RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2871
(178 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 113 bits (282), Expect = 1e-32
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQF 130
D AM+ RPH +DGRVVE KRAV R++ +P A+ TVKK+FVGG+K+ EE LR+YF Q+
Sbjct: 62 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 121
Query: 131 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
G IE + ++T++ +G KRGFAF+ F+D+D VDKIV+ K + E
Sbjct: 122 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE 169
Score = 68.1 bits (165), Expect = 3e-15
Identities = 27/98 (27%), Positives = 55/98 (56%)
Query: 1 MKPRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGF 60
R D + +++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF
Sbjct: 82 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGF 141
Query: 61 GFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEI 98
F+T+ + VD + + H ++G E ++A+ + E+
Sbjct: 142 AFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 179
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 85.9 bits (212), Expect = 5e-23
Identities = 55/88 (62%), Positives = 70/88 (79%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E E RK+FIGGL + TT+ESL+ ++EQWG++ D VVM+DP +KRSRGFGF+T+S V
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIG 99
D AM+ RPH+IDGRVVE KRAV R+E G
Sbjct: 76 DAAMAARPHSIDGRVVEPKRAVAREESG 103
Score = 53.5 bits (128), Expect = 1e-10
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 88 ETKRAVPRDEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGA 146
+T VP + K +K+F+GGL + E+ LR Y+ Q+G + ++ + +
Sbjct: 3 KTLETVPLER--KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 60
Query: 147 KRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
RGF F+ F+ VD + ++ + R VE
Sbjct: 61 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVE 92
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 85.1 bits (210), Expect = 7e-23
Identities = 56/82 (68%), Positives = 67/82 (81%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
EPE LRK+FIGGL + TTDESL++ FEQWG + D VVM+DP TKRSRGFGF+TY+ + V
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 72 DDAMSNRPHNIDGRVVETKRAV 93
D AM+ RPH +DGRVVE KRAV
Sbjct: 62 DAAMNARPHKVDGRVVEPKRAV 83
Score = 53.5 bits (128), Expect = 1e-10
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 107 VKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
++K+F+GGL + ++ LR +F Q+GT+ ++ + T RGF F+ + + VD +
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 65
Query: 166 LSKITLLLDRRVE 178
++ + R VE
Sbjct: 66 NARPHKVDGRVVE 78
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 77.7 bits (191), Expect = 3e-20
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+F+GGL T +E ++ +F +GE+ + + D T + RGF FIT+ E + V M
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 78 RPHNIDGRVVETKRA 92
+ HN+ E K A
Sbjct: 61 KYHNVGLSKCEIKVA 75
Score = 53.0 bits (127), Expect = 1e-10
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167
K+FVGGL D E+ +REYF FG +ES+ + + +T +RGF FI F + + V KI+
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 168 KITLLLDRRVE 178
K + + E
Sbjct: 61 KYHNVGLSKCE 71
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 76.2 bits (187), Expect = 2e-19
Identities = 34/75 (45%), Positives = 54/75 (72%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL ++TT E L+ +F Q+GE+ + +VM+DP+TKRSRGFGF+T+ + VD ++
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 78 RPHNIDGRVVETKRA 92
H +D + ++ K A
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 56.1 bits (135), Expect = 7e-12
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167
KMF+GGL ++ LREYF QFG ++ ++ + T RGF F+ F D VDK++
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 168 KITLLLDRRVE 178
L + ++
Sbjct: 62 SRHELDSKTID 72
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 75.0 bits (184), Expect = 4e-19
Identities = 35/75 (46%), Positives = 54/75 (72%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+FIGGL + TT + L+ +F ++GE+VD + DPIT RSRGFGF+ + E++ VD M
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 78 RPHNIDGRVVETKRA 92
+ H ++G+V++ KRA
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 50.0 bits (119), Expect = 2e-09
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167
KMF+GGL D + DL++YFS+FG + + + TG RGF F+ F + + VDK++
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 168 KITLLLDRRVE 178
K L + ++
Sbjct: 61 KEHKLNGKVID 71
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 73.5 bits (180), Expect = 2e-18
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
+ + + GL ++TT++ L+ +F +GE++ V V KD T S+GFGF+ ++E +
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 74 AMSNRPHNIDGRVVETKRAVPRDE 97
MS R H IDGR + K +
Sbjct: 66 VMSQR-HMIDGRWCDCKLPNSKQS 88
Score = 46.9 bits (111), Expect = 3e-08
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 108 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVL 166
+ V GL E DL+EYFS FG + V + + +TG +GF F+ F +Y+ K V+
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK-VM 67
Query: 167 SKITLLLDRRVE 178
S+ ++ R +
Sbjct: 68 SQRHMIDGRWCD 79
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 72.9 bits (178), Expect = 5e-18
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVV-----MKDPITKRSRGFGFITYSEAKMV 71
R++++G + + T+E++ FF + + + + + F F+ +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKP 101
AM+ G+ ++ +R P D P
Sbjct: 62 TQAMAFDGIIFQGQSLKIRR--PHDYQPLP 89
Score = 48.6 bits (115), Expect = 9e-09
Identities = 11/77 (14%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 108 KKMFVGGL-KDQEEDDLREYFSQFGTIESVN-----MVTNKETGAKRGFAFIEFNDYDVV 161
++++VG + E+ + ++F+ + + V + + FAF+EF D
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 162 DKIVLSKITLLLDRRVE 178
+ + + + ++
Sbjct: 62 TQAMAFDGIIFQGQSLK 78
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 67.7 bits (165), Expect = 5e-16
Identities = 20/86 (23%), Positives = 37/86 (43%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E R VF L R L+ FF G++ DV ++ D ++RS+G ++ + E + V
Sbjct: 14 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 73
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDE 97
A+ + G + + +
Sbjct: 74 PLAIGLTGQRLLGVPIIVQASQAEKN 99
Score = 49.6 bits (118), Expect = 3e-09
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 88 ETKRAVPRDEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGA 146
++ P D + E +A + +F L DL ++FS G + V +++++ +
Sbjct: 1 KSPVREPVDNLSPEERDA--RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRR 58
Query: 147 KRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
+G A++EF + V + LL +
Sbjct: 59 SKGIAYVEFCEIQSVPLAIGLTGQRLLGVPII 90
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 66.5 bits (162), Expect = 1e-15
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDP-ITKRSRGFGFITYSEAKM 70
+ ++ K+ + + ++ ++ F +GE+ V + K T RGFGF+ + +
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 63
Query: 71 VDDAMSNRPHN--IDGRVVETKRAVPRDEI 98
A + H+ + GR + + A +
Sbjct: 64 AKKAFNALCHSTHLYGRRLVLEWADSEVTV 93
Score = 49.6 bits (118), Expect = 3e-09
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 108 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKE-TGAKRGFAFIEFNDYDVVDKIV 165
K+ V + + ++RE FS FG +++V + TGA RGF F++F K
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 166 --LSKITLLLDRRVE 178
L T L RR+
Sbjct: 69 NALCHSTHLYGRRLV 83
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 64.7 bits (157), Expect = 4e-15
Identities = 24/79 (30%), Positives = 49/79 (62%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
+++K+F+GG+ T + L+ +FEQ+G+I + +M D + + RGF F+T+ + VD
Sbjct: 1 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 60
Query: 75 MSNRPHNIDGRVVETKRAV 93
+ + H ++G E ++A+
Sbjct: 61 VIQKYHTVNGHNCEVRKAL 79
Score = 50.5 bits (120), Expect = 1e-09
Identities = 37/74 (50%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 106 TVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164
TVKK+FVGG+ +D EE LR+YF Q+G IE + ++T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 1 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 60
Query: 165 VLSKITLLLDRRVE 178
V+ K + E
Sbjct: 61 VIQKYHTVNGHNCE 74
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 64.7 bits (157), Expect = 6e-15
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
VF+G T++ L+ FF Q+G+++DV + K R F F+T+++ ++
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLCG 60
Query: 77 NRPHNIDGRVVETKRAVPRDEIGKP 101
I G V A P+
Sbjct: 61 E-DLIIKGISVHISNAEPKHNSNSG 84
Score = 37.3 bits (86), Expect = 1e-04
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 108 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVL 166
+FVG D ED+LRE+FSQ+G + V + R FAF+ F D + +
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG 60
Query: 167 SKITLLLDRRVE 178
+ + V
Sbjct: 61 EDLI-IKGISVH 71
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 64.4 bits (156), Expect = 1e-14
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
+ + K+F+GGL Y TTD SL+ +FE +G+I + VV+ D T +SRG+GF+T ++
Sbjct: 6 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 72 DDAMSNRPHNIDGRVVETKRAVPR 95
+ A + IDGR A
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 45.1 bits (106), Expect = 2e-07
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 101 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
+ + T K+FVGGL + LR+YF FG IE ++T+++TG RG+ F+ D
Sbjct: 4 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 160 VVDKIVLSKITLLLDRRVE 178
++ ++ R+
Sbjct: 64 AAERACKDPNPIIDGRKAN 82
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 63.5 bits (154), Expect = 1e-14
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
K+FIGGL D+ ++ +G + ++KD T S+G+ F Y + + D A++
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 77 N-RPHNIDGRVVETKRAVPRDE 97
+ + + +RA +
Sbjct: 62 GLNGMQLGDKKLLVQRASVGAK 83
Score = 43.5 bits (102), Expect = 5e-07
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
K+F+GGL +D ++E + FG +++ N+V + TG +G+AF E+ D +V D+ +
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 60
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 62.8 bits (152), Expect = 2e-14
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+F+GGL TT E ++ +FEQ+G++ D ++M D T R RGFGF+T+ +V+
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 78 RPHNIDGRVVETKRA 92
H I+ ++VE K+A
Sbjct: 61 HFHEINNKMVECKKA 75
Score = 44.3 bits (104), Expect = 2e-07
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLS 167
K+FVGGL + +D++ YF QFG ++ ++ +K T RGF F+ F D+V+K+
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 168 KITLLLDRRVE 178
+ ++ VE
Sbjct: 61 HFHEINNKMVE 71
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 62.1 bits (150), Expect = 5e-14
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 19 VFIGGLDYRTTDESLQAFFEQWGEI-VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
+FIG LD ++ L F +G I +M+DP T S+G+ FI ++ D A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 78 -RPHNIDGRVVETKRAVPRDEIG 99
+ R + A +D G
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSKG 83
Score = 40.9 bits (95), Expect = 5e-06
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 111 FVGGL-KDQEEDDLREYFSQFGTIESVNMV-TNKETGAKRGFAFIEFNDYDVVDKIVLSK 168
F+G L + +E L + FS FG I + + +TG +G+AFI F +D D + +
Sbjct: 2 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 61
Query: 169 ITLLLDRR 176
L R
Sbjct: 62 NGQYLCNR 69
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 61.6 bits (149), Expect = 1e-13
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
+E V++GGLD + ++ L F Q G +V+ + KD +T + +G+GF+ + +
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 71 VDDAMSN-RPHNIDGRVVETKRAVPRDE 97
D A+ + G+ + +A ++
Sbjct: 64 ADYAIKIMDMIKLYGKPIRVNKASAHNK 91
Score = 40.8 bits (95), Expect = 6e-06
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 94 PRDEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 152
P E +ATV +VGGL + E L E F Q G + + +M ++ TG +G+ F
Sbjct: 2 PISE---RNQDATV---YVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGF 55
Query: 153 IEFNDYDVVDKIV 165
+EF + D +
Sbjct: 56 VEFLSEEDADYAI 68
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 60.3 bits (145), Expect = 3e-13
Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
+E + +FIG L+ + L+ + D+ V+ T +R FG++ + A+
Sbjct: 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAED 66
Query: 71 VDDAMSNRPHNIDGRVVETKRAVPR 95
++ A+ + G ++ ++ R
Sbjct: 67 LEKALELTGLKVFGNEIKLEKPKGR 91
Score = 33.8 bits (76), Expect = 0.002
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 106 TVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164
T +F+G L ++ +L+ S+ V + TG R F +++F + ++K
Sbjct: 12 TPFNLFIGNLNPNKSVAELKVAISELFAKN-DLAVVDVRTGTNRKFGYVDFESAEDLEKA 70
Query: 165 VLSKITLLLDRRVE 178
+ + ++
Sbjct: 71 LELTGLKVFGNEIK 84
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 60.5 bits (146), Expect = 3e-13
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
P F+G L Y T+ES++ FF + + +R +GFG+ + +
Sbjct: 12 KSPP--YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDS 69
Query: 71 VDDAMSNRPHNIDGRVVETKRAVPRDE 97
+ A+S ++ + + A +
Sbjct: 70 LLSALSLNEESLGNKRIRVDVADQAQD 96
Score = 40.9 bits (95), Expect = 7e-06
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 99 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 157
G + F+G L D E+ ++E+F +GF + EF D
Sbjct: 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED 66
Query: 158 YDVVDKIVLSKITLLLDRRVE 178
D + + L ++R+
Sbjct: 67 LDSLLSALSLNEESLGNKRIR 87
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 60.1 bits (145), Expect = 4e-13
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVV--VMKDPITKRSRGFGFITY---SEAKMVD 72
++FIGG+ E + + E V V ++RGF F+ Y A M
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 73 DAMSNRPHNIDGRVVETKRAVPRDE 97
+ + G + A P +
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEID 87
Score = 40.4 bits (94), Expect = 9e-06
Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIES--VNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
++F+GG+ K ++ +++ E ++ + + + RGFAF+E+ +
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 59.7 bits (144), Expect = 4e-13
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+ + + + + + + FF + I V +K G + + A+
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 77 NRP-HNIDGRVVETKRA 92
+ I R V+
Sbjct: 70 DLNDRPIGSRKVKLVLG 86
Score = 38.5 bits (89), Expect = 4e-05
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 99 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 157
GKP + V + D++ ++F + I + E G G A + F
Sbjct: 5 GKPGPT----IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES 60
Query: 158 YDVVDKIVLSKI-TLLLDRRVE 178
D V+ + R+V+
Sbjct: 61 RDEATAAVIDLNDRPIGSRKVK 82
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 58.4 bits (141), Expect = 1e-12
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
+++G L T+ L F G I+ + V +D IT+RS G+ ++ + + + A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 78 RP-HNIDGRVVETKRA 92
I G+ V +
Sbjct: 62 MNFDVIKGKPVRIMWS 77
Score = 48.0 bits (114), Expect = 8e-09
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
++VG L D E L E FS G I S+ + + T G+A++ F ++ +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 59
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 58.2 bits (140), Expect = 2e-12
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
K+F+GGL + T ++SL+ F ++G+I +VVV+KD T+RSRGFGF+T+ DAM
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 77 N-RPHNIDGRVVETKRAVPRDE 97
++DGR + +A +
Sbjct: 66 AMNGKSVDGRQIRVDQAGKSSD 87
Score = 34.7 bits (79), Expect = 0.001
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
K+FVGGL D E L + FS++G I V +V ++ET RGF F+ F + D +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 57.8 bits (139), Expect = 2e-12
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS- 76
K++IG L T + L+ F + V+ G+ F+ Y + A+
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK------SGYAFVDYPDQNWAIRAIET 56
Query: 77 -NRPHNIDGRVVETKRAVPRDE 97
+ + G+++E +V +
Sbjct: 57 LSGKVELHGKIMEVDYSVSKKL 78
Score = 36.2 bits (83), Expect = 2e-04
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 157
K+++G L DDLR+ F + + K G+AF+++ D
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRK------LPLAGQVLLKSGYAFVDYPD 46
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 57.7 bits (139), Expect = 2e-12
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
R +++GGL D+ L A F +G+I D+ + D T++ RGF F+ + A+ A+
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 77 N-RPHNIDGRVVETKRAVPR 95
N + GR + A P
Sbjct: 66 NMNESELFGRTIRVNLAKPM 85
Score = 39.3 bits (91), Expect = 2e-05
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 106 TVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164
T + ++VGGL ++ ++ L F FG I + + + ET RGFAF+EF +
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
Query: 165 V 165
+
Sbjct: 64 I 64
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 57.9 bits (139), Expect = 3e-12
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
++ + VFI L + + +E+L +Q+G++ V V+ P T+ S+G F + +
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 71 VDDAMSNRPHN-------IDGRVVETKRAVPRDE 97
++ +DGR ++ AV RDE
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 96
Score = 32.9 bits (74), Expect = 0.005
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 108 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
K +F+ L D EE+ L E QFG ++ V +V + +T +G AF +F + K +
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 67
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 58.1 bits (140), Expect = 4e-12
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
PE R ++I L Y+ T E + F ++G I ++ T +RG ++ Y +
Sbjct: 4 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDIFDAK 60
Query: 73 DAMSN-RPHNIDGRVVETKRAVPRDEIGKPEANATVKKM 110
+A + N+ R + K + +++
Sbjct: 61 NACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQL 99
Score = 43.5 bits (102), Expect = 9e-07
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 101 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
PE N + ++ L +++ + F ++G I + + T RG A++ + D
Sbjct: 4 PEVNRIL---YIRNLPYKITAEEMYDIFGKYGPIRQIRV---GNTPETRGTAYVVYEDIF 57
Query: 160 VVDK 163
Sbjct: 58 DAKN 61
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 57.0 bits (137), Expect = 7e-12
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
++F+ L Y +++E L+ F +G + ++ D +TK+ +GF F+T+ + A +
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 77 N-RPHNIDGRVVETKRAVPRDE 97
GR++ + + E
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKKE 90
Score = 37.0 bits (85), Expect = 2e-04
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 108 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
++FV L E+DL + FS +G + ++ + T +GFAF+ F + K
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 55.7 bits (134), Expect = 2e-11
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+++G L + TT+E + F + G+I +++ D + K + GF F+ Y ++AM
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 77 N-RPHNIDGRVVETKRAVPRDE 97
+D R++ T E
Sbjct: 68 YINGTRLDDRIIRTDWDAGFKE 89
Score = 41.1 bits (96), Expect = 5e-06
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 108 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
++VG L E+ + E FS+ G I+ + M +K GF F+E+ + +
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 66
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 55.3 bits (133), Expect = 2e-11
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA-- 74
+++ L TD+ L F ++G IV +++D +T R RG F+ Y++ + +A
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
Query: 75 -MSNRPHNIDGRVVETKRA 92
++N + + + A
Sbjct: 67 ALNNVIPEGGSQPLSVRLA 85
Score = 48.4 bits (115), Expect = 8e-09
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
++V L + +D L F ++G+I N++ +K TG RG AF+ +N + + +
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 65
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 55.1 bits (132), Expect = 2e-11
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
P+ + + GL TT+ L+ F ++G I DV ++ D ++RSRGF F+ +
Sbjct: 5 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 64
Query: 72 DDAMSN-RPHNIDGRVVE 88
+A +DGR +
Sbjct: 65 KEAKERANGMELDGRRIR 82
Score = 40.8 bits (95), Expect = 4e-06
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 100 KPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 158
P+ N + V GL E DLRE FS++G I V++V ++++ RGFAF+ F +
Sbjct: 5 NPDPNCCL---GVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 61
Query: 159 DVVDKIV 165
D +
Sbjct: 62 DDAKEAK 68
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 54.5 bits (131), Expect = 5e-11
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 11 TEPESL-RKVFIGGLD-YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEA 68
T+P S+ +VFIG L+ ++A F ++G+IV V +GF F+ Y
Sbjct: 9 TDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFAFVQYVNE 60
Query: 69 KMVDDAMSNRP-HNIDGRVVETKRAVPRDE 97
+ A++ I G+V++ A
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKV 90
Score = 49.5 bits (118), Expect = 3e-09
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 99 GKPEANATVKKMFVGGL--KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 156
GK + + ++F+G L ++ D+ FS++G I ++ +GFAF+++
Sbjct: 7 GKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYV 58
Query: 157 DYDVVDKIV 165
+ V
Sbjct: 59 NERNARAAV 67
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 54.4 bits (130), Expect = 6e-11
Identities = 14/85 (16%), Positives = 35/85 (41%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
+ + V + GL + + E + FF + + + + RS G F+ ++ ++
Sbjct: 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIA 70
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRD 96
+ A+ I R +E ++ +
Sbjct: 71 EKALKKHKERIGHRYIEIFKSSRAE 95
Score = 35.2 bits (80), Expect = 7e-04
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 99 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 157
G A + + GL ++++ ++FS + + + G G AF++F
Sbjct: 7 GNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFAS 66
Query: 158 YDVVDKIVLSKITLLLDRRVE 178
++ +K + + R +E
Sbjct: 67 QEIAEKALKKHKERIGHRYIE 87
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 53.6 bits (128), Expect = 8e-11
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 17 RKVFIGGLDYRTTDESL--QAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
R++ I L DE+L ++F + + F+ + + A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 75 MSNRPHNIDGRVVETKRAVPR 95
+ + R + A +
Sbjct: 65 LQMNRSLLGNREISVSLADKK 85
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 53.5 bits (128), Expect = 9e-11
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFG-FITYSEAKMVDDAMS 76
+FI LD +++L F +G I+ V+ D + GF F T A+ + M+
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 69
Query: 77 NRPHNIDGRVVETKRAVPRDE 97
++ R V R R E
Sbjct: 70 G--MLLNDRKVFVGRFKSRKE 88
Score = 34.2 bits (78), Expect = 0.001
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 107 VKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
V +F+ L K + L + FS FG I S +V ++ +G+ F+ F + ++ +
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAI 65
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 53.5 bits (128), Expect = 9e-11
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+++ GL T + L+ F Q+G I+ ++ D +T SRG GFI + + ++A+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 77 N-RPHNIDGR 85
G
Sbjct: 67 GLNGQKPSGA 76
Score = 47.3 bits (112), Expect = 2e-08
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 104 NATVK--KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 160
+A+++ ++V GL K + +L + FSQ+G I + ++ ++ TG RG FI F+
Sbjct: 1 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 60
Query: 161 VDKIV 165
++ +
Sbjct: 61 AEEAI 65
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 53.1 bits (127), Expect = 1e-10
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
S + + L TD L A F G I +M+D T S G+ F+ ++ A
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 75 MSN-RPHNIDGRVVETKRAVP 94
+ + + ++ A P
Sbjct: 61 IKVLNGITVRNKRLKVSYARP 81
Score = 43.4 bits (102), Expect = 5e-07
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
+ V L +D + +L F G I + ++ + +TG G+AF++F + +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 53.6 bits (128), Expect = 1e-10
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 3 PRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
P + EP + +++ L R T+ L + F ++ E + +T R RG F
Sbjct: 7 PMFSSYNPGEPN--KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAF 64
Query: 63 ITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRDE 97
IT+ ++ A+ + + G+++ + + +
Sbjct: 65 ITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 100
Score = 31.3 bits (70), Expect = 0.020
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 88 ETKRAVPRDEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGA 146
E R +P K +++ L E DL F++F + + TG
Sbjct: 1 EEIRKIPM--FSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGR 58
Query: 147 KRGFAFIEFNDYDVVDKIV 165
RG AFI F + ++ + +
Sbjct: 59 MRGQAFITFPNKEIAWQAL 77
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 53.5 bits (128), Expect = 1e-10
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE 67
S+ PE +FI L D+ L F +G +V V D T S+ FGF++Y
Sbjct: 11 SQKEGPEG-ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 69
Query: 68 AKMVDDAMSN-RPHNIDGRVVETKRAVPRDE 97
A+ + I + ++ + +++
Sbjct: 70 PVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 100
Score = 32.7 bits (74), Expect = 0.005
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
+F+ L ++ + DL + F FG + S + +K+T + F F+ +++ +
Sbjct: 20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 77
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 53.5 bits (128), Expect = 1e-10
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+++ + + +R D L+ F Q+G+I+DV ++ + S+GFGF+T+ + D A
Sbjct: 12 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRARE 69
Query: 77 N-RPHNIDGRVVETKRAVPR 95
++GR +E A R
Sbjct: 70 KLHGTVVEGRKIEVNNATAR 89
Score = 40.0 bits (93), Expect = 1e-05
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 99 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 157
G E+ +T K++ V + + DLR+ F QFG I V ++ N+ +GF F+ F +
Sbjct: 3 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFEN 60
Query: 158 YDVVDKIV 165
D+
Sbjct: 61 SADADRAR 68
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 52.7 bits (126), Expect = 2e-10
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
S++ +++ L T++E ++ F K+ R + F+ +S + +
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPG------AVERVKKIRDYAFVHFSNREDAVE 59
Query: 74 AMSN-RPHNIDGRVVETKRAVPRD 96
AM +DG +E A P D
Sbjct: 60 AMKALNGKVLDGSPIEVTLAKPVD 83
Score = 34.6 bits (79), Expect = 0.001
Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 101 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
+ ++VK ++V L E+ + + F+ + R +AF+ F++ +
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNI------KPGAVERVKKIRDYAFVHFSNRE 55
Query: 160 VVDKIV 165
+ +
Sbjct: 56 DAVEAM 61
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 52.3 bits (125), Expect = 3e-10
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 20 FIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDP---ITKRSRGFGFITYSEAKMVDDAMS 76
FI L++ TT+E+L+ F + G I + K S GFGF+ Y + + A+
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 77 N-RPHNIDGRVVETKRAVPRD 96
+ H +DG +E + +
Sbjct: 62 QLQGHTVDGHKLEVRISERAT 82
Score = 42.3 bits (99), Expect = 2e-06
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 110 MFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKE---TGAKRGFAFIEFNDYDVVDKIV 165
+F+ L E+ L+ FS+ G I+S + K GF F+E+ + K +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 52.4 bits (125), Expect = 3e-10
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+ + L T + LQ F +G I + + KD T +S+GF FI++ + A++
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 77 N-RPHNIDGRVVETKRAVPR 95
D ++ + A P
Sbjct: 69 GVSGFGYDHLILNVEWAKPS 88
Score = 35.4 bits (81), Expect = 5e-04
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 108 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
+ V L +D E DL+E F FG+I + + +K TG +GFAFI F+ + + +
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 67
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 53.0 bits (126), Expect = 5e-10
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 1 MKPRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGF 60
+ EP+ LR + + + + L+ FE++G I V ++ D T++SRG+
Sbjct: 27 QQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGY 86
Query: 61 GFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRDE 97
GF+ + A++ NI + ++ A +
Sbjct: 87 GFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124
Score = 33.0 bits (74), Expect = 0.009
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 75 MSNRP----HNIDGRVVETKRAVPRDEIGKPEANA-----TVKKMFVGGL-KDQEEDDLR 124
MS P ++ G+ + ++ + + P ++ + V + +E LR
Sbjct: 1 MSQIPLVSQYDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLR 60
Query: 125 EYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
+ F ++G IESV +V ++ET RG+ F++F + +
Sbjct: 61 QLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAI 101
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 51.6 bits (123), Expect = 7e-10
Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
++++G L + ++ F ++G I D+ + F F+ + + + +DA+
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP---PFAFVEFEDPRDAEDAVY 71
Query: 77 NRP-HNIDGRVVETKRAVPR 95
R ++ DG + +
Sbjct: 72 GRDGYDYDGYRLRVEFPRSG 91
Score = 36.2 bits (83), Expect = 3e-04
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
+++VG L D D+ + F ++G I + K FAF+EF D + V
Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIR---DIDLKNRRGGPPFAFVEFEDPRDAEDAV 70
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 51.7 bits (123), Expect = 7e-10
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
+ + V + GL YR T+ + FF + + + R G + ++ +
Sbjct: 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEADVEFATHEDA 68
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDEIGKP 101
AM+ N+ R VE G
Sbjct: 69 VAAMAKDKANMQHRYVELFLNSTAGTSGSG 98
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 51.5 bits (123), Expect = 7e-10
Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 2 KPRYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFG 61
+ R++D V+ GG+ TD+ ++ F +G+I+++ V + +
Sbjct: 4 QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YS 57
Query: 62 FITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRDEIGKPEANAT 106
F+ +S + A+ + I+G VV + GK + T
Sbjct: 58 FVRFSTHESAAHAIVSVNGTTIEGHVV-------KCYWGKESPDMT 96
Score = 38.0 bits (88), Expect = 6e-05
Identities = 11/74 (14%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 91 RAVPRDEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRG 149
+ + +++ +++ ++ GG+ + +R+ FS FG I + + K
Sbjct: 3 KQLRFEDVVN-QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------ 55
Query: 150 FAFIEFNDYDVVDK 163
++F+ F+ ++
Sbjct: 56 YSFVRFSTHESAAH 69
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 51.1 bits (122), Expect = 8e-10
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
V + G + L F Q+G I+ V+ + I Y A+S
Sbjct: 6 WVTVFGFPQASASYILLQFA-QYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK 58
Query: 78 RPHNIDGRV-VETKRAVPRDEI 98
+ + K + ++ +
Sbjct: 59 DGRIFGESIMIGVKPCIDKNVM 80
Score = 33.0 bits (75), Expect = 0.003
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 6/53 (11%)
Query: 111 FVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 163
V G + F+Q+G I M + I + K
Sbjct: 8 TVFGFPQASASYILLQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARK 54
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 51.4 bits (122), Expect = 1e-09
Identities = 9/81 (11%), Positives = 20/81 (24%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
I + + T + F E + V + + G + + +
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 68
Query: 77 NRPHNIDGRVVETKRAVPRDE 97
++GR D
Sbjct: 69 LHRKKLNGREAFVHVVTLEDM 89
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 51.2 bits (122), Expect = 1e-09
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 6 DDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITY 65
D + + R + L + T++ L+ FE EI +S+G +I +
Sbjct: 6 DPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEI-----RLVSQDGKSKGIAYIEF 60
Query: 66 SEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95
+ + + IDGR V +
Sbjct: 61 KSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91
Score = 34.6 bits (79), Expect = 0.001
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 108 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 163
+ + L + ED+L+E F I V+ G +G A+IEF +K
Sbjct: 17 RTLLAKNLSFNITEDELKEVFEDALEIRLVSQ-----DGKSKGIAYIEFKSEADAEK 68
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 51.0 bits (121), Expect = 1e-09
Identities = 13/93 (13%), Positives = 37/93 (39%)
Query: 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKM 70
+ E+ V++ GL + ++ + FF++ + D + + ++ G GF+ +
Sbjct: 13 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 72
Query: 71 VDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEA 103
A+ + R ++ + + K +
Sbjct: 73 YKAALCRHKQYMGNRFIQVHPITKKGMLEKIDM 105
Score = 27.2 bits (59), Expect = 0.69
Identities = 8/57 (14%), Positives = 21/57 (36%)
Query: 122 DLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVLSKITLLLDRRVE 178
+ ++F + +E + G G F+EF + + + +R ++
Sbjct: 34 HVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQ 90
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 50.5 bits (120), Expect = 1e-09
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+F+ + ++ +Q F +GEI ++ + D T S+G+ + Y K A
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 77 N-RPHNIDGRVVETKRAVPR 95
I G+ ++ +
Sbjct: 68 ALNGAEIMGQTIQVDWCFVK 87
Score = 32.8 bits (74), Expect = 0.004
Identities = 14/66 (21%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 101 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P+ + +FV + ++ +ED+++E F +G I+++++ ++ TG +G+A +E+ +
Sbjct: 1 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 60
Query: 160 VVDKIV 165
Sbjct: 61 QALAAK 66
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 50.5 bits (120), Expect = 2e-09
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVV--------MKDPITKRSRGFGFI 63
E +++ GL+ T + L FF+Q G + D T + +G +
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 64 TYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95
+Y + A+ + G ++ A +
Sbjct: 64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
Score = 34.4 bits (78), Expect = 0.001
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 101 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIES--------VNMVTNKETGAKRGFA 151
P+ ++ ++V GL DDL ++F Q G ++ +++ +KETG +G A
Sbjct: 2 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDA 61
Query: 152 FIEFNDYDVVDKIV 165
+ + D V
Sbjct: 62 TVSYEDPPTAKAAV 75
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 50.1 bits (119), Expect = 2e-09
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
S + + L T E ++ F GEI +++D IT +S G+GF+ Y + K + A
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 75 MSN-RPHNIDGRVVETKRAVP 94
++ + + ++ A P
Sbjct: 61 INTLNGLRLQTKTIKVSYARP 81
Score = 38.9 bits (90), Expect = 2e-05
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
+ V L ++ +++ R F G IES +V +K TG G+ F+ + D +K +
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 49.1 bits (116), Expect = 4e-09
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
V + L + +F+ G I+ V V F I ++ A++
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR--FARIEFARYDGALAAITK 59
Query: 78 RPHNIDGRVVETKRA 92
+ +
Sbjct: 60 THKVVGQNEIIVSHL 74
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 48.8 bits (116), Expect = 4e-09
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
K+ + LD+ +D +Q F ++G + V D + RS G + + AM
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 60
Query: 78 -RPHNIDGRVVETKRA 92
+DGR + +
Sbjct: 61 YNGVPLDGRPMNIQLV 76
Score = 41.1 bits (96), Expect = 4e-06
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
K+ V L + D++E F++FGT++ + ++ +G G A + F K +
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAM 58
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 48.6 bits (115), Expect = 7e-09
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+++ T +++ + + + + SR F +I + + +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 77 N-RPHNIDGRVVETKRAVP 94
I+G + TK + P
Sbjct: 62 KLNGLKIEGYTLVTKVSNP 80
Score = 34.8 bits (79), Expect = 8e-04
Identities = 6/58 (10%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
+++ + ++R+ + + + R FA+I+ + V
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 48.5 bits (115), Expect = 7e-09
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFG-FITYSEAKMVDDAM 75
R +++G L T+ + F Q G ++ + + F F + +A AM
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 76 SNRPHNIDGRVVETKRAVPRDE 97
+ I G+ V+ A
Sbjct: 69 NG--RKILGKEVKVNWATTPSS 88
Score = 35.0 bits (80), Expect = 8e-04
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 102 EANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 160
E + + ++VG L +D E + + FSQ G +S M+T + + F+EF ++
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRD 60
Query: 161 VDKIV 165
+
Sbjct: 61 AAAAL 65
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 48.6 bits (115), Expect = 1e-08
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDD 73
SLR VF+G + Y T+E L+ F + G +V ++ D T + +G+GF Y + +
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 65
Query: 74 AMSNRP-HNIDGRVVETKRAVPRDE 97
AM N GR + A
Sbjct: 66 AMRNLNGREFSGRALRVDNAASEKN 90
Score = 34.0 bits (77), Expect = 0.002
Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 101 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
P + +++ +FVG + + E+ L++ FS+ G + S +V ++ETG +G+ F E+ D +
Sbjct: 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61
Query: 160 VVDKIV 165
+
Sbjct: 62 TALSAM 67
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 47.3 bits (112), Expect = 2e-08
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
++F+G L T+E ++ FE++G+ +V + KD FGFI + + A
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAKV 62
Query: 77 NRP-HNIDGRVVETKRAVPR 95
+ G+ + + A
Sbjct: 63 ELDNMPLRGKQLRVRFACHS 82
Score = 33.8 bits (77), Expect = 0.002
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 109 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
++FVG L D E+++R+ F ++G V + +K F FI + +
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAK 61
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 45.0 bits (106), Expect = 1e-07
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
P +++ G D T L+ F +G I+D+ + F+TY + + D
Sbjct: 2 PRKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESAD 53
Query: 73 DAMSN-RPHNIDGRVVETKRAVPR 95
A++ ++ ++ A +
Sbjct: 54 QAVAELNGTQVESVQLKVNIARKQ 77
Score = 34.6 bits (79), Expect = 7e-04
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 108 KKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
++V G D LR FS FG I ++M R AF+ + + D+ V
Sbjct: 6 NTLYVYGE-DMTPTLLRGAFSPFGNIIDLSM------DPPRNCAFVTYEKMESADQAV 56
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 45.8 bits (108), Expect = 1e-07
Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
+ ++ + L Y T + L F ++G ++ ++ ++ + Y++
Sbjct: 4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQ 59
Query: 73 DAMSN 77
A +
Sbjct: 60 HAKLS 64
Score = 36.2 bits (83), Expect = 4e-04
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 103 ANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVV 161
+ V ++ V L D L + FS+FGT+ + T + A +++ D
Sbjct: 3 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSA 58
Query: 162 DK 163
Sbjct: 59 QH 60
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 45.2 bits (106), Expect = 1e-07
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 17 RKVFIGGLDYRTTDESLQAFFE---QWGEIVDVVVMKDPITKRS---RGFGFITYSEAKM 70
VF+ GL R D + E ++G+I VV+ S ++TY ++
Sbjct: 9 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED 68
Query: 71 VDDAMSN-RPHNIDGRVV 87
A+ +DGR +
Sbjct: 69 ALRAIQCVNNVVVDGRTL 86
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 44.7 bits (105), Expect = 2e-07
Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 17 RKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
++I L+ + + L+ A F ++G+I+D + + + RG F+ + E
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILD---ILVSRSLKMRGQAFVIFKEVSSAT 60
Query: 73 DAMSN-RPHNIDGRVVETKRAVPRDEI 98
+A+ + + + + + A +I
Sbjct: 61 NALRSMQGFPFYDKPMRIQYAKTDSDI 87
Score = 29.6 bits (66), Expect = 0.055
Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 108 KKMFVGGL-KDQEEDDLRE-YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
+++ L + ++D+L++ + F + + + RG AF+ F + +
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 42.8 bits (100), Expect = 1e-06
Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
R V+I G T + ++ + E G++++ + M+ + K +G F+ + + +
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 77 NRPHNIDGRVVETKRA 92
+
Sbjct: 66 TPGQKYKETDLLILFK 81
Score = 28.9 bits (64), Expect = 0.093
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 108 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVL 166
+ +++ G D DD++E+ G + ++ M A +G F+ F+ + K V
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 167 SKITLLLDRRVE 178
+ + +
Sbjct: 66 TPGQKYKETDLL 77
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 40.5 bits (94), Expect = 5e-06
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN- 77
++I GL TTD+ L + +G+IV + D T + +G+GF+ + A++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 78 RPHNIDGRVV 87
+ + ++
Sbjct: 61 KASGVQAQMA 70
Score = 29.7 bits (66), Expect = 0.036
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 111 FVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165
++ GL + DL + +G I S + +K T +G+ F++F+ K V
Sbjct: 2 YIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 57
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 40.9 bits (95), Expect = 8e-06
Identities = 20/86 (23%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
E F G LD +T E L F GEI + ++ EA
Sbjct: 7 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKE--KAKEALGK 64
Query: 72 DDAMSNRPHNIDGRVVETKRAVPRDE 97
+N N+ R E V E
Sbjct: 65 AKDANN--GNLQLRNKEVTWEVLEGE 88
Score = 31.3 bits (70), Expect = 0.020
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 99 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKR 148
G E F G L +DL FS G I+ ++ V + G
Sbjct: 3 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL 53
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 40.5 bits (94), Expect = 8e-06
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 4 RYDDSKC-TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGF 62
R++ + + V GGL + L E+ G + +++ + + F
Sbjct: 7 RHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSF 60
Query: 63 ITYSEAKMVDDAMSN 77
Y + A
Sbjct: 61 ARYRTTEESKRAYVT 75
Score = 29.7 bits (66), Expect = 0.059
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 90 KRAVPRDEIGKPEANATVKKMFV--GGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGA 146
K + R E + + AT + + V GGL + L + G ++++ M NK
Sbjct: 2 KHTLLRHEGIETVSYAT-QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP--- 57
Query: 147 KRGFAFIEFNDYDVVDK 163
++F + + +
Sbjct: 58 ---YSFARYRTTEESKR 71
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.2 bits (91), Expect = 2e-05
Identities = 9/74 (12%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74
++ V + +E E++GE+ ++ V + G ++ + + + A
Sbjct: 26 AVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKA 84
Query: 75 MSN-RPHNIDGRVV 87
+ + +G+ +
Sbjct: 85 VIDLNNRWFNGQPI 98
Score = 36.9 bits (85), Expect = 2e-04
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 103 ANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVV 161
+ V + + D+ E+ E ++G +E +N+ N G +++F +
Sbjct: 23 LRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDA 81
Query: 162 DKIV 165
+K V
Sbjct: 82 EKAV 85
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 38.9 bits (90), Expect = 3e-05
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
++++GGL T+ +L F+++G I + +K + + A+ M
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAY---IQYESLDAAQAACAKMR 74
Query: 77 NRPHNIDGRVVETKRAVPR 95
P R + A
Sbjct: 75 GFPLGGPDRRLRVDFAKSG 93
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 38.6 bits (89), Expect = 5e-05
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
V + GL + L E++G I V++M F AK +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQAL---VEFENIDSAKECVTFAA 72
Query: 77 NRPHNIDGRVVETKRAVPRDEIGKPEAN 104
+ P I G+ + + I +P +
Sbjct: 73 DVPVYIAGQQAFFNYSTSK-RITRPGNS 99
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 37.4 bits (86), Expect = 1e-04
Identities = 7/80 (8%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
+ + L + + + + + +K R++ F+T + +A+
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 77 N-RPHNIDGRVVETKRAVPR 95
++ G+ + +
Sbjct: 59 MFHQYSFRGKDLIVQLQPTD 78
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 37.1 bits (85), Expect = 1e-04
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 8/87 (9%)
Query: 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMV 71
S +V + GL + + L+ + + G G + Y + +
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREA-------GDVCYADVQKDGMGMVEYLRKEDM 63
Query: 72 DDAMSN-RPHNIDGRVVETKRAVPRDE 97
+ A+ ET E
Sbjct: 64 EYALRKLDDTKFRSHEGETSYIRVYPE 90
Score = 27.4 bits (60), Expect = 0.37
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 99 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQF 130
G P + ++ V GL DL+++ +
Sbjct: 7 GGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA 39
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 37.1 bits (85), Expect = 2e-04
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
++I L ++ L+ + +G++ + + SRG GF + + +
Sbjct: 19 TNLYISNLPLSMDEQELENMLKPFGQV-ISTRILRDSSGTSRGVGFARMESTEKCEAVI- 76
Query: 77 NRPHNIDGRVVETKRAVPR 95
+ +G+ ++T V
Sbjct: 77 ---GHFNGKFIKTPPGVSA 92
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 36.3 bits (83), Expect = 3e-04
Identities = 9/86 (10%), Positives = 19/86 (22%), Gaps = 12/86 (13%)
Query: 18 KVFIGGLD-----YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVD 72
+ + T ++ F + + K I +S
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAA 60
Query: 73 DAMSN-RPHNIDGRVVETKRAVPRDE 97
DA G+ ++ A
Sbjct: 61 DARLRLHKTEFLGKEMKLYFAQTLHI 86
Score = 32.5 bits (73), Expect = 0.008
Identities = 3/57 (5%), Positives = 11/57 (19%), Gaps = 12/57 (21%)
Query: 109 KMFVGGL------KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159
+ + + F + + + I F++
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPL 57
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 34.1 bits (78), Expect = 0.002
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 120 EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 163
+DLR S+FG I + + G A + F D + D
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRH----PDGVASVSFRDPEEADY 72
Score = 32.2 bits (73), Expect = 0.008
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 26 YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS---EAKMVDDAMSNRPHNI 82
E L+ ++G+I +++ G +++ EA + R
Sbjct: 29 LNEIREDLRVECSKFGQIRKLLLFDR----HPDGVASVSFRDPEEADYCIQTLDGR--WF 82
Query: 83 DGRVVETKRAVPR 95
GR + +
Sbjct: 83 GGRQITAQAWDGT 95
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 34.1 bits (77), Expect = 0.002
Identities = 9/85 (10%), Positives = 23/85 (27%), Gaps = 8/85 (9%)
Query: 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77
+V + GL + + L+ + G G + + + + A+
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREA-------GDVCYADVYRDGTGVVEFVRKEDMTYAVRK 54
Query: 78 -RPHNIDGRVVETKRAVPRDEIGKP 101
ET + + +
Sbjct: 55 LDNTKFRSHEGETAYIRVKVDGPRS 79
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 34.0 bits (77), Expect = 0.002
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75
+ + + ++E L+ F G VV ++ R I + A+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGG----VVKGFKFFQKDRKMALIQMGSVEEAVQAL 65
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 33.2 bits (75), Expect = 0.004
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 17 RKVFIGGLD-YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75
+ + L+ R T +SL F +G++ V ++ + + ++ AM
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-----NALVQMADGNQAQLAM 57
Query: 76 SN-RPHNIDGRVVETKRAVPRDEIGKPE 102
S+ H + G+ + + ++ E
Sbjct: 58 SHLNGHKLHGKPIRITLSKHQNVQLPRE 85
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.4 bits (70), Expect = 0.014
Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76
R + I L T+ + A +G++ +++++K T A + + S
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLE---LATEEAAITMVNYYS 65
Query: 77 NRPHNIDGRVVETKRAVPR 95
++ + + + + +
Sbjct: 66 AVTPHLRNQPIYIQYSNHK 84
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 30.4 bits (68), Expect = 0.032
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 99 GKPEANATVKKMFVGGLKDQE--EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 156
G+ E V + + + L + FG I + ++ AFIE
Sbjct: 3 GRVETRRVV---HIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN------EAFIEMA 53
Query: 157 DYDVVDKIV 165
+ V
Sbjct: 54 TTEDAQAAV 62
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 29.5 bits (65), Expect = 0.085
Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 7/103 (6%)
Query: 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE 67
S + S + L T +Q F ++G + V++ + + + E
Sbjct: 2 SSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG------ITAIVEFLE 55
Query: 68 AKMVDDAMSN-RPHNIDGRVVETKRAVPRDEIGKPEANATVKK 109
A + + + A P+ + +
Sbjct: 56 PLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHE 98
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 28.7 bits (63), Expect = 0.086
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNR 78
+ I GL T++ + + +K + +G F+T + + A++
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 79 P-HNIDGRVVETKRAVPRD 96
+ R + + P D
Sbjct: 54 HQSRLRERELSVQLQ-PTD 71
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 28.7 bits (63), Expect = 0.11
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE 67
++ +P + + +F+ L T + L F Q+ +V ++ + F T +
Sbjct: 1 AQTEQPPN-QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFT--TELQ 57
Query: 68 AKMVDDAMSNRPHNIDGRVVETKRA 92
+ +A+ ++ A
Sbjct: 58 SNAAKEALQGFKIT-PTHAMKITFA 81
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId:
34018]}
Length = 118
Score = 27.7 bits (61), Expect = 0.39
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 53 ITKRSRGF-GFITYSEAK--MVDDAMSNRPHNIDGRVVETKRAVPR--DEIGKPEANATV 107
+ R G YS + + P NI + + + + + G E
Sbjct: 34 VIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRKFLADAGHAEQAKGS 93
Query: 108 KKMFVGGLKDQEEDDLREYFSQF 130
KM +QE D+ Y QF
Sbjct: 94 TKMVFKLPDEQERKDVVAYLKQF 116
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.6 bits (61), Expect = 0.40
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 99 GKPEANATVKKMF-VGGLKDQEE-----DDLREYFSQFGTIESVNMVTNKETGAK--RGF 150
G P + M L D EE +D+R+ S++G ++S+ + + G
Sbjct: 1 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 60
Query: 151 AFIEFNDYDVVDKIV 165
F+EF K +
Sbjct: 61 IFVEFTSVFDCQKAM 75
>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri
[TaxId: 316]}
Length = 92
Score = 25.4 bits (54), Expect = 2.0
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 61 GFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKDQEE 120
G S A + ++ + K + L DQ+
Sbjct: 19 GVDGNSPAPNFPKLAGQGERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGMLDPLSDQDL 78
Query: 121 DDLREYF-SQFGTI 133
+D+ YF SQ G++
Sbjct: 79 EDIAAYFSSQKGSV 92
>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum
sulfidophilum [TaxId: 35806]}
Length = 138
Score = 25.6 bits (55), Expect = 2.9
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 98 IGKPEANATVKKMFVGGLKDQEEDDLREY 126
G + ++ + + +D+ Y
Sbjct: 104 PGIAFTSKPIEGEIRPLMTAGQIEDVVAY 132
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory
sulfite reductase {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 111
Score = 24.3 bits (53), Expect = 5.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 123 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 156
LREY+ FGT + MVT KETG + F
Sbjct: 59 LREYWETFGTCPPIKMVT-KETGFSLEKIYQLFP 91
>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 124
Score = 24.5 bits (52), Expect = 6.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 109 KMFVGGLKDQEEDDLREYFSQFG 131
KM K+ + ++ Y Q
Sbjct: 99 KMTFKLKKEADAHNIWAYLQQVA 121
>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId:
1085]}
Length = 112
Score = 24.0 bits (51), Expect = 7.7
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 94 PRDEIGKPEANATVK-KMFVGGLKDQEEDDLREY 126
P+ + + + K KM KD E +++ Y
Sbjct: 74 PKAFVLEKSGDPKAKSKMTFKLTKDDEIENVIAY 107
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna
(Thunnus thynnus) [TaxId: 8237]}
Length = 103
Score = 23.7 bits (50), Expect = 8.2
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 1/83 (1%)
Query: 51 DPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKM 110
+ K G K + + + + + P+ KM
Sbjct: 21 ENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKM 80
Query: 111 -FVGGLKDQEEDDLREYFSQFGT 132
F G K E DL Y +
Sbjct: 81 IFAGIKKKGERQDLVAYLKSATS 103
>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris
[TaxId: 1076]}
Length = 114
Score = 23.6 bits (50), Expect = 9.1
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 109 KMFVGGLKDQEEDDLREY 126
KM +Q+ D+ Y
Sbjct: 92 KMTFKLANEQQRKDVVAY 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.389
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 672,306
Number of extensions: 30403
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 162
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)