (178)
Q Consensus 20 ~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~--~~~~g~~i~v~~~~~~~ 96 (178)
++-|.+-..+..-|..+|+.||.|.++|..++- ..|.|+|.+.+.|..|++. +| ....|-+.+|.++...+
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 344445557778899999999999999998875 5899999999999999998 43 44567788888887766
Q ss_pred ccC
Q psy2871 97 EIG 99 (178)
Q Consensus 97 ~~~ 99 (178)
+..
T Consensus 376 ~~e 378 (1007)
T KOG4574|consen 376 MYE 378 (1007)
T ss_pred ccc
Confidence 543
No 208
>KOG4483|consensus
Probab=87.38 E-value=4.1 Score=32.63 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=52.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCce
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHN 81 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~ 81 (178)
.++.+=.+.|-|-++|.....+||...|+.|+. --+|+++-+. .||..|.+...|..||...+..
T Consensus 385 l~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~ 450 (528)
T KOG4483|consen 385 LRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDW 450 (528)
T ss_pred CCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCce
Confidence 345556788999999999999999999999844 4577787775 8999999999999999874333
No 209
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=85.00 E-value=3.2 Score=24.01 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.3
Q ss_pred HHHHHHHhhcCceeEEEEeeCC
Q psy2871 31 ESLQAFFEQWGEIVDVVVMKDP 52 (178)
Q Consensus 31 ~~l~~~f~~~G~i~~~~~~~~~ 52 (178)
.+|+++|+.+|+|.-+.+....
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5899999999999988775544
No 210
>KOG4574|consensus
Probab=85.00 E-value=0.45 Score=41.26 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=43.8
Q ss_pred EEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 109 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 109 ~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
+..+.+.+- .+..-|.-+|++||.|.....+++-+ .|.|+|...++|..|+.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dA 353 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDA 353 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhh
Confidence 344445555 67778999999999999999888754 699999999999999988
No 211
>KOG2135|consensus
Probab=84.46 E-value=0.43 Score=38.66 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=44.1
Q ss_pred ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 118 QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 118 ~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
-+-++|-..|-+||+|..|.+-... -.|.|+|.+..+|-.|-....-.|+|+.+
T Consensus 385 nt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~i 438 (526)
T KOG2135|consen 385 NTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFI 438 (526)
T ss_pred chHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCcee
Confidence 3568899999999999999885542 25999999999998888887777877754
No 212
>KOG2253|consensus
Probab=83.05 E-value=1.2 Score=37.53 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=50.1
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDR 175 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~ 175 (178)
.++..++||+++.. ++.+-++.....+|-|.+.+... |+|++|..+..+..|+.. ....++|+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 35567899999999 89999999999999887766543 799999999999999877 33334343
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.18 E-value=6.1 Score=28.30 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=37.2
Q ss_pred cHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-c--Ceeccccc
Q psy2871 119 EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-K--ITLLLDRR 176 (178)
Q Consensus 119 t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~--~~~~~g~~ 176 (178)
..+.|+++|..++.+.....++.-. -..|.|.+.++|.+|... + +..+.|..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~ 62 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKR 62 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCc
Confidence 4578999999999988877765421 388999999999999988 4 45566654
No 214
>KOG2318|consensus
Probab=79.72 E-value=9.9 Score=31.99 Aligned_cols=75 Identities=9% Similarity=0.224 Sum_probs=57.3
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CceeEEEEeeCCCC----------C---------------------
Q psy2871 12 EPESLRKVFIGGLDYR-TTDESLQAFFEQW----GEIVDVVVMKDPIT----------K--------------------- 55 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~i~~~~~~~~~~~----------~--------------------- 55 (178)
....+++|-|.|+.++ +...+|.-+|+.| |.|.+|.|.+...+ |
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3567899999999998 5888999999977 68888877553211 1
Q ss_pred ----------------CccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 56 ----------------RSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 56 ----------------~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
..-=||.|.|.+.+.|.+..+. .|..+....
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA 297 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc
Confidence 1223799999999999999998 787776543
No 215
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=77.59 E-value=11 Score=24.82 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=58.8
Q ss_pred CCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCCCcccCCCC
Q psy2871 23 GLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPE 102 (178)
Q Consensus 23 nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~~~~~~~~~ 102 (178)
=|||-++ .|-+.|+.=|+|.++..+....++ +|..-+.-.-..++|. |++...........+.
T Consensus 10 VlPPYTn--KLSDYfeSPGKI~svItvtqypdn--------------dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~g 72 (145)
T TIGR02542 10 VLPPYTN--KLSDYFESPGKIQSVITVTQYPDN--------------DALLYVHGTLEQVDGN-IRIGSGQTPASVRIQG 72 (145)
T ss_pred ecCCccc--hhhHHhcCCCceEEEEEEeccCCc--------------hhhheeeeehhhccCc-EEEccCCCcccEEEec
Confidence 3777765 578999999999988655432111 1111111111122333 5554332221111111
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhc---cCceeEEEeeeCCCCCCceeEEEEEECCH
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQ---FGTIESVNMVTNKETGAKRGFAFIEFNDY 158 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~---~G~v~~~~i~~~~~~~~~~g~afv~F~~~ 158 (178)
. +..+ -|..-|. +|-.++++.|.. |-.|+.-.+.++.-...+-..||.-|...
T Consensus 73 T-Psgn--nv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 73 T-PSGN--NVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred C-CCCC--ceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0 1111 1334466 899999999984 55555555555533333333677777544
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=76.97 E-value=12 Score=21.89 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=35.6
Q ss_pred ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccccc
Q psy2871 118 QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRR 176 (178)
Q Consensus 118 ~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~ 176 (178)
++-++++.-+.+|+ ... |..+++ | -||-|.+-++|.++... ++..+.+.+
T Consensus 12 ~~v~d~K~~Lr~y~-~~~--I~~d~t-G-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 12 VTVEDFKKRLRKYR-WDR--IRDDRT-G-----FYIVFNDSKEAERCFRAEDGTLFFTYR 62 (66)
T ss_pred ccHHHHHHHHhcCC-cce--EEecCC-E-----EEEEECChHHHHHHHHhcCCCEEEEEE
Confidence 78899999999994 333 333332 2 47999999999999998 555554443
No 217
>KOG2891|consensus
Probab=74.41 E-value=5.2 Score=30.46 Aligned_cols=39 Identities=26% Similarity=0.450 Sum_probs=30.4
Q ss_pred CCCcccEEEEeCCCc-c------------cHHHHHHHhhccCceeEEEeeeC
Q psy2871 103 ANATVKKMFVGGLKD-Q------------EEDDLREYFSQFGTIESVNMVTN 141 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~------------t~~~l~~~f~~~G~v~~~~i~~~ 141 (178)
+...+.++++.++|- | ++.-|+..|+.||.|..+.|+..
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 344567899999984 3 56779999999999988887654
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.31 E-value=16 Score=21.74 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHhhcCc-----eeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 27 RTTDESLQAFFEQWGE-----IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 27 ~~t~~~l~~~f~~~G~-----i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
.++..+|..+++..+. |-.|.+.. .|+||+-... .|..++.. ++..+.|+.++|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4678888888886533 44666655 3899988765 55666666 888999999998764
No 219
>KOG4483|consensus
Probab=73.60 E-value=14 Score=29.73 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=44.7
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCc-eeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~-v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
.-.+.|-|.++|. ...+||...|+.|+. --.|+-+-+. +||--|.+...|..||-.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3467899999999 889999999999975 3444444332 699999999999999876
No 220
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=69.60 E-value=12 Score=28.85 Aligned_cols=61 Identities=11% Similarity=0.308 Sum_probs=46.4
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCC-------CCCceeEEEEEECCHHHHHH
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKE-------TGAKRGFAFIEFNDYDVVDK 163 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~-------~~~~~g~afv~F~~~~~a~~ 163 (178)
.....|.|...|+.. ++--.+-..|.+||+|+++.++.+.. .....+...+.|-+.+.+-.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 334567788889987 88888999999999999999988761 12223468899988877543
No 221
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=68.18 E-value=2.3 Score=33.93 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=52.5
Q ss_pred CCCCeEEEcCCCCCCCHH--------HHHHHHhh--cCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHh
Q psy2871 14 ESLRKVFIGGLDYRTTDE--------SLQAFFEQ--WGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~--------~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 76 (178)
...|.+|..+.......+ ++...|.+ .+++..+...++..+..++|.-|++|+..+.+++.+.
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345677888877776555 88889987 6888889988888788899999999999999999885
No 222
>KOG4213|consensus
Probab=67.82 E-value=8.7 Score=27.33 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=44.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc-CceeEEEEeeCCCCC--CccceEEEEeCCHHHHHHHHhcCCceecCeEE
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQW-GEIVDVVVMKDPITK--RSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i 87 (178)
.|++|.+ .|+++|.++...- |.+..+.+.+.. ++ ..+|.-||.|.+.+.|.++++..........+
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el 179 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETEL 179 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHH
Confidence 4556665 5666666654422 688888776544 33 68899999999999999988875444433333
No 223
>KOG3424|consensus
Probab=66.26 E-value=33 Score=22.66 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHhh-c----CceeEEEEeeCCCCCCccceEEEEeCCHHHHHH
Q psy2871 27 RTTDESLQAFFEQ-W----GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73 (178)
Q Consensus 27 ~~t~~~l~~~f~~-~----G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (178)
.++.+||++-+.. | ..|.-.-+...-.+|++.|||.| |.+.+.|..
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4678888887764 3 33334444455567889999988 667666654
No 224
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.16 E-value=18 Score=23.85 Aligned_cols=38 Identities=26% Similarity=0.541 Sum_probs=22.3
Q ss_pred ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCH
Q psy2871 118 QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 158 (178)
Q Consensus 118 ~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~ 158 (178)
.+.+.|++.|..|..++ ++.+... ..++|++.|+|..-
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKD 66 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SS
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCC
Confidence 35578999999998775 4444443 36788999999643
No 225
>KOG4008|consensus
Probab=63.02 E-value=8 Score=28.74 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=31.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVV 47 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~ 47 (178)
+.....++||+-|+|...|++-|..+.+..|.+....
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4566778999999999999999999999998765543
No 226
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=60.67 E-value=6.9 Score=24.41 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHH
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFF 37 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f 37 (178)
...+.|+|.|.|||...++++|++..
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 34578999999999999999998764
No 227
>KOG2253|consensus
Probab=56.53 E-value=9.4 Score=32.56 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=54.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
...-++||+|+...+..+-++.+....|-|.++.... |+|-.|....-...|+.. ....++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456899999999999999999999999887654332 899999999999999988 55666666555443
No 228
>KOG2891|consensus
Probab=55.91 E-value=13 Score=28.36 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=26.4
Q ss_pred CeEEEcCCCCC------------CCHHHHHHHHhhcCceeEEEE
Q psy2871 17 RKVFIGGLDYR------------TTDESLQAFFEQWGEIVDVVV 48 (178)
Q Consensus 17 ~~l~v~nlp~~------------~t~~~l~~~f~~~G~i~~~~~ 48 (178)
-+||+-+||-. -+++-|+..|..||.|..+.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 37888888865 356789999999999998876
No 229
>KOG4410|consensus
Probab=53.42 E-value=51 Score=25.45 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=34.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCce-eEEEEeeCCCCCCccceEEEEeCCHH
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEI-VDVVVMKDPITKRSRGFGFITYSEAK 69 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~afV~f~~~~ 69 (178)
.-|+++|||.++.-.+|+..+...|-+ -++.+. -..|-||+-|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 349999999999999999999877543 223222 14477999997643
No 230
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=51.73 E-value=1.2e+02 Score=24.87 Aligned_cols=42 Identities=14% Similarity=0.373 Sum_probs=32.1
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHHhhc----CceeEEEEeeCC
Q psy2871 11 TEPESLRKVFIGGLDYR-TTDESLQAFFEQW----GEIVDVVVMKDP 52 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~i~~~~~~~~~ 52 (178)
.+...+++|-|-|+.++ +...+|.-.|+.| |++..+.|.+..
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 34567889999999987 5777888888876 777777776643
No 231
>PF14893 PNMA: PNMA
Probab=47.09 E-value=17 Score=28.60 Aligned_cols=57 Identities=7% Similarity=0.190 Sum_probs=34.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCceeEEEEeeCCC-CCCccceEEEEeCCH
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQ-WGEIVDVVVMKDPI-TKRSRGFGFITYSEA 68 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~-~~~~~g~afV~f~~~ 68 (178)
+.+..|.|.|.+||.++++++|++.+.. +-++-..++...-. -....--|+|+|...
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 4566789999999999999999998764 32222222222100 011234677777653
No 232
>COG5584 Predicted small secreted protein [Function unknown]
Probab=45.82 E-value=54 Score=20.80 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=25.4
Q ss_pred cCCCCCCCHHHHHHHHhhcCceeEEEEeeCCC
Q psy2871 22 GGLDYRTTDESLQAFFEQWGEIVDVVVMKDPI 53 (178)
Q Consensus 22 ~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~ 53 (178)
.|++++.--.-+++.|+++|+|...|+...+.
T Consensus 28 ~~is~e~alk~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 28 KNISRENALKVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred cccChhHHHHHHHHHhcccCCcceeEEEEecc
Confidence 35666666678889999999999999877663
No 233
>KOG4019|consensus
Probab=43.09 E-value=21 Score=25.55 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCCCCH-H----HHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe-EEE
Q psy2871 16 LRKVFIGGLDYRTTD-E----SLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR-VVE 88 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~-~----~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~-~i~ 88 (178)
..++.+.+++..+-. . ...++|.+|.+....++++ +.+.--|.|.+.+.|..|.-+ +...+.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 445778888777522 2 3344555565554444443 446778999999999999888 77888887 677
Q ss_pred EeecCCCcccCC--CCCCCcccEEEEeCCC--------------cccHHHHHHHhhccCceeEEEeeeCCCCC
Q psy2871 89 TKRAVPRDEIGK--PEANATVKKMFVGGLK--------------DQEEDDLREYFSQFGTIESVNMVTNKETG 145 (178)
Q Consensus 89 v~~~~~~~~~~~--~~~~~~~~~l~v~~l~--------------~~t~~~l~~~f~~~G~v~~~~i~~~~~~~ 145 (178)
..++.+...... ....+..-+-|+-.-| ...-.+|..-..+.|.-.+..++.+.+.+
T Consensus 84 ~yfaQ~~~~~~~~q~L~pP~~eKqFLISPPaSPPvgWe~~eda~P~~n~dLl~~iq~~~~~e~~eLhn~~e~~ 156 (193)
T KOG4019|consen 84 LYFAQPGHPESNSQYLQPPEPEKQFLISPPASPPVGWEPIEDAPPVVNQDLLAAIQKLGPGEKYELHNGTEKT 156 (193)
T ss_pred EEEccCCCccccccccCCCChhhceeecCCCCCCCCCcccccCCccccHHHHHHHHHhCccccccccCCCCCC
Confidence 776665443321 1111111222222211 11235666667777777777777665433
No 234
>KOG2295|consensus
Probab=42.91 E-value=4.7 Score=33.64 Aligned_cols=64 Identities=6% Similarity=0.010 Sum_probs=46.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeC---CHHHHHHHHhc
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS---EAKMVDDAMSN 77 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~---~~~~a~~a~~~ 77 (178)
.....|+++|++|.++-++|..+++.+..+..+-+....-..+...+.+|.|+ +...|.-||..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 33556899999999999999999998866655554443333456678889997 55666666654
No 235
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=40.22 E-value=23 Score=18.03 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHHhhcC
Q psy2871 26 YRTTDESLQAFFEQWG 41 (178)
Q Consensus 26 ~~~t~~~l~~~f~~~G 41 (178)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999998654
No 236
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=40.20 E-value=11 Score=22.24 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=19.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQ 39 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~ 39 (178)
..+|++|||++|..+-.+.=...+..
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k~ 50 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYKS 50 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHHH
Confidence 45789999999999876655555443
No 237
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=37.15 E-value=60 Score=20.89 Aligned_cols=24 Identities=17% Similarity=0.474 Sum_probs=17.4
Q ss_pred ccCceeEEEeeeCCCCCCceeEEEEEECCH
Q psy2871 129 QFGTIESVNMVTNKETGAKRGFAFIEFNDY 158 (178)
Q Consensus 129 ~~G~v~~~~i~~~~~~~~~~g~afv~F~~~ 158 (178)
+-|.+..|.....++ |+|++|++-
T Consensus 28 ~NGtv~qI~~Y~~pN------Yvf~~FEnG 51 (121)
T PF06919_consen 28 KNGTVAQIEQYMTPN------YVFMRFENG 51 (121)
T ss_pred CCCcEEEEeeecCCC------EEEEEecCC
Confidence 457788877766443 899999863
No 238
>KOG1295|consensus
Probab=37.04 E-value=43 Score=26.83 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEeeCCCC--CCccceEEEEeCCHHHHHHHHhc
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKDPIT--KRSRGFGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~ 77 (178)
...+-|..||+..++.++.+-..++.. +....+...... ....+.|||.|...++...-.+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~ 71 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRR 71 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhh
Confidence 446789999999999999988887632 222233211111 12356799999999985544443
No 239
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.37 E-value=1.1e+02 Score=18.96 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=37.0
Q ss_pred CCCc-ccHHHHHHHhhc-cC-ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhc
Q psy2871 114 GLKD-QEEDDLREYFSQ-FG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSK 168 (178)
Q Consensus 114 ~l~~-~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~ 168 (178)
-+.. .+..+++..++. || +|.++....... +.. -|+|.+....+|.......
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~K--KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEK--KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcE--EEEEEeCCCCcHHHHHHhh
Confidence 3455 888999999986 55 377777766542 222 4999999999988876553
No 240
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=35.91 E-value=81 Score=19.44 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=21.5
Q ss_pred ceeEEEEeeCCCCCCccceEEEEeCC
Q psy2871 42 EIVDVVVMKDPITKRSRGFGFITYSE 67 (178)
Q Consensus 42 ~i~~~~~~~~~~~~~~~g~afV~f~~ 67 (178)
+|.++++..-...++-++||=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46788888877678999999999987
No 241
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.79 E-value=45 Score=25.82 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=22.5
Q ss_pred EEEEeCCHHHHHHHHhcCCceecCeEEEEeecCCC
Q psy2871 61 GFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95 (178)
Q Consensus 61 afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~~ 95 (178)
|||.|++.++|+.|.+..... ..+.+.+..+.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~-~~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK-RPNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC-CCCCceEeeCCCc
Confidence 799999999999999862111 1234466555433
No 242
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=34.33 E-value=1e+02 Score=18.11 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=39.6
Q ss_pred HHHHHHHhhcCc-eeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCC
Q psy2871 31 ESLQAFFEQWGE-IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (178)
Q Consensus 31 ~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 94 (178)
++|.+.|...|- |..++-+....++.....-||+.....+...++.- ..+.+..+.|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I--k~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI--KTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh--HhhCCeEEEEecCCC
Confidence 467777776654 66776666665666677888888766554433333 445677788876543
No 243
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=33.29 E-value=1.1e+02 Score=19.38 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=29.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEee----CCCCCCccceEEEEeC
Q psy2871 19 VFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMK----DPITKRSRGFGFITYS 66 (178)
Q Consensus 19 l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~~~~----~~~~~~~~g~afV~f~ 66 (178)
.|+.+||+++-+.++...-..+.. ..++++.. ......+.|++.+.+.
T Consensus 13 a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 13 AFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 578999999988877666554322 22444443 2335567777777654
No 244
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=32.91 E-value=87 Score=19.82 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.1
Q ss_pred ceeEEEEeeCCCCCCccceEEEEeCC
Q psy2871 42 EIVDVVVMKDPITKRSRGFGFITYSE 67 (178)
Q Consensus 42 ~i~~~~~~~~~~~~~~~g~afV~f~~ 67 (178)
+|+++++.+-...|+-++||-|.|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788887766678899999999987
No 245
>KOG0156|consensus
Probab=31.21 E-value=1.1e+02 Score=25.72 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=43.2
Q ss_pred EEcCCCCCCCH---HHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEE
Q psy2871 20 FIGGLDYRTTD---ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (178)
Q Consensus 20 ~v~nlp~~~t~---~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i 87 (178)
.||||+.-... ..+..+=++||+|-.+++=.. -.|.-.+.+.|+.|+..++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 36777655544 344444457999998887432 377788999999999999888888875
No 246
>PF07872 DUF1659: Protein of unknown function (DUF1659); InterPro: IPR012454 This family consists of hypothetical bacterial proteins of unknown function
Probab=30.52 E-value=59 Score=17.49 Aligned_cols=26 Identities=15% Similarity=0.117 Sum_probs=20.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHH
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFF 37 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f 37 (178)
+.+-.++.-++|+-+++++++|+++-
T Consensus 20 Gkpi~k~ks~~nvk~~Atdedl~~Va 45 (47)
T PF07872_consen 20 GKPIFKTKSFSNVKPDATDEDLYDVA 45 (47)
T ss_pred CCEEEEeeehhhcCCCCCHHHHHHHh
Confidence 44456677789999999999998863
No 247
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=29.84 E-value=1.5e+02 Score=18.88 Aligned_cols=46 Identities=11% Similarity=0.232 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHhh-cCceeEEEE----eeCCCCCCccceEEEEeCCHHHHHH
Q psy2871 27 RTTDESLQAFFEQ-WGEIVDVVV----MKDPITKRSRGFGFITYSEAKMVDD 73 (178)
Q Consensus 27 ~~t~~~l~~~f~~-~G~i~~~~~----~~~~~~~~~~g~afV~f~~~~~a~~ 73 (178)
..+..+|+.-+.. |+.=.+.-+ ......+.+.|||.| |.+.+.+.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 3466677777663 543222222 223334577777777 666665543
No 248
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=29.81 E-value=78 Score=24.07 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=25.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEee
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMK 50 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~ 50 (178)
....|+|||++++..-+..++..--.+..+.++.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 3556999999999999999988654554555444
No 249
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=28.18 E-value=51 Score=17.98 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCCCCeEEE
Q psy2871 1 MKPRYDDSKCTEPESLRKVFI 21 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~v 21 (178)
|||+..+.+-....+.|.|.+
T Consensus 1 MKPRTGdGPlEv~kEgR~ivm 21 (51)
T PF11314_consen 1 MKPRTGDGPLEVTKEGRGIVM 21 (51)
T ss_pred CCCccCCCCcEEeecCceEEE
Confidence 677766666555555555543
No 250
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=27.88 E-value=1.5e+02 Score=17.98 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=37.3
Q ss_pred EEeCCCc-ccHHHHHHHhhc-cC-ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 111 FVGGLKD-QEEDDLREYFSQ-FG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 111 ~v~~l~~-~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
++..++. .+..+|+..++. || +|.++.....+. +.. -|||.+..-..|...-..
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~K--KA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEK--KAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cce--EEEEEECCCCcHHHHHHh
Confidence 4444555 999999999986 55 367776666542 222 499999988888776554
No 251
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=27.80 E-value=1.5e+02 Score=18.16 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHhh-c----CceeEEEEeeCCCCCCccceEEEEeCCHHHHHH
Q psy2871 26 YRTTDESLQAFFEQ-W----GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73 (178)
Q Consensus 26 ~~~t~~~l~~~f~~-~----G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (178)
+..+..+|++-+.. | ..|.-..+......+.+.|||.| |.+.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 34566778777764 3 23333445555555678888877 666665543
No 252
>KOG4410|consensus
Probab=27.76 E-value=1.3e+02 Score=23.35 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=34.5
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHH
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~ 159 (178)
...++++||+. .--.||+..+.+.|-+ ...+... .+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 45799999998 8889999999887543 3334332 34456999997654
No 253
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=27.11 E-value=1.6e+02 Score=18.81 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=28.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCH
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEA 68 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~ 68 (178)
.-+||++++..+-+.--..+-+.++.-.-+-+.. ++..+||+|-.+.+.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~---~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWA---TNTESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEc---CCCCCCcEEEecCCC
Confidence 3589999888877654444444454422222222 234459998877653
No 254
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=26.55 E-value=1.7e+02 Score=18.19 Aligned_cols=47 Identities=26% Similarity=0.423 Sum_probs=28.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeC
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS 66 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~ 66 (178)
.-+||++++..+-+.--..+.+..++-.-+-+..+ .+ .+||+|-...
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~--~n-eqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD--NN-EQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc--CC-CCCEEEEEeC
Confidence 45899999888876655555554444333333332 22 6789887763
No 255
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=24.90 E-value=92 Score=16.27 Aligned_cols=23 Identities=4% Similarity=0.050 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHhcCeeccccccC
Q psy2871 156 NDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 156 ~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
.+...|.+++......++|+.+.
T Consensus 14 ~sr~~a~~~I~~g~V~VNg~~v~ 36 (48)
T PF01479_consen 14 SSRSEARRLIKQGRVKVNGKVVK 36 (48)
T ss_dssp SSHHHHHHHHHTTTEEETTEEES
T ss_pred CCHHHHHHhcCCCEEEECCEEEc
Confidence 35778889999988888888763
No 256
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=24.31 E-value=1.7e+02 Score=17.54 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=40.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhc-------CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCc
Q psy2871 19 VFIGGLDYRTTDESLQAFFEQW-------GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPH 80 (178)
Q Consensus 19 l~v~nlp~~~t~~~l~~~f~~~-------G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 80 (178)
+-.+++|..+|.++|...-..- ..|+.++-.-.. ...+-||+.+=.|.+...++-+..|.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~--d~~k~~Cly~Ap~~eaV~~~~~~aG~ 69 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSE--DDGKIFCLYEAPDEEAVREHARRAGL 69 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEec--CCCeEEEEEECCCHHHHHHHHHHcCC
Confidence 4467888889999988886542 344444333332 23467999999999988888776543
No 257
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=24.00 E-value=27 Score=20.43 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=24.8
Q ss_pred HHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 121 DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 121 ~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
++++..|..++...++.-+ .+|..|++.++|-.++..
T Consensus 27 ~~v~~~~~~~~~f~k~vkL----------~aF~pF~s~~~ALe~~~a 63 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL----------KAFSPFKSAEEALENANA 63 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh----------hhccCCCCHHHHHHHHHH
Confidence 6788888776544332211 389999999988777654
No 258
>KOG0862|consensus
Probab=23.78 E-value=51 Score=24.23 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=19.9
Q ss_pred HHHHHHHhh-ccCceeEEEeeeCCCCCCceeEEEEEECCHH
Q psy2871 120 EDDLREYFS-QFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159 (178)
Q Consensus 120 ~~~l~~~f~-~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~ 159 (178)
-++|...|. .||.-.. +...|.||||+|.+.-
T Consensus 88 LedL~~EF~~~~~~~~~--------~~~~RPY~FieFD~~I 120 (216)
T KOG0862|consen 88 LEDLAQEFDKSYGKNII--------QPASRPYAFIEFDTFI 120 (216)
T ss_pred HHHHHHHHHHhcccccC--------CccCCCeeEEehhHHH
Confidence 377777777 4653211 2345559999997643
No 259
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.78 E-value=99 Score=18.02 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcCceeEEEEeeCCCCCCccceEEE
Q psy2871 30 DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFI 63 (178)
Q Consensus 30 ~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV 63 (178)
+.+|...|-+-.+|.++.+..++.- .+|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 4466777777788999998877643 3455554
No 260
>KOG0156|consensus
Probab=23.65 E-value=1.6e+02 Score=24.66 Aligned_cols=57 Identities=12% Similarity=0.360 Sum_probs=42.7
Q ss_pred EEeCCCcc----cHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccc
Q psy2871 111 FVGGLKDQ----EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRR 176 (178)
Q Consensus 111 ~v~~l~~~----t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ 176 (178)
+|||+..+ .-..+.++-.+||+|-.+.+-.. -.|--.+.+.|+.|+..++..+.|++
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp 96 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRP 96 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCC
Confidence 57888762 23456666678999987776322 34777899999999999888888875
No 261
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=23.63 E-value=1.3e+02 Score=20.62 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=19.1
Q ss_pred CceeEEEEEECCHHHHHHHHHhcCeec
Q psy2871 146 AKRGFAFIEFNDYDVVDKIVLSKITLL 172 (178)
Q Consensus 146 ~~~g~afv~F~~~~~a~~a~~~~~~~~ 172 (178)
.+-|...+-|.+.++|++....+++++
T Consensus 112 ~pMg~~~~aF~~~~~A~~F~~~~GG~v 138 (149)
T PF05573_consen 112 GPMGPDLIAFASKEDAEAFAKEHGGKV 138 (149)
T ss_dssp -TTS--EEEES-HHHHHHHHHHTEEEE
T ss_pred CCCCCcccccCCHHHHHHHHHHcCCEE
Confidence 344578999999999999999886654
No 262
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=23.49 E-value=2.4e+02 Score=19.07 Aligned_cols=45 Identities=11% Similarity=0.290 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHhh-cC--ceeEE---EEeeCCCCCCccceEEEEeCCHHHHH
Q psy2871 27 RTTDESLQAFFEQ-WG--EIVDV---VVMKDPITKRSRGFGFITYSEAKMVD 72 (178)
Q Consensus 27 ~~t~~~l~~~f~~-~G--~i~~~---~~~~~~~~~~~~g~afV~f~~~~~a~ 72 (178)
..+..+|++-+.. |+ +...+ .+......+.+.|||.| |.+.+.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 3567788887764 55 22222 22233345677777777 55555544
No 263
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=23.31 E-value=1.8e+02 Score=25.01 Aligned_cols=39 Identities=10% Similarity=0.224 Sum_probs=32.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMK 50 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~ 50 (178)
+.-+...+|+.+|+.+..++-=.++......++++.+++
T Consensus 297 EGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~r 335 (621)
T COG0445 297 EGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILR 335 (621)
T ss_pred CCCCCceEecCcccccCCHHHHHHHHHhCcccccceeec
Confidence 445577899999999999998888888887888888876
No 264
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.27 E-value=67 Score=16.22 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=13.9
Q ss_pred ccHHHHHHHhhccCce
Q psy2871 118 QEEDDLREYFSQFGTI 133 (178)
Q Consensus 118 ~t~~~l~~~f~~~G~v 133 (178)
+++++|+..+..+|-.
T Consensus 4 Ws~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCHHHHHHHHHHcCCC
Confidence 7899999999999743
No 265
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=22.90 E-value=88 Score=17.46 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.3
Q ss_pred cCCCCCCCHHHHHHHHhhc
Q psy2871 22 GGLDYRTTDESLQAFFEQW 40 (178)
Q Consensus 22 ~nlp~~~t~~~l~~~f~~~ 40 (178)
-||+++++.++|+..|...
T Consensus 6 Lgl~~~~~~~eik~~y~~l 24 (64)
T PF00226_consen 6 LGLPPDASDEEIKKAYRRL 24 (64)
T ss_dssp CTSTTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHhh
Confidence 4789999999999998764
No 266
>KOG4008|consensus
Probab=22.67 E-value=80 Score=23.67 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=26.2
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEE
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESV 136 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~ 136 (178)
....+||+-|+|. .+++-|....+.+|.+...
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3345799999999 9999999999999865443
No 267
>PHA01632 hypothetical protein
Probab=21.98 E-value=86 Score=17.66 Aligned_cols=20 Identities=15% Similarity=0.489 Sum_probs=15.9
Q ss_pred EEEeCCCc-ccHHHHHHHhhc
Q psy2871 110 MFVGGLKD-QEEDDLREYFSQ 129 (178)
Q Consensus 110 l~v~~l~~-~t~~~l~~~f~~ 129 (178)
+.|..+|. -|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 45678888 999999988664
No 268
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=21.91 E-value=1e+02 Score=16.34 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.5
Q ss_pred EcCCCCCCCHHHHHHHHhhc
Q psy2871 21 IGGLDYRTTDESLQAFFEQW 40 (178)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~ 40 (178)
|-+|++.++.++|+..|...
T Consensus 5 vLgl~~~~~~~~ik~~y~~l 24 (55)
T cd06257 5 ILGVPPDASDEEIKKAYRKL 24 (55)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 34788999999999998764
No 269
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=21.90 E-value=1.3e+02 Score=19.26 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=22.7
Q ss_pred cCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 130 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 130 ~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
||++++.+......+..---|..++|.+.++++.|...
T Consensus 48 ~Gk~T~F~rAVkA~ddE~VvFsW~~Y~skq~rDA~~~k 85 (117)
T COG5507 48 YGKLTDFPRAVKAKDDEEVVFSWIEYPSKQVRDAANAK 85 (117)
T ss_pred CCcccchhhhhhccCCcEEEEEEEEcCchhHHHHHHHH
Confidence 44444433322222233334788999999999888765
No 270
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=21.13 E-value=1.6e+02 Score=16.14 Aligned_cols=56 Identities=11% Similarity=0.139 Sum_probs=39.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCH----HHHHHHHhcCC
Q psy2871 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEA----KMVDDAMSNRP 79 (178)
Q Consensus 18 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~----~~a~~a~~~~~ 79 (178)
++.|.|+.-.--...|.+.+.....|.++.+-... +-+-|.|... +....+++..|
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHhC
Confidence 46677777776778899999998889888876543 6788888744 55566665543
No 271
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=21.00 E-value=42 Score=19.19 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhhcCcee
Q psy2871 23 GLDYRTTDESLQAFFEQWGEIV 44 (178)
Q Consensus 23 nlp~~~t~~~l~~~f~~~G~i~ 44 (178)
.|+...|+++|.+....++.+.
T Consensus 5 Dls~~lTeEEl~~~i~~L~~~~ 26 (61)
T TIGR01639 5 DLSKKLSKEELNELINSLDEIP 26 (61)
T ss_pred HHhHHccHHHHHHHHHhhcCCC
Confidence 4667788888888888776653
No 272
>PF15063 TC1: Thyroid cancer protein 1
Probab=20.97 E-value=75 Score=19.19 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=23.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCce
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEI 43 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i 43 (178)
.|.=-+.||-.+++..+|+.+|..-|.-
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 4455678899999999999999988764
No 273
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.72 E-value=76 Score=25.73 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=47.7
Q ss_pred cccEEEEeCCCc-cc--------HHHHHHHhhc--cCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHH
Q psy2871 106 TVKKMFVGGLKD-QE--------EDDLREYFSQ--FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVL 166 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t--------~~~l~~~f~~--~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~ 166 (178)
..+.+|+.+.+. -. .+++...|.. .+....++..++.....++|..|++|+....|++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345677777765 22 3589999998 6778888887776567778889999999999999884
No 274
>KOG4365|consensus
Probab=20.54 E-value=47 Score=27.26 Aligned_cols=73 Identities=7% Similarity=-0.206 Sum_probs=50.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.+-++..+|...+++++.-+|..||.|..+.+.+...++...-.+|+.-... ++..++.. ....+.|..+++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~ 77 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKA 77 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhh
Confidence 3557889999999999999999999999888888776776666777765532 33444443 2344445444444
No 275
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.27 E-value=1.7e+02 Score=17.81 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=19.9
Q ss_pred ccceEEEEeCCHHHHHHHHhcC
Q psy2871 57 SRGFGFITYSEAKMVDDAMSNR 78 (178)
Q Consensus 57 ~~g~afV~f~~~~~a~~a~~~~ 78 (178)
.+||-||+=.+..++..|++..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi 64 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGI 64 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-
T ss_pred CceEEEEEeCCHHHHHHHHhcc
Confidence 7899999999999999999874
No 276
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=20.18 E-value=2.4e+02 Score=17.71 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=35.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc--------CceeEEEEeeC-----CCCCCccc-eEEEEeCCHHHHHHHHhc
Q psy2871 18 KVFIGGLDYRTTDESLQAFFEQW--------GEIVDVVVMKD-----PITKRSRG-FGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 18 ~l~v~nlp~~~t~~~l~~~f~~~--------G~i~~~~~~~~-----~~~~~~~g-~afV~f~~~~~a~~a~~~ 77 (178)
+++| |.|+.+++++..+...+ |.|..+.-.-. +-.+...| |.++.|....++...++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 4454 56888888888776654 56655532111 11234445 588888877777777665
No 277
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=20.13 E-value=1.2e+02 Score=16.52 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=16.6
Q ss_pred EcCCCCCCCHHHHHHHHhhc
Q psy2871 21 IGGLDYRTTDESLQAFFEQW 40 (178)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~ 40 (178)
|-+|+++++.++|+..|...
T Consensus 6 vLgl~~~~~~~~ik~ay~~l 25 (60)
T smart00271 6 ILGVPRDASLDEIKKAYRKL 25 (60)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 44789999999999998764
Done!