Query psy2875
Match_columns 693
No_of_seqs 602 out of 4365
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 19:05:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1074|consensus 100.0 5.8E-29 1.2E-33 262.8 10.4 160 192-384 604-776 (958)
2 KOG1074|consensus 100.0 3E-29 6.5E-34 264.9 6.7 223 364-587 604-935 (958)
3 KOG2462|consensus 99.9 5.4E-28 1.2E-32 226.8 5.6 132 420-554 130-264 (279)
4 KOG2462|consensus 99.9 2.9E-27 6.2E-32 221.9 5.6 133 364-497 129-264 (279)
5 KOG3608|consensus 99.9 2.7E-26 5.9E-31 219.4 9.6 230 397-631 140-402 (467)
6 KOG3608|consensus 99.9 2.3E-26 5E-31 219.9 7.8 217 366-586 135-379 (467)
7 KOG3623|consensus 99.9 2.4E-23 5.2E-28 216.3 5.7 79 475-554 893-971 (1007)
8 KOG3623|consensus 99.9 2.9E-23 6.3E-28 215.6 3.2 77 503-581 893-972 (1007)
9 KOG3576|consensus 99.7 5.7E-18 1.2E-22 150.4 3.0 112 475-587 116-240 (267)
10 KOG3576|consensus 99.7 3.4E-17 7.4E-22 145.5 2.9 111 418-528 115-236 (267)
11 PLN03086 PRLI-interacting fact 99.3 4.3E-12 9.4E-17 135.4 7.2 145 394-557 408-564 (567)
12 PLN03086 PRLI-interacting fact 99.2 9.4E-11 2E-15 125.3 9.4 143 366-526 408-562 (567)
13 PHA00733 hypothetical protein 99.0 2.9E-10 6.3E-15 99.2 4.8 53 502-557 71-123 (128)
14 PHA00733 hypothetical protein 99.0 2.6E-10 5.6E-15 99.5 4.5 53 532-584 72-124 (128)
15 PHA02768 hypothetical protein; 98.8 3.3E-09 7.1E-14 75.3 1.7 42 57-100 6-47 (55)
16 PHA02768 hypothetical protein; 98.7 5.5E-09 1.2E-13 74.2 2.1 21 479-499 8-28 (55)
17 KOG3993|consensus 98.7 2.7E-09 5.8E-14 106.3 -0.2 187 393-584 267-483 (500)
18 KOG3993|consensus 98.6 4.2E-09 9E-14 104.9 -0.5 159 26-188 266-479 (500)
19 KOG1146|consensus 98.6 2E-08 4.3E-13 114.0 2.4 76 30-105 439-539 (1406)
20 PF13465 zf-H2C2_2: Zinc-finge 98.5 7.4E-08 1.6E-12 58.4 2.4 26 71-96 1-26 (26)
21 PF13465 zf-H2C2_2: Zinc-finge 98.5 1E-07 2.2E-12 57.8 2.5 23 464-486 2-24 (26)
22 PHA00732 hypothetical protein 98.3 3E-07 6.6E-12 72.4 2.6 44 504-554 1-45 (79)
23 PHA00616 hypothetical protein 98.2 4.6E-07 1E-11 61.1 1.5 34 56-89 1-34 (44)
24 PHA00616 hypothetical protein 98.2 5E-07 1.1E-11 61.0 1.5 31 449-479 2-32 (44)
25 KOG1146|consensus 98.2 2.7E-07 5.8E-12 105.1 -0.6 89 534-638 1261-1349(1406)
26 PHA00732 hypothetical protein 98.2 1.5E-06 3.2E-11 68.5 3.1 47 27-79 1-47 (79)
27 PF05605 zf-Di19: Drought indu 97.8 2.5E-05 5.5E-10 57.1 4.1 51 27-80 2-53 (54)
28 PF05605 zf-Di19: Drought indu 97.7 3.7E-05 8.1E-10 56.2 3.8 51 504-557 2-53 (54)
29 PF00096 zf-C2H2: Zinc finger, 97.4 8.1E-05 1.8E-09 43.7 1.8 20 450-469 2-21 (23)
30 PF00096 zf-C2H2: Zinc finger, 97.4 0.00012 2.6E-09 43.0 2.1 22 477-498 1-22 (23)
31 PF12756 zf-C2H2_2: C2H2 type 97.3 9.1E-05 2E-09 62.4 1.7 73 29-107 1-73 (100)
32 PF13894 zf-C2H2_4: C2H2-type 97.1 0.00026 5.7E-09 41.9 1.6 23 560-582 1-23 (24)
33 PF12756 zf-C2H2_2: C2H2 type 97.0 0.00032 7E-09 59.0 2.2 21 59-79 2-22 (100)
34 PF13894 zf-C2H2_4: C2H2-type 97.0 0.00034 7.4E-09 41.4 1.5 21 534-554 1-21 (24)
35 PF13912 zf-C2H2_6: C2H2-type 97.0 0.0004 8.7E-09 42.6 1.5 23 560-582 2-24 (27)
36 COG5189 SFP1 Putative transcri 96.9 0.00029 6.3E-09 68.3 0.7 72 24-105 346-419 (423)
37 PF13912 zf-C2H2_6: C2H2-type 96.8 0.0009 1.9E-08 41.0 2.0 21 477-497 2-22 (27)
38 COG5189 SFP1 Putative transcri 96.8 0.00041 8.9E-09 67.2 0.6 54 501-554 346-419 (423)
39 PF09237 GAGA: GAGA factor; I 96.8 0.00087 1.9E-08 46.3 1.9 29 559-587 24-52 (54)
40 KOG2231|consensus 96.3 0.0026 5.7E-08 69.7 3.4 151 477-650 100-282 (669)
41 PF09237 GAGA: GAGA factor; I 96.2 0.0034 7.3E-08 43.5 2.2 30 54-83 22-51 (54)
42 KOG2231|consensus 96.0 0.012 2.6E-07 64.7 6.3 52 112-171 183-240 (669)
43 smart00355 ZnF_C2H2 zinc finge 96.0 0.0064 1.4E-07 36.4 2.4 21 506-526 2-22 (26)
44 smart00355 ZnF_C2H2 zinc finge 96.0 0.0056 1.2E-07 36.7 2.2 23 560-582 1-23 (26)
45 PF13909 zf-H2C2_5: C2H2-type 95.9 0.0042 9E-08 36.8 1.4 24 560-584 1-24 (24)
46 PRK04860 hypothetical protein; 95.7 0.0055 1.2E-07 55.7 1.9 39 56-98 119-157 (160)
47 PRK04860 hypothetical protein; 95.5 0.0075 1.6E-07 54.8 2.0 24 463-486 130-153 (160)
48 COG5236 Uncharacterized conser 95.5 0.018 3.9E-07 56.8 4.6 91 488-585 200-307 (493)
49 COG5048 FOG: Zn-finger [Genera 95.0 0.0057 1.2E-07 66.9 -0.5 61 420-480 289-355 (467)
50 PF12874 zf-met: Zinc-finger o 95.0 0.013 2.9E-07 34.9 1.3 17 59-75 3-19 (25)
51 PF12874 zf-met: Zinc-finger o 94.8 0.016 3.4E-07 34.6 1.3 22 85-106 1-22 (25)
52 COG5048 FOG: Zn-finger [Genera 94.5 0.013 2.9E-07 64.0 0.7 149 26-175 288-454 (467)
53 PF12171 zf-C2H2_jaz: Zinc-fin 93.8 0.03 6.4E-07 34.2 1.1 21 28-48 2-22 (27)
54 KOG2785|consensus 93.6 0.11 2.4E-06 52.7 5.2 74 476-555 166-242 (390)
55 PF12171 zf-C2H2_jaz: Zinc-fin 93.5 0.037 8E-07 33.7 1.2 22 85-106 2-23 (27)
56 KOG2482|consensus 92.7 0.14 3.1E-06 50.8 4.3 22 85-106 196-217 (423)
57 COG5236 Uncharacterized conser 92.6 0.18 3.9E-06 50.0 4.8 79 57-137 152-246 (493)
58 KOG2785|consensus 90.6 0.5 1.1E-05 48.1 5.7 50 532-581 165-242 (390)
59 KOG2893|consensus 90.1 0.11 2.3E-06 48.7 0.5 45 25-75 9-53 (341)
60 KOG4173|consensus 89.8 0.13 2.8E-06 47.3 0.8 76 505-584 80-171 (253)
61 PF13913 zf-C2HC_2: zinc-finge 89.8 0.25 5.4E-06 29.5 1.7 17 59-76 5-21 (25)
62 smart00451 ZnF_U1 U1-like zinc 88.9 0.29 6.3E-06 31.8 1.8 22 27-48 3-24 (35)
63 KOG2482|consensus 88.7 0.51 1.1E-05 47.0 4.0 107 111-218 144-304 (423)
64 smart00451 ZnF_U1 U1-like zinc 88.5 0.29 6.3E-06 31.8 1.6 22 533-554 3-24 (35)
65 PF13913 zf-C2HC_2: zinc-finge 88.4 0.43 9.3E-06 28.4 2.1 8 536-543 5-12 (25)
66 TIGR00622 ssl1 transcription f 86.1 1.1 2.5E-05 37.6 4.1 24 393-416 81-104 (112)
67 TIGR00622 ssl1 transcription f 85.5 1.6 3.4E-05 36.8 4.6 17 393-409 15-31 (112)
68 cd00350 rubredoxin_like Rubred 84.0 0.58 1.3E-05 30.0 1.2 9 447-455 16-24 (33)
69 KOG2893|consensus 84.0 0.31 6.8E-06 45.7 -0.1 51 532-585 10-60 (341)
70 cd00350 rubredoxin_like Rubred 84.0 0.75 1.6E-05 29.5 1.7 8 504-511 17-24 (33)
71 KOG4173|consensus 80.0 0.62 1.4E-05 42.9 0.3 76 26-105 78-167 (253)
72 PF09986 DUF2225: Uncharacteri 78.5 0.37 7.9E-06 46.6 -1.8 41 532-572 4-61 (214)
73 COG4049 Uncharacterized protei 78.1 0.93 2E-05 32.2 0.6 29 23-51 13-41 (65)
74 COG4049 Uncharacterized protei 77.2 1.2 2.6E-05 31.7 0.9 27 559-585 17-43 (65)
75 PF12013 DUF3505: Protein of u 77.0 2.8 6E-05 35.7 3.4 25 560-584 81-109 (109)
76 PF12013 DUF3505: Protein of u 76.1 4.3 9.3E-05 34.5 4.4 25 477-501 81-109 (109)
77 KOG2186|consensus 73.7 1.6 3.6E-05 41.8 1.2 46 505-554 4-49 (276)
78 cd00729 rubredoxin_SM Rubredox 70.0 3.2 6.9E-05 26.8 1.6 9 477-485 3-11 (34)
79 TIGR02098 MJ0042_CXXC MJ0042 f 63.7 4.5 9.7E-05 26.8 1.4 14 28-41 3-16 (38)
80 PRK00398 rpoP DNA-directed RNA 63.4 4.5 9.6E-05 28.2 1.4 12 27-38 3-14 (46)
81 PHA00626 hypothetical protein 62.0 1.8 3.8E-05 31.0 -0.8 14 559-572 23-36 (59)
82 PF13717 zinc_ribbon_4: zinc-r 61.9 6.6 0.00014 25.8 1.9 33 28-66 3-35 (36)
83 PF13719 zinc_ribbon_5: zinc-r 61.3 5.6 0.00012 26.2 1.5 32 29-66 4-35 (37)
84 KOG2186|consensus 59.3 6 0.00013 38.1 1.9 46 57-105 4-49 (276)
85 COG1592 Rubrerythrin [Energy p 57.6 6.6 0.00014 35.9 1.8 23 420-455 134-156 (166)
86 PF06524 NOA36: NOA36 protein; 57.1 31 0.00067 33.5 6.2 12 472-483 138-149 (314)
87 PF09538 FYDLN_acid: Protein o 56.6 6.8 0.00015 33.1 1.6 11 448-458 26-36 (108)
88 COG2888 Predicted Zn-ribbon RN 56.3 7.1 0.00015 28.5 1.4 8 559-566 50-57 (61)
89 PF09986 DUF2225: Uncharacteri 55.4 6.3 0.00014 38.1 1.4 20 337-356 5-24 (214)
90 PF09723 Zn-ribbon_8: Zinc rib 54.8 4.5 9.8E-05 27.6 0.2 29 28-64 6-34 (42)
91 smart00659 RPOLCX RNA polymera 54.1 9.1 0.0002 26.4 1.6 9 477-485 3-11 (44)
92 COG1997 RPL43A Ribosomal prote 53.2 5.2 0.00011 31.7 0.4 10 534-543 54-63 (89)
93 PF02892 zf-BED: BED zinc fing 52.2 11 0.00023 26.0 1.8 28 24-51 13-44 (45)
94 smart00834 CxxC_CXXC_SSSS Puta 51.1 6.1 0.00013 26.5 0.4 10 477-486 6-15 (41)
95 PF10571 UPF0547: Uncharacteri 50.8 8.5 0.00018 23.2 0.9 10 195-204 16-25 (26)
96 COG1592 Rubrerythrin [Energy p 50.4 9.2 0.0002 34.9 1.6 12 500-511 145-156 (166)
97 TIGR00373 conserved hypothetic 50.1 17 0.00036 33.3 3.3 16 477-492 110-125 (158)
98 smart00531 TFIIE Transcription 50.0 14 0.00031 33.3 2.7 13 448-460 99-111 (147)
99 TIGR00373 conserved hypothetic 49.5 15 0.00033 33.5 2.8 17 420-436 109-125 (158)
100 smart00531 TFIIE Transcription 49.2 15 0.00032 33.2 2.7 38 473-514 96-133 (147)
101 PRK14890 putative Zn-ribbon RN 48.5 7.4 0.00016 28.5 0.5 9 559-567 48-56 (59)
102 KOG2272|consensus 48.1 8.1 0.00018 37.0 0.9 18 111-128 99-116 (332)
103 smart00734 ZnF_Rad18 Rad18-lik 47.2 15 0.00031 22.1 1.6 19 535-554 3-21 (26)
104 smart00614 ZnF_BED BED zinc fi 47.0 14 0.0003 26.3 1.7 26 27-52 18-48 (50)
105 COG1198 PriA Primosomal protei 44.6 16 0.00035 42.0 2.7 12 502-513 473-484 (730)
106 TIGR02605 CxxC_CxxC_SSSS putat 44.1 14 0.0003 26.4 1.4 11 338-348 6-16 (52)
107 PF05443 ROS_MUCR: ROS/MUCR tr 43.0 11 0.00024 33.0 0.9 25 560-587 73-97 (132)
108 PRK09678 DNA-binding transcrip 43.0 8.8 0.00019 29.7 0.2 15 475-489 26-42 (72)
109 PF12907 zf-met2: Zinc-binding 42.5 17 0.00037 24.5 1.5 32 194-225 2-36 (40)
110 PF02176 zf-TRAF: TRAF-type zi 42.1 25 0.00054 25.8 2.6 26 461-486 23-52 (60)
111 PRK06266 transcription initiat 42.1 24 0.00053 32.9 3.0 16 476-491 117-132 (178)
112 PRK00464 nrdR transcriptional 41.4 11 0.00023 34.2 0.5 13 366-378 29-41 (154)
113 PRK06266 transcription initiat 41.1 23 0.0005 33.1 2.7 17 420-436 117-133 (178)
114 PF06524 NOA36: NOA36 protein; 40.6 12 0.00025 36.3 0.7 12 361-372 138-149 (314)
115 COG1198 PriA Primosomal protei 40.3 20 0.00043 41.3 2.5 12 474-485 473-484 (730)
116 COG1996 RPC10 DNA-directed RNA 40.2 16 0.00035 25.8 1.1 10 477-486 7-16 (49)
117 PRK09678 DNA-binding transcrip 39.7 7.7 0.00017 30.0 -0.5 14 83-96 26-41 (72)
118 PF09538 FYDLN_acid: Protein o 39.4 18 0.0004 30.5 1.6 28 588-630 12-39 (108)
119 TIGR02300 FYDLN_acid conserved 38.5 21 0.00046 30.7 1.8 13 447-459 25-37 (129)
120 KOG2071|consensus 38.3 24 0.00053 38.7 2.7 27 473-499 415-441 (579)
121 PF04959 ARS2: Arsenite-resist 37.4 28 0.0006 33.5 2.7 29 24-52 74-102 (214)
122 PF08274 PhnA_Zn_Ribbon: PhnA 36.7 15 0.00033 22.9 0.5 10 83-92 18-27 (30)
123 KOG2071|consensus 36.5 25 0.00054 38.6 2.4 17 109-125 511-527 (579)
124 PRK04023 DNA polymerase II lar 36.3 30 0.00064 40.6 3.1 9 505-513 664-672 (1121)
125 PF15269 zf-C2H2_7: Zinc-finge 35.6 24 0.00052 24.0 1.4 22 449-470 21-42 (54)
126 PRK04023 DNA polymerase II lar 34.5 34 0.00075 40.1 3.2 7 422-428 665-671 (1121)
127 PF15269 zf-C2H2_7: Zinc-finge 34.1 26 0.00056 23.8 1.3 22 27-48 20-41 (54)
128 PF12907 zf-met2: Zinc-binding 33.4 25 0.00053 23.7 1.1 29 139-167 2-33 (40)
129 KOG2272|consensus 33.0 40 0.00087 32.5 2.9 14 308-321 221-234 (332)
130 PF13451 zf-trcl: Probable zin 28.6 36 0.00078 24.1 1.4 18 25-42 2-19 (49)
131 KOG1701|consensus 27.4 12 0.00027 39.0 -1.5 40 588-628 397-438 (468)
132 PF14353 CpXC: CpXC protein 27.3 31 0.00068 30.2 1.2 24 336-359 37-60 (128)
133 PF12760 Zn_Tnp_IS1595: Transp 26.7 61 0.0013 22.5 2.3 11 474-484 35-45 (46)
134 PF00301 Rubredoxin: Rubredoxi 26.7 39 0.00084 23.7 1.3 9 367-375 3-11 (47)
135 KOG4167|consensus 26.0 17 0.00037 40.6 -0.9 25 56-80 792-816 (907)
136 COG5151 SSL1 RNA polymerase II 25.6 47 0.001 33.1 2.0 23 532-554 387-409 (421)
137 PF07754 DUF1610: Domain of un 24.4 35 0.00076 20.1 0.6 10 26-35 15-24 (24)
138 TIGR01206 lysW lysine biosynth 24.3 24 0.00052 25.6 -0.1 11 28-38 3-13 (54)
139 COG4957 Predicted transcriptio 23.8 42 0.00091 29.1 1.2 23 562-587 79-101 (148)
140 KOG2807|consensus 23.6 1.2E+02 0.0025 30.9 4.3 15 393-407 290-304 (378)
141 TIGR02300 FYDLN_acid conserved 23.4 50 0.0011 28.5 1.6 28 588-630 12-39 (129)
142 TIGR01384 TFS_arch transcripti 23.2 40 0.00087 28.2 1.0 12 248-259 16-27 (104)
143 PF13878 zf-C2H2_3: zinc-finge 23.2 69 0.0015 21.7 1.9 24 57-80 14-39 (41)
144 PF01286 XPA_N: XPA protein N- 23.0 51 0.0011 21.3 1.2 11 588-598 6-16 (34)
145 PRK00464 nrdR transcriptional 22.7 57 0.0012 29.6 1.9 18 642-659 29-46 (154)
146 PF10083 DUF2321: Uncharacteri 22.6 49 0.0011 29.7 1.4 55 588-661 31-88 (158)
147 PF04959 ARS2: Arsenite-resist 21.9 37 0.0008 32.6 0.6 24 476-499 77-100 (214)
148 KOG4377|consensus 21.9 42 0.00092 34.9 1.0 19 539-558 409-427 (480)
149 PF05443 ROS_MUCR: ROS/MUCR tr 21.8 53 0.0011 28.9 1.5 24 477-503 73-96 (132)
150 COG3364 Zn-ribbon containing p 21.2 61 0.0013 26.6 1.6 27 533-567 2-28 (112)
151 PRK14714 DNA polymerase II lar 21.2 85 0.0018 38.1 3.4 10 448-457 692-701 (1337)
152 KOG2593|consensus 20.9 72 0.0016 33.7 2.5 16 475-490 127-142 (436)
153 PF01096 TFIIS_C: Transcriptio 20.9 27 0.00058 23.4 -0.4 8 338-345 29-36 (39)
154 COG2331 Uncharacterized protei 20.8 39 0.00085 26.1 0.4 30 28-66 13-43 (82)
155 PTZ00255 60S ribosomal protein 20.7 42 0.00091 27.2 0.6 13 83-95 53-65 (90)
156 KOG4167|consensus 20.5 31 0.00068 38.6 -0.2 26 559-584 792-817 (907)
157 KOG2593|consensus 20.3 1.2E+02 0.0026 32.2 3.9 38 443-483 123-160 (436)
158 PF14446 Prok-RING_1: Prokaryo 20.3 72 0.0016 23.1 1.6 10 58-67 7-16 (54)
159 cd00730 rubredoxin Rubredoxin; 20.3 66 0.0014 22.9 1.4 11 223-233 2-12 (50)
160 PF09845 DUF2072: Zn-ribbon co 20.1 56 0.0012 28.5 1.2 10 58-67 3-12 (131)
No 1
>KOG1074|consensus
Probab=99.95 E-value=5.8e-29 Score=262.76 Aligned_cols=160 Identities=19% Similarity=0.397 Sum_probs=99.4
Q ss_pred CccccccccccCCChHHHHHHHhhhcCCCCCccccccCccccccccccccccccC-CcccCCccCCcCCChhhhhccccc
Q psy2875 192 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHG-NPYMCNHCFLMFPDEKNLRNHECT 270 (693)
Q Consensus 192 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~C~~C~~~f~~~~~l~~H~~~ 270 (693)
.|-+|-+|-+...-+++|+.|++ .|+||+||+|.+||+.|.++.+|+.|+-+|. +|-. .
T Consensus 604 dPNqCiiC~rVlSC~saLqmHyr-tHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~-------------------R 663 (958)
T KOG1074|consen 604 DPNQCIICLRVLSCPSALQMHYR-THTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPA-------------------R 663 (958)
T ss_pred Cccceeeeeecccchhhhhhhhh-cccCcCccccccccchhccccchhhcccccccCccc-------------------c
Confidence 46789999999999999999999 8999999999999999999999999998885 2210 0
Q ss_pred CcccCC---cccccccchHHHHHHHHHhhccC-CCc----ccccccccccccCcccCCchhhhhhhhcccccCceeeeee
Q psy2875 271 SCFTCP---FCQRKYKIEKHLEKHIESCIQLN-PTT----TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLY 342 (693)
Q Consensus 271 ~~~~C~---~C~k~f~~~~~l~~H~~~~~~~~-~~~----~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~ 342 (693)
..+.|+ +|.+.|.....|..|++++.... +.. ...-...+|..|.+.|.....+..++..+.+..
T Consensus 664 ~q~ScP~~~ic~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~------- 736 (958)
T KOG1074|consen 664 VQFSCPSTFICQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPE------- 736 (958)
T ss_pred ccccCCchhhhcccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcc-------
Confidence 234555 66666666666666666644211 111 000112345555555555555555554443331
Q ss_pred cCeeecCCccccccccccCCCc----ccccCCCCccCCCchhhhhh
Q psy2875 343 CHKVFKKSTSFDKHMEHHNRNV----LHKCHLCTKAYPSEKNLDRH 384 (693)
Q Consensus 343 C~k~f~~~~~L~~H~~~h~~~~----~~~C~~C~k~f~~~~~L~~H 384 (693)
+......+.+.+.++. +..+..|+..+.....+..+
T Consensus 737 ------s~~~~~~~~~t~t~~~~~tp~~~e~~~~~~~~~e~~i~~~ 776 (958)
T KOG1074|consen 737 ------SEPDEQMDERTETEELDVTPPPPENSCGRELEGEMAISVR 776 (958)
T ss_pred ------cCCcccccccccccccccCCCccccccccccCcccccccc
Confidence 1223333334444433 55666666666655554443
No 2
>KOG1074|consensus
Probab=99.95 E-value=3e-29 Score=264.89 Aligned_cols=223 Identities=21% Similarity=0.408 Sum_probs=141.6
Q ss_pred cccccCCCCccCCCchhhhhhhhhccCCcccccCccccccCChhHhhhccccccc-----ccccCC---CCccccCChHH
Q psy2875 364 VLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-----KFHKCT---QCEESFKNKKH 435 (693)
Q Consensus 364 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-----k~~~C~---~C~k~f~~~~~ 435 (693)
.|-+|-+|.+...-++.|+.|.++|+||+||+|.+||++|.++.+|+.||.+|.. -.+.|+ +|.+.|.+...
T Consensus 604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~ 683 (958)
T KOG1074|consen 604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVT 683 (958)
T ss_pred CccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccc
Confidence 3567777777777777777777777777777777777777777777777777753 347777 77777877777
Q ss_pred HHHHHHhccCC-C------------ccccCcCcccccchhHHHHHHHhc----------------CCCC----ceecccc
Q psy2875 436 LKQHLLAHEKV-K------------VFHCPKCPKLFRHESHLQNHVIVH----------------DESE----VHKCLYC 482 (693)
Q Consensus 436 L~~H~~~h~~~-~------------~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~----~~~C~~C 482 (693)
|..|+++|.+. . .=+|..|.+.|.....+..++.-| +++. +..+..|
T Consensus 684 lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~ 763 (958)
T KOG1074|consen 684 LPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSC 763 (958)
T ss_pred ccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCcccccc
Confidence 77777777632 1 135777777777776666666544 2222 4567777
Q ss_pred CccccchhhHHHHH-----------------------HhhCCCCcc-cCCcCcccCCChhHHH----HH---H-------
Q psy2875 483 FKVFVHKAHLDKHL-----------------------ILHETSEMH-NCDFCHLTFTTDNDLI----RH---M------- 524 (693)
Q Consensus 483 ~k~f~~~~~L~~H~-----------------------~~H~~~~~~-~C~~C~~~f~~~~~L~----~H---~------- 524 (693)
+..+.....+..+- ..++++++. .+.+++---....... .- +
T Consensus 764 ~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t 843 (958)
T KOG1074|consen 764 GRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLAT 843 (958)
T ss_pred ccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccccc
Confidence 77766655444332 123445555 4555543322211000 00 0
Q ss_pred ----hhhc-------------------C----CCCcccccccccccCChHhHHHHHhccCC---CcccccchhhcCChHH
Q psy2875 525 ----RSHE-------------------E----YHTKHTCDICGEKFINDLKLKAHIKIIHN---LFTCIHCGDTLNNAKD 574 (693)
Q Consensus 525 ----~~H~-------------------~----~~~~~~C~~C~~~f~~~~~L~~H~~~~H~---~~~C~~C~~~f~~~~~ 574 (693)
.++. + ......|.+||+.|...+.|..|++ +|+ ||.|.+|++.|..+.+
T Consensus 844 ~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~r-THtg~KPF~C~fC~~aFttrgn 922 (958)
T KOG1074|consen 844 KTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMR-THTGPKPFFCHFCEEAFTTRGN 922 (958)
T ss_pred ccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhh-cCCCCCCccchhhhhhhhhhhh
Confidence 0000 0 0011568888888888888888887 665 7888888888888888
Q ss_pred HHHHhhhhcCCCC
Q psy2875 575 YASHLLIIHNIES 587 (693)
Q Consensus 575 l~~H~~~h~~~~~ 587 (693)
|+.||.+|+...|
T Consensus 923 LKvHMgtH~w~q~ 935 (958)
T KOG1074|consen 923 LKVHMGTHMWVQP 935 (958)
T ss_pred hhhhhccccccCC
Confidence 8888887776644
No 3
>KOG2462|consensus
Probab=99.94 E-value=5.4e-28 Score=226.75 Aligned_cols=132 Identities=28% Similarity=0.555 Sum_probs=101.8
Q ss_pred cccCCCCccccCChHHHHHHHHhccC---CCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHH
Q psy2875 420 FHKCTQCEESFKNKKHLKQHLLAHEK---VKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHL 496 (693)
Q Consensus 420 ~~~C~~C~k~f~~~~~L~~H~~~h~~---~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~ 496 (693)
.|+|+.||+.+.+.++|.+|..+|-. .+.+.|++|||.|.....|+.|+++|+ -|.+|.+|||.|.+..-|+-|+
T Consensus 130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHi 207 (279)
T KOG2462|consen 130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHI 207 (279)
T ss_pred ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhccc
Confidence 45666666666666666666666532 456778888888888888888888776 5778888888888888888888
Q ss_pred HhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHh
Q psy2875 497 ILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIK 554 (693)
Q Consensus 497 ~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~ 554 (693)
|+|||||||.|+.|+++|..+++|+.||.+|.+. |+|+|..|+|+|..++.|.+|..
T Consensus 208 RTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~-K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 208 RTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDV-KKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred ccccCCCCccCCcccchhcchHHHHHHHHhhcCC-ccccCcchhhHHHHHHHHHHhhh
Confidence 8888888888888888888888888888888777 78888888888888888888876
No 4
>KOG2462|consensus
Probab=99.93 E-value=2.9e-27 Score=221.88 Aligned_cols=133 Identities=35% Similarity=0.631 Sum_probs=77.5
Q ss_pred cccccCCCCccCCCchhhhhhhhhccC---CcccccCccccccCChhHhhhcccccccccccCCCCccccCChHHHHHHH
Q psy2875 364 VLHKCHLCTKAYPSEKNLDRHLLTHNV---RRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHL 440 (693)
Q Consensus 364 ~~~~C~~C~k~f~~~~~L~~H~~~H~~---~~~~~C~~C~k~f~~~~~L~~H~~~h~~k~~~C~~C~k~f~~~~~L~~H~ 440 (693)
..|+|+.|++.+.+.++|.+|..+|-. .+.+.|++||+.|.+...|..|+++|+ -+++|.+|||.|...+.|+-|+
T Consensus 129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGHi 207 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFSRPWLLQGHI 207 (279)
T ss_pred CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC-CCcccccccccccchHHhhccc
Confidence 346666666666666666666666532 344555555555555555555555554 4455555555555555555555
Q ss_pred HhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHH
Q psy2875 441 LAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI 497 (693)
Q Consensus 441 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~ 497 (693)
|+|+|||||.|+.|+|+|.++++|+.||++|++.|+|+|..|+|+|..++-|.+|..
T Consensus 208 RTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 208 RTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred ccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence 555555555555555555555555555555555555555555555555555555543
No 5
>KOG3608|consensus
Probab=99.93 E-value=2.7e-26 Score=219.42 Aligned_cols=230 Identities=25% Similarity=0.559 Sum_probs=191.9
Q ss_pred CccccccCChhHhhhcccccc-------------cc-cccC--CCCccccCChHHHHHHHHhccCCCccccCcCcccccc
Q psy2875 397 KSCGRRFESEELLIVHQVIHE-------------RK-FHKC--TQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRH 460 (693)
Q Consensus 397 ~~C~k~f~~~~~L~~H~~~h~-------------~k-~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~ 460 (693)
..|+..|.+...+..|...|. ++ .+.| ..|.+.|.+++.|+.|++.|+++|...|+.||.-|++
T Consensus 140 edCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~ 219 (467)
T KOG3608|consen 140 EDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRT 219 (467)
T ss_pred hhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhcc
Confidence 456677777666666665552 22 3566 4699999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcC--CCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccc
Q psy2875 461 ESHLQNHVIVHD--ESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDI 538 (693)
Q Consensus 461 ~~~L~~H~~~H~--~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~ 538 (693)
+..|..|++.-+ ...+|+|..|.|.|.+...|..|++.|-. -|+|+.|+.+....+.|.+|++.-+..++||+|+.
T Consensus 220 ~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~ 297 (467)
T KOG3608|consen 220 KTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDE 297 (467)
T ss_pred ccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccc
Confidence 999999997654 56799999999999999999999999955 49999999999999999999987555569999999
Q ss_pred cccccCChHhHHHHHhccCC--Cccccc--chhhcCChHHHHHHhhhhc-CCCC----hhhhhhhhhcCchHHHHHhhhh
Q psy2875 539 CGEKFINDLKLKAHIKIIHN--LFTCIH--CGDTLNNAKDYASHLLIIH-NIES----SQQVEKNLNNMYNLLTTHIEYH 609 (693)
Q Consensus 539 C~~~f~~~~~L~~H~~~~H~--~~~C~~--C~~~f~~~~~l~~H~~~h~-~~~~----c~~c~~~f~~~~~~l~~h~~~h 609 (693)
|++.|.+.+.|.+|.. +|+ .|.|+. |.++|.+...|++|++.+| |..| |..|++.|++- .+|.+|.+.-
T Consensus 298 Cd~~c~~esdL~kH~~-~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G-~~L~~HL~kk 375 (467)
T KOG3608|consen 298 CDTRCVRESDLAKHVQ-VHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSG-KSLSAHLMKK 375 (467)
T ss_pred hhhhhccHHHHHHHHH-hccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccc-hhHHHHHHHh
Confidence 9999999999999999 777 799988 9999999999999999998 5555 99999999999 9999997654
Q ss_pred c------CCCCCcCCCCCCCCceeeccc
Q psy2875 610 H------SQNNIESESNQSSGFMYNDET 631 (693)
Q Consensus 610 ~------~~~~~~c~~c~~~~~~~~~~~ 631 (693)
+ |-+.|.=.+|+ .|++--+..
T Consensus 376 H~f~~PsGh~RFtYk~~e-dG~mRLqt~ 402 (467)
T KOG3608|consen 376 HGFRLPSGHKRFTYKVDE-DGFMRLQTT 402 (467)
T ss_pred hcccCCCCCCceeeeecc-Cceeeeeee
Confidence 4 44444444442 366654444
No 6
>KOG3608|consensus
Probab=99.93 E-value=2.3e-26 Score=219.93 Aligned_cols=217 Identities=25% Similarity=0.532 Sum_probs=156.3
Q ss_pred cccC--CCCccCCCchhhhhhhhhccC------------Ccc-ccc--CccccccCChhHhhhcccccc-cccccCCCCc
Q psy2875 366 HKCH--LCTKAYPSEKNLDRHLLTHNV------------RRS-FRC--KSCGRRFESEELLIVHQVIHE-RKFHKCTQCE 427 (693)
Q Consensus 366 ~~C~--~C~k~f~~~~~L~~H~~~H~~------------~~~-~~C--~~C~k~f~~~~~L~~H~~~h~-~k~~~C~~C~ 427 (693)
|.|. .|+..|.+...+..|+..|.. ++| +.| .-|-+.|.+++.|..|.+.|+ +|...|+.||
T Consensus 135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg 214 (467)
T KOG3608|consen 135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCG 214 (467)
T ss_pred hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHH
Confidence 4453 367777777777766655521 112 333 346677777777777777775 6667777777
Q ss_pred cccCChHHHHHHHHhcc--CCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHH-hhCCCCc
Q psy2875 428 ESFKNKKHLKQHLLAHE--KVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI-LHETSEM 504 (693)
Q Consensus 428 k~f~~~~~L~~H~~~h~--~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~ 504 (693)
..|.++..|-.|++.-+ ...+|.|..|.|.|.+...|..|+..|-+ .|+|+.|+.+....++|..|++ .|...+|
T Consensus 215 ~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkp 292 (467)
T KOG3608|consen 215 ELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKP 292 (467)
T ss_pred HHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCCC
Confidence 77777777777765433 34578888888888888888888877754 5788888888888888888877 4667788
Q ss_pred ccCCcCcccCCChhHHHHHHhhhcCCCCcccccc--cccccCChHhHHHHHhccCC-----CcccccchhhcCChHHHHH
Q psy2875 505 HNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDI--CGEKFINDLKLKAHIKIIHN-----LFTCIHCGDTLNNAKDYAS 577 (693)
Q Consensus 505 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~-----~~~C~~C~~~f~~~~~l~~ 577 (693)
|+|+.|++.|.+.++|.+|..+|. + ..|+|+. |..+|.+...|+.|++.+|. +|+|-.|++.|++..+|.+
T Consensus 293 fKCd~Cd~~c~~esdL~kH~~~HS-~-~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~ 370 (467)
T KOG3608|consen 293 FKCDECDTRCVRESDLAKHVQVHS-K-TVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSA 370 (467)
T ss_pred ccccchhhhhccHHHHHHHHHhcc-c-cceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHH
Confidence 888888888888888888888776 3 6788877 88888888888888877773 6888888888888888888
Q ss_pred HhhhhcCCC
Q psy2875 578 HLLIIHNIE 586 (693)
Q Consensus 578 H~~~h~~~~ 586 (693)
|++..|+-+
T Consensus 371 HL~kkH~f~ 379 (467)
T KOG3608|consen 371 HLMKKHGFR 379 (467)
T ss_pred HHHHhhccc
Confidence 877777643
No 7
>KOG3623|consensus
Probab=99.88 E-value=2.4e-23 Score=216.30 Aligned_cols=79 Identities=24% Similarity=0.463 Sum_probs=77.4
Q ss_pred CceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHh
Q psy2875 475 EVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIK 554 (693)
Q Consensus 475 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~ 554 (693)
.+|.|+.|+|.|...++|.+|.--|+|.+||+|.+|.|+|+.+-.|..|+|.|.|+ |||+|+.|+|.|+...+..+||.
T Consensus 893 gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGE-KPfQCdKClKRFSHSGSYSQHMN 971 (1007)
T KOG3623|consen 893 GMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGE-KPFQCDKCLKRFSHSGSYSQHMN 971 (1007)
T ss_pred ccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCC-CcchhhhhhhhcccccchHhhhc
Confidence 46999999999999999999999999999999999999999999999999999999 99999999999999999999997
No 8
>KOG3623|consensus
Probab=99.87 E-value=2.9e-23 Score=215.64 Aligned_cols=77 Identities=27% Similarity=0.573 Sum_probs=73.4
Q ss_pred CcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHhccCC---CcccccchhhcCChHHHHHHh
Q psy2875 503 EMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN---LFTCIHCGDTLNNAKDYASHL 579 (693)
Q Consensus 503 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~---~~~C~~C~~~f~~~~~l~~H~ 579 (693)
.+|.|++|+|.|...+.|.+|.--|+|. +||+|.+|.|+|..+..|..|+| .|. ||.|+.|+++|+..+++..||
T Consensus 893 gmyaCDqCDK~FqKqSSLaRHKYEHsGq-RPyqC~iCkKAFKHKHHLtEHkR-LHSGEKPfQCdKClKRFSHSGSYSQHM 970 (1007)
T KOG3623|consen 893 GMYACDQCDKAFQKQSSLARHKYEHSGQ-RPYQCIICKKAFKHKHHLTEHKR-LHSGEKPFQCDKCLKRFSHSGSYSQHM 970 (1007)
T ss_pred ccchHHHHHHHHHhhHHHHHhhhhhcCC-CCcccchhhHhhhhhhhhhhhhh-hccCCCcchhhhhhhhcccccchHhhh
Confidence 4699999999999999999999999999 99999999999999999999999 665 999999999999999999999
Q ss_pred hh
Q psy2875 580 LI 581 (693)
Q Consensus 580 ~~ 581 (693)
.-
T Consensus 971 NH 972 (1007)
T KOG3623|consen 971 NH 972 (1007)
T ss_pred cc
Confidence 75
No 9
>KOG3576|consensus
Probab=99.70 E-value=5.7e-18 Score=150.39 Aligned_cols=112 Identities=31% Similarity=0.613 Sum_probs=73.3
Q ss_pred CceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHh
Q psy2875 475 EVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIK 554 (693)
Q Consensus 475 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~ 554 (693)
..|.|.+|+|.|.-..-|.+|++-|...+.|-|..||++|....+|++|+|+|+|. +||+|..|+++|..+-+|..|++
T Consensus 116 d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgv-rpykc~~c~kaftqrcsleshl~ 194 (267)
T KOG3576|consen 116 DSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGV-RPYKCSLCEKAFTQRCSLESHLK 194 (267)
T ss_pred CeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCc-cccchhhhhHHHHhhccHHHHHH
Confidence 34555555555555555555655555556666666666666666666666666665 66666666666666666666666
Q ss_pred ccCC-------------CcccccchhhcCChHHHHHHhhhhcCCCC
Q psy2875 555 IIHN-------------LFTCIHCGDTLNNAKDYASHLLIIHNIES 587 (693)
Q Consensus 555 ~~H~-------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 587 (693)
.+|. .|.|+.||.+-.....+..|+..||+.-|
T Consensus 195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp 240 (267)
T KOG3576|consen 195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP 240 (267)
T ss_pred HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence 5554 47788888888888888888888776644
No 10
>KOG3576|consensus
Probab=99.65 E-value=3.4e-17 Score=145.50 Aligned_cols=111 Identities=26% Similarity=0.468 Sum_probs=81.4
Q ss_pred cccccCCCCccccCChHHHHHHHHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHH
Q psy2875 418 RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI 497 (693)
Q Consensus 418 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~ 497 (693)
...|.|.+|+|.|.-...|.+|++-|...+.|.|..|||.|...-+|++|+++|+|.+||+|..|+|+|++.-+|..|++
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~ 194 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK 194 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence 44577888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred hhCCC-----------CcccCCcCcccCCChhHHHHHHhhhc
Q psy2875 498 LHETS-----------EMHNCDFCHLTFTTDNDLIRHMRSHE 528 (693)
Q Consensus 498 ~H~~~-----------~~~~C~~C~~~f~~~~~L~~H~~~H~ 528 (693)
.-+|. +.|.|+.||.+-.....+..|++.|+
T Consensus 195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~h 236 (267)
T KOG3576|consen 195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHH 236 (267)
T ss_pred HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcC
Confidence 55553 33444444444444444444444443
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.28 E-value=4.3e-12 Score=135.43 Aligned_cols=145 Identities=21% Similarity=0.467 Sum_probs=99.4
Q ss_pred cccCccccccCChhHhhhcccccccccccCCC--CccccCChHHHHHHHHhccCCCccccCcCcccccchhHHHHHHHhc
Q psy2875 394 FRCKSCGRRFESEELLIVHQVIHERKFHKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471 (693)
Q Consensus 394 ~~C~~C~k~f~~~~~L~~H~~~h~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H 471 (693)
-.|+.|....... .|..|...-....-.|+. |+..|. +..+. +.+.|+.|++.|. .+.|..|+.++
T Consensus 408 V~C~NC~~~i~l~-~l~lHe~~C~r~~V~Cp~~~Cg~v~~-r~el~---------~H~~C~~Cgk~f~-~s~LekH~~~~ 475 (567)
T PLN03086 408 VECRNCKHYIPSR-SIALHEAYCSRHNVVCPHDGCGIVLR-VEEAK---------NHVHCEKCGQAFQ-QGEMEKHMKVF 475 (567)
T ss_pred EECCCCCCccchh-HHHHHHhhCCCcceeCCcccccceee-ccccc---------cCccCCCCCCccc-hHHHHHHHHhc
Confidence 3577777665543 444666544445556764 777773 22333 3357888888885 57788888877
Q ss_pred CCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCC----------ChhHHHHHHhhhcCCCCccccccccc
Q psy2875 472 DESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFT----------TDNDLIRHMRSHEEYHTKHTCDICGE 541 (693)
Q Consensus 472 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~----------~~~~L~~H~~~H~~~~~~~~C~~C~~ 541 (693)
+ +|+.|+ ||+.+ .+..|..|+.+|.+.+|+.|..|++.|. ..+.|..|..+. |. +++.|..||+
T Consensus 476 H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~-rt~~C~~Cgk 549 (567)
T PLN03086 476 H--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GS-RTAPCDSCGR 549 (567)
T ss_pred C--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CC-cceEccccCC
Confidence 5 678888 88654 5678888888888888888888888874 235788888875 55 7888888887
Q ss_pred ccCChHhHHHHHhccC
Q psy2875 542 KFINDLKLKAHIKIIH 557 (693)
Q Consensus 542 ~f~~~~~L~~H~~~~H 557 (693)
.|.. ..|..|+...|
T Consensus 550 ~Vrl-rdm~~H~~~~h 564 (567)
T PLN03086 550 SVML-KEMDIHQIAVH 564 (567)
T ss_pred eeee-hhHHHHHHHhh
Confidence 7654 45777776555
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.15 E-value=9.4e-11 Score=125.33 Aligned_cols=143 Identities=17% Similarity=0.431 Sum_probs=111.9
Q ss_pred cccCCCCccCCCchhhhhhhhhccCCcccccCc--cccccCChhHhhhcccccccccccCCCCccccCChHHHHHHHHhc
Q psy2875 366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKS--CGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAH 443 (693)
Q Consensus 366 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~h~~k~~~C~~C~k~f~~~~~L~~H~~~h 443 (693)
-.|+-|....+ ...|..|...-.- ..-.|+. ||..|. +..+..| +.|+.|++.|. ...|..|+.++
T Consensus 408 V~C~NC~~~i~-l~~l~lHe~~C~r-~~V~Cp~~~Cg~v~~-r~el~~H--------~~C~~Cgk~f~-~s~LekH~~~~ 475 (567)
T PLN03086 408 VECRNCKHYIP-SRSIALHEAYCSR-HNVVCPHDGCGIVLR-VEEAKNH--------VHCEKCGQAFQ-QGEMEKHMKVF 475 (567)
T ss_pred EECCCCCCccc-hhHHHHHHhhCCC-cceeCCcccccceee-ccccccC--------ccCCCCCCccc-hHHHHHHHHhc
Confidence 46888987655 4556778754332 3456884 999884 3344444 58999999996 67899999998
Q ss_pred cCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCcccc----------chhhHHHHHHhhCCCCcccCCcCccc
Q psy2875 444 EKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFV----------HKAHLDKHLILHETSEMHNCDFCHLT 513 (693)
Q Consensus 444 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~----------~~~~L~~H~~~H~~~~~~~C~~C~~~ 513 (693)
+ +|+.|+ ||+.+ .+..|..|+.+|.+++|+.|.+|++.|. ..+.|..|..+. |.+++.|..||+.
T Consensus 476 H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~ 550 (567)
T PLN03086 476 H--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRS 550 (567)
T ss_pred C--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCe
Confidence 5 899999 99755 6799999999999999999999999995 245899999986 9999999999988
Q ss_pred CCChhHHHHHHhh
Q psy2875 514 FTTDNDLIRHMRS 526 (693)
Q Consensus 514 f~~~~~L~~H~~~ 526 (693)
|.. .+|..|+..
T Consensus 551 Vrl-rdm~~H~~~ 562 (567)
T PLN03086 551 VML-KEMDIHQIA 562 (567)
T ss_pred eee-hhHHHHHHH
Confidence 764 457777654
No 13
>PHA00733 hypothetical protein
Probab=99.01 E-value=2.9e-10 Score=99.17 Aligned_cols=53 Identities=25% Similarity=0.516 Sum_probs=23.0
Q ss_pred CCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHhccC
Q psy2875 502 SEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIH 557 (693)
Q Consensus 502 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H 557 (693)
++||.|+.||+.|.+...|..|++.| . .+|.|++|++.|.....|..|+...|
T Consensus 71 ~kPy~C~~Cgk~Fss~s~L~~H~r~h--~-~~~~C~~CgK~F~~~~sL~~H~~~~h 123 (128)
T PHA00733 71 VSPYVCPLCLMPFSSSVSLKQHIRYT--E-HSKVCPVCGKEFRNTDSTLDHVCKKH 123 (128)
T ss_pred CCCccCCCCCCcCCCHHHHHHHHhcC--C-cCccCCCCCCccCCHHHHHHHHHHhc
Confidence 34444444444444444444444433 1 23444444444444444444444333
No 14
>PHA00733 hypothetical protein
Probab=99.01 E-value=2.6e-10 Score=99.52 Aligned_cols=53 Identities=26% Similarity=0.518 Sum_probs=27.5
Q ss_pred CcccccccccccCChHhHHHHHhccCCCcccccchhhcCChHHHHHHhhhhcC
Q psy2875 532 TKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHN 584 (693)
Q Consensus 532 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~C~~C~~~f~~~~~l~~H~~~h~~ 584 (693)
+||.|+.||+.|.+...|..|++.+-.+|.|+.||++|.....|.+|+...|+
T Consensus 72 kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence 45555555555555555555555211245555555555555555555555544
No 15
>PHA02768 hypothetical protein; Provisional
Probab=98.75 E-value=3.3e-09 Score=75.31 Aligned_cols=42 Identities=19% Similarity=0.543 Sum_probs=22.2
Q ss_pred ccccccccccCChhHHHHHHHhhcCCCceeccccccccCCchhH
Q psy2875 57 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNL 100 (693)
Q Consensus 57 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~~L 100 (693)
|.|++||+.|+..++|..||++|+ +||+|..|++.|...+.|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence 455555555555555555555554 455555555555544444
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.72 E-value=5.5e-09 Score=74.18 Aligned_cols=21 Identities=24% Similarity=0.645 Sum_probs=7.7
Q ss_pred ccccCccccchhhHHHHHHhh
Q psy2875 479 CLYCFKVFVHKAHLDKHLILH 499 (693)
Q Consensus 479 C~~C~k~f~~~~~L~~H~~~H 499 (693)
|+.||+.|+..++|..|+++|
T Consensus 8 C~~CGK~Fs~~~~L~~H~r~H 28 (55)
T PHA02768 8 CPICGEIYIKRKSMITHLRKH 28 (55)
T ss_pred cchhCCeeccHHHHHHHHHhc
Confidence 333333333333333333333
No 17
>KOG3993|consensus
Probab=98.69 E-value=2.7e-09 Score=106.28 Aligned_cols=187 Identities=17% Similarity=0.212 Sum_probs=114.9
Q ss_pred ccccCccccccCChhHhhhcccccc-cccccCCCCccccCChHHHHHHHHhccC--------CCccccCcCcccccchhH
Q psy2875 393 SFRCKSCGRRFESEELLIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEK--------VKVFHCPKCPKLFRHESH 463 (693)
Q Consensus 393 ~~~C~~C~k~f~~~~~L~~H~~~h~-~k~~~C~~C~k~f~~~~~L~~H~~~h~~--------~~~~~C~~C~k~f~~~~~ 463 (693)
.|.|..|...|.+...|.+|.-.-- .-.|+|+.|+|.|+-..+|..|.|.|-. ..|=+ +...+...
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k-----~~~~~rae 341 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPK-----QAVETRAE 341 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChh-----hhhhhhhh
Confidence 4888888888888888888853221 2348888888888888888888887732 11100 00000000
Q ss_pred HHHHHHh--cCCCCceeccccCccccchhhHHHHHHhhCCCC-----------------cccCCcCcccCCChhHHHHHH
Q psy2875 464 LQNHVIV--HDESEVHKCLYCFKVFVHKAHLDKHLILHETSE-----------------MHNCDFCHLTFTTDNDLIRHM 524 (693)
Q Consensus 464 L~~H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~-----------------~~~C~~C~~~f~~~~~L~~H~ 524 (693)
.+.=-+. -..+.-|.|.+|+|.|.+...|++|+.+|.... .+.|..|+..+.....--.+.
T Consensus 342 ~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~v 421 (500)
T KOG3993|consen 342 VQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEV 421 (500)
T ss_pred hhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccce
Confidence 0000000 022335788888888888888888877664321 144556665555444433444
Q ss_pred hhhcCCCCcccccccccccCChHhHHHHHhccCC--CcccccchhhcCChHHHHHHhhhhcC
Q psy2875 525 RSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN--LFTCIHCGDTLNNAKDYASHLLIIHN 584 (693)
Q Consensus 525 ~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~--~~~C~~C~~~f~~~~~l~~H~~~h~~ 584 (693)
..+.+....-.|+.||..+.++..--.+.+.-+- .|.|.+|-.+|.+...|.+|+..-|.
T Consensus 422 l~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp 483 (500)
T KOG3993|consen 422 LYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP 483 (500)
T ss_pred eeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence 4443333345678888777777665555543332 58899999999999999999887664
No 18
>KOG3993|consensus
Probab=98.65 E-value=4.2e-09 Score=104.93 Aligned_cols=159 Identities=20% Similarity=0.343 Sum_probs=101.8
Q ss_pred cccccCCCCcccCChhhHHHHhh--hcCCCCCcccccccccccCChhHHHHHHHhhc-----------------------
Q psy2875 26 RKFKCEMCPKSFDHKSNIRRHMA--ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHK----------------------- 80 (693)
Q Consensus 26 ~~~~C~~C~k~f~~~~~L~~H~~--~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~----------------------- 80 (693)
.-|.|..|...|.+...|.+|.- .+| -.|+|++|+|.|+...+|..|.|.|.
T Consensus 266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~---vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~ 342 (500)
T KOG3993|consen 266 GDYICQLCKEKYEDAFALAQHRCPRIVH---VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEV 342 (500)
T ss_pred HHHHHHHHHHhhhhHHHHhhccCCeeEE---eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhh
Confidence 45999999999999999999952 123 35999999999999999999999883
Q ss_pred ----------CCCceeccccccccCCchhHHhhhhcccCCc------------------ccCCccCcccCCchHHHHHHh
Q psy2875 81 ----------GPKIFTCAQCDKAFSLKSNLSKHVRHHMENV------------------KQCKICLEIFEDDEVLEEHVK 132 (693)
Q Consensus 81 ----------~~~~~~C~~C~~~F~~~~~L~~H~~~h~~~~------------------~~C~~C~~~f~~~~~L~~H~~ 132 (693)
.+..|.|.+|++.|.++..|+.|+.+|...+ +-+..|.-.+.....-..+..
T Consensus 343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl 422 (500)
T KOG3993|consen 343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVL 422 (500)
T ss_pred hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccccccccccccccccee
Confidence 1235999999999999999999987776221 123333332222222111111
Q ss_pred hhC--CCcccccccccccCChHHHHhhhhccCCCCCccccCCcccccCChhhHHHHhh
Q psy2875 133 SHQ--NRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGR 188 (693)
Q Consensus 133 ~h~--~~~~~C~~C~~~f~~~~~L~~H~~~~H~~e~~~~C~~C~~~f~~~~~l~~H~~ 188 (693)
.+. .....++.|+..+.++..-..+.+. -..+..|.|.+|.-.|.+...|..|..
T Consensus 423 ~~a~sael~~pp~~~~ppsss~~sgg~~rl-g~~~q~f~~ky~~atfyss~~ltrhin 479 (500)
T KOG3993|consen 423 YVAGSAELELPPYDGSPPSSSGSSGGYGRL-GIAEQGFTCKYCPATFYSSPGLTRHIN 479 (500)
T ss_pred eeeccccccCCCCCCCCcccCCCCCccccc-cchhhccccccchHhhhcCcchHhHhh
Confidence 111 1223456666555555444333331 123445667777777766666666643
No 19
>KOG1146|consensus
Probab=98.58 E-value=2e-08 Score=113.96 Aligned_cols=76 Identities=21% Similarity=0.418 Sum_probs=62.8
Q ss_pred cCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhh-------------------------cCCCc
Q psy2875 30 CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH-------------------------KGPKI 84 (693)
Q Consensus 30 C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H-------------------------~~~~~ 84 (693)
|.-|+..+.+...|..|+...++..+.|+|+.|+..|+....|..|||.- .+.+|
T Consensus 439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p 518 (1406)
T KOG1146|consen 439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP 518 (1406)
T ss_pred ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc
Confidence 44555567777778888887888888999999999999999999999871 13468
Q ss_pred eeccccccccCCchhHHhhhh
Q psy2875 85 FTCAQCDKAFSLKSNLSKHVR 105 (693)
Q Consensus 85 ~~C~~C~~~F~~~~~L~~H~~ 105 (693)
|.|..|..+++.+.+|.+|++
T Consensus 519 ~~C~~C~~stttng~Lsihlq 539 (1406)
T KOG1146|consen 519 YPCRACNYSTTTNGNLSIHLQ 539 (1406)
T ss_pred ccceeeeeeeecchHHHHHHH
Confidence 999999999999999999986
No 20
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.50 E-value=7.4e-08 Score=58.42 Aligned_cols=26 Identities=42% Similarity=0.910 Sum_probs=19.1
Q ss_pred HHHHHHHhhcCCCceeccccccccCC
Q psy2875 71 NLKAHLKMHKGPKIFTCAQCDKAFSL 96 (693)
Q Consensus 71 ~L~~H~~~H~~~~~~~C~~C~~~F~~ 96 (693)
+|..||++|+|++||.|++|+++|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 46777777777777777777777753
No 21
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.48 E-value=1e-07 Score=57.84 Aligned_cols=23 Identities=39% Similarity=0.714 Sum_probs=10.2
Q ss_pred HHHHHHhcCCCCceeccccCccc
Q psy2875 464 LQNHVIVHDESEVHKCLYCFKVF 486 (693)
Q Consensus 464 L~~H~~~H~~~~~~~C~~C~k~f 486 (693)
|..|+++|+|++||+|++|+++|
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F 24 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSF 24 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEE
T ss_pred HHHHhhhcCCCCCCCCCCCcCee
Confidence 34444444444444444444444
No 22
>PHA00732 hypothetical protein
Probab=98.33 E-value=3e-07 Score=72.37 Aligned_cols=44 Identities=30% Similarity=0.630 Sum_probs=23.8
Q ss_pred cccCCcCcccCCChhHHHHHHhh-hcCCCCcccccccccccCChHhHHHHHh
Q psy2875 504 MHNCDFCHLTFTTDNDLIRHMRS-HEEYHTKHTCDICGEKFINDLKLKAHIK 554 (693)
Q Consensus 504 ~~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~~~C~~C~~~f~~~~~L~~H~~ 554 (693)
||.|+.||+.|.+...|..|++. |+ ++.|++||++|. .|..|+.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~----~~~C~~CgKsF~---~l~~H~~ 45 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT----LTKCPVCNKSYR---RLNQHFY 45 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC----CCccCCCCCEeC---Chhhhhc
Confidence 45566666666666666666553 32 235555555555 3555554
No 23
>PHA00616 hypothetical protein
Probab=98.23 E-value=4.6e-07 Score=61.14 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=22.3
Q ss_pred cccccccccccCChhHHHHHHHhhcCCCceeccc
Q psy2875 56 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 89 (693)
Q Consensus 56 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~ 89 (693)
||+|+.||+.|..++.|..|++.|+|++|+.|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 4666666666666666666666666666666654
No 24
>PHA00616 hypothetical protein
Probab=98.22 E-value=5e-07 Score=61.00 Aligned_cols=31 Identities=16% Similarity=0.537 Sum_probs=12.8
Q ss_pred cccCcCcccccchhHHHHHHHhcCCCCceec
Q psy2875 449 FHCPKCPKLFRHESHLQNHVIVHDESEVHKC 479 (693)
Q Consensus 449 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C 479 (693)
|+|+.||+.|.+++.|..|++.|+|++|+.|
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~ 32 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL 32 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence 3444444444444444444444444444333
No 25
>KOG1146|consensus
Probab=98.19 E-value=2.7e-07 Score=105.10 Aligned_cols=89 Identities=7% Similarity=0.077 Sum_probs=56.1
Q ss_pred ccccccccccCChHhHHHHHhccCCCcccccchhhcCChHHHHHHhhhhcCCCChhhhhhhhhcCchHHHHHhhhhcCCC
Q psy2875 534 HTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHSQN 613 (693)
Q Consensus 534 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~c~~c~~~f~~~~~~l~~h~~~h~~~~ 613 (693)
+.|.+|++.|.....+. |+- .-.+|.|..|...|...+.|..|.+. |-+.|... ..+.-+...+..-.
T Consensus 1261 ~~c~~~~~~~~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~l~~~~~k---------~~~~~~~~-~~~~~~~l~~~d~~ 1328 (1406)
T KOG1146|consen 1261 GECGAVDELLTPSFGIS-TLD-VTHRYLCRQCKMAFDGEAPLTAHQRK---------FCFAGRGS-GGSMPPPLRVPDCT 1328 (1406)
T ss_pred chhhhccccccCcccee-ecc-cchhHHHHHHHhhhcchhHHHHHHHH---------HHhccCcc-ccCCCCcccCcccc
Confidence 77888888888888877 766 33368888888888888888888733 22333333 33444444444444
Q ss_pred CCcCCCCCCCCceeecccccccccc
Q psy2875 614 NIESESNQSSGFMYNDETSSYSHIK 638 (693)
Q Consensus 614 ~~~c~~c~~~~~~~~~~~~~~~h~~ 638 (693)
+| |..| ...|.+...|..|++
T Consensus 1329 ~~-c~~c---~~~~~~~~alqihm~ 1349 (1406)
T KOG1146|consen 1329 YH-CLAC---EVLLSGREALQIHMR 1349 (1406)
T ss_pred cc-chHH---HhhcchhHHHHHHHH
Confidence 44 5554 455555555555554
No 26
>PHA00732 hypothetical protein
Probab=98.15 E-value=1.5e-06 Score=68.51 Aligned_cols=47 Identities=30% Similarity=0.646 Sum_probs=27.7
Q ss_pred ccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhh
Q psy2875 27 KFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 79 (693)
Q Consensus 27 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H 79 (693)
||.|++||+.|.+.++|..|++..|++ +.|++||++|. .|..|++..
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~~ 47 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYSQ 47 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhccc
Confidence 466666666666666666666533432 45666666665 355555444
No 27
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.81 E-value=2.5e-05 Score=57.07 Aligned_cols=51 Identities=27% Similarity=0.472 Sum_probs=38.2
Q ss_pred ccccCCCCcccCChhhHHHHhhhcCCCC-CcccccccccccCChhHHHHHHHhhc
Q psy2875 27 KFKCEMCPKSFDHKSNIRRHMAATHDLQ-KKYKCKLCARMYRYKWNLKAHLKMHK 80 (693)
Q Consensus 27 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~-k~~~C~~C~~~f~~~~~L~~H~~~H~ 80 (693)
.|.|+.|++ -.+...|..|....|..+ +.+.|++|...+. .+|..|+..++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 378888888 455778888887778765 4688888887654 47888887764
No 28
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.72 E-value=3.7e-05 Score=56.20 Aligned_cols=51 Identities=22% Similarity=0.526 Sum_probs=29.7
Q ss_pred cccCCcCcccCCChhHHHHHHhh-hcCCCCcccccccccccCChHhHHHHHhccC
Q psy2875 504 MHNCDFCHLTFTTDNDLIRHMRS-HEEYHTKHTCDICGEKFINDLKLKAHIKIIH 557 (693)
Q Consensus 504 ~~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H 557 (693)
.|.|++||+. .+...|..|... |..+.+.+.|++|...+. ..|..|+...|
T Consensus 2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 3667777773 445667777543 444445667777766533 36666666544
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.43 E-value=8.1e-05 Score=43.74 Aligned_cols=20 Identities=40% Similarity=0.846 Sum_probs=8.4
Q ss_pred ccCcCcccccchhHHHHHHH
Q psy2875 450 HCPKCPKLFRHESHLQNHVI 469 (693)
Q Consensus 450 ~C~~C~k~f~~~~~L~~H~~ 469 (693)
.|+.|++.|.+++.|..|++
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHh
Confidence 34444444444444444443
No 30
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.39 E-value=0.00012 Score=43.01 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=11.7
Q ss_pred eeccccCccccchhhHHHHHHh
Q psy2875 477 HKCLYCFKVFVHKAHLDKHLIL 498 (693)
Q Consensus 477 ~~C~~C~k~f~~~~~L~~H~~~ 498 (693)
|+|+.|++.|.+++.|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 4455555555555555555544
No 31
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.33 E-value=9.1e-05 Score=62.43 Aligned_cols=73 Identities=23% Similarity=0.480 Sum_probs=16.6
Q ss_pred ccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceeccccccccCCchhHHhhhhcc
Q psy2875 29 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107 (693)
Q Consensus 29 ~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~~L~~H~~~h 107 (693)
.|..|+..|.+...|..||...|....+ ....+.....|..+++.-. ...+.|.+|++.|.+...|..||+.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Cccccccccccccccccccccccccccc-----ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 4778888888888888888766654322 1112223344444443321 22577777777777777777777643
No 32
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.11 E-value=0.00026 Score=41.91 Aligned_cols=23 Identities=22% Similarity=0.621 Sum_probs=10.8
Q ss_pred cccccchhhcCChHHHHHHhhhh
Q psy2875 560 FTCIHCGDTLNNAKDYASHLLII 582 (693)
Q Consensus 560 ~~C~~C~~~f~~~~~l~~H~~~h 582 (693)
|.|++||+.|.+...|..|++++
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 34555555555555555555544
No 33
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.05 E-value=0.00032 Score=59.03 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=0.0
Q ss_pred ccccccccCChhHHHHHHHhh
Q psy2875 59 CKLCARMYRYKWNLKAHLKMH 79 (693)
Q Consensus 59 C~~C~~~f~~~~~L~~H~~~H 79 (693)
|.+|+..|.....|..||...
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~ 22 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKK 22 (100)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 555555555555555555443
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.01 E-value=0.00034 Score=41.41 Aligned_cols=21 Identities=33% Similarity=0.903 Sum_probs=9.6
Q ss_pred ccccccccccCChHhHHHHHh
Q psy2875 534 HTCDICGEKFINDLKLKAHIK 554 (693)
Q Consensus 534 ~~C~~C~~~f~~~~~L~~H~~ 554 (693)
|.|++|++.|.+...|..|++
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~ 21 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMR 21 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHH
Confidence 345555555555555555554
No 35
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.96 E-value=0.0004 Score=42.58 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=11.4
Q ss_pred cccccchhhcCChHHHHHHhhhh
Q psy2875 560 FTCIHCGDTLNNAKDYASHLLII 582 (693)
Q Consensus 560 ~~C~~C~~~f~~~~~l~~H~~~h 582 (693)
|.|+.|++.|.+...|..|++.|
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCccCCccCChhHHHHHhHHh
Confidence 44555555555555555554444
No 36
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.90 E-value=0.00029 Score=68.26 Aligned_cols=72 Identities=22% Similarity=0.433 Sum_probs=45.2
Q ss_pred CCcccccC--CCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceeccccccccCCchhHH
Q psy2875 24 QERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLS 101 (693)
Q Consensus 24 ~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~~L~ 101 (693)
++|||+|+ -|+|.+.+...|+.|+.--|...+...=+ +-..|.-.-...|||.|++|+|.+.+...|+
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p----------~p~~~~~F~~~~KPYrCevC~KRYKNlNGLK 415 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP----------SPEKMNIFSAKDKPYRCEVCDKRYKNLNGLK 415 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCC----------CccccccccccCCceeccccchhhccCccce
Confidence 45899997 58899999999999987555333221111 0000111112457888888888888888888
Q ss_pred hhhh
Q psy2875 102 KHVR 105 (693)
Q Consensus 102 ~H~~ 105 (693)
.|..
T Consensus 416 YHr~ 419 (423)
T COG5189 416 YHRK 419 (423)
T ss_pred eccc
Confidence 7764
No 37
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.78 E-value=0.0009 Score=41.00 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=8.3
Q ss_pred eeccccCccccchhhHHHHHH
Q psy2875 477 HKCLYCFKVFVHKAHLDKHLI 497 (693)
Q Consensus 477 ~~C~~C~k~f~~~~~L~~H~~ 497 (693)
|+|..|++.|.+...|..|++
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~ 22 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKR 22 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHC
T ss_pred CCCCccCCccCChhHHHHHhH
Confidence 334444444444444444433
No 38
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.77 E-value=0.00041 Score=67.24 Aligned_cols=54 Identities=24% Similarity=0.468 Sum_probs=35.9
Q ss_pred CCCcccCCc--CcccCCChhHHHHHHhhhc------------------CCCCcccccccccccCChHhHHHHHh
Q psy2875 501 TSEMHNCDF--CHLTFTTDNDLIRHMRSHE------------------EYHTKHTCDICGEKFINDLKLKAHIK 554 (693)
Q Consensus 501 ~~~~~~C~~--C~~~f~~~~~L~~H~~~H~------------------~~~~~~~C~~C~~~f~~~~~L~~H~~ 554 (693)
++|||+|++ |+|+++....|+.|+.--+ .++|||.|++|+|.+.....|+-|+.
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence 358999987 9999999999999976311 11255666666666655555555543
No 39
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.76 E-value=0.00087 Score=46.31 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=19.2
Q ss_pred CcccccchhhcCChHHHHHHhhhhcCCCC
Q psy2875 559 LFTCIHCGDTLNNAKDYASHLLIIHNIES 587 (693)
Q Consensus 559 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 587 (693)
|-+|++|+..+.+..+|++|+.+.|+.+|
T Consensus 24 PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 24 PATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp -EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred CCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 67788888888888888888888777665
No 40
>KOG2231|consensus
Probab=96.34 E-value=0.0026 Score=69.75 Aligned_cols=151 Identities=19% Similarity=0.314 Sum_probs=93.1
Q ss_pred eeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccccccc---------ccCChH
Q psy2875 477 HKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE---------KFINDL 547 (693)
Q Consensus 477 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~---------~f~~~~ 547 (693)
+.|.+|++.|.-.. .--.|..| -.|.+...|+.|++.-+ +.+.|.+|-. .-.++.
T Consensus 100 ~~C~~C~~~~~~~~------------~~~~~~~c-~~~~s~~~Lk~H~~~~H---~~~~c~lC~~~~kif~~e~k~Yt~~ 163 (669)
T KOG2231|consen 100 HSCHICDRRFRALY------------NKKECLHC-TEFKSVENLKNHMRDQH---KLHLCSLCLQNLKIFINERKLYTRA 163 (669)
T ss_pred hhcCccccchhhhc------------ccCCCccc-cchhHHHHHHHHHHHhh---hhhccccccccceeeeeeeehehHH
Confidence 67888887763211 22358888 78888999999995433 4466666533 234566
Q ss_pred hHHHHHhccC------C-CcccccchhhcCChHHHHHHhhhhcCCCC-hh---hhhhhhhcCchHHHHHhhhhcCCCCCc
Q psy2875 548 KLKAHIKIIH------N-LFTCIHCGDTLNNAKDYASHLLIIHNIES-SQ---QVEKNLNNMYNLLTTHIEYHHSQNNIE 616 (693)
Q Consensus 548 ~L~~H~~~~H------~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-c~---~c~~~f~~~~~~l~~h~~~h~~~~~~~ 616 (693)
.|..|+..-- . --.|..|...|-...+|.+|++.+|-.-- |+ .++.-|+.- ..|..|.|.++ |.
T Consensus 164 el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~-~dLe~HfR~~H----fl 238 (669)
T KOG2231|consen 164 ELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDY-DDLEEHFRKGH----FL 238 (669)
T ss_pred HHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccc-hHHHHHhhhcC----cc
Confidence 7788876211 1 13688999999999999999988775522 42 122334444 88888887655 66
Q ss_pred CC--CCCCCCceeecccccccccc--------cCCcccc--ccccc
Q psy2875 617 SE--SNQSSGFMYNDETSSYSHIK--------QEDDSCD--TYMDD 650 (693)
Q Consensus 617 c~--~c~~~~~~~~~~~~~~~h~~--------~~~~~~~--~~~~~ 650 (693)
|+ .|- ++.|...-.+..+++ |.-|-|+ .-|..
T Consensus 239 CE~~~C~--~~~f~~~~~~ei~lk~~~~~~~~e~~~~~~~~r~Gr~ 282 (669)
T KOG2231|consen 239 CEEEFCR--TKKFYVAFELEIELKAHNRFIQHEKCYICRPSRPGRP 282 (669)
T ss_pred ccccccc--cceeeehhHHHHHHHhhccccchheeccCCcccCCCC
Confidence 87 563 455554433333222 6666665 44444
No 41
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.22 E-value=0.0034 Score=43.48 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=12.1
Q ss_pred CCcccccccccccCChhHHHHHHHhhcCCC
Q psy2875 54 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83 (693)
Q Consensus 54 ~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~ 83 (693)
+.|-.|++|+..+....+|.+|+.++++.+
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence 344445555555555555555554444443
No 42
>KOG2231|consensus
Probab=96.00 E-value=0.012 Score=64.73 Aligned_cols=52 Identities=29% Similarity=0.636 Sum_probs=32.8
Q ss_pred ccCCccCcccCCchHHHHHHhhhCCCccccccc------ccccCChHHHHhhhhccCCCCCccccC
Q psy2875 112 KQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCC------ERIFTSETRMRNHIDMKHADENLFKCK 171 (693)
Q Consensus 112 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C------~~~f~~~~~L~~H~~~~H~~e~~~~C~ 171 (693)
-.|..|...|-....|.+|++.++ |.|..| +.-|.....|..|.+..| |.|+
T Consensus 183 p~C~~C~~~fld~~el~rH~~~~h---~~chfC~~~~~~neyy~~~~dLe~HfR~~H-----flCE 240 (669)
T KOG2231|consen 183 PLCKFCHERFLDDDELYRHLRFDH---EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH-----FLCE 240 (669)
T ss_pred ccchhhhhhhccHHHHHHhhccce---eheeecCcccccchhcccchHHHHHhhhcC-----cccc
Confidence 357777777777777777776544 334444 345666777777777555 5565
No 43
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.96 E-value=0.0064 Score=36.45 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=9.3
Q ss_pred cCCcCcccCCChhHHHHHHhh
Q psy2875 506 NCDFCHLTFTTDNDLIRHMRS 526 (693)
Q Consensus 506 ~C~~C~~~f~~~~~L~~H~~~ 526 (693)
.|+.|++.|.+...|..|++.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~ 22 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMRT 22 (26)
T ss_pred CCCCCcchhCCHHHHHHHHHH
Confidence 344444444444444444443
No 44
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.96 E-value=0.0056 Score=36.71 Aligned_cols=23 Identities=17% Similarity=0.573 Sum_probs=12.9
Q ss_pred cccccchhhcCChHHHHHHhhhh
Q psy2875 560 FTCIHCGDTLNNAKDYASHLLII 582 (693)
Q Consensus 560 ~~C~~C~~~f~~~~~l~~H~~~h 582 (693)
|.|+.|+++|.+...|..|+++|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 34555666665555555555543
No 45
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.91 E-value=0.0042 Score=36.77 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=15.4
Q ss_pred cccccchhhcCChHHHHHHhhhhcC
Q psy2875 560 FTCIHCGDTLNNAKDYASHLLIIHN 584 (693)
Q Consensus 560 ~~C~~C~~~f~~~~~l~~H~~~h~~ 584 (693)
|.|+.|+++.. ...|.+|++++|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 56777777776 7777777777664
No 46
>PRK04860 hypothetical protein; Provisional
Probab=95.70 E-value=0.0055 Score=55.68 Aligned_cols=39 Identities=23% Similarity=0.798 Sum_probs=30.7
Q ss_pred cccccccccccCChhHHHHHHHhhcCCCceeccccccccCCch
Q psy2875 56 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKS 98 (693)
Q Consensus 56 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~ 98 (693)
+|.|. |+. ....+.+|.++|+++++|.|..|+..|....
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 58887 887 6777888888888888888888888776543
No 47
>PRK04860 hypothetical protein; Provisional
Probab=95.51 E-value=0.0075 Score=54.82 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCCCceeccccCccc
Q psy2875 463 HLQNHVIVHDESEVHKCLYCFKVF 486 (693)
Q Consensus 463 ~L~~H~~~H~~~~~~~C~~C~k~f 486 (693)
.++.|.++|+++++|.|..|+..|
T Consensus 130 ~~rrH~ri~~g~~~YrC~~C~~~l 153 (160)
T PRK04860 130 TVRRHNRVVRGEAVYRCRRCGETL 153 (160)
T ss_pred HHHHHHHHhcCCccEECCCCCcee
Confidence 333344444443344444443333
No 48
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.47 E-value=0.018 Score=56.83 Aligned_cols=91 Identities=29% Similarity=0.518 Sum_probs=61.2
Q ss_pred chhhHHHHHHhhCCCCc----ccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccc-------cCChHhHHHHHhcc
Q psy2875 488 HKAHLDKHLILHETSEM----HNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEK-------FINDLKLKAHIKII 556 (693)
Q Consensus 488 ~~~~L~~H~~~H~~~~~----~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~-------f~~~~~L~~H~~~~ 556 (693)
++..|+.|...=..+.. -.|..|...|-.-..|.+|+|.-+. .|-+|++. |....+|..|-+..
T Consensus 200 ~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE-----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~ 274 (493)
T COG5236 200 RSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHE-----ACHICDMVGPIRYQYFKSYEDLEAHFRNA 274 (493)
T ss_pred ecccccccccCCccccCcCCCchhhhccceecChHHHHHHHHhhhh-----hhhhhhccCccchhhhhCHHHHHHHhhcC
Confidence 34556666543222212 2588888888888888888886554 26666653 88888999998744
Q ss_pred CCCccccc--ch----hhcCChHHHHHHhhhhcCC
Q psy2875 557 HNLFTCIH--CG----DTLNNAKDYASHLLIIHNI 585 (693)
Q Consensus 557 H~~~~C~~--C~----~~f~~~~~l~~H~~~h~~~ 585 (693)
| |.|.+ |- ..|....+|..|+...|+.
T Consensus 275 h--y~ct~qtc~~~k~~vf~~~~el~~h~~~~h~~ 307 (493)
T COG5236 275 H--YCCTFQTCRVGKCYVFPYHTELLEHLTRFHKV 307 (493)
T ss_pred c--eEEEEEEEecCcEEEeccHHHHHHHHHHHhhc
Confidence 4 66643 32 4788889999998877764
No 49
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.97 E-value=0.0057 Score=66.89 Aligned_cols=61 Identities=34% Similarity=0.573 Sum_probs=33.7
Q ss_pred cccCCCCccccCChHHHHHHHH--hccCC--CccccC--cCcccccchhHHHHHHHhcCCCCceecc
Q psy2875 420 FHKCTQCEESFKNKKHLKQHLL--AHEKV--KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCL 480 (693)
Q Consensus 420 ~~~C~~C~k~f~~~~~L~~H~~--~h~~~--~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 480 (693)
++.|..|...|.....|..|.+ .|+++ +|+.|+ .|++.|.+...|..|..+|++..++.+.
T Consensus 289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T COG5048 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK 355 (467)
T ss_pred CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence 4555555555555555555555 45555 555555 4555555555555555555555554444
No 50
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=94.96 E-value=0.013 Score=34.92 Aligned_cols=17 Identities=24% Similarity=0.810 Sum_probs=6.1
Q ss_pred ccccccccCChhHHHHH
Q psy2875 59 CKLCARMYRYKWNLKAH 75 (693)
Q Consensus 59 C~~C~~~f~~~~~L~~H 75 (693)
|++|++.|.+...|..|
T Consensus 3 C~~C~~~f~s~~~~~~H 19 (25)
T PF12874_consen 3 CDICNKSFSSENSLRQH 19 (25)
T ss_dssp ETTTTEEESSHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHH
Confidence 33333333333333333
No 51
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=94.78 E-value=0.016 Score=34.59 Aligned_cols=22 Identities=41% Similarity=0.910 Sum_probs=13.2
Q ss_pred eeccccccccCCchhHHhhhhc
Q psy2875 85 FTCAQCDKAFSLKSNLSKHVRH 106 (693)
Q Consensus 85 ~~C~~C~~~F~~~~~L~~H~~~ 106 (693)
|.|++|++.|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 4566666666666666666553
No 52
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.46 E-value=0.013 Score=63.98 Aligned_cols=149 Identities=21% Similarity=0.360 Sum_probs=108.5
Q ss_pred cccccCCCCcccCChhhHHHHhhh-cCCCC--Cccccc--ccccccCChhHHHHHHHhhcCCCceeccc--cccccCCch
Q psy2875 26 RKFKCEMCPKSFDHKSNIRRHMAA-THDLQ--KKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKS 98 (693)
Q Consensus 26 ~~~~C~~C~k~f~~~~~L~~H~~~-~H~~~--k~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~F~~~~ 98 (693)
.++.|..|...|.....|.+|.+. .|+++ +++.|+ .|++.|.....|..|..+|++..++.+.. +...+....
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence 479999999999999999999885 79999 899999 79999999999999999999888887765 444444443
Q ss_pred hHHhhh------hcccCCcccCC--ccCcccCCchHHHHHHhhhC---CCcccccccccccCChHHHHhhhhccCCCCCc
Q psy2875 99 NLSKHV------RHHMENVKQCK--ICLEIFEDDEVLEEHVKSHQ---NRRFKCPCCERIFTSETRMRNHIDMKHADENL 167 (693)
Q Consensus 99 ~L~~H~------~~h~~~~~~C~--~C~~~f~~~~~L~~H~~~h~---~~~~~C~~C~~~f~~~~~L~~H~~~~H~~e~~ 167 (693)
.-..+. ..+....+.+. .|...+.....+..|...+. ...+.+..|.+.|.....|..|++ .|....+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 446 (467)
T COG5048 368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKK-IHTNHAP 446 (467)
T ss_pred CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccc-ccccCCc
Confidence 321111 12223334442 36667777777777776665 335778899999999999999987 6666666
Q ss_pred cccCCccc
Q psy2875 168 FKCKKCLK 175 (693)
Q Consensus 168 ~~C~~C~~ 175 (693)
+.|..+..
T Consensus 447 ~~~~~~~~ 454 (467)
T COG5048 447 LLCSILKS 454 (467)
T ss_pred eeeccccc
Confidence 55554443
No 53
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=93.84 E-value=0.03 Score=34.17 Aligned_cols=21 Identities=33% Similarity=0.912 Sum_probs=16.7
Q ss_pred cccCCCCcccCChhhHHHHhh
Q psy2875 28 FKCEMCPKSFDHKSNIRRHMA 48 (693)
Q Consensus 28 ~~C~~C~k~f~~~~~L~~H~~ 48 (693)
|.|+.|++.|.+...|..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 678888888888888888875
No 54
>KOG2785|consensus
Probab=93.59 E-value=0.11 Score=52.71 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=40.7
Q ss_pred ceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccc---cccCChHhHHHH
Q psy2875 476 VHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICG---EKFINDLKLKAH 552 (693)
Q Consensus 476 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~---~~f~~~~~L~~H 552 (693)
|-.|-.|++.|.+...-..||..++|-- .=+. .-.+....|..=+..--+ .-|.|-.|+ +.|.+....+.|
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~Hgff--IPdr--eYL~D~~GLl~YLgeKV~--~~~~CL~CN~~~~~f~sleavr~H 239 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKEHGFF--IPDR--EYLTDEKGLLKYLGEKVG--IGFICLFCNELGRPFSSLEAVRAH 239 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhccCCc--CCch--HhhhchhHHHHHHHHHhc--cCceEEEeccccCcccccHHHHHH
Confidence 4556667777666666666766665521 0000 001112222222221111 347888888 888888889999
Q ss_pred Hhc
Q psy2875 553 IKI 555 (693)
Q Consensus 553 ~~~ 555 (693)
|..
T Consensus 240 M~~ 242 (390)
T KOG2785|consen 240 MRD 242 (390)
T ss_pred Hhh
Confidence 873
No 55
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=93.55 E-value=0.037 Score=33.73 Aligned_cols=22 Identities=41% Similarity=0.892 Sum_probs=13.3
Q ss_pred eeccccccccCCchhHHhhhhc
Q psy2875 85 FTCAQCDKAFSLKSNLSKHVRH 106 (693)
Q Consensus 85 ~~C~~C~~~F~~~~~L~~H~~~ 106 (693)
|.|.+|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 4566666666666666666553
No 56
>KOG2482|consensus
Probab=92.70 E-value=0.14 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.797 Sum_probs=16.0
Q ss_pred eeccccccccCCchhHHhhhhc
Q psy2875 85 FTCAQCDKAFSLKSNLSKHVRH 106 (693)
Q Consensus 85 ~~C~~C~~~F~~~~~L~~H~~~ 106 (693)
+.|-+|.+.|..+..|+.|||.
T Consensus 196 ~~CLyCekifrdkntLkeHMrk 217 (423)
T KOG2482|consen 196 LRCLYCEKIFRDKNTLKEHMRK 217 (423)
T ss_pred heeeeeccccCCcHHHHHHHHh
Confidence 6777777777777777777753
No 57
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.58 E-value=0.18 Score=50.04 Aligned_cols=79 Identities=29% Similarity=0.505 Sum_probs=40.6
Q ss_pred ccccc--cccccCChhHHHHHHHhhcCCCceecccccc---ccC------CchhHHhhhhccc-C----CcccCCccCcc
Q psy2875 57 YKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDK---AFS------LKSNLSKHVRHHM-E----NVKQCKICLEI 120 (693)
Q Consensus 57 ~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~---~F~------~~~~L~~H~~~h~-~----~~~~C~~C~~~ 120 (693)
|.|+. |..+......|..|.+.-++. +.|.+|-. .|. ++..|..|...-. + .--.|..|...
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~ 229 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIY 229 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccce
Confidence 56664 666666666777777765442 56666632 222 3334444433222 1 11235555555
Q ss_pred cCCchHHHHHHhhhCCC
Q psy2875 121 FEDDEVLEEHVKSHQNR 137 (693)
Q Consensus 121 f~~~~~L~~H~~~h~~~ 137 (693)
|-+...|..|+|.-+++
T Consensus 230 FYdDDEL~~HcR~~HE~ 246 (493)
T COG5236 230 FYDDDELRRHCRLRHEA 246 (493)
T ss_pred ecChHHHHHHHHhhhhh
Confidence 55555555555544443
No 58
>KOG2785|consensus
Probab=90.59 E-value=0.5 Score=48.14 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=41.8
Q ss_pred CcccccccccccCChHhHHHHHhccCC-------------------------Ccccccch---hhcCChHHHHHHhhh
Q psy2875 532 TKHTCDICGEKFINDLKLKAHIKIIHN-------------------------LFTCIHCG---DTLNNAKDYASHLLI 581 (693)
Q Consensus 532 ~~~~C~~C~~~f~~~~~L~~H~~~~H~-------------------------~~~C~~C~---~~f~~~~~l~~H~~~ 581 (693)
-|-.|-.|++.|.+...-..||...|. -|.|-.|+ +.|.+......||+.
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 357788888888888888888887776 26799998 999999999999986
No 59
>KOG2893|consensus
Probab=90.08 E-value=0.11 Score=48.73 Aligned_cols=45 Identities=27% Similarity=0.637 Sum_probs=29.4
Q ss_pred CcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHH
Q psy2875 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAH 75 (693)
Q Consensus 25 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H 75 (693)
+||| |-.|++.|.+..-|..|++. |-|+|.+|.+.+-+--.|..|
T Consensus 9 ~kpw-cwycnrefddekiliqhqka-----khfkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 9 DKPW-CWYCNREFDDEKILIQHQKA-----KHFKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred CCce-eeecccccchhhhhhhhhhh-----ccceeeeehhhhccCCCceee
Confidence 4555 77777777777777777663 337777777665555555555
No 60
>KOG4173|consensus
Probab=89.85 E-value=0.13 Score=47.26 Aligned_cols=76 Identities=24% Similarity=0.592 Sum_probs=39.6
Q ss_pred ccCCc--CcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHhccCC------------Cccc--ccchhh
Q psy2875 505 HNCDF--CHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN------------LFTC--IHCGDT 568 (693)
Q Consensus 505 ~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~------------~~~C--~~C~~~ 568 (693)
|.|++ |...|........|-.+-++. .|..|.+.|.+..-|..|+...|. .|.| ..|+..
T Consensus 80 ~~cqvagc~~~~d~lD~~E~hY~~~h~~----sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K 155 (253)
T KOG4173|consen 80 FACQVAGCCQVFDALDDYEHHYHTLHGN----SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK 155 (253)
T ss_pred ccccccchHHHHhhhhhHHHhhhhcccc----hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence 44444 444454444444444333232 355555555555555555544443 3556 456666
Q ss_pred cCChHHHHHHhhhhcC
Q psy2875 569 LNNAKDYASHLLIIHN 584 (693)
Q Consensus 569 f~~~~~l~~H~~~h~~ 584 (693)
|.+...-+.||...|.
T Consensus 156 FkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 156 FKTSRDRKDHMIRMHK 171 (253)
T ss_pred hhhhhhhhhHHHHhcc
Confidence 6666666666655553
No 61
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=89.78 E-value=0.25 Score=29.45 Aligned_cols=17 Identities=29% Similarity=0.690 Sum_probs=7.4
Q ss_pred ccccccccCChhHHHHHH
Q psy2875 59 CKLCARMYRYKWNLKAHL 76 (693)
Q Consensus 59 C~~C~~~f~~~~~L~~H~ 76 (693)
|+.||+.| ....|..|+
T Consensus 5 C~~CgR~F-~~~~l~~H~ 21 (25)
T PF13913_consen 5 CPICGRKF-NPDRLEKHE 21 (25)
T ss_pred CCCCCCEE-CHHHHHHHH
Confidence 44444444 334444443
No 62
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=88.94 E-value=0.29 Score=31.80 Aligned_cols=22 Identities=23% Similarity=0.738 Sum_probs=16.8
Q ss_pred ccccCCCCcccCChhhHHHHhh
Q psy2875 27 KFKCEMCPKSFDHKSNIRRHMA 48 (693)
Q Consensus 27 ~~~C~~C~k~f~~~~~L~~H~~ 48 (693)
+|.|++|++.|.+...+..|+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 5778888888887777777765
No 63
>KOG2482|consensus
Probab=88.68 E-value=0.51 Score=47.01 Aligned_cols=107 Identities=20% Similarity=0.360 Sum_probs=65.4
Q ss_pred cccCCccCcccC-CchHHHHHH-hhhC---C-------------------CcccccccccccCChHHHHhhhhcc-CCCC
Q psy2875 111 VKQCKICLEIFE-DDEVLEEHV-KSHQ---N-------------------RRFKCPCCERIFTSETRMRNHIDMK-HADE 165 (693)
Q Consensus 111 ~~~C~~C~~~f~-~~~~L~~H~-~~h~---~-------------------~~~~C~~C~~~f~~~~~L~~H~~~~-H~~e 165 (693)
..+|-.|...+. +++....|+ .+|. . .+++|-.|.+.|+.+..|+.||+.. |..-
T Consensus 144 slqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrri 223 (423)
T KOG2482|consen 144 SLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRRI 223 (423)
T ss_pred eeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCccc
Confidence 457999988765 556677776 3453 1 2589999999999999999999854 3222
Q ss_pred CccccCCcccccC--------C----hhhHH-----HHhhh---------cC-Cc--cccccccccCCChHHHHHHHhhh
Q psy2875 166 NLFKCKKCLKVFS--------D----EIKFH-----LHGRA---------HA-KF--YRCSECEKRFATEDIMRQHFRNY 216 (693)
Q Consensus 166 ~~~~C~~C~~~f~--------~----~~~l~-----~H~~~---------h~-~~--~~C~~C~~~f~~~~~l~~H~~~~ 216 (693)
.|- =.+-++-|. + .+.+. .+... +. .+ ..|-.|.....+...|..||+.+
T Consensus 224 nPk-nreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~v 302 (423)
T KOG2482|consen 224 NPK-NREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIV 302 (423)
T ss_pred CCC-ccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHH
Confidence 220 011111110 0 00110 00000 01 22 47999999999999999999988
Q ss_pred cC
Q psy2875 217 HN 218 (693)
Q Consensus 217 H~ 218 (693)
|.
T Consensus 303 He 304 (423)
T KOG2482|consen 303 HE 304 (423)
T ss_pred HH
Confidence 83
No 64
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=88.51 E-value=0.29 Score=31.80 Aligned_cols=22 Identities=27% Similarity=0.809 Sum_probs=13.8
Q ss_pred cccccccccccCChHhHHHHHh
Q psy2875 533 KHTCDICGEKFINDLKLKAHIK 554 (693)
Q Consensus 533 ~~~C~~C~~~f~~~~~L~~H~~ 554 (693)
+|.|++|++.|.....+..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 4566666666666666666654
No 65
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=88.38 E-value=0.43 Score=28.43 Aligned_cols=8 Identities=75% Similarity=1.809 Sum_probs=3.1
Q ss_pred cccccccc
Q psy2875 536 CDICGEKF 543 (693)
Q Consensus 536 C~~C~~~f 543 (693)
|+.||+.|
T Consensus 5 C~~CgR~F 12 (25)
T PF13913_consen 5 CPICGRKF 12 (25)
T ss_pred CCCCCCEE
Confidence 33333333
No 66
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.13 E-value=1.1 Score=37.60 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=11.2
Q ss_pred ccccCccccccCChhHhhhccccc
Q psy2875 393 SFRCKSCGRRFESEELLIVHQVIH 416 (693)
Q Consensus 393 ~~~C~~C~k~f~~~~~L~~H~~~h 416 (693)
.|+|+.|...|-..-.+..|..+|
T Consensus 81 ~y~C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 81 RYVCAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred ceeCCCCCCccccccchhhhhhcc
Confidence 455555555554444444444333
No 67
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.51 E-value=1.6 Score=36.82 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=7.4
Q ss_pred ccccCccccccCChhHh
Q psy2875 393 SFRCKSCGRRFESEELL 409 (693)
Q Consensus 393 ~~~C~~C~k~f~~~~~L 409 (693)
|-.|++||-...+...|
T Consensus 15 P~~CpiCgLtLVss~HL 31 (112)
T TIGR00622 15 PVECPICGLTLILSTHL 31 (112)
T ss_pred CCcCCcCCCEEeccchH
Confidence 44444444444444333
No 68
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=84.04 E-value=0.58 Score=30.04 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=4.1
Q ss_pred CccccCcCc
Q psy2875 447 KVFHCPKCP 455 (693)
Q Consensus 447 ~~~~C~~C~ 455 (693)
.++.||.||
T Consensus 16 ~~~~CP~Cg 24 (33)
T cd00350 16 APWVCPVCG 24 (33)
T ss_pred CCCcCcCCC
Confidence 344444444
No 69
>KOG2893|consensus
Probab=84.00 E-value=0.31 Score=45.73 Aligned_cols=51 Identities=25% Similarity=0.474 Sum_probs=40.5
Q ss_pred CcccccccccccCChHhHHHHHhccCCCcccccchhhcCChHHHHHHhhhhcCC
Q psy2875 532 TKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNI 585 (693)
Q Consensus 532 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 585 (693)
||| |-.|+..|.....|.+|++..| |+|.+|-+...+--.|..|-...|.|
T Consensus 10 kpw-cwycnrefddekiliqhqkakh--fkchichkkl~sgpglsihcmqvhke 60 (341)
T KOG2893|consen 10 KPW-CWYCNREFDDEKILIQHQKAKH--FKCHICHKKLFSGPGLSIHCMQVHKE 60 (341)
T ss_pred Cce-eeecccccchhhhhhhhhhhcc--ceeeeehhhhccCCCceeehhhhhhh
Confidence 555 8899999999999999998666 99999988888888888874444443
No 70
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=83.97 E-value=0.75 Score=29.50 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.1
Q ss_pred cccCCcCc
Q psy2875 504 MHNCDFCH 511 (693)
Q Consensus 504 ~~~C~~C~ 511 (693)
|+.|++||
T Consensus 17 ~~~CP~Cg 24 (33)
T cd00350 17 PWVCPVCG 24 (33)
T ss_pred CCcCcCCC
Confidence 33344443
No 71
>KOG4173|consensus
Probab=79.97 E-value=0.62 Score=42.90 Aligned_cols=76 Identities=24% Similarity=0.570 Sum_probs=53.2
Q ss_pred cccccC--CCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhh----------cCCCceeccc--cc
Q psy2875 26 RKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH----------KGPKIFTCAQ--CD 91 (693)
Q Consensus 26 ~~~~C~--~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H----------~~~~~~~C~~--C~ 91 (693)
+.|.|+ -|...|........|....|+. .|.+|.+.|.+..-|..|+..- .|...|.|-+ |+
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~----sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt 153 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN----SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCT 153 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccc----hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhh
Confidence 457777 4667788888777887666653 6888888888888888886432 2455677753 77
Q ss_pred cccCCchhHHhhhh
Q psy2875 92 KAFSLKSNLSKHVR 105 (693)
Q Consensus 92 ~~F~~~~~L~~H~~ 105 (693)
..|.+..+.+.|+-
T Consensus 154 ~KFkT~r~RkdH~I 167 (253)
T KOG4173|consen 154 EKFKTSRDRKDHMI 167 (253)
T ss_pred hhhhhhhhhhhHHH
Confidence 77777777777753
No 72
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.49 E-value=0.37 Score=46.62 Aligned_cols=41 Identities=29% Similarity=0.671 Sum_probs=28.0
Q ss_pred CcccccccccccCChHhHHHHHhccCC------------C-----cccccchhhcCCh
Q psy2875 532 TKHTCDICGEKFINDLKLKAHIKIIHN------------L-----FTCIHCGDTLNNA 572 (693)
Q Consensus 532 ~~~~C~~C~~~f~~~~~L~~H~~~~H~------------~-----~~C~~C~~~f~~~ 572 (693)
+.+.|++|++.|.++..+....+.... | .+|+.||.+|...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 567788888887777666655553221 2 4799999988765
No 73
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=78.08 E-value=0.93 Score=32.15 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=20.8
Q ss_pred CCCcccccCCCCcccCChhhHHHHhhhcC
Q psy2875 23 IQERKFKCEMCPKSFDHKSNIRRHMAATH 51 (693)
Q Consensus 23 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~H 51 (693)
.||-.++|+-||..|....+..+|....|
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence 46677777777777777777777776444
No 74
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=77.17 E-value=1.2 Score=31.65 Aligned_cols=27 Identities=30% Similarity=0.637 Sum_probs=21.5
Q ss_pred CcccccchhhcCChHHHHHHhhhhcCC
Q psy2875 559 LFTCIHCGDTLNNAKDYASHLLIIHNI 585 (693)
Q Consensus 559 ~~~C~~C~~~f~~~~~l~~H~~~h~~~ 585 (693)
.+.|+-||..|....++.+|+...|+-
T Consensus 17 ~lrCPRC~~~FR~~K~Y~RHVNKaH~~ 43 (65)
T COG4049 17 FLRCPRCGMVFRRRKDYIRHVNKAHGW 43 (65)
T ss_pred eeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence 477888888888888888888877753
No 75
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=76.99 E-value=2.8 Score=35.67 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.8
Q ss_pred ccc----ccchhhcCChHHHHHHhhhhcC
Q psy2875 560 FTC----IHCGDTLNNAKDYASHLLIIHN 584 (693)
Q Consensus 560 ~~C----~~C~~~f~~~~~l~~H~~~h~~ 584 (693)
|.| ..|++.+.+...+.+|++.+||
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 889 9999999999999999998886
No 76
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=76.07 E-value=4.3 Score=34.49 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=16.9
Q ss_pred eec----cccCccccchhhHHHHHHhhCC
Q psy2875 477 HKC----LYCFKVFVHKAHLDKHLILHET 501 (693)
Q Consensus 477 ~~C----~~C~k~f~~~~~L~~H~~~H~~ 501 (693)
|.| ..|+..+.+...++.|++.++|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 667 6777777777777777666554
No 77
>KOG2186|consensus
Probab=73.73 E-value=1.6 Score=41.80 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=28.3
Q ss_pred ccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHh
Q psy2875 505 HNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIK 554 (693)
Q Consensus 505 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~ 554 (693)
|.|.+||.... +..|.+|+-.-++ .-|.|-.||+.|.. .+...|..
T Consensus 4 FtCnvCgEsvK-Kp~vekH~srCrn--~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVK-KPQVEKHMSRCRN--AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhcc-ccchHHHHHhccC--CeeEEeeccccccc-chhhhhhh
Confidence 66777776654 3345567666554 45677777777766 55566654
No 78
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=70.04 E-value=3.2 Score=26.82 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=4.0
Q ss_pred eeccccCcc
Q psy2875 477 HKCLYCFKV 485 (693)
Q Consensus 477 ~~C~~C~k~ 485 (693)
|.|..||..
T Consensus 3 ~~C~~CG~i 11 (34)
T cd00729 3 WVCPVCGYI 11 (34)
T ss_pred EECCCCCCE
Confidence 444444433
No 79
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=63.73 E-value=4.5 Score=26.77 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=7.4
Q ss_pred cccCCCCcccCChh
Q psy2875 28 FKCEMCPKSFDHKS 41 (693)
Q Consensus 28 ~~C~~C~k~f~~~~ 41 (693)
+.|+.|+..|.-..
T Consensus 3 ~~CP~C~~~~~v~~ 16 (38)
T TIGR02098 3 IQCPNCKTSFRVVD 16 (38)
T ss_pred EECCCCCCEEEeCH
Confidence 34566665555443
No 80
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=63.43 E-value=4.5 Score=28.21 Aligned_cols=12 Identities=25% Similarity=0.969 Sum_probs=6.8
Q ss_pred ccccCCCCcccC
Q psy2875 27 KFKCEMCPKSFD 38 (693)
Q Consensus 27 ~~~C~~C~k~f~ 38 (693)
.|+|+.||..|.
T Consensus 3 ~y~C~~CG~~~~ 14 (46)
T PRK00398 3 EYKCARCGREVE 14 (46)
T ss_pred EEECCCCCCEEE
Confidence 356666665554
No 81
>PHA00626 hypothetical protein
Probab=62.02 E-value=1.8 Score=30.99 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=8.7
Q ss_pred CcccccchhhcCCh
Q psy2875 559 LFTCIHCGDTLNNA 572 (693)
Q Consensus 559 ~~~C~~C~~~f~~~ 572 (693)
.|+|+.||+.|+..
T Consensus 23 rYkCkdCGY~ft~~ 36 (59)
T PHA00626 23 DYVCCDCGYNDSKD 36 (59)
T ss_pred ceEcCCCCCeechh
Confidence 56666666666543
No 82
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=61.88 E-value=6.6 Score=25.76 Aligned_cols=33 Identities=15% Similarity=0.577 Sum_probs=18.5
Q ss_pred cccCCCCcccCChhhHHHHhhhcCCCCCccccccccccc
Q psy2875 28 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMY 66 (693)
Q Consensus 28 ~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f 66 (693)
..|+.|+..|.-.... +-......+|+.|+..|
T Consensus 3 i~Cp~C~~~y~i~d~~------ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEK------IPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHH------CCCCCcEEECCCCCCEe
Confidence 3567777666655542 22333456677776655
No 83
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=61.28 E-value=5.6 Score=26.24 Aligned_cols=32 Identities=19% Similarity=0.545 Sum_probs=17.5
Q ss_pred ccCCCCcccCChhhHHHHhhhcCCCCCccccccccccc
Q psy2875 29 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMY 66 (693)
Q Consensus 29 ~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f 66 (693)
.|+.|+..|.-..+- +-.+....+|+.|+..|
T Consensus 4 ~CP~C~~~f~v~~~~------l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDK------LPAGGRKVRCPKCGHVF 35 (37)
T ss_pred ECCCCCceEEcCHHH------cccCCcEEECCCCCcEe
Confidence 466666666655431 22233456666666655
No 84
>KOG2186|consensus
Probab=59.26 E-value=6 Score=38.13 Aligned_cols=46 Identities=22% Similarity=0.662 Sum_probs=21.0
Q ss_pred ccccccccccCChhHHHHHHHhhcCCCceeccccccccCCchhHHhhhh
Q psy2875 57 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 105 (693)
Q Consensus 57 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~~L~~H~~ 105 (693)
|.|..||.+.. +..|.+|+-.-++ .-|.|-.||+.|.. .+...|..
T Consensus 4 FtCnvCgEsvK-Kp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVK-KPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhcc-ccchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence 44555554443 2334444444333 33555555555544 44444443
No 85
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=57.57 E-value=6.6 Score=35.88 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=13.6
Q ss_pred cccCCCCccccCChHHHHHHHHhccCCCccccCcCc
Q psy2875 420 FHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCP 455 (693)
Q Consensus 420 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~ 455 (693)
.|.|++||+.+ .|+.|-+||+||
T Consensus 134 ~~vC~vCGy~~-------------~ge~P~~CPiCg 156 (166)
T COG1592 134 VWVCPVCGYTH-------------EGEAPEVCPICG 156 (166)
T ss_pred EEEcCCCCCcc-------------cCCCCCcCCCCC
Confidence 46666666553 245666666666
No 86
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=57.12 E-value=31 Score=33.51 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=7.1
Q ss_pred CCCCceeccccC
Q psy2875 472 DESEVHKCLYCF 483 (693)
Q Consensus 472 ~~~~~~~C~~C~ 483 (693)
+|.+.|+|.+|+
T Consensus 138 hGGrif~CsfC~ 149 (314)
T PF06524_consen 138 HGGRIFKCSFCD 149 (314)
T ss_pred CCCeEEEeecCC
Confidence 355566666664
No 87
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=56.57 E-value=6.8 Score=33.09 Aligned_cols=11 Identities=45% Similarity=1.020 Sum_probs=4.5
Q ss_pred ccccCcCcccc
Q psy2875 448 VFHCPKCPKLF 458 (693)
Q Consensus 448 ~~~C~~C~k~f 458 (693)
|-.||+||..|
T Consensus 26 PivCP~CG~~~ 36 (108)
T PF09538_consen 26 PIVCPKCGTEF 36 (108)
T ss_pred CccCCCCCCcc
Confidence 33344444443
No 88
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=56.30 E-value=7.1 Score=28.47 Aligned_cols=8 Identities=38% Similarity=1.256 Sum_probs=3.5
Q ss_pred Ccccccch
Q psy2875 559 LFTCIHCG 566 (693)
Q Consensus 559 ~~~C~~C~ 566 (693)
+|+|+.||
T Consensus 50 ~Y~Cp~CG 57 (61)
T COG2888 50 PYRCPKCG 57 (61)
T ss_pred ceECCCcC
Confidence 44444444
No 89
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=55.39 E-value=6.3 Score=38.12 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=10.6
Q ss_pred eeeeeecCeeecCCcccccc
Q psy2875 337 LYKCLYCHKVFKKSTSFDKH 356 (693)
Q Consensus 337 ~~~C~~C~k~f~~~~~L~~H 356 (693)
.+.||+|+..|....-+...
T Consensus 5 ~~~CPvC~~~F~~~~vrs~~ 24 (214)
T PF09986_consen 5 KITCPVCGKEFKTKKVRSGK 24 (214)
T ss_pred ceECCCCCCeeeeeEEEcCC
Confidence 45566666666554444333
No 90
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=54.76 E-value=4.5 Score=27.57 Aligned_cols=29 Identities=21% Similarity=0.681 Sum_probs=15.8
Q ss_pred cccCCCCcccCChhhHHHHhhhcCCCCCccccccccc
Q psy2875 28 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCAR 64 (693)
Q Consensus 28 ~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~ 64 (693)
|+|..||..|..... +.. ..+-.|+.||.
T Consensus 6 y~C~~Cg~~fe~~~~-------~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 6 YRCEECGHEFEVLQS-------ISE-DDPVPCPECGS 34 (42)
T ss_pred EEeCCCCCEEEEEEE-------cCC-CCCCcCCCCCC
Confidence 667777766664332 222 34456666665
No 91
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=54.12 E-value=9.1 Score=26.42 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=3.5
Q ss_pred eeccccCcc
Q psy2875 477 HKCLYCFKV 485 (693)
Q Consensus 477 ~~C~~C~k~ 485 (693)
|.|..||..
T Consensus 3 Y~C~~Cg~~ 11 (44)
T smart00659 3 YICGECGRE 11 (44)
T ss_pred EECCCCCCE
Confidence 333334333
No 92
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=53.18 E-value=5.2 Score=31.72 Aligned_cols=10 Identities=50% Similarity=1.222 Sum_probs=3.9
Q ss_pred cccccccccc
Q psy2875 534 HTCDICGEKF 543 (693)
Q Consensus 534 ~~C~~C~~~f 543 (693)
++|..||..|
T Consensus 54 W~C~kCg~~f 63 (89)
T COG1997 54 WKCRKCGAKF 63 (89)
T ss_pred EEcCCCCCee
Confidence 3344444333
No 93
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=52.19 E-value=11 Score=25.99 Aligned_cols=28 Identities=36% Similarity=0.752 Sum_probs=15.2
Q ss_pred CCcccccCCCCcccCC----hhhHHHHhhhcC
Q psy2875 24 QERKFKCEMCPKSFDH----KSNIRRHMAATH 51 (693)
Q Consensus 24 ~~~~~~C~~C~k~f~~----~~~L~~H~~~~H 51 (693)
++...+|..|++.+.. .++|.+|++..|
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence 3455677777777665 367777764333
No 94
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=51.06 E-value=6.1 Score=26.54 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=4.2
Q ss_pred eeccccCccc
Q psy2875 477 HKCLYCFKVF 486 (693)
Q Consensus 477 ~~C~~C~k~f 486 (693)
|+|..||..|
T Consensus 6 y~C~~Cg~~f 15 (41)
T smart00834 6 YRCEDCGHTF 15 (41)
T ss_pred EEcCCCCCEE
Confidence 3444444443
No 95
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=50.85 E-value=8.5 Score=23.17 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=5.5
Q ss_pred ccccccccCC
Q psy2875 195 RCSECEKRFA 204 (693)
Q Consensus 195 ~C~~C~~~f~ 204 (693)
.|+.||..|.
T Consensus 16 ~Cp~CG~~F~ 25 (26)
T PF10571_consen 16 FCPHCGYDFE 25 (26)
T ss_pred cCCCCCCCCc
Confidence 3566665553
No 96
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=50.43 E-value=9.2 Score=34.94 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=6.5
Q ss_pred CCCCcccCCcCc
Q psy2875 500 ETSEMHNCDFCH 511 (693)
Q Consensus 500 ~~~~~~~C~~C~ 511 (693)
.|+.|-.||+||
T Consensus 145 ~ge~P~~CPiCg 156 (166)
T COG1592 145 EGEAPEVCPICG 156 (166)
T ss_pred cCCCCCcCCCCC
Confidence 345555555555
No 97
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=50.12 E-value=17 Score=33.25 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=6.6
Q ss_pred eeccccCccccchhhH
Q psy2875 477 HKCLYCFKVFVHKAHL 492 (693)
Q Consensus 477 ~~C~~C~k~f~~~~~L 492 (693)
|.|+.|+..|+...++
T Consensus 110 Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 110 FICPNMCVRFTFNEAM 125 (158)
T ss_pred EECCCCCcEeeHHHHH
Confidence 4444444444443333
No 98
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=50.00 E-value=14 Score=33.28 Aligned_cols=13 Identities=23% Similarity=0.989 Sum_probs=6.4
Q ss_pred ccccCcCcccccc
Q psy2875 448 VFHCPKCPKLFRH 460 (693)
Q Consensus 448 ~~~C~~C~k~f~~ 460 (693)
-|.||.|+..|..
T Consensus 99 ~Y~Cp~C~~~y~~ 111 (147)
T smart00531 99 YYKCPNCQSKYTF 111 (147)
T ss_pred EEECcCCCCEeeH
Confidence 4555555554443
No 99
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=49.46 E-value=15 Score=33.55 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=8.3
Q ss_pred cccCCCCccccCChHHH
Q psy2875 420 FHKCTQCEESFKNKKHL 436 (693)
Q Consensus 420 ~~~C~~C~k~f~~~~~L 436 (693)
-|.|+.|+..|+...++
T Consensus 109 ~Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 109 FFICPNMCVRFTFNEAM 125 (158)
T ss_pred eEECCCCCcEeeHHHHH
Confidence 34455555555444444
No 100
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=49.23 E-value=15 Score=33.17 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=20.7
Q ss_pred CCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccC
Q psy2875 473 ESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTF 514 (693)
Q Consensus 473 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f 514 (693)
+..-|.|+.|+..|+....+..- .. ...|.|+.||...
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~~~~---d~-~~~f~Cp~Cg~~l 133 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEANQLL---DM-DGTFTCPRCGEEL 133 (147)
T ss_pred CCcEEECcCCCCEeeHHHHHHhc---CC-CCcEECCCCCCEE
Confidence 34457777777777654433220 11 2227777777654
No 101
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=48.50 E-value=7.4 Score=28.48 Aligned_cols=9 Identities=44% Similarity=1.051 Sum_probs=5.0
Q ss_pred Ccccccchh
Q psy2875 559 LFTCIHCGD 567 (693)
Q Consensus 559 ~~~C~~C~~ 567 (693)
+|+|+.||+
T Consensus 48 ~Y~CP~CGF 56 (59)
T PRK14890 48 PYTCPKCGF 56 (59)
T ss_pred ceECCCCCC
Confidence 555555553
No 102
>KOG2272|consensus
Probab=48.12 E-value=8.1 Score=37.01 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=9.9
Q ss_pred cccCCccCcccCCchHHH
Q psy2875 111 VKQCKICLEIFEDDEVLE 128 (693)
Q Consensus 111 ~~~C~~C~~~f~~~~~L~ 128 (693)
-|.|++|.+...+...++
T Consensus 99 CF~Cd~Cn~~Lad~gf~r 116 (332)
T KOG2272|consen 99 CFRCDLCNKHLADQGFYR 116 (332)
T ss_pred cchhHHHHHHHhhhhhHh
Confidence 356666666555554443
No 103
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=47.21 E-value=15 Score=22.14 Aligned_cols=19 Identities=16% Similarity=0.572 Sum_probs=9.8
Q ss_pred cccccccccCChHhHHHHHh
Q psy2875 535 TCDICGEKFINDLKLKAHIK 554 (693)
Q Consensus 535 ~C~~C~~~f~~~~~L~~H~~ 554 (693)
.|++|++.+ ....+..|+.
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 455555555 4445555543
No 104
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=47.01 E-value=14 Score=26.26 Aligned_cols=26 Identities=38% Similarity=0.816 Sum_probs=18.5
Q ss_pred ccccCCCCcccCCh-----hhHHHHhhhcCC
Q psy2875 27 KFKCEMCPKSFDHK-----SNIRRHMAATHD 52 (693)
Q Consensus 27 ~~~C~~C~k~f~~~-----~~L~~H~~~~H~ 52 (693)
.=.|..|++.+... ++|.+|+...|.
T Consensus 18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~ 48 (50)
T smart00614 18 RAKCKYCGKKLSRSSKGGTSNLRRHLRRKHP 48 (50)
T ss_pred EEEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence 45799999888654 588888764443
No 105
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=44.61 E-value=16 Score=41.96 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=5.9
Q ss_pred CCcccCCcCccc
Q psy2875 502 SEMHNCDFCHLT 513 (693)
Q Consensus 502 ~~~~~C~~C~~~ 513 (693)
..|..|+.||-.
T Consensus 473 ~~p~~Cp~Cgs~ 484 (730)
T COG1198 473 PIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCC
Confidence 345555555543
No 106
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=44.15 E-value=14 Score=26.42 Aligned_cols=11 Identities=36% Similarity=1.071 Sum_probs=6.1
Q ss_pred eeeeecCeeec
Q psy2875 338 YKCLYCHKVFK 348 (693)
Q Consensus 338 ~~C~~C~k~f~ 348 (693)
|.|..||..|.
T Consensus 6 y~C~~Cg~~fe 16 (52)
T TIGR02605 6 YRCTACGHRFE 16 (52)
T ss_pred EEeCCCCCEeE
Confidence 55555555554
No 107
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=42.97 E-value=11 Score=33.05 Aligned_cols=25 Identities=24% Similarity=0.680 Sum_probs=14.2
Q ss_pred cccccchhhcCChHHHHHHhhhhcCCCC
Q psy2875 560 FTCIHCGDTLNNAKDYASHLLIIHNIES 587 (693)
Q Consensus 560 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 587 (693)
-.|-+||+.|.. |++|++.|||..|
T Consensus 73 i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 73 IICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred eEEccCCcccch---HHHHHHHccCCCH
Confidence 467777777765 4778888777665
No 108
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=42.95 E-value=8.8 Score=29.66 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=7.5
Q ss_pred Cceecc--ccCccccch
Q psy2875 475 EVHKCL--YCFKVFVHK 489 (693)
Q Consensus 475 ~~~~C~--~C~k~f~~~ 489 (693)
.-++|. .||.+|+..
T Consensus 26 ~Y~qC~N~eCg~tF~t~ 42 (72)
T PRK09678 26 RYHQCQNVNCSATFITY 42 (72)
T ss_pred eeeecCCCCCCCEEEEE
Confidence 344555 555555443
No 109
>PF12907 zf-met2: Zinc-binding
Probab=42.46 E-value=17 Score=24.46 Aligned_cols=32 Identities=28% Similarity=0.572 Sum_probs=22.4
Q ss_pred cccccccccC---CChHHHHHHHhhhcCCCCCccc
Q psy2875 194 YRCSECEKRF---ATEDIMRQHFRNYHNKEDAYVC 225 (693)
Q Consensus 194 ~~C~~C~~~f---~~~~~l~~H~~~~H~~~~~~~C 225 (693)
+.|.+|-..| .+...|.+|....|.+..+-.|
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~~~~~C 36 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHPKNTFEEC 36 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCCCCCHHHc
Confidence 4677887444 5667899998888887654443
No 110
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=42.09 E-value=25 Score=25.83 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=11.5
Q ss_pred hhHHHHHHHhcCCCCceeccc----cCccc
Q psy2875 461 ESHLQNHVIVHDESEVHKCLY----CFKVF 486 (693)
Q Consensus 461 ~~~L~~H~~~H~~~~~~~C~~----C~k~f 486 (693)
+..|..|+..-=..++..|++ |+..+
T Consensus 23 r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~ 52 (60)
T PF02176_consen 23 RKELDDHLENECPKRPVPCPYSPYGCKERV 52 (60)
T ss_dssp CCCHHHHHHTTSTTSEEE-SS----S--EE
T ss_pred HHHHHHHHHccCCCCcEECCCCCCCCCCcc
Confidence 345555555433444555555 55444
No 111
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=42.07 E-value=24 Score=32.93 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=7.3
Q ss_pred ceeccccCccccchhh
Q psy2875 476 VHKCLYCFKVFVHKAH 491 (693)
Q Consensus 476 ~~~C~~C~k~f~~~~~ 491 (693)
-|.|+.|+..|+...+
T Consensus 117 ~Y~Cp~C~~rytf~eA 132 (178)
T PRK06266 117 FFFCPNCHIRFTFDEA 132 (178)
T ss_pred EEECCCCCcEEeHHHH
Confidence 3444444444444443
No 112
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=41.44 E-value=11 Score=34.24 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=5.7
Q ss_pred cccCCCCccCCCc
Q psy2875 366 HKCHLCTKAYPSE 378 (693)
Q Consensus 366 ~~C~~C~k~f~~~ 378 (693)
++|+.||++|.+.
T Consensus 29 ~~c~~c~~~f~~~ 41 (154)
T PRK00464 29 RECLACGKRFTTF 41 (154)
T ss_pred eeccccCCcceEe
Confidence 3444444444433
No 113
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=41.12 E-value=23 Score=33.09 Aligned_cols=17 Identities=24% Similarity=0.639 Sum_probs=8.8
Q ss_pred cccCCCCccccCChHHH
Q psy2875 420 FHKCTQCEESFKNKKHL 436 (693)
Q Consensus 420 ~~~C~~C~k~f~~~~~L 436 (693)
-|.|+.|+..|+...++
T Consensus 117 ~Y~Cp~C~~rytf~eA~ 133 (178)
T PRK06266 117 FFFCPNCHIRFTFDEAM 133 (178)
T ss_pred EEECCCCCcEEeHHHHh
Confidence 45555555555554443
No 114
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=40.62 E-value=12 Score=36.26 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=6.3
Q ss_pred CCCcccccCCCC
Q psy2875 361 NRNVLHKCHLCT 372 (693)
Q Consensus 361 ~~~~~~~C~~C~ 372 (693)
+|.+.|+|..|+
T Consensus 138 hGGrif~CsfC~ 149 (314)
T PF06524_consen 138 HGGRIFKCSFCD 149 (314)
T ss_pred CCCeEEEeecCC
Confidence 444555555554
No 115
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=40.33 E-value=20 Score=41.29 Aligned_cols=12 Identities=17% Similarity=0.229 Sum_probs=6.9
Q ss_pred CCceeccccCcc
Q psy2875 474 SEVHKCLYCFKV 485 (693)
Q Consensus 474 ~~~~~C~~C~k~ 485 (693)
..|..|+.||-.
T Consensus 473 ~~p~~Cp~Cgs~ 484 (730)
T COG1198 473 PIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCC
Confidence 346666666643
No 116
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=40.20 E-value=16 Score=25.78 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=3.8
Q ss_pred eeccccCccc
Q psy2875 477 HKCLYCFKVF 486 (693)
Q Consensus 477 ~~C~~C~k~f 486 (693)
|.|..||+.|
T Consensus 7 Y~C~~Cg~~~ 16 (49)
T COG1996 7 YKCARCGREV 16 (49)
T ss_pred EEhhhcCCee
Confidence 3333333333
No 117
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=39.71 E-value=7.7 Score=29.96 Aligned_cols=14 Identities=21% Similarity=0.714 Sum_probs=6.4
Q ss_pred Cceecc--ccccccCC
Q psy2875 83 KIFTCA--QCDKAFSL 96 (693)
Q Consensus 83 ~~~~C~--~C~~~F~~ 96 (693)
.-+.|. .||.+|..
T Consensus 26 ~Y~qC~N~eCg~tF~t 41 (72)
T PRK09678 26 RYHQCQNVNCSATFIT 41 (72)
T ss_pred eeeecCCCCCCCEEEE
Confidence 334454 45555443
No 118
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=39.38 E-value=18 Score=30.52 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=18.0
Q ss_pred hhhhhhhhhcCchHHHHHhhhhcCCCCCcCCCCCCCCceeecc
Q psy2875 588 SQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQSSGFMYNDE 630 (693)
Q Consensus 588 c~~c~~~f~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~~ 630 (693)
|..||+.|-.. +..|..|+.| |..|...
T Consensus 12 Cp~CG~kFYDL------------nk~PivCP~C---G~~~~~~ 39 (108)
T PF09538_consen 12 CPSCGAKFYDL------------NKDPIVCPKC---GTEFPPE 39 (108)
T ss_pred CCCCcchhccC------------CCCCccCCCC---CCccCcc
Confidence 77777777666 4567667775 5555444
No 119
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=38.47 E-value=21 Score=30.73 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=6.1
Q ss_pred CccccCcCccccc
Q psy2875 447 KVFHCPKCPKLFR 459 (693)
Q Consensus 447 ~~~~C~~C~k~f~ 459 (693)
.|-.||+||..|.
T Consensus 25 ~p~vcP~cg~~~~ 37 (129)
T TIGR02300 25 RPAVSPYTGEQFP 37 (129)
T ss_pred CCccCCCcCCccC
Confidence 3444555554443
No 120
>KOG2071|consensus
Probab=38.31 E-value=24 Score=38.71 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=20.8
Q ss_pred CCCceeccccCccccchhhHHHHHHhh
Q psy2875 473 ESEVHKCLYCFKVFVHKAHLDKHLILH 499 (693)
Q Consensus 473 ~~~~~~C~~C~k~f~~~~~L~~H~~~H 499 (693)
...|-+|..||.+|........||..|
T Consensus 415 ~~~pnqC~~CG~R~~~~ee~sk~md~H 441 (579)
T KOG2071|consen 415 KDSPNQCKSCGLRFDDSEERSKHMDIH 441 (579)
T ss_pred cCCcchhcccccccccchhhhhHhhhh
Confidence 345678888888888888877777666
No 121
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=37.40 E-value=28 Score=33.47 Aligned_cols=29 Identities=31% Similarity=0.723 Sum_probs=17.1
Q ss_pred CCcccccCCCCcccCChhhHHHHhhhcCC
Q psy2875 24 QERKFKCEMCPKSFDHKSNIRRHMAATHD 52 (693)
Q Consensus 24 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~ 52 (693)
.+-.|.|++|+|.|.-..-++.|+...|.
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred cCCEECCCCCCcccCChHHHHHHHhhcCH
Confidence 34457777777777777777777665553
No 122
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=36.73 E-value=15 Score=22.94 Aligned_cols=10 Identities=20% Similarity=1.056 Sum_probs=5.2
Q ss_pred Cceecccccc
Q psy2875 83 KIFTCAQCDK 92 (693)
Q Consensus 83 ~~~~C~~C~~ 92 (693)
..|.|+.|+.
T Consensus 18 ~~~vCp~C~~ 27 (30)
T PF08274_consen 18 ELLVCPECGH 27 (30)
T ss_dssp SSEEETTTTE
T ss_pred CEEeCCcccc
Confidence 3455555553
No 123
>KOG2071|consensus
Probab=36.46 E-value=25 Score=38.62 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=12.7
Q ss_pred CCcccCCccCcccCCch
Q psy2875 109 ENVKQCKICLEIFEDDE 125 (693)
Q Consensus 109 ~~~~~C~~C~~~f~~~~ 125 (693)
++...|.+|+..|....
T Consensus 511 e~~~~C~IC~EkFe~v~ 527 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVF 527 (579)
T ss_pred ccccCCcccccccceee
Confidence 45677999999886654
No 124
>PRK04023 DNA polymerase II large subunit; Validated
Probab=36.30 E-value=30 Score=40.63 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=4.0
Q ss_pred ccCCcCccc
Q psy2875 505 HNCDFCHLT 513 (693)
Q Consensus 505 ~~C~~C~~~ 513 (693)
+.|+.||..
T Consensus 664 y~CPKCG~E 672 (1121)
T PRK04023 664 DECEKCGRE 672 (1121)
T ss_pred CcCCCCCCC
Confidence 334444443
No 125
>PF15269 zf-C2H2_7: Zinc-finger
Probab=35.61 E-value=24 Score=23.96 Aligned_cols=22 Identities=36% Similarity=0.732 Sum_probs=17.5
Q ss_pred cccCcCcccccchhHHHHHHHh
Q psy2875 449 FHCPKCPKLFRHESHLQNHVIV 470 (693)
Q Consensus 449 ~~C~~C~k~f~~~~~L~~H~~~ 470 (693)
|+|-.|+.+...++.|-.||+-
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 6788888888888888888863
No 126
>PRK04023 DNA polymerase II large subunit; Validated
Probab=34.52 E-value=34 Score=40.13 Aligned_cols=7 Identities=29% Similarity=1.198 Sum_probs=2.9
Q ss_pred cCCCCcc
Q psy2875 422 KCTQCEE 428 (693)
Q Consensus 422 ~C~~C~k 428 (693)
.|+.|+.
T Consensus 665 ~CPKCG~ 671 (1121)
T PRK04023 665 ECEKCGR 671 (1121)
T ss_pred cCCCCCC
Confidence 3444443
No 127
>PF15269 zf-C2H2_7: Zinc-finger
Probab=34.07 E-value=26 Score=23.82 Aligned_cols=22 Identities=41% Similarity=0.812 Sum_probs=19.7
Q ss_pred ccccCCCCcccCChhhHHHHhh
Q psy2875 27 KFKCEMCPKSFDHKSNIRRHMA 48 (693)
Q Consensus 27 ~~~C~~C~k~f~~~~~L~~H~~ 48 (693)
.|+|-.|..+...++.|-.||.
T Consensus 20 ~ykcfqcpftc~~kshl~nhmk 41 (54)
T PF15269_consen 20 KYKCFQCPFTCNEKSHLFNHMK 41 (54)
T ss_pred cceeecCCcccchHHHHHHHHH
Confidence 4789999999999999999986
No 128
>PF12907 zf-met2: Zinc-binding
Probab=33.36 E-value=25 Score=23.71 Aligned_cols=29 Identities=28% Similarity=0.720 Sum_probs=17.0
Q ss_pred cccccccccc---CChHHHHhhhhccCCCCCc
Q psy2875 139 FKCPCCERIF---TSETRMRNHIDMKHADENL 167 (693)
Q Consensus 139 ~~C~~C~~~f---~~~~~L~~H~~~~H~~e~~ 167 (693)
+.|.+|-.+| .+...|..|....|+...+
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~~~ 33 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHPKNTF 33 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCCCCCH
Confidence 4566666333 4455677777666766443
No 129
>KOG2272|consensus
Probab=32.98 E-value=40 Score=32.52 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=8.5
Q ss_pred cccccccCcccCCc
Q psy2875 308 LQKCRYCQRMFRNE 321 (693)
Q Consensus 308 ~~~C~~C~~~f~~~ 321 (693)
-|.|..|.+.|-.-
T Consensus 221 HFvCa~CekPFlGH 234 (332)
T KOG2272|consen 221 HFVCAKCEKPFLGH 234 (332)
T ss_pred heeehhcCCcccch
Confidence 46676776666543
No 130
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=28.60 E-value=36 Score=24.08 Aligned_cols=18 Identities=17% Similarity=0.604 Sum_probs=10.7
Q ss_pred CcccccCCCCcccCChhh
Q psy2875 25 ERKFKCEMCPKSFDHKSN 42 (693)
Q Consensus 25 ~~~~~C~~C~k~f~~~~~ 42 (693)
++.+.|..||..|.....
T Consensus 2 Dk~l~C~dCg~~FvfTa~ 19 (49)
T PF13451_consen 2 DKTLTCKDCGAEFVFTAG 19 (49)
T ss_pred CeeEEcccCCCeEEEehh
Confidence 455666777666654444
No 131
>KOG1701|consensus
Probab=27.44 E-value=12 Score=38.96 Aligned_cols=40 Identities=3% Similarity=0.037 Sum_probs=17.7
Q ss_pred hhhhhhhhhcCchHHHHHhhhhcCCCCC--cCCCCCCCCceee
Q psy2875 588 SQQVEKNLNNMYNLLTTHIEYHHSQNNI--ESESNQSSGFMYN 628 (693)
Q Consensus 588 c~~c~~~f~~~~~~l~~h~~~h~~~~~~--~c~~c~~~~~~~~ 628 (693)
|..|++-..-. ..-..-+||-.-+|-| .|-.|++||...+
T Consensus 397 Cs~C~~PI~P~-~G~~etvRvvamdr~fHv~CY~CEDCg~~LS 438 (468)
T KOG1701|consen 397 CSVCGNPILPR-DGKDETVRVVAMDRDFHVNCYKCEDCGLLLS 438 (468)
T ss_pred hhhccCCccCC-CCCcceEEEEEccccccccceehhhcCcccc
Confidence 77777665444 2222233343444432 2333333465533
No 132
>PF14353 CpXC: CpXC protein
Probab=27.26 E-value=31 Score=30.15 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=16.6
Q ss_pred ceeeeeecCeeecCCccccccccc
Q psy2875 336 TLYKCLYCHKVFKKSTSFDKHMEH 359 (693)
Q Consensus 336 ~~~~C~~C~k~f~~~~~L~~H~~~ 359 (693)
..|.|+.||..|.-...+..|-..
T Consensus 37 ~~~~CP~Cg~~~~~~~p~lY~D~~ 60 (128)
T PF14353_consen 37 FSFTCPSCGHKFRLEYPLLYHDPE 60 (128)
T ss_pred CEEECCCCCCceecCCCEEEEcCC
Confidence 457788888877777666666543
No 133
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=26.70 E-value=61 Score=22.48 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=6.1
Q ss_pred CCceeccccCc
Q psy2875 474 SEVHKCLYCFK 484 (693)
Q Consensus 474 ~~~~~C~~C~k 484 (693)
...|+|..|++
T Consensus 35 ~~~~~C~~C~~ 45 (46)
T PF12760_consen 35 RGRYRCKACRK 45 (46)
T ss_pred CCeEECCCCCC
Confidence 34566666653
No 134
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=26.66 E-value=39 Score=23.72 Aligned_cols=9 Identities=33% Similarity=1.106 Sum_probs=3.7
Q ss_pred ccCCCCccC
Q psy2875 367 KCHLCTKAY 375 (693)
Q Consensus 367 ~C~~C~k~f 375 (693)
.|.+|+..+
T Consensus 3 ~C~~CgyvY 11 (47)
T PF00301_consen 3 QCPVCGYVY 11 (47)
T ss_dssp EETTTSBEE
T ss_pred CCCCCCEEE
Confidence 344444333
No 135
>KOG4167|consensus
Probab=26.01 E-value=17 Score=40.56 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=22.8
Q ss_pred cccccccccccCChhHHHHHHHhhc
Q psy2875 56 KYKCKLCARMYRYKWNLKAHLKMHK 80 (693)
Q Consensus 56 ~~~C~~C~~~f~~~~~L~~H~~~H~ 80 (693)
-|.|.+|++.|....++..||+.|.
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHHH
Confidence 4899999999999999999999985
No 136
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=25.59 E-value=47 Score=33.13 Aligned_cols=23 Identities=22% Similarity=0.561 Sum_probs=17.1
Q ss_pred CcccccccccccCChHhHHHHHh
Q psy2875 532 TKHTCDICGEKFINDLKLKAHIK 554 (693)
Q Consensus 532 ~~~~C~~C~~~f~~~~~L~~H~~ 554 (693)
..|+|+.|...|-.--+.-.|..
T Consensus 387 ~rY~Ce~CK~~FC~dCdvfiHe~ 409 (421)
T COG5151 387 GRYQCELCKSTFCSDCDVFIHET 409 (421)
T ss_pred cceechhhhhhhhhhhHHHHHHH
Confidence 34888888888877777777766
No 137
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=24.41 E-value=35 Score=20.12 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=8.2
Q ss_pred cccccCCCCc
Q psy2875 26 RKFKCEMCPK 35 (693)
Q Consensus 26 ~~~~C~~C~k 35 (693)
-+|.|+.||+
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 4799999985
No 138
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=24.26 E-value=24 Score=25.58 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=5.6
Q ss_pred cccCCCCcccC
Q psy2875 28 FKCEMCPKSFD 38 (693)
Q Consensus 28 ~~C~~C~k~f~ 38 (693)
|+|+.||..+.
T Consensus 3 ~~CP~CG~~ie 13 (54)
T TIGR01206 3 FECPDCGAEIE 13 (54)
T ss_pred cCCCCCCCEEe
Confidence 45555555443
No 139
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=23.79 E-value=42 Score=29.12 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=0.0
Q ss_pred cccchhhcCChHHHHHHhhhhcCCCC
Q psy2875 562 CIHCGDTLNNAKDYASHLLIIHNIES 587 (693)
Q Consensus 562 C~~C~~~f~~~~~l~~H~~~h~~~~~ 587 (693)
|-++|+.| .+|++|+.+|+|..|
T Consensus 79 cLEDGkkf---KSLKRHL~t~~gmTP 101 (148)
T COG4957 79 CLEDGKKF---KSLKRHLTTHYGLTP 101 (148)
T ss_pred EeccCcch---HHHHHHHhcccCCCH
No 140
>KOG2807|consensus
Probab=23.64 E-value=1.2e+02 Score=30.85 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=6.0
Q ss_pred ccccCccccccCChh
Q psy2875 393 SFRCKSCGRRFESEE 407 (693)
Q Consensus 393 ~~~C~~C~k~f~~~~ 407 (693)
|-.|++|+-...+..
T Consensus 290 P~eCpiC~ltLVss~ 304 (378)
T KOG2807|consen 290 PIECPICSLTLVSSP 304 (378)
T ss_pred CccCCccceeEecch
Confidence 333444444433333
No 141
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.45 E-value=50 Score=28.54 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=19.4
Q ss_pred hhhhhhhhhcCchHHHHHhhhhcCCCCCcCCCCCCCCceeecc
Q psy2875 588 SQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQSSGFMYNDE 630 (693)
Q Consensus 588 c~~c~~~f~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~~ 630 (693)
|..||+.|-.. +..|..|+.| |..|...
T Consensus 12 Cp~cg~kFYDL------------nk~p~vcP~c---g~~~~~~ 39 (129)
T TIGR02300 12 CPNTGSKFYDL------------NRRPAVSPYT---GEQFPPE 39 (129)
T ss_pred CCCcCcccccc------------CCCCccCCCc---CCccCcc
Confidence 77888877766 5577777776 6655444
No 142
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=23.22 E-value=40 Score=28.20 Aligned_cols=12 Identities=25% Similarity=0.514 Sum_probs=6.4
Q ss_pred cccCCccCCcCC
Q psy2875 248 PYMCNHCFLMFP 259 (693)
Q Consensus 248 ~~~C~~C~~~f~ 259 (693)
.+.|..|+..+.
T Consensus 16 ~~~C~~C~~~~~ 27 (104)
T TIGR01384 16 VYVCPSCGYEKE 27 (104)
T ss_pred eEECcCCCCccc
Confidence 455666665443
No 143
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=23.18 E-value=69 Score=21.69 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=16.0
Q ss_pred ccccccccccCC--hhHHHHHHHhhc
Q psy2875 57 YKCKLCARMYRY--KWNLKAHLKMHK 80 (693)
Q Consensus 57 ~~C~~C~~~f~~--~~~L~~H~~~H~ 80 (693)
-+|+.||..|.. ..+-..|.+-|.
T Consensus 14 ~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 14 TTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred cCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 468888877753 466667766663
No 144
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=23.00 E-value=51 Score=21.34 Aligned_cols=11 Identities=9% Similarity=0.148 Sum_probs=3.3
Q ss_pred hhhhhhhhhcC
Q psy2875 588 SQQVEKNLNNM 598 (693)
Q Consensus 588 c~~c~~~f~~~ 598 (693)
|..||+.|..+
T Consensus 6 C~eC~~~f~dS 16 (34)
T PF01286_consen 6 CDECGKPFMDS 16 (34)
T ss_dssp -TTT--EES-S
T ss_pred HhHhCCHHHHH
Confidence 44555554433
No 145
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=22.66 E-value=57 Score=29.59 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=11.3
Q ss_pred cccccccccccccccccc
Q psy2875 642 DSCDTYMDDTTENSNTYL 659 (693)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~ 659 (693)
+.|+.||..|.....+..
T Consensus 29 ~~c~~c~~~f~~~e~~~~ 46 (154)
T PRK00464 29 RECLACGKRFTTFERVEL 46 (154)
T ss_pred eeccccCCcceEeEeccC
Confidence 777777777765554443
No 146
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.59 E-value=49 Score=29.67 Aligned_cols=55 Identities=5% Similarity=-0.093 Sum_probs=33.4
Q ss_pred hhhhhhhhhcCchHHHHHhhhhcCCCCCcCCCCCCC--Cceeeccccccc-ccccCCcccccccccccccccccccc
Q psy2875 588 SQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQSS--GFMYNDETSSYS-HIKQEDDSCDTYMDDTTENSNTYLKQ 661 (693)
Q Consensus 588 c~~c~~~f~~~~~~l~~h~~~h~~~~~~~c~~c~~~--~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (693)
|++||+..... |+.|+.. |.-..+ +.+.- ..-+-|..|..||+.|.+-.......
T Consensus 31 C~kCG~~tI~~------------------Cp~C~~~IrG~y~v~-gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~aa 88 (158)
T PF10083_consen 31 CSKCGAKTITS------------------CPNCSTPIRGDYHVE-GVFGLGGHYEAPSYCHNCGKPYPWTENALEAA 88 (158)
T ss_pred HHHhhHHHHHH------------------CcCCCCCCCCceecC-CeeeeCCCCCCChhHHhCCCCCchHHHHHHHH
Confidence 99999888777 8887421 111110 11111 11268999999999999866544333
No 147
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=21.95 E-value=37 Score=32.64 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=12.6
Q ss_pred ceeccccCccccchhhHHHHHHhh
Q psy2875 476 VHKCLYCFKVFVHKAHLDKHLILH 499 (693)
Q Consensus 476 ~~~C~~C~k~f~~~~~L~~H~~~H 499 (693)
.|.|.+|+|.|......++|+..-
T Consensus 77 K~~C~lc~KlFkg~eFV~KHI~nK 100 (214)
T PF04959_consen 77 KWRCPLCGKLFKGPEFVRKHIFNK 100 (214)
T ss_dssp EEEE-SSS-EESSHHHHHHHHHHH
T ss_pred EECCCCCCcccCChHHHHHHHhhc
Confidence 455666666666666666665543
No 148
>KOG4377|consensus
Probab=21.86 E-value=42 Score=34.92 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=13.4
Q ss_pred cccccCChHhHHHHHhccCC
Q psy2875 539 CGEKFINDLKLKAHIKIIHN 558 (693)
Q Consensus 539 C~~~f~~~~~L~~H~~~~H~ 558 (693)
|+..|.+.+.+..|.+ .|.
T Consensus 409 c~~tl~s~sqm~shkr-khe 427 (480)
T KOG4377|consen 409 CEATLYSVSQMASHKR-KHE 427 (480)
T ss_pred CceEEEehhhhhhhhh-hhh
Confidence 7777777777777776 443
No 149
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=21.75 E-value=53 Score=28.91 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=12.2
Q ss_pred eeccccCccccchhhHHHHHHhhCCCC
Q psy2875 477 HKCLYCFKVFVHKAHLDKHLILHETSE 503 (693)
Q Consensus 477 ~~C~~C~k~f~~~~~L~~H~~~H~~~~ 503 (693)
..|-+||+.|.. |++|++.|+|-.
T Consensus 73 i~clecGk~~k~---LkrHL~~~~glt 96 (132)
T PF05443_consen 73 IICLECGKKFKT---LKRHLRTHHGLT 96 (132)
T ss_dssp EE-TBT--EESB---HHHHHHHTT-S-
T ss_pred eEEccCCcccch---HHHHHHHccCCC
Confidence 457777777654 367777776543
No 150
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=21.22 E-value=61 Score=26.62 Aligned_cols=27 Identities=33% Similarity=0.650 Sum_probs=16.4
Q ss_pred cccccccccccCChHhHHHHHhccCCCcccccchh
Q psy2875 533 KHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGD 567 (693)
Q Consensus 533 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~C~~C~~ 567 (693)
|++|..||..|..-+.+. . --|+.||-
T Consensus 2 pH~CtrCG~vf~~g~~~i---l-----~GCp~CG~ 28 (112)
T COG3364 2 PHQCTRCGEVFDDGSEEI---L-----SGCPKCGC 28 (112)
T ss_pred CceecccccccccccHHH---H-----ccCccccc
Confidence 567777777777643321 1 35777764
No 151
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=21.21 E-value=85 Score=38.14 Aligned_cols=10 Identities=40% Similarity=1.092 Sum_probs=5.7
Q ss_pred ccccCcCccc
Q psy2875 448 VFHCPKCPKL 457 (693)
Q Consensus 448 ~~~C~~C~k~ 457 (693)
+|.|+.||..
T Consensus 692 vy~CPsCGae 701 (1337)
T PRK14714 692 VYVCPDCGAE 701 (1337)
T ss_pred ceeCccCCCc
Confidence 4566666654
No 152
>KOG2593|consensus
Probab=20.93 E-value=72 Score=33.73 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=7.2
Q ss_pred CceeccccCccccchh
Q psy2875 475 EVHKCLYCFKVFVHKA 490 (693)
Q Consensus 475 ~~~~C~~C~k~f~~~~ 490 (693)
..|.|+.|++.|+...
T Consensus 127 ~~Y~Cp~C~kkyt~Le 142 (436)
T KOG2593|consen 127 AGYVCPNCQKKYTSLE 142 (436)
T ss_pred ccccCCccccchhhhH
Confidence 3444444444444433
No 153
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=20.91 E-value=27 Score=23.35 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=3.3
Q ss_pred eeeeecCe
Q psy2875 338 YKCLYCHK 345 (693)
Q Consensus 338 ~~C~~C~k 345 (693)
|.|..||.
T Consensus 29 y~C~~C~~ 36 (39)
T PF01096_consen 29 YVCCNCGH 36 (39)
T ss_dssp EEESSSTE
T ss_pred EEeCCCCC
Confidence 34444443
No 154
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.84 E-value=39 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.702 Sum_probs=15.2
Q ss_pred cccCCCCcccCChhhHHHHhhhcCCCCCc-cccccccccc
Q psy2875 28 FKCEMCPKSFDHKSNIRRHMAATHDLQKK-YKCKLCARMY 66 (693)
Q Consensus 28 ~~C~~C~k~f~~~~~L~~H~~~~H~~~k~-~~C~~C~~~f 66 (693)
|+|.+||..|. +.++|. +.| -.|+.||..+
T Consensus 13 Y~c~~cg~~~d----vvq~~~-----ddplt~ce~c~a~~ 43 (82)
T COG2331 13 YECTECGNRFD----VVQAMT-----DDPLTTCEECGARL 43 (82)
T ss_pred EeecccchHHH----HHHhcc-----cCccccChhhChHH
Confidence 66666665443 444443 223 3466666543
No 155
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=20.65 E-value=42 Score=27.17 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=6.7
Q ss_pred CceeccccccccC
Q psy2875 83 KIFTCAQCDKAFS 95 (693)
Q Consensus 83 ~~~~C~~C~~~F~ 95 (693)
.++.|..|++.|.
T Consensus 53 GIW~C~~C~~~~A 65 (90)
T PTZ00255 53 GIWRCKGCKKTVA 65 (90)
T ss_pred EEEEcCCCCCEEe
Confidence 3455555555543
No 156
>KOG4167|consensus
Probab=20.53 E-value=31 Score=38.63 Aligned_cols=26 Identities=23% Similarity=0.575 Sum_probs=23.3
Q ss_pred CcccccchhhcCChHHHHHHhhhhcC
Q psy2875 559 LFTCIHCGDTLNNAKDYASHLLIIHN 584 (693)
Q Consensus 559 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 584 (693)
.|.|.+||+.|....+++.||+.|--
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHHHH
Confidence 48999999999999999999999853
No 157
>KOG2593|consensus
Probab=20.32 E-value=1.2e+02 Score=32.19 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=21.6
Q ss_pred ccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccC
Q psy2875 443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCF 483 (693)
Q Consensus 443 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~ 483 (693)
-+...-|.||.|.+.|.....|+. +--..-.|.|..|+
T Consensus 123 ~t~~~~Y~Cp~C~kkyt~Lea~~L---~~~~~~~F~C~~C~ 160 (436)
T KOG2593|consen 123 DTNVAGYVCPNCQKKYTSLEALQL---LDNETGEFHCENCG 160 (436)
T ss_pred ccccccccCCccccchhhhHHHHh---hcccCceEEEecCC
Confidence 344556777777777766544432 22223457777775
No 158
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=20.31 E-value=72 Score=23.12 Aligned_cols=10 Identities=30% Similarity=1.231 Sum_probs=6.0
Q ss_pred cccccccccC
Q psy2875 58 KCKLCARMYR 67 (693)
Q Consensus 58 ~C~~C~~~f~ 67 (693)
+|+.||+.|.
T Consensus 7 ~C~~Cg~~~~ 16 (54)
T PF14446_consen 7 KCPVCGKKFK 16 (54)
T ss_pred cChhhCCccc
Confidence 4666666654
No 159
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=20.25 E-value=66 Score=22.91 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=5.1
Q ss_pred ccccccCcccc
Q psy2875 223 YVCNYCYDSFE 233 (693)
Q Consensus 223 ~~C~~C~~~f~ 233 (693)
|+|..||..+.
T Consensus 2 y~C~~CgyiYd 12 (50)
T cd00730 2 YECRICGYIYD 12 (50)
T ss_pred cCCCCCCeEEC
Confidence 34445544443
No 160
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=20.06 E-value=56 Score=28.46 Aligned_cols=10 Identities=30% Similarity=1.158 Sum_probs=4.2
Q ss_pred cccccccccC
Q psy2875 58 KCKLCARMYR 67 (693)
Q Consensus 58 ~C~~C~~~f~ 67 (693)
+|..||+.|.
T Consensus 3 ~Ct~Cg~~f~ 12 (131)
T PF09845_consen 3 QCTKCGRVFE 12 (131)
T ss_pred ccCcCCCCcC
Confidence 3444444443
Done!