BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2875
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 47 MAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRH 106
AA +K Y C C + + +L H + H G K + C +C K+FS K +L++H R
Sbjct: 12 QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 107 HM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHAD 164
H E +C C + F L H ++H + + CP C + F+ +R H H
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTG 130
Query: 165 ENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDA 222
E +KC +C K FS E H H R H K Y+C EC K F+ D + H R + K+ +
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 1/163 (0%)
Query: 338 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCK 397
Y C C K F +S +H H +KC C K++ +K+L RH TH + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 398 SCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPK 456
CG+ F L HQ H K + C +C +SF HL+ H H K + CP+C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 457 LFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 499
F E +L H H + +KC C K F + L+ H H
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 80/172 (46%), Gaps = 6/172 (3%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVK 132
A + G K + C +C K+FS +L++H R H E +C C + F D + L H +
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR 70
Query: 133 SHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA 191
+H + +KCP C + F+ +R H H E + C +C K FS H R H
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 192 --KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
K Y+C EC K F+ ED + H R H E Y C C SF + L H
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVH 180
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 1/161 (0%)
Query: 368 CHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQC 426
C C K++ +L H TH + ++C CG+ F ++ L HQ H K +KC +C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 427 EESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVF 486
+SF + +L+ H H K + CP+C K F +HL+ H H + +KC C K F
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 487 VHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
+ +L H H + + C C +F+ + L H R+H
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 2/165 (1%)
Query: 392 RSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFH 450
+ + C CG+ F + L HQ H K +KC +C +SF +KK L +H H K +
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 451 CPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC 510
CP+C K F ++L+ H H + + C C K F AHL H H + + C C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 511 HLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKI 555
+F+ +++L H R+H + C CG+ F L H +
Sbjct: 140 GKSFSREDNLHTHQRTHTG-EKPYKCPECGKSFSRRDALNVHQRT 183
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 23 IQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
E+ +KC C KSF K ++ RH TH +K YKC C + + + NL+AH + H G
Sbjct: 45 TGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGE 103
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCP 142
K + C +C K+FS ++L H R H + +KCP
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHT--------------------------GEKPYKCP 137
Query: 143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 190
C + F+ E + H H E +KC +C K FS ++H R H
Sbjct: 138 ECGKSFSREDNLHTH-QRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 78/193 (40%), Gaps = 14/193 (7%)
Query: 232 FETKSTLVDHFFHHG-NPYMCNHCFLMFPDEKNL----RNHECTSCFTCPFCQRKYKIEK 286
F + S++ G PY C C F +L R H + CP C + + +K
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKK 63
Query: 287 HLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKV 346
L +H + P KC C + F L AH+ +HT EK Y C C K
Sbjct: 64 DLTRHQRTHTGEKP--------YKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKS 114
Query: 347 FKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESE 406
F + H H +KC C K++ E NL H TH + ++C CG+ F
Sbjct: 115 FSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174
Query: 407 ELLIVHQVIHERK 419
+ L VHQ H K
Sbjct: 175 DALNVHQRTHTGK 187
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 75/182 (41%), Gaps = 7/182 (3%)
Query: 94 FSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSET 152
F S++++ E C C + F + L EH ++H + +KCP C + F+ +
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKK 63
Query: 153 RMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMR 210
+ H H E +KC +C K FS H R H K Y C EC K F+ +R
Sbjct: 64 DLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 211 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHCFLMFPDEKNLRNHE 268
H R H E Y C C SF + L H H PY C C F L H+
Sbjct: 123 AHQRT-HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Query: 269 CT 270
T
Sbjct: 182 RT 183
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
E+ +KC C KSF SN+++H TH +K YKC C + + +L+ H + H G K
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 85 FTCAQCDKAFSLKSNLSKHVRHHM 108
+ C +C K+FS +LS+H R H
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 53 LQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENV 111
++K YKC C + + NL+ H + H G K + C +C K+FS S+L KH R H E
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 112 KQCKICLEIFEDDEVLEEHVKSHQNRR 138
+C C + F + L H ++HQN++
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 333 MEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRR 392
MEK YKC C K F +S++ KH H +KC C K++ +L +H TH +
Sbjct: 1 MEKP-YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 393 SFRCKSCGRRFESEELLIVHQVIHERK 419
++C CG+ F + L HQ H+ K
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTHQNK 86
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN 506
K + CP+C K F S+LQ H H + +KC C K F + L KH H + +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 507 CDFCHLTFTTDNDLIRHMRSHE 528
C C +F+ + L RH R+H+
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQ 84
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%)
Query: 419 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHK 478
K +KC +C +SF +L++H H K + CP+C K F S LQ H H + +K
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 479 CLYCFKVFVHKAHLDKHLILHE 500
C C K F HL +H H+
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQ 84
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 139 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRC 196
+KCP C + F+ + ++ H H E +KC +C K FS H R H K Y+C
Sbjct: 5 YKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 197 SECEKRFATEDIMRQHFRNYHNKE 220
EC K F+ D + +H R + NK+
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCH 369
KC C + F L H+ +HT EK YKC C K F +S+ KH H +KC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 370 LCTKAYPSEKNLDRHLLTHNVRR 392
C K++ +L RH TH ++
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 165 ENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDA 222
E +KC +C K FS H R H K Y+C EC K F+ +++H R H E
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEKP 60
Query: 223 YVCNYCYDSFETKSTLVDHFFHHGN 247
Y C C SF L H H N
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 192 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PY 249
K Y+C EC K F+ +++H R H E Y C C SF S L H H PY
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 250 MCNHCFLMFPDEKNLRNHECT 270
C C F +L H+ T
Sbjct: 62 KCPECGKSFSRSDHLSRHQRT 82
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 449 FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCD 508
F C C K F+ S L H+++H ++ + C YC K F K+ + KH +H + H C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 509 FCHLTFTTDNDLIRHMRSH 527
C F+ ++LI H R H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 28 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
F C++C KSF S + H+ H + Y C+ C + + K ++K H +H G K C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 88 AQCDKAFSLKSNLSKHVRHH 107
C KAFS SNL H R H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%)
Query: 423 CTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYC 482
C C +SFK L HLL H + + C C K F +S ++ H +H + HKC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 483 FKVFVHKAHLDKH 495
K F ++L H
Sbjct: 64 GKAFSQSSNLITH 76
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 338 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCK 397
+ C C K FK+S++ H+ H+ + C C K + + ++ +H H + +C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 398 SCGRRFESEELLIVHQVIH 416
CG+ F LI H H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 393 SFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
SF CK CG+ F+ L H +IH + + + C C + F K +K+H H K C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 452 PKCPKLFRHESHLQNHVIVH 471
C K F S+L H H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 114 CKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKK 172
CKIC + F+ L H+ H + R + C C + F ++ M+ H + H E KC+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHKCQV 62
Query: 173 CLKVFSDEIKFHLHGRAHA 191
C K FS H R H
Sbjct: 63 CGKAFSQSSNLITHSRKHT 81
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 26 RKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 81
R + C+ C K F KS++++H H +K +KC++C + + NL H + H G
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 168 FKCKKCLKVF--SDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 225
F CK C K F S + HL + + Y C C KRF + M++H H E + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60
Query: 226 NYCYDSFETKSTLVDH 241
C +F S L+ H
Sbjct: 61 QVCGKAFSQSSNLITH 76
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMC 251
+ C C K F + H H+ Y C YC F KS + H F H P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 252 NHCFLMFPDEKNLRNHE 268
C F NL H
Sbjct: 61 QVCGKAFSQSSNLITHS 77
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 273 FTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHT 332
F C C + +K L H+ P C+YC + F + + H HT
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP--------YPCQYCGKRFHQKSDMKKHTFIHT 53
Query: 333 MEKTLYKCLYCHKVFKKSTSFDKHMEHHN 361
EK +KC C K F +S++ H H
Sbjct: 54 GEKP-HKCQVCGKAFSQSSNLITHSRKHT 81
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 536 CDICGEKFINDLKLKAHIKIIHN---LFTCIHCGDTLNNAKDYASHLLIIHNIESS---Q 589
C ICG+ F L H+ +IH+ + C +CG + D H IH E Q
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQ 61
Query: 590 QVEKNLNNMYNLLT 603
K + NL+T
Sbjct: 62 VCGKAFSQSSNLIT 75
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 333 MEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNV 390
ME C + C K+F+ +++ KH+ H V H C C KA+ L RH L H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRV-HVCAECGKAFVESSKLKRHQLVHTG 59
Query: 391 RRSFRC--KSCGRRFESEELLIVHQVIHER-KFHKCT--QCEESFKNKKHLKQHLLAHEK 445
+ F+C + CG+RF + L H IH + + C C + F +LK H+L H K
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Query: 446 VK 447
K
Sbjct: 120 AK 121
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 60 KLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKH-VRHHMENVKQCKI-- 116
K C +M+R ++ HL H GP++ CA+C KAF S L +H + H E QC
Sbjct: 11 KGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 117 CLEIFEDDEVLEEHVKSH-QNRRFKCP--CCERIFTSETRMRNHI 158
C + F D L HV+ H +R + CP C + F T +++HI
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ CP C K+FR S ++ H+ H VH C C K FV + L +H ++H +
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 505 HNCDF--CHLTFTTDNDLIRHMRSHEEYHTKHTC--DICGEKFINDLKLKAHI 553
C F C F+ D +L H+R H + C D C +KF LK+HI
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTG-DRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 397 KSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCP--KC 454
K C + F + H H + H C +C ++F LK+H L H K F C C
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 455 PKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSE 503
K F + +L+ HV +H + C + C K F +L H++ H ++
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 30 CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTC 87
C C K+F S ++RH H +K ++C C + + +NL+ H+++H G + + C
Sbjct: 37 CAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 88 A--QCDKAFSLKSNLSKHVRHHME 109
C+K F+ +NL H+ H +
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHAK 119
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 23 IQERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHK 80
++ R C + C K F S +R+H+ TH + + C C + + LK H +H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLH-THG-PRVHVCAECGKAFVESSKLKRHQLVHT 58
Query: 81 GPKIFTCA--QCDKAFSLKSNLSKHVRHHMEN---VKQCKICLEIFEDDEVLEEHVKSH 134
G K F C C K FSL NL HVR H + V C + F L+ H+ +H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 311 CRYCQRMFRNEDKLTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKC 368
C C + F KL H+L HT EK ++C + C K F + H+ H + + C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 369 HL--CTKAYPSEKNLDRHLLTH 388
C K + NL H+LTH
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTH 117
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 171 KKCLKVFSDEIKFHLHGRAHA-KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY-- 227
K C K+F D H H + + C+EC K F +++H + H E + C +
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEG 69
Query: 228 CYDSFETKSTLVDHF-FHHGN-PYMC--NHCFLMFPDEKNLRNHECT 270
C F L H H G+ PY+C + C F NL++H T
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
ER + C E C + F K+N+ H+ H QK ++C++C R + + +L AH++ H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHME 109
K F C C + F+ ++H + H+
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLR 87
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
C + F + T+ D H+ H +C +C + + + +L+ H+ TH + F C CGR+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 403 FESEELLIVHQVIHERK 419
F + H IH R+
Sbjct: 72 FATLHTRTRHTKIHLRQ 88
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 90 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 147
CD+ FS K+NL H+R H + QC+IC+ F L H+++H + F C C R
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 148 F-TSETRMR 155
F T TR R
Sbjct: 72 FATLHTRTR 80
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ + CP C + F +++L H+ +H + +C C + F +A L+ H+ H +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 505 HNCDFCHLTFTTDNDLIRHMRSH 527
CD C F T + RH + H
Sbjct: 63 FACDICGRKFATLHTRTRHTKIH 85
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 137 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--K 192
R + CP C+R F+ +T + HI + H + F+C+ C++ FS + + H R H K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 193 FYRCSECEKRFAT 205
+ C C ++FAT
Sbjct: 62 PFACDICGRKFAT 74
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
C + F K +LD H+ +H + C C F+ L H+R+H CDICG
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
KF H KI
Sbjct: 71 KFATLHTRTRHTKI 84
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKV 485
C+ F K +L H+ H K F C C + F ++ L H+ H + C C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 486 FVHKAHLDKHLILH 499
F +H +H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 273 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 330
+ CP C R++ + +L+ HI P +CR C R F + L AH +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPF--------QCRICMRNFSQQASLNAHIRT 56
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNR 362
HT EK + C C + F + +H + H R
Sbjct: 57 HTGEKP-FACDICGRKFATLHTRTRHTKIHLR 87
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 392 RSFRC--KSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKV 448
R + C +SC RRF + L H IH +K +C C +F + L H+ H K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 449 FHCPKCPKLF 458
F C C + F
Sbjct: 63 FACDICGRKF 72
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 49 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HH 107
+ +KC++C + + K LK H++ H G K + C CD A + S+L+KH+R H
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 108 MENVKQCKICLEIFEDDEVLEEHVKSHQN 136
E +C+IC + L H++SH
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 20 GKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 79
G S KCE+C K F K ++ HM H K YKCK C +L HL++H
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Query: 80 KGPKIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
+ F C C A S L+ H+R H +
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%)
Query: 421 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCL 480
HKC C + F K LK H+ H VK + C C S L H+ +H + KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 481 YCFKVFVHKAHLDKHLILH 499
C + + L HL H
Sbjct: 69 ICPYASRNSSQLTVHLRSH 87
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%)
Query: 338 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCK 397
+KC C K F + HM H +KC C A +L++HL H+ R F+C+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 398 SCGRRFESEELLIVHQVIH 416
C + L VH H
Sbjct: 69 ICPYASRNSSQLTVHLRSH 87
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 395 RCKSCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 453
+C+ CG+ F ++ L H H K +KC C+ + + L +HL H + F C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 454 CPKLFRHESHLQNHVIVH 471
CP R+ S L H+ H
Sbjct: 70 CPYASRNSSQLTVHLRSH 87
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%)
Query: 451 CPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC 510
C C K F + L+ H+ H + +KC C + L+KHL +H C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 511 HLTFTTDNDLIRHMRSH 527
+ L H+RSH
Sbjct: 71 PYASRNSSQLTVHLRSH 87
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 113 QCKICLEIFEDDEVLEEHVKSHQN-RRFKCPCCERIFTSETRMRNHIDMKHADENLFKCK 171
+C++C + F + L+ H++ H + +KC C+ + + H+ + H+DE FKC+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQ 68
Query: 172 KCLKVFSDEIKFHLHGRAH 190
C + + +H R+H
Sbjct: 69 ICPYASRNSSQLTVHLRSH 87
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 472 DESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYH 531
S HKC C K F K L H+ H + + C C + L +H+R H +
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD-E 62
Query: 532 TKHTCDICGEKFINDLKLKAHIK 554
C IC N +L H++
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLR 85
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 163 ADENLFKCKKCLKVFS--DEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKE 220
KC+ C K FS D++K H+ K Y+C C+ A + +H R H+ E
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDE 62
Query: 221 DAYVCNYCYDSFETKSTLVDHFFHH 245
+ C C + S L H H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSH 87
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
ER + C E C + F SN+ RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 90 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 147
CD+ FS SNL++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 148 FTSETRMRNHIDM 160
F + H +
Sbjct: 72 FARSDERKRHTKI 84
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
C + F ++L +H+ +H + C C F+ + L H+R+H CDICG
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
KF + K H KI
Sbjct: 71 KFARSDERKRHTKI 84
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ + CP C + F S+L H+ +H + +C C + F HL H+ H +
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 505 HNCDFCHLTFTTDNDLIRHMRSH 527
CD C F ++ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
C + F S++ +H+ H +C +C + + +L H+ TH + F C CGR+
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 403 FESEELLIVHQVIHERK 419
F + H IH R+
Sbjct: 72 FARSDERKRHTKIHLRQ 88
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 137 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 192
R + CP C+R F+ + + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 193 FYRCSECEKRFATEDIMRQHFRNYHNKED 221
+ C C ++FA D ++H + + ++D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 273 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 330
+ CP C R++ +L +HI T K Q CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIR-------IHTGQKPFQ-CRICMRNFSRSDHLTTHIRT 56
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRN 363
HT EK + C C + F +S +H + H R
Sbjct: 57 HTGEKP-FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKV 485
C+ F + +L +H+ H K F C C + F HL H+ H + C C +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 486 FVHKAHLDKHLILH 499
F +H +H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 397 KSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCP 455
+SC RRF L H IH +K +C C +F HL H+ H K F C C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 456 KLFRHESHLQNHVIVH 471
+ F + H +H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 14/94 (14%)
Query: 248 PYMC--NHCFLMFPDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPT 301
PY C C F D NL R H F C C R + HL HI + P
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 302 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK 335
C C R F D+ H H +K
Sbjct: 64 A--------CDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 22 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 81
S ++ + C+ C KSF HKS RHM+ H + Y C +C + ++ K +L H+K+H G
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 82 PKIFTCAQCDKAFSLKSNLSKHV 104
K + C C K F + + +HV
Sbjct: 63 IKPYECNICAKRFMWRDSFHRHV 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 419 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHK 478
K + C QC +SF +K +H+ H ++ + C C K F+ + HL H+ +H + ++
Sbjct: 9 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 479 CLYCFKVFVHKAHLDKHLI 497
C C K F+ + +H+
Sbjct: 68 CNICAKRFMWRDSFHRHVT 86
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
C K F HK+ D+H+ +H + C C F + L+ HM+ H + C+IC +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI-KPYECNICAK 73
Query: 542 KFI 544
+F+
Sbjct: 74 RFM 76
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN 506
K++ C +C K F H+S H+ +H + C C K F K HL H+ +H + +
Sbjct: 9 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 507 CDFCHLTFTTDNDLIRHMRS 526
C+ C F + RH+ S
Sbjct: 68 CNICAKRFMWRDSFHRHVTS 87
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK-- 112
K Y C+ C + + +K H+ MH G + + C C K F +K +L H++ H +K
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT-GIKPY 66
Query: 113 QCKICLEIFEDDEVLEEHVKS 133
+C IC + F + HV S
Sbjct: 67 ECNICAKRFMWRDSFHRHVTS 87
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 337 LYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRC 396
LY C C K F + D+HM H + C +C K + + +L H+ H + + C
Sbjct: 10 LYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 397 KSCGRRF 403
C +RF
Sbjct: 69 NICAKRF 75
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 187 GRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHH 245
G + K Y C +C K F T R + H Y C C F+ K LV H H
Sbjct: 4 GSSGDKLYPC-QCGKSF-THKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 246 G-NPYMCNHCFLMFPDEKNLRNHECTSC 272
G PY CN C F + H TSC
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRH-VTSC 88
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 142 PC-CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGR----AHAKFYRC 196
PC C + FT +++ H+ M H + C C K F ++K HL G K Y C
Sbjct: 12 PCQCGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKF--KMKHHLVGHMKIHTGIKPYEC 68
Query: 197 SECEKRFATEDIMRQH 212
+ C KRF D +H
Sbjct: 69 NICAKRFMWRDSFHRH 84
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
ER + C E C + F K+N+ H+ H QK ++C++C R + L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHME 109
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLR 87
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 90 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 147
CD+ FS K+NL H+R H + QC+IC+ F L +H+++H + F C C R
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 148 FTS 150
F +
Sbjct: 72 FAT 74
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
C + F + T+ D H+ H +C +C + + L++H+ TH + F C CGR+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 403 FESEELLIVHQVIHERK 419
F + H IH R+
Sbjct: 72 FATLHTRDRHTKIHLRQ 88
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 137 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--K 192
R + CP C+R F+ +T + HI + H + F+C+ C++ FS + H R H K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 193 FYRCSECEKRFATEDIMRQHFRNYHNK 219
+ C C ++FAT H R+ H K
Sbjct: 62 PFACDICGRKFAT-----LHTRDRHTK 83
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
C + F K +LD H+ +H + C C F+ L +H+R+H CDICG
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
KF H KI
Sbjct: 71 KFATLHTRDRHTKI 84
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ + CP C + F +++L H+ +H + +C C + F L++H+ H +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 505 HNCDFCHLTFTTDNDLIRHMRSH 527
CD C F T + RH + H
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKV 485
C+ F K +L H+ H K F C C + F + L H+ H + C C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 486 FVHKAHLDKHLILH 499
F D+H +H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 392 RSFRC--KSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKV 448
R + C +SC RRF + L H IH +K +C C +F L QH+ H K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 449 FHCPKCPKLF 458
F C C + F
Sbjct: 63 FACDICGRKF 72
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 273 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 330
+ CP C R++ + +L+ HI P +CR C R F L H +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPF--------QCRICMRNFSQHTGLNQHIRT 56
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNR 362
HT EK + C C + F + D+H + H R
Sbjct: 57 HTGEKP-FACDICGRKFATLHTRDRHTKIHLR 87
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 59 CKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKH-VRHHM---ENVKQC 114
C C + + K+ LK H + H G K F C +C K + K NL +H R+ M E V C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 115 KICLEIFEDDEVLEEHVKSHQNR-RFKCPCCERIFTSETRMRNHIDMKHADEN 166
+C E F L H+ SH +KC C + F + +++H+ H+ +
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 423 CTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPK-LFRHESHLQNHV--IVHDESEVHKC 479
C C + F +K +LK H H K F CPKC K FR E+ L++ ++ +V C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 480 LYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM 524
C + F + L H++ H + C C F DL HM
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 368 CHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH----ERKFHKC 423
C C K + S+ L H H + F C CG+ + +E L+ H+ + + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 424 TQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVI 469
+ C+E+F+ + L+ H+++H + C C + F + LQ+H+I
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 396 CKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLL---AHEKVKVFH 450
C +C ++F S+ L VH H E+ F +C +C + + K++L +H + +VF
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPF-ECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 451 CPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI 497
C C + FR L+ H++ H +KC C + F+ K L H+I
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 21 KSIQERKFKCEMCPKSFDHKSNIRRHMA--ATHDLQKKYKCKLCARMYRYKWNLKAHLKM 78
K E+ F+C C K + K N+ H A + ++ + C +C +R + L+ H+
Sbjct: 29 KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS 88
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHV 104
H G + C+ C + F K +L H+
Sbjct: 89 HTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 340 CLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRS---FRC 396
C CHK F H H +C C K Y ++NL H + + RS F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 397 KSCGRRFESEELLIVHQVIHERKF-HKCTQCEESFKNKKHLKQHLL 441
C F L +H V H + +KC+ C + F KK L+ H++
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 270 TSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHEL 329
+S CP C +K+ + +L+ H N T K + C C + + ++ L HE
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVH-------NRKHTGEKPFE-CPKCGKCYFRKENLLEHEA 56
Query: 330 SHTMEKT--LYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLL 386
+ M ++ ++ C C + F++ HM H + +KC C++ + +K+L H++
Sbjct: 57 RNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 311 CRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHK--- 367
C C + F ++ L H HT EK ++C C K + + + +EH RN +++
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENL---LEHEARNCMNRSEQ 65
Query: 368 ---CHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQV 414
C +C + + L H+++H ++C SC ++F ++ L H +
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 479 CLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM------RSHEEYHT 532
C C K F+ K +L H H + C C + +L+ H RS + +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF-- 67
Query: 533 KHTCDICGEKFINDLKLKAHIKIIHN---LFTCIHCGDTLNNAKDYASHLLIIHNIESS 588
TC +C E F ++L+ H+ + H + C C KD SH++ +H+ SS
Sbjct: 68 --TCSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 113 QCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNH--IDMKHADENLFK 169
+C C + F L+ H + H + F+CP C + + + + H + + E +F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 170 CKKCLKVFSDEIKFHLHGRAHAK--FYRCSECEKRFATEDIMRQHFRNYHNKEDA 222
C C + F ++ LH +H Y+CS C ++F + ++ H H+ +
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 49/142 (34%), Gaps = 32/142 (22%)
Query: 218 NKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHCFLMFPDEKNLRNHECTSCFTC 275
+ C C+ F +K L H H P+ C C + ++NL HE +C
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC--- 59
Query: 276 PFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK 335
+N + V C CQ FR +L H +SHT E
Sbjct: 60 ----------------------MNRSEQVF----TCSVCQETFRRRMELRLHMVSHTGEM 93
Query: 336 TLYKCLYCHKVFKKSTSFDKHM 357
YKC C + F + HM
Sbjct: 94 P-YKCSSCSQQFMQKKDLQSHM 114
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
ER + C E C + F ++ RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
C + F +S S +H+ H +C +C + + +L H+ TH + F C CGR+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 403 FESEELLIVHQVIHERK 419
F + H IH R+
Sbjct: 72 FARSDERKRHTKIHLRQ 88
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
C + F L +H+ +H + C C F+ + L H+R+H CDICG
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
KF + K H KI
Sbjct: 71 KFARSDERKRHTKI 84
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 90 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 147
CD+ FS +L++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 148 FTSETRMRNHIDM 160
F + H +
Sbjct: 72 FARSDERKRHTKI 84
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ + CP C + F L H+ +H + +C C + F HL H+ H +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 505 HNCDFCHLTFTTDNDLIRHMRSH 527
CD C F ++ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 137 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 192
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 193 FYRCSECEKRFATEDIMRQHFRNYHNKED 221
+ C C ++FA D ++H + + ++D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 273 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 330
+ CP C R++ L +HI T K Q CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR-------IHTGQKPFQ-CRICMRNFSRSDHLTTHIRT 56
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRN 363
HT EK + C C + F +S +H + H R
Sbjct: 57 HTGEKP-FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 398 SCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPK 456
SC RRF L H IH +K +C C +F HL H+ H K F C C +
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 457 LFRHESHLQNHVIVH 471
F + H +H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%)
Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKV 485
C+ F L +H+ H K F C C + F HL H+ H + C C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 486 FVHKAHLDKHLILH 499
F +H +H
Sbjct: 72 FARSDERKRHTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
ER + C E C + F +++ RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
C + F A L +H+ +H + C C F+ + L H+R+H CDICG
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
KF + K H KI
Sbjct: 71 KFARSDERKRHTKI 84
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 90 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 147
CD+ FS ++L++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 148 FTSETRMRNHIDM 160
F + H +
Sbjct: 72 FARSDERKRHTKI 84
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
C + F +S +H+ H +C +C + + +L H+ TH + F C CGR+
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 403 FESEELLIVHQVIHERK 419
F + H IH R+
Sbjct: 72 FARSDERKRHTKIHLRQ 88
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ + CP C + F + L H+ +H + +C C + F HL H+ H +
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 505 HNCDFCHLTFTTDNDLIRHMRSH 527
CD C F ++ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 273 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 330
+ CP C R++ L +HI T K Q CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIR-------IHTGQKPFQ-CRICMRNFSRSDHLTTHIRT 56
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRN 363
HT EK + C C + F +S +H + H R
Sbjct: 57 HTGEKP-FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 137 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 192
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 193 FYRCSECEKRFATEDIMRQHFRNYHNKED 221
+ C C ++FA D ++H + + ++D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 398 SCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPK 456
SC RRF L H IH +K +C C +F HL H+ H K F C C +
Sbjct: 11 SCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 457 LFRHESHLQNHVIVH 471
F + H +H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%)
Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKV 485
C+ F L +H+ H K F C C + F HL H+ H + C C +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 486 FVHKAHLDKHLILH 499
F +H +H
Sbjct: 72 FARSDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
ER + C E C + F + + RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
C + F A L +H+ +H + C C F+ + L H+R+H CDICG
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
KF + K H KI
Sbjct: 71 KFARSDERKRHTKI 84
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 90 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 147
CD+ FS + L++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 148 FTSETRMRNHIDM 160
F + H +
Sbjct: 72 FARSDERKRHTKI 84
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
C + F +S +H+ H +C +C + + +L H+ TH + F C CGR+
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 403 FESEELLIVHQVIHERK 419
F + H IH R+
Sbjct: 72 FARSDERKRHTKIHLRQ 88
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ + CP C + F + L H+ +H + +C C + F HL H+ H +
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 505 HNCDFCHLTFTTDNDLIRHMRSH 527
CD C F ++ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 273 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 330
+ CP C R++ L +HI T K Q CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIR-------IHTGQKPFQ-CRICMRNFSRSDHLTTHIRT 56
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRN 363
HT EK + C C + F +S +H + H R
Sbjct: 57 HTGEKP-FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 137 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 192
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 193 FYRCSECEKRFATEDIMRQHFRNYHNKED 221
+ C C ++FA D ++H + + ++D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 398 SCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPK 456
SC RRF L H IH +K +C C +F HL H+ H K F C C +
Sbjct: 11 SCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 457 LFRHESHLQNHVIVH 471
F + H +H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%)
Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKV 485
C+ F L +H+ H K F C C + F HL H+ H + C C +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 486 FVHKAHLDKHLILH 499
F +H +H
Sbjct: 72 FARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
ER + C E C + F + RH+ H QK ++C++C R + +L H++ H G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
K F C C + F+ +H + H+
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
C + F L +H+ +H + C C F+ + L H+R+H CDICG
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGR 69
Query: 542 KFINDLKLKAHIKI 555
KF + K H KI
Sbjct: 70 KFARSDERKRHTKI 83
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 90 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 147
CD+ FS L++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 148 FTSETRMRNHIDM 160
F + H +
Sbjct: 71 FARSDERKRHTKI 83
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
C + F +S +H+ H +C +C + + +L H+ TH + F C CGR+
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 403 FESEELLIVHQVIHERK 419
F + H IH R+
Sbjct: 71 FARSDERKRHTKIHLRQ 87
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ + CP C + F L H+ +H + +C C + F HL H+ H +
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 505 HNCDFCHLTFTTDNDLIRHMRSH 527
CD C F ++ RH + H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 273 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 330
+ CP C R++ L +HI T K Q CR C R F D LT H +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIR-------IHTGQKPFQ-CRICMRNFSRSDHLTTHIRT 55
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRN 363
HT EK + C C + F +S +H + H R
Sbjct: 56 HTGEKP-FACDICGRKFARSDERKRHTKIHLRQ 87
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 397 KSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCP 455
+SC RRF + L H IH +K +C C +F HL H+ H K F C C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 456 KLFRHESHLQNHVIVH 471
+ F + H +H
Sbjct: 69 RKFARSDERKRHTKIH 84
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 137 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 192
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 193 FYRCSECEKRFATEDIMRQH 212
+ C C ++FA D ++H
Sbjct: 61 PFACDICGRKFARSDERKRH 80
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%)
Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKV 485
C+ F L +H+ H K F C C + F HL H+ H + C C +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 486 FVHKAHLDKHLILH 499
F +H +H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 199 CEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHCFL 256
C++RF+ D + +H R H + + C C +F L H H P+ C+ C
Sbjct: 11 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 257 MFPDEKNLRNH 267
F + H
Sbjct: 70 KFARSDERKRH 80
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 178 SDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 232
SDE+ H+ K ++C C + F+ D + H R H E + C+ C F
Sbjct: 18 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKF 71
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
ER + C E C + F + RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHM 108
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNR 137
H+ P CD+ FS L++H+R H + QC+IC+ F + L H+++H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 138 R-FKCPCCERIFTSETRMRNHIDM 160
+ F C C R F + H +
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
C + F L +H+ +H + C C F+ + L H+R+H CDICG
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
KF + K H KI
Sbjct: 71 KFARSDERKRHTKI 84
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
C + F +S +H+ H +C +C + + +L H+ TH + F C CGR+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 403 FESEELLIVHQVIHER 418
F + H IH R
Sbjct: 72 FARSDERKRHTKIHLR 87
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ + CP C + F L H+ +H + +C C + F HL H+ H +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 505 HNCDFCHLTFTTDNDLIRHMRSH 527
CD C F ++ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 273 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 330
+ CP C R++ L +HI T K Q CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR-------IHTGQKPFQ-CRICMRNFSRSDHLTTHIRT 56
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNR 362
HT EK + C C + F +S +H + H R
Sbjct: 57 HTGEKP-FACDICGRKFARSDERKRHTKIHLR 87
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 397 KSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCP 455
+SC RRF + L H IH +K +C C +F HL H+ H K F C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 456 KLFRHESHLQNHVIVH 471
+ F + H +H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 137 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 192
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 193 FYRCSECEKRFATEDIMRQH 212
+ C C ++FA D ++H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 416 HERKFH-KCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDES 474
HER + C+ F L +H+ H K F C C + F HL H+ H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 475 EVHKCLYCFKVFVHKAHLDKHLILH 499
+ C C + F +H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 190 HAKFYRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN 247
H + Y C C++RF+ D + +H R H + + C C +F L H H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 248 --PYMCNHCFLMFPDEKNLRNH 267
P+ C+ C F + H
Sbjct: 60 EKPFACDICGRKFARSDERKRH 81
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 371 CTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEE 428
C + + L RH+ H ++ F+C+ C R F + L H H E+ F C C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF-ACDICGR 70
Query: 429 SFKNKKHLKQHLLAH 443
F K+H H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 178 SDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 232
SDE+ H+ K ++C C + F+ D + H R H E + C+ C F
Sbjct: 19 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKF 72
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
ER + C E C + F + RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
K F C C + F+ +H + H+
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
C + F L +H+ +H + C C F+ + L H+R+H CDICG
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
KF + K H KI
Sbjct: 71 KFARSDERKRHTKI 84
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
C + F +S +H+ H +C +C + + +L H+ TH + F C CGR+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 403 FESEELLIVHQVIHERK 419
F + H IH R+
Sbjct: 72 FARSDERKRHTKIHLRQ 88
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 90 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 147
CD+ FS L++H+R H + QC+IC+ F + L H+++H + F C C R
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 148 FTSETRMRNHIDM 160
F + H +
Sbjct: 72 FARSDERKRHTKI 84
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ + CP C + F L H+ +H + +C C + F HL H+ H +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 505 HNCDFCHLTFTTDNDLIRHMRSH 527
CD C F ++ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 273 FTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 330
+ CP C R++ L +HI T K Q CR C R F D LT H +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR-------IHTGQKPFQ-CRICMRNFSRSDHLTTHIRT 56
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRN 363
HT EK + C C + F +S +H + H R
Sbjct: 57 HTGEKP-FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 397 KSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCP 455
+SC RRF + L H IH +K +C C +F HL H+ H K F C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 456 KLFRHESHLQNHVIVH 471
+ F + H +H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 137 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAK 192
R + CP C+R F+ + HI + H + F+C+ C++ FS D + H+ K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 193 FYRCSECEKRFATEDIMRQHFRNYHNKED 221
+ C C ++FA D ++H + + ++D
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%)
Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKV 485
C+ F L +H+ H K F C C + F HL H+ H + C C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 486 FVHKAHLDKHLILH 499
F +H +H
Sbjct: 72 FARSDERKRHTKIH 85
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 62 CARMYRYKWNLKAHLKMHKGPKIFTCA--QCDKAFSLKSNLSKHVRHHMENVK-QCKICL 118
C ++Y +LKAHL+ H G K + C CD F+ L++H R H QC +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 119 EIFEDDEVLEEHVKSHQN 136
F + L H+K HQN
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 444 EKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILH 499
EK ++ +C P C K++ SHL+ H+ H + +KC + C F L +H H
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 500 ETSEMHNCDFCHLTFTTDNDLIRHMRSHE 528
++ C C+ +F+ + L HM+ H+
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 33 CPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWN--LKAHLKMHKGPKIFTCAQC 90
C K + S+++ H+ TH +K YKC +R+ + L H + H G K F C C
Sbjct: 23 CTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 91 DKAFSLKSNLSKHVRHH 107
+++FS +L+ H++ H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 371 CTKAYPSEKNLDRHLLTHNVRRSFRC--KSCGRRFESEELLIVHQVIH-ERKFHKCTQCE 427
CTK Y +L HL TH + ++C + C RF + L H H K +C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 428 ESFKNKKHLKQHLLAHE 444
SF HL H+ H+
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRCKSCG 400
C KV+ KS+ H+ H +KC C + L RH H + F+C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 401 RRFESEELLIVHQVIHE 417
R F + L +H H+
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 142 PCCERIFTSETRMRNHIDMKHADENLFKC--KKCLKVF--SDEIKFHLHGRAHAKFYRCS 197
P C +++T + ++ H+ H E +KC + C F SDE+ H AK ++C
Sbjct: 21 PGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG 79
Query: 198 ECEKRFATEDIMRQHFRNYHN 218
C + F+ D + H + + N
Sbjct: 80 VCNRSFSRSDHLALHMKRHQN 100
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCHLC 371
C +++ L AH +HT EK YKC + C F +S +H H +C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 372 TKAYPSEKNLDRHLLTH 388
+++ +L H+ H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 386 LTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHE 444
L ++ F CK CGR F L++H+ H + + + C C ++F+ + HL+ H H
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 445 KVKVFHCPKCPKLFRHESHLQNHVIVHDESE 475
K K F C +C K F L H +H ++
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVHKTLHMQTS 100
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 22 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 81
S +++F C+ C + F N+ H TH ++ Y C +C + +R + +L+ H +H
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 82 PKIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
K F C +C K F L+ H HM+
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 338 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCK 397
+ C +C + F KS + H H + C +C KA+ + +L H H+ + F+C+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 398 SCGRRFESEELLIVHQVIH 416
CG+ F L VH+ +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 507 CDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN---LFTCI 563
C FC FT +L+ H R+H + +TCDIC + F L+ H + IH+ F C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTD-ERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQ 77
Query: 564 HCGDTLNNAKDYASH 578
CG ++ A H
Sbjct: 78 ECGKGFCQSRTLAVH 92
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 368 CHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQC 426
C C + + NL H TH R + C C + F ++ L H+ IH + K KC +C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 427 EESFKNKKHLKQHLLAH 443
+ F + L H H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 114 CKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKK 172
CK C F L H ++H + R + C C + F + +R+H + H+ E FKC++
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEKPFKCQE 78
Query: 173 CLKVFSDEIKFHLHGRAH 190
C K F +H H
Sbjct: 79 CGKGFCQSRTLAVHKTLH 96
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 273 FTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHT 332
F C FC R + +L H + P T C C + FR +D L H H+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYT--------CDICHKAFRRQDHLRDHRYIHS 69
Query: 333 MEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
EK +KC C K F +S + H H
Sbjct: 70 KEKP-FKCQECGKGFCQSRTLAVHKTLH 96
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 131 VKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVF--SDEIKFHLHGR 188
+ S + F C C R FT + H + H DE + C C K F D ++ H +
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 189 AHAKFYRCSECEKRFATEDIMRQH 212
+ K ++C EC K F + H
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVH 92
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 479 CLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKH---T 535
C +C + F +L H H + CD CH F + H+R H H+K
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD----HLRDHRYIHSKEKPFK 75
Query: 536 CDICGEKFINDLKLKAH 552
C CG+ F L H
Sbjct: 76 CQECGKGFCQSRTLAVH 92
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 196 CSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHG--NPYMCNH 253
C C + F + H R H E Y C+ C+ +F + L DH + H P+ C
Sbjct: 20 CKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 254 CFLMFPDEKNLRNHE 268
C F + L H+
Sbjct: 79 CGKGFCQSRTLAVHK 93
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 80 KGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSH-QNR 137
K K F C C + F+ NL H R H E C IC + F + L +H H + +
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 138 RFKCPCCERIF 148
FKC C + F
Sbjct: 73 PFKCQECGKGF 83
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 479 CLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTK-HTCD 537
C C K+F HL++H + H + ++C C L F + + H+RSH+ K + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 538 ICGEKFINDLKLKAHIKIIHN 558
CG+ F L HIK +H+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHS 90
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 30 CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP--KIFTC 87
CE+C K F ++ RH +H +K Y C +C ++ K + H++ H G K + C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 88 AQCDKAFSLKSNLSKHVRH 106
C K FS +L+ H++
Sbjct: 69 QSCGKGFSRPDHLNGHIKQ 87
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 423 CTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDES--EVHKCL 480
C C + F++ HL +H L+H K + CP C F+ + + HV HD S + + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 481 YCFKVFVHKAHLDKHL 496
C K F HL+ H+
Sbjct: 70 SCGKGFSRPDHLNGHI 85
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 368 CHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHK---CT 424
C +C K + +L+RH L+H+ + + C CG RF+ ++ + H H+ K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 425 QCEESFKNKKHLKQHL 440
C + F HL H+
Sbjct: 70 SCGKGFSRPDHLNGHI 85
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 59 CKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQ---CK 115
C++C +++R ++L H H G K ++C C F K +S HVR H +V + C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 116 ICLEIFEDDEVLEEHVK 132
C + F + L H+K
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 311 CRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNV--LHKC 368
C C ++FR+ L H+LSH+ EK Y C C FK+ H+ H+ +V + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 369 HLCTKAYPSEKNLDRHL 385
C K + +L+ H+
Sbjct: 69 QSCGKGFSRPDHLNGHI 85
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 141 CPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH----AKFYRC 196
C C +IF + H + H+ E + C C F + + H R+H K Y C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 197 SECEKRFATEDIMRQHFRNYHN 218
C K F+ D + H + H+
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHS 90
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 396 CKSCGRRFESEELLIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKV--KVFHCP 452
C+ CG+ F L H++ H K + C C FK K + H+ +H+ K + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 453 KCPKLFRHESHLQNHV 468
C K F HL H+
Sbjct: 70 SCGKGFSRPDHLNGHI 85
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 340 CLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHN--VRRSFRCK 397
C C K+F+ ++H H+ + C +C + + + H+ +H+ V + + C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 398 SCGRRFESEELLIVH 412
SCG+ F + L H
Sbjct: 70 SCGKGFSRPDHLNGH 84
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 87 CAQCDKAFSLKSNLSKH-VRHHMENVKQCKICLEIFEDDEVLEEHVKSHQ---NRRFKCP 142
C C K F +L++H + H E C +C F+ + + HV+SH + + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 143 CCERIFTSETRMRNHIDMKHA 163
C + F+ + HI H+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHS 90
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 27/100 (27%)
Query: 170 CKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY 227
C+ C K+F D + H +H+ K Y C C RF +D M H R++ D V
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH----DGSV--- 62
Query: 228 CYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNH 267
G PY+C C F +L H
Sbjct: 63 ------------------GKPYICQSCGKGFSRPDHLNGH 84
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
K YKC C +RYK NL +H +H G K + C C F+ +NL H R H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
++ +KC+ C SF +K N+ H H +K Y+C +C + NLK H ++H G K
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 419 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHD 472
K +KC +C+ SF+ K +L H H K + C C F ++L+ H +H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHE 500
K + C +C FR++ +L +H VH + ++C C F A+L H +H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHN 361
KC CQ FR + L +H+ HT EK Y+C C F + + H H+
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRIHS 69
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHE 417
+KC C ++ + NL H H + +RC CG +F L H IH
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 220 EDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNHCFLMFPDEKNLRNH 267
+ Y C+ C SF K L H H G PY CN C F NL+ H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 505 HNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKI 555
+ CD C +F +L H H + C+ICG +F LK H +I
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTG-EKPYRCNICGAQFNRPANLKTHTRI 67
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHE 528
+KC C F +K +L H +H + + C+ C F +L H R H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 192 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
K Y+C C+ F + + H + H E Y CN C F + L H
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH 64
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 24 QERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 81
+ R++KC+ C KSF H S++ +H TH +K YKC C + + + +L H ++H G
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 54 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
+++YKC C + + + +L H + H G K + C +C KAF +S+L H R H +
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 417 ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDES 474
ER+ +KC +C +SF + L +H H K + C +C K F SHL H VH S
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETS 502
+ + C +C K F H S L H H + +KC C K F+ ++HL H +H S
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+KC C K++ +L +H TH + ++C CG+ F LI H +H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 473 ESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
E +KC C K F H + L KH H + + CD C F + LI H R H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 507 CDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKI 555
CD C +F+ +DL +H R+H + CD CG+ FI L H ++
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTG-EKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 334 EKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHN 389
E+ YKC C K F S+ KH H +KC C KA+ +L H H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 391 RRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVF 449
RR ++C CG+ F L H+ H K +KC +C ++F + HL+ H +V
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ----RSHLIGHHRVHTG 71
Query: 450 HCP 452
P
Sbjct: 72 SGP 74
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 159 DMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNY 216
+ + + +KC +C K FS H R H K Y+C EC K F I R H +
Sbjct: 10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF----IQRSHLIGH 65
Query: 217 H 217
H
Sbjct: 66 H 66
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVF 347
KC C + F + L+ H +HT EK YKC C K F
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAF 56
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 135 QNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVF 177
+ RR+KC C + F+ + + H H E +KC +C K F
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAF 56
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 52 DLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-EN 110
D + Y C +C R Y +L+ H +H K + C C+K F L +KH HH E
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 111 VKQCKICLEIFEDDEVLEEHVKS 133
QC C + F + + + H+KS
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKS 100
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHE 528
++ D + C+ C + +V L +H +H + + C +C F L + HE
Sbjct: 15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP----LAEYRTKHE 70
Query: 529 EYHT---KHTCDICGEKFINDLKLKAHIKIIHN 558
+HT ++ C CG+ FIN + +HIK +H+
Sbjct: 71 IHHTGERRYQCLACGKSFINYQFMSSHIKSVHS 103
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 335 KTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSF 394
+ Y C+ C + + TS +H H+ + C C K +P + +H + H R +
Sbjct: 20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY 79
Query: 395 RCKSCGRRFESEELLIVH 412
+C +CG+ F + + + H
Sbjct: 80 QCLACGKSFINYQFMSSH 97
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 5 RRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCAR 64
R +V+++ ++ G+ + C +C +S+ +++RRH H +KKY C+ C +
Sbjct: 4 RMKVKHDDHYELIVDGRVY----YICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEK 58
Query: 65 MYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 105
++ H H G + + C C K+F +S H++
Sbjct: 59 VFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIK 99
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 364 VLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFH 421
V + C +C ++Y +L RH H+ + + C+ C + F E H++ H ER++
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY- 79
Query: 422 KCTQCEESFKNKKHLKQHL 440
+C C +SF N + + H+
Sbjct: 80 QCLACGKSFINYQFMSSHI 98
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 414 VIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDE 473
++ R ++ C C+ S+ L++H H K + C C K+F + H I H
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 474 SEVHKCLYCFKVFVHKAHLDKHL 496
++CL C K F++ + H+
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHI 98
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 139 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFS---DEIKFHLHGRAHAKFYR 195
+ C C+R + T +R H ++ H+ E + C+ C KVF K +H + Y+
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNI-HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR-YQ 80
Query: 196 CSECEKRFATEDIMRQHFRNYHNKEDA 222
C C K F M H ++ H+++ +
Sbjct: 81 CLACGKSFINYQFMSSHIKSVHSQDPS 107
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 311 CRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHL 370
C C+R + L H H+ EK Y C YC KVF + KH HH ++C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKK-YPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 371 CTKAYPSEKNLDRHL 385
C K++ + + + H+
Sbjct: 84 CGKSFINYQFMSSHI 98
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 179 DEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTL 238
D + + GR +Y C C++ + +R+HF N H+ E Y C YC F
Sbjct: 11 DHYELIVDGRV---YYICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYR 66
Query: 239 VDHFFHHGNP--YMCNHCFLMFPDEKNLRNH 267
H HH Y C C F + + + +H
Sbjct: 67 TKHEIHHTGERRYQCLACGKSFINYQFMSSH 97
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 451 CPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC 510
C C + + + L+ H +H + + C YC KVF + KH I H + C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 511 HLTFTTDNDLIRHMRS 526
+F + H++S
Sbjct: 85 GKSFINYQFMSSHIKS 100
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 43 IRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKS 98
+RRH +K +KC C + Y NLK HL+ H G K + C C KAFS S
Sbjct: 59 MRRHTG-----EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS 113
Query: 99 NLSKHVRHHMENVKQ--CKI--CLEIFEDDEVLEEHVKS 133
+ +KH N K CK+ C + + D L +HVK+
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 29 KCEMCPKSFDHKSNIRRHMAA--THDLQKKYKCKLCA-----RMYRYKWNLKAHLKMHKG 81
+ + C + FD + + H+ + H +K++ C R ++ ++ L H++ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 82 PKIFTCA--QCDKAFSLKSNLSKHVRHHM-ENVKQCK--ICLEIFEDDEVLEEHV-KSHQ 135
K C C K++S NL H+R H E C+ C + F + +H ++H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 136 NRRF---KCPCCERIFTSETRMRNHIDMKHA 163
N + K P C + +T + +R H+ H
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 426 CEESFKNKKHL-----KQHLLAHEKVKVFHCPKCPK---LFRHESHLQNHVIVHDESEVH 477
C + F +++ L +H+ K V H C + F+ + L H+ H + H
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 478 KCLY--CFKVFVHKAHLDKHLILHETSEMHNCD--FCHLTFTTDNDLIRHMRSHEEYHTK 533
KC + C K + +L HL H + + C+ C F+ +D +H
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 534 HTCDI--CGEKFINDLKLKAHIKIIHN 558
+ C + C +++ + L+ H+K +H
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 25 ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHK 80
E+ + CE C K+F + S+ +H TH +K Y CKL C + Y +L+ H+K
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Query: 81 G 81
G
Sbjct: 155 G 155
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 28/128 (21%)
Query: 345 KVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRC--KSCG 400
+ FK HM H HKC C K+Y +NL HL +H + + C + C
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Query: 401 RRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRH 460
+ F + HQ N+ H ++EK V P C K +
Sbjct: 107 KAFSNASDRAKHQ------------------NRTH------SNEKPYVCKLPGCTKRYTD 142
Query: 461 ESHLQNHV 468
S L+ HV
Sbjct: 143 PSSLRKHV 150
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 18/143 (12%)
Query: 117 CLEIFEDDEVLEEHVKS---HQNRR-FKC---PCCE--RIFTSETRMRNHIDMKHADENL 167
C + F+ E L H+ S H R+ F C C R F ++ + H+ +H E
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHTGEKP 67
Query: 168 FKC--KKCLKVFS--DEIKFHLHGRAHAKFYRCS--ECEKRFATEDIMRQHFRNYHNKED 221
KC + C K +S + +K HL K Y C C K F+ +H H+ E
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 222 AYVCNY--CYDSFETKSTLVDHF 242
YVC C + S+L H
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHV 150
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 187 GRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKE---DAYVCNYCYDSFETKSTLVDH 241
GR H K Y CS C+K F + ++ HF+ YH+ A+VC+ C +F ++T+ H
Sbjct: 7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI----FTCAQCDKAFSLKSNLSKH 103
TH +K Y C C + +R K L H K + P F C++C K F+ ++ +++H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 330 SHTMEKTLYKCLYCHKVFKKSTSFDKHME-HHNRNVLHK---CHLCTKAYPSEKNLDRH 384
+HT EK Y C +C K F++ D H + +H+ N + C C K + + RH
Sbjct: 9 THTGEKP-YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 72 LKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHMENVK--QCKICLEIFEDDEVL 127
L+ H + H G K + C C++ FS L +H R H VK QCK C F + L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-GVKPFQCKTCQRKFSRSDHL 82
Query: 128 EEHVKSHQNRR-FKC--PCCERIFTSETRMRNHIDM 160
+ H ++H + F C P C++ F + H +M
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 324 LTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNL 381
L H HT EK Y+C + C + F +S +H H +C C + + +L
Sbjct: 24 LQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHL 82
Query: 382 DRHLLTHNVRRSFRCK--SCGRRFESEELLIVHQVIH 416
H TH + F C+ SC ++F + L+ H +H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 391 RRSFRC--KSCGRRFESEELLIVHQVIH-ERKFHKC--TQCEESFKNKKHLKQHLLAHEK 445
+R F C C +R+ L +H H K ++C CE F LK+H H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 446 VKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILH 499
VK F C C + F HL+ H H + C + C K F L +H +H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 135 QNRRFKC--PCCERIFTSETRMRNHIDMKHADENLFKC--KKCLKVFS--DEIKFHLHGR 188
+ R F C P C + + + ++ H KH E ++C K C + FS D++K H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 189 AHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDH 241
K ++C C+++F+ D ++ H R H E + C + C F LV H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 22 SIQERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKC--KLCARMYRYKWNLKAHLK 77
+ ++R F C C K + S+++ H + H +K Y+C K C R + LK H +
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR 59
Query: 78 MHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIF-EDDEVLEEH 130
H G K F C C + FS +L H R H E C+ C + F DE++ H
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 265 RNHECTSCFTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNED 322
R H + C F C+R++ L++H + P +C+ CQR F D
Sbjct: 29 RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF--------QCKTCQRKFSRSD 80
Query: 323 KLTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHHN 361
L H +HT EK + C + C K F +S D+ + HHN
Sbjct: 81 HLKTHTRTHTGEKP-FSCRWPSCQKKFARS---DELVRHHN 117
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 479 CLY--CFKVFVHKAHLDKHLILHETSEMHNCDF--CHLTFTTDNDLIRHMRSHEEYHTKH 534
C Y C K + +HL H H + + CDF C F+ + L RH R H
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV-KPF 67
Query: 535 TCDICGEKFINDLKLKAHIKI 555
C C KF LK H +
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRT 88
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 14/138 (10%)
Query: 144 CERIFTSETRMRNHIDMKHADENLFKCKK--CLKVFSDEIKFHLHGRAHA--KFYRCSE- 198
C + +++ H+ KH E F CK+ C K F+ H H K + C
Sbjct: 20 CGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 199 -CEKRFATEDIMRQHFRNYHN-KEDAYVCNY--CYDSFETKSTLVDHFFHHGN--PYMCN 252
C+ RF T+ M++HF +HN K YVC++ C +F+ + L H F H PY C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 253 H--CFLMFPDEKNLRNHE 268
H C F L+ HE
Sbjct: 139 HEGCDKRFSLPSRLKRHE 156
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKC--HLCTKAYPSEKNLDRHLLTHNVRRSFRCKS-- 398
C + K+ H+ H C C K + S +L RH LTH ++F C S
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 399 CGRRFESEELLIVHQVIHERKFHKCT---------QCEESFKNKKHLKQHLLAHEKVKVF 449
C RF ++ + H +FH C ++FK LK H +H + +
Sbjct: 80 CDLRFTTK----ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPY 135
Query: 450 HCP--KCPKLFRHESHLQNHVIVH 471
CP C K F S L+ H VH
Sbjct: 136 ECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 11/165 (6%)
Query: 371 CTKAYPSEKNLDRHLLTHNVRRSFRCK--SCGRRFESEELLIVHQVIH--ERKFH-KCTQ 425
C AY L HL H + F CK C + F S L H + H E+ F
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 426 CEESFKNKKHLKQHLLAHEKVK----VFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY 481
C+ F K ++K+H +K V H C K F+ + L+ H H + ++C +
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 482 --CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM 524
C K F + L +H +H D C T ++H+
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 184
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 44/148 (29%)
Query: 53 LQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--------------------- 89
+ K+Y C C Y W L+AHL H G K F C +
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 90 -----------CDKAFSLKSNLSKHVRHHMENVKQC------KICLEIFEDDEVLEEHVK 132
CD F+ K+N+ KH + N+K C + C + F+ L+ H
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKHF-NRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
Query: 133 SH-QNRRFKCP--CCERIFTSETRMRNH 157
SH Q ++CP C++ F+ +R++ H
Sbjct: 128 SHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 314 CQRMFRNEDKLTAHELSHTMEKTLY-KCLYCHKVFKKSTSFDKHME--HHNRNVLHKCHL 370
C++ F + LT H L+HT EK C F + KH H+ + ++ CH
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF 109
Query: 371 --CTKAYPSEKNLDRHLLTHNVRRSFRC--KSCGRRFESEELLIVHQVIH 416
C KA+ L H +H + + C + C +RF L H+ +H
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNC--DFCHLTFTTDNDLIRHMRSHEEYHTKHTCD-- 537
C + L HL H + C + C FT+ + L RH +H TCD
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG-EKNFTCDSD 78
Query: 538 ICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASH-LLIIHNIESSQQV 591
C +F +K H HN+ C++ N K + H L +H +QQ+
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL 133
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 25 ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQK-KYKCKL--CARMYRYKWNLKAHLKMH 79
E+ F C+ C F K+N+++H H+++ Y C C + ++ LK H H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 80 KGPKIFTCA--QCDKAFSLKSNLSKHVRHHM 108
+ C CDK FSL S L +H + H
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 64/165 (38%), Gaps = 24/165 (14%)
Query: 414 VIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK--CPKLFRHESHLQNHVIVH 471
V+++R C ++ L+ HL H K F C + C K F HL H + H
Sbjct: 8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
Query: 472 DESEVHKC--LYCFKVFVHKAHLDKHLILHETSEMHN-------CDF--CHLTFTTDNDL 520
+ C C F KA++ KH + HN C F C F N L
Sbjct: 68 TGEKNFTCDSDGCDLRFTTKANMKKHF-----NRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 521 IRHMRSHEE---YHTKHTCDICGEKFINDLKLKAHIKIIHNLFTC 562
H SH + Y H + C ++F +LK H K +H + C
Sbjct: 123 KVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEK-VHAGYPC 164
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 54 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
+K Y C C + + L H ++H G K + C +C KAFS S L H R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 192 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
K Y C EC K F+ I+ QH R H E Y C C +F S L++H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETS 502
K + C +C K F S L H VH + +KCL C K F + L H +H +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ C C KA+ L +H H + ++C CG+ F LI HQ IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 419 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDES 474
K + C +C ++F L QH H K + C +C K F S L NH +H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH-KGP 82
E+ + C C K+F S + +H H +K YKC C + + L H ++H GP
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 338 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRS 393
Y C+ C K F +S+ +H H +KC C KA+ L H H S
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
+ C+ C K F + L +H +H + + C C F+ ++ LI H R H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSH 134
K + C +C KAFS S L +H R H E +C C + F + L H + H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 220 EDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNHCFLMFPDEKNLRNHE 268
E Y C C +F S LV H H G PY C C F L NH+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 165 ENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFR 214
E + C +C K FS H R H K Y+C EC K F+ + H R
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 33 CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQC 90
C K++ S+++ H+ TH +K Y C C + L H + H G + F C +C
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 91 DKAFSLKSNLSKHVRHHM 108
D+AFS +L+ H++ H
Sbjct: 73 DRAFSRSDHLALHMKRHF 90
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 62 CARMYRYKWNLKAHLKMHKGPKIFTCA--QCDKAFSLKSNLSKHVRHHMENVK-QCKICL 118
C + Y +LKAHL+ H G K + C C F+ L++H R H + QC+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 119 EIFEDDEVLEEHVKSH 134
F + L H+K H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 473 ESEVHKCLY--CFKVFVHKAHLDKHLILHETSEMHNCDF--CHLTFTTDNDLIRHMRSHE 528
+ H C Y C K + +HL HL H + ++CD+ C F ++L RH R H
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 529 EYHTKHTCDICGEKFINDLKLKAHIK 554
H C C F L H+K
Sbjct: 63 G-HRPFQCQKCDRAFSRSDHLALHMK 87
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRCKSCG 400
C K + KS+ H+ H + C C + L RH H R F+C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 401 RRFESEELLIVHQVIH 416
R F + L +H H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 88 AQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVLEEHVKSHQNRR-FKCPC 143
A C K ++ S+L H+R H E C C F + L H + H R F+C
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 144 CERIFTSETRMRNHI 158
C+R F+ + H+
Sbjct: 72 CDRAFSRSDHLALHM 86
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 35/113 (30%), Gaps = 27/113 (23%)
Query: 361 NRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER 418
+R H C C K Y +L HL TH + + C G
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDG------------------ 43
Query: 419 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
C F L +H H + F C KC + F HL H+ H
Sbjct: 44 -------CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 454 CPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSEMHNCDFCH 511
C K + SHL+ H+ H + + C + C F L +H H C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 512 LTFTTDNDLIRHMRSH 527
F+ + L HM+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 270 TSCFTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRY--CQRMFRNEDKLT 325
T+ TC + C + Y HL+ H+ + P C + C F D+LT
Sbjct: 4 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP--------YHCDWDGCGWKFARSDELT 55
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
H HT + ++C C + F +S HM+ H
Sbjct: 56 RHYRKHTGHRP-FQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 33 CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQC 90
C K++ S+++ H+ TH +K Y C C + L H + H G + F C +C
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 91 DKAFSLKSNLSKHVRHHM 108
D+AFS +L+ H++ H
Sbjct: 72 DRAFSRSDHLALHMKRHF 89
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 62 CARMYRYKWNLKAHLKMHKGPKIFTCA--QCDKAFSLKSNLSKHVRHHMENVK-QCKICL 118
C + Y +LKAHL+ H G K + C C F+ L++H R H + QC+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 119 EIFEDDEVLEEHVKSH 134
F + L H+K H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 473 ESEVHKCLY--CFKVFVHKAHLDKHLILHETSEMHNCDF--CHLTFTTDNDLIRHMRSHE 528
+ H C Y C K + +HL HL H + ++CD+ C F ++L RH R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 529 EYHTKHTCDICGEKFINDLKLKAHIK 554
H C C F L H+K
Sbjct: 62 G-HRPFQCQKCDRAFSRSDHLALHMK 86
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRCKSCG 400
C K + KS+ H+ H + C C + L RH H R F+C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 401 RRFESEELLIVHQVIH 416
R F + L +H H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 88 AQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVLEEHVKSHQNRR-FKCPC 143
A C K ++ S+L H+R H E C C F + L H + H R F+C
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 144 CERIFTSETRMRNHI 158
C+R F+ + H+
Sbjct: 71 CDRAFSRSDHLALHM 85
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 398 SCGRRFESEELLIVHQVIH--ERKFH-KCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKC 454
CG+ + L H H E+ +H C F L +H H + F C KC
Sbjct: 12 GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 455 PKLFRHESHLQNHVIVH 471
+ F HL H+ H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 454 CPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSEMHNCDFCH 511
C K + SHL+ H+ H + + C + C F L +H H C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 512 LTFTTDNDLIRHMRSH 527
F+ + L HM+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 270 TSCFTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRY--CQRMFRNEDKLT 325
T+ TC + C + Y HL+ H+ + P C + C F D+LT
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP--------YHCDWDGCGWKFARSDELT 54
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
H HT + ++C C + F +S HM+ H
Sbjct: 55 RHYRKHTGHRP-FQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 397 KSCGRRFESEELLIVHQVI----------HERKFHKCTQCEESFKNKKHLKQHLLAHEKV 446
KSC R F + L+ H + H + +C + +SFK K L H+ H
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 447 KVFHC--PKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHET 501
K F C P C K+F +L+ H H + KC + C + F + + KH+ +H +
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 31 EMCP---KSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIF 85
E CP KSF K + H+ H +K + C C +++ NLK H + H G K F
Sbjct: 63 EECPREGKSFKAKYKLVNHIRV-HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 86 TC--AQCDKAFSLKSNLSKHVRHHMEN 110
C CD+ F+ S+ KH+ H +
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHVHTSD 148
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 55 KKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVRHH 107
K+Y C C Y W L+AHL H G K F C + C+K F+ +L++H H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 33 CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCAQ- 89
C +++ ++ H++ H +K + CK C + + +L H H G K FTC
Sbjct: 11 CGAAYNKNWKLQAHLSK-HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 90 -CDKAFSLKSNLSKHV 104
CD F+ K+N+ KH
Sbjct: 70 GCDLRFTTKANMKKHF 85
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 144 CERIFTSETRMRNHIDMKHADENLFKCKK--CLKVFSDEIKFHLHGRAHA--KFYRCSE- 198
C + +++ H+ KH E F CK+ C K F+ H H K + C
Sbjct: 11 CGAAYNKNWKLQAHLS-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 199 -CEKRFATEDIMRQHFRNYHN 218
C+ RF T+ M++HF +HN
Sbjct: 70 GCDLRFTTKANMKKHFNRFHN 90
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKC--HLCTKAYPSEKNLDRHLLTHNVRRSFRCKS-- 398
C + K+ H+ H C C K + S +L RH LTH ++F C S
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 399 CGRRFESEELLIVH 412
C RF ++ + H
Sbjct: 71 CDLRFTTKANMKKH 84
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 368 CHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVH-QVIH 416
C +CT+A+ +++L RH +H + + C C R F +LLI H Q IH
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 57 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHV 104
+ C++C R + + +LK H + H K + C C++AF+ + L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 28 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHL-KMHKG 81
F CE+C ++F + +++RH +H +K Y C LC R + + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 479 CLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM 524
C C + F + HL +H H + + C C+ FT + LIRH
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 114 CKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHAD 164
C++C F E L+ H +SH N + + C C R FT + H H+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 311 CRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHME 358
C C R F ++ L H SHT EK Y C C++ F + +H +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQ 51
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 85 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVK 132
F C C +AF+ + +L +H R H E C +C F ++L H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 58 KCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHV-RHH 107
+C C + +R + L HL+ H G K + C C+ A + K++L H+ RHH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 309 QKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNR 362
++C YC + FR+ L H +HT EK YKC +C + TS H+E H++
Sbjct: 5 RECSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 110 NVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKH 162
+ ++C C + F + L H+++H + +KC CE +T +R H++ H
Sbjct: 3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 474 SEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
S +C YC K F +L+ HL H + + C+FC L H+ H
Sbjct: 2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 451 CPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 499
C C K FR +L H+ H + +KC +C K L HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHME-NVKQCKICLEIFEDDEVLEEHVKSHQNR 137
+ F C C K + S LS+H R H+ + C C + F D + H+K HQN+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 417 ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
ER F C C +++++ L +H AH + CP+C K FR +S + H+ VH
Sbjct: 2 ERPFF-CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 54 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM 108
++ + C C + YR L H + H G + +C +C K F +S +++H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 507 CDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN 558
C+FC T+ + L RH R+H Y + +C CG+ F + ++ H+K+ N
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKVHQN 57
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHK 80
ER F C C K++ S + RH A H + C C + +R + + HLK+H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHE 500
+ F C C K +R S L H H C C K F ++ +++HL +H+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 368 CHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERK 419
C+ C K Y L RH H R C CG+ F + + H +H+ K
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 47 MAATHDLQKKYKCKLCARMYRYKWNLKAH-LKMHK-GPKIFTCAQCDKAFSLKSNLSKHV 104
M T + + Y+CK+C+R+Y + N H + HK K++ C C K F+ K N++ HV
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 105 R 105
+
Sbjct: 61 K 61
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQ-KKYKCKLCARMYRYKWNLKAHLKM 78
E ++C++C + + H SN RH +H K Y C C + + K N+ AH+K+
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 500 ETSEMHNCDFCHLTFTTDNDLIRH-MRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN 558
E + C C +T ++ RH + SH+ + C C ++F + AH+KIIH
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Query: 559 L 559
+
Sbjct: 66 I 66
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 55 KKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ Y C + C R + L H+++H G K F C C + FS +L+ H+R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 71 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEE 129
NL ++ P CD+ FS L++H+R H + QC+IC+ F + L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 130 HVKSH 134
H+++H
Sbjct: 68 HIRTH 72
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 26 RKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 79
R + C E C + F + RH+ H QK ++C++C R + +L H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 137 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA 191
R + CP C+R F+ + HI + H + F+C+ C++ FS H R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 444 EKVKVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 499
K++ + CP C + F L H+ +H + +C C + F HL H+ H
Sbjct: 15 PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 410 IVHQVIHERKFHKCT--QCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNH 467
+++ V+ + + + C C+ F L +H+ H K F C C + F HL H
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 468 VIVH 471
+ H
Sbjct: 69 IRTH 72
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
C R F D+LT H HT +K ++C C + F +S H+ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTH 72
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 392 RSFRC--KSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAH 443
R + C +SC RRF + L H IH +K +C C +F HL H+ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKH 103
K ++C++C R + +L H++ H G K F C C + F+ +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+CR C R F D LT H +HT EK + C C + F +S +H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH 50
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 113 QCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKH 162
QC+IC+ F + L H+++H + F C C R F + H D++H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 507 CDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNL 559
C C F+ + L H+R+H CDICG KF + K H I H L
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHT-GEKPFACDICGRKFARSDERKRHRDIQHIL 57
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 367 KCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRF 403
+C +C + + +L H+ TH + F C CGR+F
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF 242
Y C EC R ++++H R H Y C YC SF+TK L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 56 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 105
KY C+ C + LK H++ H + + C C+ +F K NL+KH++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 492 LDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRS 526
L KH+ H ++C +C+ +F T +L +HM+S
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 474 SEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM 524
+E H C C + F K ++HL L +++ C +C TF + L RH+
Sbjct: 26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 421 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHV 468
H C C ESF +K ++HL +VF C CP F L H+
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 534 HTCDICGEKFINDLKLKAHIKIIH--NLFTCIHCGDTLNNAKDYASHLLIIHNIES 587
H C +CGE F + + H++++H +F C +C T ++ H+ H E+
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN 84
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 114 CKICLEIFEDDEVLEEHVKS-HQNRRFKCPCCERIFTSETRMRNHIDMKHADEN 166
C +C E F E H++ H + F C C F S + HI+ H EN
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN 84
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 59 CKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR--HHMEN 110
C +C + K + HL++ ++F C C F L++H+ H EN
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN 84
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 62 CARMYRYKWNLKAHLKMHKGPKIFTCA--QCDKAFSLKSNLSKHVRHH 107
C + Y +LKAH + H G K F+C+ C++ F+ LS+H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 398 SCGRRFESEELLIVH---QVIHERKFHKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHC 451
CGR F + + L H Q IH++ F C + C +SF KKHLK+H+ H + + C
Sbjct: 14 GCGRIFSNRQYLNHHKKYQHIHQKSF-SCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHME 109
K + CA+C KAF+++SNL KH + H +
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTK 37
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHL--KMHKGPKIFTCAQCDKAFSLKSNLSKHVR 105
TH +K Y+C +C + +K H+ K + F C CD + KS+L H+R
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
>pdb|1OG6|A Chain A, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
Nadph
pdb|1OG6|B Chain B, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
Nadph
pdb|1OG6|C Chain C, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
Nadph
Length = 298
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 84 IFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKIC 117
I+ QC+ AF L+ H+R ME V +C I
Sbjct: 54 IYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIA 87
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 392 RSFRCKSCGRRFESEELLIVHQVIH 416
+ + C CG+ F S+ LIVHQ IH
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIH 33
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 54 QKKYKCKLCARMYRYKWNLKAHLKMHKG 81
+K YKC+ C + Y K+NL H K+H G
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 81 GPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C +C KAF LKS L H R H
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIH 33
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 81 GPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C C KAF LKS L H R H
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHH 107
K + C+QC K FSLKS L H R H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 114 CKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKH 162
C +CL F L++H++ ++ + CP C++ FTS +H+ KH
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTKV-CPVCKKEFTSTDSALDHVCKKH 124
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 449 FHCPKCPKLFRHESHLQNHVIVHD 472
F CP+CPK F HL H+ +H+
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHE 26
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHM 108
K F C++C KAF+ KSNL H R H
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHT 36
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 54 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
+K +KCK C + +R +L +HL++H G K
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 54 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
+K YKC +C + +RY +L H ++H G K
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHH 107
K F CA+C K+FS+ S L+ H R H
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIH 35
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 449 FHCPKCPKLFRHESHLQNHVIVHD 472
F CP+CPK F HL H+++H+
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHE 26
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 54 QKKYKCKLCARMYRYKWNLKAHLKMHKG 81
+K Y C++C +R+ LK+HL++H G
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2ELV|A Chain A, Solution Structure Of The 6th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 363 NVLHKCHLCTKAYPSEKNLDRHLLTHN 389
+L+ CH+C + + +E + DRH+L H
Sbjct: 7 GLLYDCHICERKFKNELDRDRHMLVHG 33
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 192 KFYRCSECEKRFATEDIMRQHFRNYHNKE 220
K Y+C CEKRFA ++ H + H+KE
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKE 29
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 54 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
QK ++C C + +R K NL H ++H G K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2CTD|A Chain A, Solution Structure Of Two Zf-C2h2 Domains From Human Zinc
Finger Protein 512
Length = 96
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 535 TCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHN 584
TC G K I LK K +FTC HCG L + H++ HN
Sbjct: 39 TCQAVGRKTIEGLK-KHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHH 107
K + C +C KAF+ K+NL++H R H
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIH 35
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 81 GPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C++C KAF KS L H+R H
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTH 33
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 54 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
+K YKC C + +R + NL H +H G K
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVH 471
K F CP+CPK F HL H+ H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 48 AATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 79
++ K +KC LC R K NLKAH+ H
Sbjct: 1 GSSGSSGKPFKCSLCEYATRSKSNLKAHMNRH 32
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 82 PKIFTCAQCDKAFSLKSNLSKHVRHH 107
KIFTC C+K F K +L H+R H
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIH 32
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 416 HERKFHKCTQCEESFKNKKHLKQHLLAH 443
H RK ++C++C+ +F +KHL QH H
Sbjct: 8 HTRKRYECSKCQATFNLRKHLIQHQKTH 35
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 81 GPKIFTCAQCDKAFSLKSNLSKHVRHHME 109
G K F C+ C+KAFS KS L H + H E
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAE 35
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHH 107
K + C QC KAFS K +L H+R H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 53 LQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
++K YKC+ C + Y + NL H ++H G K
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 392 RSFRCKSCGRRFESEELLIVHQVIH 416
+ ++C CG+ F + L HQVIH
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIH 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,367,569
Number of Sequences: 62578
Number of extensions: 883095
Number of successful extensions: 5250
Number of sequences better than 100.0: 157
Number of HSP's better than 100.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3229
Number of HSP's gapped (non-prelim): 1617
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)