Query psy2871
Match_columns 178
No_of_seqs 112 out of 1363
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 19:02:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 2.8E-39 9.7E-44 231.9 20.9 170 8-177 5-175 (196)
2 4f02_A Polyadenylate-binding p 100.0 7.7E-37 2.6E-41 222.5 18.2 159 13-177 12-173 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 3.5E-36 1.2E-40 210.1 20.0 156 17-177 1-159 (166)
4 1fxl_A Paraneoplastic encephal 100.0 7.1E-36 2.4E-40 208.8 21.5 156 15-176 1-159 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 5.3E-36 1.8E-40 209.8 20.3 157 15-177 2-163 (168)
6 2cjk_A Nuclear polyadenylated 100.0 7.9E-37 2.7E-41 213.9 14.3 156 15-177 2-158 (167)
7 2qfj_A FBP-interacting repress 100.0 1.7E-35 5.7E-40 215.2 16.2 164 14-177 26-197 (216)
8 3nmr_A Cugbp ELAV-like family 100.0 3.7E-34 1.3E-38 201.6 18.9 154 15-174 2-163 (175)
9 2g4b_A Splicing factor U2AF 65 100.0 2.2E-33 7.5E-38 197.3 19.3 152 14-177 2-166 (172)
10 2yh0_A Splicing factor U2AF 65 100.0 1.7E-32 5.8E-37 196.8 20.3 158 14-177 2-186 (198)
11 1fje_B Nucleolin RBD12, protei 100.0 1.3E-33 4.4E-38 199.2 12.6 157 11-177 8-166 (175)
12 3tyt_A Heterogeneous nuclear r 100.0 1.2E-32 4E-37 199.2 17.7 154 15-175 3-193 (205)
13 3smz_A Protein raver-1, ribonu 100.0 3.3E-32 1.1E-36 205.7 20.5 159 15-177 94-256 (284)
14 3sde_A Paraspeckle component 1 100.0 7.4E-32 2.5E-36 201.8 18.8 143 7-168 13-157 (261)
15 3pgw_A U1-A; protein-RNA compl 100.0 2.4E-31 8.1E-36 200.8 20.2 158 12-177 5-275 (282)
16 2ghp_A U4/U6 snRNA-associated 100.0 7.8E-32 2.7E-36 204.4 17.4 162 15-177 116-283 (292)
17 2adc_A Polypyrimidine tract-bi 100.0 2.6E-31 8.9E-36 195.2 18.6 156 12-177 30-220 (229)
18 2ghp_A U4/U6 snRNA-associated 100.0 1.5E-31 5E-36 202.9 17.4 153 9-177 34-189 (292)
19 3smz_A Protein raver-1, ribonu 100.0 6.1E-31 2.1E-35 198.7 19.6 145 14-177 20-167 (284)
20 1qm9_A Polypyrimidine tract-bi 100.0 2.3E-31 7.8E-36 191.2 14.9 153 15-177 2-189 (198)
21 4f25_A Polyadenylate-binding p 99.9 3.1E-24 1.1E-28 141.5 10.2 107 14-122 3-113 (115)
22 2kn4_A Immunoglobulin G-bindin 99.9 8.8E-23 3E-27 141.6 12.6 131 45-177 2-142 (158)
23 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-22 3.7E-27 130.5 10.9 80 15-94 18-98 (99)
24 2lxi_A RNA-binding protein 10; 99.9 8.8E-23 3E-27 129.0 7.8 83 16-98 1-86 (91)
25 3s8s_A Histone-lysine N-methyl 99.9 2.1E-21 7.2E-26 126.8 11.3 85 12-96 2-87 (110)
26 3s7r_A Heterogeneous nuclear r 99.9 3.1E-21 1.1E-25 120.7 11.3 83 10-92 5-87 (87)
27 2dgs_A DAZ-associated protein 99.9 4.6E-21 1.6E-25 122.8 12.1 91 10-100 4-94 (99)
28 2cqc_A Arginine/serine-rich sp 99.9 9.3E-21 3.2E-25 120.4 12.1 88 7-94 6-94 (95)
29 1x4h_A RNA-binding protein 28; 99.9 1.1E-20 3.9E-25 123.4 12.9 93 7-99 6-105 (111)
30 2dh8_A DAZ-associated protein 99.9 7E-21 2.4E-25 123.3 11.5 93 8-100 8-100 (105)
31 1whw_A Hypothetical protein ri 99.9 1E-20 3.4E-25 121.2 12.0 88 11-98 3-91 (99)
32 1x5u_A Splicing factor 3B subu 99.9 8.9E-21 3E-25 122.8 11.8 92 7-98 6-98 (105)
33 2lkz_A RNA-binding protein 5; 99.9 1.7E-21 5.8E-26 123.9 8.0 83 12-94 5-94 (95)
34 2dgo_A Cytotoxic granule-assoc 99.9 2.3E-20 7.7E-25 122.8 13.8 93 7-99 6-99 (115)
35 3bs9_A Nucleolysin TIA-1 isofo 99.9 6.7E-21 2.3E-25 119.2 10.3 82 14-95 4-86 (87)
36 2jrs_A RNA-binding protein 39; 99.9 6.4E-21 2.2E-25 124.1 10.5 92 5-96 15-107 (108)
37 2cq0_A Eukaryotic translation 99.8 1.4E-20 4.9E-25 121.4 11.8 90 9-98 8-98 (103)
38 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1E-20 3.4E-25 121.9 11.0 92 8-99 4-96 (102)
39 2cqg_A TDP-43, TAR DNA-binding 99.8 4.5E-20 1.5E-24 119.0 13.8 90 9-99 8-97 (103)
40 2cpz_A CUG triplet repeat RNA- 99.8 2.2E-20 7.6E-25 122.9 12.4 91 9-99 18-109 (115)
41 2do4_A Squamous cell carcinoma 99.8 2.9E-20 9.8E-25 119.3 12.7 88 9-97 10-98 (100)
42 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.7E-21 3.3E-25 117.9 10.2 82 12-93 3-85 (85)
43 2rs2_A Musashi-1, RNA-binding 99.8 1.6E-20 5.5E-25 122.4 11.5 87 11-97 20-106 (109)
44 1x5s_A Cold-inducible RNA-bind 99.8 1.3E-20 4.3E-25 121.4 10.8 90 9-98 5-95 (102)
45 2dng_A Eukaryotic translation 99.8 3.6E-20 1.2E-24 119.5 12.9 91 7-98 6-96 (103)
46 2dnm_A SRP46 splicing factor; 99.8 1.2E-20 3.9E-25 121.8 10.5 90 9-98 6-96 (103)
47 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.1E-20 2.1E-24 118.4 13.8 91 7-99 6-97 (103)
48 1s79_A Lupus LA protein; RRM, 99.8 6.2E-21 2.1E-25 123.1 9.1 82 12-94 7-88 (103)
49 3md1_A Nuclear and cytoplasmic 99.8 1.5E-20 5.2E-25 116.5 10.5 81 16-96 1-82 (83)
50 2e5h_A Zinc finger CCHC-type a 99.8 2.8E-20 9.5E-25 118.0 11.9 86 8-93 8-94 (94)
51 1x5t_A Splicing factor 3B subu 99.8 1.8E-20 6.1E-25 119.4 10.8 86 14-99 3-90 (96)
52 2dnz_A Probable RNA-binding pr 99.8 2.6E-20 8.8E-25 118.4 11.4 86 13-98 2-88 (95)
53 3lqv_A PRE-mRNA branch site pr 99.8 8.7E-21 3E-25 124.8 9.4 103 13-132 5-109 (115)
54 1sjq_A Polypyrimidine tract-bi 99.8 1.7E-20 5.9E-25 120.7 10.5 92 2-99 2-96 (105)
55 2cph_A RNA binding motif prote 99.8 3.4E-20 1.1E-24 120.4 11.9 93 7-99 6-101 (107)
56 2x1f_A MRNA 3'-END-processing 99.8 2.5E-20 8.6E-25 118.7 10.7 83 15-97 1-84 (96)
57 2i2y_A Fusion protein consists 99.8 1.7E-20 5.9E-25 129.0 10.6 118 54-177 9-140 (150)
58 2cqd_A RNA-binding region cont 99.8 9.9E-20 3.4E-24 119.9 13.8 90 8-97 9-98 (116)
59 2cq3_A RNA-binding protein 9; 99.8 1.1E-19 3.8E-24 117.2 13.6 92 7-100 6-98 (103)
60 2d9p_A Polyadenylate-binding p 99.8 3.6E-20 1.2E-24 119.5 11.2 92 7-100 6-98 (103)
61 1p27_B RNA-binding protein 8A; 99.8 1.7E-20 5.7E-25 121.7 9.7 86 11-96 18-104 (106)
62 1wi8_A EIF-4B, eukaryotic tran 99.8 6.1E-20 2.1E-24 118.6 12.2 90 9-99 8-98 (104)
63 3ucg_A Polyadenylate-binding p 99.8 3.4E-20 1.2E-24 116.4 10.6 82 14-95 4-85 (89)
64 2cpy_A RNA-binding protein 12; 99.8 1.5E-20 5E-25 123.6 9.1 89 7-96 6-95 (114)
65 2cpf_A RNA binding motif prote 99.8 3.4E-20 1.2E-24 118.5 10.6 86 14-99 3-92 (98)
66 2div_A TRNA selenocysteine ass 99.8 3.7E-20 1.3E-24 118.5 10.6 86 11-96 4-95 (99)
67 2dgp_A Bruno-like 4, RNA bindi 99.8 3.5E-20 1.2E-24 120.1 10.5 90 9-98 6-99 (106)
68 1x4b_A Heterogeneous nuclear r 99.8 3.7E-20 1.3E-24 122.0 10.7 88 12-99 23-110 (116)
69 2dhg_A TRNA selenocysteine ass 99.8 4.2E-20 1.4E-24 119.4 10.7 89 11-100 4-95 (104)
70 2dnh_A Bruno-like 5, RNA bindi 99.8 7.6E-20 2.6E-24 118.3 11.9 86 12-98 11-100 (105)
71 2ywk_A Putative RNA-binding pr 99.8 4.2E-20 1.4E-24 117.4 10.4 85 9-94 9-94 (95)
72 2cpe_A RNA-binding protein EWS 99.8 6.4E-20 2.2E-24 120.2 11.6 90 10-99 9-107 (113)
73 1oo0_B CG8781-PA, drosophila Y 99.8 3.7E-20 1.2E-24 120.9 10.3 88 9-96 19-107 (110)
74 2kxn_B Transformer-2 protein h 99.8 2.9E-20 1E-24 124.7 9.7 88 9-96 39-127 (129)
75 2la6_A RNA-binding protein FUS 99.8 4.6E-20 1.6E-24 118.2 10.2 86 8-93 5-99 (99)
76 1wg5_A Heterogeneous nuclear r 99.8 8E-20 2.8E-24 118.1 11.1 88 9-97 8-96 (104)
77 2fy1_A RNA-binding motif prote 99.8 7.4E-20 2.5E-24 120.6 11.0 86 12-98 3-89 (116)
78 2khc_A Testis-specific RNP-typ 99.8 6E-20 2E-24 121.3 10.3 83 10-92 34-117 (118)
79 2mss_A Protein (musashi1); RNA 99.8 1.6E-20 5.5E-25 114.3 6.9 75 18-92 1-75 (75)
80 3ns6_A Eukaryotic translation 99.8 9.2E-21 3.2E-25 121.7 6.1 84 13-96 3-94 (100)
81 1u6f_A Tcubp1, RNA-binding pro 99.8 2E-19 7E-24 122.0 13.0 90 10-99 36-126 (139)
82 3p5t_L Cleavage and polyadenyl 99.8 8.5E-21 2.9E-25 119.6 5.4 81 17-97 2-85 (90)
83 2hvz_A Splicing factor, argini 99.8 2.1E-20 7.3E-25 120.1 7.2 95 17-116 1-100 (101)
84 1x4d_A Matrin 3; structural ge 99.8 1.1E-19 3.9E-24 116.6 10.5 87 6-98 5-95 (102)
85 2dgw_A Probable RNA-binding pr 99.8 2.3E-19 8E-24 113.1 11.9 85 10-96 4-88 (91)
86 3n9u_C Cleavage and polyadenyl 99.8 7.1E-20 2.4E-24 126.6 10.1 81 15-95 54-137 (156)
87 1p1t_A Cleavage stimulation fa 99.8 2.2E-20 7.5E-25 120.7 6.7 86 12-97 4-90 (104)
88 4a8x_A RNA-binding protein wit 99.8 9E-20 3.1E-24 114.2 9.3 82 15-96 3-86 (88)
89 2cq1_A PTB-like protein L; RRM 99.8 3.5E-19 1.2E-23 114.3 12.1 85 9-99 8-95 (101)
90 2cq4_A RNA binding motif prote 99.8 9.2E-20 3.1E-24 119.7 9.5 84 13-96 22-105 (114)
91 1wez_A HnRNP H', FTP-3, hetero 99.8 7.1E-20 2.4E-24 118.0 8.7 87 9-97 8-94 (102)
92 2do0_A HnRNP M, heterogeneous 99.8 6.8E-19 2.3E-23 115.5 13.6 87 10-97 9-96 (114)
93 1iqt_A AUF1, heterogeneous nuc 99.8 2.5E-20 8.6E-25 113.4 6.2 75 18-92 1-75 (75)
94 3ulh_A THO complex subunit 4; 99.8 2E-19 6.8E-24 116.7 10.8 83 10-93 23-106 (107)
95 1x4a_A Splicing factor, argini 99.8 7.3E-19 2.5E-23 114.5 13.5 89 7-98 13-102 (109)
96 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.9E-20 1E-24 119.4 6.7 88 8-96 11-99 (100)
97 2cqp_A RNA-binding protein 12; 99.8 7.3E-20 2.5E-24 117.0 8.5 87 9-95 8-95 (98)
98 3ex7_B RNA-binding protein 8A; 99.8 1.1E-19 3.8E-24 121.3 9.6 92 7-98 13-105 (126)
99 2kn4_A Immunoglobulin G-bindin 99.8 3.5E-19 1.2E-23 123.4 12.5 88 11-98 65-153 (158)
100 2dgx_A KIAA0430 protein; RRM d 99.8 4.1E-19 1.4E-23 113.1 11.8 83 12-97 5-92 (96)
101 2m2b_A RNA-binding protein 10; 99.8 5.6E-20 1.9E-24 123.7 8.1 89 8-97 15-110 (131)
102 2dgv_A HnRNP M, heterogeneous 99.8 2.4E-19 8E-24 113.3 10.3 84 12-97 4-88 (92)
103 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.6E-20 1.6E-24 112.7 6.8 76 17-92 1-76 (77)
104 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.1E-19 1.1E-23 121.1 11.6 84 9-92 56-140 (140)
105 3r27_A HnRNP L, heterogeneous 99.8 4.5E-19 1.5E-23 113.0 11.4 79 12-96 17-98 (100)
106 2xs2_A Deleted in azoospermia- 99.8 8.9E-20 3.1E-24 117.4 7.9 85 11-97 4-88 (102)
107 2a3j_A U1 small nuclear ribonu 99.8 2.3E-19 7.9E-24 119.8 10.1 86 9-97 22-112 (127)
108 2nlw_A Eukaryotic translation 99.8 3E-19 1E-23 115.6 10.2 88 7-96 6-101 (105)
109 1x4e_A RNA binding motif, sing 99.8 3.1E-20 1E-24 115.7 5.2 81 13-93 2-83 (85)
110 2kt5_A RNA and export factor-b 99.8 1E-18 3.5E-23 116.3 13.0 86 11-97 30-116 (124)
111 2ek1_A RNA-binding protein 12; 99.8 6.1E-20 2.1E-24 116.6 6.6 84 11-94 10-94 (95)
112 1wex_A Hypothetical protein (r 99.8 9.7E-19 3.3E-23 112.9 12.3 85 9-99 8-95 (104)
113 2jwn_A Embryonic polyadenylate 99.8 4.8E-19 1.6E-23 117.9 11.2 83 15-97 35-117 (124)
114 2cpi_A CCR4-NOT transcription 99.8 4.7E-19 1.6E-23 115.8 10.9 89 9-97 8-103 (111)
115 2dis_A Unnamed protein product 99.8 4.7E-19 1.6E-23 115.3 10.9 86 13-98 5-95 (109)
116 2ad9_A Polypyrimidine tract-bi 99.8 2.9E-19 9.9E-24 117.6 9.8 87 8-100 23-112 (119)
117 2err_A Ataxin-2-binding protei 99.8 2.8E-19 9.5E-24 116.6 9.6 86 9-96 22-108 (109)
118 2db1_A Heterogeneous nuclear r 99.8 3.2E-19 1.1E-23 117.9 9.9 85 11-96 12-99 (118)
119 2lea_A Serine/arginine-rich sp 99.8 1.5E-19 5.1E-24 122.2 8.2 89 9-97 40-129 (135)
120 1h2v_Z 20 kDa nuclear CAP bind 99.8 7.6E-19 2.6E-23 121.5 11.8 86 12-97 35-121 (156)
121 2wbr_A GW182, gawky, LD47780P; 99.8 7.1E-19 2.4E-23 108.6 10.1 74 14-93 5-79 (89)
122 2dnn_A RNA-binding protein 12; 99.8 5.2E-19 1.8E-23 115.0 9.9 83 12-96 12-94 (109)
123 4fxv_A ELAV-like protein 1; RN 99.8 6E-19 2E-23 113.0 9.9 71 107-177 19-91 (99)
124 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.6E-19 2.2E-23 122.9 10.8 87 11-97 67-154 (165)
125 2ki2_A SS-DNA binding protein 99.8 5.7E-20 1.9E-24 115.7 4.7 80 17-97 2-82 (90)
126 2fc9_A NCL protein; structure 99.8 1.4E-18 4.8E-23 111.6 11.4 86 9-98 8-94 (101)
127 2dnq_A RNA-binding protein 4B; 99.8 1.5E-18 5E-23 109.2 11.1 80 12-99 4-84 (90)
128 2hgl_A HNRPF protein, heteroge 99.8 1.8E-19 6.2E-24 121.6 7.2 85 11-96 39-126 (136)
129 2hgm_A HNRPF protein, heteroge 99.8 2.6E-19 9E-24 119.1 7.1 84 11-96 37-122 (126)
130 1x4c_A Splicing factor, argini 99.8 6.9E-18 2.4E-22 109.7 13.7 83 10-99 9-97 (108)
131 1x5o_A RNA binding motif, sing 99.8 1.2E-18 4.2E-23 114.3 10.1 84 11-95 20-112 (114)
132 2lmi_A GRSF-1, G-rich sequence 99.8 2E-19 6.7E-24 116.9 6.2 86 10-96 5-93 (107)
133 3s8s_A Histone-lysine N-methyl 99.8 1.6E-18 5.6E-23 113.0 10.4 74 104-177 3-78 (110)
134 1wel_A RNA-binding protein 12; 99.8 2.4E-19 8.1E-24 119.5 6.5 85 12-96 21-105 (124)
135 2cpj_A Non-POU domain-containi 99.8 1.7E-18 5.8E-23 110.8 10.2 84 8-97 7-91 (99)
136 3s7r_A Heterogeneous nuclear r 99.8 2E-18 6.8E-23 107.9 10.2 75 103-177 7-82 (87)
137 2dgt_A RNA-binding protein 30; 99.8 5.1E-18 1.8E-22 107.1 12.2 81 10-98 4-85 (92)
138 2ytc_A PRE-mRNA-splicing facto 99.8 3.1E-18 1.1E-22 106.5 10.8 80 8-93 4-85 (85)
139 1fj7_A Nucleolin RBD1, protein 99.8 1.3E-19 4.4E-24 116.5 4.6 87 10-97 11-97 (101)
140 1x4f_A Matrin 3; structural ge 99.8 1.1E-18 3.9E-23 113.6 9.0 81 12-98 21-105 (112)
141 2dgu_A Heterogeneous nuclear r 99.8 6.6E-18 2.2E-22 108.8 12.5 83 9-99 4-87 (103)
142 1l3k_A Heterogeneous nuclear r 99.8 2.4E-18 8.2E-23 122.7 11.2 89 12-100 100-188 (196)
143 1x4g_A Nucleolysin TIAR; struc 99.8 4.3E-18 1.5E-22 110.8 11.4 81 12-98 21-102 (109)
144 2cpx_A Hypothetical protein FL 99.8 5.6E-19 1.9E-23 116.0 7.2 88 12-99 21-109 (115)
145 2dha_A FLJ20171 protein; RRM d 99.8 3.9E-19 1.3E-23 118.0 6.4 82 14-96 21-106 (123)
146 2fc8_A NCL protein; structure 99.8 4E-18 1.4E-22 109.6 10.9 89 7-98 6-95 (102)
147 2dnp_A RNA-binding protein 14; 99.8 6.5E-18 2.2E-22 106.2 11.4 79 11-97 4-83 (90)
148 2krb_A Eukaryotic translation 99.8 7.1E-19 2.4E-23 108.5 6.8 72 16-89 1-80 (81)
149 1nu4_A U1A RNA binding domain; 99.8 1.2E-18 4E-23 111.1 7.6 82 12-96 4-90 (97)
150 2cpd_A Apobec-1 stimulating pr 99.8 1.9E-17 6.5E-22 105.9 13.2 83 7-97 6-91 (99)
151 2la4_A Nuclear and cytoplasmic 99.8 3.1E-18 1.1E-22 109.9 9.5 77 12-94 23-100 (101)
152 2xnq_A Nuclear polyadenylated 99.8 6.8E-18 2.3E-22 107.7 10.9 79 9-95 15-95 (97)
153 1s79_A Lupus LA protein; RRM, 99.8 3.3E-18 1.1E-22 110.3 9.5 73 104-177 8-81 (103)
154 1why_A Hypothetical protein ri 99.8 5E-18 1.7E-22 108.2 10.0 80 11-96 12-94 (97)
155 2lxi_A RNA-binding protein 10; 99.8 5.7E-19 2E-23 111.4 5.5 71 107-177 1-75 (91)
156 2e5g_A U6 snRNA-specific termi 99.8 1.5E-17 5.3E-22 105.3 11.8 82 12-98 4-85 (94)
157 1wf1_A RNA-binding protein RAL 99.8 1.2E-17 4.2E-22 108.8 11.7 77 13-97 24-102 (110)
158 2jvr_A Nucleolar protein 3; RN 99.8 3.5E-18 1.2E-22 111.4 9.0 79 13-95 25-105 (111)
159 2jvo_A Nucleolar protein 3; nu 99.8 5.9E-18 2E-22 110.0 9.9 80 10-97 25-105 (108)
160 1fjc_A Nucleolin RBD2, protein 99.8 2.5E-18 8.6E-23 109.4 7.8 83 9-96 9-92 (96)
161 2lkz_A RNA-binding protein 5; 99.8 8.6E-19 2.9E-23 111.3 5.5 75 103-177 5-87 (95)
162 2e5j_A Methenyltetrahydrofolat 99.8 6.9E-18 2.4E-22 107.6 9.8 80 12-96 15-95 (97)
163 2hgn_A Heterogeneous nuclear r 99.8 6.1E-19 2.1E-23 119.4 4.9 84 12-97 42-125 (139)
164 3q2s_C Cleavage and polyadenyl 99.8 3.7E-18 1.3E-22 125.0 9.2 81 15-95 67-150 (229)
165 2dgs_A DAZ-associated protein 99.7 1.3E-17 4.6E-22 106.6 10.6 75 103-177 6-81 (99)
166 2i2y_A Fusion protein consists 99.7 7.2E-18 2.5E-22 115.8 10.0 82 10-96 67-149 (150)
167 2cqh_A IGF-II mRNA-binding pro 99.7 5.7E-18 2E-22 107.1 8.8 80 12-98 4-86 (93)
168 3d2w_A TAR DNA-binding protein 99.7 6.3E-18 2.1E-22 106.1 8.9 81 11-97 6-86 (89)
169 3md3_A Nuclear and cytoplasmic 99.7 1.5E-17 5.2E-22 115.3 11.7 84 10-93 81-165 (166)
170 1whx_A Hypothetical protein ri 99.7 4.9E-18 1.7E-22 111.0 7.9 80 12-97 6-86 (111)
171 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.6E-17 5.4E-22 103.7 9.9 73 105-177 4-78 (87)
172 1wf0_A TDP-43, TAR DNA-binding 99.7 7E-18 2.4E-22 105.6 8.3 80 14-99 3-82 (88)
173 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.1E-17 3.6E-22 104.0 8.9 74 104-177 4-79 (85)
174 2e44_A Insulin-like growth fac 99.7 1.4E-17 4.8E-22 105.9 9.7 83 10-96 9-93 (96)
175 2f3j_A RNA and export factor b 99.7 9.3E-18 3.2E-22 118.3 9.6 85 12-97 84-169 (177)
176 2cqc_A Arginine/serine-rich sp 99.7 2.8E-17 9.7E-22 104.2 10.9 76 102-177 10-87 (95)
177 2lcw_A RNA-binding protein FUS 99.6 1.5E-19 5.2E-24 119.0 0.0 88 12-99 3-99 (116)
178 2lea_A Serine/arginine-rich sp 99.7 4.9E-18 1.7E-22 114.7 7.3 111 60-177 6-119 (135)
179 2cqd_A RNA-binding region cont 99.7 2.8E-17 9.6E-22 108.1 10.8 77 101-177 11-88 (116)
180 2kvi_A Nuclear polyadenylated 99.7 6.9E-18 2.4E-22 107.4 7.5 79 12-98 6-86 (96)
181 2dnz_A Probable RNA-binding pr 99.7 2.7E-17 9.1E-22 104.3 10.2 73 105-177 3-77 (95)
182 2cjk_A Nuclear polyadenylated 99.7 5.1E-18 1.7E-22 118.0 7.4 81 15-95 86-166 (167)
183 2do4_A Squamous cell carcinoma 99.7 4.5E-17 1.5E-21 104.3 11.3 75 102-177 12-88 (100)
184 2mss_A Protein (musashi1); RNA 99.7 7E-18 2.4E-22 102.4 6.9 69 109-177 1-70 (75)
185 1x5p_A Negative elongation fac 99.7 1.1E-16 3.6E-21 102.0 12.7 82 9-98 8-90 (97)
186 2g4b_A Splicing factor U2AF 65 99.7 3.1E-17 1E-21 114.6 11.1 81 13-93 91-172 (172)
187 1iqt_A AUF1, heterogeneous nuc 99.7 4.2E-18 1.4E-22 103.4 5.8 70 109-178 1-71 (75)
188 1whw_A Hypothetical protein ri 99.7 3.1E-17 1E-21 104.9 10.0 74 104-177 5-80 (99)
189 2jrs_A RNA-binding protein 39; 99.7 4.2E-17 1.4E-21 106.0 10.8 77 101-177 20-98 (108)
190 2x1f_A MRNA 3'-END-processing 99.7 2.3E-17 7.9E-22 104.9 9.4 72 106-177 1-74 (96)
191 2rs2_A Musashi-1, RNA-binding 99.7 1.4E-17 4.8E-22 108.4 8.4 73 105-177 23-96 (109)
192 3md1_A Nuclear and cytoplasmic 99.7 3.8E-17 1.3E-21 101.0 9.9 70 108-177 2-73 (83)
193 1p27_B RNA-binding protein 8A; 99.7 5.6E-17 1.9E-21 104.9 10.8 74 104-177 20-95 (106)
194 2dh8_A DAZ-associated protein 99.7 2.6E-17 8.8E-22 106.4 9.2 75 103-177 12-87 (105)
195 1x5u_A Splicing factor 3B subu 99.7 4.9E-17 1.7E-21 105.0 10.5 75 103-177 11-87 (105)
196 1x4e_A RNA binding motif, sing 99.7 1.4E-17 4.8E-22 103.5 7.6 73 105-177 3-77 (85)
197 2e5h_A Zinc finger CCHC-type a 99.7 3E-17 1E-21 103.9 9.2 75 103-177 12-88 (94)
198 3p5t_L Cleavage and polyadenyl 99.7 8.5E-18 2.9E-22 105.7 6.6 70 108-177 2-75 (90)
199 2voo_A Lupus LA protein; RNA-b 99.7 3.8E-17 1.3E-21 116.7 10.8 82 15-97 108-189 (193)
200 3ucg_A Polyadenylate-binding p 99.7 3.3E-17 1.1E-21 102.6 9.2 72 106-177 5-77 (89)
201 2cq0_A Eukaryotic translation 99.7 4.7E-17 1.6E-21 104.7 10.1 75 103-177 11-87 (103)
202 2hzc_A Splicing factor U2AF 65 99.7 4.4E-17 1.5E-21 101.6 9.6 73 13-91 3-86 (87)
203 2j8a_A Histone-lysine N-methyl 99.7 2.3E-17 7.9E-22 108.5 8.6 77 17-93 3-94 (136)
204 1wg1_A KIAA1579 protein, homol 99.7 2.5E-17 8.7E-22 103.1 8.4 76 14-96 3-79 (88)
205 3pgw_S U1-70K; protein-RNA com 99.7 2E-18 6.9E-23 137.2 3.9 74 104-177 99-174 (437)
206 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8.3E-18 2.9E-22 102.5 5.8 70 108-177 1-71 (77)
207 1oo0_B CG8781-PA, drosophila Y 99.7 5.1E-17 1.7E-21 105.8 9.9 75 103-177 22-98 (110)
208 4f25_A Polyadenylate-binding p 99.7 3.3E-17 1.1E-21 107.7 9.0 69 107-177 5-75 (115)
209 2la6_A RNA-binding protein FUS 99.7 7.3E-17 2.5E-21 103.1 10.4 75 103-177 9-93 (99)
210 2dnm_A SRP46 splicing factor; 99.7 3.6E-17 1.2E-21 105.3 9.0 74 104-177 10-85 (103)
211 2dgo_A Cytotoxic granule-assoc 99.7 1E-16 3.5E-21 105.2 11.3 75 103-177 11-87 (115)
212 2dnl_A Cytoplasmic polyadenyla 99.7 2.8E-17 9.6E-22 107.8 8.6 79 12-92 4-85 (114)
213 2qfj_A FBP-interacting repress 99.7 5E-17 1.7E-21 117.5 10.8 85 14-98 123-208 (216)
214 2yh0_A Splicing factor U2AF 65 99.7 7.3E-17 2.5E-21 115.1 11.5 85 13-97 111-196 (198)
215 2div_A TRNA selenocysteine ass 99.7 5.6E-17 1.9E-21 103.6 9.8 74 103-176 5-81 (99)
216 1wg5_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 105.2 9.2 74 104-178 12-87 (104)
217 2cqg_A TDP-43, TAR DNA-binding 99.7 1.1E-16 3.6E-21 103.1 11.0 74 103-177 11-85 (103)
218 2ywk_A Putative RNA-binding pr 99.7 7.2E-17 2.5E-21 102.3 10.0 74 103-177 12-87 (95)
219 2cq2_A Hypothetical protein LO 99.7 7E-17 2.4E-21 105.2 9.8 81 11-97 20-108 (114)
220 3egn_A RNA-binding protein 40; 99.7 4E-17 1.4E-21 111.2 9.2 82 13-97 42-132 (143)
221 1x5s_A Cold-inducible RNA-bind 99.7 4.5E-17 1.5E-21 104.6 8.9 75 103-177 8-84 (102)
222 2cpz_A CUG triplet repeat RNA- 99.7 7.4E-17 2.5E-21 105.9 10.1 75 103-177 21-97 (115)
223 1sjr_A Polypyrimidine tract-bi 99.7 1.1E-16 3.8E-21 110.4 11.3 82 12-97 42-126 (164)
224 1x4h_A RNA-binding protein 28; 99.7 9.8E-17 3.3E-21 104.6 10.5 74 104-177 12-93 (111)
225 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7.4E-17 2.5E-21 112.5 10.4 73 105-177 70-144 (165)
226 2dng_A Eukaryotic translation 99.7 1.3E-16 4.6E-21 102.6 10.8 74 103-177 11-85 (103)
227 1x5t_A Splicing factor 3B subu 99.7 3.2E-17 1.1E-21 104.1 7.7 73 105-177 3-78 (96)
228 2dhg_A TRNA selenocysteine ass 99.7 1.2E-16 4E-21 103.0 10.4 74 103-177 5-82 (104)
229 3pgw_S U1-70K; protein-RNA com 99.7 8.6E-17 3E-21 127.9 11.7 85 13-97 99-184 (437)
230 2krb_A Eukaryotic translation 99.7 4.7E-17 1.6E-21 100.3 8.1 68 108-177 2-78 (81)
231 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.3E-17 1.1E-21 105.3 7.6 74 104-177 9-84 (102)
232 2e5i_A Heterogeneous nuclear r 99.7 2.9E-16 9.8E-21 104.0 12.2 78 14-97 23-104 (124)
233 2khc_A Testis-specific RNP-typ 99.7 9.3E-17 3.2E-21 105.8 9.9 75 103-177 36-112 (118)
234 2d9p_A Polyadenylate-binding p 99.7 1.4E-16 4.9E-21 102.5 10.5 74 102-177 10-85 (103)
235 2kxn_B Transformer-2 protein h 99.7 7.7E-17 2.6E-21 108.0 9.5 75 103-177 42-118 (129)
236 2cpf_A RNA binding motif prote 99.7 5.2E-17 1.8E-21 103.6 8.2 73 105-177 3-80 (98)
237 2dnh_A Bruno-like 5, RNA bindi 99.7 2.4E-16 8.1E-21 101.8 11.3 71 103-174 11-83 (105)
238 1wez_A HnRNP H', FTP-3, hetero 99.7 4.7E-17 1.6E-21 104.7 7.9 73 104-178 12-85 (102)
239 1wi8_A EIF-4B, eukaryotic tran 99.7 1.3E-16 4.3E-21 102.9 9.9 74 103-177 11-86 (104)
240 3zzy_A Polypyrimidine tract-bi 99.7 2.7E-16 9.2E-21 104.7 11.7 81 12-97 24-108 (130)
241 1p1t_A Cleavage stimulation fa 99.7 3.8E-17 1.3E-21 105.3 7.3 73 105-177 6-80 (104)
242 2hgn_A Heterogeneous nuclear r 99.7 9.6E-18 3.3E-22 113.5 4.6 114 59-178 2-116 (139)
243 4a8x_A RNA-binding protein wit 99.7 5.5E-17 1.9E-21 101.3 7.7 72 106-177 3-77 (88)
244 2cph_A RNA binding motif prote 99.7 1.7E-16 5.7E-21 102.8 10.3 75 103-177 11-89 (107)
245 2cq4_A RNA binding motif prote 99.7 7.6E-17 2.6E-21 105.7 8.7 73 105-177 23-96 (114)
246 3ulh_A THO complex subunit 4; 99.7 1.6E-16 5.6E-21 102.9 10.2 74 103-177 25-100 (107)
247 2fy1_A RNA-binding motif prote 99.7 1.2E-16 4.2E-21 105.1 9.5 72 105-177 5-78 (116)
248 1x4b_A Heterogeneous nuclear r 99.7 6.2E-17 2.1E-21 106.4 8.0 73 105-177 25-98 (116)
249 3n9u_C Cleavage and polyadenyl 99.7 1.2E-16 4.3E-21 110.3 9.8 72 106-177 54-129 (156)
250 2diu_A KIAA0430 protein; struc 99.7 2.4E-16 8.1E-21 98.2 10.0 76 14-99 6-88 (96)
251 2cpy_A RNA-binding protein 12; 99.7 7E-17 2.4E-21 105.9 8.0 73 104-177 12-86 (114)
252 2dgp_A Bruno-like 4, RNA bindi 99.7 9.9E-17 3.4E-21 103.7 8.6 75 103-177 9-88 (106)
253 2kt5_A RNA and export factor-b 99.7 1.8E-16 6.1E-21 105.4 10.1 74 103-177 31-106 (124)
254 1sjq_A Polypyrimidine tract-bi 99.7 7.9E-17 2.7E-21 103.5 8.0 68 104-177 13-84 (105)
255 1b7f_A Protein (SXL-lethal pro 99.7 1.6E-16 5.4E-21 110.5 10.3 81 12-92 85-168 (168)
256 2dgv_A HnRNP M, heterogeneous 99.7 3.1E-16 1.1E-20 98.8 10.6 72 104-177 5-78 (92)
257 2xs2_A Deleted in azoospermia- 99.7 5.8E-17 2E-21 104.1 7.2 72 104-177 6-78 (102)
258 3ns6_A Eukaryotic translation 99.7 1.2E-16 4E-21 102.4 8.5 73 105-177 4-85 (100)
259 2ek1_A RNA-binding protein 12; 99.7 5.1E-17 1.7E-21 103.0 6.6 73 105-177 13-87 (95)
260 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.2E-17 2.1E-21 103.7 7.1 74 103-177 15-90 (100)
261 2db1_A Heterogeneous nuclear r 99.7 1.2E-16 4.1E-21 105.4 8.6 73 104-177 14-90 (118)
262 4f02_A Polyadenylate-binding p 99.7 1.5E-16 5.1E-21 115.3 9.7 81 15-97 102-183 (213)
263 2hgm_A HNRPF protein, heteroge 99.7 1.6E-16 5.6E-21 105.6 9.0 72 105-178 40-114 (126)
264 2cqp_A RNA-binding protein 12; 99.7 1E-16 3.5E-21 102.2 7.7 75 103-177 11-87 (98)
265 2dnn_A RNA-binding protein 12; 99.7 1.4E-16 4.8E-21 103.5 8.4 71 106-178 15-86 (109)
266 2cq3_A RNA-binding protein 9; 99.7 5.5E-16 1.9E-20 99.7 11.1 73 103-177 11-85 (103)
267 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.7E-16 1.3E-20 105.8 10.8 75 103-177 59-135 (140)
268 2dha_A FLJ20171 protein; RRM d 99.7 9.3E-17 3.2E-21 106.5 7.4 73 105-178 21-98 (123)
269 1u6f_A Tcubp1, RNA-binding pro 99.7 3.2E-16 1.1E-20 106.1 10.3 74 104-177 39-114 (139)
270 3nmr_A Cugbp ELAV-like family 99.7 2.1E-16 7.1E-21 110.5 9.5 81 12-93 91-175 (175)
271 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.1E-16 1.7E-20 99.9 10.5 73 103-177 11-85 (103)
272 3ex7_B RNA-binding protein 8A; 99.7 2.7E-16 9.3E-21 104.8 9.6 74 104-177 19-94 (126)
273 2cpe_A RNA-binding protein EWS 99.7 2.1E-16 7.1E-21 103.4 8.8 75 103-177 11-95 (113)
274 2jwn_A Embryonic polyadenylate 99.7 1.7E-16 5.8E-21 105.5 8.2 72 106-177 35-107 (124)
275 2hgl_A HNRPF protein, heteroge 99.7 1.1E-16 3.6E-21 108.0 7.2 73 105-178 42-118 (136)
276 1fxl_A Paraneoplastic encephal 99.7 2.9E-16 9.9E-21 108.9 9.7 80 13-92 85-167 (167)
277 3beg_B Splicing factor, argini 99.7 1.8E-16 6E-21 104.1 8.0 77 13-96 13-95 (115)
278 3r27_A HnRNP L, heterogeneous 99.7 1.7E-16 5.7E-21 101.0 7.6 72 100-177 14-89 (100)
279 2dgx_A KIAA0430 protein; RRM d 99.7 3.5E-16 1.2E-20 99.5 9.0 71 104-177 6-82 (96)
280 2do0_A HnRNP M, heterogeneous 99.7 6.1E-16 2.1E-20 101.3 10.3 73 104-177 12-86 (114)
281 2lmi_A GRSF-1, G-rich sequence 99.7 1.3E-16 4.4E-21 103.5 7.0 74 104-178 8-85 (107)
282 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.7E-16 1.9E-20 107.0 10.7 74 104-177 36-111 (156)
283 2dgw_A Probable RNA-binding pr 99.7 6E-16 2E-20 97.3 9.7 72 104-177 7-79 (91)
284 1wel_A RNA-binding protein 12; 99.7 1.1E-16 3.6E-21 106.6 6.5 74 104-177 22-96 (124)
285 2m2b_A RNA-binding protein 10; 99.7 1.4E-16 4.7E-21 107.0 7.0 74 103-177 19-100 (131)
286 2ki2_A SS-DNA binding protein 99.7 7.9E-17 2.7E-21 101.2 5.4 69 108-177 2-72 (90)
287 2nlw_A Eukaryotic translation 99.7 4.4E-16 1.5E-20 100.6 8.7 71 105-177 13-92 (105)
288 2cq1_A PTB-like protein L; RRM 99.7 7.9E-16 2.7E-20 98.6 9.8 70 102-177 10-83 (101)
289 1fje_B Nucleolin RBD12, protei 99.7 6.1E-16 2.1E-20 108.3 10.2 80 11-95 94-174 (175)
290 2wbr_A GW182, gawky, LD47780P; 99.7 4.3E-16 1.5E-20 96.1 8.1 66 106-177 6-73 (89)
291 2dis_A Unnamed protein product 99.7 4.8E-16 1.6E-20 101.0 8.8 73 105-177 6-84 (109)
292 2ad9_A Polypyrimidine tract-bi 99.7 2.9E-16 1E-20 103.2 7.5 69 103-177 27-99 (119)
293 1x5o_A RNA binding motif, sing 99.7 1.7E-15 5.7E-20 99.2 11.0 72 103-175 21-94 (114)
294 2pe8_A Splicing factor 45; RRM 99.7 1.7E-15 5.9E-20 97.7 10.7 84 13-96 5-95 (105)
295 1x4a_A Splicing factor, argini 99.6 1.7E-15 5.7E-20 98.4 10.6 72 103-177 18-91 (109)
296 2err_A Ataxin-2-binding protei 99.6 3.9E-16 1.3E-20 101.5 7.6 75 101-177 23-99 (109)
297 2bz2_A Negative elongation fac 99.6 7.4E-16 2.5E-20 102.0 8.6 79 11-97 34-113 (121)
298 2voo_A Lupus LA protein; RNA-b 99.6 1.7E-15 5.9E-20 108.1 10.7 109 67-177 63-179 (193)
299 1wex_A Hypothetical protein (r 99.6 1.2E-15 4E-20 98.3 8.9 68 104-177 12-83 (104)
300 2dnl_A Cytoplasmic polyadenyla 99.6 6.3E-16 2.2E-20 101.3 7.1 70 105-176 6-79 (114)
301 3q2s_C Cleavage and polyadenyl 99.6 1.1E-15 3.7E-20 111.9 9.1 72 106-177 67-142 (229)
302 2cpi_A CCR4-NOT transcription 99.6 1.3E-15 4.3E-20 99.4 8.1 73 105-177 13-93 (111)
303 2dnq_A RNA-binding protein 4B; 99.6 2.8E-15 9.5E-20 94.0 9.4 66 104-177 5-72 (90)
304 1fj7_A Nucleolin RBD1, protein 99.6 2E-16 6.8E-21 101.4 4.0 73 104-177 14-87 (101)
305 1why_A Hypothetical protein ri 99.6 4.5E-15 1.5E-19 94.4 9.8 69 103-177 13-85 (97)
306 2fc9_A NCL protein; structure 99.6 3.2E-15 1.1E-19 95.7 9.1 71 103-177 11-83 (101)
307 3lqv_A PRE-mRNA branch site pr 99.6 3.4E-15 1.2E-19 97.8 9.4 71 104-177 5-77 (115)
308 2a3j_A U1 small nuclear ribonu 99.6 2.9E-15 9.9E-20 99.8 9.1 71 104-177 26-102 (127)
309 2dit_A HIV TAT specific factor 99.6 1.4E-14 4.7E-19 94.6 12.1 86 10-99 9-106 (112)
310 3u1l_A PRE-mRNA-splicing facto 99.6 1.3E-15 4.6E-20 111.4 7.7 80 12-97 130-231 (240)
311 2ytc_A PRE-mRNA-splicing facto 99.6 5.8E-15 2E-19 91.5 9.5 69 103-177 8-79 (85)
312 2cpx_A Hypothetical protein FL 99.6 4.1E-16 1.4E-20 102.2 4.3 75 103-177 21-97 (115)
313 2cpj_A Non-POU domain-containi 99.6 3.8E-15 1.3E-19 95.1 8.5 69 103-177 11-81 (99)
314 2j8a_A Histone-lysine N-methyl 99.6 1.7E-15 6E-20 99.6 6.9 70 108-177 3-88 (136)
315 2jvr_A Nucleolar protein 3; RN 99.6 2.2E-15 7.5E-20 98.1 7.0 68 106-177 27-97 (111)
316 1x4c_A Splicing factor, argini 99.6 7.5E-15 2.6E-19 95.2 9.5 63 105-174 13-77 (108)
317 2la4_A Nuclear and cytoplasmic 99.6 5E-15 1.7E-19 94.8 8.4 67 105-177 25-93 (101)
318 1x4g_A Nucleolysin TIAR; struc 99.6 5.4E-15 1.8E-19 96.0 8.5 67 105-177 23-91 (109)
319 2jvo_A Nucleolar protein 3; nu 99.6 4.3E-15 1.5E-19 96.4 7.8 69 101-177 25-95 (108)
320 2d9o_A DNAJ (HSP40) homolog, s 99.6 4.3E-14 1.5E-18 90.2 12.1 82 10-97 4-92 (100)
321 2f3j_A RNA and export factor b 99.6 6.8E-15 2.3E-19 103.6 9.1 73 104-177 85-159 (177)
322 3d2w_A TAR DNA-binding protein 99.6 5.6E-15 1.9E-19 92.5 7.8 68 104-177 8-76 (89)
323 1nu4_A U1A RNA binding domain; 99.6 2E-15 6.7E-20 96.0 5.8 71 104-177 5-81 (97)
324 2hvz_A Splicing factor, argini 99.6 2.8E-15 9.5E-20 96.0 6.5 65 108-177 1-67 (101)
325 1fjc_A Nucleolin RBD2, protein 99.6 4.3E-15 1.5E-19 94.2 7.2 70 103-177 12-83 (96)
326 2e5g_A U6 snRNA-specific termi 99.6 1.7E-14 5.8E-19 91.2 9.9 68 105-177 6-74 (94)
327 3pgw_A U1-A; protein-RNA compl 99.6 1.4E-14 4.8E-19 108.8 11.2 77 12-93 203-281 (282)
328 1whx_A Hypothetical protein ri 99.6 6.8E-15 2.3E-19 95.9 7.9 66 106-177 9-76 (111)
329 2e5j_A Methenyltetrahydrofolat 99.6 1E-14 3.5E-19 92.7 8.4 69 104-177 16-86 (97)
330 2lcw_A RNA-binding protein FUS 99.4 1.7E-16 5.8E-21 104.3 0.0 73 105-177 5-87 (116)
331 2dgt_A RNA-binding protein 30; 99.6 1.6E-14 5.4E-19 90.9 9.1 67 103-177 6-74 (92)
332 2hzc_A Splicing factor U2AF 65 99.6 1.2E-14 4.1E-19 90.4 8.4 68 104-177 3-82 (87)
333 2fc8_A NCL protein; structure 99.6 1.5E-14 5.2E-19 92.7 9.0 72 103-177 11-84 (102)
334 1qm9_A Polypyrimidine tract-bi 99.6 1.1E-14 3.8E-19 103.9 9.1 77 14-95 118-197 (198)
335 2dgu_A Heterogeneous nuclear r 99.6 1.2E-14 4.2E-19 93.4 8.4 66 104-177 8-75 (103)
336 2dnp_A RNA-binding protein 14; 99.6 1.4E-14 4.8E-19 90.8 8.4 67 103-177 5-73 (90)
337 2cpd_A Apobec-1 stimulating pr 99.6 3.3E-14 1.1E-18 90.7 10.2 68 102-177 10-81 (99)
338 3beg_B Splicing factor, argini 99.6 6.4E-15 2.2E-19 96.6 7.0 64 106-176 15-80 (115)
339 1x4d_A Matrin 3; structural ge 99.6 7.3E-15 2.5E-19 94.1 6.9 68 104-177 12-84 (102)
340 3tyt_A Heterogeneous nuclear r 99.6 9.7E-15 3.3E-19 105.1 7.7 77 14-92 121-204 (205)
341 2xnq_A Nuclear polyadenylated 99.6 2.9E-14 9.8E-19 90.7 9.0 67 103-177 18-87 (97)
342 2cq2_A Hypothetical protein LO 99.5 1.2E-14 4E-19 94.7 7.2 64 103-172 21-88 (114)
343 2pe8_A Splicing factor 45; RRM 99.5 5.4E-14 1.8E-18 90.7 10.1 74 104-177 5-86 (105)
344 3v4m_A Splicing factor U2AF 65 99.5 4E-14 1.4E-18 91.3 9.4 82 14-95 3-97 (105)
345 2adc_A Polypyrimidine tract-bi 99.5 3.3E-14 1.1E-18 103.9 10.1 77 14-95 149-228 (229)
346 1x4f_A Matrin 3; structural ge 99.5 2.1E-14 7.1E-19 93.4 7.9 68 104-177 22-94 (112)
347 1wf0_A TDP-43, TAR DNA-binding 99.5 5.4E-15 1.9E-19 92.3 4.9 67 105-177 3-70 (88)
348 3sde_A Paraspeckle component 1 99.5 3.1E-14 1E-18 106.1 9.8 82 15-97 95-181 (261)
349 2kvi_A Nuclear polyadenylated 99.5 2.8E-14 9.5E-19 90.5 7.9 67 103-177 6-75 (96)
350 1wf1_A RNA-binding protein RAL 99.5 2.1E-14 7.1E-19 93.4 7.3 84 83-177 6-92 (110)
351 1x5p_A Negative elongation fac 99.5 8.8E-14 3E-18 88.4 9.6 67 104-177 12-79 (97)
352 1wg1_A KIAA1579 protein, homol 99.5 2E-14 6.8E-19 89.8 6.3 65 106-177 4-70 (88)
353 2cqh_A IGF-II mRNA-binding pro 99.5 1.1E-14 3.9E-19 91.8 5.1 67 104-177 5-75 (93)
354 2e44_A Insulin-like growth fac 99.5 5.1E-14 1.7E-18 89.2 7.8 69 105-177 13-84 (96)
355 3egn_A RNA-binding protein 40; 99.5 8.1E-15 2.8E-19 99.7 4.1 71 104-177 42-122 (143)
356 1jmt_A Splicing factor U2AF 35 99.5 1.1E-14 3.7E-19 93.8 4.4 71 21-92 20-103 (104)
357 3ue2_A Poly(U)-binding-splicin 99.5 8.9E-14 3E-18 91.4 8.4 80 15-94 19-108 (118)
358 1sjr_A Polypyrimidine tract-bi 99.5 1.3E-13 4.6E-18 95.0 9.4 66 105-174 44-111 (164)
359 3zzy_A Polypyrimidine tract-bi 99.5 4.1E-13 1.4E-17 89.3 8.8 64 106-174 27-93 (130)
360 2diu_A KIAA0430 protein; struc 99.5 4E-13 1.4E-17 83.6 8.1 63 105-177 6-76 (96)
361 2bz2_A Negative elongation fac 99.4 3.1E-13 1.1E-17 89.3 7.5 67 104-177 36-103 (121)
362 2e5i_A Heterogeneous nuclear r 99.4 1E-12 3.6E-17 86.9 9.7 62 108-175 26-90 (124)
363 3tht_A Alkylated DNA repair pr 99.4 7.8E-13 2.7E-17 101.6 10.4 77 11-93 13-97 (345)
364 3v4m_A Splicing factor U2AF 65 99.4 5.5E-13 1.9E-17 85.9 8.1 73 105-177 3-89 (105)
365 3u1l_A PRE-mRNA-splicing facto 99.4 7.3E-13 2.5E-17 97.0 8.8 63 104-172 131-204 (240)
366 3ue2_A Poly(U)-binding-splicin 99.4 1.8E-12 6.1E-17 85.1 8.2 72 106-177 19-101 (118)
367 1jmt_A Splicing factor U2AF 35 99.4 4.5E-13 1.5E-17 86.2 5.1 65 112-177 20-98 (104)
368 2dit_A HIV TAT specific factor 99.4 3.9E-12 1.3E-16 82.8 9.4 71 103-177 11-94 (112)
369 3s6e_A RNA-binding protein 39; 99.3 1.4E-11 5E-16 80.3 9.0 77 14-94 5-92 (114)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 4.9E-11 1.7E-15 75.9 10.3 54 118-177 29-82 (100)
371 3tht_A Alkylated DNA repair pr 99.3 1E-11 3.6E-16 95.4 8.5 66 101-172 12-81 (345)
372 3s6e_A RNA-binding protein 39; 99.2 7.1E-11 2.4E-15 77.0 7.6 69 105-177 5-85 (114)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 4.4E-10 1.5E-14 69.3 9.4 73 17-97 8-88 (91)
374 1owx_A Lupus LA protein, SS-B, 99.1 3.4E-10 1.2E-14 74.1 8.3 80 9-94 11-95 (121)
375 1owx_A Lupus LA protein, SS-B, 99.1 8.6E-10 2.9E-14 72.2 8.1 66 105-176 16-87 (121)
376 1ufw_A Synaptojanin 2; RNP dom 98.9 2E-09 6.9E-14 66.7 5.8 71 16-94 15-94 (95)
377 2dnr_A Synaptojanin-1; RRM dom 98.9 6.2E-09 2.1E-13 64.2 6.3 65 105-177 5-78 (91)
378 3dxb_A Thioredoxin N-terminall 98.8 7.7E-09 2.6E-13 75.0 6.7 66 29-94 142-212 (222)
379 3dxb_A Thioredoxin N-terminall 98.8 1.4E-08 4.9E-13 73.5 7.5 60 118-177 141-205 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.7 1.5E-07 5.2E-12 59.6 9.6 73 13-91 18-96 (117)
381 1ufw_A Synaptojanin 2; RNP dom 98.7 1.6E-08 5.3E-13 62.7 4.6 65 105-177 13-87 (95)
382 2dhx_A Poly (ADP-ribose) polym 98.6 4.7E-07 1.6E-11 56.8 9.7 88 12-117 4-96 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.5 3.9E-07 1.3E-11 57.7 7.4 66 106-177 20-92 (117)
384 1wey_A Calcipressin 1; structu 98.2 1.5E-05 5.2E-10 50.1 8.6 77 15-97 4-86 (104)
385 1wwh_A Nucleoporin 35, nucleop 98.2 1.6E-05 5.4E-10 51.4 8.7 65 105-175 22-86 (119)
386 1whv_A Poly(A)-specific ribonu 98.2 1.1E-05 3.6E-10 50.1 7.4 56 13-77 13-68 (100)
387 1wwh_A Nucleoporin 35, nucleop 98.1 3.5E-05 1.2E-09 49.8 9.0 77 11-94 19-96 (119)
388 2dhx_A Poly (ADP-ribose) polym 98.0 7.8E-05 2.7E-09 46.7 8.7 65 105-177 6-76 (104)
389 3ctr_A Poly(A)-specific ribonu 98.0 1.5E-05 5.3E-10 49.5 5.2 52 17-77 7-58 (101)
390 1uw4_A UPF3X; nonsense mediate 97.8 0.00016 5.4E-09 44.6 8.1 67 17-83 2-71 (91)
391 1uw4_A UPF3X; nonsense mediate 97.6 0.00039 1.4E-08 42.8 7.7 67 108-174 2-72 (91)
392 3p3d_A Nucleoporin 53; structu 97.5 0.00021 7E-09 46.9 5.0 68 108-175 8-89 (132)
393 3p3d_A Nucleoporin 53; structu 97.4 0.00025 8.4E-09 46.5 5.1 79 16-95 7-99 (132)
394 1whv_A Poly(A)-specific ribonu 97.3 0.0012 4E-08 41.0 6.6 54 105-167 14-68 (100)
395 3pq1_A Poly(A) RNA polymerase; 97.2 0.00022 7.6E-09 56.7 3.6 58 15-78 52-109 (464)
396 2l08_A Regulator of nonsense t 97.1 0.00073 2.5E-08 42.0 4.3 70 14-83 7-79 (97)
397 3ctr_A Poly(A)-specific ribonu 97.0 0.0018 6E-08 40.3 5.5 52 107-167 6-58 (101)
398 2l08_A Regulator of nonsense t 96.9 0.0021 7E-08 39.9 5.3 68 107-174 9-80 (97)
399 3pq1_A Poly(A) RNA polymerase; 96.9 0.00054 1.8E-08 54.5 3.2 58 105-167 51-108 (464)
400 1wey_A Calcipressin 1; structu 96.4 0.013 4.6E-07 36.7 6.3 65 107-177 5-76 (104)
401 3d45_A Poly(A)-specific ribonu 94.3 0.16 5.6E-06 41.0 7.8 53 16-77 440-492 (507)
402 3d45_A Poly(A)-specific ribonu 89.1 1.9 6.6E-05 34.7 8.2 53 106-167 439-492 (507)
403 4e8u_A Putative uncharacterize 54.4 37 0.0013 23.1 5.7 38 118-158 33-72 (172)
404 2v94_A RPS24, 30S ribosomal pr 46.6 50 0.0017 20.5 5.5 47 26-73 37-88 (107)
405 1xn9_A 30S ribosomal protein S 45.9 50 0.0017 20.3 5.8 48 26-74 28-80 (101)
406 1ywx_A 30S ribosomal protein S 44.7 53 0.0018 20.2 5.7 47 26-73 28-79 (102)
407 2xzm_P RPS24E; ribosome, trans 34.4 97 0.0033 20.5 5.1 47 26-73 31-82 (149)
408 2i9x_A Putative septation prot 34.0 62 0.0021 19.3 3.8 26 42-67 5-30 (87)
409 3fut_A Dimethyladenosine trans 32.9 54 0.0019 23.8 4.2 33 17-50 111-143 (271)
410 1ytr_A Bacteriocin plantaricin 30.9 29 0.00098 15.0 1.4 14 118-131 12-25 (26)
411 2rf4_B DNA-directed RNA polyme 30.6 54 0.0018 19.5 3.0 29 12-40 15-43 (87)
412 2ia9_A Putative septation prot 29.9 76 0.0026 19.4 3.8 26 42-67 5-30 (100)
413 4eyt_A Telomerase associated p 29.6 94 0.0032 18.6 7.1 54 16-77 12-65 (129)
414 2i9z_A Putative septation prot 28.9 82 0.0028 19.5 3.9 26 42-67 5-30 (105)
415 2eqj_A Metal-response element- 28.4 47 0.0016 18.7 2.4 10 149-158 42-51 (66)
416 3u5c_Y RP50, 40S ribosomal pro 27.9 1.3E+02 0.0043 19.6 6.0 46 27-73 34-84 (135)
417 2g1d_A 30S ribosomal protein S 27.7 47 0.0016 20.3 2.6 47 26-73 29-80 (98)
418 2e5p_A Protein PHF1, PHD finge 27.0 28 0.00096 19.6 1.3 9 150-158 39-47 (68)
419 3uzu_A Ribosomal RNA small sub 26.1 37 0.0013 24.8 2.3 34 17-50 115-148 (279)
420 2m0o_A PHD finger protein 1; t 25.6 30 0.001 20.1 1.3 9 150-158 56-64 (79)
421 3mfb_A Uncharacterized protein 24.6 1.4E+02 0.0049 19.8 4.7 36 28-63 3-41 (157)
422 3fry_A Probable copper-exporti 23.1 98 0.0034 16.6 6.0 58 16-80 6-63 (73)
423 3tqs_A Ribosomal RNA small sub 22.0 37 0.0013 24.4 1.6 32 19-50 99-130 (255)
424 3swz_A Steroid 17-alpha-hydrox 21.7 82 0.0028 24.4 3.7 59 19-86 17-79 (494)
425 1i4w_A Mitochondrial replicati 21.3 78 0.0027 24.1 3.3 23 17-39 143-165 (353)
426 3d53_A Inorganic pyrophosphata 20.0 1.1E+02 0.0038 20.7 3.5 42 115-167 127-168 (173)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.8e-39 Score=231.89 Aligned_cols=170 Identities=56% Similarity=0.978 Sum_probs=149.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEE
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i 87 (178)
..+.++...++|||+|||+++|+++|+++|+.||+|.+++++.++.++.++|||||.|.+.++|.+|++.++..+.|+.|
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l 84 (196)
T 1l3k_A 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84 (196)
T ss_dssp ---CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEEC
T ss_pred cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEe
Confidence 34556778999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EEeecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHH
Q psy2871 88 ETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVL 166 (178)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~ 166 (178)
.|.++...............++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+.
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 999998776655555556778999999999 9999999999999999999999998889999999999999999999999
Q ss_pred hcCeecccccc
Q psy2871 167 SKITLLLDRRV 177 (178)
Q Consensus 167 ~~~~~~~g~~v 177 (178)
.++..++|++|
T Consensus 165 ~~~~~~~G~~i 175 (196)
T 1l3k_A 165 QKYHTVNGHNC 175 (196)
T ss_dssp CSCCEETTEEC
T ss_pred hCCcEECCEEE
Confidence 98899999876
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.7e-37 Score=222.50 Aligned_cols=159 Identities=23% Similarity=0.457 Sum_probs=141.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
..+.++|||+|||+++|+++|+++|++||+|.++++++++.+++++|||||+|.+.++|.+|++. ++..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999988 89999999999998
Q ss_pred cCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cC
Q psy2871 92 AVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KI 169 (178)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~ 169 (178)
+...... ......+|||+|||. +++++|+++|+.||.|..+.++.+. +.++|||||+|.+.++|.+|++. ++
T Consensus 92 ~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 92 SQRDPSL----RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp CCCCTHH----HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccccccc----cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 8654332 123346899999999 9999999999999999999999885 45799999999999999999987 88
Q ss_pred eecccccc
Q psy2871 170 TLLLDRRV 177 (178)
Q Consensus 170 ~~~~g~~v 177 (178)
..++|++|
T Consensus 166 ~~~~g~~i 173 (213)
T 4f02_A 166 MLLNDRKV 173 (213)
T ss_dssp CEETTEEC
T ss_pred CEECCEEE
Confidence 88999876
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=210.13 Aligned_cols=156 Identities=23% Similarity=0.456 Sum_probs=143.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCC
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~ 95 (178)
|+|||+|||+++|+++|+++|++||+|.++++..++ ++.++|||||+|.+.++|..|++. ++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999988 577999999999999999999966 999999999999998765
Q ss_pred cccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecc
Q psy2871 96 DEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLL 173 (178)
Q Consensus 96 ~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~ 173 (178)
.. ....+..+|||+|||. +++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|.+|+.. ++..+.
T Consensus 80 ~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 155 (166)
T 3md3_A 80 QQ----SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 155 (166)
T ss_dssp CC----CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CC----CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 43 2345667999999999 99999999999999999999999988899999999999999999999996 888888
Q ss_pred cccc
Q psy2871 174 DRRV 177 (178)
Q Consensus 174 g~~v 177 (178)
|++|
T Consensus 156 g~~i 159 (166)
T 3md3_A 156 GRPL 159 (166)
T ss_dssp TEEC
T ss_pred CcEE
Confidence 8876
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.1e-36 Score=208.77 Aligned_cols=156 Identities=23% Similarity=0.432 Sum_probs=144.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
++++|||+|||+++++++|+++|+.||+|.++++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 368999999999999999999999999999999999998999999999999999999999996 9999999999999987
Q ss_pred CCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCee
Q psy2871 94 PRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITL 171 (178)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~ 171 (178)
+... ....++|+|+|||. +++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|.+|+.. ++..
T Consensus 81 ~~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 81 PSSA------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp CCCG------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCcc------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 6543 34557899999999 99999999999999999999999988899999999999999999999997 7788
Q ss_pred ccccc
Q psy2871 172 LLDRR 176 (178)
Q Consensus 172 ~~g~~ 176 (178)
+.|+.
T Consensus 155 ~~g~~ 159 (167)
T 1fxl_A 155 PSGAT 159 (167)
T ss_dssp CTTCS
T ss_pred cCCCc
Confidence 88865
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5.3e-36 Score=209.84 Aligned_cols=157 Identities=22% Similarity=0.372 Sum_probs=144.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
++++|||+|||+++++++|+++|+.||+|.++++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 578999999999999999999999999999999999988999999999999999999999986 9999999999999987
Q ss_pred CCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCee
Q psy2871 94 PRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITL 171 (178)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~ 171 (178)
+... ....++|+|+|||. +++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|.+|+.. ++..
T Consensus 82 ~~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 155 (168)
T 1b7f_A 82 PGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 155 (168)
T ss_dssp CCSS------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCcc------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE
Confidence 6543 34567999999999 99999999999999999999999988899999999999999999999997 7777
Q ss_pred ccc--ccc
Q psy2871 172 LLD--RRV 177 (178)
Q Consensus 172 ~~g--~~v 177 (178)
+.| ++|
T Consensus 156 ~~g~~~~l 163 (168)
T 1b7f_A 156 PEGGSQPL 163 (168)
T ss_dssp CTTCSSCC
T ss_pred ecCCCeEE
Confidence 877 554
No 6
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=7.9e-37 Score=213.95 Aligned_cols=156 Identities=40% Similarity=0.829 Sum_probs=143.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 94 (178)
++++|||+|||+++|+++|+++|++||+|.+++++.++.++.++|||||.|.+.++|.+|++. +..+.|+.|.+.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 578999999999999999999999999999999999988999999999999999999999996 5789999999998865
Q ss_pred CcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecc
Q psy2871 95 RDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLL 173 (178)
Q Consensus 95 ~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~ 173 (178)
... ..+.++|||+|||. +++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|.+|++.++..+.
T Consensus 81 ~~~------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~ 154 (167)
T 2cjk_A 81 RDE------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFK 154 (167)
T ss_dssp HHH------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSS
T ss_pred hhh------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeC
Confidence 432 23457899999999 99999999999999999999999988899999999999999999999998888888
Q ss_pred cccc
Q psy2871 174 DRRV 177 (178)
Q Consensus 174 g~~v 177 (178)
|++|
T Consensus 155 g~~i 158 (167)
T 2cjk_A 155 DRKI 158 (167)
T ss_dssp SSCE
T ss_pred CeEE
Confidence 8876
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.7e-35 Score=215.19 Aligned_cols=164 Identities=21% Similarity=0.465 Sum_probs=143.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
...++|||+|||+++|+++|+++|+.||+|.+++++.++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 3467999999999999999999999999999999999988899999999999999999999996 899999999999887
Q ss_pred CCCcccCC-----CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHH
Q psy2871 93 VPRDEIGK-----PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVL 166 (178)
Q Consensus 93 ~~~~~~~~-----~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~ 166 (178)
........ .......++|||+|||. +++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 65543211 01123557999999999 9999999999999999999999998889999999999999999999999
Q ss_pred h-cCeecccccc
Q psy2871 167 S-KITLLLDRRV 177 (178)
Q Consensus 167 ~-~~~~~~g~~v 177 (178)
. ++..+.|++|
T Consensus 186 ~l~g~~~~g~~i 197 (216)
T 2qfj_A 186 SMNLFDLGGQYL 197 (216)
T ss_dssp HHTTCBCSSSBC
T ss_pred HccCCEeCCcEE
Confidence 7 8888888876
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.7e-34 Score=201.57 Aligned_cols=154 Identities=23% Similarity=0.456 Sum_probs=134.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCC--CccceEEEEeCCHHHHHHHHhc-CCceec---CeEEE
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK--RSRGFGFITYSEAKMVDDAMSN-RPHNID---GRVVE 88 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~~i~ 88 (178)
+.++|||+|||+++|+++|+++|++||+|.+++++.++.++ .++|||||+|.+.++|.+|++. ++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 8999999999999999999987 666554 56777
Q ss_pred EeecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 89 TKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
+.++..... .....++|||+|||. +++++|+++|++||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..
T Consensus 82 ~~~~~~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEKN-----NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGCC-----SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Ecccccccc-----ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 777654432 234667999999999 9999999999999999999999986 488999999999999999999988
Q ss_pred -cCeeccc
Q psy2871 168 -KITLLLD 174 (178)
Q Consensus 168 -~~~~~~g 174 (178)
++..+.+
T Consensus 156 l~g~~~~~ 163 (175)
T 3nmr_A 156 MHQAQTME 163 (175)
T ss_dssp HTTSCCCT
T ss_pred hcCCcccC
Confidence 5555553
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.2e-33 Score=197.27 Aligned_cols=152 Identities=24% Similarity=0.548 Sum_probs=136.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCcee
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQW----G-------EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNI 82 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~ 82 (178)
.+.++|||+|||+++|+++|+++|++| | .|.++++.. ++|||||+|.+.++|.+|+..++..+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 357899999999999999999999999 6 777777654 46999999999999999996699999
Q ss_pred cCeEEEEeecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHH
Q psy2871 83 DGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVV 161 (178)
Q Consensus 83 ~g~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a 161 (178)
.|+.|.|.++..... ....++|||+|||. +++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|
T Consensus 76 ~g~~i~v~~~~~~~~------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp TTEECEEECCSSCCC------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred cCceeeecCCcccCC------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 999999998765432 23467899999999 99999999999999999999999988899999999999999999
Q ss_pred HHHHHh-cCeecccccc
Q psy2871 162 DKIVLS-KITLLLDRRV 177 (178)
Q Consensus 162 ~~a~~~-~~~~~~g~~v 177 (178)
.+|+.. ++..+.|++|
T Consensus 150 ~~A~~~l~g~~~~g~~l 166 (172)
T 2g4b_A 150 DQAIAGLNGMQLGDKKL 166 (172)
T ss_dssp HHHHHHHTTCEETTEEC
T ss_pred HHHHHHcCCCEECCeEE
Confidence 999997 8888988876
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.7e-32 Score=196.82 Aligned_cols=158 Identities=23% Similarity=0.526 Sum_probs=136.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCcee
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQW----G-------EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNI 82 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~ 82 (178)
..+++|||+|||+++++++|+++|+.| | .|.++++. .++|||||+|.+.++|.+|+..++..+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 357899999999999999999999999 5 66666653 457999999999999999996699999
Q ss_pred cCeEEEEeecCCCcccCC--------------CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCc
Q psy2871 83 DGRVVETKRAVPRDEIGK--------------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAK 147 (178)
Q Consensus 83 ~g~~i~v~~~~~~~~~~~--------------~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~ 147 (178)
.|+.|.|.++........ .......++|||+|||. +++++|+++|++||.|..+.+..+..++.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 999999998876532211 11124568999999999 999999999999999999999999888999
Q ss_pred eeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 148 RGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 148 ~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
+|+|||+|.+.++|.+|+.. ++..+.|++|
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 186 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 186 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEEC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 99999999999999999997 8888888876
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.3e-33 Score=199.17 Aligned_cols=157 Identities=22% Similarity=0.326 Sum_probs=135.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEe
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~ 90 (178)
..+.+.++|||+|||+++++++|+++|+.||.+..+ ++.+..++.++|||||+|.+.++|.+|++.++..+.|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 466778999999999999999999999999887662 3333346789999999999999999999779999999999999
Q ss_pred ecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-c
Q psy2871 91 RAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-K 168 (178)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~ 168 (178)
++.+... ......++|||+|||. +++++|+++|++||.|..+ ..++.++|+|||+|.+.++|.+|+.. +
T Consensus 87 ~~~~~~~----~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 87 KPKGRDS----KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp CCCCSSC----STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred cCCCccc----cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 9876543 2345678999999999 9999999999999998776 34678899999999999999999997 8
Q ss_pred Ceecccccc
Q psy2871 169 ITLLLDRRV 177 (178)
Q Consensus 169 ~~~~~g~~v 177 (178)
+..+.|++|
T Consensus 158 g~~~~g~~i 166 (175)
T 1fje_B 158 GAEIDGRSV 166 (175)
T ss_dssp EEEETTEEE
T ss_pred CCEECCeEE
Confidence 888888875
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.2e-32 Score=199.22 Aligned_cols=154 Identities=13% Similarity=0.169 Sum_probs=131.0
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 15 SLRKVFIGGLD-YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 15 ~~~~l~v~nlp-~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
++++|||+||| ..+++++|+++|++||.|.+++++.+ .+|||||+|.+.++|.+|++. ++..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 79999999999999999999999865 379999999999999999997 999999999999988
Q ss_pred CCCcccCCC-------------------------------CCCCcccEEEEeCCCc-ccHHHHHHHhhccCce--eEEEe
Q psy2871 93 VPRDEIGKP-------------------------------EANATVKKMFVGGLKD-QEEDDLREYFSQFGTI--ESVNM 138 (178)
Q Consensus 93 ~~~~~~~~~-------------------------------~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v--~~~~i 138 (178)
......... ....+.++|||+|||. +++++|+++|++||.| ..+++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 643211000 0013456899999999 9999999999999999 89998
Q ss_pred eeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccc
Q psy2871 139 VTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDR 175 (178)
Q Consensus 139 ~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~ 175 (178)
..+. +.++|+|||+|.+.++|.+|+.. ++..+.|.
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 8765 45569999999999999999998 66677765
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.3e-32 Score=205.72 Aligned_cols=159 Identities=15% Similarity=0.211 Sum_probs=144.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
..++|||+|||+++++++|+++|+.||.|..++++.+..++.++|||||.|.+.++|.+|++. ++..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 457999999999999999999999999999999999988999999999999999999999976 9999999999999997
Q ss_pred CCcccCCCCCCCcccEEEEeCCCc-c-cHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCe
Q psy2871 94 PRDEIGKPEANATVKKMFVGGLKD-Q-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KIT 170 (178)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~v~~l~~-~-t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~ 170 (178)
+.... ......++|||+|||. + ++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|+.. ++.
T Consensus 174 ~~~~~---~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 174 AGQLT---PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp GGGCC---TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCC---cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 76543 2335668899999998 6 899999999999999999999887 688999999999999999999997 888
Q ss_pred ecccccc
Q psy2871 171 LLLDRRV 177 (178)
Q Consensus 171 ~~~g~~v 177 (178)
.+.|++|
T Consensus 250 ~~~g~~l 256 (284)
T 3smz_A 250 SLGGSHL 256 (284)
T ss_dssp EETTEEC
T ss_pred ccCCeEE
Confidence 8888875
No 14
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=7.4e-32 Score=201.78 Aligned_cols=143 Identities=25% Similarity=0.409 Sum_probs=130.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
.+......+.++|||+|||+++|+++|+++|+.||.|..+.+.++ +|||||.|.+.++|..|+.. ++..+.|+
T Consensus 13 ~p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 86 (261)
T 3sde_A 13 KPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSR 86 (261)
T ss_dssp CTTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCc
Confidence 334445667789999999999999999999999999999999653 59999999999999999996 99999999
Q ss_pred EEEEeecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHH
Q psy2871 86 VVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164 (178)
Q Consensus 86 ~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a 164 (178)
.|.|.++.+ ..+|||+|||. +++++|+++|+.||.|..+.++.+ .++.++|+|||+|.+.++|.+|
T Consensus 87 ~l~v~~a~~------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A 153 (261)
T 3sde_A 87 PLRIRFATH------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKA 153 (261)
T ss_dssp ECEEEECCC------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHH
T ss_pred eeEeeeccc------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHH
Confidence 999999864 35799999999 999999999999999999999999 4789999999999999999999
Q ss_pred HHhc
Q psy2871 165 VLSK 168 (178)
Q Consensus 165 ~~~~ 168 (178)
+..+
T Consensus 154 ~~~l 157 (261)
T 3sde_A 154 LERC 157 (261)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9984
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=2.4e-31 Score=200.84 Aligned_cols=158 Identities=20% Similarity=0.362 Sum_probs=134.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
+...+++|||+|||+++++++|+ ++|+.||.|.+|++.. ++.++|||||+|.+.++|.+|++. ++..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 55678999999999999999966 8999999999999876 677999999999999999999977 899999999
Q ss_pred EEEeecCCCcccC-------------------------------------------------------------------
Q psy2871 87 VETKRAVPRDEIG------------------------------------------------------------------- 99 (178)
Q Consensus 87 i~v~~~~~~~~~~------------------------------------------------------------------- 99 (178)
|+|.++.......
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 9999886544200
Q ss_pred --------------------------------------CCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeee
Q psy2871 100 --------------------------------------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVT 140 (178)
Q Consensus 100 --------------------------------------~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~ 140 (178)
......+.++|||+|||. +++++|+++|++||.|..+.+..
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 001122457899999999 99999999999999999999985
Q ss_pred CCCCCCceeEEEEEECCHHHHHHHHHh-cCeecc-cccc
Q psy2871 141 NKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLL-DRRV 177 (178)
Q Consensus 141 ~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~-g~~v 177 (178)
+. +|+|||+|.+.++|.+|+.. ++..+. |++|
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 275 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAM 275 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence 53 47999999999999999997 667777 7664
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=7.8e-32 Score=204.40 Aligned_cols=162 Identities=18% Similarity=0.319 Sum_probs=135.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
..++|||+|||+++++++|+++|+.|| +|..+++..+.. +.++|||||.|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999998874 78999999999999999999996 999999999999999
Q ss_pred CCCcccCCC-CCCCcccEEEEeCCCc--ccHHHHHHHhhccCceeEEEeeeCCC-CCCceeEEEEEECCHHHHHHHHHhc
Q psy2871 93 VPRDEIGKP-EANATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKE-TGAKRGFAFIEFNDYDVVDKIVLSK 168 (178)
Q Consensus 93 ~~~~~~~~~-~~~~~~~~l~v~~l~~--~t~~~l~~~f~~~G~v~~~~i~~~~~-~~~~~g~afv~F~~~~~a~~a~~~~ 168 (178)
.+....... ......++|||+|||. +++++|+++|++||.|..+.++.+.. ++.++|+|||+|.+.++|.+|+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~ 274 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMN 274 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGT
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhc
Confidence 877655444 4556778999999985 79999999999999999999998875 5899999999999999999999448
Q ss_pred Ceecccccc
Q psy2871 169 ITLLLDRRV 177 (178)
Q Consensus 169 ~~~~~g~~v 177 (178)
+..+.|++|
T Consensus 275 g~~~~g~~i 283 (292)
T 2ghp_A 275 RSLLGNREI 283 (292)
T ss_dssp TEEETTEEE
T ss_pred CCEECCcEE
Confidence 888988876
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=2.6e-31 Score=195.25 Aligned_cols=156 Identities=15% Similarity=0.270 Sum_probs=133.2
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 12 EPESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
...++++|||+|||+ ++++++|+++|+.||.|.++++..++ +|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345688999999999 99999999999999999999998864 78999999999999999986 999999999999
Q ss_pred eecCCCcccCCC-----------------------------CCCCcccEEEEeCCCc-ccHHHHHHHhhccC-ceeEEEe
Q psy2871 90 KRAVPRDEIGKP-----------------------------EANATVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNM 138 (178)
Q Consensus 90 ~~~~~~~~~~~~-----------------------------~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G-~v~~~~i 138 (178)
.++......... ....+.++|||+|||. +++++|+++|++|| .|..+.+
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 988754211100 0123468999999999 99999999999999 9999998
Q ss_pred eeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecc-cccc
Q psy2871 139 VTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLL-DRRV 177 (178)
Q Consensus 139 ~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~-g~~v 177 (178)
..+ .+|+|||+|.+.++|.+|+.. ++..+. |++|
T Consensus 185 ~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l 220 (229)
T 2adc_A 185 FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHL 220 (229)
T ss_dssp CSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred EEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeE
Confidence 653 246999999999999999997 777787 7765
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=1.5e-31 Score=202.88 Aligned_cols=153 Identities=13% Similarity=0.187 Sum_probs=128.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~ 88 (178)
....+.+.++|||+|||+++|+++|+++|+.||+|.++++..+..+ ++|||||+|.+.++|.+|++.++..+.|+.|.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEII 111 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEE
Confidence 3445667899999999999999999999999999999999998733 47999999999999999998799999999999
Q ss_pred EeecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccC-ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHH
Q psy2871 89 TKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVL 166 (178)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~ 166 (178)
|.++ ..++|||+|||. +++++|+++|+.|| .|..+.++.+.. +.++|||||+|.+.++|.+|+.
T Consensus 112 v~~~-------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 112 VSHL-------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp EEEC-------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHH
T ss_pred EEEC-------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHH
Confidence 9986 257899999999 99999999999999 999999998875 7789999999999999999999
Q ss_pred h-cCeecccccc
Q psy2871 167 S-KITLLLDRRV 177 (178)
Q Consensus 167 ~-~~~~~~g~~v 177 (178)
. ++..+.|++|
T Consensus 178 ~l~g~~~~g~~l 189 (292)
T 2ghp_A 178 KLNGLKIEGYTL 189 (292)
T ss_dssp HHTTCEETTEEC
T ss_pred HhCCCEeCCcEE
Confidence 5 8888888765
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=6.1e-31 Score=198.74 Aligned_cols=145 Identities=19% Similarity=0.336 Sum_probs=132.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
.++++|||+|||+++|+++|+++|+.|| |.++.+ +.++|||||.|.+.++|..|++. ++..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4578999999999999999999999999 999887 34679999999999999999987 999999999999985
Q ss_pred CCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCe
Q psy2871 93 VPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KIT 170 (178)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~ 170 (178)
. ..++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+.. ++.
T Consensus 93 ~------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 93 P------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp C------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred C------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 4 336899999999 99999999999999999999999988899999999999999999999966 888
Q ss_pred ecccccc
Q psy2871 171 LLLDRRV 177 (178)
Q Consensus 171 ~~~g~~v 177 (178)
.+.|++|
T Consensus 161 ~~~g~~i 167 (284)
T 3smz_A 161 PLGPRTL 167 (284)
T ss_dssp EETTEEC
T ss_pred EeCCcEE
Confidence 8888765
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=2.3e-31 Score=191.23 Aligned_cols=153 Identities=15% Similarity=0.278 Sum_probs=131.3
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 15 SLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 15 ~~~~l~v~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
++++|||+|||+ ++++++|+++|+.||.|.++++..++ +|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998764 68999999999999999986 999999999999988
Q ss_pred CCCcccCCC-----------------------------CCCCcccEEEEeCCCc-ccHHHHHHHhhccC-ceeEEEeeeC
Q psy2871 93 VPRDEIGKP-----------------------------EANATVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTN 141 (178)
Q Consensus 93 ~~~~~~~~~-----------------------------~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G-~v~~~~i~~~ 141 (178)
......... ....+.++|||+|||. +++++|+++|++|| .|..+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 754211100 1123478999999999 99999999999999 9999998664
Q ss_pred CCCCCceeEEEEEECCHHHHHHHHHh-cCeecc-cccc
Q psy2871 142 KETGAKRGFAFIEFNDYDVVDKIVLS-KITLLL-DRRV 177 (178)
Q Consensus 142 ~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~-g~~v 177 (178)
. +|+|||+|.+.++|.+|+.. ++..+. |++|
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 189 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHL 189 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeE
Confidence 2 57999999999999999997 777787 7765
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=3.1e-24 Score=141.46 Aligned_cols=107 Identities=19% Similarity=0.336 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
..+.+|||+|||+++++++|+++|++||.|.+++++.++ +.++|||||.|.+.++|++|++. ++..+.|+.|.|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 346789999999999999999999999999999999985 34789999999999999999987 999999999999998
Q ss_pred CCCcccCCCC--CCCcccEEEEeCCCc-ccHHH
Q psy2871 93 VPRDEIGKPE--ANATVKKMFVGGLKD-QEEDD 122 (178)
Q Consensus 93 ~~~~~~~~~~--~~~~~~~l~v~~l~~-~t~~~ 122 (178)
.+........ .....++|||+|||. +|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 7765443322 223456799999998 88763
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=8.8e-23 Score=141.59 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=100.1
Q ss_pred EEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CC-ceecCeEE------EEeecCCCcccCCCCCCCcccEEEEeCCC
Q psy2871 45 DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP-HNIDGRVV------ETKRAVPRDEIGKPEANATVKKMFVGGLK 116 (178)
Q Consensus 45 ~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~-~~~~g~~i------~v~~~~~~~~~~~~~~~~~~~~l~v~~l~ 116 (178)
++.++.+. ..++|||||+|.+.++|++|++. ++ ..+.+... ....................++|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 34555654 36899999999999999999976 32 22222211 11111122222233334567899999999
Q ss_pred c-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 117 D-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 117 ~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 9 99999999999999999999999988899999999999999999999987 7888888876
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=130.53 Aligned_cols=80 Identities=21% Similarity=0.445 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
..++|||+|||+++|+++|+++|++||+|.++++.+++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 356899999999999999999999999999999999998999999999999999999999987 9999999999999987
Q ss_pred C
Q psy2871 94 P 94 (178)
Q Consensus 94 ~ 94 (178)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=8.8e-23 Score=129.02 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc--CCceecCeEEEEeec
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGRVVETKRA 92 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~--~~~~~~g~~i~v~~~ 92 (178)
+++|||+|||+++|+++|+++|++|| +|.++++++++.++.++|||||+|.+.++|.+|++. ++..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 899999999998999999999999999999999986 456799999999999
Q ss_pred CCCccc
Q psy2871 93 VPRDEI 98 (178)
Q Consensus 93 ~~~~~~ 98 (178)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=126.79 Aligned_cols=85 Identities=14% Similarity=0.355 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.+.+.++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||.|.+.++|.+|++. ++..+.|+.|+|.
T Consensus 2 g~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 2 GQIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345688999999999999999999999999999999999998999999999999999999999997 9999999999999
Q ss_pred ecCCCc
Q psy2871 91 RAVPRD 96 (178)
Q Consensus 91 ~~~~~~ 96 (178)
++....
T Consensus 82 ~a~~~~ 87 (110)
T 3s8s_A 82 LDIKGQ 87 (110)
T ss_dssp ECSTTH
T ss_pred ECCCCc
Confidence 986543
No 26
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=3.1e-21 Score=120.74 Aligned_cols=83 Identities=40% Similarity=0.825 Sum_probs=76.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v 89 (178)
+..+.+.++|||+|||+++++++|+++|++||.|..+++..++.++.++|||||.|.+.++|.+|++.++..+.|+.|.|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 34567789999999999999999999999999999999999998899999999999999999999998888999999999
Q ss_pred eec
Q psy2871 90 KRA 92 (178)
Q Consensus 90 ~~~ 92 (178)
.++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 27
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.6e-21 Score=122.85 Aligned_cols=91 Identities=35% Similarity=0.669 Sum_probs=83.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v 89 (178)
.......++|||+|||+++++++|+++|++||.|..++++.++.++.++|||||+|.+.++|.+|++.++..+.|+.|.|
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V 83 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 83 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEE
Confidence 44566789999999999999999999999999999999999988899999999999999999999998899999999999
Q ss_pred eecCCCcccCC
Q psy2871 90 KRAVPRDEIGK 100 (178)
Q Consensus 90 ~~~~~~~~~~~ 100 (178)
.++.+......
T Consensus 84 ~~a~~~~~~~~ 94 (99)
T 2dgs_A 84 KRAEPRDSKSS 94 (99)
T ss_dssp EECCCCCCCCC
T ss_pred EECCCCcccCC
Confidence 99987765443
No 28
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.3e-21 Score=120.44 Aligned_cols=88 Identities=25% Similarity=0.460 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
......+.+.++|||+|||+++++++|+++|++||+|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 6 SGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 44555677889999999999999999999999999999999999998899999999999999999999997 99999999
Q ss_pred EEEEeecCC
Q psy2871 86 VVETKRAVP 94 (178)
Q Consensus 86 ~i~v~~~~~ 94 (178)
.|.|.++..
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999998864
No 29
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-20 Score=123.42 Aligned_cols=93 Identities=25% Similarity=0.443 Sum_probs=84.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-C------C
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R------P 79 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~------~ 79 (178)
...+......++|||+|||+++++++|+++|+.||+|..+++..++.++.++|||||+|.+.++|.+|++. + +
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 6 SGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 34455667789999999999999999999999999999999999988899999999999999999999997 7 8
Q ss_pred ceecCeEEEEeecCCCcccC
Q psy2871 80 HNIDGRVVETKRAVPRDEIG 99 (178)
Q Consensus 80 ~~~~g~~i~v~~~~~~~~~~ 99 (178)
..+.|+.|.|.++.+.....
T Consensus 86 ~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp EESSSCEEEEECCCCCCCCC
T ss_pred cEEcCEEEEEEECCCCccCC
Confidence 99999999999998776543
No 30
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=7e-21 Score=123.29 Aligned_cols=93 Identities=40% Similarity=0.822 Sum_probs=85.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEE
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i 87 (178)
.....+.+.++|||+|||+++++++|+++|++||+|..+++..++.++.++|||||+|.+.++|.+|++.++..+.|+.|
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 87 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNI 87 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEE
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence 34556778899999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEeecCCCcccCC
Q psy2871 88 ETKRAVPRDEIGK 100 (178)
Q Consensus 88 ~v~~~~~~~~~~~ 100 (178)
.|.++.++.....
T Consensus 88 ~V~~a~~~~~~~~ 100 (105)
T 2dh8_A 88 DPKPCTPRGMQPS 100 (105)
T ss_dssp BCCCSCCSSCCTT
T ss_pred EEEEccCCCCCCC
Confidence 9999987765443
No 31
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1e-20 Score=121.23 Aligned_cols=88 Identities=20% Similarity=0.460 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
....+.++|||+|||+++++++|+++|++||+|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456789999999999999999999999999999999999988899999999999999999999966 899999999999
Q ss_pred eecCCCccc
Q psy2871 90 KRAVPRDEI 98 (178)
Q Consensus 90 ~~~~~~~~~ 98 (178)
.++.+....
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 999887654
No 32
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.9e-21 Score=122.76 Aligned_cols=92 Identities=23% Similarity=0.419 Sum_probs=84.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
..........++|||+|||+++++++|+++|++||.|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 6 SGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp SCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 44555677889999999999999999999999999999999999988899999999999999999999997 89999999
Q ss_pred EEEEeecCCCccc
Q psy2871 86 VVETKRAVPRDEI 98 (178)
Q Consensus 86 ~i~v~~~~~~~~~ 98 (178)
.|.|.++.+....
T Consensus 86 ~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 86 PIRVNKASAHNKN 98 (105)
T ss_dssp BCEEEETTTTSCC
T ss_pred EEEEEECCCCCcC
Confidence 9999999876654
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=123.86 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCc--eeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CC----ceecC
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGE--IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP----HNIDG 84 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~----~~~~g 84 (178)
....-.+|||+|||+++|+++|+++|++||. +.++++++|+.+++++|||||+|.+.++|.+|++. ++ ..++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4556789999999999999999999999995 67999999999999999999999999999999997 44 36899
Q ss_pred eEEEEeecCC
Q psy2871 85 RVVETKRAVP 94 (178)
Q Consensus 85 ~~i~v~~~~~ 94 (178)
++|.|.++..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2.3e-20 Score=122.80 Aligned_cols=93 Identities=26% Similarity=0.445 Sum_probs=84.7
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
........+.++|||+|||+++++++|+++|+.||.|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp CSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 44555677889999999999999999999999999999999999988999999999999999999999986 89999999
Q ss_pred EEEEeecCCCcccC
Q psy2871 86 VVETKRAVPRDEIG 99 (178)
Q Consensus 86 ~i~v~~~~~~~~~~ 99 (178)
.|+|.++.+.....
T Consensus 86 ~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 86 QIRTNWATRKPPAP 99 (115)
T ss_dssp ECEEEESSCCCCCS
T ss_pred EEEEEEccCCCCCC
Confidence 99999998776543
No 35
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=6.7e-21 Score=119.16 Aligned_cols=82 Identities=29% Similarity=0.491 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
.+.++|||+|||+++++++|+++|++||.|.++++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4578999999999999999999999999999999999988999999999999999999999997 999999999999998
Q ss_pred CCC
Q psy2871 93 VPR 95 (178)
Q Consensus 93 ~~~ 95 (178)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 36
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=6.4e-21 Score=124.14 Aligned_cols=92 Identities=25% Similarity=0.538 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec
Q psy2871 5 YDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (178)
Q Consensus 5 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (178)
...+.+....+.++|||+|||+++++++|+++|++||+|..+.+..++.++.++|||||+|.+.++|.+|++. ++..+.
T Consensus 15 ~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 15 MANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4455566677889999999999999999999999999999999999988899999999999999999999986 999999
Q ss_pred CeEEEEeecCCCc
Q psy2871 84 GRVVETKRAVPRD 96 (178)
Q Consensus 84 g~~i~v~~~~~~~ 96 (178)
|+.|+|.++.++.
T Consensus 95 g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 95 GRPMKVGHVTERT 107 (108)
T ss_dssp SSCCEEECSCSSC
T ss_pred CEEEEEEEcccCC
Confidence 9999999987653
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=121.41 Aligned_cols=90 Identities=21% Similarity=0.374 Sum_probs=82.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
...+..+.++|||+|||+++++++|+++|++||+|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 445677789999999999999999999999999999999999988999999999999999999999996 8999999999
Q ss_pred EEeecCCCccc
Q psy2871 88 ETKRAVPRDEI 98 (178)
Q Consensus 88 ~v~~~~~~~~~ 98 (178)
.|.++.+....
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=121.88 Aligned_cols=92 Identities=26% Similarity=0.434 Sum_probs=83.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
+......+.++|||+|||+++++++|+++|++||+|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.
T Consensus 4 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 4 GSSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CSSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CcCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3444566789999999999999999999999999999999999988899999999999999999999987 999999999
Q ss_pred EEEeecCCCcccC
Q psy2871 87 VETKRAVPRDEIG 99 (178)
Q Consensus 87 i~v~~~~~~~~~~ 99 (178)
|.|.++.+.....
T Consensus 84 l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 84 IRVNLAKPMRIKE 96 (102)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999998766543
No 39
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.5e-20 Score=119.05 Aligned_cols=90 Identities=30% Similarity=0.506 Sum_probs=81.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~ 88 (178)
......+.++|||+|||+++++++|+++|+.||+|..+++..++.++.++|||||+|.+.++|.+|++. +..+.|+.|.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~ 86 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCD 86 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEE
Confidence 444566788999999999999999999999999999999999988899999999999999999999995 6789999999
Q ss_pred EeecCCCcccC
Q psy2871 89 TKRAVPRDEIG 99 (178)
Q Consensus 89 v~~~~~~~~~~ 99 (178)
|.++.++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cqg_A 87 CKLPNSKQSQD 97 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EEecCCCCcCC
Confidence 99998876543
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=2.2e-20 Score=122.86 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=82.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
......+.++|||+|||+++++++|+++|+.||.|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344556678999999999999999999999999999999999998899999999999999999999987 9999999999
Q ss_pred EEeecCCCcccC
Q psy2871 88 ETKRAVPRDEIG 99 (178)
Q Consensus 88 ~v~~~~~~~~~~ 99 (178)
+|.++.+.....
T Consensus 98 ~V~~a~~~~~~~ 109 (115)
T 2cpz_A 98 KVQLKRSKNDSK 109 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEEcCCCCcCC
Confidence 999998766543
No 41
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-20 Score=119.33 Aligned_cols=88 Identities=16% Similarity=0.379 Sum_probs=80.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
......+.++|||+|||+++++++|+++|++||+|..+++..++ ++.++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678999999999999999999999999999999999998 899999999999999999999987 9999999999
Q ss_pred EEeecCCCcc
Q psy2871 88 ETKRAVPRDE 97 (178)
Q Consensus 88 ~v~~~~~~~~ 97 (178)
+|.++.+...
T Consensus 89 ~v~~a~~~~~ 98 (100)
T 2do4_A 89 KVAISNSGPS 98 (100)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 42
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=9.7e-21 Score=117.91 Aligned_cols=82 Identities=28% Similarity=0.488 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.+.+.++|||+|||+++++++|+++|++||+|.++++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345789999999999999999999999999999999999988999999999999999999999977 9999999999999
Q ss_pred ecC
Q psy2871 91 RAV 93 (178)
Q Consensus 91 ~~~ 93 (178)
++.
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 863
No 43
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=1.6e-20 Score=122.45 Aligned_cols=87 Identities=43% Similarity=0.802 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEe
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~ 90 (178)
..+.+.++|||+|||+++++++|+++|+.||.|.++++..++.++.++|||||+|.+.++|.+|++..+..+.|+.|.|.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 35566889999999999999999999999999999999999888999999999999999999999998899999999999
Q ss_pred ecCCCcc
Q psy2871 91 RAVPRDE 97 (178)
Q Consensus 91 ~~~~~~~ 97 (178)
++.+...
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 44
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=121.41 Aligned_cols=90 Identities=36% Similarity=0.643 Sum_probs=82.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
......+.++|||+|||+++++++|+++|++||+|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 345566789999999999999999999999999999999999988899999999999999999999977 8999999999
Q ss_pred EEeecCCCccc
Q psy2871 88 ETKRAVPRDEI 98 (178)
Q Consensus 88 ~v~~~~~~~~~ 98 (178)
+|.++.+....
T Consensus 85 ~v~~a~~~~~~ 95 (102)
T 1x5s_A 85 RVDQAGKSSDN 95 (102)
T ss_dssp EEEEEECCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876654
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=3.6e-20 Score=119.50 Aligned_cols=91 Identities=20% Similarity=0.368 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeE
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (178)
..........++|||+|||+++++++|+++|+.|| |.+++++.++.++.++|||||+|.+.++|.+|++.++..+.|+.
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 84 (103)
T 2dng_A 6 SGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS 84 (103)
T ss_dssp CCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE
Confidence 34455567789999999999999999999999997 99999999998899999999999999999999966999999999
Q ss_pred EEEeecCCCccc
Q psy2871 87 VETKRAVPRDEI 98 (178)
Q Consensus 87 i~v~~~~~~~~~ 98 (178)
|.|.++.+....
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2dng_A 85 LRVDIAEGRKQD 96 (103)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEecCCCCC
Confidence 999999876543
No 46
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=121.83 Aligned_cols=90 Identities=27% Similarity=0.494 Sum_probs=82.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
.+....+.++|||+|||+++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 344667789999999999999999999999999999999999988899999999999999999999996 9999999999
Q ss_pred EEeecCCCccc
Q psy2871 88 ETKRAVPRDEI 98 (178)
Q Consensus 88 ~v~~~~~~~~~ 98 (178)
.|.++.+....
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 99999876543
No 47
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.1e-20 Score=118.41 Aligned_cols=91 Identities=15% Similarity=0.283 Sum_probs=80.7
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
..........++|||+|||+++++++|+++|++||+|..+++..++.+ ++|||||+|.+.++|.+|++. ++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 6 SGMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp CCCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 344556777899999999999999999999999999999999998533 689999999999999999996 99999999
Q ss_pred EEEEeecCCCcccC
Q psy2871 86 VVETKRAVPRDEIG 99 (178)
Q Consensus 86 ~i~v~~~~~~~~~~ 99 (178)
.|+|.++.+.....
T Consensus 84 ~l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 84 EVKVNWATTPSSQK 97 (103)
T ss_dssp EEEEEECCCTTCCC
T ss_pred eEEEEECCCCcccc
Confidence 99999998765543
No 48
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.2e-21 Score=123.08 Aligned_cols=82 Identities=12% Similarity=0.197 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 91 (178)
.....++|||+|||+++|+++|+++|++||+|.++++..++. +.++|||||+|.+.++|..|+..++..+.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 455678999999999999999999999999999999999986 9999999999999999999999889999999999998
Q ss_pred cCC
Q psy2871 92 AVP 94 (178)
Q Consensus 92 ~~~ 94 (178)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 765
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.5e-20 Score=116.52 Aligned_cols=81 Identities=26% Similarity=0.493 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCC
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~ 94 (178)
+.+|||+|||+++++++|+++|++||+|.++++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 35899999999999999999999999999999999988999999999999999999999997 99999999999999976
Q ss_pred Cc
Q psy2871 95 RD 96 (178)
Q Consensus 95 ~~ 96 (178)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 50
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=118.01 Aligned_cols=86 Identities=24% Similarity=0.470 Sum_probs=79.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
.....+.+.++|||+|||+++++++|+++|++||+|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3445566789999999999999999999999999999999999988899999999999999999999976 899999999
Q ss_pred EEEeecC
Q psy2871 87 VETKRAV 93 (178)
Q Consensus 87 i~v~~~~ 93 (178)
|+|.++.
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999863
No 51
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=119.38 Aligned_cols=86 Identities=27% Similarity=0.479 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEE-EEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDV-VVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
.+.++|||+|||+++++++|+++|++||.|..+ ++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999996 89999999999999
Q ss_pred cCCCcccC
Q psy2871 92 AVPRDEIG 99 (178)
Q Consensus 92 ~~~~~~~~ 99 (178)
+.+.....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98776543
No 52
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=118.41 Aligned_cols=86 Identities=29% Similarity=0.585 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
+.+.++|||+|||+++++++|+++|++||+|.++++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34678999999999999999999999999999999999988899999999999999999999996 99999999999999
Q ss_pred cCCCccc
Q psy2871 92 AVPRDEI 98 (178)
Q Consensus 92 ~~~~~~~ 98 (178)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876654
No 53
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.84 E-value=8.7e-21 Score=124.79 Aligned_cols=103 Identities=20% Similarity=0.395 Sum_probs=91.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
+...++|||+|||+++++++|+++|+.||.|.++++..+ +.++|||||.|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999864 45689999999999999999996 99999999999999
Q ss_pred cCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCc
Q psy2871 92 AVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGT 132 (178)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~ 132 (178)
+.+.... .+++. .++++|..+|++||-
T Consensus 82 a~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--------------hhhhHhHhHHHHHHHHHHhCC
Confidence 9765543 45677 889999999999984
No 54
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=120.66 Aligned_cols=92 Identities=10% Similarity=0.170 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-C--
Q psy2871 2 KPRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R-- 78 (178)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~-- 78 (178)
+.+.-...-+.+.+.++|||+|||+++|+++|+++|++||.|.+++++++ +|||||+|.+.++|..|++. +
T Consensus 2 ~~~~~~~~~~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~ 75 (105)
T 1sjq_A 2 RGSHHHHHHGSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSV 75 (105)
T ss_dssp ----------CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CccccccccCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccC
Confidence 33333444566778999999999999999999999999999999999875 59999999999999999995 3
Q ss_pred CceecCeEEEEeecCCCcccC
Q psy2871 79 PHNIDGRVVETKRAVPRDEIG 99 (178)
Q Consensus 79 ~~~~~g~~i~v~~~~~~~~~~ 99 (178)
+..+.|++|+|.++.++....
T Consensus 76 ~~~l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 76 TPVLRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp CCEETTEECCBCCCSSSSCCC
T ss_pred CceECCEEEEEEEcCCCCCCc
Confidence 578999999999998766543
No 55
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.4e-20 Score=120.38 Aligned_cols=93 Identities=17% Similarity=0.384 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeC-CCCCCccceEEEEeCCHHHHHHHHhc--CCceec
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKD-PITKRSRGFGFITYSEAKMVDDAMSN--RPHNID 83 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~a~~~--~~~~~~ 83 (178)
..........++|||+|||+.+++++|+++|++||+|..+++..+ +.++.++|||||+|.+.++|.+|++. ++..+.
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 6 SGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 445556778899999999999999999999999999999999998 77899999999999999999999987 689999
Q ss_pred CeEEEEeecCCCcccC
Q psy2871 84 GRVVETKRAVPRDEIG 99 (178)
Q Consensus 84 g~~i~v~~~~~~~~~~ 99 (178)
|+.|.|.++.+.....
T Consensus 86 g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 86 GRRLVLEWADSEVTVQ 101 (107)
T ss_dssp SCBCEEEECCCCCCCC
T ss_pred CCEEEEEeCCCCCCCC
Confidence 9999999998776543
No 56
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=2.5e-20 Score=118.75 Aligned_cols=83 Identities=24% Similarity=0.480 Sum_probs=78.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
++++|||+|||+++++++|+++|++||.|.++++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 368999999999999999999999999999999999988899999999999999999999987 9999999999999998
Q ss_pred CCcc
Q psy2871 94 PRDE 97 (178)
Q Consensus 94 ~~~~ 97 (178)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 57
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=1.7e-20 Score=128.99 Aligned_cols=118 Identities=23% Similarity=0.289 Sum_probs=99.7
Q ss_pred CCCccceEEEEeCCHHHHHHHHhc--CCceecCeEEEEeecCCCcc----------cCCCCCCCcccEEEEeCCCc-ccH
Q psy2871 54 TKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGRVVETKRAVPRDE----------IGKPEANATVKKMFVGGLKD-QEE 120 (178)
Q Consensus 54 ~~~~~g~afV~f~~~~~a~~a~~~--~~~~~~g~~i~v~~~~~~~~----------~~~~~~~~~~~~l~v~~l~~-~t~ 120 (178)
+...+|+++|+|.+.++|++|++. ++..++| .+.+.++..... ..........++|||+|||. +++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 456889999999999999999976 6788899 999998765321 12233345678999999999 999
Q ss_pred HHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 121 DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 121 ~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
++|+++|++||.|..+.++.+ ++|||||+|.+.++|..|+.. ++..+.|++|
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 999999999999999999875 578999999999999999996 7888888876
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.9e-20 Score=119.90 Aligned_cols=90 Identities=34% Similarity=0.615 Sum_probs=80.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEE
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i 87 (178)
.....+...++|||+|||+++++++|+++|++||.|..+++..++.++.++|||||+|.+.++|++|++..+..+.|+.|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 34456677899999999999999999999999999999999999888999999999999999999999993338999999
Q ss_pred EEeecCCCcc
Q psy2871 88 ETKRAVPRDE 97 (178)
Q Consensus 88 ~v~~~~~~~~ 97 (178)
.|.++.....
T Consensus 89 ~V~~a~~~~~ 98 (116)
T 2cqd_A 89 NVNLAYLGAK 98 (116)
T ss_dssp EEEESTTTCC
T ss_pred EEEEcccCCC
Confidence 9999976543
No 59
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-19 Score=117.17 Aligned_cols=92 Identities=24% Similarity=0.492 Sum_probs=81.7
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
..........++|||+|||+++++++|+++|+.||.|..+++..+.. .++|||||.|.+.++|.+|++. ++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 44455667789999999999999999999999999999999998863 3899999999999999999997 99999999
Q ss_pred EEEEeecCCCcccCC
Q psy2871 86 VVETKRAVPRDEIGK 100 (178)
Q Consensus 86 ~i~v~~~~~~~~~~~ 100 (178)
.|.|.++.+......
T Consensus 84 ~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 84 KIEVNNATARVMTNS 98 (103)
T ss_dssp ECEEEECCSSCCCCC
T ss_pred EEEEEEcccCCCCCC
Confidence 999999988765443
No 60
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.6e-20 Score=119.50 Aligned_cols=92 Identities=22% Similarity=0.370 Sum_probs=82.7
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
........+.++|||+|||+++++++|+++|++||.|..+++..+ ++.++|||||+|.+.++|.+|++. ++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 6 SGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 344556678999999999999999999999999999999999998 788999999999999999999997 99999999
Q ss_pred EEEEeecCCCcccCC
Q psy2871 86 VVETKRAVPRDEIGK 100 (178)
Q Consensus 86 ~i~v~~~~~~~~~~~ 100 (178)
.|.|.++.+......
T Consensus 84 ~l~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 84 PLYVALAQRKEERQS 98 (103)
T ss_dssp BCEEEECSSCCCCCC
T ss_pred EEEEEEecccccCCC
Confidence 999999988765433
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=121.65 Aligned_cols=86 Identities=20% Similarity=0.353 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
....+.++|||+|||+++++++|+++|+.||+|.++++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3445678899999999999999999999999999999999998899999999999999999999997 999999999999
Q ss_pred eecCCCc
Q psy2871 90 KRAVPRD 96 (178)
Q Consensus 90 ~~~~~~~ 96 (178)
.++.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987653
No 62
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.1e-20 Score=118.64 Aligned_cols=90 Identities=21% Similarity=0.410 Sum_probs=80.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCC-CCccceEEEEeCCHHHHHHHHhcCCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT-KRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i 87 (178)
........++|||+|||+++++++|+++|+.|| |..++++.++.+ +.++|||||+|.+.++|.+|+..++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 86 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRI 86 (104)
T ss_dssp CCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEE
Confidence 344456679999999999999999999999999 999999999877 899999999999999999999559999999999
Q ss_pred EEeecCCCcccC
Q psy2871 88 ETKRAVPRDEIG 99 (178)
Q Consensus 88 ~v~~~~~~~~~~ 99 (178)
.|.++.+.....
T Consensus 87 ~V~~a~~~~~~~ 98 (104)
T 1wi8_A 87 RVDVADQAQDKD 98 (104)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999998776543
No 63
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=3.4e-20 Score=116.40 Aligned_cols=82 Identities=23% Similarity=0.498 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecC
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 93 (178)
.+.++|||+|||+++++++|+++|++||.|.++++..++.++.++|||||+|.+.++|.+|+..++..+.|+.|+|.++.
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 35689999999999999999999999999999999999889999999999999999999999559999999999999987
Q ss_pred CC
Q psy2871 94 PR 95 (178)
Q Consensus 94 ~~ 95 (178)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 64
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=123.59 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=81.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCce-eEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEI-VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 85 (178)
......+.+.++|||+|||+++++++|+++|+.||.| ..++++.++ +++++|||||+|.+.++|.+|++.++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 6 SGEGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp CCCCSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred CCCCCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 3344456778999999999999999999999999999 899999998 89999999999999999999999999999999
Q ss_pred EEEEeecCCCc
Q psy2871 86 VVETKRAVPRD 96 (178)
Q Consensus 86 ~i~v~~~~~~~ 96 (178)
.|.|.++.+..
T Consensus 85 ~i~v~~a~~~~ 95 (114)
T 2cpy_A 85 EAFVHVVTLED 95 (114)
T ss_dssp EEEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999987655
No 65
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=118.54 Aligned_cols=86 Identities=26% Similarity=0.476 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCC---CCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPI---TKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
.+.++|||+|||+++++++|+++|++||+|..+++..++. ++.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5678999999999999999999999999999999998876 558999999999999999999997 899999999999
Q ss_pred eecCCCcccC
Q psy2871 90 KRAVPRDEIG 99 (178)
Q Consensus 90 ~~~~~~~~~~ 99 (178)
.++.+.....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998765543
No 66
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=118.55 Aligned_cols=86 Identities=14% Similarity=0.323 Sum_probs=79.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCcee-EEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE--
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV-DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV-- 86 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~-- 86 (178)
......++|||+|||+++++++|+++|++||+|. ++++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4556789999999999999999999999999999 999999998999999999999999999999997 899999998
Q ss_pred --EEEeecCCCc
Q psy2871 87 --VETKRAVPRD 96 (178)
Q Consensus 87 --i~v~~~~~~~ 96 (178)
|+|.++.+..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999987654
No 67
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.5e-20 Score=120.13 Aligned_cols=90 Identities=26% Similarity=0.411 Sum_probs=81.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCcee---cC
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI---DG 84 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~---~g 84 (178)
....+.+.++|||+|||+++++++|+++|++||+|.+++++.++.++.++|||||+|.+.++|.+|++. ++..+ .|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 444566789999999999999999999999999999999999998899999999999999999999997 77776 88
Q ss_pred eEEEEeecCCCccc
Q psy2871 85 RVVETKRAVPRDEI 98 (178)
Q Consensus 85 ~~i~v~~~~~~~~~ 98 (178)
+.|.|.++.+....
T Consensus 86 ~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 86 RPIQVKPADSESRG 99 (106)
T ss_dssp SCCEEEECCCCSCC
T ss_pred ceEEEEECCccccc
Confidence 99999999876653
No 68
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=121.98 Aligned_cols=88 Identities=63% Similarity=1.101 Sum_probs=81.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 91 (178)
.....++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|.+|++.++..+.|+.|.|.+
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 34456899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cCCCcccC
Q psy2871 92 AVPRDEIG 99 (178)
Q Consensus 92 ~~~~~~~~ 99 (178)
+.++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 98876543
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=119.35 Aligned_cols=89 Identities=21% Similarity=0.352 Sum_probs=81.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCce-ecCeEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQ-WGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHN-IDGRVV 87 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~-~~g~~i 87 (178)
.+....++|||+|||+++++++|+++|++ ||.|.++++..+. ++.++|||||+|.+.++|.+|++. ++.. +.|+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 45567889999999999999999999999 9999999999999 899999999999999999999996 8888 999999
Q ss_pred EEeecCCCcccCC
Q psy2871 88 ETKRAVPRDEIGK 100 (178)
Q Consensus 88 ~v~~~~~~~~~~~ 100 (178)
.|.++.+......
T Consensus 83 ~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 83 RLSVAIPKASRVK 95 (104)
T ss_dssp CCCBCCCCCSCCC
T ss_pred EEEEccCCCcCCC
Confidence 9999977665443
No 70
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=7.6e-20 Score=118.33 Aligned_cols=86 Identities=22% Similarity=0.366 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecC---eEE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG---RVV 87 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g---~~i 87 (178)
.....++|||+|||+++++++|+++|+.||.|..+++..++ ++.++|||||+|.+.++|.+|++. ++..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44568999999999999999999999999999999999998 789999999999999999999997 8888888 999
Q ss_pred EEeecCCCccc
Q psy2871 88 ETKRAVPRDEI 98 (178)
Q Consensus 88 ~v~~~~~~~~~ 98 (178)
.|.++.+....
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876654
No 71
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=117.39 Aligned_cols=85 Identities=26% Similarity=0.429 Sum_probs=76.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
.+..+...++|||+|||+++++++|+++|++||+|.++++..++. +.++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 344667789999999999999999999999999999999999984 88999999999999999999996 9999999999
Q ss_pred EEeecCC
Q psy2871 88 ETKRAVP 94 (178)
Q Consensus 88 ~v~~~~~ 94 (178)
.|.++..
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9998753
No 72
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.4e-20 Score=120.25 Aligned_cols=90 Identities=18% Similarity=0.302 Sum_probs=82.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCcee--------EEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCc
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--------DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH 80 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~ 80 (178)
.......++|||+|||+++++++|+++|++||.|. .+++..++.++.++|||||+|.+.++|.+|++. ++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 44667789999999999999999999999999999 699999988999999999999999999999997 999
Q ss_pred eecCeEEEEeecCCCcccC
Q psy2871 81 NIDGRVVETKRAVPRDEIG 99 (178)
Q Consensus 81 ~~~g~~i~v~~~~~~~~~~ 99 (178)
.+.|+.|+|.++.+.....
T Consensus 89 ~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp EETTEECEEECSSCCCCST
T ss_pred ccCCCEEEEEECCCCCCCC
Confidence 9999999999998776543
No 73
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=3.7e-20 Score=120.85 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=80.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
.+....+.++|||+|||+++++++|+++|+.||.|..+++..++.++.++|||||+|.+.++|..|++. ++..+.|+.|
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 334455678999999999999999999999999999999999988999999999999999999999996 9999999999
Q ss_pred EEeecCCCc
Q psy2871 88 ETKRAVPRD 96 (178)
Q Consensus 88 ~v~~~~~~~ 96 (178)
.|.++.+..
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999987654
No 74
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=2.9e-20 Score=124.69 Aligned_cols=88 Identities=25% Similarity=0.476 Sum_probs=81.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
....+.+.++|||+|||+++++++|+++|++||+|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 445667789999999999999999999999999999999999988899999999999999999999997 9999999999
Q ss_pred EEeecCCCc
Q psy2871 88 ETKRAVPRD 96 (178)
Q Consensus 88 ~v~~~~~~~ 96 (178)
.|.++.++.
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999987654
No 75
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=118.16 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=79.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeE--------EEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-C
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD--------VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R 78 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~ 78 (178)
.....+...++|||+|||+++++++|+++|++||.|.. +++..++.+++++|||||+|.+.++|.+|++. +
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34456667899999999999999999999999999999 99999988999999999999999999999986 9
Q ss_pred CceecCeEEEEeecC
Q psy2871 79 PHNIDGRVVETKRAV 93 (178)
Q Consensus 79 ~~~~~g~~i~v~~~~ 93 (178)
+..+.|+.|+|.++.
T Consensus 85 g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGNPIKVSFAT 99 (99)
T ss_dssp TCBSSSSBCEEEECC
T ss_pred CCEeCCcEEEEEecC
Confidence 999999999999863
No 76
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8e-20 Score=118.13 Aligned_cols=88 Identities=17% Similarity=0.329 Sum_probs=79.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeE-EEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD-VVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i 87 (178)
........++|||+|||+++++++|+++|++||.|.. +.+..+ .+++++|||||+|.+.++|.+|++.++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i 86 (104)
T 1wg5_A 8 NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 86 (104)
T ss_dssp CCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEE
Confidence 3445567889999999999999999999999999987 888888 58999999999999999999999999999999999
Q ss_pred EEeecCCCcc
Q psy2871 88 ETKRAVPRDE 97 (178)
Q Consensus 88 ~v~~~~~~~~ 97 (178)
.|.++.....
T Consensus 87 ~v~~~~~~~~ 96 (104)
T 1wg5_A 87 EIFKSSRAEV 96 (104)
T ss_dssp EEEEECTTTS
T ss_pred EEEECCHHHH
Confidence 9998876554
No 77
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=7.4e-20 Score=120.56 Aligned_cols=86 Identities=31% Similarity=0.579 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
+..+.++|||+|||+++++++|+++|++||.|.++.+..+. ++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45668899999999999999999999999999999999998 899999999999999999999987 8999999999999
Q ss_pred ecCCCccc
Q psy2871 91 RAVPRDEI 98 (178)
Q Consensus 91 ~~~~~~~~ 98 (178)
++.+....
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99876543
No 78
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=6e-20 Score=121.30 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=77.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
.....+.++|||+|||+++++++|+++|++||.|.++++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556678999999999999999999999999999999999988899999999999999999999997 89999999999
Q ss_pred Eeec
Q psy2871 89 TKRA 92 (178)
Q Consensus 89 v~~~ 92 (178)
|.++
T Consensus 114 V~~a 117 (118)
T 2khc_A 114 VQLK 117 (118)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
No 79
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=1.6e-20 Score=114.26 Aligned_cols=75 Identities=40% Similarity=0.760 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeec
Q psy2871 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (178)
Q Consensus 18 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 92 (178)
+|||+|||+++++++|+++|++||+|.++++..++.++.++|||||+|.+.++|++|++.++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999988899999999999999999999998999999999999875
No 80
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=9.2e-21 Score=121.73 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCC------CCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecC-
Q psy2871 13 PESLRKVFIGGLDY------RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG- 84 (178)
Q Consensus 13 ~~~~~~l~v~nlp~------~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g- 84 (178)
....++|||+|||. ++++++|+++|++||+|.+++++.++.+++++|||||.|.+.++|.+|++. ++..+.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 999999999999999999999999998899999999999999999999987 9999999
Q ss_pred eEEEEeecCCCc
Q psy2871 85 RVVETKRAVPRD 96 (178)
Q Consensus 85 ~~i~v~~~~~~~ 96 (178)
+.|+|.++.+..
T Consensus 83 r~l~V~~a~~~~ 94 (100)
T 3ns6_A 83 HRLFLYTMKDVE 94 (100)
T ss_dssp CBCEEEESHHHH
T ss_pred eEEEEEECchhh
Confidence 999999987643
No 81
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=122.01 Aligned_cols=90 Identities=23% Similarity=0.447 Sum_probs=82.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
...+...++|||+|||+++++++|+++|+.||.|.++++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34566789999999999999999999999999999999999998899999999999999999999997 89999999999
Q ss_pred EeecCCCcccC
Q psy2871 89 TKRAVPRDEIG 99 (178)
Q Consensus 89 v~~~~~~~~~~ 99 (178)
|.++.+.....
T Consensus 116 v~~a~~~~~~~ 126 (139)
T 1u6f_A 116 VALAASGHQRP 126 (139)
T ss_dssp EEESSCCCCCC
T ss_pred EEECCCCCCCC
Confidence 99998776543
No 82
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=8.5e-21 Score=119.58 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=70.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
.+|||+|||+++++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|.+|++. ++..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999999998999999999999999999999976 8999999999999987
Q ss_pred CCcc
Q psy2871 94 PRDE 97 (178)
Q Consensus 94 ~~~~ 97 (178)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 83
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=120.15 Aligned_cols=95 Identities=20% Similarity=0.388 Sum_probs=81.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCC
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~ 95 (178)
.+|||+|||+++++++|+++|++||+|.++++..+ ++|||||+|.+.++|.+|++. ++..+.|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 679999999999999999997 888999999999999887
Q ss_pred cccCCCCC----CCcccEEEEeCCC
Q psy2871 96 DEIGKPEA----NATVKKMFVGGLK 116 (178)
Q Consensus 96 ~~~~~~~~----~~~~~~l~v~~l~ 116 (178)
........ .....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 64433222 1236789999986
No 84
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=116.61 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-C--Cce
Q psy2871 6 DDSKCTEPESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHN 81 (178)
Q Consensus 6 ~~~~~~~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~--~~~ 81 (178)
.+++.....++++|||+|||+ ++++++|+++|++||.|.++++++++ |||||+|.+.++|..|++. + +..
T Consensus 5 ~~~~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~ 78 (102)
T 1x4d_A 5 SSGQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPAL 78 (102)
T ss_dssp CCCCCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCce
Confidence 344555666789999999999 99999999999999999999998653 8999999999999999996 3 467
Q ss_pred ecCeEEEEeecCCCccc
Q psy2871 82 IDGRVVETKRAVPRDEI 98 (178)
Q Consensus 82 ~~g~~i~v~~~~~~~~~ 98 (178)
+.|++|.|.++......
T Consensus 79 ~~Gr~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 79 VFGKPVRVHLSQKYKRI 95 (102)
T ss_dssp ETTEECEEEEECCCTTS
T ss_pred ECCcEEEEEECCCCCCC
Confidence 99999999999865443
No 85
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=113.10 Aligned_cols=85 Identities=16% Similarity=0.341 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v 89 (178)
...+...++|||+|||+++++++|+++|+.| .|.+++++.+ .+++++|||||+|.+.++|.+|++.++..+.|+.|.|
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v 81 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEE
Confidence 3456678999999999999999999999999 9999999999 5889999999999999999999999899999999999
Q ss_pred eecCCCc
Q psy2871 90 KRAVPRD 96 (178)
Q Consensus 90 ~~~~~~~ 96 (178)
.++.+..
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9987764
No 86
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=7.1e-20 Score=126.61 Aligned_cols=81 Identities=17% Similarity=0.373 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
..++|||+|||+++++++|+++|+.|| .|.+++++.++.+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999 89999999999999
Q ss_pred cCCC
Q psy2871 92 AVPR 95 (178)
Q Consensus 92 ~~~~ 95 (178)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8654
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-20 Score=120.66 Aligned_cols=86 Identities=29% Similarity=0.564 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.+.+.++|||+|||+++++++|+++|+.||.|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 455678999999999999999999999999999999999988899999999999999999999986 8999999999999
Q ss_pred ecCCCcc
Q psy2871 91 RAVPRDE 97 (178)
Q Consensus 91 ~~~~~~~ 97 (178)
++.+...
T Consensus 84 ~a~~~~~ 90 (104)
T 1p1t_A 84 NAASEKN 90 (104)
T ss_dssp ETTCTTH
T ss_pred eCCCccc
Confidence 9987654
No 88
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=9e-20 Score=114.18 Aligned_cols=82 Identities=18% Similarity=0.392 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCC-ccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKR-SRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~-~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
..++|||+|||+++++++|+++|++||+|.++.+..+..++. ++|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999886655 899999999999999999997 999999999999998
Q ss_pred CCCc
Q psy2871 93 VPRD 96 (178)
Q Consensus 93 ~~~~ 96 (178)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 89
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-19 Score=114.29 Aligned_cols=85 Identities=9% Similarity=0.159 Sum_probs=75.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc---CCceecCe
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGR 85 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~ 85 (178)
......++++|||+|||+++++++|+++|++||.|.++.+..+ +|||||+|.+.++|..|++. ++..+.|+
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 8 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp CCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 3445567899999999999999999999999999999998864 69999999999999999985 56789999
Q ss_pred EEEEeecCCCcccC
Q psy2871 86 VVETKRAVPRDEIG 99 (178)
Q Consensus 86 ~i~v~~~~~~~~~~ 99 (178)
+|.|.++.......
T Consensus 82 ~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 82 PIYIQYSNHKELKT 95 (101)
T ss_dssp ECEEEECSCSSCCC
T ss_pred EEEEEEcCcccCcC
Confidence 99999998766554
No 90
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.2e-20 Score=119.71 Aligned_cols=84 Identities=23% Similarity=0.380 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeec
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 92 (178)
....++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|.+|+..++..+.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 34568999999999999999999999999999999999998899999999999999999999955999999999999998
Q ss_pred CCCc
Q psy2871 93 VPRD 96 (178)
Q Consensus 93 ~~~~ 96 (178)
.+..
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 6654
No 91
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.1e-20 Score=117.95 Aligned_cols=87 Identities=21% Similarity=0.281 Sum_probs=78.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~ 88 (178)
....+...++|||+|||+++|+++|+++|++||.+ .++++.++ +++++|||||+|.+.++|++|++.++..+.|+.|.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (102)
T 1wez_A 8 SSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE 85 (102)
T ss_dssp SSCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEE
Confidence 34456678899999999999999999999999955 99999998 89999999999999999999998899999999999
Q ss_pred EeecCCCcc
Q psy2871 89 TKRAVPRDE 97 (178)
Q Consensus 89 v~~~~~~~~ 97 (178)
|.++.+...
T Consensus 86 V~~~~~~~~ 94 (102)
T 1wez_A 86 LFLNSTAGT 94 (102)
T ss_dssp EEEECCCCC
T ss_pred EEECCCCCC
Confidence 998876543
No 92
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6.8e-19 Score=115.46 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=79.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
.......++|||+|||+++++++|+++|+.||.|.++++..++ ++.++|||||+|.+.++|.+|++. ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3455668899999999999999999999999999999999998 689999999999999999999996 99999999999
Q ss_pred EeecCCCcc
Q psy2871 89 TKRAVPRDE 97 (178)
Q Consensus 89 v~~~~~~~~ 97 (178)
|.++.....
T Consensus 88 v~~a~~~~~ 96 (114)
T 2do0_A 88 VKMDERALP 96 (114)
T ss_dssp EEECSCCCC
T ss_pred EEEcccCCC
Confidence 999875443
No 93
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=2.5e-20 Score=113.36 Aligned_cols=75 Identities=35% Similarity=0.604 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeec
Q psy2871 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (178)
Q Consensus 18 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 92 (178)
+|||+|||+++++++|+++|++||+|.++++..++.++.++|||||+|.+.++|.+|++.++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999999889999999998864
No 94
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=2e-19 Score=116.74 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=77.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
.......++|||+|||+.+++++|+++|++||.|..+.+..++ ++.++|||||+|.+.++|.+|++. ++..+.|+.|.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455678899999999999999999999999999999999999 899999999999999999999997 99999999999
Q ss_pred EeecC
Q psy2871 89 TKRAV 93 (178)
Q Consensus 89 v~~~~ 93 (178)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 95
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.3e-19 Score=114.48 Aligned_cols=89 Identities=13% Similarity=0.289 Sum_probs=78.2
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
..........++|||+|||+++++++|+++|++||.|..+++.. ++.++|||||+|.+.++|.+|++. ++..+.|+
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 34455667789999999999999999999999999999999965 446889999999999999999977 89999999
Q ss_pred EEEEeecCCCccc
Q psy2871 86 VVETKRAVPRDEI 98 (178)
Q Consensus 86 ~i~v~~~~~~~~~ 98 (178)
.|.|.++.+....
T Consensus 90 ~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 90 RLRVEFPRSGRGT 102 (109)
T ss_dssp ECEEECCCCCCCC
T ss_pred EEEEEEcccCCCC
Confidence 9999999876543
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=119.36 Aligned_cols=88 Identities=23% Similarity=0.418 Sum_probs=74.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCC-CCCCccceEEEEeCCHHHHHHHHhcCCceecCeE
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDP-ITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (178)
.........++|||+|||+++++++|+++|+.|| |.++++..++ .+++++|||||+|.+.++|.+|+..++..+.|+.
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 3445667789999999999999999999999999 9999999988 5899999999999999999999966999999999
Q ss_pred EEEeecCCCc
Q psy2871 87 VETKRAVPRD 96 (178)
Q Consensus 87 i~v~~~~~~~ 96 (178)
|+|.++.+..
T Consensus 90 l~V~~a~~~~ 99 (100)
T 2j76_E 90 IRVDVADQAQ 99 (100)
T ss_dssp CCCEECCCSC
T ss_pred EEEEeccCCC
Confidence 9999987653
No 97
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.3e-20 Score=116.97 Aligned_cols=87 Identities=11% Similarity=0.150 Sum_probs=78.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
........++|||+|||+++++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++|++. ++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 8 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 344556678999999999999999999999999999888888888899999999999999999999976 8899999999
Q ss_pred EEeecCCC
Q psy2871 88 ETKRAVPR 95 (178)
Q Consensus 88 ~v~~~~~~ 95 (178)
+|.++...
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99998653
No 98
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=1.1e-19 Score=121.35 Aligned_cols=92 Identities=18% Similarity=0.315 Sum_probs=82.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
...+....+.++|||+|||+++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++. ++..+.|+
T Consensus 13 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 13 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp -CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 33445566688999999999999999999999999999999999988999999999999999999999986 99999999
Q ss_pred EEEEeecCCCccc
Q psy2871 86 VVETKRAVPRDEI 98 (178)
Q Consensus 86 ~i~v~~~~~~~~~ 98 (178)
.|.|.++.+....
T Consensus 93 ~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 93 PISVDWCFVRGPP 105 (126)
T ss_dssp BCEEEESEESSSC
T ss_pred EEEEEEecCCCCC
Confidence 9999999766543
No 99
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=3.5e-19 Score=123.36 Aligned_cols=88 Identities=30% Similarity=0.530 Sum_probs=80.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
......++|||+|||+++++++|+++|+.||.|..+++..++.++.++|||||.|.+.++|..|++. ++..+.|+.|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999986 899999999999
Q ss_pred eecCCCccc
Q psy2871 90 KRAVPRDEI 98 (178)
Q Consensus 90 ~~~~~~~~~ 98 (178)
.++.+....
T Consensus 145 ~~a~~~~~~ 153 (158)
T 2kn4_A 145 QMARYGRPP 153 (158)
T ss_dssp EEECCSSCC
T ss_pred EECCCCCCC
Confidence 999876543
No 100
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.1e-19 Score=113.12 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
...+.++|||+|||+++++++|+ ++|++||+|.++++..++.+ +|||||+|.+.++|.+|++. ++..+.|+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34556899999999999999999 99999999999999988744 79999999999999999997 999999999
Q ss_pred EEEeecCCCcc
Q psy2871 87 VETKRAVPRDE 97 (178)
Q Consensus 87 i~v~~~~~~~~ 97 (178)
|+|.++.+...
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999976543
No 101
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=5.6e-20 Score=123.68 Aligned_cols=89 Identities=21% Similarity=0.327 Sum_probs=80.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeE--EEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCc----
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD--VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH---- 80 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~---- 80 (178)
+.+......++|||+|||+++|+++|+++|++||.|.. ++++.++.+++++|||||+|.+. +|.+|++. ++.
T Consensus 15 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 15 SEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 34445567889999999999999999999999999976 99999999999999999999999 99999998 888
Q ss_pred eecCeEEEEeecCCCcc
Q psy2871 81 NIDGRVVETKRAVPRDE 97 (178)
Q Consensus 81 ~~~g~~i~v~~~~~~~~ 97 (178)
.+.|+.|.|.++.+...
T Consensus 94 ~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CGGGCCCCCEECCCSCC
T ss_pred cCCCEEEEEEECCCCCC
Confidence 99999999999987644
No 102
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=2.4e-19 Score=113.25 Aligned_cols=84 Identities=14% Similarity=0.317 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
...+.++|||+|||+++++++|+++|++||+|..+++..+ ++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4566889999999999999999999999999999999984 778999999999999999999997 8999999999999
Q ss_pred ecCCCcc
Q psy2871 91 RAVPRDE 97 (178)
Q Consensus 91 ~~~~~~~ 97 (178)
++.+...
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9877654
No 103
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.6e-20 Score=112.69 Aligned_cols=76 Identities=45% Similarity=0.890 Sum_probs=72.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeec
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~ 92 (178)
++|||+|||+++++++|+++|++||+|.++.+..++.++.++|||||+|.+.++|.+|++..+..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999988899999999999999999999999559999999999876
No 104
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=121.12 Aligned_cols=84 Identities=27% Similarity=0.480 Sum_probs=77.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
......+.++|||+|||+++++++|+++|++||+|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344566789999999999999999999999999999999999988899999999999999999999986 8999999999
Q ss_pred EEeec
Q psy2871 88 ETKRA 92 (178)
Q Consensus 88 ~v~~~ 92 (178)
+|.++
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 105
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=4.5e-19 Score=112.98 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=69.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CC--ceecCeEEE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP--HNIDGRVVE 88 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~--~~~~g~~i~ 88 (178)
...++++|||+|||+++|+++|+++|++||.|.++.+++ .+|||||+|.+.++|..|++. ++ ..+.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 445688999999999999999999999999999999985 359999999999999999997 43 458899999
Q ss_pred EeecCCCc
Q psy2871 89 TKRAVPRD 96 (178)
Q Consensus 89 v~~~~~~~ 96 (178)
|.++..+.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99997654
No 106
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.81 E-value=8.9e-20 Score=117.42 Aligned_cols=85 Identities=24% Similarity=0.541 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEe
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~ 90 (178)
......++|||+|||+++++++|+++|+.||.|..+++..++ ++.++|||||+|.+.++|.+|++ ++..+.|+.|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 345567899999999999999999999999999999999998 89999999999999999999999 8999999999999
Q ss_pred ecCCCcc
Q psy2871 91 RAVPRDE 97 (178)
Q Consensus 91 ~~~~~~~ 97 (178)
++.....
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 8876554
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=119.79 Aligned_cols=86 Identities=17% Similarity=0.258 Sum_probs=75.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (178)
.+....+.++|||+|||+.+++++|+ ++|++||+|.+|.+.. +++++|||||+|.+.++|..|++. ++..+.
T Consensus 22 ~~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 22 TPPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp CCCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34455668899999999999999876 6999999999988753 678899999999999999999987 999999
Q ss_pred CeEEEEeecCCCcc
Q psy2871 84 GRVVETKRAVPRDE 97 (178)
Q Consensus 84 g~~i~v~~~~~~~~ 97 (178)
|++|+|.++.....
T Consensus 99 gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 99 GNPLVITFSETPQS 112 (127)
T ss_dssp TSCCEEEECCCCCH
T ss_pred CCEEEEEEccCcch
Confidence 99999999986543
No 108
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=115.62 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=77.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCCC------CHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CC
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRT------TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP 79 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~ 79 (178)
+..+......++|||+|||+.+ ++++|+++|++||.|.++++. ..+|.++|||||+|.+.++|.+|++. ++
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g 83 (105)
T 2nlw_A 6 DRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADG 83 (105)
T ss_dssp SCCCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred CCCCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3344455568899999999999 789999999999999999988 34789999999999999999999997 99
Q ss_pred ceecCe-EEEEeecCCCc
Q psy2871 80 HNIDGR-VVETKRAVPRD 96 (178)
Q Consensus 80 ~~~~g~-~i~v~~~~~~~ 96 (178)
..+.|+ .|+|.++....
T Consensus 84 ~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 84 YKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp EECSTTCEEEEECSCCCC
T ss_pred cccCCCceEEEEEcchHh
Confidence 999998 99999987654
No 109
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-20 Score=115.70 Aligned_cols=81 Identities=20% Similarity=0.468 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
+.+.++|||+|||+++++++|+++|++||+|..+++..++.++.++|||||+|.+.++|..|++. ++..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999988899999999999999999999997 88889999888876
Q ss_pred cC
Q psy2871 92 AV 93 (178)
Q Consensus 92 ~~ 93 (178)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 110
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=1e-18 Score=116.32 Aligned_cols=86 Identities=21% Similarity=0.355 Sum_probs=79.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
......++|||+|||+++++++|+++|+.||.|..+++..+. ++.++|||||+|.+.++|.+|++. ++..+.|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 455677899999999999999999999999999999999998 899999999999999999999996 999999999999
Q ss_pred eecCCCcc
Q psy2871 90 KRAVPRDE 97 (178)
Q Consensus 90 ~~~~~~~~ 97 (178)
.++.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99877544
No 111
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=6.1e-20 Score=116.65 Aligned_cols=84 Identities=12% Similarity=0.180 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
......++|||+|||+++++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++. ++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 3445568999999999999999999999999999999999888899999999999999999999997 999999999999
Q ss_pred eecCC
Q psy2871 90 KRAVP 94 (178)
Q Consensus 90 ~~~~~ 94 (178)
.++..
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98753
No 112
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9.7e-19 Score=112.86 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=73.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc---CCceecCe
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGR 85 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~ 85 (178)
......++++|||+|||+++++++|+++|++||.|.+++++++ +|||||+|.+.++|..|++. .+..+.|+
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 3445567899999999999999999999999999999998764 59999999999999999986 34568999
Q ss_pred EEEEeecCCCcccC
Q psy2871 86 VVETKRAVPRDEIG 99 (178)
Q Consensus 86 ~i~v~~~~~~~~~~ 99 (178)
+|.|.++..+....
T Consensus 82 ~l~V~~a~~~~~~~ 95 (104)
T 1wex_A 82 QAFFNYSTSKRITR 95 (104)
T ss_dssp BCEEEECSSSSCCC
T ss_pred EEEEEEccCccccC
Confidence 99999998766543
No 113
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=4.8e-19 Score=117.92 Aligned_cols=83 Identities=24% Similarity=0.499 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 94 (178)
+.++|||+|||+++++++|+++|++||.|.++++..++.++.++|||||+|.+.++|.+|++.++..+.|+.|.|.++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999999999999998899999999999999999999996599999999999999876
Q ss_pred Ccc
Q psy2871 95 RDE 97 (178)
Q Consensus 95 ~~~ 97 (178)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 114
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=115.80 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=79.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHH---HHHhhcCceeEEEEeeCCCCC---CccceEEEEeCCHHHHHHHHhc-CCce
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQ---AFFEQWGEIVDVVVMKDPITK---RSRGFGFITYSEAKMVDDAMSN-RPHN 81 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~---~~f~~~G~i~~~~~~~~~~~~---~~~g~afV~f~~~~~a~~a~~~-~~~~ 81 (178)
........++|||+|||+++++++|+ ++|++||+|.++++..+..++ .++|||||+|.+.++|++|++. ++..
T Consensus 8 ~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 8 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp SCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 33445567899999999999999999 999999999999999887644 5669999999999999999998 9999
Q ss_pred ecCeEEEEeecCCCcc
Q psy2871 82 IDGRVVETKRAVPRDE 97 (178)
Q Consensus 82 ~~g~~i~v~~~~~~~~ 97 (178)
+.|+.|+|.++.++..
T Consensus 88 ~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 88 VDGRTLKASLGTTKYC 103 (111)
T ss_dssp ETTEEEEEESCCCCSC
T ss_pred ECCEEEEEEecccccc
Confidence 9999999999987763
No 115
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=115.35 Aligned_cols=86 Identities=21% Similarity=0.358 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEe-eCCCCCCccceEEEEeCCHHHHHHHHhc-C--CceecCeEE
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVM-KDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDGRVV 87 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~afV~f~~~~~a~~a~~~-~--~~~~~g~~i 87 (178)
..+.++|||+|||+++++++|+++|+.||. |.++.+. .+..++.++|||||+|.+.++|..|++. + +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 7777889999999999999999999997 4 589999999
Q ss_pred EEeecCCCccc
Q psy2871 88 ETKRAVPRDEI 98 (178)
Q Consensus 88 ~v~~~~~~~~~ 98 (178)
.|.++.+....
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999877653
No 116
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=117.61 Aligned_cols=87 Identities=10% Similarity=0.190 Sum_probs=76.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-C--CceecC
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDG 84 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~--~~~~~g 84 (178)
.......++++|||+|||+++++++|+++|++||.|.+++++.+ +|||||+|.+.++|.+|++. + +..+.|
T Consensus 23 ~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 23 DSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34445667899999999999999999999999999999999875 59999999999999999986 3 568999
Q ss_pred eEEEEeecCCCcccCC
Q psy2871 85 RVVETKRAVPRDEIGK 100 (178)
Q Consensus 85 ~~i~v~~~~~~~~~~~ 100 (178)
++|+|.++.++.....
T Consensus 97 r~l~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 97 QPIYIQFSNHKELKTD 112 (119)
T ss_dssp BCCEEEECSSSSCCCC
T ss_pred eEEEEEEccCCCCCcc
Confidence 9999999987766543
No 117
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=116.55 Aligned_cols=86 Identities=26% Similarity=0.546 Sum_probs=77.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
........++|||+|||+++++++|+++|++||.|.++++..++ +.++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 44456678999999999999999999999999999999999885 34899999999999999999997 9999999999
Q ss_pred EEeecCCCc
Q psy2871 88 ETKRAVPRD 96 (178)
Q Consensus 88 ~v~~~~~~~ 96 (178)
.|.++.++.
T Consensus 100 ~V~~a~~~~ 108 (109)
T 2err_A 100 EVNNATARV 108 (109)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCc
Confidence 999987653
No 118
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=3.2e-19 Score=117.87 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCc---eeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGE---IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i 87 (178)
......++|||+|||+++|+++|+++|+.||. |..+++..++. ++++|||||+|.+.++|.+|++.++..+.|+.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 34566789999999999999999999999999 89999999985 899999999999999999999999999999999
Q ss_pred EEeecCCCc
Q psy2871 88 ETKRAVPRD 96 (178)
Q Consensus 88 ~v~~~~~~~ 96 (178)
.|.++...+
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999886543
No 119
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=1.5e-19 Score=122.20 Aligned_cols=89 Identities=29% Similarity=0.523 Sum_probs=81.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
.+....+.++|||+|||+++++++|+++|+.||+|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345666788999999999999999999999999999999999988899999999999999999999997 8999999999
Q ss_pred EEeecCCCcc
Q psy2871 88 ETKRAVPRDE 97 (178)
Q Consensus 88 ~v~~~~~~~~ 97 (178)
.|.++.+...
T Consensus 120 ~V~~a~~~~~ 129 (135)
T 2lea_A 120 RVQMARYGRP 129 (135)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987554
No 120
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=7.6e-19 Score=121.48 Aligned_cols=86 Identities=23% Similarity=0.434 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.....++|||+|||+++++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999999998899999999999999999999997 8999999999999
Q ss_pred ecCCCcc
Q psy2871 91 RAVPRDE 97 (178)
Q Consensus 91 ~~~~~~~ 97 (178)
++.+...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987554
No 121
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=7.1e-19 Score=108.58 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
-.+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++. ++..+.|++|+|..+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3567899999999999999999999999999999865 579999999999999999999 999999999999988
Q ss_pred C
Q psy2871 93 V 93 (178)
Q Consensus 93 ~ 93 (178)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 122
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=115.05 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 91 (178)
...+.++|||+|||+++++++|+++|+.| .|.+++++.++ .|+++|||||+|.+.++|.+|++.++..+.|+.|.|..
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 34456799999999999999999999999 89999999998 48999999999999999999998899999999999988
Q ss_pred cCCCc
Q psy2871 92 AVPRD 96 (178)
Q Consensus 92 ~~~~~ 96 (178)
+....
T Consensus 90 a~~~~ 94 (109)
T 2dnn_A 90 ATERQ 94 (109)
T ss_dssp CCHHH
T ss_pred CCccc
Confidence 76543
No 123
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=6e-19 Score=112.99 Aligned_cols=71 Identities=21% Similarity=0.432 Sum_probs=67.0
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.++|||+|||. +|+++|+++|++||+|..+.++++..++.++|||||+|.+.++|.+|++. ++..+.|++|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 46899999999 99999999999999999999999998999999999999999999999987 8888988876
No 124
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=6.6e-19 Score=122.93 Aligned_cols=87 Identities=17% Similarity=0.286 Sum_probs=79.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
....+.++|||+|||+.+++++|+++|++||+|..+.+..++.++.++|||||.|.+.++|..|++. ++..+.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445677899999999999999999999999999999999988999999999999999999999997 999999999999
Q ss_pred eecCCCcc
Q psy2871 90 KRAVPRDE 97 (178)
Q Consensus 90 ~~~~~~~~ 97 (178)
.++.+...
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 99876554
No 125
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=5.7e-20 Score=115.68 Aligned_cols=80 Identities=30% Similarity=0.671 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCC
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~ 95 (178)
++|||+|||+++++++|+++|++||+|.++++..++.++.++|||||+|.+.+ |..|++. ++..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 9999998 899999999999998775
Q ss_pred cc
Q psy2871 96 DE 97 (178)
Q Consensus 96 ~~ 97 (178)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 126
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=111.56 Aligned_cols=86 Identities=24% Similarity=0.440 Sum_probs=75.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
....+...++|||+|||+++++++|+++|++||.| +++.+ .++.++|||||+|.+.++|++|++. ++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 33456678999999999999999999999999987 55665 4788999999999999999999996 8999999999
Q ss_pred EEeecCCCccc
Q psy2871 88 ETKRAVPRDEI 98 (178)
Q Consensus 88 ~v~~~~~~~~~ 98 (178)
+|.++.+....
T Consensus 84 ~v~~a~~~~~~ 94 (101)
T 2fc9_A 84 RLELQGPRGSP 94 (101)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 127
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=109.21 Aligned_cols=80 Identities=20% Similarity=0.539 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
...+.++|||+|||+++++++|+++|++||+|..+++. +|||||+|.+.++|.+|++. ++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999987 48999999999999999987 8999999999999
Q ss_pred ecCCCcccC
Q psy2871 91 RAVPRDEIG 99 (178)
Q Consensus 91 ~~~~~~~~~ 99 (178)
++.+.....
T Consensus 76 ~a~~~~~~~ 84 (90)
T 2dnq_A 76 ASKNKSKAS 84 (90)
T ss_dssp CSSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998766543
No 128
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.8e-19 Score=121.63 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCc---eeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGE---IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i 87 (178)
......++|||+|||+++|+++|+++|++||. |.++++..++. ++++|||||+|.+.++|.+|++.++..+.|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 34556789999999999999999999999999 89999999986 999999999999999999999998999999999
Q ss_pred EEeecCCCc
Q psy2871 88 ETKRAVPRD 96 (178)
Q Consensus 88 ~v~~~~~~~ 96 (178)
.|.++...+
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999886543
No 129
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=2.6e-19 Score=119.14 Aligned_cols=84 Identities=21% Similarity=0.408 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCcee--EEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~ 88 (178)
......++|||+|||+++|+++|+++|++| .|. +++++.++. |+++|||||+|.+.++|.+|++.++..+.|+.|.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 344567899999999999999999999999 566 899999985 9999999999999999999999988999999999
Q ss_pred EeecCCCc
Q psy2871 89 TKRAVPRD 96 (178)
Q Consensus 89 v~~~~~~~ 96 (178)
|.++...+
T Consensus 115 V~~a~~~e 122 (126)
T 2hgm_A 115 VFKSSQEE 122 (126)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99886543
No 130
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-18 Score=109.69 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=74.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecC----
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG---- 84 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g---- 84 (178)
+......++|||+|||+++++++|+++|++||+|..+++..+ |||||+|.+.++|++|++. ++..+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 334566889999999999999999999999999999999876 8999999999999999996 8999999
Q ss_pred -eEEEEeecCCCcccC
Q psy2871 85 -RVVETKRAVPRDEIG 99 (178)
Q Consensus 85 -~~i~v~~~~~~~~~~ 99 (178)
+.|.|.++.+.....
T Consensus 82 ~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 82 TAYIRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEEEEESSCCSCCC
T ss_pred ceEEEEEeCCCCCCCC
Confidence 999999998866543
No 131
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=114.26 Aligned_cols=84 Identities=15% Similarity=0.379 Sum_probs=75.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCcee-------
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI------- 82 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~------- 82 (178)
....+.++|||+|||+++++++|+++|+.||.|..+++..++ ++.++|||||.|.+.++|..|++. ++..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345667899999999999999999999999999999999998 899999999999999999999997 88877
Q ss_pred -cCeEEEEeecCCC
Q psy2871 83 -DGRVVETKRAVPR 95 (178)
Q Consensus 83 -~g~~i~v~~~~~~ 95 (178)
.+++|.|.++.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5778888888753
No 132
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=116.89 Aligned_cols=86 Identities=19% Similarity=0.201 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCc---eeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGE---IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (178)
.......++|||+|||+++|+++|+++|+.||. |..+++..++. ++++|||||+|.+.++|.+|++.++..+.|+.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 345667889999999999999999999999988 89999999986 99999999999999999999999889999999
Q ss_pred EEEeecCCCc
Q psy2871 87 VETKRAVPRD 96 (178)
Q Consensus 87 i~v~~~~~~~ 96 (178)
|.|.++.+..
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999887544
No 133
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=113.01 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=69.0
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|++.++|++|++. ++..+.|++|
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 35678999999999 99999999999999999999999999999999999999999999999987 7888888876
No 134
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=119.48 Aligned_cols=85 Identities=14% Similarity=0.315 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 91 (178)
.....++|||+|||+++++++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|.+|++.++..+.|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 44567899999999999999999999999999886666666689999999999999999999999999999999999998
Q ss_pred cCCCc
Q psy2871 92 AVPRD 96 (178)
Q Consensus 92 ~~~~~ 96 (178)
+....
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87644
No 135
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=110.82 Aligned_cols=84 Identities=23% Similarity=0.427 Sum_probs=75.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
.......+.++|||+|||+++++++|+++|++||+|..+++..+ +|||||+|.+.++|.+|++. ++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 34445667889999999999999999999999999999999854 59999999999999999987 899999999
Q ss_pred EEEeecCCCcc
Q psy2871 87 VETKRAVPRDE 97 (178)
Q Consensus 87 i~v~~~~~~~~ 97 (178)
|+|.++.+...
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpj_A 81 LRVRFACHSAS 91 (99)
T ss_dssp CEEEESSCCSC
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 136
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=2e-18 Score=107.87 Aligned_cols=75 Identities=36% Similarity=0.626 Sum_probs=70.1
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.++..++|++|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i 82 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVI 82 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEE
Confidence 345678999999999 999999999999999999999999888999999999999999999999989999999876
No 137
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-18 Score=107.11 Aligned_cols=81 Identities=17% Similarity=0.386 Sum_probs=73.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
.......++|||+|||+++++++|+++|++||.|..+++.+ +||||+|.+.++|.+|++. ++..+.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 44567789999999999999999999999999999999873 5999999999999999987 99999999999
Q ss_pred EeecCCCccc
Q psy2871 89 TKRAVPRDEI 98 (178)
Q Consensus 89 v~~~~~~~~~ 98 (178)
|.++.+....
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 138
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=106.47 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=72.0
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc--CCceecCe
Q psy2871 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGR 85 (178)
Q Consensus 8 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~--~~~~~~g~ 85 (178)
..+..+...++|||+|||+++++++|+++|++||+|..+++..+ +|||||+|.+.++|..|++. ++..+.|+
T Consensus 4 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 4 GSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 34456677899999999999999999999999999999999864 59999999999999999995 78999999
Q ss_pred EEEEeecC
Q psy2871 86 VVETKRAV 93 (178)
Q Consensus 86 ~i~v~~~~ 93 (178)
.|+|.++.
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999863
No 139
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-19 Score=116.49 Aligned_cols=87 Identities=20% Similarity=0.306 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v 89 (178)
.......++|||+|||+++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++.++..+.|+.|.|
T Consensus 11 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 89 (101)
T 1fj7_A 11 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 89 (101)
T ss_dssp STTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEE
Confidence 344556889999999999999999999999999888 5666666788999999999999999999998889999999999
Q ss_pred eecCCCcc
Q psy2871 90 KRAVPRDE 97 (178)
Q Consensus 90 ~~~~~~~~ 97 (178)
.++.+...
T Consensus 90 ~~a~~~~~ 97 (101)
T 1fj7_A 90 EKPKGRDG 97 (101)
T ss_dssp ECCSCCCC
T ss_pred EEcCCCCC
Confidence 99977554
No 140
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=113.57 Aligned_cols=81 Identities=16% Similarity=0.276 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc---CCceecCeEE
Q psy2871 12 EPESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRVV 87 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~i 87 (178)
...++++|||+|||++ +++++|+++|++||.|.++++.+ .+|||||+|.+.++|..|++. ++..+.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4566899999999998 99999999999999999999974 469999999999999999986 4567999999
Q ss_pred EEeecCCCccc
Q psy2871 88 ETKRAVPRDEI 98 (178)
Q Consensus 88 ~v~~~~~~~~~ 98 (178)
+|.++......
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99998765543
No 141
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=6.6e-18 Score=108.84 Aligned_cols=83 Identities=23% Similarity=0.412 Sum_probs=74.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
.+......++|||+|||+++++++|+++|++||.|..+++. +|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 4 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 4 GSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 34455678999999999999999999999999999999886 36999999999999999997 9999999999
Q ss_pred EEeecCCCcccC
Q psy2871 88 ETKRAVPRDEIG 99 (178)
Q Consensus 88 ~v~~~~~~~~~~ 99 (178)
.|.++.+.....
T Consensus 76 ~v~~a~~~~~~~ 87 (103)
T 2dgu_A 76 EIVFAKPPDQKR 87 (103)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEcCCCcccc
Confidence 999998766543
No 142
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=2.4e-18 Score=122.68 Aligned_cols=89 Identities=28% Similarity=0.636 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 91 (178)
.....++|||+|||+++++++|+++|+.||.|..+.+..+..++.++|||||.|.+.++|.+|+..++..+.|+.|.|.+
T Consensus 100 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 100 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179 (196)
T ss_dssp ---CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEe
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cCCCcccCC
Q psy2871 92 AVPRDEIGK 100 (178)
Q Consensus 92 ~~~~~~~~~ 100 (178)
+.++.....
T Consensus 180 a~~k~~~~~ 188 (196)
T 1l3k_A 180 ALSKQEMAS 188 (196)
T ss_dssp CC-------
T ss_pred cCChhHhcc
Confidence 988776543
No 143
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=110.79 Aligned_cols=81 Identities=21% Similarity=0.467 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.....++|||+|||+++++++|+++|++||.|..+++..+ +|||||.|.+.++|.+|++. ++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999876 59999999999999999987 9999999999999
Q ss_pred ecCCCccc
Q psy2871 91 RAVPRDEI 98 (178)
Q Consensus 91 ~~~~~~~~ 98 (178)
++.+....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99876654
No 144
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-19 Score=116.05 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.....++|||+|||+++++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 345678999999999999999999999999994332222222778999999999999999999987 8999999999999
Q ss_pred ecCCCcccC
Q psy2871 91 RAVPRDEIG 99 (178)
Q Consensus 91 ~~~~~~~~~ 99 (178)
++.+.....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 998766543
No 145
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-19 Score=117.98 Aligned_cols=82 Identities=23% Similarity=0.377 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCce----eEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEE
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEI----VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i----~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v 89 (178)
.+.++|||+|||+++|+++|+++|++||+| ..++++.+. +++++|||||+|.+.++|.+|++.++..+.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 456899999999999999999999999875 689999985 899999999999999999999999999999999999
Q ss_pred eecCCCc
Q psy2871 90 KRAVPRD 96 (178)
Q Consensus 90 ~~~~~~~ 96 (178)
..+...+
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 8876543
No 146
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4e-18 Score=109.58 Aligned_cols=89 Identities=26% Similarity=0.410 Sum_probs=78.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
..........++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|.+|++. ++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 6 SGPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp CTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34445667789999999999999999999999774 677888888899999999999999999999997 99999999
Q ss_pred EEEEeecCCCccc
Q psy2871 86 VVETKRAVPRDEI 98 (178)
Q Consensus 86 ~i~v~~~~~~~~~ 98 (178)
.|.|.++.++...
T Consensus 83 ~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 83 KVTLDWAKPKGEG 95 (102)
T ss_dssp ECEEEECCCCCSS
T ss_pred EEEEEEecCCCCC
Confidence 9999999876654
No 147
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=6.5e-18 Score=106.22 Aligned_cols=79 Identities=16% Similarity=0.424 Sum_probs=71.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
..+...++|||+|||+++++++|+++|++||.|..+++.+ +||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456788999999999999999999999999999999873 5999999999999999997 999999999999
Q ss_pred eecCCCcc
Q psy2871 90 KRAVPRDE 97 (178)
Q Consensus 90 ~~~~~~~~ 97 (178)
.++.+...
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987644
No 148
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=7.1e-19 Score=108.53 Aligned_cols=72 Identities=14% Similarity=0.293 Sum_probs=65.9
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe-EE
Q psy2871 16 LRKVFIGGLDYRT------TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR-VV 87 (178)
Q Consensus 16 ~~~l~v~nlp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~-~i 87 (178)
+++|||+|||+.+ ++++|+++|++||+|.++++. ..++.++|||||+|.+.++|.+|++. ++..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 679999999999999999987 34789999999999999999999997 89999998 88
Q ss_pred EE
Q psy2871 88 ET 89 (178)
Q Consensus 88 ~v 89 (178)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 149
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=1.2e-18 Score=111.07 Aligned_cols=82 Identities=20% Similarity=0.445 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
+..++++|||+|||+++++++|+ ++|++||.|.++.+.. ++.++|||||+|.+.++|..|++. ++..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45678899999999999999999 9999999999998873 567889999999999999999997 999999999
Q ss_pred EEEeecCCCc
Q psy2871 87 VETKRAVPRD 96 (178)
Q Consensus 87 i~v~~~~~~~ 96 (178)
|+|.++.+..
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998754
No 150
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-17 Score=105.90 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhc--CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec
Q psy2871 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQW--GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (178)
Q Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (178)
..........++|||+|||+++++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|++. ++..+.
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 6 SGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3344455678999999999999999999999999 999988764 47999999999999999996 999999
Q ss_pred CeEEEEeecCCCcc
Q psy2871 84 GRVVETKRAVPRDE 97 (178)
Q Consensus 84 g~~i~v~~~~~~~~ 97 (178)
|+.|.|.++.+...
T Consensus 78 g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 78 GSPIEVTLAKPVDK 91 (99)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999987654
No 151
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.1e-18 Score=109.93 Aligned_cols=77 Identities=21% Similarity=0.377 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.+...++|||+|||+++++++|+++|+.||.|.++++.. ++|||||+|.+.++|..|++. ++..+.|+.|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344578999999999999999999999999999999873 569999999999999999987 9999999999999
Q ss_pred ecCC
Q psy2871 91 RAVP 94 (178)
Q Consensus 91 ~~~~ 94 (178)
++.+
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9865
No 152
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=6.8e-18 Score=107.66 Aligned_cols=79 Identities=22% Similarity=0.395 Sum_probs=69.6
Q ss_pred CCCCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 9 KCTEPESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
......+.++|||+|||+ ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++. ++..+.|+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 444566789999999998 99999999999999999999983 58999999999999999997 999999999
Q ss_pred EEEeecCCC
Q psy2871 87 VETKRAVPR 95 (178)
Q Consensus 87 i~v~~~~~~ 95 (178)
|+|.++.+.
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998754
No 153
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=110.26 Aligned_cols=73 Identities=16% Similarity=0.347 Sum_probs=67.7
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
....++|||+|||. +|+++|+++|++||+|..+.++.+.. +.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l 81 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 81 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEE
Confidence 34568899999999 99999999999999999999999987 899999999999999999999988889999876
No 154
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=108.23 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec--CeEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID--GRVV 87 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~--g~~i 87 (178)
......++|||+|||+++++++|+++|++||.|.++++..+ +|||||+|.+.++|.+|++. ++..+. |+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 34556789999999999999999999999999999998754 58999999999999999997 889999 9999
Q ss_pred EEeecCCCc
Q psy2871 88 ETKRAVPRD 96 (178)
Q Consensus 88 ~v~~~~~~~ 96 (178)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998754
No 155
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=5.7e-19 Score=111.38 Aligned_cols=71 Identities=27% Similarity=0.482 Sum_probs=64.7
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccC-ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhc-C-eecccccc
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSK-I-TLLLDRRV 177 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~-~-~~~~g~~v 177 (178)
+++|||+|||. +|+++|+++|++|| +|..+++++++.++.++|||||+|.+.++|.+|++.+ + ..+.|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i 75 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKV 75 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEE
Confidence 46899999999 99999999999999 7999999999989999999999999999999999873 3 46888876
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=105.33 Aligned_cols=82 Identities=17% Similarity=0.370 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 91 (178)
.....++|||+|||+++++++|+++|++||.|.++ +.++.++. ||||+|.+.++|.+|++.++..+.|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP 78 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEE
Confidence 45567899999999999999999999999999987 45544544 99999999999999999889999999999998
Q ss_pred cCCCccc
Q psy2871 92 AVPRDEI 98 (178)
Q Consensus 92 ~~~~~~~ 98 (178)
+.+....
T Consensus 79 a~~~~~~ 85 (94)
T 2e5g_A 79 REQKEFQ 85 (94)
T ss_dssp SCCSCCC
T ss_pred CCcCCCC
Confidence 8765543
No 157
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=1.2e-17 Score=108.80 Aligned_cols=77 Identities=19% Similarity=0.441 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 13 PESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
....++|||+|||++ +++++|+++|++||+|..+++ .+|||||+|.+.++|..|++. ++..+.|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344589999999999 999999999999999999998 468999999999999999977 9999999999999
Q ss_pred ecCCCcc
Q psy2871 91 RAVPRDE 97 (178)
Q Consensus 91 ~~~~~~~ 97 (178)
++.....
T Consensus 96 ~a~~~~~ 102 (110)
T 1wf1_A 96 MAGEPKP 102 (110)
T ss_dssp ESCCCCS
T ss_pred ECCCCCC
Confidence 9875443
No 158
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=3.5e-18 Score=111.42 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
+...++|||+|||+++++++|+++|++|| +|..+.+..+ .++|||||+|.+.++|++|++. ++..+.|+.|+|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44578999999999999999999999999 8999988532 4789999999999999999986 9999999999999
Q ss_pred ecCCC
Q psy2871 91 RAVPR 95 (178)
Q Consensus 91 ~~~~~ 95 (178)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98654
No 159
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=5.9e-18 Score=110.03 Aligned_cols=80 Identities=16% Similarity=0.348 Sum_probs=71.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
...+...++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++. ++..+.|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3455678899999999999999999999999999999987 58999999999999999997 99999999999
Q ss_pred EeecCCCcc
Q psy2871 89 TKRAVPRDE 97 (178)
Q Consensus 89 v~~~~~~~~ 97 (178)
|.++.+...
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999876543
No 160
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=109.36 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=73.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
......+.++|||+|||+++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 44456678999999999999999999999999988766 23678999999999999999999996 8899999999
Q ss_pred EEeecCCCc
Q psy2871 88 ETKRAVPRD 96 (178)
Q Consensus 88 ~v~~~~~~~ 96 (178)
.|.++.+..
T Consensus 84 ~v~~a~~~~ 92 (96)
T 1fjc_A 84 SLYYTGEKG 92 (96)
T ss_dssp EEEECSSSC
T ss_pred EEEEcCCCC
Confidence 999987654
No 161
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-19 Score=111.29 Aligned_cols=75 Identities=12% Similarity=0.329 Sum_probs=66.6
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCc--eeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCe-----eccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGT--IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKIT-----LLLD 174 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~--v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~-----~~~g 174 (178)
....+.+|||+|||. +|+++|+++|++||. +.++++++++.++.++|||||+|.+.++|.+|++.+++ .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 345678999999999 999999999999995 67999999998999999999999999999999998433 4888
Q ss_pred ccc
Q psy2871 175 RRV 177 (178)
Q Consensus 175 ~~v 177 (178)
++|
T Consensus 85 r~i 87 (95)
T 2lkz_A 85 KTI 87 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 162
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=107.58 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.....++|||+|||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445578999999999999999999999999997 666653 5789999999999999999987 9999999999999
Q ss_pred ecCCCc
Q psy2871 91 RAVPRD 96 (178)
Q Consensus 91 ~~~~~~ 96 (178)
++.+..
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 987654
No 163
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=6.1e-19 Score=119.42 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~ 91 (178)
.....++|||+|||+++|+++|+++|++|| +.+++++.++. ++++|||||+|.+.++|.+|++.++..+.|+.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 67999999985 9999999999999999999997799999999999998
Q ss_pred cCCCcc
Q psy2871 92 AVPRDE 97 (178)
Q Consensus 92 ~~~~~~ 97 (178)
+.....
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876554
No 164
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=3.7e-18 Score=125.01 Aligned_cols=81 Identities=19% Similarity=0.344 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.++.+++++|||||+|.+.++|.+||+. ++..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999997 89999999999998
Q ss_pred cCCC
Q psy2871 92 AVPR 95 (178)
Q Consensus 92 ~~~~ 95 (178)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 165
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=106.57 Aligned_cols=75 Identities=36% Similarity=0.676 Sum_probs=69.3
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.++..+.|++|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l 81 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKV 81 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEE
Confidence 345678999999999 999999999999999999999999888999999999999999999999988888888876
No 166
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=7.2e-18 Score=115.82 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=74.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
.......++|||+|||+++++++|+++|++||.|.++++..+ ++|||||+|.+.++|..|++. ++..+.|++|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 445567899999999999999999999999999999999876 579999999999999999996 89999999999
Q ss_pred EeecCCCc
Q psy2871 89 TKRAVPRD 96 (178)
Q Consensus 89 v~~~~~~~ 96 (178)
|.++.+..
T Consensus 142 v~~a~~~~ 149 (150)
T 2i2y_A 142 VELSNGEK 149 (150)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99987653
No 167
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=107.08 Aligned_cols=80 Identities=19% Similarity=0.429 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CC-ceecCeEEE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP-HNIDGRVVE 88 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~-~~~~g~~i~ 88 (178)
.....++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++. ++ ..+.|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4566889999999999999999999999999 6666653 368999999999999999997 88 999999999
Q ss_pred EeecCCCccc
Q psy2871 89 TKRAVPRDEI 98 (178)
Q Consensus 89 v~~~~~~~~~ 98 (178)
|.++.+....
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=6.3e-18 Score=106.14 Aligned_cols=81 Identities=33% Similarity=0.512 Sum_probs=63.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEe
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~ 90 (178)
..+.+..+|||+|||+++|+++|+++|++||+|.+++++.+ ++|||||+|.+.++|.++.. ....+.|+.|.|.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEE
Confidence 34566789999999999999999999999999999999874 78999999999999985433 3455679999999
Q ss_pred ecCCCcc
Q psy2871 91 RAVPRDE 97 (178)
Q Consensus 91 ~~~~~~~ 97 (178)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9887543
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.5e-17 Score=115.28 Aligned_cols=84 Identities=25% Similarity=0.487 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
.....+.++|||+|||+++++++|+++|++||.|..+.+..+..++.++|||||.|.+.++|.+|++. ++..+.|+.|.
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 34556788999999999999999999999999999999999988999999999999999999999997 99999999999
Q ss_pred EeecC
Q psy2871 89 TKRAV 93 (178)
Q Consensus 89 v~~~~ 93 (178)
|.++.
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99875
No 170
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-18 Score=110.96 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
...+.++|||+|||+++++++|+++|++||.|..+.+.. .+|||||+|.+.++|..|++. ++..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 455678999999999999999999999999999998864 568999999999999999997 9999999999999
Q ss_pred ecCCCcc
Q psy2871 91 RAVPRDE 97 (178)
Q Consensus 91 ~~~~~~~ 97 (178)
++.....
T Consensus 80 ~a~~~~~ 86 (111)
T 1whx_A 80 WAPIGVF 86 (111)
T ss_dssp EEETTTT
T ss_pred ECCCCcc
Confidence 9876443
No 171
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=103.67 Aligned_cols=73 Identities=22% Similarity=0.394 Sum_probs=66.9
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.+.++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 4567899999999 99999999999999999999999988899999999999999999999997 7888888876
No 172
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7e-18 Score=105.64 Aligned_cols=80 Identities=26% Similarity=0.510 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecC
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~ 93 (178)
...++|||+|||+++++++|+++|++||+|.++++..+ ++|||||+|.+.++|++|... ...+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 45789999999999999999999999999999998764 679999999999999876554 566789999999988
Q ss_pred CCcccC
Q psy2871 94 PRDEIG 99 (178)
Q Consensus 94 ~~~~~~ 99 (178)
++....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 766543
No 173
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1.1e-17 Score=104.00 Aligned_cols=74 Identities=28% Similarity=0.513 Sum_probs=68.4
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 35678999999999 99999999999999999999999988899999999999999999999976 8888888876
No 174
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=105.85 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=72.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEE-EEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDV-VVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
.......++|||+|||+++++++|+++|+.||.|..+ .+..++.+ |.|||+|.+.++|..|++. ++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 9 VPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3344567899999999999999999999999999999 47777644 3499999999999999996 9999999999
Q ss_pred EEeecCCCc
Q psy2871 88 ETKRAVPRD 96 (178)
Q Consensus 88 ~v~~~~~~~ 96 (178)
.|.++.+..
T Consensus 85 ~V~~a~~~~ 93 (96)
T 2e44_A 85 KVAYIPDEM 93 (96)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCccc
Confidence 999998764
No 175
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=9.3e-18 Score=118.29 Aligned_cols=85 Identities=21% Similarity=0.360 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEe
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~ 90 (178)
.....++|||+|||+.+++++|+++|+.||+|..+.+..+. ++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 899999999999999999999996 8999999999999
Q ss_pred ecCCCcc
Q psy2871 91 RAVPRDE 97 (178)
Q Consensus 91 ~~~~~~~ 97 (178)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9876543
No 176
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-17 Score=104.15 Aligned_cols=76 Identities=32% Similarity=0.413 Sum_probs=69.9
Q ss_pred CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
....+.++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3446678999999999 99999999999999999999999988899999999999999999999997 8888888876
No 177
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-19 Score=119.03 Aligned_cols=88 Identities=19% Similarity=0.330 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeE--------EEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCcee
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD--------VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~ 82 (178)
...+.++|||+|||+++++++|+++|++||.|.. +++..++.++.++|||||+|.+.++|.+|++. ++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999998 89999887899999999999999999999997 89999
Q ss_pred cCeEEEEeecCCCcccC
Q psy2871 83 DGRVVETKRAVPRDEIG 99 (178)
Q Consensus 83 ~g~~i~v~~~~~~~~~~ 99 (178)
.|+.|.|.++.+.....
T Consensus 83 ~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 83 SGNPIKVSFATRRADFN 99 (116)
Confidence 99999999998776543
No 178
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=4.9e-18 Score=114.71 Aligned_cols=111 Identities=21% Similarity=0.268 Sum_probs=70.2
Q ss_pred eEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEE
Q psy2871 60 FGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVN 137 (178)
Q Consensus 60 ~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~ 137 (178)
++|..|.+...+..|+.. ++....|+. .+... .........++|||+|||. +++++|+++|++||.|..+.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~ 78 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYG------RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY 78 (135)
T ss_dssp ------------------------------CCSC------CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcC------CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 677777888888888887 333333332 11111 1223345568999999999 99999999999999999999
Q ss_pred eeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 138 MVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 138 i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 999988899999999999999999999987 7788888775
No 179
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-17 Score=108.06 Aligned_cols=77 Identities=30% Similarity=0.631 Sum_probs=70.2
Q ss_pred CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 101 PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 101 ~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
.....+.++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 33456678999999999 999999999999999999999999888999999999999999999999997778888876
No 180
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.9e-18 Score=107.40 Aligned_cols=79 Identities=22% Similarity=0.397 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 12 EPESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
...+.++|||+|||+ .+++++|+++|++||+|.++++. +|||||+|.+.++|..|++. ++..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456688999999998 99999999999999999999984 58999999999999999997 899999999999
Q ss_pred eecCCCccc
Q psy2871 90 KRAVPRDEI 98 (178)
Q Consensus 90 ~~~~~~~~~ 98 (178)
.++.+....
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 998765543
No 181
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=104.32 Aligned_cols=73 Identities=27% Similarity=0.521 Sum_probs=68.0
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.++++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 4568999999999 99999999999999999999999988899999999999999999999996 8888888876
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=5.1e-18 Score=118.03 Aligned_cols=81 Identities=41% Similarity=0.733 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 94 (178)
..++|||+|||+++++++|+++|++||.|..+++..++.++.++|||||.|.+.++|.+|++.++..+.|+.|.|.++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 46789999999999999999999999999999999998889999999999999999999999888999999999999987
Q ss_pred C
Q psy2871 95 R 95 (178)
Q Consensus 95 ~ 95 (178)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 183
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.5e-17 Score=104.28 Aligned_cols=75 Identities=21% Similarity=0.468 Sum_probs=68.3
Q ss_pred CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
......++|||+|||. +++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445678999999999 9999999999999999999999988 789999999999999999999977 8888888875
No 184
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=7e-18 Score=102.43 Aligned_cols=69 Identities=33% Similarity=0.685 Sum_probs=65.3
Q ss_pred EEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 109 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 109 ~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
+|||+|||. +++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.++..+.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEE
Confidence 489999999 999999999999999999999999888999999999999999999999988889999876
No 185
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-16 Score=102.01 Aligned_cols=82 Identities=18% Similarity=0.351 Sum_probs=72.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
........++|||+|| ++++++|+++|++||+|..+.+. .++|||||.|.+.++|.+|++. ++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 8 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred ccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3445567889999996 99999999999999999999984 4679999999999999999977 8999999999
Q ss_pred EEeecCCCccc
Q psy2871 88 ETKRAVPRDEI 98 (178)
Q Consensus 88 ~v~~~~~~~~~ 98 (178)
.|.++.+....
T Consensus 80 ~v~~a~~~~~~ 90 (97)
T 1x5p_A 80 KVNIARKQPML 90 (97)
T ss_dssp EEECCSSCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 186
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=3.1e-17 Score=114.58 Aligned_cols=81 Identities=23% Similarity=0.469 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
....++|||+|||+++++++|+++|++||+|..+++..++.++.++|||||.|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999997 99999999999998
Q ss_pred cC
Q psy2871 92 AV 93 (178)
Q Consensus 92 ~~ 93 (178)
+.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 187
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=4.2e-18 Score=103.40 Aligned_cols=70 Identities=39% Similarity=0.703 Sum_probs=66.2
Q ss_pred EEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccccC
Q psy2871 109 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 109 ~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
+|||+|||. +++++|+++|++||+|..+.++.+..++.++|||||+|.+.++|.+|+..++..+.|++|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 489999999 9999999999999999999999998889999999999999999999999999999998863
No 188
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=104.85 Aligned_cols=74 Identities=23% Similarity=0.379 Sum_probs=68.0
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 35668999999999 99999999999999999999999988899999999999999999999966 7788888875
No 189
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-17 Score=105.97 Aligned_cols=77 Identities=32% Similarity=0.544 Sum_probs=70.2
Q ss_pred CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 101 PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 101 ~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.......++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 44456778999999999 99999999999999999999999988899999999999999999999986 8888888876
No 190
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=2.3e-17 Score=104.89 Aligned_cols=72 Identities=25% Similarity=0.454 Sum_probs=66.8
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
++++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 357899999999 99999999999999999999999988899999999999999999999987 7788888775
No 191
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.4e-17 Score=108.42 Aligned_cols=73 Identities=34% Similarity=0.582 Sum_probs=66.9
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
...++|||+|||. +++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+..++..++|++|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l 96 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI 96 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEE
Confidence 4567899999999 999999999999999999999999888999999999999999999999998899999876
No 192
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=3.8e-17 Score=101.03 Aligned_cols=70 Identities=27% Similarity=0.444 Sum_probs=65.9
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.+|||+|||. +++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|.+|+.. ++..+.|++|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 5799999999 99999999999999999999999988899999999999999999999997 8888888875
No 193
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.6e-17 Score=104.88 Aligned_cols=74 Identities=19% Similarity=0.495 Sum_probs=68.5
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 34568999999999 99999999999999999999999988899999999999999999999997 8888888876
No 194
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=106.36 Aligned_cols=75 Identities=33% Similarity=0.644 Sum_probs=69.8
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 87 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNI 87 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence 445678999999999 999999999999999999999999888999999999999999999999998888988876
No 195
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-17 Score=104.98 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=69.0
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 445678999999999 99999999999999999999999988899999999999999999999997 7778888876
No 196
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=103.50 Aligned_cols=73 Identities=21% Similarity=0.429 Sum_probs=67.0
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.+.++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|+.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 4567999999999 99999999999999999999999988899999999999999999999997 7777777765
No 197
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=103.89 Aligned_cols=75 Identities=25% Similarity=0.428 Sum_probs=68.7
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|++. ++..+.|++|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 345678999999999 99999999999999999999999988889999999999999999999976 8888888875
No 198
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=8.5e-18 Score=105.71 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=63.4
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhccC--ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~G--~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.+|||+|||. +++++|+++|++|| .|..+.+..+..++.++|||||+|.+.++|.+|++. ++..+.|++|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 4799999999 99999999999999 999999999988999999999999999999999976 7778888876
No 199
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=3.8e-17 Score=116.70 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~ 94 (178)
..++|||+|||+++++++|+++|++||+|..+++..+. ++.++|||||+|.+.++|.+|++..+..+.|+.|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 46899999999999999999999999999999999987 58899999999999999999999877799999999998876
Q ss_pred Ccc
Q psy2871 95 RDE 97 (178)
Q Consensus 95 ~~~ 97 (178)
...
T Consensus 187 y~~ 189 (193)
T 2voo_A 187 YFA 189 (193)
T ss_dssp C--
T ss_pred HHH
Confidence 543
No 200
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=3.3e-17 Score=102.59 Aligned_cols=72 Identities=25% Similarity=0.540 Sum_probs=67.1
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
..++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l 77 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 77 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEE
Confidence 457899999999 999999999999999999999999888999999999999999999999558888998876
No 201
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.7e-17 Score=104.75 Aligned_cols=75 Identities=25% Similarity=0.401 Sum_probs=68.9
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 345678999999999 99999999999999999999999988899999999999999999999996 7788888875
No 202
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=4.4e-17 Score=101.62 Aligned_cols=73 Identities=22% Similarity=0.515 Sum_probs=66.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCce
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQW----G-------EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHN 81 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~ 81 (178)
....++|||+|||+++++++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+..++..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 4568999999999999999999999999 8 9999998754 599999999999999999559999
Q ss_pred ecCeEEEEee
Q psy2871 82 IDGRVVETKR 91 (178)
Q Consensus 82 ~~g~~i~v~~ 91 (178)
+.|+.|+|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999875
No 203
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.3e-17 Score=108.49 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=69.3
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCC----HHH----HHHHHh--c-CCce
Q psy2871 17 RKVFIGGL----DYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE----AKM----VDDAMS--N-RPHN 81 (178)
Q Consensus 17 ~~l~v~nl----p~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~----~~~----a~~a~~--~-~~~~ 81 (178)
..|||+|| |+.+++++|+++|++||+|.++.++.|+.+|+++|||||+|.+ +.. |.+|+. . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 333 788877 4 8999
Q ss_pred ecCeEEEEeecC
Q psy2871 82 IDGRVVETKRAV 93 (178)
Q Consensus 82 ~~g~~i~v~~~~ 93 (178)
+.|+.|+|....
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998654
No 204
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=2.5e-17 Score=103.08 Aligned_cols=76 Identities=9% Similarity=0.203 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
...++|||+|||+++++++|+++|++| .|.++++. .++|||||+|.+.++|.+|++. ++..+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 5789999999999999999997 999999999999998
Q ss_pred CCCc
Q psy2871 93 VPRD 96 (178)
Q Consensus 93 ~~~~ 96 (178)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6544
No 205
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=2e-18 Score=137.23 Aligned_cols=74 Identities=30% Similarity=0.493 Sum_probs=67.9
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.++|||+|||. +|+++|+.+|+.||.|..+.|+.+..++.++|||||+|.+.++|.+||.. ++..|.|+.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 34567999999999 99999999999999999999999988899999999999999999999977 7788888775
No 206
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.3e-18 Score=102.55 Aligned_cols=70 Identities=36% Similarity=0.610 Sum_probs=65.7
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
++|||+|||. +++++|+++|++||+|..+.++.++.++.++|+|||+|.+.++|.+|++.++..++|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEE
Confidence 3699999999 999999999999999999999999888999999999999999999999997788889876
No 207
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=5.1e-17 Score=105.82 Aligned_cols=75 Identities=17% Similarity=0.418 Sum_probs=68.8
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 345668999999999 99999999999999999999999988899999999999999999999996 8888888875
No 208
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=3.3e-17 Score=107.66 Aligned_cols=69 Identities=26% Similarity=0.544 Sum_probs=63.1
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+|||+|||. +++++|+++|++||.|..++++.+. +.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i 75 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 75 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 46899999999 9999999999999999999999885 45799999999999999999987 8888888875
No 209
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=7.3e-17 Score=103.13 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=69.0
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeE--------EEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeec
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES--------VNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLL 172 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~--------~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~ 172 (178)
...+.++|||+|||. +++++|+++|++||.|.. +.+..+..++.++|||||+|.+.++|.+|+.. ++..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 445678999999999 999999999999999999 99999988899999999999999999999986 88888
Q ss_pred ccccc
Q psy2871 173 LDRRV 177 (178)
Q Consensus 173 ~g~~v 177 (178)
.|++|
T Consensus 89 ~g~~l 93 (99)
T 2la6_A 89 SGNPI 93 (99)
T ss_dssp SSSBC
T ss_pred CCcEE
Confidence 88876
No 210
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=105.32 Aligned_cols=74 Identities=26% Similarity=0.369 Sum_probs=68.6
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 35578999999999 99999999999999999999999988899999999999999999999996 8888888876
No 211
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=1e-16 Score=105.20 Aligned_cols=75 Identities=23% Similarity=0.433 Sum_probs=68.8
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345678999999999 99999999999999999999999988899999999999999999999987 7778888775
No 212
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=107.81 Aligned_cols=79 Identities=23% Similarity=0.414 Sum_probs=68.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCC---CCccceEEEEeCCHHHHHHHHhcCCceecCeEEE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT---KRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~ 88 (178)
.....++|||+|||+++++++|+++|++||+|. +.++.+..+ |+++|||||+|.+.++|++|++.. ..++|+.+.
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~ 81 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYL 81 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEE
Confidence 445678999999999999999999999999999 888777766 689999999999999999999875 347787777
Q ss_pred Eeec
Q psy2871 89 TKRA 92 (178)
Q Consensus 89 v~~~ 92 (178)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6644
No 213
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=5e-17 Score=117.50 Aligned_cols=85 Identities=24% Similarity=0.571 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~ 92 (178)
...++|||+|||+++++++|+++|+.||.|..+++..+..++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999999988999999999999999999999997 999999999999999
Q ss_pred CCCccc
Q psy2871 93 VPRDEI 98 (178)
Q Consensus 93 ~~~~~~ 98 (178)
.+....
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876543
No 214
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.72 E-value=7.3e-17 Score=115.13 Aligned_cols=85 Identities=25% Similarity=0.498 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
....++|||+|||+++++++|+++|++||.|..+++..++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999988899999999999999999999997 99999999999999
Q ss_pred cCCCcc
Q psy2871 92 AVPRDE 97 (178)
Q Consensus 92 ~~~~~~ 97 (178)
+.+...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987543
No 215
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.6e-17 Score=103.62 Aligned_cols=74 Identities=23% Similarity=0.442 Sum_probs=68.2
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCcee-EEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIE-SVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRR 176 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~-~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~ 176 (178)
....+++|||+|||. +++++|+++|++||.|. .+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 345678999999999 99999999999999999 999999988899999999999999999999997 777888876
No 216
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=105.20 Aligned_cols=74 Identities=18% Similarity=0.318 Sum_probs=66.8
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeE-EEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccccC
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIES-VNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~-~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
.....+|||+|||. +++++|+++|+.||.|.. +.++.+ .++.++|||||+|.+.++|.+|+..++..+.|++|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEE
Confidence 34568999999999 999999999999999987 888887 678999999999999999999999988888888763
No 217
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=103.08 Aligned_cols=74 Identities=31% Similarity=0.553 Sum_probs=67.5
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+.. +..+.|++|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l 85 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWC 85 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEE
Confidence 345567899999999 99999999999999999999999988899999999999999999999995 678888765
No 218
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=7.2e-17 Score=102.31 Aligned_cols=74 Identities=26% Similarity=0.440 Sum_probs=67.7
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+..+.. +.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 345678999999999 99999999999999999999999876 88999999999999999999996 8888888876
No 219
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7e-17 Score=105.23 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCCCCCCeEEE--cCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCcee-----
Q psy2871 11 TEPESLRKVFI--GGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI----- 82 (178)
Q Consensus 11 ~~~~~~~~l~v--~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~----- 82 (178)
....++++||| +|||.++++++|+++|++||.|.++++.. .+|||||+|.+.++|.+|++. ++..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34556889999 77999999999999999999999998764 369999999999999999997 88877
Q ss_pred cCeEEEEeecCCCcc
Q psy2871 83 DGRVVETKRAVPRDE 97 (178)
Q Consensus 83 ~g~~i~v~~~~~~~~ 97 (178)
.|++|.|.++...++
T Consensus 94 ~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 94 QKITLYLNFVEKVQW 108 (114)
T ss_dssp CEEECEEEEESCCCC
T ss_pred CCcEEEEEecccCcc
Confidence 688899988765444
No 220
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=111.20 Aligned_cols=82 Identities=17% Similarity=0.268 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEE--------EEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDV--------VVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~--------~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (178)
...+++|||+|||+++|+++|+++|+.||.|..+ .+.. ++.++|||||.|.+.++|.+|++. ++..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~---~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK---EGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE---ETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc---CCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4567899999999999999999999999998763 3332 678999999999999999999997 999999
Q ss_pred CeEEEEeecCCCcc
Q psy2871 84 GRVVETKRAVPRDE 97 (178)
Q Consensus 84 g~~i~v~~~~~~~~ 97 (178)
|+.|.|.++.+...
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999976544
No 221
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=104.63 Aligned_cols=75 Identities=31% Similarity=0.566 Sum_probs=68.6
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 345678999999999 99999999999999999999999988889999999999999999999977 7788888876
No 222
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=7.4e-17 Score=105.87 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=68.9
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345668999999999 99999999999999999999999988899999999999999999999977 8888888875
No 223
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=1.1e-16 Score=110.45 Aligned_cols=82 Identities=12% Similarity=0.241 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecC--eEEE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVE 88 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~i~ 88 (178)
.+....+|||+|||+.+|+++|+++|++||.|.++++..+. .+|||||+|.+.++|..|++. ++..+.| +.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34456679999999999999999999999999999997543 568999999999999999998 8999966 9999
Q ss_pred EeecCCCcc
Q psy2871 89 TKRAVPRDE 97 (178)
Q Consensus 89 v~~~~~~~~ 97 (178)
|.++.+...
T Consensus 118 V~~Ak~~~l 126 (164)
T 1sjr_A 118 IDFSKLTSL 126 (164)
T ss_dssp EEECSSSSC
T ss_pred EEEecCCcc
Confidence 999987653
No 224
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.8e-17 Score=104.56 Aligned_cols=74 Identities=27% Similarity=0.390 Sum_probs=68.1
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-c------Ceecccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-K------ITLLLDR 175 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~------~~~~~g~ 175 (178)
..+.++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. + +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 35568999999999 99999999999999999999999988899999999999999999999998 5 7888888
Q ss_pred cc
Q psy2871 176 RV 177 (178)
Q Consensus 176 ~v 177 (178)
+|
T Consensus 92 ~l 93 (111)
T 1x4h_A 92 QL 93 (111)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 225
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=7.4e-17 Score=112.47 Aligned_cols=73 Identities=18% Similarity=0.428 Sum_probs=67.1
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...++|||+|||. +++++|+.+|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..|.|++|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4567899999999 99999999999999999999999988899999999999999999999987 7788888875
No 226
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-16 Score=102.61 Aligned_cols=74 Identities=27% Similarity=0.481 Sum_probs=67.7
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++|| |..+.++.+..++.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 85 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSL 85 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEE
Confidence 445678999999999 99999999999997 999999999888999999999999999999999558888888876
No 227
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=104.12 Aligned_cols=73 Identities=29% Similarity=0.570 Sum_probs=67.2
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEE-EeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESV-NMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~-~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.+.++|||+|||. +++++|+++|++||.|..+ .++.+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4568999999999 9999999999999999999 9999888899999999999999999999996 7778888775
No 228
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=103.03 Aligned_cols=74 Identities=22% Similarity=0.435 Sum_probs=67.1
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhc-cCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCee-cccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQ-FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITL-LLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~-~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~-~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++ ||.|..+.++.+. ++.++|||||+|.+.++|.+|+.. ++.. +.|++|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 345668999999999 999999999999 9999999999998 889999999999999999999997 6667 888775
No 229
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=8.6e-17 Score=127.87 Aligned_cols=85 Identities=25% Similarity=0.476 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEee
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~ 91 (178)
....++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||.|.+.++|.+||+. ++..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999988999999999999999999999977 99999999999999
Q ss_pred cCCCcc
Q psy2871 92 AVPRDE 97 (178)
Q Consensus 92 ~~~~~~ 97 (178)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 976543
No 230
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=100.29 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=61.3
Q ss_pred cEEEEeCCCc-c------cHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccc-cc
Q psy2871 108 KKMFVGGLKD-Q------EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDR-RV 177 (178)
Q Consensus 108 ~~l~v~~l~~-~------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~-~v 177 (178)
++|||+|||. + ++++|+++|++||.|..+.++ ..++.++|||||+|.+.++|.+|+.. ++..+.|+ +|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 6899999999 8 779999999999999999987 34688999999999999999999997 77788888 55
No 231
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=105.26 Aligned_cols=74 Identities=28% Similarity=0.513 Sum_probs=68.4
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 35678999999999 99999999999999999999999988899999999999999999999987 8888888875
No 232
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=2.9e-16 Score=104.04 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccce-EEEEeCCHHHHHHHHhc-CCceecC--eEEEE
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGF-GFITYSEAKMVDDAMSN-RPHNIDG--RVVET 89 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~-~~~~~~g--~~i~v 89 (178)
.....|||+|||+.+++++|+++|++||.|.++++... .|| |||+|.+.++|..|++. ++..+.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 33445789999999999999999999999999999753 286 99999999999999998 9999987 68999
Q ss_pred eecCCCcc
Q psy2871 90 KRAVPRDE 97 (178)
Q Consensus 90 ~~~~~~~~ 97 (178)
.++.+...
T Consensus 97 ~~Ak~~~l 104 (124)
T 2e5i_A 97 EYARPTRL 104 (124)
T ss_dssp ECCSCSCC
T ss_pred EEecCCcc
Confidence 99987653
No 233
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=9.3e-17 Score=105.84 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=68.9
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|++. ++..+.|++|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345678999999999 99999999999999999999999988899999999999999999999997 7888888876
No 234
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=102.45 Aligned_cols=74 Identities=27% Similarity=0.498 Sum_probs=67.1
Q ss_pred CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
......++|||+|||. +++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3445678999999999 999999999999999999999988 689999999999999999999997 7788888875
No 235
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=7.7e-17 Score=107.96 Aligned_cols=75 Identities=32% Similarity=0.418 Sum_probs=69.1
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||+|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 445678999999999 99999999999999999999999988899999999999999999999997 7788888876
No 236
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=103.57 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=66.1
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCC---CCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKE---TGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~---~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.+.++|||+|||. +++++|+++|++||.|..+.+..+.. ++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 4567899999999 99999999999999999999998865 558899999999999999999997 7888888875
No 237
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=2.4e-16 Score=101.75 Aligned_cols=71 Identities=24% Similarity=0.484 Sum_probs=64.4
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
.....++|||+|||. +++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|.+|+.. ++..+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 335678999999999 9999999999999999999999987 689999999999999999999987 6667777
No 238
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.7e-17 Score=104.65 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=65.6
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccccC
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
....++|||+|||. +++++|+++|+.||.+ .+.++.+. ++.++|||||+|.+.++|.+|++.++..+.|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEE
Confidence 34567999999999 9999999999999954 99999997 79999999999999999999998788888888763
No 239
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=102.93 Aligned_cols=74 Identities=22% Similarity=0.420 Sum_probs=67.2
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCC-CCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET-GAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~-~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|+.|| |..+.++.+..+ +.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 86 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRI 86 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEE
Confidence 345678999999999 99999999999999 999999999876 899999999999999999999558888888876
No 240
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=2.7e-16 Score=104.70 Aligned_cols=81 Identities=14% Similarity=0.299 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccce-EEEEeCCHHHHHHHHhc-CCceecC--eEE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGF-GFITYSEAKMVDDAMSN-RPHNIDG--RVV 87 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~-~~~~~~g--~~i 87 (178)
.+...-.|||+|||+.+|+++|+++|++||.|.++++..+ .+|+ |||+|.+.++|..|++. ++..+.| +.|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 4455667889999999999999999999999999998764 2577 99999999999999999 9999998 899
Q ss_pred EEeecCCCcc
Q psy2871 88 ETKRAVPRDE 97 (178)
Q Consensus 88 ~v~~~~~~~~ 97 (178)
+|.++.+...
T Consensus 99 rI~~ak~~~l 108 (130)
T 3zzy_A 99 RIDFSKLTSL 108 (130)
T ss_dssp EEEECSCSSC
T ss_pred EEEecCCCce
Confidence 9999987653
No 241
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=105.31 Aligned_cols=73 Identities=25% Similarity=0.515 Sum_probs=67.5
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.+.++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 80 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 4568999999999 99999999999999999999999988899999999999999999999986 7788888775
No 242
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=9.6e-18 Score=113.52 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=65.0
Q ss_pred ceEEEEeCCHHHHHHHHhcCCceecCeEEEEeecCCCcccCCCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEE
Q psy2871 59 GFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVN 137 (178)
Q Consensus 59 g~afV~f~~~~~a~~a~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~ 137 (178)
|+|+..|..++.+..++........|....-.. ............++|||+|||. +++++|+++|++|| +..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~----g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGS----GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCC----CCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 567777777777666665532223332221110 0011122334567899999999 99999999999999 77999
Q ss_pred eeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccccC
Q psy2871 138 MVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 138 i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
++.+.. +.++|||||+|++.++|++|++.++..+.|+.|+
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIE 116 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCC
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEE
Confidence 999876 8999999999999999999996688888888774
No 243
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=101.35 Aligned_cols=72 Identities=22% Similarity=0.446 Sum_probs=65.7
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCC-ceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGA-KRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~-~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..++|||+|||. +++++|+++|++||.|..+.+..+..++. ++|+|||+|.+.++|.+|+.. ++..+.|++|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 77 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEE
Confidence 457899999999 99999999999999999999999876655 889999999999999999997 8888888876
No 244
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=102.79 Aligned_cols=75 Identities=31% Similarity=0.533 Sum_probs=68.0
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeC-CCCCCceeEEEEEECCHHHHHHHHHh--cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTN-KETGAKRGFAFIEFNDYDVVDKIVLS--KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~-~~~~~~~g~afv~F~~~~~a~~a~~~--~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+..+ ..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 345678999999999 999999999999999999999998 67889999999999999999999987 4778888775
No 245
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.6e-17 Score=105.67 Aligned_cols=73 Identities=21% Similarity=0.414 Sum_probs=67.7
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
...++|||+|||. +++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 96 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI 96 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEE
Confidence 3568999999999 999999999999999999999999888999999999999999999999558889998876
No 246
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=1.6e-16 Score=102.86 Aligned_cols=74 Identities=23% Similarity=0.298 Sum_probs=68.2
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 345678999999999 9999999999999999999999998 789999999999999999999997 8888888876
No 247
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=105.07 Aligned_cols=72 Identities=28% Similarity=0.500 Sum_probs=66.3
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...++|||+|||. +++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|.+|++. ++..+.|++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4567999999999 9999999999999999999999988 789999999999999999999987 7778888765
No 248
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.2e-17 Score=106.40 Aligned_cols=73 Identities=27% Similarity=0.574 Sum_probs=68.4
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
...++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 98 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVV 98 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEE
Confidence 4568999999999 999999999999999999999999888999999999999999999999998888988876
No 249
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=110.28 Aligned_cols=72 Identities=17% Similarity=0.322 Sum_probs=66.8
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccC--ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G--~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..++|||+|||. +++++|+++|+.|| .|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 457999999999 99999999999999 999999999998999999999999999999999999 7788888876
No 250
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=98.22 Aligned_cols=76 Identities=11% Similarity=0.211 Sum_probs=66.1
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHhhc-CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 14 ESLRK-VFIGGLDYRTTDES----LQAFFEQW-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 14 ~~~~~-l~v~nlp~~~t~~~----l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
.++.+ |||+|||.++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|.+|++. ++..+.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34555 99999999999988 55899999 599888 22 9999999999999999987 999999999
Q ss_pred EEEeecCCCcccC
Q psy2871 87 VETKRAVPRDEIG 99 (178)
Q Consensus 87 i~v~~~~~~~~~~ 99 (178)
|+|.++.......
T Consensus 76 i~v~~A~~~sd~~ 88 (96)
T 2diu_A 76 IIVSFTPKNRELC 88 (96)
T ss_dssp CEEESSCCSCCCC
T ss_pred EEEEecCCCccee
Confidence 9999998776543
No 251
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7e-17 Score=105.92 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=67.6
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCce-eEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTI-ESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v-~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|+.||.| ..+.++.+. ++.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEE
Confidence 45568999999999 9999999999999999 889999988 7899999999999999999999998889999876
No 252
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=9.9e-17 Score=103.73 Aligned_cols=75 Identities=23% Similarity=0.479 Sum_probs=66.8
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeec---ccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLL---LDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~---~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+.. ++..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999 99999999999999999999999988899999999999999999999987 55565 66654
No 253
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1.8e-16 Score=105.41 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=67.9
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 345678999999999 9999999999999999999999988 789999999999999999999996 8888888875
No 254
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.9e-17 Score=103.54 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=60.2
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-c--Ceecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-K--ITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~--~~~~~g~~v 177 (178)
..+.++|||+|||+ +++++|+++|++||+|.++.++++ +|||||+|++.++|..|++. + +..+.|++|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 45668999999999 999999999999999999999864 57999999999999999996 2 367888876
No 255
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=1.6e-16 Score=110.45 Aligned_cols=81 Identities=25% Similarity=0.480 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecC--eEEE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVE 88 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~i~ 88 (178)
.....++|||+|||+++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|++. ++..+.| ++|.
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 345678999999999999999999999999999999999988899999999999999999999997 8999988 8999
Q ss_pred Eeec
Q psy2871 89 TKRA 92 (178)
Q Consensus 89 v~~~ 92 (178)
|.++
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8875
No 256
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=3.1e-16 Score=98.77 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=65.7
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 45678999999999 999999999999999999999874 678999999999999999999997 8888888876
No 257
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=5.8e-17 Score=104.13 Aligned_cols=72 Identities=26% Similarity=0.636 Sum_probs=66.3
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|+. ++..++|+++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l 78 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKL 78 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEE
Confidence 34568999999999 9999999999999999999999998 89999999999999999999999 7778888765
No 258
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=1.2e-16 Score=102.45 Aligned_cols=73 Identities=23% Similarity=0.344 Sum_probs=65.8
Q ss_pred CcccEEEEeCCCc-------ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccc-c
Q psy2871 105 ATVKKMFVGGLKD-------QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLD-R 175 (178)
Q Consensus 105 ~~~~~l~v~~l~~-------~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g-~ 175 (178)
...++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+.. ++..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467899999985 57889999999999999999999998899999999999999999999987 7888888 6
Q ss_pred cc
Q psy2871 176 RV 177 (178)
Q Consensus 176 ~v 177 (178)
+|
T Consensus 84 ~l 85 (100)
T 3ns6_A 84 RL 85 (100)
T ss_dssp BC
T ss_pred EE
Confidence 54
No 259
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=5.1e-17 Score=103.02 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=66.4
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.+.++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 4568999999999 99999999999999999888888888899999999999999999999986 8888888876
No 260
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=6.2e-17 Score=103.71 Aligned_cols=74 Identities=23% Similarity=0.430 Sum_probs=64.7
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCC-CCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNK-ETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|+.|| |..+.+..+. .++.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l 90 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRI 90 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEE
Confidence 345678999999999 99999999999999 9999999987 58999999999999999999999558888999876
No 261
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=1.2e-16 Score=105.45 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=67.3
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCc---eeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGT---IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~---v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|+.||. |..+.++.+.. +.++|||||+|.+.++|.+|++.++..+.|+.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 34567899999999 999999999999999 89999999876 899999999999999999999988889999876
No 262
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=1.5e-16 Score=115.26 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~ 93 (178)
..++|||+|||+++|+++|+++|+.||.|..++++.+. +.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999885 34789999999999999999987 9999999999999997
Q ss_pred CCcc
Q psy2871 94 PRDE 97 (178)
Q Consensus 94 ~~~~ 97 (178)
++..
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 7543
No 263
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=1.6e-16 Score=105.61 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=65.8
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCcee--EEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccccC
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIE--SVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~--~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
...++|||+|||. +++++|+++|+.| .|. .+.++.+.. +.++|||||+|.+.++|.+|+..++..+.|+.|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 4567899999999 9999999999999 676 899999886 8999999999999999999999988899998874
No 264
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=102.19 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=67.5
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 345568999999999 99999999999999999888888888899999999999999999999977 6678888876
No 265
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=103.53 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=65.4
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccccC
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
...+|||+|||. +++++|+++|+.| .|..+.++.+.. +.++|+|||+|.+.++|.+|+..++..+.|+.|+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVE 86 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 357999999999 9999999999999 899999999875 8999999999999999999998788999998763
No 266
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.5e-16 Score=99.70 Aligned_cols=73 Identities=27% Similarity=0.512 Sum_probs=65.5
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+..+.. .++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 445678999999999 99999999999999999999998864 3889999999999999999987 7888888876
No 267
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=3.7e-16 Score=105.81 Aligned_cols=75 Identities=28% Similarity=0.511 Sum_probs=68.7
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++. ++..+.|++|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 445678999999999 99999999999999999999999988899999999999999999999987 7778888875
No 268
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=9.3e-17 Score=106.50 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=65.8
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCce----eEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccccC
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTI----ESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v----~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
....+|||+|||+ +|+++|+++|++||.| ..+.++.+. ++.++|+|||+|.+.++|.+|+..++..+.|+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3457899999999 9999999999999975 688998884 78999999999999999999999988999998775
No 269
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-16 Score=106.12 Aligned_cols=74 Identities=26% Similarity=0.535 Sum_probs=68.3
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34568999999999 99999999999999999999999988899999999999999999999997 7888888765
No 270
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=2.1e-16 Score=110.50 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec---CeEE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID---GRVV 87 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~~i 87 (178)
.....++|||+|||+++|+++|+++|++||.|.++++..+. ++.++|||||.|.+.++|.+|++. ++..+. +++|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 44578899999999999999999999999999999999987 688999999999999999999988 776665 3899
Q ss_pred EEeecC
Q psy2871 88 ETKRAV 93 (178)
Q Consensus 88 ~v~~~~ 93 (178)
.|.++.
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 998863
No 271
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.1e-16 Score=99.86 Aligned_cols=73 Identities=22% Similarity=0.398 Sum_probs=65.2
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+..+.. .++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 445678999999999 99999999999999999999998854 3689999999999999999996 8888888875
No 272
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=2.7e-16 Score=104.76 Aligned_cols=74 Identities=19% Similarity=0.495 Sum_probs=68.1
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|++. ++..+.|++|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34567999999999 99999999999999999999999988899999999999999999999986 8888888875
No 273
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=103.39 Aligned_cols=75 Identities=24% Similarity=0.410 Sum_probs=68.3
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCcee--------EEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeec
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIE--------SVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLL 172 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~--------~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~ 172 (178)
.....++|||+|||. +++++|+++|++||.|. .+.+..+..++.++|||||+|.+.++|.+|+.. ++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999 99999999999999999 699999988899999999999999999999997 88888
Q ss_pred ccccc
Q psy2871 173 LDRRV 177 (178)
Q Consensus 173 ~g~~v 177 (178)
.|++|
T Consensus 91 ~g~~l 95 (113)
T 2cpe_A 91 QGSKL 95 (113)
T ss_dssp TTEEC
T ss_pred CCCEE
Confidence 88875
No 274
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1.7e-16 Score=105.47 Aligned_cols=72 Identities=28% Similarity=0.548 Sum_probs=67.1
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
..++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 107 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTI 107 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 468999999999 999999999999999999999999888999999999999999999999558888888876
No 275
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=1.1e-16 Score=108.04 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=67.0
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCc---eeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccccC
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGT---IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~---v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
...++|||+|||. +|+++|+++|+.||. |..+.++.+.. +.++|||||+|.+.++|.+|++.++..+.|++|+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~ 118 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIE 118 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEE
Confidence 4567899999999 999999999999999 89999999987 9999999999999999999999888888888763
No 276
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=2.9e-16 Score=108.87 Aligned_cols=80 Identities=25% Similarity=0.475 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE--EEE
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV--VET 89 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~--i~v 89 (178)
....++|||+|||+++++++|+++|++||.|..+++..+..++.++|||||+|.+.++|.+|++. ++..+.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 34568999999999999999999999999999999999988899999999999999999999997 899999964 777
Q ss_pred eec
Q psy2871 90 KRA 92 (178)
Q Consensus 90 ~~~ 92 (178)
.++
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 277
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=1.8e-16 Score=104.14 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE-----
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV----- 86 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~----- 86 (178)
....++|||+|||+++++++|+++|++||+|..+.+..+ |||||+|.+.++|.+|++. ++..+.|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 356789999999999999999999999999999999765 8999999999999999997 999999987
Q ss_pred EEEeecCCCc
Q psy2871 87 VETKRAVPRD 96 (178)
Q Consensus 87 i~v~~~~~~~ 96 (178)
++|..+.+..
T Consensus 86 i~v~~~~~~~ 95 (115)
T 3beg_B 86 IRVKVDGPRS 95 (115)
T ss_dssp CEEEECC---
T ss_pred EEeccCCCCC
Confidence 7777665543
No 278
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=101.05 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=59.7
Q ss_pred CCCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCe---ecccc
Q psy2871 100 KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKIT---LLLDR 175 (178)
Q Consensus 100 ~~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~---~~~g~ 175 (178)
+.....++++|||+|||. +++++|+++|++||+|.++.+++. +|+|||+|++.++|.+|+...+. .+.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 334456788999999999 999999999999999999998753 46999999999999999988332 37787
Q ss_pred cc
Q psy2871 176 RV 177 (178)
Q Consensus 176 ~v 177 (178)
+|
T Consensus 88 ~i 89 (100)
T 3r27_A 88 PA 89 (100)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 279
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=99.46 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=63.8
Q ss_pred CCcccEEEEeCCCc-ccHHHHH----HHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLR----EYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~----~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....+|||+|||. +++++|+ ++|++||.|..+.++.+..+ +|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34567899999999 9999999 99999999999999988754 78999999999999999997 8888888875
No 280
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.1e-16 Score=101.25 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=66.6
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 34568999999999 9999999999999999999999987 488999999999999999999996 8888888875
No 281
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=103.46 Aligned_cols=74 Identities=24% Similarity=0.306 Sum_probs=67.2
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCc---eeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccccccC
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGT---IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~---v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ve 178 (178)
.....+|||+|||. +++++|+++|+.||. |..+.++.+.. +.++|+|||+|.+.++|.+|+..++..+.|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 35567899999999 999999999999988 89999999887 9999999999999999999999888888888764
No 282
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=5.7e-16 Score=106.95 Aligned_cols=74 Identities=26% Similarity=0.347 Sum_probs=68.5
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.++|||+|||. +++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+.. ++..|.|++|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34678999999999 99999999999999999999999988899999999999999999999997 7788888775
No 283
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=6e-16 Score=97.30 Aligned_cols=72 Identities=18% Similarity=0.370 Sum_probs=66.0
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|+.| .|..+.++.+ .++.++|+|||+|.+.++|.+|+..++..+.|++|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i 79 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYI 79 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEE
Confidence 34568999999999 9999999999999 9999999998 67899999999999999999999988888888876
No 284
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=106.57 Aligned_cols=74 Identities=15% Similarity=0.273 Sum_probs=66.2
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
.....+|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..++..+.|++|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 96 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 96 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 34568999999999 999999999999999988666666668999999999999999999999988888888876
No 285
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=107.00 Aligned_cols=74 Identities=16% Similarity=0.360 Sum_probs=66.8
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeE--EEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCe----eccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES--VNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KIT----LLLD 174 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~--~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~----~~~g 174 (178)
.....++|||+|||. +++++|+++|++||.|.. ++++.+..++.++|||||+|.+. +|.+|+.. ++. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 345678999999999 999999999999999976 99999998999999999999999 99999998 555 7888
Q ss_pred ccc
Q psy2871 175 RRV 177 (178)
Q Consensus 175 ~~v 177 (178)
++|
T Consensus 98 r~l 100 (131)
T 2m2b_A 98 KTI 100 (131)
T ss_dssp CCC
T ss_pred EEE
Confidence 876
No 286
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=7.9e-17 Score=101.16 Aligned_cols=69 Identities=28% Similarity=0.598 Sum_probs=64.6
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
++|||+|||. +++++|+++|++||.|..+.+..+..++.++|||||+|.+.+ |.+|+.. ++..+.|++|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 5899999999 999999999999999999999999888999999999999999 9999998 7778888876
No 287
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-16 Score=100.59 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=63.3
Q ss_pred CcccEEEEeCCCc-c------cHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccc-
Q psy2871 105 ATVKKMFVGGLKD-Q------EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDR- 175 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~- 175 (178)
...++|||+|||. + ++++|+++|++||.|..+.++ ..++.++|||||+|.+.++|.+|+.. ++..+.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 4467999999999 8 789999999999999999988 35688999999999999999999997 78888887
Q ss_pred cc
Q psy2871 176 RV 177 (178)
Q Consensus 176 ~v 177 (178)
+|
T Consensus 91 ~l 92 (105)
T 2nlw_A 91 TF 92 (105)
T ss_dssp EE
T ss_pred eE
Confidence 54
No 288
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.9e-16 Score=98.60 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=60.9
Q ss_pred CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh---cCeecccccc
Q psy2871 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS---KITLLLDRRV 177 (178)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~---~~~~~~g~~v 177 (178)
....+.++|||+|||. +++++|+++|++||.|..+.+..+ +|||||+|++.++|..|+.. ++..+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 3446778999999999 999999999999999999998764 57999999999999999986 3456888875
No 289
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=6.1e-16 Score=108.34 Aligned_cols=80 Identities=21% Similarity=0.361 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
......++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678899999999999999999999999988766 44788999999999999999999997 999999999999
Q ss_pred eecCCC
Q psy2871 90 KRAVPR 95 (178)
Q Consensus 90 ~~~~~~ 95 (178)
.++.++
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 999765
No 290
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=4.3e-16 Score=96.11 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=60.2
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.+..|+|+||+. +|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|++|++. ++..+.|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 456799999999 99999999999999999999854 578999999999999999999 8888888876
No 291
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.8e-16 Score=100.97 Aligned_cols=73 Identities=16% Similarity=0.345 Sum_probs=65.5
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCc-eeEEEee-eCCCCCCceeEEEEEECCHHHHHHHHHhc---Ceecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMV-TNKETGAKRGFAFIEFNDYDVVDKIVLSK---ITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~-v~~~~i~-~~~~~~~~~g~afv~F~~~~~a~~a~~~~---~~~~~g~~v 177 (178)
.+.++|||+|||. +++++|+++|++||. |..+.++ .+..++.++|||||+|.+.++|.+|+..+ +..+.|++|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 4567999999999 999999999999998 9999998 77777899999999999999999999984 367888765
No 292
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=103.21 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=60.8
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcC---eecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKI---TLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~---~~~~g~~v 177 (178)
...++++|||+|||. +++++|+++|++||.|..+.++.+ +|||||+|++.++|.+|++.++ ..+.|++|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 345678999999999 999999999999999999999875 5799999999999999998743 46888876
No 293
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-15 Score=99.17 Aligned_cols=72 Identities=14% Similarity=0.377 Sum_probs=64.4
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDR 175 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~ 175 (178)
.....++|||+|||. +++++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|.+|+.. ++..+.|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 345668999999999 9999999999999999999999998 789999999999999999999997 66667443
No 294
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=1.7e-15 Score=97.72 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhhcCceeEEEEeeCCCC-CCccceEEEEeCCHHHHHHHHhc-CCceecCe
Q psy2871 13 PESLRKVFIGGLDY-----RTTDESLQAFFEQWGEIVDVVVMKDPIT-KRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (178)
Q Consensus 13 ~~~~~~l~v~nlp~-----~~t~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (178)
..++++|+|+|+.. +-++++|++.|++||.|.++++..++.+ +.++|+|||.|.+.++|.+|++. ++..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45688999999973 2378999999999999999999998643 68899999999999999999998 99999999
Q ss_pred EEEEeecCCCc
Q psy2871 86 VVETKRAVPRD 96 (178)
Q Consensus 86 ~i~v~~~~~~~ 96 (178)
.|.|.++....
T Consensus 85 ~i~v~~a~~~~ 95 (105)
T 2pe8_A 85 VVKACFYNLDK 95 (105)
T ss_dssp ECEEEECCHHH
T ss_pred EEEEEEcCHHH
Confidence 99999986543
No 295
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-15 Score=98.44 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=63.4
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.+..+ +.++|||||+|.+.++|.+|++. ++..+.|++|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 345678999999999 999999999999999999999654 45789999999999999999976 7888888875
No 296
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=101.51 Aligned_cols=75 Identities=27% Similarity=0.491 Sum_probs=66.4
Q ss_pred CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 101 PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 101 ~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.......++|||+|||. +++++|+++|++||.|..+.+..+. +.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 33445678999999999 9999999999999999999998875 34889999999999999999997 8888888876
No 297
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=7.4e-16 Score=102.02 Aligned_cols=79 Identities=19% Similarity=0.356 Sum_probs=70.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v 89 (178)
..+...++|||+|+ ++++++|+++|++||+|.++.+. .++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456889999996 69999999999999999999985 4679999999999999999987 999999999999
Q ss_pred eecCCCcc
Q psy2871 90 KRAVPRDE 97 (178)
Q Consensus 90 ~~~~~~~~ 97 (178)
.++.+...
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987654
No 298
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=1.7e-15 Score=108.07 Aligned_cols=109 Identities=15% Similarity=0.289 Sum_probs=81.3
Q ss_pred CHHHHHHHHhcC---CceecCeEEEEeecCCCcccCCC----CCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEe
Q psy2871 67 EAKMVDDAMSNR---PHNIDGRVVETKRAVPRDEIGKP----EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNM 138 (178)
Q Consensus 67 ~~~~a~~a~~~~---~~~~~g~~i~v~~~~~~~~~~~~----~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i 138 (178)
+.+.+..|+... ...+.+....|......+. ... ......++|||+|||. +++++|+.+|++||.|..+.+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~-p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPL-PEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCC-CCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCC-cccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE
Confidence 556677777663 3334443333433311110 000 0123468999999999 999999999999999999999
Q ss_pred eeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 139 VTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 139 ~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
+++.. +.++|+|||+|++.++|.+|+...+..+.|++|
T Consensus 142 ~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l 179 (193)
T 2voo_A 142 RRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 179 (193)
T ss_dssp EECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEEC
T ss_pred EECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence 98864 889999999999999999999998889999876
No 299
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=98.33 Aligned_cols=68 Identities=26% Similarity=0.325 Sum_probs=59.1
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhc---Ceecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSK---ITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~---~~~~~g~~v 177 (178)
..+.++|||+|||. +++++|+++|++||.|..+.+.++ +|+|||+|++.++|.+|+..+ ...+.|++|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 45678999999999 999999999999999999998753 579999999999999999863 235888875
No 300
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=101.30 Aligned_cols=70 Identities=26% Similarity=0.456 Sum_probs=60.6
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCC---CCceeEEEEEECCHHHHHHHHHhcCeeccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET---GAKRGFAFIEFNDYDVVDKIVLSKITLLLDRR 176 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~---~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~ 176 (178)
...++|||+|||. +++++|+++|++||.|. +.++.+..+ +.++|||||+|.+.++|.+|++.+ ..++|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcE
Confidence 4567899999999 99999999999999999 788777665 689999999999999999999986 2356653
No 301
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=1.1e-15 Score=111.87 Aligned_cols=72 Identities=19% Similarity=0.345 Sum_probs=66.3
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccC--ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G--~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..++|||+||+. +++++|+++|+.|| .|..+.|+.+..++.++|||||+|.+.++|.+||+. ++..|.|++|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 467899999999 99999999999999 999999999988999999999999999999999997 7788888876
No 302
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=99.40 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=65.0
Q ss_pred CcccEEEEeCCCc-ccHHHHH---HHhhccCceeEEEeeeCCCC---CCceeEEEEEECCHHHHHHHHHh-cCeeccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLR---EYFSQFGTIESVNMVTNKET---GAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRR 176 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~---~~f~~~G~v~~~~i~~~~~~---~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~ 176 (178)
...++|||+|||. +++++|+ ++|++||+|..+.+..+..+ +.++|||||+|.+.++|.+|++. ++..+.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 3457899999999 9999999 99999999999999888653 35669999999999999999998 888898887
Q ss_pred c
Q psy2871 177 V 177 (178)
Q Consensus 177 v 177 (178)
|
T Consensus 93 l 93 (111)
T 2cpi_A 93 L 93 (111)
T ss_dssp E
T ss_pred E
Confidence 6
No 303
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=94.04 Aligned_cols=66 Identities=18% Similarity=0.494 Sum_probs=59.6
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.++|||+|||. +++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 45678999999999 9999999999999999999987 46999999999999999987 7778888876
No 304
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=2e-16 Score=101.43 Aligned_cols=73 Identities=18% Similarity=0.334 Sum_probs=64.1
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++.++..+.|++|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 87 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 87 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEE
Confidence 34567999999999 999999999999999888 66666667889999999999999999999977778888765
No 305
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.5e-15 Score=94.37 Aligned_cols=69 Identities=26% Similarity=0.496 Sum_probs=60.5
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecc--cccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLL--DRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~--g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+.. ++..+. |++|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 345668999999999 999999999999999999998753 56999999999999999997 777888 6665
No 306
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=95.74 Aligned_cols=71 Identities=24% Similarity=0.420 Sum_probs=61.9
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.| .++.+ .++.++|||||+|.+.++|++|+.. ++..+.|++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 445678999999999 9999999999999987 45555 5688999999999999999999996 7788888875
No 307
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=3.4e-15 Score=97.82 Aligned_cols=71 Identities=14% Similarity=0.277 Sum_probs=63.2
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.++|||+|||. +++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34567999999999 999999999999999999999865 34588999999999999999996 8888888875
No 308
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=99.85 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCcccEEEEeCCCc-ccHHHHH----HHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLR----EYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~----~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.++|||+|||. +++++|+ ++|++||.|..+.+.. ++.++|||||+|.+.++|..|+.. ++..+.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 34568999999999 9998866 6999999999988754 467899999999999999999987 7778888765
No 309
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-14 Score=94.61 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=71.9
Q ss_pred CCCCCCCCeEEEcCCCCCCC-----------HHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-
Q psy2871 10 CTEPESLRKVFIGGLDYRTT-----------DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN- 77 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp~~~t-----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~- 77 (178)
...+..+++|+|+||..... +++|+++|++||+|.++.+ .+. .++|||||.|.+.++|.+|++.
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 34567799999999944332 5899999999999999966 443 3789999999999999999987
Q ss_pred CCceecCeEEEEeecCCCcccC
Q psy2871 78 RPHNIDGRVVETKRAVPRDEIG 99 (178)
Q Consensus 78 ~~~~~~g~~i~v~~~~~~~~~~ 99 (178)
++..+.|+.|.|.++.+.....
T Consensus 85 ng~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp TTCEETTEECEEEECCSCCCSS
T ss_pred CCCEECCcEEEEEEeCCCCCcc
Confidence 8999999999999998765443
No 310
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=1.3e-15 Score=111.45 Aligned_cols=80 Identities=16% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCC---------CHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCce
Q psy2871 12 EPESLRKVFIGGLDYRT---------TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHN 81 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~---------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~ 81 (178)
.....++|||+|||..+ ++++|+++|++||+|.+|+++. ++|||||.|.+.++|+.|++. ++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35568999999999998 7999999999999999999986 369999999999999999988 8888
Q ss_pred e------------cCeEEEEeecCCCcc
Q psy2871 82 I------------DGRVVETKRAVPRDE 97 (178)
Q Consensus 82 ~------------~g~~i~v~~~~~~~~ 97 (178)
+ .|+.|.|.|+.....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 8 899999999986543
No 311
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=5.8e-15 Score=91.51 Aligned_cols=69 Identities=32% Similarity=0.572 Sum_probs=61.1
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh--cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS--KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~--~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+.. ++..+.|++|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 345668999999999 999999999999999999999863 57999999999999999996 6678888876
No 312
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.1e-16 Score=102.25 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=61.3
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 345678999999999 99999999999999984332222222678899999999999999999987 7778888775
No 313
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.8e-15 Score=95.06 Aligned_cols=69 Identities=20% Similarity=0.454 Sum_probs=61.3
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 345678999999999 999999999999999999998754 57999999999999999977 7788888875
No 314
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.7e-15 Score=99.58 Aligned_cols=70 Identities=11% Similarity=0.233 Sum_probs=61.7
Q ss_pred cEEEEeCC----Cc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECC----H-HH---HHHHHH--h-cCee
Q psy2871 108 KKMFVGGL----KD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND----Y-DV---VDKIVL--S-KITL 171 (178)
Q Consensus 108 ~~l~v~~l----~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~----~-~~---a~~a~~--~-~~~~ 171 (178)
..|+|+|| |+ +++++|+.+|+.||+|.++.++.|+.++.++|||||+|.+ + ++ |.+|+. . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 99 9999999999999999999999999999999999999996 3 32 788887 4 7888
Q ss_pred cccccc
Q psy2871 172 LLDRRV 177 (178)
Q Consensus 172 ~~g~~v 177 (178)
+.|+++
T Consensus 83 I~Gr~i 88 (136)
T 2j8a_A 83 IMGFKF 88 (136)
T ss_dssp ETTEEE
T ss_pred ecCcEE
Confidence 888765
No 315
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=2.2e-15 Score=98.09 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=60.4
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccC-ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+|||+|||. +++++|+++|++|| .|..+.+... .++|||||+|.+.++|.+|++. ++..+.|++|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 456899999999 99999999999999 8999988543 4678999999999999999987 8888889876
No 316
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.5e-15 Score=95.22 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=57.9
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
...++|||+|||. +++++|+++|++||.|..+.++.+ |||||+|.+.++|++|++. ++..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 4567999999999 999999999999999999999876 6999999999999999997 7777888
No 317
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=5e-15 Score=94.84 Aligned_cols=67 Identities=19% Similarity=0.403 Sum_probs=60.2
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...++|||+|||. +++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4467999999999 9999999999999999999987 3457999999999999999987 8888888876
No 318
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.4e-15 Score=96.02 Aligned_cols=67 Identities=21% Similarity=0.469 Sum_probs=60.8
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...++|||+|||. +++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 91 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 91 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 4568999999999 999999999999999999999875 57999999999999999977 8888888875
No 319
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=4.3e-15 Score=96.40 Aligned_cols=69 Identities=25% Similarity=0.501 Sum_probs=60.4
Q ss_pred CCCCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 101 PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 101 ~~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.......++|||+|||. +++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 33446678999999999 9999999999999999999987 57999999999999999987 8888888875
No 320
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.3e-14 Score=90.19 Aligned_cols=82 Identities=11% Similarity=0.187 Sum_probs=68.3
Q ss_pred CCCCCCCCeEEEcCCC-------CCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCcee
Q psy2871 10 CTEPESLRKVFIGGLD-------YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNI 82 (178)
Q Consensus 10 ~~~~~~~~~l~v~nlp-------~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~ 82 (178)
++.....++|.|.-.+ +++++++|+++|++||+|.++++. ++++|||||+|.+.++|..|++. ...+
T Consensus 4 ~~~~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~ 77 (100)
T 2d9o_A 4 GSSGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGL 77 (100)
T ss_dssp CCCCCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBC
T ss_pred CcCCCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCC
Confidence 3345557788888765 458999999999999999999987 36789999999999999999998 3446
Q ss_pred cCeEEEEeecCCCcc
Q psy2871 83 DGRVVETKRAVPRDE 97 (178)
Q Consensus 83 ~g~~i~v~~~~~~~~ 97 (178)
.|++|+|.|+.+...
T Consensus 78 ~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 78 VDNPLKISWLEGQPQ 92 (100)
T ss_dssp SSSBCEEECSSCCCC
T ss_pred CCCeEEEEEccCCCC
Confidence 799999999876654
No 321
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=6.8e-15 Score=103.59 Aligned_cols=73 Identities=25% Similarity=0.312 Sum_probs=66.7
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 34568999999999 9999999999999999999999988 789999999999999999999997 7778888765
No 322
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=5.6e-15 Score=92.54 Aligned_cols=68 Identities=25% Similarity=0.455 Sum_probs=53.9
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
..+..+|||+|||. +++++|+++|++||.|..+.++.+ ++|||||+|++.++|.++.. ....+.|++|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v 76 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISV 76 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEE
Confidence 45668999999999 999999999999999999999874 67899999999999985432 2333446554
No 323
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=2e-15 Score=95.97 Aligned_cols=71 Identities=21% Similarity=0.401 Sum_probs=62.5
Q ss_pred CCcccEEEEeCCCc-ccHHHHH----HHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLR----EYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~----~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..++++|||+|||. +++++|+ ++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 35678999999999 9999999 9999999999999874 356778999999999999999987 8888888765
No 324
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=96.02 Aligned_cols=65 Identities=31% Similarity=0.530 Sum_probs=59.2
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
++|||+|||. +++++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 3799999999 999999999999999999999876 678999999999999999997 7778888765
No 325
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-15 Score=94.23 Aligned_cols=70 Identities=24% Similarity=0.331 Sum_probs=60.9
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 345678999999999 9999999999999988766 23578899999999999999999997 7778888765
No 326
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=91.17 Aligned_cols=68 Identities=29% Similarity=0.567 Sum_probs=58.5
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
...++|||+|||. +++++|+++|+.||.|..+ ..+..++. ||||+|.+.++|.+|+..++..+.|++|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l 74 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRL 74 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEE
Confidence 3457999999999 9999999999999999987 44444443 9999999999999999977788888876
No 327
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=1.4e-14 Score=108.84 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec-CeEEEE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVET 89 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~i~v 89 (178)
.....++|||+|||+++++++|+++|+.||.|.++++..++ +|||||+|.+.++|.+|++. ++..+. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 44567899999999999999999999999999999998653 58999999999999999997 899999 999999
Q ss_pred eecC
Q psy2871 90 KRAV 93 (178)
Q Consensus 90 ~~~~ 93 (178)
.|+.
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9874
No 328
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=6.8e-15 Score=95.91 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=59.1
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..++|||+|||. +++++|+++|++||.|..+.++. ++|+|||+|.+.++|.+|+.. ++..+.|++|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 467999999999 99999999999999999999864 456999999999999999987 7778888765
No 329
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=92.75 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=59.5
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|++||.|. +.+..+ .++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34568999999999 99999999999999996 555543 5678999999999999999987 8888888875
No 330
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-16 Score=104.32 Aligned_cols=73 Identities=25% Similarity=0.427 Sum_probs=66.5
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeE--------EEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIES--------VNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~--------~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
.+.++|||+|||. +++++|+++|++||.|.. +.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 4567899999999 999999999999999998 88998888889999999999999999999997 7778888
Q ss_pred ccc
Q psy2871 175 RRV 177 (178)
Q Consensus 175 ~~v 177 (178)
++|
T Consensus 85 ~~l 87 (116)
T 2lcw_A 85 NPI 87 (116)
Confidence 765
No 331
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=90.91 Aligned_cols=67 Identities=18% Similarity=0.415 Sum_probs=59.9
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+.++ ||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 345678999999999 999999999999999999998743 899999999999999987 8888888875
No 332
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=1.2e-14 Score=90.41 Aligned_cols=68 Identities=18% Similarity=0.436 Sum_probs=60.3
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhcc----C-------ceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCee
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQF----G-------TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITL 171 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~----G-------~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~ 171 (178)
..+.++|||+|||. +++++|+++|++| | .|..+.+..+ +|||||+|.+.++|.+|+..++..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 34678999999999 9999999999999 8 8999998654 579999999999999999558888
Q ss_pred cccccc
Q psy2871 172 LLDRRV 177 (178)
Q Consensus 172 ~~g~~v 177 (178)
+.|++|
T Consensus 77 ~~g~~l 82 (87)
T 2hzc_A 77 FQGQSL 82 (87)
T ss_dssp ETTEEC
T ss_pred ECCeEE
Confidence 999876
No 333
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=92.68 Aligned_cols=72 Identities=28% Similarity=0.479 Sum_probs=63.1
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 445678999999999 99999999999884 566777777889999999999999999999986 8888888875
No 334
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=103.93 Aligned_cols=77 Identities=10% Similarity=0.233 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec-CeEEEEe
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVETK 90 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~i~v~ 90 (178)
.++++|||+|||+++++++|+++|++|| .|..++++++ .+|+|||+|.+.++|.+|++. ++..+. |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999764 268999999999999999997 899999 9999999
Q ss_pred ecCCC
Q psy2871 91 RAVPR 95 (178)
Q Consensus 91 ~~~~~ 95 (178)
++.+.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98753
No 335
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.57 E-value=1.2e-14 Score=93.38 Aligned_cols=66 Identities=33% Similarity=0.461 Sum_probs=59.2
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.++|||+|||. +++++|+++|++||.|..+.+.+ +||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 34568999999999 99999999999999999999863 4899999999999999997 8888888875
No 336
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=90.77 Aligned_cols=67 Identities=18% Similarity=0.384 Sum_probs=59.8
Q ss_pred CCCcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.....++|||+|||. +++++|+++|++||.|..+.+.++ ||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 345668899999999 999999999999999999998743 899999999999999997 7888888875
No 337
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.3e-14 Score=90.66 Aligned_cols=68 Identities=21% Similarity=0.400 Sum_probs=59.8
Q ss_pred CCCCcccEEEEeCCCc-ccHHHHHHHhhcc--CceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 102 EANATVKKMFVGGLKD-QEEDDLREYFSQF--GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~t~~~l~~~f~~~--G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
....+.++|||+|||. +++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3445678999999999 9999999999999 899998864 45999999999999999996 8888888875
No 338
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=6.4e-15 Score=96.62 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=57.7
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRR 176 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~ 176 (178)
...+|||+|||. +++++|+++|++||+|..+.++.+ |||||+|++.++|.+|++. ++..+.|++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 457899999999 999999999999999999999765 6999999999999999997 788888876
No 339
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=7.3e-15 Score=94.12 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=58.6
Q ss_pred CCcccEEEEeCCCc--ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcC---eecccccc
Q psy2871 104 NATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKI---TLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~--~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~---~~~~g~~v 177 (178)
..++++|||+|||. +++++|+++|++||.|.++.+++++ |+|||+|++.++|..|+..++ ..+.|++|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 34678999999986 8899999999999999999997653 689999999999999998733 35888875
No 340
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=9.7e-15 Score=105.14 Aligned_cols=77 Identities=9% Similarity=0.104 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCce--eEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCe----E
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEI--VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR----V 86 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i--~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~----~ 86 (178)
.++++|||+|||+++|+++|+++|++||.| .+++++.+. +.++|+|||+|.+.++|..|+.. ++..+.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 346789999999999999999999999999 899998875 44569999999999999999998 88888775 5
Q ss_pred EEEeec
Q psy2871 87 VETKRA 92 (178)
Q Consensus 87 i~v~~~ 92 (178)
+.|.++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666553
No 341
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=2.9e-14 Score=90.70 Aligned_cols=67 Identities=22% Similarity=0.491 Sum_probs=58.6
Q ss_pred CCCcccEEEEeCCCc--ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~--~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345678999999993 9999999999999999999983 57999999999999999997 7778888875
No 342
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=94.70 Aligned_cols=64 Identities=13% Similarity=0.327 Sum_probs=54.8
Q ss_pred CCCcccEEEE--eCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeec
Q psy2871 103 ANATVKKMFV--GGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLL 172 (178)
Q Consensus 103 ~~~~~~~l~v--~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~ 172 (178)
...+.++||| +||+. +++++|+++|++||.|..+.++. .+|||||+|.+.++|.+|+.. ++..+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3355678999 77999 99999999999999999998863 267999999999999999998 55544
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=5.4e-14 Score=90.66 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=63.8
Q ss_pred CCcccEEEEeCCCc------ccHHHHHHHhhccCceeEEEeeeCCC-CCCceeEEEEEECCHHHHHHHHHh-cCeecccc
Q psy2871 104 NATVKKMFVGGLKD------QEEDDLREYFSQFGTIESVNMVTNKE-TGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDR 175 (178)
Q Consensus 104 ~~~~~~l~v~~l~~------~t~~~l~~~f~~~G~v~~~~i~~~~~-~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~ 175 (178)
..++++|+|.|+.. -++++|++.|++||+|.++.++.++. ++.++|+|||+|.+.++|.+|+.. ++..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999953 26899999999999999999998754 367899999999999999999988 88888888
Q ss_pred cc
Q psy2871 176 RV 177 (178)
Q Consensus 176 ~v 177 (178)
.|
T Consensus 85 ~i 86 (105)
T 2pe8_A 85 VV 86 (105)
T ss_dssp EC
T ss_pred EE
Confidence 75
No 344
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=4e-14 Score=91.27 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=70.6
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhhcCceeEEEEeeCCCC--CCccceEEEEeCCHHHHHHHHhc-CCc
Q psy2871 14 ESLRKVFIGGL--DYRTT--------DESLQAFFEQWGEIVDVVVMKDPIT--KRSRGFGFITYSEAKMVDDAMSN-RPH 80 (178)
Q Consensus 14 ~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~i~~~~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~-~~~ 80 (178)
.+++.|.+.|+ |.++. +++|++.|++||+|.++++.++..+ +.++|+|||+|.+.++|.+|++. ++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46889999998 44444 3699999999999999999887744 36899999999999999999998 999
Q ss_pred eecCeEEEEeecCCC
Q psy2871 81 NIDGRVVETKRAVPR 95 (178)
Q Consensus 81 ~~~g~~i~v~~~~~~ 95 (178)
.+.|+.|.|.+....
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987543
No 345
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=3.3e-14 Score=103.94 Aligned_cols=77 Identities=10% Similarity=0.233 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec-CeEEEEe
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVETK 90 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~i~v~ 90 (178)
.+.++|||+|||+++++++|+++|++|| .|..++++.+ .+|||||+|.+.++|.+|++. ++..+. |+.|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4478999999999999999999999999 9999999763 368999999999999999997 899999 9999999
Q ss_pred ecCCC
Q psy2871 91 RAVPR 95 (178)
Q Consensus 91 ~~~~~ 95 (178)
++.+.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98763
No 346
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=93.37 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=58.8
Q ss_pred CCcccEEEEeCCCc--ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhc---Ceecccccc
Q psy2871 104 NATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSK---ITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~--~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~---~~~~~g~~v 177 (178)
..++++|||+|||. +++++|+++|++||+|..+.+.+ ++|||||+|++.++|..|+..+ +..+.|++|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 45678999999986 79999999999999999999964 3579999999999999999863 345888875
No 347
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.4e-15 Score=92.32 Aligned_cols=67 Identities=30% Similarity=0.498 Sum_probs=55.9
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
...++|||+|||. +++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+.. ...+.|.+|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l 70 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISV 70 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEE
Confidence 3568999999999 999999999999999999999764 678999999999999876443 444566554
No 348
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=3.1e-14 Score=106.10 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc--CCceec---CeEEEE
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNID---GRVVET 89 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~--~~~~~~---g~~i~v 89 (178)
+.++|||+|||+.+|+++|+++|+.||.|..+.+..+. +|.++|||||.|.+.++|.+|+.. ++..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 46799999999999999999999999999999999995 889999999999999999999998 455554 899999
Q ss_pred eecCCCcc
Q psy2871 90 KRAVPRDE 97 (178)
Q Consensus 90 ~~~~~~~~ 97 (178)
.++.+...
T Consensus 174 ~~~~~~~~ 181 (261)
T 3sde_A 174 EPMEQFDD 181 (261)
T ss_dssp EECCCEES
T ss_pred eeccccCc
Confidence 99876543
No 349
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.8e-14 Score=90.54 Aligned_cols=67 Identities=22% Similarity=0.476 Sum_probs=57.8
Q ss_pred CCCcccEEEEeCCCc--ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 103 ANATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~--~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...+.++|||+|||. +++++|+++|++||.|..+.+. +|||||+|.+.++|..|+.. ++..+.|++|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKL 75 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTB
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 345678999999993 9999999999999999999984 56999999999999999997 7778888876
No 350
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=2.1e-14 Score=93.37 Aligned_cols=84 Identities=17% Similarity=0.450 Sum_probs=65.8
Q ss_pred cCeEEEEeecCCCcccCCCCCCCcccEEEEeCCCc--ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHH
Q psy2871 83 DGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 160 (178)
Q Consensus 83 ~g~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~--~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~ 160 (178)
.|..+.+..+..... .......++|||+|||. +++++|+++|++||.|..+.+ ++|||||+|.+.++
T Consensus 6 ~g~~~~~~~s~~~~~---~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~ 74 (110)
T 1wf1_A 6 SGMSLKLQASNVTNK---NDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERH 74 (110)
T ss_dssp CSCCCCCCCCCSCCS---CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHH
T ss_pred CCcccccccCCCCCC---CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHH
Confidence 345555554443222 22334457999999986 799999999999999999998 45799999999999
Q ss_pred HHHHHHh-cCeecccccc
Q psy2871 161 VDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 161 a~~a~~~-~~~~~~g~~v 177 (178)
|.+|+.. ++..+.|++|
T Consensus 75 A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 75 ARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp HHHHHHHHTTCEETTEEC
T ss_pred HHHHHHHcCCCEECCeEE
Confidence 9999977 8888888876
No 351
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.8e-14 Score=88.35 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=58.5
Q ss_pred CCcccEEEEeCCCcccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.++|||+|+ .+++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 12 ~~~~~~l~V~n~-~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 12 PRKGNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCSEEEEECS-SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEcCC-CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 345689999995 69999999999999999999984 4567999999999999999977 7788888765
No 352
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=2e-14 Score=89.77 Aligned_cols=65 Identities=6% Similarity=0.172 Sum_probs=58.6
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..++|||+|||. +++++|+++|++| .|..+.+. .++|||||+|.+.++|.+|+.. ++..+.|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 457899999999 9999999999999 99999884 5678999999999999999997 8888888875
No 353
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-14 Score=91.75 Aligned_cols=67 Identities=21% Similarity=0.431 Sum_probs=57.1
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCc-eeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cC-eecccccc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KI-TLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~-v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~-~~~~g~~v 177 (178)
....++|||+|||. +++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+.. ++ ..+.|++|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 34567899999999 999999999999999 6655552 357999999999999999987 66 78888875
No 354
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.1e-14 Score=89.21 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=59.7
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEE-eeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVN-MVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~-i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
...++|||+|||. +++++|+++|++||.|..++ ++.+..++ .|||+|.+.++|.+|+.. ++..+.|++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 4467899999999 99999999999999999994 77765433 399999999999999986 8888888875
No 355
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=8.1e-15 Score=99.70 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=61.2
Q ss_pred CCcccEEEEeCCCc-ccHHHHHHHhhccCceeEE--------EeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecc
Q psy2871 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESV--------NMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLL 173 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~--------~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~ 173 (178)
..+.++|||+|||. +++++|+.+|+.||.|..+ .+. .++.++|||||+|.+.++|.+|+.. ++..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 45668999999999 9999999999999998763 332 2578899999999999999999997 888888
Q ss_pred cccc
Q psy2871 174 DRRV 177 (178)
Q Consensus 174 g~~v 177 (178)
|++|
T Consensus 119 g~~l 122 (143)
T 3egn_A 119 GKPM 122 (143)
T ss_dssp TEEC
T ss_pred CcEE
Confidence 8875
No 356
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=1.1e-14 Score=93.82 Aligned_cols=71 Identities=15% Similarity=0.346 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEE
Q psy2871 21 IGGLDYRTTDESLQAFF------------EQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (178)
Q Consensus 21 v~nlp~~~t~~~l~~~f------------~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i 87 (178)
+.|||..+++++|++.| ++||+|.++++..+. ++.++|||||.|.+.++|.+|++. ++..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777888777666 999999999999887 478999999999999999999998 9999999999
Q ss_pred EEeec
Q psy2871 88 ETKRA 92 (178)
Q Consensus 88 ~v~~~ 92 (178)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 357
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=8.9e-14 Score=91.40 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHHhhcCceeEEEEeeCCC----CCCccceEEEEeCCHHHHHHHHhc-CCceecC
Q psy2871 15 SLRKVFIGGLDY--RT---TDESLQAFFEQWGEIVDVVVMKDPI----TKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (178)
Q Consensus 15 ~~~~l~v~nlp~--~~---t~~~l~~~f~~~G~i~~~~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (178)
++++|+++|+-. ++ -+++|++.|++||+|.++++..+.. ++.++|++||+|.+.++|.+|++. ++..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 688999999842 22 3679999999999999999998864 356789999999999999999998 9999999
Q ss_pred eEEEEeecCC
Q psy2871 85 RVVETKRAVP 94 (178)
Q Consensus 85 ~~i~v~~~~~ 94 (178)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 358
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.50 E-value=1.3e-13 Score=95.00 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=57.3
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
....+|||+||+. +++++|+++|++||+|..+.+.... ++|+|||+|.+.++|..|++. ++..|.|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 3456789999999 9999999999999999999997542 568999999999999999998 6667755
No 359
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.45 E-value=4.1e-13 Score=89.33 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=55.9
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeE-EEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGF-AFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~-afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
+...|+|+||+. +|+++|+++|++||+|.++.+.... +|+ |||+|.+.++|..|+.. ++..+.|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 345678999999 9999999999999999999987642 466 99999999999999998 7777776
No 360
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4e-13 Score=83.65 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=53.6
Q ss_pred CcccE-EEEeCCCc-ccHHH----HHHHhhcc-CceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeeccccc
Q psy2871 105 ATVKK-MFVGGLKD-QEEDD----LREYFSQF-GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRR 176 (178)
Q Consensus 105 ~~~~~-l~v~~l~~-~t~~~----l~~~f~~~-G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~ 176 (178)
+++.+ |||+|||. +++++ |+++|++| |+|.++. + |+|||+|.+.++|.+|++. ++..+.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------G---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------T---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------c---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34455 89999999 99887 55899999 4999882 2 7999999999999999987 888888987
Q ss_pred c
Q psy2871 177 V 177 (178)
Q Consensus 177 v 177 (178)
|
T Consensus 76 i 76 (96)
T 2diu_A 76 I 76 (96)
T ss_dssp C
T ss_pred E
Confidence 6
No 361
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=3.1e-13 Score=89.33 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=58.6
Q ss_pred CCcccEEEEeCCCcccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 104 NATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 104 ~~~~~~l~v~~l~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+.++|||+|+ .+++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|+.. ++..+.|++|
T Consensus 36 ~~~~~~lfVgnl-~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 36 PRKGNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp CCCCCEEEEECS-SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCEEEEcCC-CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 346789999994 49999999999999999999985 4567999999999999999977 8888888775
No 362
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=1e-12 Score=86.87 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=54.2
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeE-EEEEECCHHHHHHHHHh-cCeecccc
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGF-AFIEFNDYDVVDKIVLS-KITLLLDR 175 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~-afv~F~~~~~a~~a~~~-~~~~~~g~ 175 (178)
..|||+||+. +++++|+++|++||.|..+.+... .|+ |||+|.+.++|..|+.. ++..|.|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~ 90 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAG 90 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 3467999999 999999999999999999999653 265 99999999999999998 77778773
No 363
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=7.8e-13 Score=101.62 Aligned_cols=77 Identities=12% Similarity=0.210 Sum_probs=64.5
Q ss_pred CCCCCCCeEEEcC--CCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceec---C
Q psy2871 11 TEPESLRKVFIGG--LDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID---G 84 (178)
Q Consensus 11 ~~~~~~~~l~v~n--lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g 84 (178)
....++++|||+| |+..+|+++|+++|++||+|.++.+.. ++|||||+|.+.++|++|++. ++..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3467788999999 688999999999999999999987753 469999999999999999998 777773 3
Q ss_pred e--EEEEeecC
Q psy2871 85 R--VVETKRAV 93 (178)
Q Consensus 85 ~--~i~v~~~~ 93 (178)
+ .+.+.+..
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 56666654
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=5.5e-13 Score=85.91 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=61.5
Q ss_pred CcccEEEEeCC--Cc-cc--------HHHHHHHhhccCceeEEEeeeCCCC--CCceeEEEEEECCHHHHHHHHHh-cCe
Q psy2871 105 ATVKKMFVGGL--KD-QE--------EDDLREYFSQFGTIESVNMVTNKET--GAKRGFAFIEFNDYDVVDKIVLS-KIT 170 (178)
Q Consensus 105 ~~~~~l~v~~l--~~-~t--------~~~l~~~f~~~G~v~~~~i~~~~~~--~~~~g~afv~F~~~~~a~~a~~~-~~~ 170 (178)
.+++.|.+.|+ |. +. +++|++.|++||+|.++.|+.+..+ +.++|+|||+|.+.++|.+|+.. ++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 33 32 3799999999999999999988654 36789999999999999999988 888
Q ss_pred ecccccc
Q psy2871 171 LLLDRRV 177 (178)
Q Consensus 171 ~~~g~~v 177 (178)
.+.|++|
T Consensus 83 ~f~GR~i 89 (105)
T 3v4m_A 83 KFANRVV 89 (105)
T ss_dssp EETTEEC
T ss_pred EeCCCEE
Confidence 8888876
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=7.3e-13 Score=96.97 Aligned_cols=63 Identities=22% Similarity=0.391 Sum_probs=56.3
Q ss_pred CCcccEEEEeCCCc-c---------cHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeec
Q psy2871 104 NATVKKMFVGGLKD-Q---------EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLL 172 (178)
Q Consensus 104 ~~~~~~l~v~~l~~-~---------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~ 172 (178)
....++|||+||+. + ++++|+.+|++||+|..+.++. ++|||||+|.+.++|..|++. ++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 45678999999998 7 7999999999999999999985 367999999999999999988 66666
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=1.8e-12 Score=85.15 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=61.5
Q ss_pred cccEEEEeCCCc---c---cHHHHHHHhhccCceeEEEeeeCCC----CCCceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 106 TVKKMFVGGLKD---Q---EEDDLREYFSQFGTIESVNMVTNKE----TGAKRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 106 ~~~~l~v~~l~~---~---t~~~l~~~f~~~G~v~~~~i~~~~~----~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
++++|++.|+-. + .+++|++.|++||+|.++.|+.+.. ++.++|+|||+|.+.++|.+|+.. ++..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999842 3 3689999999999999999998854 356789999999999999999998 8888888
Q ss_pred ccc
Q psy2871 175 RRV 177 (178)
Q Consensus 175 ~~v 177 (178)
+.|
T Consensus 99 R~i 101 (118)
T 3ue2_A 99 RKV 101 (118)
T ss_dssp EEC
T ss_pred cEE
Confidence 876
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=4.5e-13 Score=86.20 Aligned_cols=65 Identities=17% Similarity=0.402 Sum_probs=54.9
Q ss_pred EeCCCc-ccHHHHHHHh------------hccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 112 VGGLKD-QEEDDLREYF------------SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 112 v~~l~~-~t~~~l~~~f------------~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
+.+|+. +++++|++.| ++||+|..+.+..+.. +.++|+|||+|.+.++|.+|+.. ++..+.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 456666 7777766666 9999999999998764 78899999999999999999987 8888889876
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.9e-12 Score=82.81 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=58.6
Q ss_pred CCCcccEEEEeCCCc-c-----------cHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cC
Q psy2871 103 ANATVKKMFVGGLKD-Q-----------EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KI 169 (178)
Q Consensus 103 ~~~~~~~l~v~~l~~-~-----------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~ 169 (178)
...++++|+|.|+.. . ++++|+++|++||.|..+.+ .+. .++|+|||+|.+.++|.+|+.. ++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345678999999954 2 25899999999999999976 443 3789999999999999999987 77
Q ss_pred eecccccc
Q psy2871 170 TLLLDRRV 177 (178)
Q Consensus 170 ~~~~g~~v 177 (178)
..+.|++|
T Consensus 87 ~~~~gr~l 94 (112)
T 2dit_A 87 RWFGGRQI 94 (112)
T ss_dssp CEETTEEC
T ss_pred CEECCcEE
Confidence 78888875
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=1.4e-11 Score=80.26 Aligned_cols=77 Identities=9% Similarity=0.138 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCcee
Q psy2871 14 ESLRKVFIGGLDYRTT----------DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~ 82 (178)
.+++.|.+.|+=..-. +++|++.|++||.|.++.+.++. .+|+|||.|.+.++|.+|++. +|..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4578899998754332 34889999999999999986653 589999999999999999998 99999
Q ss_pred cCeEEEEeecCC
Q psy2871 83 DGRVVETKRAVP 94 (178)
Q Consensus 83 ~g~~i~v~~~~~ 94 (178)
.|+.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999998754
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=4.9e-11 Score=75.95 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=46.2
Q ss_pred ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 118 QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 118 ~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
+++++|+++|++||+|..+.++ +.++|||||+|++.++|..|+.... .+.|++|
T Consensus 29 ~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~~l 82 (100)
T 2d9o_A 29 YSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDNPL 82 (100)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSSBC
T ss_pred CCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCCeE
Confidence 8999999999999999999987 3678899999999999999999833 3455543
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=1e-11 Score=95.39 Aligned_cols=66 Identities=8% Similarity=0.210 Sum_probs=55.6
Q ss_pred CCCCCcccEEEEeCC--Cc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeec
Q psy2871 101 PEANATVKKMFVGGL--KD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLL 172 (178)
Q Consensus 101 ~~~~~~~~~l~v~~l--~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~ 172 (178)
...+.++.+|||+|+ +. +++++|+++|++||+|..+.+.. ++|||||+|.+.++|++|++. ++..+
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 344567789999995 56 99999999999999999988753 468999999999999999999 44444
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=7.1e-11 Score=76.98 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=56.6
Q ss_pred CcccEEEEeCCCc-c----------cHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeec
Q psy2871 105 ATVKKMFVGGLKD-Q----------EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLL 172 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~----------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~ 172 (178)
.+++.|.+.|+-. . .+++|++.|++||.|.++.+.++. ++|+|||+|.+.++|.+|+.. ++..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3566788888843 1 236899999999999999986653 478999999999999999988 88888
Q ss_pred ccccc
Q psy2871 173 LDRRV 177 (178)
Q Consensus 173 ~g~~v 177 (178)
.|+.|
T Consensus 81 ~GR~i 85 (114)
T 3s6e_A 81 AGKMI 85 (114)
T ss_dssp TTEEC
T ss_pred CCEEE
Confidence 88876
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=4.4e-10 Score=69.33 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=61.9
Q ss_pred CeEEEcCCC----CCCCH----HHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeEEE
Q psy2871 17 RKVFIGGLD----YRTTD----ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (178)
Q Consensus 17 ~~l~v~nlp----~~~t~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~i~ 88 (178)
-+|+|.-.| ..+-+ .+|.+.|++||+|..+++..++ +||+|.+.++|.+|++.++..+.|+.|+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 367777766 23444 5899999999999999998864 8999999999999999999999999999
Q ss_pred EeecCCCcc
Q psy2871 89 TKRAVPRDE 97 (178)
Q Consensus 89 v~~~~~~~~ 97 (178)
|+.+.+...
T Consensus 80 V~lkt~dW~ 88 (91)
T 2dnr_A 80 IALKSPSGP 88 (91)
T ss_dssp EEECCCSSC
T ss_pred EEeCCCCcc
Confidence 999887653
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=3.4e-10 Score=74.09 Aligned_cols=80 Identities=19% Similarity=0.121 Sum_probs=67.3
Q ss_pred CCCCCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCC-HHHHHHHHhc---CCceec
Q psy2871 9 KCTEPESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE-AKMVDDAMSN---RPHNID 83 (178)
Q Consensus 9 ~~~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~-~~~a~~a~~~---~~~~~~ 83 (178)
.+..-.....|+|+||+++ +++++|+++|++||+|..|++..+. ..|||.|.+ ..+|..|++. .+..|.
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 4556677889999999999 9999999999999999999998865 369999999 7888888887 478888
Q ss_pred CeEEEEeecCC
Q psy2871 84 GRVVETKRAVP 94 (178)
Q Consensus 84 g~~i~v~~~~~ 94 (178)
|..+.+.....
T Consensus 85 g~~~~~evL~G 95 (121)
T 1owx_A 85 NKEVTWEVLEG 95 (121)
T ss_dssp SSSEEEEECCH
T ss_pred CcEEEEEECCC
Confidence 87777765443
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=8.6e-10 Score=72.17 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=55.4
Q ss_pred CcccEEEEeCCCc--ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECC-HHHHHHHHHhc---Ceeccccc
Q psy2871 105 ATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND-YDVVDKIVLSK---ITLLLDRR 176 (178)
Q Consensus 105 ~~~~~l~v~~l~~--~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~-~~~a~~a~~~~---~~~~~g~~ 176 (178)
.+...|+|+|++. +++++|+++|+.||+|.++.+..+.. .|||+|.+ ..+|..|+... +..++|..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4567899999976 89999999999999999999988764 49999999 88999999873 55666643
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2e-09 Score=66.70 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=60.4
Q ss_pred CCeEEEcCCCCC-----CCH----HHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeE
Q psy2871 16 LRKVFIGGLDYR-----TTD----ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (178)
Q Consensus 16 ~~~l~v~nlp~~-----~t~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (178)
.-+|+|.-++++ +-+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++.++..+.|+.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 347888888743 333 5788999999999999999874 99999999999999999999999999
Q ss_pred EEEeecCC
Q psy2871 87 VETKRAVP 94 (178)
Q Consensus 87 i~v~~~~~ 94 (178)
|+|....+
T Consensus 87 L~V~~k~~ 94 (95)
T 1ufw_A 87 VKISGPSS 94 (95)
T ss_dssp EEEECCCC
T ss_pred EEEeccCC
Confidence 99987643
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=6.2e-09 Score=64.17 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=53.4
Q ss_pred CcccEEEEeCCC----c-ccH----HHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccc
Q psy2871 105 ATVKKMFVGGLK----D-QEE----DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDR 175 (178)
Q Consensus 105 ~~~~~l~v~~l~----~-~t~----~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~ 175 (178)
++..+++|...+ . +-+ .+|.+.|.+||+|..+++..+. +||+|.+.++|.+|++.++..++|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 344567776655 2 323 6799999999999999998864 9999999999999999999999998
Q ss_pred cc
Q psy2871 176 RV 177 (178)
Q Consensus 176 ~v 177 (178)
++
T Consensus 77 ~L 78 (91)
T 2dnr_A 77 TI 78 (91)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.82 E-value=7.7e-09 Score=74.95 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=58.5
Q ss_pred CHHHHHHHHhhcCceeEEEEeeCCCC----CCccceEEEEeCCHHHHHHHHhc-CCceecCeEEEEeecCC
Q psy2871 29 TDESLQAFFEQWGEIVDVVVMKDPIT----KRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (178)
Q Consensus 29 t~~~l~~~f~~~G~i~~~~~~~~~~~----~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~v~~~~~ 94 (178)
.+++|++.|++||.|.++.+..+..+ ++++|++||+|.+.++|.+|++. +|..+.|++|.+.....
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45789999999999999999865543 48999999999999999999999 99999999999988753
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.80 E-value=1.4e-08 Score=73.50 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=51.9
Q ss_pred ccHHHHHHHhhccCceeEEEeeeCCC----CCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 118 QEEDDLREYFSQFGTIESVNMVTNKE----TGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 118 ~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..+++|++.|++||.|.++.+..+.. ++.++|++||+|.+.++|.+|+.. ++..+.|+.|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i 205 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKV 205 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEE
Confidence 34679999999999999999986543 448899999999999999999999 7778888876
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.5e-07 Score=59.56 Aligned_cols=73 Identities=12% Similarity=0.223 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc-----CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeE
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQW-----GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (178)
.++.|+|-+-|||-.+++..|+.+.+++ |.+..+.+.++. +-|+|+|.+...|.+|.-. +|..+.|+.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3457899999999999999999999999 999999999987 7799999999999998866 999999999
Q ss_pred EEEee
Q psy2871 87 VETKR 91 (178)
Q Consensus 87 i~v~~ 91 (178)
|++..
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99864
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.6e-08 Score=62.72 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=54.7
Q ss_pred CcccEEEEeCCCc------ccH----HHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeeccc
Q psy2871 105 ATVKKMFVGGLKD------QEE----DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLD 174 (178)
Q Consensus 105 ~~~~~l~v~~l~~------~t~----~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g 174 (178)
++..+++|..++. +-+ .+|.+.|..||+|..+++..++ +||+|.+.++|.+|++.++..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 5566888887752 222 5699999999999999998875 999999999999999989999999
Q ss_pred ccc
Q psy2871 175 RRV 177 (178)
Q Consensus 175 ~~v 177 (178)
+.+
T Consensus 85 r~L 87 (95)
T 1ufw_A 85 RAV 87 (95)
T ss_dssp EEE
T ss_pred eEE
Confidence 875
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=4.7e-07 Score=56.79 Aligned_cols=88 Identities=22% Similarity=0.360 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhh-c----CceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeE
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQ-W----GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~----G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (178)
.....++|.|.|||+.++++.|.-+|+. . |+|.+++... +-|+|.|.+.+.|++.|+.....+++.+
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeE
Confidence 3445789999999999999999999986 2 7888887754 4799999999999999999788999999
Q ss_pred EEEeecCCCcccCCCCCCCcccEEEEeCCCc
Q psy2871 87 VETKRAVPRDEIGKPEANATVKKMFVGGLKD 117 (178)
Q Consensus 87 i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~ 117 (178)
|.|.+..+... .+|++.+|+.
T Consensus 76 LsV~P~~~~~~----------~r~ll~gl~~ 96 (104)
T 2dhx_A 76 LSLRPAPPRAP----------ARLLLQGLPP 96 (104)
T ss_dssp CEEEECCCCCC----------CCCCCCSCCC
T ss_pred EEEEcCCCCCc----------ceEeeecCCC
Confidence 99988665432 4567777765
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=3.9e-07 Score=57.67 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=58.8
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhcc-----CceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQF-----GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~-----G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
..++|-+-+||+ +++..|+.+.+.+ |.+.++.+.++.. =|+|+|++..+|.+|... ++..|.|+++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 357899999999 9999999999999 9999999988863 399999999999999877 8889988875
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.19 E-value=1.5e-05 Score=50.14 Aligned_cols=77 Identities=10% Similarity=0.048 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCC-CH----HHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc-CCceecCeEEE
Q psy2871 15 SLRKVFIGGLDYRT-TD----ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (178)
Q Consensus 15 ~~~~l~v~nlp~~~-t~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~i~ 88 (178)
-..+|+|.||++++ .. ++++++|..|+++....+.+.- +=..|.|.+.++|.+|... ++..+.|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35689999999986 32 4678999999998887766532 4579999999999999998 89999999999
Q ss_pred EeecCCCcc
Q psy2871 89 TKRAVPRDE 97 (178)
Q Consensus 89 v~~~~~~~~ 97 (178)
|.++.+...
T Consensus 78 ~YFgq~~~~ 86 (104)
T 1wey_A 78 LYFAQTLHI 86 (104)
T ss_dssp EECCCCSSC
T ss_pred EEecCCCCC
Confidence 999886554
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.18 E-value=1.6e-05 Score=51.42 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=53.9
Q ss_pred CcccEEEEeCCCcccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccc
Q psy2871 105 ATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDR 175 (178)
Q Consensus 105 ~~~~~l~v~~l~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~ 175 (178)
...+-|.|.|.|.-....+...|++||+|....... ...+..|+|.+..+|++||..++..+.|.
T Consensus 22 ~~~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~ 86 (119)
T 1wwh_A 22 LDDTWVTVFGFPQASASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGES 86 (119)
T ss_dssp GGGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCC
Confidence 345789999999977788899999999999887621 22389999999999999999988888753
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.17 E-value=1.1e-05 Score=50.08 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=47.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc
Q psy2871 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 13 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 77 (178)
+.-.+.+++ ++|+.+...||.++|++||.| .|+.+.|. .|||.|.+++.|..|+..
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 333556777 999999999999999999965 57777774 899999999999999885
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.09 E-value=3.5e-05 Score=49.81 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=62.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecC-eEEEE
Q psy2871 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDG-RVVET 89 (178)
Q Consensus 11 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g-~~i~v 89 (178)
.+....+-|.|-+.|+.. ...|...|++||.|.+.... ....+-.|.|.+..+|++||..++..+.| ..|-|
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 91 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEE
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEE
Confidence 345567889999999996 67888999999999987762 23469999999999999999999999985 67888
Q ss_pred eecCC
Q psy2871 90 KRAVP 94 (178)
Q Consensus 90 ~~~~~ 94 (178)
.+...
T Consensus 92 ~p~~d 96 (119)
T 1wwh_A 92 KPCID 96 (119)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 87643
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=7.8e-05 Score=46.73 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=54.3
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhc-c----CceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHhcCeecccccc
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQ-F----GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRV 177 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~-~----G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~~~~~~~g~~v 177 (178)
....+|.|.|+|. +.++.|.-+|+. - |+|..+.... +-|+|+|.+.+.|++.|+...+.|+|.++
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 3456899999998 999999999997 2 5688887754 14999999999999999998888888765
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.96 E-value=1.5e-05 Score=49.49 Aligned_cols=52 Identities=15% Similarity=0.336 Sum_probs=45.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 77 (178)
+.+++ ++|+.+...||.++|++||. ..|..+.|. .|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 34566 99999999999999999995 467777774 999999999999999985
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.82 E-value=0.00016 Score=44.65 Aligned_cols=67 Identities=15% Similarity=0.048 Sum_probs=52.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCC--CccceEEEEeCCHHHHHHHHhc-CCceec
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK--RSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (178)
..|-|++|||.+|++++.+.++.++.+.......-+... ....-|||.|.+.+++....+. +|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 468899999999999999999998887766665544322 3445699999999999888887 666654
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.62 E-value=0.00039 Score=42.83 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=51.6
Q ss_pred cEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCC--CceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETG--AKRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 108 ~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~--~~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
.+|.|++||. +|++++.+.++.+..+........+.+. ....-|+|.|++.+++..-... ++..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4789999999 9999999999999888777766554322 2233599999999998888877 6555544
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.46 E-value=0.00021 Score=46.86 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=51.1
Q ss_pred cEEEEeCCCcccHHHHHHHhhccCceeE-EEeeeCC------------CCC-CceeEEEEEECCHHHHHHHHHhcCeecc
Q psy2871 108 KKMFVGGLKDQEEDDLREYFSQFGTIES-VNMVTNK------------ETG-AKRGFAFIEFNDYDVVDKIVLSKITLLL 173 (178)
Q Consensus 108 ~~l~v~~l~~~t~~~l~~~f~~~G~v~~-~~i~~~~------------~~~-~~~g~afv~F~~~~~a~~a~~~~~~~~~ 173 (178)
.-+.|-|.|......+.+.|++||.|.. ....... ... ...++..|+|.+..+|.+||..++..++
T Consensus 8 ~~VtVFGFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~ 87 (132)
T 3p3d_A 8 LAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFN 87 (132)
T ss_dssp CEEEEECCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEET
T ss_pred eEEEEEecCHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeC
Confidence 4578889998777888899999999866 2222100 000 1345889999999999999999999888
Q ss_pred cc
Q psy2871 174 DR 175 (178)
Q Consensus 174 g~ 175 (178)
|.
T Consensus 88 G~ 89 (132)
T 3p3d_A 88 GV 89 (132)
T ss_dssp TE
T ss_pred cE
Confidence 75
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.42 E-value=0.00025 Score=46.48 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=57.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeC-------------CCCC-CccceEEEEeCCHHHHHHHHhcCCce
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKD-------------PITK-RSRGFGFITYSEAKMVDDAMSNRPHN 81 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~-------------~~~~-~~~g~afV~f~~~~~a~~a~~~~~~~ 81 (178)
...|.|-+.|++.+ ..+.+.|++||.|..-.-..+ +-.. ....+-.|.|.+..+|.+||..++..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 45688889977665 566688999999865211110 0000 13578899999999999999999999
Q ss_pred ecCeEEEEeecCCC
Q psy2871 82 IDGRVVETKRAVPR 95 (178)
Q Consensus 82 ~~g~~i~v~~~~~~ 95 (178)
+.|..|-|.+....
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998888877543
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.28 E-value=0.0012 Score=40.96 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=41.9
Q ss_pred CcccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 105 ~~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
...+.+++ +.|. |...||.++|+.||.|. |.=+.|. .|||-|.+++.|..|+..
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 44567777 7777 99999999999999543 2222232 599999999999999885
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.20 E-value=0.00022 Score=56.75 Aligned_cols=58 Identities=10% Similarity=0.269 Sum_probs=44.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcC
Q psy2871 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNR 78 (178)
Q Consensus 15 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 78 (178)
..|.|+|. .|+.+++.+|.++|++||+|.++.+-.++ .-||.|+|.+.+++..++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 35789997 79999999999999999999999887654 269999999999999888763
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.08 E-value=0.00073 Score=41.99 Aligned_cols=70 Identities=10% Similarity=-0.024 Sum_probs=48.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCC--CCccceEEEEeCCHHHHHHHHhc-CCceec
Q psy2871 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT--KRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (178)
Q Consensus 14 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (178)
..+-.|-|+.|||.+|++++.+.++++-++.......-+.+ .....-|||.|.+.++.....+. ++..+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 34667999999999999999888877655432222221111 12334589999999999988887 666553
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.00 E-value=0.0018 Score=40.27 Aligned_cols=52 Identities=23% Similarity=0.391 Sum_probs=40.4
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
.+.+++ +.|. |...||.++|+.||.| .|.=+.+. .|||-|.+++.|..|+..
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 345666 7787 9999999999999943 33333332 599999999999999985
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.92 E-value=0.0021 Score=39.94 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=47.0
Q ss_pred ccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCC--ceeEEEEEECCHHHHHHHHHh-cCeeccc
Q psy2871 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGA--KRGFAFIEFNDYDVVDKIVLS-KITLLLD 174 (178)
Q Consensus 107 ~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~--~~g~afv~F~~~~~a~~a~~~-~~~~~~g 174 (178)
+-+|.|+.||. +|++++.+.++.+-++..........+.. .-.-|+|.|++.++...-... .+..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 45799999999 99999998888765554433333222211 122489999999999888877 5555544
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.89 E-value=0.00054 Score=54.55 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=42.2
Q ss_pred CcccEEEEeCCCcccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 105 ATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 105 ~~~~~l~v~~l~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
...++|+|...+..++.+|.++|++||+|.++....+. | .||.|+|.+.++++.++..
T Consensus 51 qa~rsv~v~~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 51 QAQRTVLIHCPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHTEEEEEECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred HhcceEEEEcCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 35689999853449999999999999999998876543 2 5999999999999988755
No 400
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.36 E-value=0.013 Score=36.70 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=51.0
Q ss_pred ccEEEEeCCCc-c-cH----HHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh-cCeecccccc
Q psy2871 107 VKKMFVGGLKD-Q-EE----DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS-KITLLLDRRV 177 (178)
Q Consensus 107 ~~~l~v~~l~~-~-t~----~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~-~~~~~~g~~v 177 (178)
.++|+|.+++. + .. +.++++|..|++......++.-. -..|.|.+.++|.+|-.. ++..++|+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCcee
Confidence 46799999976 3 32 57789999999887766665421 278999999999999988 8888888765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.34 E-value=0.16 Score=40.98 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=44.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 77 (178)
.+.++++ +|+.+...+|.++|+.||.+ +|+++.+ ..|||.|.+.+.|..++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHH
Confidence 4567776 99999999999999999964 5666655 3799999999999998886
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.07 E-value=1.9 Score=34.74 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=40.6
Q ss_pred cccEEEEeCCCc-ccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 106 ~~~~l~v~~l~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
..+.++++ .|. |...+|.+.|+.||.+ .+.-..+. .|||.|.+.++|..++..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHH
Confidence 35677776 666 9999999999999965 33322221 599999999999999877
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=54.41 E-value=37 Score=23.10 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=26.5
Q ss_pred ccHHHHHHHh--hccCceeEEEeeeCCCCCCceeEEEEEECCH
Q psy2871 118 QEEDDLREYF--SQFGTIESVNMVTNKETGAKRGFAFIEFNDY 158 (178)
Q Consensus 118 ~t~~~l~~~f--~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~ 158 (178)
.+.++|++.| ..|.++.-.. +... ..++|+|.|+|.+-
T Consensus 33 ~s~~~l~~~~~~~~F~p~kv~~-l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTRVRP-LWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSEEEE-EECS--SBEEEEEEEECCSS
T ss_pred CCHHHHHHHHHhcCCCCceeEe-cccC--CCCceeEEEEecCC
Confidence 3457889977 8998866444 4443 35778999999653
No 404
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=46.57 E-value=50 Score=20.50 Aligned_cols=47 Identities=6% Similarity=0.021 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHhh-cCc---eeEE-EEeeCCCCCCccceEEEEeCCHHHHHH
Q psy2871 26 YRTTDESLQAFFEQ-WGE---IVDV-VVMKDPITKRSRGFGFITYSEAKMVDD 73 (178)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~---i~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (178)
+..+..+|++-... |+. +.-+ .+......+.+.|||.| |.|.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 34577788877764 432 2233 33444456788889877 777776664
No 405
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=45.94 E-value=50 Score=20.27 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHhh-c---Cc-eeEEEEeeCCCCCCccceEEEEeCCHHHHHHH
Q psy2871 26 YRTTDESLQAFFEQ-W---GE-IVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74 (178)
Q Consensus 26 ~~~t~~~l~~~f~~-~---G~-i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a 74 (178)
+..+..+|++-+.. | .. |.-..+......+.+.|||.| |.|.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 55677888888774 4 22 333344444456778888877 6666666544
No 406
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=44.73 E-value=53 Score=20.21 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHhh-cC---c-eeEEEEeeCCCCCCccceEEEEeCCHHHHHH
Q psy2871 26 YRTTDESLQAFFEQ-WG---E-IVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73 (178)
Q Consensus 26 ~~~t~~~l~~~f~~-~G---~-i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (178)
+..+..+|++-+.. |+ . |.-..+......|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 55677888887764 42 2 333344445556788888877 666666554
No 407
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=34.41 E-value=97 Score=20.48 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHhh-cCc---eeEE-EEeeCCCCCCccceEEEEeCCHHHHHH
Q psy2871 26 YRTTDESLQAFFEQ-WGE---IVDV-VVMKDPITKRSRGFGFITYSEAKMVDD 73 (178)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~---i~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (178)
+..+..+|++-+.. |+. +..+ .+......+.+.|||.| |.+.+.|..
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 35677788888774 432 2222 33334445678888887 666666554
No 408
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=33.95 E-value=62 Score=19.26 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=21.6
Q ss_pred ceeEEEEeeCCCCCCccceEEEEeCC
Q psy2871 42 EIVDVVVMKDPITKRSRGFGFITYSE 67 (178)
Q Consensus 42 ~i~~~~~~~~~~~~~~~g~afV~f~~ 67 (178)
+|+++++.+-...++-++||-|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887776678899999999976
No 409
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.89 E-value=54 Score=23.83 Aligned_cols=33 Identities=12% Similarity=0.371 Sum_probs=26.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEee
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMK 50 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~ 50 (178)
.-+.|+|||..++..-|..++.. +.+..+.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 45789999999999999999987 6666665544
No 410
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=30.95 E-value=29 Score=14.97 Aligned_cols=14 Identities=14% Similarity=0.553 Sum_probs=10.5
Q ss_pred ccHHHHHHHhhccC
Q psy2871 118 QEEDDLREYFSQFG 131 (178)
Q Consensus 118 ~t~~~l~~~f~~~G 131 (178)
..-.+++.+|.++|
T Consensus 12 taikqvkklfkkwg 25 (26)
T 1ytr_A 12 TAIKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcC
Confidence 34567888898887
No 411
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=30.64 E-value=54 Score=19.47 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=23.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhc
Q psy2871 12 EPESLRKVFIGGLDYRTTDESLQAFFEQW 40 (178)
Q Consensus 12 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~ 40 (178)
.......+.+.+.|..++.++..+++..|
T Consensus 15 ~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 15 TLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp -CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred ccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 44445679999999999999999999887
No 412
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=29.87 E-value=76 Score=19.42 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.7
Q ss_pred ceeEEEEeeCCCCCCccceEEEEeCC
Q psy2871 42 EIVDVVVMKDPITKRSRGFGFITYSE 67 (178)
Q Consensus 42 ~i~~~~~~~~~~~~~~~g~afV~f~~ 67 (178)
+|.++++.+-...++-++||-|.|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788888877678899999999976
No 413
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.64 E-value=94 Score=18.63 Aligned_cols=54 Identities=11% Similarity=0.032 Sum_probs=42.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhc
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 77 (178)
..-|-|-|+|..+-..++.-.....|----|..+. |.|.|.|.++.+...|+..
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHH
Confidence 45677889999999998877777777654554432 6899999999999999986
No 414
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.95 E-value=82 Score=19.48 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=21.5
Q ss_pred ceeEEEEeeCCCCCCccceEEEEeCC
Q psy2871 42 EIVDVVVMKDPITKRSRGFGFITYSE 67 (178)
Q Consensus 42 ~i~~~~~~~~~~~~~~~g~afV~f~~ 67 (178)
+|.++++.+-...++-++||-|.|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 47788887776678899999999976
No 415
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=28.38 E-value=47 Score=18.67 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=7.8
Q ss_pred eEEEEEECCH
Q psy2871 149 GFAFIEFNDY 158 (178)
Q Consensus 149 g~afv~F~~~ 158 (178)
|.|+|+|++-
T Consensus 42 gtC~V~F~D~ 51 (66)
T 2eqj_A 42 QSCFIIFEDS 51 (66)
T ss_dssp TEEEEEETTT
T ss_pred cEEEEEEccC
Confidence 4699999874
No 416
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=27.89 E-value=1.3e+02 Score=19.56 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHhh-cCc----eeEEEEeeCCCCCCccceEEEEeCCHHHHHH
Q psy2871 27 RTTDESLQAFFEQ-WGE----IVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73 (178)
Q Consensus 27 ~~t~~~l~~~f~~-~G~----i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (178)
..+..+|++-+.. |+. |.-..+......+.+.|||.| |.+.+.+..
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4678899998874 532 222334444456778888887 677666654
No 417
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=27.73 E-value=47 Score=20.28 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHhh-cCc---eeEEE-EeeCCCCCCccceEEEEeCCHHHHHH
Q psy2871 26 YRTTDESLQAFFEQ-WGE---IVDVV-VMKDPITKRSRGFGFITYSEAKMVDD 73 (178)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~---i~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (178)
+..+..+|++-... |+. +.-+. +......+.+.|||.| |.|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 34577788777764 422 22221 2222234577788766 555555443
No 418
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.99 E-value=28 Score=19.60 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=7.4
Q ss_pred EEEEEECCH
Q psy2871 150 FAFIEFNDY 158 (178)
Q Consensus 150 ~afv~F~~~ 158 (178)
.|+|.|++.
T Consensus 39 ~ClV~FeD~ 47 (68)
T 2e5p_A 39 VCLVQFEDD 47 (68)
T ss_dssp EEEEEETTT
T ss_pred EEEEEEccC
Confidence 699999874
No 419
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=26.11 E-value=37 Score=24.84 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=26.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEee
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMK 50 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~ 50 (178)
....|+|||..++..-|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999998655666665554
No 420
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=25.64 E-value=30 Score=20.06 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=7.4
Q ss_pred EEEEEECCH
Q psy2871 150 FAFIEFNDY 158 (178)
Q Consensus 150 ~afv~F~~~ 158 (178)
.|+|+|++.
T Consensus 56 ~ClV~F~D~ 64 (79)
T 2m0o_A 56 VCLVQFEDD 64 (79)
T ss_dssp EEEEEETTS
T ss_pred EEEEEEcCC
Confidence 599999874
No 421
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=24.58 E-value=1.4e+02 Score=19.83 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=25.9
Q ss_pred CCHHHHHHHHhhcCcee---EEEEeeCCCCCCccceEEE
Q psy2871 28 TTDESLQAFFEQWGEIV---DVVVMKDPITKRSRGFGFI 63 (178)
Q Consensus 28 ~t~~~l~~~f~~~G~i~---~~~~~~~~~~~~~~g~afV 63 (178)
.|+++|+++-.+.|.+. .+.+..+..+|+.+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 58899999999988874 4555666436766666654
No 422
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=23.10 E-value=98 Score=16.64 Aligned_cols=58 Identities=9% Similarity=-0.067 Sum_probs=43.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCc
Q psy2871 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPH 80 (178)
Q Consensus 16 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 80 (178)
..++.|.++.-.-=...|...+.. ..|..+.+-.. .+-+.|.|.+.+....+++..|.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAGY 63 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcCC
Confidence 457889999888888899999999 88887776432 25677888766666777776554
No 423
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=22.03 E-value=37 Score=24.44 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=25.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEEEee
Q psy2871 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMK 50 (178)
Q Consensus 19 l~v~nlp~~~t~~~l~~~f~~~G~i~~~~~~~ 50 (178)
..|+|||..++...|..++...+.+..+.++.
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 37999999999999999998766666665554
No 424
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=21.67 E-value=82 Score=24.37 Aligned_cols=59 Identities=12% Similarity=0.289 Sum_probs=40.4
Q ss_pred EEEcCCCCCCC----HHHHHHHHhhcCceeEEEEeeCCCCCCccceEEEEeCCHHHHHHHHhcCCceecCeE
Q psy2871 19 VFIGGLDYRTT----DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (178)
Q Consensus 19 l~v~nlp~~~t----~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (178)
-+|||++.-.. ...+.+...+||+|..+++- +.-+|...+.+.++.++......+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIKKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTTTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 35888864332 24566667789999888763 2346777899999999987655555443
No 425
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=21.28 E-value=78 Score=24.09 Aligned_cols=23 Identities=0% Similarity=0.095 Sum_probs=19.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhh
Q psy2871 17 RKVFIGGLDYRTTDESLQAFFEQ 39 (178)
Q Consensus 17 ~~l~v~nlp~~~t~~~l~~~f~~ 39 (178)
.-..|+|||.+++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 34789999999999999888874
No 426
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=20.04 E-value=1.1e+02 Score=20.75 Aligned_cols=42 Identities=12% Similarity=0.313 Sum_probs=29.3
Q ss_pred CCcccHHHHHHHhhccCceeEEEeeeCCCCCCceeEEEEEECCHHHHHHHHHh
Q psy2871 115 LKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167 (178)
Q Consensus 115 l~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afv~F~~~~~a~~a~~~ 167 (178)
||....++|+.+|..|=... .| +...+-.|.+.+.|.+.+..
T Consensus 127 l~~~~l~~i~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~ 168 (173)
T 3d53_A 127 LCEMLKKRIVHFFEHYKDLE---------KG--KWVKVTGWGDKVKAETLIKE 168 (173)
T ss_dssp SCHHHHHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCcc---------CC--CcEEEccCcCHHHHHHHHHH
Confidence 44445588999999992221 12 22577889999999998876
Done!