RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2875
(693 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 89.4 bits (223), Expect = 9e-21
Identities = 57/184 (30%), Positives = 79/184 (42%), Gaps = 4/184 (2%)
Query: 318 FRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPS 377
A EK Y C C K F +S +H H +KC C K++
Sbjct: 3 EFGSSSSVAQAALEPGEKP-YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 378 EKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKH 435
+K+L RH TH + ++C CG+ F L HQ H E K + C +C +SF H
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE-KPYACPECGKSFSQLAH 120
Query: 436 LKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH 495
L+ H H K + CP+C K F E +L H H + +KC C K F + L+ H
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Query: 496 LILH 499
H
Sbjct: 181 QRTH 184
Score = 85.6 bits (213), Expect = 2e-19
Identities = 53/163 (32%), Positives = 70/163 (42%), Gaps = 2/163 (1%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCH 369
C C + F D L H+ +HT EK YKC C K F +H H +KC
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEK-PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 370 LCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEE 428
C K++ NL H TH + + C CG+ F L HQ H K +KC +C +
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 429 SFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
SF + +L H H K + CP+C K F L H H
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 85.2 bits (212), Expect = 3e-19
Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 5/184 (2%)
Query: 347 FKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESE 406
S+S + C C K++ +L H TH + ++C CG+ F +
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 407 ELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHL 464
+ L HQ H E K +KC +C +SF + +L+ H H K + CP+C K F +HL
Sbjct: 63 KDLTRHQRTHTGE-KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 465 QNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRH 523
+ H H + +KC C K F + +L H H T E + C C +F+ + L H
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH-TGEKPYKCPECGKSFSRRDALNVH 180
Query: 524 MRSH 527
R+H
Sbjct: 181 QRTH 184
Score = 79.0 bits (196), Expect = 5e-17
Identities = 59/209 (28%), Positives = 80/209 (38%), Gaps = 33/209 (15%)
Query: 36 SFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFS 95
S S+ A +K Y C C + + +L H + H G K + C +C K+FS
Sbjct: 2 SEFGSSSSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
Query: 96 LKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRM 154
K +L++H R H E +C C + F L H +R
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH--------------QRT------- 99
Query: 155 RNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQH 212
H E + C +C K FS H R H K Y+C EC K F+ ED + H
Sbjct: 100 -------HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Query: 213 FRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
R H E Y C C SF + L H
Sbjct: 153 QR-THTGEKPYKCPECGKSFSRRDALNVH 180
Score = 75.9 bits (188), Expect = 5e-16
Identities = 60/195 (30%), Positives = 84/195 (43%), Gaps = 36/195 (18%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
E+ + C C KSF ++ H TH +K YKC C + + K +L H + H G K
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 85 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPC 143
+ C +C K+FS ++NL H R H E + + CP
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGE---------------------------KPYACPE 110
Query: 144 CERIFTSETRMRNH--IDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSEC 199
C + F+ +R H H E +KC +C K FS E H H R H K Y+C EC
Sbjct: 111 CGKSFSQLAHLRAHQRT---HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Query: 200 EKRFATEDIMRQHFR 214
K F+ D + H R
Sbjct: 168 GKSFSRRDALNVHQR 182
Score = 68.2 bits (168), Expect = 2e-13
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 16/167 (9%)
Query: 409 LIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQN 466
+ + E K + C +C +SF HL +H H K + CP+C K F + L
Sbjct: 9 SVAQAALEPGE-KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTR 67
Query: 467 HVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMR 525
H H + +KC C K F +A+L H H T E + C C +F+ L H R
Sbjct: 68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-TGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 526 SHEEYHTK---HTCDICGEKFINDLKLKAHIKIIHNL---FTCIHCG 566
+ HT + C CG+ F + L H + H + C CG
Sbjct: 127 T----HTGEKPYKCPECGKSFSREDNLHTH-QRTHTGEKPYKCPECG 168
Score = 64.8 bits (159), Expect = 3e-12
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 30/167 (17%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
E+ +KC C KSF K ++ RH TH +K YKC C + + + NL+AH + H G K
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQ-RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP 105
Query: 85 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPC 143
+ C +C K+FS ++L H R H E +C C + F ++ L H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH------------- 152
Query: 144 CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 190
+R H E +KC +C K FS ++H R H
Sbjct: 153 -QRT--------------HTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 60.5 bits (148), Expect = 9e-11
Identities = 59/199 (29%), Positives = 77/199 (38%), Gaps = 38/199 (19%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 219
E + C +C K FS H R H K Y+C EC K F+ + + +H R H
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTG 74
Query: 220 EDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNHECTSCFTCPF 277
E Y C C SF ++ L H H G PY C C F +LR H
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH---------- 124
Query: 278 CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTL 337
QR + EK + C C + F ED L H+ +HT EK
Sbjct: 125 -QRTHTGEKPYK---------------------CPECGKSFSREDNLHTHQRTHTGEKP- 161
Query: 338 YKCLYCHKVFKKSTSFDKH 356
YKC C K F + + + H
Sbjct: 162 YKCPECGKSFSRRDALNVH 180
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 68.6 bits (169), Expect = 1e-14
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
KCE+C K F K ++ HM H K YKCK C +L HL++H +
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 85 FTCAQCDKAFSLKSNLSKHVRHH 107
F C C A S L+ H+R H
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSH 87
Score = 56.3 bits (137), Expect = 4e-10
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHE 444
+ +C+ CG+ F ++ L H H K +KC C+ + + L +HL H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV-KPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 445 KVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ F C CP R+ S L H+ H
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 52.4 bits (127), Expect = 8e-09
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM- 108
+ +KC++C + + K LK H++ H G K + C CD A + S+L+KH+R H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 109 ENVKQCKICLEIFEDDEVLEEHVKSH 134
E +C+IC + L H++SH
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 51.3 bits (124), Expect = 2e-08
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 330 SHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHN 389
S +KC C K F + HM H +KC C A +L++HL H+
Sbjct: 2 SSGSSGP-HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 390 VRRSFRCKSCGRRFESEELLIVHQVIH 416
R F+C+ C + L VH H
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 45.1 bits (108), Expect = 3e-06
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 219
KC+ C K FS + K H R H K Y+C C+ A + +H R H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSD 61
Query: 220 EDAYVCNYCYDSFETKSTLVDH 241
E + C C + S L H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVH 83
Score = 44.0 bits (105), Expect = 7e-06
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
+ +KC+ C + S++ +H+ H ++ +KC++C R L HL+ H G
Sbjct: 34 VKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92
Query: 85 FTCA 88
+
Sbjct: 93 PSSG 96
Score = 37.8 bits (89), Expect = 0.001
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMC 251
++C C K F+ +D ++ H R H Y C C + S+L H H P+ C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 252 NHCFLMFPDEKNLRNH 267
C + L H
Sbjct: 68 QICPYASRNSSQLTVH 83
Score = 34.7 bits (81), Expect = 0.014
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
KC+ C + L H H+ E+ +KC C + S+ H+ H
Sbjct: 38 KCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLRSH 87
Score = 34.3 bits (80), Expect = 0.020
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSHEEYHTK-- 533
HKC C K F K L H+ H T + C C + L +H+R H+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKHLRI----HSDER 63
Query: 534 -HTCDICGEKFINDLKLKAHIKI 555
C IC N +L H++
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRS 86
Score = 29.3 bits (67), Expect = 1.0
Identities = 29/126 (23%), Positives = 36/126 (28%), Gaps = 35/126 (27%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNHECTSCFT 274
+ C C F K L H H G PY C C D +L H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH------- 55
Query: 275 CPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTME 334
R + E+ P KC+ C RN +LT H SHT +
Sbjct: 56 ----LRIHSDER-------------P--------FKCQICPYASRNSSQLTVHLRSHTGD 90
Query: 335 KTLYKC 340
Sbjct: 91 SG-PSS 95
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 65.6 bits (161), Expect = 2e-13
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
ER + C E C + F ++ RH+ H QK ++C++C R + +L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHH 107
K F C C + F+ +H + H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 51.3 bits (124), Expect = 2e-08
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 394 FRCKS--CGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVF 449
+ C C RRF L H IH + K +C C +F HL H+ H K F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 450 HCPKCPKLFRHESHLQNHVIVH 471
C C + F + H +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 42.5 bits (101), Expect = 2e-05
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 447 KVFHCPK--CPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ + CP C + F L H+ +H + +C C + F HL H+ H T E
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGEK 61
Query: 505 -HNCDFCHLTFTTDNDLIRHMRSH 527
CD C F ++ RH + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 41.3 bits (98), Expect = 6e-05
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
++ F+C +C ++F ++ H+ TH +K + C +C R + K H K+H K
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 39.0 bits (92), Expect = 3e-04
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTK 373
C R F LT H HT +K ++C C + F +S H+ H C +C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 374 AYPSEKNLDRHLLTH 388
+ RH H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 37.8 bits (89), Expect = 9e-04
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 139 FKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFY 194
+ CP C+R F+ + HI H + F+C+ C++ FS H R H K +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 195 RCSECEKRFATEDIMRQHFR 214
C C ++FA D ++H +
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 37.4 bits (88), Expect = 0.001
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+CR C R F D LT H +HT EK + C C + F +S +H + H
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTKIH 85
Score = 37.1 bits (87), Expect = 0.002
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 168 FKC--KKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAY 223
+ C + C + FS H R H K ++C C + F+ D + H R H E +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 224 VCNYCYDSFETKSTLVDH 241
C+ C F H
Sbjct: 64 ACDICGRKFARSDERKRH 81
Score = 34.4 bits (80), Expect = 0.015
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 477 HKCLY--CFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSHEEYHTK 533
+ C C + F L +H+ +H T + C C F+ + L H+R+H T
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTH----TG 59
Query: 534 ---HTCDICGEKFINDLKLKAHIKI 555
CDICG KF + K H KI
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKI 84
Score = 33.6 bits (78), Expect = 0.025
Identities = 25/138 (18%), Positives = 39/138 (28%), Gaps = 57/138 (41%)
Query: 55 KKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK 112
+ Y C + C R + +L H+++H G K F C C + FS +L
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHL------------ 50
Query: 113 QCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKK 172
+H R H E F C
Sbjct: 51 -------------------TTHI----------RT--------------HTGEKPFACDI 67
Query: 173 CLKVFSDEIKFHLHGRAH 190
C + F+ + H + H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 66.4 bits (163), Expect = 2e-13
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHM--AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
E+ F+C C K + K N+ H + ++ + C +C +R + L+ H+ H G
Sbjct: 33 EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE 92
Query: 83 KIFTCAQCDKAFSLKSNLSKH 103
+ C+ C + F K +L H
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSH 113
Score = 65.2 bits (160), Expect = 5e-13
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAH---LKMHKG 81
+C C K F K ++ H H +K ++C C + Y K NL H M++
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 82 PKIFTCAQCDKAFSLKSNLSKHVRHH 107
++FTC+ C + F + L H+ H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 64.4 bits (158), Expect = 1e-12
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 394 FRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQH---LLAHEKVKV 448
C +C ++F S+ L VH H E K +C +C + + K++L +H + +V
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGE-KPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 449 FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH 495
F C C + FR L+ H++ H +KC C + F+ K L H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 63.3 bits (155), Expect = 2e-12
Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRH---LLT 387
+ +C CHK F H H +C C K Y ++NL H
Sbjct: 2 SSGSSG-VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 388 HNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQH 439
+ + F C C F L +H V H E +KC+ C + F KK L+ H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGE-MPYKCSSCSQQFMQKKDLQSH 113
Score = 54.8 bits (133), Expect = 3e-09
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM----EN 110
+C C + + K+ LK H + H G K F C +C K + K NL +H + E
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 111 VKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNH 157
V C +C E F L H+ SH +KC C + F + +++H
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 52.9 bits (128), Expect = 1e-08
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 32/139 (23%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNR 137
G C C K F K L H R H E +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGE---------------------------K 34
Query: 138 RFKCPCCERIFTSETRMRNH--IDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KF 193
F+CP C + + + + H + + E +F C C + F ++ LH +H
Sbjct: 35 PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP 94
Query: 194 YRCSECEKRFATEDIMRQH 212
Y+CS C ++F + ++ H
Sbjct: 95 YKCSSCSQQFMQKKDLQSH 113
Score = 49.0 bits (118), Expect = 3e-07
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 139 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA-----KF 193
+CP C + F S+ ++ H + KH E F+C KC K + + H + +
Sbjct: 8 VECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
+ CS C++ F +R H + H E Y C+ C F K L H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 47.9 bits (115), Expect = 6e-07
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 16/125 (12%)
Query: 442 AHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHET 501
CP C K F + +L+ H H + +C C K + K +L +H
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH---EAR 57
Query: 502 SEMH------NCDFCHLTFTTDNDLIRHMRSHEEYHTK---HTCDICGEKFINDLKLKAH 552
+ M+ C C TF +L HM S HT + C C ++F+ L++H
Sbjct: 58 NCMNRSEQVFTCSVCQETFRRRMELRLHMVS----HTGEMPYKCSSCSQQFMQKKDLQSH 113
Query: 553 IKIIH 557
+ +H
Sbjct: 114 MIKLH 118
Score = 43.6 bits (104), Expect = 2e-05
Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 38/146 (26%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNHECTSCFT 274
+ C C+ F +K L H H G P+ C C + ++NL H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH------- 54
Query: 275 CPFCQRKYKI---EKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSH 331
+ + + E+ C CQ FR +L H +SH
Sbjct: 55 ----EARNCMNRSEQVFT---------------------CSVCQETFRRRMELRLHMVSH 89
Query: 332 TMEKTLYKCLYCHKVFKKSTSFDKHM 357
T E YKC C + F + HM
Sbjct: 90 TGEMP-YKCSSCSQQFMQKKDLQSHM 114
Score = 41.3 bits (98), Expect = 1e-04
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 192 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH----FFHHG- 246
C C K+F ++ ++ H R H E + C C + K L++H +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 247 NPYMCNHCFLMFPDEKNLRNH----------ECTSC 272
+ C+ C F LR H +C+SC
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 64.0 bits (157), Expect = 1e-12
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
+++F C+ C + F N+ H TH ++ Y C +C + +R + +L+ H +H K
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 85 FTCAQCDKAFSLKSNLSKHVRHHM 108
F C +C K F L+ H HM
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHM 97
Score = 59.0 bits (144), Expect = 4e-11
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 380 NLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLK 437
L ++ F CK CGR F L++H+ H E + + C C ++F+ + HL+
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE-RPYTCDICHKAFRRQDHLR 62
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
H H K K F C +C K F L H +H
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 52.8 bits (128), Expect = 8e-09
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 324 LTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDR 383
+ L +K + C +C + F KS + H H + C +C KA+ + +L
Sbjct: 5 SSGGRLPSKTKK-EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCT 424
H H+ + F+C+ CG+ F L VH+ +H +
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 50.9 bits (123), Expect = 4e-08
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 40 KSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSN 99
S +K++ CK C R + +NL H + H + +TC C KAF + +
Sbjct: 2 SSGSSGGRL-PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH 60
Query: 100 LSKHVRHH 107
L H H
Sbjct: 61 LRDHRYIH 68
Score = 45.9 bits (110), Expect = 2e-06
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 219
+ F CK C + F+ +H R H + Y C C K F +D +R H H+K
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSK 70
Query: 220 EDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 252
E + C C F TL H H +
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 45.1 bits (108), Expect = 4e-06
Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 435 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 494
L + K F C C + F +L H H + + C C K F + HL
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 495 HLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSH 527
H +H + E C C F L H H
Sbjct: 64 HRYIH-SKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 42.4 bits (101), Expect = 3e-05
Identities = 27/158 (17%), Positives = 38/158 (24%), Gaps = 58/158 (36%)
Query: 71 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 130
K K F C C + F+ NL
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLI---------------------------- 35
Query: 131 VKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 190
H+ R H DE + C C K F + H H
Sbjct: 36 ---HE----------RT--------------HTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 191 A--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
+ K ++C EC K F + H H + +
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTAA 105
Score = 40.9 bits (97), Expect = 1e-04
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
ER + C++C K+F + ++R H H +K +KC+ C + + L H +H
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101
Query: 85 FTC 87
T
Sbjct: 102 PTA 104
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 62.4 bits (153), Expect = 2e-12
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 28 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
F C++C KSF S + H+ H + Y C+ C + + K ++K H +H G K C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 88 AQCDKAFSLKSNLSKHVRHH 107
C KAFS SNL H R H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 52.8 bits (128), Expect = 4e-09
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 393 SFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFH 450
SF CK CG+ F+ L H +IH R + C C + F K +K+H H K
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPY-PCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 451 CPKCPKLFRHESHLQNHVIVH 471
C C K F S+L H H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
Score = 44.3 bits (106), Expect = 4e-06
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 449 FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM-HNC 507
F C C K F+ S L H+++H ++ + C YC K F K+ + KH +H T E H C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH-TGEKPHKC 60
Query: 508 DFCHLTFTTDNDLIRHMRSH 527
C F+ ++LI H R H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 40.9 bits (97), Expect = 6e-05
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 168 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 225
F CK C K F H H+ + Y C C KRF + M++H H E + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60
Query: 226 NYCYDSFETKSTLVDH 241
C +F S L+ H
Sbjct: 61 QVCGKAFSQSSNLITH 76
Score = 40.5 bits (96), Expect = 1e-04
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCH 369
C+ C + F+ L+ H L H+ + Y C YC K F + + KH H HKC
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 370 LCTKAYPSEKNLDRHLLTH 388
+C KA+ NL H H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 35.1 bits (82), Expect = 0.007
Identities = 27/134 (20%), Positives = 38/134 (28%), Gaps = 55/134 (41%)
Query: 57 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKI 116
+ CK+C + ++ L HL +H + + C C K F KS++ K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKK-------------- 47
Query: 117 CLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKV 176
H I H E KC+ C K
Sbjct: 48 -----------------HT----------FI--------------HTGEKPHKCQVCGKA 66
Query: 177 FSDEIKFHLHGRAH 190
FS H R H
Sbjct: 67 FSQSSNLITHSRKH 80
Score = 34.7 bits (81), Expect = 0.009
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMC 251
+ C C K F + H H+ Y C YC F KS + H F H G P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 252 NHCFLMFPDEKNLRNH 267
C F NL H
Sbjct: 61 QVCGKAFSQSSNLITH 76
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 65.7 bits (161), Expect = 2e-12
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 14/172 (8%)
Query: 371 CTKAYPSEKNLDRHLLTHNVRRSFRCK--SCGRRFESEELLIVHQVIH--ERKFHKCTQ- 425
C AY L HL H + F CK C + F S L H + H E K C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE-KNFTCDSD 78
Query: 426 -CEESFKNKKHLKQHLLAH--EKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEVHKC- 479
C+ F K ++K+H K+ V+ C C K F+ + L+ H H + ++C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 480 -LYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM-RSHEE 529
C K F + L +H +H D C T ++H+ H++
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 64.5 bits (158), Expect = 4e-12
Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 14/183 (7%)
Query: 326 AHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCH--LCTKAYPSEKNL 381
+ + K Y C + C + K+ H+ H C C K + S +L
Sbjct: 2 GEKALPVVYKR-YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 382 DRHLLTHNVRRSFRCK--SCGRRFESEELLIVHQVIH--ERKF-HKCT--QCEESFKNKK 434
RH LTH ++F C C RF ++ + H + + C C ++FK
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN 120
Query: 435 HLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHL 492
LK H +H + + C C K F S L+ H VH K C V
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180
Query: 493 DKH 495
KH
Sbjct: 181 LKH 183
Score = 59.9 bits (146), Expect = 1e-10
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 40/207 (19%)
Query: 25 ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHK 80
+++ C C +++ ++ H+ H +K + CK C + + +L H H
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 81 GPKIFTCAQ--CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNR 137
G K FTC CD F+ K+N+ KH H +
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV------------------------ 104
Query: 138 RFKCPC--CERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAH--A 191
+ C C + F +++ H H + ++C C K FS + H + H
Sbjct: 105 -YVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162
Query: 192 KFYRCSECEKRFATEDIMRQHFRNYHN 218
+ C T + +H H
Sbjct: 163 PCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 56.8 bits (138), Expect = 2e-09
Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 13/172 (7%)
Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKC--LYCHKVFKKSTSFDKHMEHHNRNVLHKC--H 369
C + KL AH HT EK + C C K F +H H C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 370 LCTKAYPSEKNLDRHLLTH--NVRRSFRC--KSCGRRFESEELLIVHQVIH-ERKFHKCT 424
C + ++ N+ +H + C ++CG+ F+ L VHQ H ++ ++C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 425 Q--CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHV-IVHDE 473
C++ F LK+H H C + + + HV H +
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 47.2 bits (113), Expect = 4e-06
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 16/183 (8%)
Query: 74 AHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHM-ENVKQCK--ICLEIFEDDEVLE 128
+ K + C A C A++ L H+ H E CK C + F L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 129 EHVKSHQNRR-FKC--PCCERIFTSETRMRNHIDMKHADENL-FKC--KKCLKVFSDEIK 182
H +H + F C C+ FT++ M+ H + H + + C + C K F +
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 183 FHLHGRAHA--KFYRCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTL 238
+H +H Y C C+KRF+ +++H + H + C +T +
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKTWTLY 180
Query: 239 VDH 241
+ H
Sbjct: 181 LKH 183
Score = 39.5 bits (93), Expect = 0.001
Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 23/164 (14%)
Query: 137 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAHA- 191
+R+ C C + +++ H+ KH E F CK C K F+ H H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69
Query: 192 -KFYRCSE--CEKRFATEDIMRQHFRNYH-NKEDAYVCNY--CYDSFETKSTLVDHFFHH 245
K + C C+ RF T+ M++HF +H K YVC++ C +F+ + L H F H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 246 GN--PYMCNH--CFLMFPDEKNLRNHE-------CTSCFTCPFC 278
PY C H C F L+ HE C +C F
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV 173
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 62.1 bits (152), Expect = 3e-12
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG--P 82
CE+C K F ++ RH +H +K Y C +C ++ K + H++ H G
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 83 KIFTCAQCDKAFSLKSNLSKHVR 105
K + C C K FS +L+ H++
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIK 86
Score = 54.8 bits (133), Expect = 1e-09
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 419 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEV-- 476
C C + F++ HL +H L+H K + CP C F+ + + HV HD S
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 477 HKCLYCFKVFVHKAHLDKHL 496
+ C C K F HL+ H+
Sbjct: 66 YICQSCGKGFSRPDHLNGHI 85
Score = 51.7 bits (125), Expect = 1e-08
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH---ERKFHK 422
C +C K + +L+RH L+H+ + + C CG RF+ ++ + H H K +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 423 CTQCEESFKNKKHLKQHL 440
C C + F HL H+
Sbjct: 68 CQSCGKGFSRPDHLNGHI 85
Score = 51.0 bits (123), Expect = 2e-08
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVK- 112
C++C +++R ++L H H G K ++C C F K +S HVR H K
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 113 -QCKICLEIFEDDEVLEEHVK 132
C+ C + F + L H+K
Sbjct: 66 YICQSCGKGFSRPDHLNGHIK 86
Score = 43.6 bits (104), Expect = 8e-06
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSHE-EYHTKH 534
C C K+F HL++H + H + E ++C C L F + + H+RSH+ +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 535 TCDICGEKFINDLKLKAHIKIIH 557
C CG+ F L HIK +H
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 43.6 bits (104), Expect = 1e-05
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 442 AHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH-- 499
C C K+FR HL H + H + + C C F K + H+ H
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 500 ETSEMHNCDFCHLTFTTDNDLIRHMR 525
+ + C C F+ + L H++
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 42.5 bits (101), Expect = 3e-05
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 219
+ + C+ C K+F D + H +H+ K Y C C RF +D M H R+ H+
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDG 60
Query: 220 EDA--YVCNYCYDSFETKSTLVDH 241
Y+C C F L H
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGH 84
Score = 40.9 bits (97), Expect = 9e-05
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSH--- 134
G C C K F +L++H H E C +C F+ + + HV+SH
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 135 QNRRFKCPCCERIFTSETRMRNHIDMKH 162
+ + C C + F+ + HI H
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 39.8 bits (94), Expect = 2e-04
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVL--HK 367
C C ++FR+ L H+LSH+ EK Y C C FK+ H+ H+ +V +
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 368 CHLCTKAYPSEKNLDRHL 385
C C K + +L+ H+
Sbjct: 68 CQSCGKGFSRPDHLNGHI 85
Score = 39.0 bits (92), Expect = 4e-04
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 139 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH----AKFY 194
C C +IF + H + H+ E + C C F + + H R+H K Y
Sbjct: 8 VACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 195 RCSECEKRFATEDIMRQHFRNYH 217
C C K F+ D + H + H
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 37.9 bits (89), Expect = 0.001
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHD--LQKKYKCKLCARMYRYKWNLKAHLKM-HKG 81
E+ + C +C F K + H+ +HD + K Y C+ C + + +L H+K H G
Sbjct: 33 EKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Query: 82 PK 83
P
Sbjct: 92 PS 93
Score = 27.8 bits (63), Expect = 3.4
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNH------E 268
+ C C F L H H G PY C C L F + + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 269 CTSCFTCPFCQRKYKIEKHLEKHI 292
+ C C + + HL HI
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHI 85
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 62.5 bits (153), Expect = 4e-12
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 23 IQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHK 80
++ R C C K F S +R+H+ TH + + C C + + LK H +H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHL-HTHG-PRVHVCAECGKAFVESSKLKRHQLVHT 58
Query: 81 GPKIFTCA--QCDKAFSLKSNLSKHVRHH 107
G K F C C K FSL NL HVR H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 60.6 bits (148), Expect = 2e-11
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 396 CKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK-- 453
K C + F + H H + H C +C ++F LK+H L H K F C
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 454 CPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILH 499
C K F + +L+ HV +H + C + C K F +L H++ H
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 60.6 bits (148), Expect = 2e-11
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGP 82
R C C K+F S ++RH H +K ++C C + + +NL+ H+++H G
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Query: 83 KIFTCA--QCDKAFSLKSNLSKHVRHH 107
+ + C C+K F+ +NL H+ H
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 42.9 bits (102), Expect = 4e-05
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHL--C 371
C +MFR+ + H +H + ++ C C K F +S+ +H H +C C
Sbjct: 13 CTKMFRDNSAMRKHLHTHG-PR-VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 372 TKAYPSEKNLDRHLLTHNVRRSFRCKS--CGRRFESEELLIVHQVIH 416
K + + NL H+ H R + C C ++F L H + H
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 34.8 bits (81), Expect = 0.019
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 164 DENLFKC--KKCLKVFSDEIKFHLHGRAHA-KFYRCSECEKRFATEDIMRQHFRNYHNKE 220
+ C K C K+F D H H + + C+EC K F +++H H E
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLV-HTGE 60
Query: 221 DAYVCNY--CYDSFETKSTLVDH 241
+ C + C F L H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTH 83
Score = 32.5 bits (75), Expect = 0.15
Identities = 29/116 (25%), Positives = 40/116 (34%), Gaps = 40/116 (34%)
Query: 447 KVFHCPK--CPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
+ CP C K+FR S ++ H+ H VH C C K FV + L
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKL------------ 50
Query: 505 HNCDFCHLTFTTDNDLIRHMRSHEEYHT---KHTCDI--CGEKFINDLKLKAHIKI 555
RH HT C CG++F D L+ H++I
Sbjct: 51 ----------------KRHQLV----HTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 60.2 bits (147), Expect = 1e-11
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 28 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
F+C +C ++F ++ H+ TH +K + C +C R + K H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILE 61
Query: 88 AQCDKAFSLKSNLSKHVRHH 107
+ ++ S +L V
Sbjct: 62 DKVEELLSKNYHLENEVARL 81
Score = 52.5 bits (127), Expect = 7e-09
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQC 114
K ++C++C R + +L H++ H G K F C C + F+ +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 115 KICLEIFEDDEVLEEHVK 132
E+ + LE V
Sbjct: 62 DKVEELLSKNYHLENEVA 79
Score = 50.2 bits (121), Expect = 3e-08
Identities = 18/74 (24%), Positives = 30/74 (40%)
Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQ 425
+C +C + + +L H+ TH + F C CGR+F + H+ I +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 426 CEESFKNKKHLKQH 439
EE HL+
Sbjct: 64 VEELLSKNYHLENE 77
Score = 40.6 bits (96), Expect = 1e-04
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 168 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 225
F+C+ C++ FS H R H K + C C ++FA D ++H H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILPILE 61
Query: 226 NYCYDSFETKSTLVDHFFHH 245
+ + L +
Sbjct: 62 DKVEELLSKNYHLENEVARL 81
Score = 40.6 bits (96), Expect = 1e-04
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 9/97 (9%)
Query: 446 VKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMH 505
+K F C C + F HL H+ H + C C + F +H +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPI 59
Query: 506 NCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEK 542
D + + L + + GE+
Sbjct: 60 LEDKVEELLSKNYHLENEVA-RLKKLV-------GER 88
Score = 39.4 bits (93), Expect = 3e-04
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSHEEYHTKHT 535
+C C + F HL H+ H T E CD C F ++ RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERKRHRDIQHI--LPIL 60
Query: 536 CDICGEKFINDLKLKAHIK 554
D E + L+ +
Sbjct: 61 EDKVEELLSKNYHLENEVA 79
Score = 38.6 bits (91), Expect = 4e-04
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGNPYMCN 252
++C C + F+ D + H R H E + C+ C F H H P + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHILPILED 62
Query: 253 HCFLMFPDEKNLRNH 267
+ +L N
Sbjct: 63 KVEELLSKNYHLENE 77
Score = 37.5 bits (88), Expect = 0.001
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCH 369
+CR C R F D LT H +HT EK + C C + F +S +H + +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQHIL-PILED 62
Query: 370 LCTKAYPSEKNLDRH 384
+ +L+
Sbjct: 63 KVEELLSKNYHLENE 77
Score = 32.5 bits (75), Expect = 0.076
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 2/51 (3%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
C C R F D+ H ++ K+ + +
Sbjct: 33 ACDICGRKFARSDERKRHRDIQH-ILP-ILEDKVEELLSKNYHLENEVARL 81
Score = 28.2 bits (64), Expect = 2.4
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 507 CDFCHLTFTTDNDLIRHMRSHEEYHT--K-HTCDICGEKFINDLKLKAHIKIIHNL--FT 561
C C F+ + L H+R+H T K CDICG KF + K H I ++
Sbjct: 6 CRICMRNFSRSDHLTTHIRTH----TGEKPFACDICGRKFARSDERKRHRD-IQHILPIL 60
Query: 562 CIHCG 566
Sbjct: 61 EDKVE 65
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 60.5 bits (148), Expect = 1e-11
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
++ + C+ C KSF HKS RHM+ H + Y C +C + ++ K +L H+K+H G K
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 85 FTCAQCDKAFSLKSNLSKHVRHHMENVKQCKIC 117
+ C C K F + + +HV +
Sbjct: 66 YECNICAKRFMWRDSFHRHV-TSCTKSYEAAKA 97
Score = 56.3 bits (137), Expect = 5e-10
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
R + C +C K F K ++ HM H K Y+C +CA+ + ++ + H + K
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKS 91
Query: 85 FTCAQCDKAFSLKSNLS 101
+ A+ ++ + S S
Sbjct: 92 YEAAKAEQNTTEASGPS 108
Score = 53.6 bits (130), Expect = 5e-09
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 367 KCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQ 425
C C K++ + DRH+ H R + C CG++F+ + L+ H IH K ++C
Sbjct: 12 PCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQN 466
C + F + +H+ K + K + S +
Sbjct: 71 CAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGPSS 109
Score = 49.4 bits (119), Expect = 1e-07
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHE 444
+ + + C+ CG+ F + H +H + + C C + FK K HL H+ H
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGL-RPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 445 KVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHL 492
+K + C C K F HV ++ ++ + +
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGP 107
Score = 41.7 bits (99), Expect = 6e-05
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 422 KCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY 481
C QC +SF +K +H+ H ++ + C C K F+ + HL H+ +H + ++C
Sbjct: 12 PC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 482 CFKVFVHKAHLDKH 495
C K F+ + +H
Sbjct: 71 CAKRFMWRDSFHRH 84
Score = 40.1 bits (95), Expect = 3e-04
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTK 373
C + F ++ + H H + Y C C K FK HM+ H ++C++C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 374 AYPSEKNLDRHLLTHNVRRSFRCKSCGRRF 403
+ + RH + +S+ +
Sbjct: 74 RFMWRDSFHRH--VTSCTKSYEAAKAEQNT 101
Score = 38.2 bits (90), Expect = 0.001
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 219
H + C C K F + H + H K Y C+ C KRF D +H +
Sbjct: 32 HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV---TSC 88
Query: 220 EDAYVCNYCYDSFETKSTL 238
+Y + S
Sbjct: 89 TKSYEAAKAEQNTTEASGP 107
Score = 37.4 bits (88), Expect = 0.002
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 454 CPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHL 512
C K F H+S H+ +H + C C K F K HL H+ +H T + C+ C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH-TGIKPYECNICAK 73
Query: 513 TFTTDNDLIRHMRSHEEYHTKHTCDICGEKF 543
F + RH+ S + + +
Sbjct: 74 RFMWRDSFHRHVTSCTK---SYEAAKAEQNT 101
Score = 31.6 bits (73), Expect = 0.20
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 192 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPY 249
K Y C +C K F + +H H Y C C F+ K LV H H G PY
Sbjct: 9 KLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 250 MCNHC 254
CN C
Sbjct: 67 ECNIC 71
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 61.5 bits (150), Expect = 2e-11
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 14/143 (9%)
Query: 371 CTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH----------ERKF 420
+ K + S KSC R F + L+ H + +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 421 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEVHK 478
+C + +SFK K L H+ H K F C P C K+F +L+ H H + K
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 479 CLY--CFKVFVHKAHLDKHLILH 499
C + C + F + + KH+ +H
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVH 145
Score = 61.5 bits (150), Expect = 2e-11
Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 16/145 (11%)
Query: 398 SCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNKKHLKQHLLAH---------EKVK 447
S G + + + + I E C+ +F L H+
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 448 VFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSEM- 504
CP+ K F+ + L NH+ VH + C + C K+F +L H H T E
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH-TGEKP 120
Query: 505 HNCDF--CHLTFTTDNDLIRHMRSH 527
C+F C F +D +HM H
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 56.9 bits (138), Expect = 8e-10
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 19/145 (13%)
Query: 345 KVFKKSTSFDKHMEH---HNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFR------ 395
+ + + C + + + L H+ +V +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 396 ---CKSCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAHEKVKV 448
C G+ F+++ L+ H +H E K C C + F ++LK H H K
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGE-KPFPCPFPGCGKIFARSENLKIHKRTHTGEKP 120
Query: 449 FHC--PKCPKLFRHESHLQNHVIVH 471
F C C + F + S + H+ VH
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 56.1 bits (136), Expect = 2e-09
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 29 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFT 86
+C KSF K + H+ H +K + C C +++ NLK H + H G K F
Sbjct: 64 ECPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 87 CA--QCDKAFSLKSNLSKHVRHH 107
C CD+ F+ S+ KH+ H
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVH 145
Score = 53.4 bits (129), Expect = 1e-08
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 17/153 (11%)
Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH---------NRNV 364
+ + + + + + C + F H+ +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLS-RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 365 LHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKS--CGRRFESEELLIVHQVIH--ERKF 420
+C K++ ++ L H+ H + F C CG+ F E L +H+ H E+ F
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 421 HKCT--QCEESFKNKKHLKQHLLAHEKVKVFHC 451
KC C+ F N K+H+ H K
Sbjct: 122 -KCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 52.7 bits (127), Expect = 3e-08
Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 27/159 (16%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKS 133
+ + CD+ FS L HV H+ +Q E
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE----------- 64
Query: 134 HQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKK--CLKVFSDEIKFHLHGRAHA 191
CP + F ++ ++ NHI H E F C C K+F+ +H R H
Sbjct: 65 -------CPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
Query: 192 --KFYRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
K ++C C++RFA ++H H + + +
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPSS 154
Score = 50.0 bits (120), Expect = 2e-07
Identities = 32/147 (21%), Positives = 44/147 (29%), Gaps = 22/147 (14%)
Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH---------DESEV 476
S + K E C + F L HV +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHMRSHEEYHTK 533
+C K F K L H+ +H T E C F C F +L H R+ HT
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVH-TGEKPFPCPFPGCGKIFARSENLKIHKRT----HTG 117
Query: 534 ---HTCDI--CGEKFINDLKLKAHIKI 555
C+ C +F N K H+ +
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 48.4 bits (116), Expect = 8e-07
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 35 KSFDHKSNIRRHMAA--THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFT------ 86
S I++ ++ + Q K C R + L H+ M
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 87 ---CAQCDKAFSLKSNLSKHVRHH 107
C + K+F K L H+R H
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVH 85
Score = 43.4 bits (103), Expect = 4e-05
Identities = 27/176 (15%), Positives = 48/176 (27%), Gaps = 33/176 (18%)
Query: 230 DSFETKSTLVDHFFHH-----GNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKI 284
S + + C F L H +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTH-----------VTMEHV 50
Query: 285 EKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLY-- 342
+ ++C + F+ + KL H HT EK + C +
Sbjct: 51 GGP------------EQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPG 97
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRC 396
C K+F +S + H H KC C + + + + +H+ H +S
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 38.8 bits (91), Expect = 0.002
Identities = 37/172 (21%), Positives = 54/172 (31%), Gaps = 37/172 (21%)
Query: 198 ECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCF 255
+ + C +F T LV H H P NH
Sbjct: 2 SSGSSGQPIKQELSCKWI-DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV- 59
Query: 256 LMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQK---CR 312
EC F + YK+ H+ H T +K C
Sbjct: 60 --------CYWEECPREGK-SFKAK-YKLVNHIRVH---------------TGEKPFPCP 94
Query: 313 Y--CQRMFRNEDKLTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHH 360
+ C ++F + L H+ +HT EK +KC + C + F S+ KHM H
Sbjct: 95 FPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHMHVH 145
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 60.6 bits (148), Expect = 2e-11
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 25 ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHK 80
+R F C C K + S+++ H H +K Y+C C R + LK H + H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 81 GPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K F C C + FS +L H R H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 59.8 bits (146), Expect = 3e-11
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 25 ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
E+ ++C+ C + F ++RH H K ++CK C R + +LK H + H G
Sbjct: 34 EKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE 92
Query: 83 KIFTC--AQCDKAFSLKSNLSKHVRHH 107
K F+C C K F+ L +H H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 51.8 bits (125), Expect = 2e-08
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 9/114 (7%)
Query: 394 FRCK--SCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAHEKVK 447
F C C +R+ L +H H E K ++C CE F LK+H H VK
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGE-KPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 448 VFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILH 499
F C C + F HL+ H H + C + C K F L +H +H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 47.9 bits (115), Expect = 5e-07
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 421 HKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEV 476
C C + + HL+ H H K + C C + F L+ H H +
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHMRSH 527
+C C + F HL H H T E +C + C F ++L+RH H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTH-TGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 45.2 bits (108), Expect = 4e-06
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCHLC 371
C + + L H HT EK Y+C + C + F +S +H H +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEK-PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 372 TKAYPSEKNLDRHLLTHNVRRSFRCKS--CGRRFESEELLIVHQVIH 416
+ + +L H TH + F C+ C ++F + L+ H +H
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 40.6 bits (96), Expect = 2e-04
Identities = 35/168 (20%), Positives = 51/168 (30%), Gaps = 63/168 (37%)
Query: 55 KKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHMEN 110
+ + C C + Y +L+ H + H G K + C C++ FS L
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQL---------- 54
Query: 111 VKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKC 170
K HQ R H F+C
Sbjct: 55 ---------------------KRHQ----------RR--------------HTGVKPFQC 69
Query: 171 KKCLKVFSDEIKFHLHGRAHA--KFYRCS--ECEKRFATEDIMRQHFR 214
K C + FS H R H K + C C+K+FA D + +H
Sbjct: 70 KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 37.1 bits (87), Expect = 0.003
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 139 FKC--PCCERIFTSETRMRNHIDMKHADENLFKC--KKCLKVFSDEIKFHLHGRAHA--K 192
F C P C + + + ++ H KH E ++C K C + FS + H R H K
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 193 FYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDH 241
++C C+++F+ D ++ H R H E + C + C F LV H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 34.8 bits (81), Expect = 0.019
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHH 360
+C+ CQR F D L H +HT EK + C + C K F +S +H H
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHHNMH 119
Score = 29.4 bits (67), Expect = 1.3
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 194 YRCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDHF-FHHG-N 247
+ C+ C KR+ ++ H R H E Y C++ C F L H H G
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 248 PYMCNHCFLMFPDEKNLRNH 267
P+ C C F +L+ H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTH 85
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 56.3 bits (136), Expect = 2e-10
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMH---KGPKIFTCAQCDKAFSLKSNLSKHVR-HHMEN 110
+C++C R K +L H + H F C C K F +++ H H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 111 VKQCK 115
+ +
Sbjct: 66 LLAPQ 70
Score = 51.6 bits (124), Expect = 9e-09
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQ---KKYKCKLCARMYRYKWNLKAHLKMHKG 81
+CE+C + K+++ H H ++ C+ C + + ++ AH
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 82 PKIFTCAQCDKAFS 95
+ + S
Sbjct: 64 ALLLAPQESSGPSS 77
Score = 46.2 bits (110), Expect = 8e-07
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 394 FRCKSCGRRFESEELLIVHQVIHER----KFHKCTQCEESFKNKKHLKQHLLAHEKVKVF 449
+C+ CG + L HQ H C C + F+ + H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 450 HCPKCPK 456
+
Sbjct: 68 APQESSG 74
Score = 44.3 bits (105), Expect = 3e-06
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 421 HKCTQCEESFKNKKHLKQHLLAH---EKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+C C + + K L H H F C C K F + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 41.6 bits (98), Expect = 3e-05
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEMHN---CDFCHLTFTTDNDLIRHMRSHEEYHTK 533
+C C KA L+ H H + C+FC F + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 534 HTCDICG 540
+ G
Sbjct: 68 APQESSG 74
Score = 41.2 bits (97), Expect = 5e-05
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK----QCKICLEIFEDDEVLEEHVKSH 134
G C C K++L+ H R H E V C+ C + FE + + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 135 QNRRFKCPCC 144
P
Sbjct: 62 HPALLLAPQE 71
Score = 41.2 bits (97), Expect = 5e-05
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 505 HNCDFCHLTFTTDNDLIRHMRSH--EEYHTKHTCDICGEKFINDLKLKAHIKIIH 557
C+ C T L H R H + C+ CG++F + AH H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 40.1 bits (94), Expect = 1e-04
Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 4/77 (5%)
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHK---CHLCTKAYPSEKNLDRHLLT 387
+ +C C ++ S + H H V C C K + ++ H
Sbjct: 2 SSGSSG-LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 388 HNVRRSFRCKSCGRRFE 404
+ +
Sbjct: 61 SHPALLLAPQESSGPSS 77
Score = 40.1 bits (94), Expect = 1e-04
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 449 FHCPKCPKLFRHESHLQNHVIVHDESEVHK---CLYCFKVFVHKAHLDKHLILHETSEMH 505
C C R ++ L H H E+ C +C K F + H + +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 506 NC 507
Sbjct: 68 AP 69
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTL--YKCLYCHKVFKKSTSFDKHMEHHNRNVLHK 367
+C C R + L H+ H + C +C K F+K S H + +L
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA 68
Query: 368 CHLCTK 373
+
Sbjct: 69 PQESSG 74
Score = 39.3 bits (92), Expect = 2e-04
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVR---RSFRCKSCGRRFESEELLIVHQVIH 416
+C +C + +L+ H H F C+ CG+RFE + + H+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 39.3 bits (92), Expect = 2e-04
Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 168 FKCKKCLKVFSDEIKFHLHGRAHA-----KFYRCSECEKRFATEDIMRQHFRNYHNKEDA 222
+C+ C + + H R HA + C C KRF D + H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 223 YVCNYC 228
Sbjct: 68 APQESS 73
Score = 33.9 bits (78), Expect = 0.016
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDA---YVCNYCYDSFETKSTLVDHF-FHHGNPY 249
+C C + + H R H + A + C +C FE ++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 250 MC 251
+
Sbjct: 67 LA 68
Score = 32.0 bits (73), Expect = 0.091
Identities = 15/66 (22%), Positives = 18/66 (27%), Gaps = 7/66 (10%)
Query: 534 HTCDICGEKFINDLKLKAHIKIIHNL------FTCIHCGDTLNNAKDYASHLLIIHNIES 587
C+ICG L H + H F C CG A+H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 588 SQQVEK 593
E
Sbjct: 67 LAPQES 72
Score = 28.1 bits (63), Expect = 1.8
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 139 FKCPCCERIFTSETRMRNHIDMKHAD---ENLFKCKKCLKVFSDEIKFHLHGRAHAKFYR 195
+C C + + H KHA+ F C+ C K F H
Sbjct: 8 LQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 196 CSECEK 201
+ E
Sbjct: 67 LAPQES 72
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 55.6 bits (135), Expect = 3e-10
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 49 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
++ KC C+ K L+ H ++H + F C C SNLSKH++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 42.1 bits (100), Expect = 2e-05
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 421 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
KC++C S +K L+ H H + F C C + S+L H+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 41.3 bits (98), Expect = 3e-05
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 394 FRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAH 443
+C C S+ L +H+ IH +R F KC C K +L +H+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPF-KCNYCSFDTKQPSNLSKHMKKF 60
Score = 39.8 bits (94), Expect = 1e-04
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 187 GRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
G + + +CSEC +++ +R H R H + + CNYC + S L H
Sbjct: 1 GSSGSSGHPEKCSECSYSCSSKAALRIHERI-HCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 37.5 bits (88), Expect = 8e-04
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 499
C +C ++ L+ H +H KC YC ++L KH+
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 37.1 bits (87), Expect = 0.001
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
KC C ++ L HE H ++ +KC YC K+ ++ KHM+
Sbjct: 11 KCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKF 60
Score = 36.3 bits (85), Expect = 0.002
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 330 SHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTH 388
S + KC C + H H + KC+ C+ NL +H+
Sbjct: 3 SGSSGHP-EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 35.2 bits (82), Expect = 0.005
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
KC C KA L H +H T C++C ++L +HM+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 35.2 bits (82), Expect = 0.006
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 161 KHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFR 214
+ + KC +C S + +H R H + ++C+ C + +H +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 31.3 bits (72), Expect = 0.13
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATH 51
+R FKC C SN+ +HM
Sbjct: 35 DRPFKCNYCSFDTKQPSNLSKHM-KKF 60
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 58.0 bits (141), Expect = 3e-10
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAA--THDLQKKYKCKLCARMYRYK-----WNLKAHLK 77
E + + C + FD + + H+ + H +K++ C + + L H++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 78 MHKGPKIFTC--AQCDKAFSLKSNLSKHVRHH 107
H G K C C K++S NL H+R H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 54.9 bits (133), Expect = 5e-09
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 18/151 (11%)
Query: 338 YKCLYCHKVFKKSTSFDKHMEH---HNRNVLHKCHLC-----TKAYPSEKNLDRHLLTHN 389
+ C + F H+ H CH + + ++ L H+ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 390 VRRSFRCKS--CGRRFESEELLIVHQVIH--ERKFHKCTQ--CEESFKNKKHLKQHLL-A 442
+ +C C + + E L H H E+ + C C ++F N +H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY-MCEHEGCSKAFSNASDRAKHQNRT 122
Query: 443 HEKVKVFHC--PKCPKLFRHESHLQNHVIVH 471
H K + C P C K + S L+ HV
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 52.2 bits (126), Expect = 4e-08
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 16/150 (10%)
Query: 394 FRCKSCGRRFESEELLIVH---QVIH-ERKFHKCTQCE-----ESFKNKKHLKQHLLAHE 444
R C + F+S+E L+ H + IH ERK C FK + L H+ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 445 KVKVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKC--LYCFKVFVHKAHLDKHLILHE 500
K C C K + +L+ H+ H + + C C K F + + KH
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 501 TSEM-HNCDF--CHLTFTTDNDLIRHMRSH 527
++E + C C +T + L +H+++
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 51.1 bits (123), Expect = 9e-08
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 30 CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTC 87
C + F + + HM H +K +KC C + Y NLK HL+ H G K + C
Sbjct: 42 CSRELRPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100
Query: 88 AQ--CDKAFSLKSNLSKHVR--HHMENVKQCKI--CLEIFEDDEVLEEHVKSH 134
C KAFS S+ +KH H E CK+ C + + D L +HVK+
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 46.4 bits (111), Expect = 4e-06
Identities = 36/171 (21%), Positives = 51/171 (29%), Gaps = 35/171 (20%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVR----HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR 138
C + F + L H+ H C
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG--------------------- 40
Query: 139 FKCPCCERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAHA--KFY 194
C R F ++ + H+ +H E KC C K +S H R+H K Y
Sbjct: 41 -GCSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98
Query: 195 RCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDH 241
C C K F+ +H H+ E YVC C + S+L H
Sbjct: 99 MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 46.0 bits (110), Expect = 5e-06
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 422 KCTQCEESFKNKKHLKQHLLA---HEKVKVFHC-----PKCPKLFRHESHLQNHVIVHDE 473
+ C + F +++ L H+ + H + K F C + + F+ + L H+ H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 474 SEVHKCLY--CFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHM-RSH 527
+ HKC + C K + +L HL H T E + C+ C F+ +D +H R+H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSH-TGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 528 EEYHTK-HTCDI--CGEKFINDLKLKAHIKI 555
+ K + C + C +++ + L+ H+K
Sbjct: 124 --SNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 44.1 bits (105), Expect = 2e-05
Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 27/130 (20%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVI---VHDESEVHKCLYC-----FKVFVHKAHLDKHLIL 498
C + F + L +H+ +H E + C + + F + L H+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 499 HETSEM-HNCDF--CHLTFTTDNDLIRHMRSH--------EEYHTKHTCDICGEKFINDL 547
H T E H C F C +++ +L H+RSH E + C + F N
Sbjct: 62 H-TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH-------EGCSKAFSNAS 113
Query: 548 KLKAHIKIIH 557
H H
Sbjct: 114 DRAKHQNRTH 123
Score = 44.1 bits (105), Expect = 2e-05
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 28/85 (32%)
Query: 25 ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
E+ + CE C K+F + S+ +H TH +K Y CK
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK---------------------- 132
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHH 107
C K ++ S+L KHV+
Sbjct: 133 ----LPGCTKRYTDPSSLRKHVKTV 153
Score = 43.4 bits (103), Expect = 4e-05
Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 46/183 (25%)
Query: 248 PYMCNHCFLMFPDEKNLRNHECTSC-------FTCPFCQRKYKIEKHLEKHIESCIQLNP 300
+ C F ++ L +H + F C +
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG---------------------- 40
Query: 301 TTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHME 358
C R F+ + L H HT EK +KC + C K + + + H+
Sbjct: 41 ---------GCSRELRPFKAQYMLVVHMRRHTGEK-PHKCTFEGCRKSYSRLENLKTHLR 90
Query: 359 HHNRNVLHKCH--LCTKAYPSEKNLDRHLL-THNVRRSFRCKS--CGRRFESEELLIVHQ 413
H + C C+KA+ + + +H TH+ + + CK C +R+ L H
Sbjct: 91 SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Query: 414 VIH 416
Sbjct: 151 KTV 153
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 55.6 bits (135), Expect = 4e-10
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 25 ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHK 80
C+ C + F ++ + H H QK + C C + + +K +LK H+K+H
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
Query: 81 GPKIFTCAQCDKAF 94
+ + C +
Sbjct: 65 DTRDYICEFSGPSS 78
Score = 39.1 bits (92), Expect = 2e-04
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 394 FRCKS--CGRRFESEELLIVHQVI---HERKFHKCTQ--CEESFKNKKHLKQHLLAHEKV 446
C CGR F + + L H+ H++ F C + C +SF KKHLK+H+ H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSF-SCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 447 KVFHCPKCPKLF 458
+ + C
Sbjct: 67 RDYICEFSGPSS 78
Score = 38.3 bits (90), Expect = 5e-04
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 416 HERKFHKCT--QCEESFKNKKHLKQHL-LAHEKVKVFHCP--KCPKLFRHESHLQNHVIV 470
C C F N+++L H H K F CP C K F + HL+ H+ +
Sbjct: 4 GSSGM-PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 471 HDESEVHKCLYCFKVF 486
H ++ + C +
Sbjct: 63 HSDTRDYICEFSGPSS 78
Score = 35.2 bits (82), Expect = 0.005
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 331 HTMEKTLYKCLY--CHKVFKKSTSFDKHM-EHHNRNVLHKC--HLCTKAYPSEKNLDRHL 385
+ C + C ++F + H H C C K++ +K+L H+
Sbjct: 2 SSGSSG-MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 386 LTHNVRRSFRCKSCGRRF 403
H+ R + C+ G
Sbjct: 61 KLHSDTRDYICEFSGPSS 78
Score = 34.8 bits (81), Expect = 0.008
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 194 YRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDHF-FHHG-N 247
C C + F+ + H + H + ++ C C SF K L +H H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 248 PYMCNHC 254
Y+C
Sbjct: 68 DYICEFS 74
Score = 34.8 bits (81), Expect = 0.009
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 139 FKCPC--CERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAHA--K 192
C C RIF++ + +H +H + F C C K F+ + H + H+ +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 193 FYRCSECEKRF 203
Y C
Sbjct: 68 DYICEFSGPSS 78
Score = 29.8 bits (68), Expect = 0.45
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 482 CFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHMRSHEEYHTK---HT 535
C ++F ++ +L+ H + +C C +F L HM+ H+ +
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL----HSDTRDYI 70
Query: 536 CDICGEKF 543
C+ G
Sbjct: 71 CEFSGPSS 78
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 56.3 bits (135), Expect = 5e-10
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAAT----HDLQKKYKCKLCARMYRYKWNLKAHLKMHK 80
KF+C+ C ++D + HM T D + K +L
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 81 GPKIFTCAQCDKAFSLKSNLSKHV--RHHMENV 111
K+ C C +F +LS H+ H + V
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
Score = 50.5 bits (120), Expect = 7e-08
Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 8/107 (7%)
Query: 71 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK------QCKICLEIFEDD 124
+ K + + G F C C A+ L+ H+
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 125 EVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNH-IDMKHADENLFK 169
L E ++ KC C F S + H I KH +
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 47.5 bits (112), Expect = 8e-07
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 377 SEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEE------SF 430
S + + FRCK C +++ L VH + + S
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 431 KNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVI 469
K+ L + + KV C C F L H+I
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 45.9 bits (108), Expect = 3e-06
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 324 LTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHME--HHNRNVLHKCHLCTKAY---PSE 378
+ T ++C C + HM H R+ H+ P +
Sbjct: 7 GKLYGSIFTGASK-FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 379 KNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVH 412
++L + ++ +C CG FES + L VH
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 44.0 bits (103), Expect = 1e-05
Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 435 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIV-----HDESEVHKCLYCFKVFVHK 489
K + F C C + L H+ D E K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 490 AHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEY 530
L + + ++ C +C +F + DL HM + Y
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106
Score = 36.7 bits (84), Expect = 0.004
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 349 KSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHL-----LTHNVRRSFRCKSCGRRF 403
+S + +C C+ AY + L H+ + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 404 ESEELLIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHL 440
+ L+ + + +K KC C SF++ + L H+
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 35.9 bits (82), Expect = 0.007
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 462 SHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLIL--HETSEMHNCDFCHLTFTTDND 519
S + + + + +C C + L H+ H + H D + +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 520 LIRHMRSHEEYHTK--HTCDICGEKFINDLKLKAHIK 554
+ + + C CG F + L H+
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 35.5 bits (81), Expect = 0.012
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 185 LHGRAH--AKFYRCSECEKRFATEDIMRQHFR-NYHNKEDAYVCNYCYDSFETKSTLVDH 241
L+G A +RC +C + T + H H ++D + + +K
Sbjct: 9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSL 68
Query: 242 FFHHGN-----PYMCNHCFLMFPDEKNLRNH 267
G C +C F ++L H
Sbjct: 69 LEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 35.1 bits (80), Expect = 0.018
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 11/86 (12%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDHFFHHG-------NPYMCNHCFLMFPDEKNLRNHEC 269
+ C C +++T L H G N P +++L E
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG 73
Query: 270 T----SCFTCPFCQRKYKIEKHLEKH 291
C +C ++ + L H
Sbjct: 74 KEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 34.4 bits (78), Expect = 0.024
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 310 KCRYCQRMFRNEDKLTAH--ELSHTMEKTL--YKCLYCHKVFKKSTSFDKHMEHHNRNVL 365
+C+ C + +LT H E H + + S + + +
Sbjct: 21 RCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV 80
Query: 366 HKCHLCTKAYPSEKNLDRHLLTHN 389
KC C ++ S ++L H++
Sbjct: 81 LKCMYCGHSFESLQDLSVHMIKTK 104
Score = 28.6 bits (63), Expect = 2.9
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 12 QEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 56
+ + +GK ++ KC C SF+ ++ HM T QK
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 54.5 bits (132), Expect = 1e-09
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGP 82
C K++ S+++ H+ TH +K Y C C + L H + H G
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHHM 108
+ F C +CD+AFS +L+ H++ H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 47.1 bits (113), Expect = 5e-07
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 388 HNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAH 443
+ CG+ + L H H E+ + C C F L +H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPY-HCDWDGCGWKFARSDELTRHYRKH 60
Query: 444 EKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ F C KC + F HL H+ H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 46.0 bits (110), Expect = 1e-06
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 416 HERKF-HKCTQCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHD 472
C +++ HLK HL H K +HC C F L H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 473 ESEVHKCLYCFKVFVHKAHLDKHLILH 499
+C C + F HL H+ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 45.2 bits (108), Expect = 2e-06
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKC--LYCFKVFVHKAHLDKHLILHE 500
C K + SHL+ H+ H + + C C F L +H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 501 TSEMHNCDFCHLTFTTDNDLIRHMRSH 527
C C F+ + L HM+ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 44.8 bits (107), Expect = 3e-06
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 51 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHM 108
C + Y +LKAHL+ H G K + C C F+ L++H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 109 -ENVKQCKICLEIFEDDEVLEEHVKSH 134
QC+ C F + L H+K H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 41.0 bits (97), Expect = 8e-05
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTH 388
T T C K + KS+ H+ H + C C + L RH H
Sbjct: 2 RTATHT-CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 389 NVRRSFRCKSCGRRFESEELLIVHQVIH 416
R F+C+ C R F + L +H H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 40.6 bits (96), Expect = 1e-04
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVLEEHVKSHQ 135
A C K ++ S+L H+R H E C C F + L H + H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 136 N-RRFKCPCCERIFT 149
R F+C C+R F+
Sbjct: 62 GHRPFQCQKCDRAFS 76
Score = 34.4 bits (80), Expect = 0.016
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 129 EHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKK--CLKVFSDEIKFHLH 186
+ +H C + +T + ++ H+ H E + C C F+ + H
Sbjct: 1 KRTATH---TCDYAGCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Query: 187 GRAH--AKFYRCSECEKRFATEDIMRQHFR 214
R H + ++C +C++ F+ D + H +
Sbjct: 57 YRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 34.0 bits (79), Expect = 0.017
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKC--LYCHKVFKKSTSFDKHMEHHNRNVLHK 367
C + + L AH +HT EK Y C C F +S +H H + +
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 368 CHLCTKAYPSEKNLDRHLLTH 388
C C +A+ +L H+ H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 53.7 bits (130), Expect = 2e-09
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATH----DLQKKYKCKLCARMYRYKWNLKAHLKMHK 80
E+ + C C K+F K + H + + + C C + + + + H
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA 71
Query: 81 GPKIFTCAQCDKAF 94
GP +
Sbjct: 72 GPDGVEGENSGPSS 85
Score = 49.1 bits (118), Expect = 9e-08
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKG----PKIFTCAQCDKAFSLKSNLSKHVR 105
TH +K Y C C + +R K L H K + P F C++C K F+ ++ +++H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 106 HH 107
+
Sbjct: 69 NC 70
Score = 47.1 bits (113), Expect = 4e-07
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 409 LIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAH----EKVKVFHCPKCPKLFRHES 462
H E K + C+ C+++F+ K+ L H + F C KC K F +
Sbjct: 3 SGSSGRTHTGE-KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 463 HLQNHVIVHDESEVHKCLYCFKVF 486
+ H + +
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 46.4 bits (111), Expect = 9e-07
Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 25/108 (23%)
Query: 71 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEE 129
+ + + H G K + C+ CDK F K L H + +H N
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP---------------- 45
Query: 130 HVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVF 177
F C C + FT M H D A + + +
Sbjct: 46 -------AAFVCSKCGKTFTRRNTMARHADN-CAGPDGVEGENSGPSS 85
Score = 46.4 bits (111), Expect = 9e-07
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 380 NLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-----ERKFHKCTQCEESFKNKK 434
+ TH + + C C + F ++LL +H + C++C ++F +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 435 HLKQHLLAHEKVKVFHCPKCPKLF 458
+ +H
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 43.7 bits (104), Expect = 7e-06
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 324 LTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHME-HHNRNVLHK---CHLCTKAYPSEK 379
+ +HT EK Y C +C K F++ D H + +H+ N + C C K +
Sbjct: 3 SGSSGRTHTGEKP-YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 380 NLDRHLLTHNVRRSFRCKSCGRRF 403
+ RH ++ G
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 42.1 bits (100), Expect = 2e-05
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYH---NKEDAYVCNYCYDSFETKSTLVD 240
GR H K Y CS C+K F + ++ HF+ YH A+VC+ C +F ++T+
Sbjct: 6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 241 H-FFHHG-NPYMCNHC 254
H G + +
Sbjct: 66 HADNCAGPDGVEGENS 81
Score = 36.3 bits (85), Expect = 0.003
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTL---YKCLYCHKVFKKSTSFDKHMEHHNRNVLH 366
C +C + FR + L H + + + C C K F + + +H ++
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGV 76
Query: 367 KCHLCTKAY 375
+ +
Sbjct: 77 EGENSGPSS 85
Score = 36.0 bits (84), Expect = 0.004
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 463 HLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN-----CDFCHLTFTTD 517
+ H + + C +C K F K LD H + C C TFT
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY-HDPNFVPAAFVCSKCGKTFTRR 60
Query: 518 NDLIRHMRSH 527
N + RH +
Sbjct: 61 NTMARHADNC 70
Score = 33.3 bits (77), Expect = 0.033
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 20 GKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC 62
+ F C C K+F ++ + RH + +
Sbjct: 40 DPNFVPAAFVCSKCGKTFTRRNTMARHA-DNCAGPDGVEGENS 81
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 52.6 bits (127), Expect = 4e-09
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHL--KMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
T + + Y+CK+C+R+Y + N H + K++ C C K F+ K N++ HV+
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 45.2 bits (108), Expect = 1e-06
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 421 HKCTQCEESFKNKKHLKQHL--LAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
++C C + + + +H VKV+ CP C K F + ++ HV +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 42.5 bits (101), Expect = 1e-05
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 443 HEKVKVFHCPKCPKLFRHESHLQNH--VIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 499
E + C C +++ H S+ H +V+ C +CFK F K ++ H+ +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 41.8 bits (99), Expect = 2e-05
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQVIH---ERKFHKCTQCEESFKNKKHLKQHLLAH 443
T ++RCK C R + H V K + C C + F K ++ H+
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 444 EKV 446
K+
Sbjct: 64 HKI 66
Score = 39.8 bits (94), Expect = 1e-04
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 328 ELSHTMEKTLYKCLYCHKVFKKSTSFDKHM--EHHNRNVLHKCHLCTKAYPSEKNLDRHL 385
E + E T Y+C C +V+ ++F +H H ++ C C K + + N+ H+
Sbjct: 2 EFTKEGEHT-YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 386 LTHN 389
+
Sbjct: 61 KIIH 64
Score = 37.1 bits (87), Expect = 8e-04
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 310 KCRYCQRMFRNEDKLTAHELS--HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNR 362
+C+ C R++ + H ++ K Y C +C K F + + H++ ++
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 36.8 bits (86), Expect = 0.001
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA----KFYRCSECEKRFATEDIMRQHFRNYH 217
E+ ++CK C +V++ F H K Y C C K F +D M H + H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSE--MHNCDFCHLTFTTDNDLIRHMRSH 527
++C C +V+ H ++ +H + ++ C FC FT +++ H++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 35.2 bits (82), Expect = 0.004
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 26/85 (30%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR 138
+G + C C + ++ SN +H +N +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYV-------------------------TSHKRNVK 39
Query: 139 -FKCPCCERIFTSETRMRNHIDMKH 162
+ CP C + FT + M H+ + H
Sbjct: 40 VYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 35.2 bits (82), Expect = 0.005
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 507 CDFCHLTFTTDNDLIRHMRSHEEYHTK---HTCDICGEKFINDLKLKAHIKIIHNL 559
C C +T ++ RH + + + C C ++F + AH+KIIH +
Sbjct: 13 CKVCSRVYTHISNFCRHYVTS--HKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 31.0 bits (71), Expect = 0.13
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDHF--FHHGN--PYMCNHCFLMFPDEKNLRNHE 268
E Y C C + S H+ H N Y C CF F + N+ H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 30.2 bits (69), Expect = 0.29
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDL 53
+ + C C K F K N+ H+ H +
Sbjct: 38 VKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 52.1 bits (126), Expect = 5e-09
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 409 LIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAH--EKVKVFHCPKCPKLFRHESHL 464
H E+ + +C C F +K H+L E V FHCP C + +S L
Sbjct: 3 SGSSGRTHSGEKPY-ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 465 QNHV 468
H+
Sbjct: 62 GVHL 65
Score = 49.1 bits (118), Expect = 8e-08
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 71 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVK--QCKICLEIFEDDEVL 127
+ + + H G K + C C F+ + H+ H ENV C C + L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 128 EEHVKSH 134
H++
Sbjct: 62 GVHLRKQ 68
Score = 46.4 bits (111), Expect = 6e-07
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAA-THDLQKKYKCKLCARMYRYKWNLKAHL-KMHKGP 82
E+ ++C +C F ++ H+ + K+ C C + K +L HL K H
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Query: 83 K 83
Sbjct: 73 G 73
Score = 46.0 bits (110), Expect = 8e-07
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 435 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH--DESEVHKCLYCFKVFVHKAHL 492
H K + C C F ++ H++ + C +C V K+ L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 493 DKHLILHETSE 503
HL +
Sbjct: 62 GVHLRKQHSYS 72
Score = 41.4 bits (98), Expect = 4e-05
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 491 HLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSH-EEYHTKHTCDICGEKFINDLK 548
H + E + C CH FT + H+ E K C C
Sbjct: 2 SSGSSGRTH-SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 549 LKAHIKIIH 557
L H++ H
Sbjct: 61 LGVHLRKQH 69
Score = 41.0 bits (97), Expect = 5e-05
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 168 FKCKKCLKVFSDEIKFHLHGRAH----AKFYRCSECEKRFATEDIMRQHFRNYHNKEDAY 223
++C C F+ +H + C C+ A + + H R H+
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 39.4 bits (93), Expect = 2e-04
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 323 KLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVL--HKCHLCTKAYPSEKN 380
+ +H+ EK Y+C CH F +S + H+ + + C C + +
Sbjct: 2 SSGSSGRTHSGEKP-YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 381 LDRHLLTH 388
L HL
Sbjct: 61 LGVHLRKQ 68
Score = 36.0 bits (84), Expect = 0.003
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTL-YKCLYCHKVFKKSTSFDKHM 357
+C C F + H L E + C +C V + + H+
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 33.6 bits (78), Expect = 0.019
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 24 QERKFKCEMCPKSFDHKSNIRRHMAATH 51
KF C C KS++ H+ H
Sbjct: 42 NVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 30.6 bits (70), Expect = 0.26
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 520 LIRHMRSHEEYHTK---HTCDICGEKFINDLKLKAHIKIIHNL----FTCIHCGDTLNNA 572
R+H + + C IC +F +K HI H F C HC +
Sbjct: 3 SGSSGRTH----SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Query: 573 KDYASHLLIIH 583
D HL H
Sbjct: 59 SDLGVHLRKQH 69
Score = 29.8 bits (68), Expect = 0.43
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 223 YVCNYCYDSFETKSTLVDHF-FHHGN---PYMCNHCFLMFPDEKNLRNH 267
Y C C+ F T+ H H + C HC + + +L H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 52.6 bits (127), Expect = 7e-09
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 25 ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHK 80
R C+ C K + S+++ H+ TH +K YKC C + L H + H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Query: 81 GPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K F C C+++FS +L+ H++ H
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 47.6 bits (114), Expect = 5e-07
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 352 SFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRC--KSCGRRFESEE 407
S + +H C CTK Y +L HL TH + ++C + C RF +
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 408 LLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHE 444
L H H + F +C C SF HL H+ H+
Sbjct: 62 ELTRHYRKHTGAKPF-QCGVCNRSFSRSDHLALHMKRHQ 99
Score = 45.7 bits (109), Expect = 2e-06
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 391 RRSFRCK--SCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAHE 444
RR C C + + L H H E+ + KCT C+ F L +H H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPY-KCTWEGCDWRFARSDELTRHYRKHT 71
Query: 445 KVKVFHCPKCPKLFRHESHLQNHVIVH 471
K F C C + F HL H+ H
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 44.2 bits (105), Expect = 6e-06
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 418 RKFHKCT--QCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDE 473
R+ H C C + + HLK HL H K + C C F L H H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 474 SEVHKCLYCFKVFVHKAHLDKHLILHE 500
++ +C C + F HL H+ H+
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 43.0 bits (102), Expect = 2e-05
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 439 HLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKC--LYCFKVFVHKAHLDKHL 496
L ++ P C K++ SHL+ H+ H + +KC C F L +H
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Query: 497 ILHETSEMHNCDFCHLTFTTDNDLIRHMRSHE 528
H ++ C C+ +F+ + L HM+ H+
Sbjct: 68 RKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 39.1 bits (92), Expect = 4e-04
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 318 FRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAY 375
+ H + C KV+ KS+ H+ H +KC C +
Sbjct: 3 SGSSGPDLEKRRIHYCDYP-----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 376 PSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHE 417
L RH H + F+C C R F + L +H H+
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 36.5 bits (85), Expect = 0.003
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 127 LEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKC--KKCLKVF--SDEIK 182
E + H P C +++T + ++ H+ H E +KC + C F SDE+
Sbjct: 9 DLEKRRIH---YCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELT 64
Query: 183 FHLHGRAH--AKFYRCSECEKRFATEDIMRQHFR 214
H R H AK ++C C + F+ D + H +
Sbjct: 65 RHY--RKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 34.9 bits (81), Expect = 0.012
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 313 YCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
C F D+LT H HT K ++C C++ F +S HM+ H
Sbjct: 52 GCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHMKRH 98
Score = 34.1 bits (79), Expect = 0.024
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 168 FKCKK--CLKVFSDEIKFHLHGRAHA--KFYRCS--ECEKRFATEDIMRQHFRNYHNKED 221
C C KV++ H R H K Y+C+ C+ RFA D + +H+R H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAK 74
Query: 222 AYVCNYCYDSFETKSTLVDHFFHHGN 247
+ C C SF L H H N
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 33.8 bits (78), Expect = 0.035
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 71 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVL 127
++H C K ++ S+L H+R H E +C C F + L
Sbjct: 8 PDLEKRRIHYCDY----PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL 63
Query: 128 EEHVKSHQN-RRFKCPCCERIFT 149
H + H + F+C C R F+
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFS 86
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 51.7 bits (125), Expect = 9e-09
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 41 SNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNL 100
+ H K YKC C +RYK NL +H +H G K + C C F+ +NL
Sbjct: 3 HHHHHHSH-MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 101 SKHVRHH 107
H R H
Sbjct: 62 KTHTRIH 68
Score = 41.7 bits (99), Expect = 3e-05
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 435 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 494
H H K + C +C FR++ +L +H VH + ++C C F A+L
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 495 HLILH 499
H +H
Sbjct: 64 HTRIH 68
Score = 39.7 bits (94), Expect = 1e-04
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 380 NLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLK 437
+ H + + ++C C F + L H+ +H E K ++C C F +LK
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE-KPYRCNICGAQFNRPANLK 62
Query: 438 QH 439
H
Sbjct: 63 TH 64
Score = 37.0 bits (87), Expect = 0.001
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 462 SHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLI 521
H +H + + +KC C F +K +L H +H + + C+ C F +L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 522 RHMRSH 527
H R H
Sbjct: 63 THTRIH 68
Score = 36.7 bits (86), Expect = 0.001
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 324 LTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDR 383
H +K YKC C F+ + H H ++C++C + NL
Sbjct: 5 HHHHSHMTHSDKP-YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 384 HLLTH 388
H H
Sbjct: 64 HTRIH 68
Score = 35.1 bits (82), Expect = 0.005
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
KC CQ FR + L +H+ HT EK Y+C C F + + H H
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRIH 68
Score = 34.0 bits (79), Expect = 0.013
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFR 214
+ +KC +C F + H H K YRC+ C +F ++ H R
Sbjct: 12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 27.4 bits (62), Expect = 2.8
Identities = 18/120 (15%), Positives = 28/120 (23%), Gaps = 55/120 (45%)
Query: 71 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 130
+ H M K + C +C +F K NL+
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLAS---------------------------- 35
Query: 131 VKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 190
H+ + H E ++C C F+ H R H
Sbjct: 36 ---HK----------TV--------------HTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 26.6 bits (60), Expect = 5.9
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHM 47
E+ ++C +C F+ +N++ H
Sbjct: 43 EKPYRCNICGAQFNRPANLKTHT 65
Score = 26.3 bits (59), Expect = 7.1
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNH 267
+ + Y C+ C SF K L H H G PY CN C F NL+ H
Sbjct: 12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 3e-08
Identities = 70/532 (13%), Positives = 136/532 (25%), Gaps = 168/532 (31%)
Query: 70 WNLKAHL-KMHKGPKIF---------TC--AQCDKAFSLKSNLSKHVRHHMENVKQCKIC 117
L+ L ++ + T ++ ++ + + N+K C
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCN-- 193
Query: 118 LEIFEDDEVLEEHVKSHQN--RRFKCPCCERIFTSETRMRNHIDMKHADENLFKCK---K 172
+ VLE Q + R S ++ L K K
Sbjct: 194 ----SPETVLEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 173 CLKVFSD----EI--KFHLHGRAHAKFYRCSECEKRFATEDI---------MRQHFRNYH 217
CL V + + F+L C+ T H H
Sbjct: 246 CLLVLLNVQNAKAWNAFNLS------------CKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 218 NKEDAYVCNYCYDSFETKSTLVDHFFHH-----------GNPYMCNHCFLMFPDEKNLRN 266
+ E KS L+ + NP + + + +R+
Sbjct: 294 HSMT-------LTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLS----IIAES--IRD 339
Query: 267 HECTSCFTCPFCQRKYKIEKHLEKHIESCI-QLNPTTTVLKTLQKCRYCQ-RMFRNEDKL 324
T + +K L IES + L P + + + +F +
Sbjct: 340 GLATWDNW-----KHVNCDK-LTTIIESSLNVLEP------AEYRKMFDRLSVFPPSAHI 387
Query: 325 TAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCH---LCTKAYPSEKNL 381
L L + D V++K H L EK
Sbjct: 388 P--------TILL--SLI----WFDVIKSDV------MVVVNKLHKYSLV------EKQP 421
Query: 382 DRHLLT-HNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNK------ 433
++ ++ + K E +H+ I + K ++
Sbjct: 422 KESTISIPSIYLELKVK-------LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 434 KHLKQHLLA---HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVF---- 486
H+ HL E++ +F +F L+ + HD + +
Sbjct: 475 SHIGHHLKNIEHPERMTLF-----RMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQLK 528
Query: 487 VHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEE--YHTKHTC 536
+K ++ + E N ++ + EE +K+T
Sbjct: 529 FYKPYICDN---DPKYERL-----------VNAILDFLPKIEENLICSKYTD 566
Score = 54.9 bits (131), Expect = 9e-08
Identities = 72/626 (11%), Positives = 151/626 (24%), Gaps = 200/626 (31%)
Query: 156 NHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRN 215
+H+D + E+ ++ K L VF D + C + +D+ +
Sbjct: 5 HHMDFE-TGEHQYQYKDILSVFEDAFV---------DNFDCKD------VQDMPKSILSK 48
Query: 216 Y---------HNKEDAYVCNYCYDSFETK-STLVDHFFHHGNPYMCNHCFLM--FPDEKN 263
+ + +K +V F N+ FLM E+
Sbjct: 49 EEIDHIIMSKDAVSGTL---RLFWTLLSKQEEMVQKFV--EEVLRINYKFLMSPIKTEQR 103
Query: 264 LRNHECTSCFTC---------PFCQRKYKIEKHLEKHIESCIQLNP-------------- 300
+ F + + K ++ ++L P
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 301 TTTVLKTLQ----KCRYCQRMF----RNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTS 352
T L +C+ ++F +N + E M + L +++ TS
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETVLEMLQKL-----LYQIDPNWTS 215
Query: 353 FDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTH-----------NVRRS-------F 394
H N+ + H S + R LL NV+ +
Sbjct: 216 RSDHSS----NIKLRIH-------SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 395 RCK--------SCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKV 446
CK + + H + + + L E +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVL 323
Query: 447 KV--FHCPKCPKLFRHE-SHLQN----------HVI-----VHDESEVHKCLYCFKVF-- 486
+ R + N +I V + +E K VF
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 487 --------------------------------------------VHKAHLDKHLILHETS 502
+ +L+ + L
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 503 EMHN---------CDFCHLTFTTDND-------LIRHMRSHEEYHTKHTCDICGEKFIND 546
+H F + H+++ E + F++
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM---TLFRMVFLDF 500
Query: 547 LKLKAHIKIIHNLFTCIHCG---DTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLT 603
L+ KI H+ G +TL K Y + I N +++ + + +
Sbjct: 501 RFLEQ--KIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIE 556
Query: 604 THIEYHHSQNNIESESNQSSGFMYND 629
++ + + ++ +
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 47.5 bits (112), Expect = 1e-05
Identities = 65/392 (16%), Positives = 118/392 (30%), Gaps = 107/392 (27%)
Query: 26 RKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYK-------WNLKAHLKM 78
+ +S DH SNI+ H +Q + + L ++ Y N K
Sbjct: 207 YQIDPNWTSRS-DHSSNIKLR---IHSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNA 261
Query: 79 HKGPKIFTCAQC-------DK--AFSLKSNLSKHVR--------HHMENVKQCKICLEIF 121
F C K L + + H+ E L+
Sbjct: 262 ------FN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 122 EDD---EVLEEH----------VKSHQNR--RFKCPCCERIFTSETRMRNHIDMKHADEN 166
D EVL + ++ +K C+++ T + + +++ E
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTIIESSLNVLEPAE- 370
Query: 167 LFKCKKCLKVFSDEIKF----------------------HLHGRAHAKFYRCSECEKRFA 204
K L VF LH + + E +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE---KQPKESTIS 427
Query: 205 TEDI---MRQHFRNY---HNK-EDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLM 257
I ++ N H D Y +DS + +D +F+ ++ +H
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHL--- 481
Query: 258 FPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCR-YCQR 316
KN+ + E + F F ++ +E+ K N + ++L TLQ+ + Y
Sbjct: 482 ----KNIEHPERMTLFRMVFLDFRF-LEQ---KIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 317 MFRNEDKLTAHELSHTMEKTLYKC---LYCHK 345
+ N+ K L + + L K L C K
Sbjct: 534 ICDNDPKY--ERLVNAILDFLPKIEENLICSK 563
Score = 42.1 bits (98), Expect = 6e-04
Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 36/149 (24%)
Query: 488 HKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDL 547
H H+D ET E D++ + F+++
Sbjct: 3 HHHHMD-----FETGEHQYQY---------KDILSVFE---------------DAFVDNF 33
Query: 548 KLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQ------VEKNLNNMYNL 601
K + ++ + + + + L + + S Q+ VE+ L Y
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 602 LTTHIEYHHSQNNIESES-NQSSGFMYND 629
L + I+ Q ++ + + +YND
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Score = 41.0 bits (95), Expect = 0.002
Identities = 61/452 (13%), Positives = 144/452 (31%), Gaps = 133/452 (29%)
Query: 327 HELSHTMEKTLYKCLYCHK----VFKKS--TSFD-KHMEHHNRNVLHKCHLCTKAYPSEK 379
H H M+ + Y +K VF+ + +FD K ++ +++L S++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-----------SKE 49
Query: 380 NLDRHLLT--HNVRRSFRC--------KSCGRRFESEELLIVHQVIHERKFHKCTQCEES 429
+D H++ V + R + ++F E L I ++ + + Q S
Sbjct: 50 EID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PS 106
Query: 430 FKNKKHLKQHLLAHEKVKVFHCPKCPKLF--RHESHLQNHVIVHDESEVHKCLYCFK--- 484
+ +++Q + +VF K R + +L+ + + L +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVF-----AKYNVSRLQPYLK----------LRQALLELRPAK 151
Query: 485 -VFVH------KAHL------DKHLILHETSEMH-----NCDFCHLTFTTDNDLIRHMRS 526
V + K + + ++ NC+ L+ +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 527 HEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIE 586
+ + H+ +I + I+ ++ + + L +K Y + LL++ N++
Sbjct: 212 NWTSRSDHSSNI--KLRIHSIQAE-----LRRLLK----------SKPYENCLLVLLNVQ 254
Query: 587 SSQQVEKNLNNMYNLLTTH----IEYHHSQNNIESESNQSSGFMYNDET----SSYSHIK 638
+++ + LLTT ++ + + S + DE Y +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 639 QED---DSCDTY-------------MDDTTENSNTY------------LKQETPDN---- 666
+D + T T +N L P
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 667 -EDI----DTTPVPESSDILAINYEDKVKDEP 693
+ + + +P +L++ + D +K +
Sbjct: 375 FDRLSVFPPSAHIPT--ILLSLIWFDVIKSDV 404
Score = 38.3 bits (88), Expect = 0.009
Identities = 32/235 (13%), Positives = 62/235 (26%), Gaps = 64/235 (27%)
Query: 16 IPAQ--------GKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYR 67
IP ++ S K + + + + K KL
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKVKLE----- 440
Query: 68 YKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSK---------HVRHHMENVKQC-KIC 117
N A +H+ I K F +L H+ HH++N++ ++
Sbjct: 441 ---NEYA---LHR--SIVDHYNIPKTFD-SDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 118 L--EIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSET-----RMRNHIDMKHADENLFKC 170
L +F D LE+ + R T + +I
Sbjct: 492 LFRMVFLDFRFLEQKI-----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---- 542
Query: 171 KKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNK--EDAY 223
++ + + F L + D++R E+A+
Sbjct: 543 ----RLVNAILDF-LP-KIEENLICSKYT-------DLLRIALMAEDEAIFEEAH 584
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 47.8 bits (115), Expect = 2e-07
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 39 HKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKS 98
+ R +++YKC C + + + +L H + H G K + C +C KAF +S
Sbjct: 2 SSGSSGRSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 99 NLSKHVRHH 107
+L H R H
Sbjct: 61 HLIGHHRVH 69
Score = 45.9 bits (110), Expect = 1e-06
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 409 LIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNH 467
+ ER+ +KC +C +SF + L +H H K + C +C K F SHL H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 468 VIVH 471
VH
Sbjct: 66 HRVH 69
Score = 37.4 bits (88), Expect = 0.001
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 435 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 494
+ + + + C +C K F H S L H H + +KC C K F+ ++HL
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 495 HLILH 499
H +H
Sbjct: 65 HHRVH 69
Score = 34.7 bits (81), Expect = 0.010
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 324 LTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDR 383
E + YKC C K F S+ KH H +KC C KA+ +L
Sbjct: 6 SGRSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 384 HLLTH 388
H H
Sbjct: 65 HHRVH 69
Score = 32.8 bits (76), Expect = 0.043
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
KC C + F + L+ H +HT EK YKC C K F + + H
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH 65
Score = 32.0 bits (74), Expect = 0.070
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRF 203
+ +KC +C K FS H R H K Y+C EC K F
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 31.3 bits (72), Expect = 0.15
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
+ Y+C EC K F+ + +H R H E Y C+ C +F +S L+ H
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 27.8 bits (63), Expect = 2.5
Identities = 21/120 (17%), Positives = 31/120 (25%), Gaps = 55/120 (45%)
Query: 71 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 130
+ + + + C +C K+FS S+LSK
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSK---------------------------- 36
Query: 131 VKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 190
H+ R H E +KC +C K F H R H
Sbjct: 37 ---HR----------RT--------------HTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 26.6 bits (60), Expect = 6.7
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNHCFLMFPDEKNLRNH 267
+ Y C+ C SF S L H H G PY C+ C F +L H
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 47.1 bits (113), Expect = 3e-07
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
K Y C C + + L H ++H G K + C +C KAFS S L H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 44.0 bits (105), Expect = 4e-06
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 409 LIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNH 467
IH K + C +C ++F L QH H K + C +C K F S L NH
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 468 VIVH 471
+H
Sbjct: 62 QRIH 65
Score = 40.1 bits (95), Expect = 1e-04
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 72 LKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEH 130
+H G K + C +C KAFS S L +H R H E +C C + F + L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 131 VKSH 134
+ H
Sbjct: 62 QRIH 65
Score = 39.8 bits (94), Expect = 1e-04
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 381 LDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNKKHLKQH 439
H+ + + C CG+ F +L+ HQ +H K +KC +C ++F L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 36.3 bits (85), Expect = 0.002
Identities = 20/64 (31%), Positives = 26/64 (40%)
Query: 436 LKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH 495
H K + C +C K F S L H VH + +KCL C K F + L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 496 LILH 499
+H
Sbjct: 62 QRIH 65
Score = 35.1 bits (82), Expect = 0.006
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 324 LTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDR 383
+ H+ EK Y C+ C K F +S+ +H H +KC C KA+ L
Sbjct: 2 SSGSSGIHSGEKP-YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 384 HLLTH 388
H H
Sbjct: 61 HQRIH 65
Score = 34.0 bits (79), Expect = 0.016
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFR 214
H+ E + C +C K FS H R H K Y+C EC K F+ + H R
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 33.6 bits (78), Expect = 0.022
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
C C + F L H+ HT EK YKCL C K F +++ H
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
Score = 29.4 bits (67), Expect = 0.58
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
+ C+ C K F + L +H +H + + C C F+ ++ LI H R H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 27.8 bits (63), Expect = 2.1
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNHCFLMFPDEKNLRNHE 268
H+ E Y C C +F S LV H H G PY C C F L NH+
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 48.0 bits (113), Expect = 5e-07
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Query: 73 KAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVK 132
+ + +++ C C+ S H R N C C F E+ +EH
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-RNAAVCPYCSLRFFSPELKQEHES 63
Query: 133 SHQNRRFKCPCCERIFTSETRMRNHIDMKHADENL 167
+ ++ C C R F S + H H N+
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNM 98
Score = 45.3 bits (106), Expect = 3e-06
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 365 LHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCT 424
+++C LC S H R + C C RF S EL H+ E K C
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 425 QCEESFKNKKHLKQH 439
+C +FK+ + +H
Sbjct: 74 ECMRTFKSSFSIWRH 88
Score = 41.0 bits (95), Expect = 1e-04
Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 164 DENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAY 223
++ +++C+ C S ++ H R C C RF + ++ ++H +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES--KCEYKKL 70
Query: 224 VCNYCYDSFETKSTLVDH 241
C C +F++ ++ H
Sbjct: 71 TCLECMRTFKSSFSIWRH 88
Score = 41.0 bits (95), Expect = 1e-04
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 220 EDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSC---FTCP 276
++ Y C C + H N +C +C L F + + HE TC
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 277 FCQRKYKIEKHLEKHIES 294
C R +K + +H
Sbjct: 74 ECMRTFKSSFSIWRHQVE 91
Score = 39.5 bits (91), Expect = 4e-04
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 54 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQ 113
++ Y+C+LC +H ++ + C C F +H
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLT 71
Query: 114 CKICLEIFEDDEVLEEHVKSHQNRRFKCPC 143
C C+ F+ + H N+ P
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVHNQNNMAPT 101
Score = 39.1 bits (90), Expect = 6e-04
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 127 LEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLH 186
++C C +S +H + N C C F H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSH---ERLCRNAAVCPYCSLRFFSPELKQEH 61
Query: 187 GRAHA-KFYRCSECEKRFATEDIMRQHFRNYHNKE 220
K C EC + F + + +H HN+
Sbjct: 62 ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 38.7 bits (89), Expect = 8e-04
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 273 FTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHT 332
+ C C K H C + C YC F + + HE
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLC----------RNAAVCPYCSLRFFSPELKQEHESKCE 66
Query: 333 MEKTLYKCLYCHKVFKKSTSFDKH-MEHHNRNVL 365
+K CL C + FK S S +H +E HN+N +
Sbjct: 67 YKK--LTCLECMRTFKSSFSIWRHQVEVHNQNNM 98
Score = 38.7 bits (89), Expect = 8e-04
Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 391 RRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFH 450
+ ++C+ C + S H+ + C C F + + ++H + + K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAA-VCPYCSLRFFSPELKQEHE-SKCEYKKLT 71
Query: 451 CPKCPKLFRHESHLQNHVI-VHDE 473
C +C + F+ + H + VH++
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 38.0 bits (87), Expect = 0.001
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 412 HQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ ++ ++C C + H V CP C F Q H
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHESKC 65
Query: 472 DESEVHKCLYCFKVFVHKAHLDKH 495
+ ++ CL C + F + +H
Sbjct: 66 EYKKL-TCLECMRTFKSSFSIWRH 88
Score = 37.6 bits (86), Expect = 0.002
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 330 SHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHN 389
S K +Y+C C+ H + C C+ + S + H
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHESKCE 66
Query: 390 VRRSFRCKSCGRRFESEELLIVHQV 414
++ C C R F+S + HQV
Sbjct: 67 YKK-LTCLECMRTFKSSFSIWRHQV 90
Score = 36.4 bits (83), Expect = 0.004
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 306 KTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVL 365
K + +CR C + + +HE + C YC F +H L
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEHESKCEYKKL 70
Query: 366 HKCHLCTKAYPSEKNLDRH 384
C C + + S ++ RH
Sbjct: 71 -TCLECMRTFKSSFSIWRH 88
Score = 35.3 bits (80), Expect = 0.011
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 500 ETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAH-IKIIHN 558
E E++ C C+ ++ + H R C C +F + + H K +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEHESKCEYK 68
Query: 559 LFTCIHCGDTLNNAKDYASHLLIIHN 584
TC+ C T ++ H + +HN
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 35.3 bits (80), Expect = 0.012
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Query: 98 SNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNH 157
S S + V QC++C H + +N CP C F S + H
Sbjct: 3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN-AAVCPYCSLRFFSPELKQEH 61
Query: 158 IDMKHADENLFKCKKCLKVFSDEIKFHLH 186
+ C +C++ F H
Sbjct: 62 --ESKCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 34.1 bits (77), Expect = 0.027
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 248 PYMCNHCFLMFPDEKNLRNHE--CTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVL 305
Y C C +HE C + CP+C ++ + ++H C T
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLT---- 71
Query: 306 KTLQKCRYCQRMFRNEDKLTAHELS 330
C C R F++ + H++
Sbjct: 72 -----CLECMRTFKSSFSIWRHQVE 91
Score = 34.1 bits (77), Expect = 0.030
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
+ ++C +C H + C C+ + + H + K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQEH-ESKCEYKK 69
Query: 85 FTCAQCDKAFSLKSNLSKHV 104
TC +C + F ++ +H
Sbjct: 70 LTCLECMRTFKSSFSIWRHQ 89
Score = 29.1 bits (64), Expect = 1.9
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 526 SHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCG 566
S E + C +C K + L+ +H ++ N C +C
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCS 49
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 45.6 bits (109), Expect = 8e-07
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHV-RHH 107
+ + C++C R + + +LK H + H K + C C++AF+ + L +H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 421 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNH 467
C C +F ++HLK+H +H K + C C + F L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 38.6 bits (91), Expect = 2e-04
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 392 RSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQH 439
RSF C+ C R F +E L H H E+ + C C +F + L +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPY-PCGLCNRAFTRRDLLIRH 49
Score = 34.4 bits (80), Expect = 0.008
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH 495
+ F C C + F + HL+ H H + + C C + F + L +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 33.6 bits (78), Expect = 0.013
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHM 357
C C R F ++ L H SHT EK Y C C++ F + +H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHA 50
Score = 33.2 bits (77), Expect = 0.020
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 168 FKCKKCLKVFSDEIKFHL--HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKE 220
F C+ C + F+ + HL H R+H K Y C C + F D++ +H + H+
Sbjct: 3 FVCEVCTRAFAR--QEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 33.2 bits (77), Expect = 0.021
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVH-QVIH 416
C +CT+A+ +++L RH +H + + C C R F +LLI H Q IH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 32.1 bits (74), Expect = 0.049
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
+ C C + FA ++ +++H+R+ H E Y C C +F + L+ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 29.4 bits (67), Expect = 0.44
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 505 HNCDFCHLTFTTDNDLIRHMRSHEEYHTK---HTCDICGEKFINDLKLKAHIKIIH 557
C+ C F L RH RS HT + C +C F L H + IH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS----HTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 27.8 bits (63), Expect = 1.4
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATH 51
E+ + C +C ++F + + RH H
Sbjct: 28 EKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 25.5 bits (57), Expect = 9.6
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 338 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRH 384
+ C C + F + +H H + C LC +A+ L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 44.9 bits (107), Expect = 2e-06
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 30 CEMCPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTC 87
E C K+F + ++ H +H Q Y+C C + + LK H K+H G
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 88 AQCDKAFSLKSNLSKHVRH 106
C + KHV
Sbjct: 65 DSCSFVGKTWTLYLKHVAE 83
Score = 42.6 bits (101), Expect = 2e-05
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 421 HKCT--QCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEV 476
+ C C ++FK LK H +H + + C C K F S L+ H VH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 477 HKCLYCFKVFVHKAHLDKH 495
K C V KH
Sbjct: 62 KKDDSCSFVGKTWTLYLKH 80
Score = 39.9 bits (94), Expect = 1e-04
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 396 CKSCGRRFESEELLIVHQVIH--ERKFHKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHC 451
++CG+ F+ L VHQ H + + +C C++ F LK+H H
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPY-ECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 452 PKCPKLFRHESHLQNHV 468
C + + + HV
Sbjct: 65 DSCSFVGKTWTLYLKHV 81
Score = 36.1 bits (84), Expect = 0.004
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 337 LYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCH--LCTKAYPSEKNLDRHLLTHNVRR 392
+Y C + C K FKK H H + + ++C C K + L RH H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 393 SFRCKSCGRRFE-SEELLIVHQVIH 416
+ SC + L H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 35.3 bits (82), Expect = 0.006
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 310 KCRY--CQRMFRNEDKLTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVL 365
C + C + F+ ++L H+ SHT + Y+C + C K F + +H + H
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQL-PYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 366 HKCHLCTKAYPSEKNLDRH 384
K C+ + +H
Sbjct: 62 KKDDSCSFVGKTWTLYLKH 80
Score = 33.7 bits (78), Expect = 0.025
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Query: 476 VHKCLY--CFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHMRSHEEY 530
++ C + C K F L H H T ++ + C C F+ + L RH + H Y
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Query: 531 HTKHTCDICGEKFINDLKLKAHIKIIH 557
D C H+ H
Sbjct: 60 -PCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 32.2 bits (74), Expect = 0.095
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 139 FKCPC--CERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAH--AK 192
+ C C + F +++ H H + ++C C K FS + H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 193 FYRCSECEKRFATEDIMRQHFRNYH 217
+ C T + +H H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 31.4 bits (72), Expect = 0.17
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 167 LFKC--KKCLKVFSDEIKFHLHGRAHA--KFYRCSE--CEKRFATEDIMRQHFRNYHNKE 220
++ C + C K F + +H +H Y C C+KRF+ +++H + H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGY 59
Query: 221 DAYVCNYCYDSFETKSTLVDH 241
+ C +T + + H
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKH 80
Score = 29.9 bits (68), Expect = 0.58
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 86 TCAQCDKAFSLKSNLSKHVRHHM-ENVKQCK--ICLEIFEDDEVLEEHVKSHQ-NRRFKC 141
C KAF + L H H + +C C + F L+ H K H K
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 142 PCCERIFTSETRMRNHIDMKH 162
C + + T H+ H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 43.9 bits (103), Expect = 3e-06
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 56 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
KY C+ C + LK H++ H + + C C+ +F K NL+KH++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 39.7 bits (92), Expect = 1e-04
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 27 KFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
K+ CE C S +++H+ TH + Y C C ++ K NL H+K K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 35.1 bits (80), Expect = 0.005
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHH 245
Y C EC R ++++H R H Y C YC SF+TK L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 34.7 bits (79), Expect = 0.007
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 421 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ C +C K LK+H+ H V+ +HC C F+ + +L H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 33.5 bits (76), Expect = 0.015
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 394 FRCKSCGRRFESEELLIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVK 447
+ C+ CG R + +L H H + + CT C SFK K +L +H+ + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 33.5 bits (76), Expect = 0.016
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 338 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTH 388
Y C C KK + KH+ H + C C ++ ++ NL +H+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 32.8 bits (74), Expect = 0.028
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ C C L +H+ TH R + C C F+++ L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 32.8 bits (74), Expect = 0.033
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
+ C C + L KH+ H ++C +C+ +F T +L +HM+S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 32.4 bits (73), Expect = 0.044
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 449 FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 499
+ C +C + S L+ H+ H + + C YC F K +L KH+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 27.8 bits (61), Expect = 1.7
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 168 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNY 216
+ C++C H R H + Y C+ C F T+ + +H ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 43.8 bits (102), Expect = 2e-05
Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 2/120 (1%)
Query: 321 EDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKN 380
E + + + + K+ + R ++ + E +
Sbjct: 3 ESDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTL-IHNPQLLDESS 61
Query: 381 LDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHL 440
LL F C C F S L H E C C++ F + H+
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK-VCPVCKKEFTSTDSALDHV 120
Score = 42.6 bits (99), Expect = 5e-05
Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 3/123 (2%)
Query: 96 LKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMR 155
+ S K++ +H + LE + L K K E+
Sbjct: 6 VDSGSKKYLSNH--KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYL 63
Query: 156 NHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRN 215
+ + + F C CL FS + H R C C+K F + D H
Sbjct: 64 YRL-LASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCK 122
Query: 216 YHN 218
HN
Sbjct: 123 KHN 125
Score = 42.6 bits (99), Expect = 5e-05
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 7/120 (5%)
Query: 354 DKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRC-----KSCGRRFESEEL 408
+ ++ ++ L E+ H LT +R R + +
Sbjct: 3 ESDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSY 62
Query: 409 LIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHV 468
L C C F + LKQH+ E KV CP C K F +HV
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHV 120
Score = 40.3 bits (93), Expect = 3e-04
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 7/105 (6%)
Query: 397 KSCGRRFESEELLIVHQVIHERKFH-----KCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
K EEL HQ+ E+K K ++ LLA + + F C
Sbjct: 18 KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVC 77
Query: 452 PKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHL 496
P C F L+ H+ + ++V C C K F H+
Sbjct: 78 PLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHV 120
Score = 39.9 bits (92), Expect = 4e-04
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSH 134
L K F C C FS +L +H+R+ E+ K C +C + F + +HV
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKK 123
Query: 135 QNR 137
N
Sbjct: 124 HNI 126
Score = 38.8 bits (89), Expect = 0.001
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 14 QQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLK 73
Q P Q + I+ P+ D S + R +A+ ++ C LC + +LK
Sbjct: 34 QLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKA--ISQFVCPLCLMPFSSSVSLK 91
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 105
H++ + K C C K F+ + HV
Sbjct: 92 QHIRYTEHTK--VCPVCKKEFTSTDSALDHVC 121
Score = 37.2 bits (85), Expect = 0.004
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 6/109 (5%)
Query: 419 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHK 478
H + + + ++ L+ + H P+ ES ++
Sbjct: 21 FIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ----LLDESSYLYRLLASKAISQFV 76
Query: 479 CLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
C C F L +H+ E +++ C C FT+ + + H+
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKK 123
Score = 36.8 bits (84), Expect = 0.005
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 1/110 (0%)
Query: 54 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQ 113
K + + L K + T + S L + + +
Sbjct: 17 HKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFV 76
Query: 114 CKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHA 163
C +CL F L++H++ + CP C++ FTS +H+ KH
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTE-HTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 34.5 bits (78), Expect = 0.034
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 223 YVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTC 275
+VC C F + +L H + + +C C F + +H C C
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKHNIC 127
Score = 34.5 bits (78), Expect = 0.034
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 244 HHGNPYMCNHCFLMFPDEKNLRNH--ECTSCFTCPFCQRKYKIEKHLEKHIES 294
+ ++C C + F +L+ H CP C++++ H+
Sbjct: 70 KAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCK 122
Score = 33.8 bits (76), Expect = 0.066
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 311 CRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHME 358
C C F + L H K C C K F + S H+
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTKV---CPVCKKEFTSTDSALDHVC 121
Score = 33.0 bits (74), Expect = 0.094
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 3/100 (3%)
Query: 489 KAHLDKHLILHETSEMHNCD---FCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFIN 545
+ H + E + H D + + ++ C +C F +
Sbjct: 27 EELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSS 86
Query: 546 DLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNI 585
+ LK HI+ + C C + H+ HNI
Sbjct: 87 SVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 32.6 bits (73), Expect = 0.14
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 184 HLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFF 243
L + C C F++ ++QH R E VC C F + + +DH
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIR---YTEHTKVCPVCKKEFTSTDSALDHVC 121
Query: 244 HHGN 247
N
Sbjct: 122 KKHN 125
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 42.0 bits (99), Expect = 2e-05
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 50 THDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVR 105
+ + C C + Y +LKAH + H G K F+C+ C++ F+ LS+H R
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Query: 106 HH 107
H
Sbjct: 71 TH 72
Score = 37.0 bits (86), Expect = 0.001
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 462 SHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSEMHNCDF--CHLTFTTD 517
S I H C + C K + +HL H H + +C + C F
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 518 NDLIRHMRSH 527
++L RH R+H
Sbjct: 63 DELSRHRRTH 72
Score = 33.5 bits (77), Expect = 0.020
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 350 STSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRC--KSCGRRFES 405
S+ +R H C C K Y +L H TH + F C K C RRF
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 406 EELLIVHQVIH 416
+ L H+ H
Sbjct: 62 SDELSRHRRTH 72
Score = 30.4 bits (69), Expect = 0.29
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 418 RKFHKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVH 471
+ H C+ C +++ HLK H H K F C C + F L H H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 29.3 bits (66), Expect = 0.65
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 72 LKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHH 107
+ C C K + S+L H R H
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH 42
Score = 26.6 bits (59), Expect = 7.1
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 310 KCRY--CQRMFRNEDKLTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHH 360
C + C + + L AH +HT EK + C + C + F +S +H H
Sbjct: 19 ICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRHRRTH 72
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 41.9 bits (99), Expect = 3e-05
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 39 HKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSL 96
H N + + Y C + C R + L H+++H G K F C C + FS
Sbjct: 4 HPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61
Query: 97 KSNLSKHVRHH 107
+L+ H+R H
Sbjct: 62 SDHLTTHIRTH 72
Score = 38.4 bits (90), Expect = 4e-04
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 409 LIVHQVIHERKFHKCT--QCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQN 466
L+ + V R + C C+ F L +H+ H K F C C + F HL
Sbjct: 9 LLNYVVPKMRPY-ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 467 HVIVH 471
H+ H
Sbjct: 68 HIRTH 72
Score = 35.7 bits (83), Expect = 0.003
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 79
R + C E C + F + RH+ H QK ++C++C R + +L H++ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.0 bits (81), Expect = 0.007
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 435 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 494
+L +++ + C + F L H+ +H + +C C + F HL
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 495 HLILH 499
H+ H
Sbjct: 68 HIRTH 72
Score = 34.2 bits (79), Expect = 0.012
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
C R F D+LT H HT +K ++C C + F +S H+ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTH 72
Score = 31.9 bits (73), Expect = 0.089
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 71 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH-MENVKQCKICLEIFEDDEVLEE 129
NL ++ P CD+ FS L++H+R H + QC+IC+ F + L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 130 HVKSH 134
H+++H
Sbjct: 68 HIRTH 72
Score = 29.6 bits (67), Expect = 0.56
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 491 HLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLK 550
+L +++ + C F+ ++L RH+R H C IC F L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLT 66
Query: 551 AHIKI 555
HI+
Sbjct: 67 THIRT 71
Score = 29.2 bits (66), Expect = 0.66
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 462 SHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLI 521
++L N+V+ C + F L +H+ +H + C C F+ + L
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 522 RHMRSH 527
H+R+H
Sbjct: 67 THIRTH 72
Score = 28.8 bits (65), Expect = 1.1
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 168 FKC--KKCLKVF--SDEIKFHLHGRAH--AKFYRCSECEKRFATEDIMRQHFR 214
+ C + C + F SDE+ H+ R H K ++C C + F+ D + H R
Sbjct: 20 YACPVESCDRRFSRSDELTRHI--RIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 28.8 bits (65), Expect = 1.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 371 CTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
C + + L RH+ H ++ F+C+ C R F + L H H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 39.5 bits (93), Expect = 7e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C QC KAFS K +L H+R H
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 28.3 bits (64), Expect = 0.80
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + +RC CG+ F + LIVH +H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 27.9 bits (63), Expect = 1.1
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S EK Y+C C K F + S H+ H
Sbjct: 1 GSSGSSGGEKP-YRCDQCGKAFSQKGSLIVHIRVH 34
Score = 26.8 bits (60), Expect = 2.8
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAH 443
K ++C QC ++F K L H+ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 26.0 bits (58), Expect = 5.6
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFT 86
+ +K Y+C C + + K +L H+++H G +
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K F C +C FS +L KH+R H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 31.8 bits (73), Expect = 0.044
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNR 362
+ S T EK ++C C F S S KH+ H R
Sbjct: 2 SSGSSGTGEKP-FQCKECGMNFSWSCSLFKHLRSHER 37
Score = 30.6 bits (70), Expect = 0.11
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ F+C+ C +F ++ +H+ +H+
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHL-RSHERTDPSGP 43
Score = 28.7 bits (65), Expect = 0.57
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 89
+ +K ++CK C + + +L HL+ H+ +
Sbjct: 6 SGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 26.4 bits (59), Expect = 4.0
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 225
G + K ++C EC F+ + +H R+ H + D
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDPSGP 43
Score = 25.6 bits (57), Expect = 6.8
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER 418
+ + F+CK CG F L H HER
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + CA+C KAF+++SNL KH + H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ + C C K+F +SN+ +H H QK
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQ-KIHTKQKPSGP 43
Score = 27.1 bits (61), Expect = 2.2
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C CG+ F LI HQ IH
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 26.3 bits (59), Expect = 4.6
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK Y C C K F ++ KH
Sbjct: 2 SSGSSGTGEKP-YICAECGKAFTIRSNLIKH 31
Score = 25.9 bits (58), Expect = 5.0
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y C C + + + NL H K+H K
Sbjct: 6 SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 25.9 bits (58), Expect = 5.6
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
E Y+C C +F +S L+ H H P +
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 2e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G F C++C K F+ K+NL H + H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 29.4 bits (67), Expect = 0.37
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E F C C K F HK+N+ H H ++
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQ-KIHTGERPSGP 43
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ F C CG+ F + LI+HQ IH
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 26.3 bits (59), Expect = 3.9
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + CSEC K F + + H + H E +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPS 44
Score = 25.9 bits (58), Expect = 5.7
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ + + C C +++ +K NL H K+H G +
Sbjct: 6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 25.5 bits (57), Expect = 7.3
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T E + C C KVF T+ H
Sbjct: 2 SSGSSGTGENP-FICSECGKVFTHKTNLIIH 31
Score = 25.5 bits (57), Expect = 8.3
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
EN F C +C KVF+ + +H + H + S
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C+ C KAF+ KS L H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 28.2 bits (64), Expect = 0.89
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+CS+C K F + + H + H E +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGPS 44
Score = 27.9 bits (63), Expect = 1.0
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K+F KS + H +H ++
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQ-QSHTGERHSGP 43
Score = 26.7 bits (60), Expect = 2.6
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F + L +HQ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 25.9 bits (58), Expect = 5.9
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC C + + K L H + H G +
Sbjct: 6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 25.5 bits (57), Expect = 7.1
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K +KC+ C ++F K L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 38.2 bits (90), Expect = 2e-04
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C C F L H+R H
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 32.5 bits (75), Expect = 0.023
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHM 47
E+ + CE+C F H ++ H+
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHL 31
Score = 32.1 bits (74), Expect = 0.033
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 48 AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFT 86
+ + +K Y C++C +R+ LK+HL++H G +
Sbjct: 3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 30.9 bits (71), Expect = 0.079
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S EK Y C C F+ + H+ H
Sbjct: 1 GSSGSSGGEKP-YPCEICGTRFRHLQTLKSHLRIH 34
Score = 28.2 bits (64), Expect = 0.85
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVH 471
K + C C FRH L++H+ +H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 26.3 bits (59), Expect = 4.2
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C+ CG RF + L H IH
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 25.9 bits (58), Expect = 5.5
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 194 YRCSECEKRFATEDIMRQHFR 214
Y C C RF ++ H R
Sbjct: 12 YPCEICGTRFRHLQTLKSHLR 32
Score = 25.2 bits (56), Expect = 8.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 421 HKCTQCEESFKNKKHLKQHLLAH 443
+ C C F++ + LK HL H
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K F C C K+F K NL H R H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 29.0 bits (66), Expect = 0.45
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
++ F+C C KSF K N+ H H +K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQ-RIHTGEKSGPS 43
Score = 28.7 bits (65), Expect = 0.62
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ QK ++C C + +R K NL H ++H G K
Sbjct: 6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 27.9 bits (63), Expect = 1.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ ++ F C CG+ F ++ L+ HQ IH
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 26.3 bits (59), Expect = 3.4
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
+K +CT C +SF+ K +L H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 25.6 bits (57), Expect = 8.3
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K + C+ C K F + + H R H E + +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPSS 44
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 38.9 bits (90), Expect = 3e-04
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 71 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 130
+ K+H G + C++C F +S LS+ C+ C + + L +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP------MCEKCRKDSCQEAALNKD 58
Query: 131 VKSH 134
+
Sbjct: 59 EGNE 62
Score = 34.3 bits (78), Expect = 0.012
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 41 SNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNL 100
+ + H + KC C ++ + L K C +C K ++ L
Sbjct: 4 GSSGKRQK-IHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAAL 55
Query: 101 SKHVRHHME 109
+K +
Sbjct: 56 NKDEGNESG 64
Score = 33.9 bits (77), Expect = 0.018
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 349 KSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEEL 408
S S K + H + KC C + T + R++ C+ C + E
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAA 54
Query: 409 LIVHQVIH 416
L +
Sbjct: 55 LNKDEGNE 62
Score = 32.3 bits (73), Expect = 0.071
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 435 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 494
+ H + C KC +F S L + C C K +A L+K
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 495 HLILH 499
Sbjct: 58 DEGNE 62
Score = 31.2 bits (70), Expect = 0.13
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 462 SHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLI 521
+H KC C +F+ ++ L + + C+ C + L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALN 56
Query: 522 RHMRSH 527
+ +
Sbjct: 57 KDEGNE 62
Score = 31.2 bits (70), Expect = 0.14
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 377 SEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHL 436
S + + H RS +C CG F L RK C +C + + L
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLS------RRKTPMCEKCRKDSCQEAAL 55
Query: 437 KQHLLAH 443
+
Sbjct: 56 NKDEGNE 62
Score = 30.8 bits (69), Expect = 0.20
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
+R KC C F +S + R K C+ C + + L G K
Sbjct: 16 DRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAALNKDEGNESGKK 66
Score = 28.1 bits (62), Expect = 2.2
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKED 221
H + KC KC +F + K C +C K E + + N + +
Sbjct: 13 HLGDRSQKCSKCGIIFI-----RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGN-ESGKK 66
Query: 222 AY 223
Sbjct: 67 TS 68
Score = 26.9 bits (59), Expect = 4.4
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 309 QKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
QKC C +F + + KT C C K + + +K +
Sbjct: 19 QKCSKCGIIF-------IRRSTLSRRKT-PMCEKCRKDSCQEAALNKDEGNE 62
Score = 26.2 bits (57), Expect = 8.2
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHE 268
H + + C+ C F +STL MC C E L E
Sbjct: 13 HLGDRSQKCSKCGIIFIRRSTLSRR-----KTPMCEKCRKDSCQEAALNKDE 59
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ K + C C K ++ + NL H R H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 29.4 bits (67), Expect = 0.32
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KCE C K ++ + N+ H H +K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQ-RVHMGEKTSGP 43
Score = 27.8 bits (63), Expect = 1.2
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S ++EK YKC C K + + + D H
Sbjct: 2 SSGSSGSVEKP-YKCEDCGKGYNRRLNLDMH 31
Score = 27.1 bits (61), Expect = 1.9
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ +V + ++C+ CG+ + L +HQ +H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 26.3 bits (59), Expect = 4.8
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
+ E +KC+ C K ++ + +H R H K S
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 25.9 bits (58), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ ++K YKC+ C + Y + NL H ++H G K
Sbjct: 6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 25.5 bits (57), Expect = 8.5
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 412 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 439
K +KC C + + + +L H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C+QC K FSLKS L H R H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 29.4 bits (67), Expect = 0.33
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C C + F + LIVHQ H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 27.9 bits (63), Expect = 1.3
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
+ + C C K+F KS + H +H K
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQ-RSHTGVKPSGP 43
Score = 27.5 bits (62), Expect = 1.8
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y CS+C K F+ + + H R+ H +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPSGPS 44
Score = 25.6 bits (57), Expect = 7.6
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ K Y C CA+ + K L H + H G K
Sbjct: 6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 25.6 bits (57), Expect = 8.1
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K + C+QC ++F K L H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 38.3 bits (90), Expect = 3e-04
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 49 ATHDLQKKYKCKLCARMYRYKWNLKAHLKM-HKGPKIFTCAQCDKAFS 95
++ + K Y C+ C + + +L H+K H + C S
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 37.6 bits (88), Expect = 6e-04
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC 62
+ + C+ C K F ++ H+ H ++ +KC++
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 34.9 bits (81), Expect = 0.004
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 232
G + + K Y C C K F+ D + H + H E + C
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 34.1 bits (79), Expect = 0.009
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR--HHMENVKQCKIC 117
+ K + C C K FS +L+ H++ H E +C++
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 30.6 bits (70), Expect = 0.16
Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 443 HEKVKVFHCPKCPKLFRHESHLQNHV-IVHDESEVHKCLYCFKVF 486
K + C C K F HL H+ VH HKC
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 30.6 bits (70), Expect = 0.17
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEH-HNRNVLHKCHLCTKAYPS 377
+ S ++ K Y C C K F + + H++ H HKC + S
Sbjct: 2 SSGSSGSVGKP-YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 30.2 bits (69), Expect = 0.18
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 387 THNVRRSFRCKSCGRRFESEELLIVH-QVIH--ERKFHKCTQCEESFKN 432
+ +V + + C+SCG+ F + L H + +H ER KC +
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPH-KCQVWVSGPSS 53
Score = 30.2 bits (69), Expect = 0.19
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 412 HQVIHER-KFHKCTQCEESFKNKKHLKQHL-LAHEKVKVFHCPKCPKLF 458
K + C C + F HL H+ H + C
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 29.1 bits (66), Expect = 0.45
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 139 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSD 179
+ C C + F+ + HI H E KC+ + S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 29.1 bits (66), Expect = 0.48
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRA-HA--KFYRCSECEKRFAT 205
+ + C+ C K FS + H + H + ++C ++
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 28.7 bits (65), Expect = 0.71
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 310 KCRYCQRMFRNEDKLTAHELS-HTMEKTLYKCLYCHKVF 347
C+ C + F D L H HT E+ +KC
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVWVSGP 51
Score = 26.4 bits (59), Expect = 4.5
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 366 HKCHLCTKAYPSEKNLDRHL-LTHNVRRSFRCKSCGRRFES 405
+ C C K + +L+ H+ H R +C+ S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 26.4 bits (59), Expect = 5.3
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDHF--FHHG-NPYMCNHC 254
+ Y+C C F L H H P+ C
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K++ C +C K+FS L KH R H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 27.5 bits (62), Expect = 1.4
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + CK CG+ F L+ H+ +H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 27.1 bits (61), Expect = 2.4
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ + C+ C KSF + +H H +K
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHE-RLHSGEKPSGP 43
Score = 26.3 bits (59), Expect = 3.6
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK LY C C K F ++ KH
Sbjct: 2 SSGSSGTGEK-LYNCKECGKSFSRAPCLLKH 31
Score = 26.0 bits (58), Expect = 5.5
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
E L+ CK+C K FS H R H+ K S
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 25.6 bits (57), Expect = 7.4
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y C EC K F+ + +H R H+ E +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGPS 44
Score = 25.6 bits (57), Expect = 7.9
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y CK C + + L H ++H G K
Sbjct: 6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.8 bits (89), Expect = 3e-04
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K F C++C KAF+ KSNL H R H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 29.8 bits (68), Expect = 0.27
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ F+C C K+F+ KSN+ H TH +K
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQ-RTHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.56
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + F C C + F ++ LIVHQ H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 25.5 bits (57), Expect = 8.7
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K ++C C + + K NL H + H G K
Sbjct: 6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + CA+C KAF+ +SNL H + H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 29.0 bits (66), Expect = 0.45
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ ++C C K+F +SN+ H H +K
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQ-KIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 2.7
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK Y+C C K F ++ H
Sbjct: 2 SSGSSGTGEKP-YRCAECGKAFTDRSNLFTH 31
Score = 26.7 bits (60), Expect = 3.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + +RC CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 25.9 bits (58), Expect = 6.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y+C C + + + NL H K+H G K
Sbjct: 6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 6.6
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K ++C +C ++F ++ +L H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C+ C K+F+ KS L H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 30.6 bits (70), Expect = 0.13
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C KSF KS +R H H ++
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQ-KCHTGERHSGP 43
Score = 27.9 bits (63), Expect = 1.3
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+CS+C K F + +R H + H E +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPS 44
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC C + + +K L+ H K H G +
Sbjct: 6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 26.3 bits (59), Expect = 3.5
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK YKC C K F + H
Sbjct: 2 SSGSSGTGEKP-YKCSDCGKSFTWKSRLRIH 31
Score = 26.3 bits (59), Expect = 4.4
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K +KC+ C +SF K L+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 26.0 bits (58), Expect = 5.9
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F + L +HQ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.5 bits (88), Expect = 4e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C KAF+ KSNL H R H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 28.6 bits (65), Expect = 0.62
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ ++C C K+F+ KSN+ H TH +
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQ-RTHTGESGPSS 43
Score = 27.1 bits (61), Expect = 2.2
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C C + F ++ L+VHQ H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 26.7 bits (60), Expect = 2.8
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y+C C + + K NL H + H G +
Sbjct: 6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 25.9 bits (58), Expect = 4.7
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 411 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K ++C +C+++F K +L H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 25.9 bits (58), Expect = 5.2
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 225
G + K Y C+EC+K F T+ + H R H E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HTGESGPSS 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K F C +C KAF+ KS LS H + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 27.1 bits (61), Expect = 1.9
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
+ F+C C K+F KS + H H +K
Sbjct: 10 GKHFECTECGKAFTRKSTLSMHQ-KIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.2
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K +CT+C ++F K L H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 27.1 bits (61), Expect = 2.2
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + F C CG+ F + L +HQ IH
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 26.3 bits (59), Expect = 3.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K + C+EC K F + + H + H E +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 4.5
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 89
+ K ++C C + + K L H K+H G K +
Sbjct: 6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 8.5
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
+ C C +F KSTL H H G P +
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 40.8 bits (95), Expect = 4e-04
Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 16/186 (8%)
Query: 195 RCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHC 254
+C C+K + ++ ++H ++C C + ++ + H Y C C
Sbjct: 9 KCGVCQKAVYFAEEVQCEGSSFHKSC--FLCMVCKKNLDSTT----VAVHGDEIY-CKSC 61
Query: 255 FLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
+ K + + + + H + + + C C
Sbjct: 62 YGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRC 121
Query: 315 QRMFRNEDKLTAHELS-HTMEKTLYKCLYCHKVFKKSTSFDKHME-----HHNRNVLHKC 368
+ +K+ S H K+ ++C C K + +T DK E + +N K
Sbjct: 122 GQAVYAAEKVIGAGKSWH---KSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKG 178
Query: 369 HLCTKA 374
+
Sbjct: 179 FGFGQG 184
Score = 29.2 bits (65), Expect = 3.3
Identities = 21/151 (13%), Positives = 36/151 (23%), Gaps = 21/151 (13%)
Query: 85 FTCAQCDKAFSLKSNLSKH-----VRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRF 139
F C C K + + + + S
Sbjct: 35 FLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG-------AGTLSTDKGES 87
Query: 140 KCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRA-HAKFYRCSE 198
E + N M C +C + K G++ H +RC++
Sbjct: 88 LGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAK 147
Query: 199 CEKRFATEDIMRQHFRNYHNKEDAYVCNYCY 229
C K + +K+ C CY
Sbjct: 148 CGKSLEST--------TLADKDGEIYCKGCY 170
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.5 bits (88), Expect = 5e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
K C +C + F+LKS+L++H R H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 28.3 bits (64), Expect = 0.80
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + +S +C CGR F + L HQ IH
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 27.1 bits (61), Expect = 2.2
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S + K+ ++C C + F + ++H H
Sbjct: 3 SGSSGSSTKS-HQCHECGRGFTLKSHLNQHQRIH 35
Score = 27.1 bits (61), Expect = 2.2
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K H+C +C F K HL QH
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 26.7 bits (60), Expect = 3.1
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ K ++C C R + K +L H ++H G K
Sbjct: 6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 9.4
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ K C +C + F +SHL H +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 5e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K+F C +C K F+ S+L+ H R H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 27.5 bits (62), Expect = 1.5
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
++ FKC C K+F S++ H H +K
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQ-RIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.2
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S +K L+KC C K F +S+S H H
Sbjct: 2 SSGSSGAGKK-LFKCNECKKTFTQSSSLTVHQRIH 35
Score = 27.1 bits (61), Expect = 2.3
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + A K ++C+EC+K F + H R H E +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.9
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 412 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 439
+K KC +C+++F L H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 26.7 bits (60), Expect = 3.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ ++ F+C C + F L VHQ IH
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 25.5 bits (57), Expect = 6.7
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K +KC C + + +L H ++H G K
Sbjct: 6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 7.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
A + LFKC +C K F+ +H R H K S
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 37.5 bits (88), Expect = 5e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G + C+QC+K+FS K L H R H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 30.2 bits (69), Expect = 0.17
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 49 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 89
++ YKC C + + K L H +MH K +
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.44
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
+KC C KSF K + H H +K
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQ-RMHTREKPSGP 43
Score = 28.3 bits (64), Expect = 0.73
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + A Y+CS+CEK F+ + + H R H +E +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGPS 44
Score = 28.3 bits (64), Expect = 0.74
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQ 425
+ ++C C + F + L+VHQ +H R K +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 27.9 bits (63), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
A N +KC +C K FS +++ +H R H K S
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 27.1 bits (61), Expect = 2.0
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
+KC+QCE+SF K L H H + K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 27.1 bits (61), Expect = 2.2
Identities = 8/31 (25%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S YKC C K F H
Sbjct: 2 SSGSSGAGVNP-YKCSQCEKSFSGKLRLLVH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C++C KAFS KS L H+R H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 29.4 bits (67), Expect = 0.29
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C CG+ F S+ LI+H H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 28.7 bits (65), Expect = 0.55
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ + C C K+F KS + HM TH +K
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHM-RTHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.4
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 225
G + A K Y CSEC K F+++ + H R H+ E
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPSGP 43
Score = 25.6 bits (57), Expect = 6.8
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
A E + C +C K FS + +H R H+ K S
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 5e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G + + C C KAF+ +SNL KH + H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 28.6 bits (65), Expect = 0.55
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
ER + C +C K+F +SN+ +H H +K
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQ-KIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.66
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ R + C CG+ F LI HQ IH
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 26.7 bits (60), Expect = 3.4
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
E Y+C C +F +S L+ H H G P +
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 26.3 bits (59), Expect = 4.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T E+ Y C C K F ++ KH + H
Sbjct: 2 SSGSSGTGERP-YICTVCGKAFTDRSNLIKHQKIH 35
Score = 25.9 bits (58), Expect = 5.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ ++ Y C +C + + + NL H K+H G K
Sbjct: 6 SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 6.5
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
+ + CT C ++F ++ +L +H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 25.5 bits (57), Expect = 8.2
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + Y C+ C K F + +H + H E +
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPS 44
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 36.9 bits (86), Expect = 5e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM 108
+ G K F C CD++FS +L+ H + HM
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 26.1 bits (58), Expect = 4.0
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 439 HLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+K F CP C + F HL H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.8 bits (57), Expect = 5.5
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
T K ++C C + F +S H + H
Sbjct: 2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKRH 34
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 37.3 bits (87), Expect = 5e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G + C QC K+F+ + +L+ H R
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 28.8 bits (65), Expect = 0.51
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + C CG+ F L VHQ
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 28.8 bits (65), Expect = 0.55
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHM 47
+ G S E + C C KSF + ++ H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 25.3 bits (56), Expect = 9.4
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
+ + Y C C + + + +L H +
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K ++ K NL H + H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 29.4 bits (67), Expect = 0.34
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KCE C K ++ K N+ H H ++
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQ-KVHTGERPSGP 43
Score = 26.3 bits (59), Expect = 3.5
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K +KC +C + + +K +L H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 26.3 bits (59), Expect = 4.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC+ C + Y K+NL H K+H G +
Sbjct: 6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 26.3 bits (59), Expect = 4.3
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK YKC C K + + D H
Sbjct: 2 SSGSSGTGEKP-YKCEKCGKGYNSKFNLDMH 31
Score = 26.3 bits (59), Expect = 4.5
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C+ CG+ + S+ L +HQ +H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 26.0 bits (58), Expect = 6.4
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+C +C K + ++ + H + H E +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 37.1 bits (87), Expect = 6e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K F CA+C K+FS+ S L+ H R H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 29.8 bits (68), Expect = 0.27
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + F C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 27.1 bits (61), Expect = 1.9
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ F+C C KSF S + H H +K
Sbjct: 10 EKPFECAECGKSFSISSQLATHQ-RIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 5.9
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
S T EK ++C C K F S+ H
Sbjct: 3 SGSSGTGEKP-FECAECGKSFSISSQLATH 31
Score = 25.5 bits (57), Expect = 8.2
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
E F+C +C K FS + H R H K S
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 8.8
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K +C +C +SF L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C KAF KS L H R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 27.9 bits (63), Expect = 1.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + + C CG+ F + LLIVH+ H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 25.6 bits (57), Expect = 6.3
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ ++C C K+F KS + H TH
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHE-RTHAGVSGPSS 43
Score = 25.2 bits (56), Expect = 8.6
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y+C C + + +K L H + H G +
Sbjct: 6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 37.2 bits (87), Expect = 6e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K+F S L KH R H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 28.7 bits (65), Expect = 0.65
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + CK CG+ F L+ HQ +H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 28.3 bits (64), Expect = 0.84
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 89
+ +K Y CK C + +R+ L H ++H G K +
Sbjct: 6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.98
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 60
E+ + C+ C KSF S + +H H +K
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQ-RVHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.5
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T EK Y C C K F+ ++ KH H
Sbjct: 2 SSGSSGTGEKP-YNCKECGKSFRWASCLLKHQRVH 35
Score = 26.4 bits (59), Expect = 3.6
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 198
E + CK+C K F H R H+ K S
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 6.5
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y C EC K F + +H R H+ E +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 36.7 bits (86), Expect = 7e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K F C+ C+KAFS KS L H + H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 29.0 bits (66), Expect = 0.40
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ F C C K+F KS + H TH +K
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQ-QTHAEEKPSGP 41
Score = 27.5 bits (62), Expect = 1.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 394 FRCKSCGRRFESEELLIVHQVIH 416
F C C + F S+ L+VHQ H
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTH 33
Score = 27.1 bits (61), Expect = 1.8
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
+ E F C C K FS + +H + HA K S
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 27.1 bits (61), Expect = 2.3
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 192 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
K + CS CEK F+++ + H + H +E +
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPSGPS 42
Score = 26.0 bits (58), Expect = 5.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 419 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
K C+ CE++F +K +L H H + K
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 25.6 bits (57), Expect = 7.5
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKC 340
C C++ F ++ L H+ +H EK
Sbjct: 12 GCSCCEKAFSSKSYLLVHQQTHAEEKP-SGP 41
Score = 25.6 bits (57), Expect = 7.8
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 252
+ E + C+ C +F +KS L+ H H P +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 7e-04
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K + + +L H R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 28.7 bits (65), Expect = 0.65
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K + + ++ H H +K
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQ-RVHTGEKLSGP 43
Score = 27.1 bits (61), Expect = 2.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S + EK YKC+ C K +K+ D H
Sbjct: 2 SSGSSGSGEKP-YKCVECGKGYKRRLDLDFH 31
Score = 26.7 bits (60), Expect = 3.1
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K +KC +C + +K + L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 26.3 bits (59), Expect = 3.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + ++C CG+ ++ L HQ +H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 26.3 bits (59), Expect = 4.3
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + K Y+C EC K + + H R H E +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPS 44
Score = 26.0 bits (58), Expect = 5.0
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC C + Y+ + +L H ++H G K+
Sbjct: 6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 7e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K ++C C KAF L ++L++H+R H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 27.5 bits (62), Expect = 1.5
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S T EK Y C C K F S ++H+ H
Sbjct: 3 SGSSGTGEKP-YSCNVCGKAFVLSAHLNQHLRVH 35
Score = 27.1 bits (61), Expect = 2.1
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 60
E+ + C +C K+F +++ +H+ H +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHL-RVHTQETLSGPS 44
Score = 26.7 bits (60), Expect = 3.5
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
K + C C ++F HL QHL H + +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 26.3 bits (59), Expect = 4.8
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ K + C C K F +HL H+ VH
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 25.9 bits (58), Expect = 5.4
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y C +C + + +L HL++H +
Sbjct: 6 SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 25.6 bits (57), Expect = 7.9
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C CG+ F L H +H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 7e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C+ C K+F KS L H R H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 27.1 bits (61), Expect = 2.3
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C CG+ F + L VHQ IH
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 26.7 bits (60), Expect = 2.8
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ ++C C KSF KS + H H +
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQ-RIHTGENPSGP 43
Score = 25.6 bits (57), Expect = 7.0
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 411 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K ++C+ C +SF K L H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 25.2 bits (56), Expect = 9.1
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y CS+C K F + + H R H E+ +
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.8 bits (86), Expect = 8e-04
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K F C +C K F S H R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 28.7 bits (65), Expect = 0.62
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ FKCE C K F S H +H +K
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQ-RSHSGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.3
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + F+C+ CG+ F + HQ H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 27.1 bits (61), Expect = 2.5
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + K ++C EC K F T H R H+ E +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPS 44
Score = 26.4 bits (59), Expect = 3.6
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K +KC+ C + + +H + H G K
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 26.4 bits (59), Expect = 4.6
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S + EK +KC C K F ++ H
Sbjct: 2 SSGSSGSGEKP-FKCEECGKGFYTNSQCYSH 31
Score = 26.0 bits (58), Expect = 5.2
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
+ E FKC++C K F + + H R+H+ K S
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G + + C++C KAF KS LS H R H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 26.7 bits (60), Expect = 2.9
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
ER ++C C K+F KS + H H +K
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQ-RIHRGEKPSGP 43
Score = 26.7 bits (60), Expect = 3.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ R + C CG+ F + L +HQ IH
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 26.3 bits (59), Expect = 3.6
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + Y CSEC K F + + H R H E +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGPS 44
Score = 25.9 bits (58), Expect = 5.5
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 211 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
E Y C+ C +F KSTL H H G P +
Sbjct: 2 SSGS-SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 7.7
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 453
+ ++C++C ++F K L H H K
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 36.7 bits (86), Expect = 8e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K F C +C K FS +S L+ H + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 29.4 bits (67), Expect = 0.31
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ FKC C K F +S + H H +K
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHH-KLHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 3.2
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + F+C CG+ F L VH +H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 26.3 bits (59), Expect = 4.0
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
E FKC +C K FS ++H + H K S
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 4.9
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T EK +KC+ C K F + ++ + H + H
Sbjct: 2 SSGSSGTGEKP-FKCVECGKGFSRRSALNVHHKLH 35
Score = 25.9 bits (58), Expect = 6.2
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K KC +C + F + L H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 25.6 bits (57), Expect = 7.5
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K +KC C + + + L H K+H G K
Sbjct: 6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 9e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C KAF+ K+NL++H R H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 28.2 bits (64), Expect = 0.91
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ ++C C K+F K+N+ +H H +K
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQ-RIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.8
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + +RC CG+ F + L HQ IH
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 25.9 bits (58), Expect = 4.9
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K YRC EC K FA + + QH R H E +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 5.3
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K ++C +C ++F K +L QH
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 25.5 bits (57), Expect = 8.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y+C C + + K NL H ++H G K
Sbjct: 6 SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 9.1
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK Y+C C K F + + +H
Sbjct: 2 SSGSSGTGEKP-YRCGECGKAFAQKANLTQH 31
Score = 25.2 bits (56), Expect = 9.8
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 211 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
E Y C C +F K+ L H H G P +
Sbjct: 2 SSGS-SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K F C C K+F +S L++H H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 31.3 bits (72), Expect = 0.074
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ FKC++C KSF +S + RH H +K
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHS-MVHTAEKPSGP 43
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T EK +KC C K F + ++H H
Sbjct: 2 SSGSSGTGEKP-FKCDICGKSFCGRSRLNRHSMVH 35
Score = 27.5 bits (62), Expect = 1.8
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 411 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K KC C +SF + L +H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 26.7 bits (60), Expect = 3.1
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K +KC +C + + + L H +H K
Sbjct: 6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 25.9 bits (58), Expect = 5.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVH 471
K F C C K F S L H +VH
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 25.5 bits (57), Expect = 7.8
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K ++C C K F + +H H E +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +CD FS S+L H H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 30.6 bits (70), Expect = 0.11
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C F S++R H H +K
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQ-NVHVGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.44
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S EKT +KC C F +++S H H
Sbjct: 2 SSGSSGMGEKT-WKCRECDMCFSQASSLRLHQNVH 35
Score = 29.0 bits (66), Expect = 0.46
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 89
+ +K +KC+ C + +L+ H +H G K +
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.96
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K ++C EC+ F+ +R H H E +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGPS 44
Score = 26.4 bits (59), Expect = 3.7
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
E +KC++C FS LH H K S
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 26.0 bits (58), Expect = 6.4
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQ 425
+ ++++C+ C F L +HQ +H K +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 9.6
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKC 340
KCR C F L H+ H EK
Sbjct: 14 KCRECDMCFSQASSLRLHQNVHVGEKP-SGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM 108
G K TC +C K F S L H R HM
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 27.9 bits (63), Expect = 1.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + +S C CG+ F L +HQ +H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 26.8 bits (60), Expect = 2.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S + EK+ + C C K F ++ H H
Sbjct: 3 SGSSGSGEKS-HTCDECGKNFCYISALRIHQRVH 35
Score = 26.8 bits (60), Expect = 3.0
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 49 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
++ +K + C C + + Y L+ H ++H G K
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 26.8 bits (60), Expect = 3.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRH 46
E+ C+ C K+F + S +R H
Sbjct: 10 EKSHTCDECGKNFCYISALRIH 31
Score = 26.0 bits (58), Expect = 5.3
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 412 HQVIHER-KFHKCTQCEESFKNKKHLKQH 439
K H C +C ++F L+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 0.001
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G + C+ C K F SN +H R H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 30.2 bits (69), Expect = 0.20
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + R RC CG+ F I H+ IH
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 28.3 bits (64), Expect = 0.91
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S E+ ++C C K F ++++F +H H
Sbjct: 3 SGSSGHGERG-HRCSDCGKFFLQASNFIQHRRIH 35
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
ER +C C K F SN +H H +K
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHR-RIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 4.3
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ ++ ++C C + + N H ++H G K
Sbjct: 6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C C K+F S+L+ H R H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 29.4 bits (67), Expect = 0.35
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC++C KSF + S++ H H +K
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQ-RIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.1
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK YKC CHK F+ +S H
Sbjct: 2 SSGSSGTGEKP-YKCDVCHKSFRYGSSLTVH 31
Score = 27.1 bits (61), Expect = 2.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC +C + +RY +L H ++H G K
Sbjct: 6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 3.4
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 412 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 439
K +KC C +SF+ L H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 25.9 bits (58), Expect = 5.6
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 198
E +KC C K F +H R H K S
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 6.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C C + F L VHQ IH
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 25.6 bits (57), Expect = 7.8
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKC 340
KC C + FR LT H+ HT EK
Sbjct: 14 KCDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
Score = 25.2 bits (56), Expect = 9.7
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ K + C C K FR+ S L H +H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C+ C K+F+ KS L H + H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 27.5 bits (62), Expect = 1.4
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C CG+ F + L VHQ IH
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 26.7 bits (60), Expect = 2.8
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
E Y C+ C SF KS L H H G P +
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 26.0 bits (58), Expect = 6.0
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y CS C K F + + H + H E +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 6.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 60
E+ ++C +C KSF KS + H H +K
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQ-QIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 9.1
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y+C +C + + K L H ++H G K
Sbjct: 6 SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K F C C KAFS L++H R H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 27.5 bits (62), Expect = 1.7
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ F C C K+F + +H H +K
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHR-RIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 4.0
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ K F C C K F L H +H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 26.3 bits (59), Expect = 4.1
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + F C CG+ F L H+ IH
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 25.9 bits (58), Expect = 6.0
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T EK + C+ C K F ++H H
Sbjct: 2 SSGSSGTGEKP-FDCIDCGKAFSDHIGLNQHRRIH 35
Score = 25.6 bits (57), Expect = 7.3
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
E F C C K FSD I + H R H K S
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G + + C++C KAF+ KS L H R H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 29.0 bits (66), Expect = 0.45
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ R + C CG+ F + LI+HQ IH
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 27.1 bits (61), Expect = 2.1
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
E Y C+ C +F KSTL+ H H G P +
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 27.1 bits (61), Expect = 2.5
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
ER ++C C K+F KS + H H +K
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQ-RIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 3.0
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + Y CSEC K FA + + H R H E +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 0.001
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K FS KS LS H R H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 28.3 bits (64), Expect = 0.77
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ + C C K+F KS + H TH +K
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQ-RTHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.5
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + K Y C+EC K F+ + I+ H R H E +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.8
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + + C CG+ F + +L HQ H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 26.3 bits (59), Expect = 4.3
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 198
+ E + C +C K FS + H R H K S
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
Score = 26.0 bits (58), Expect = 4.8
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y C C + + K L AH + H G K
Sbjct: 6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 5.1
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 411 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K + C +C ++F K L H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 25.2 bits (56), Expect = 9.5
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S + EK Y C C K F + + H H
Sbjct: 2 SSGSSGSGEKP-YGCNECGKTFSQKSILSAHQRTH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C C KAF L + L +H R H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 29.8 bits (68), Expect = 0.22
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQ 425
+ + + + C CG+ F L+ HQ IH K +
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 27.5 bits (62), Expect = 1.6
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ + C+ C K+F + + RH H +K
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQ-RIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 3.4
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 89
+ +K Y C C + + L H ++H G K +
Sbjct: 6 SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 26.3 bits (59), Expect = 3.9
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S + EK Y C YC K F S +H H
Sbjct: 3 SGSSGSGEKP-YVCDYCGKAFGLSAELVRHQRIH 35
Score = 25.6 bits (57), Expect = 8.5
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 211 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
+ E YVC+YC +F + LV H H G P +
Sbjct: 2 SSGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C+ C KAFS + +LS H R H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 26.3 bits (59), Expect = 3.8
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ ++C +C K+F H+ ++ H H +K
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQ-RIHSGKKPSGP 43
Score = 25.9 bits (58), Expect = 5.5
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C CG+ F + L VHQ IH
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 25.5 bits (57), Expect = 6.7
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y+C +C + + ++ +L H ++H G K
Sbjct: 6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 25.5 bits (57), Expect = 8.6
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y CS C K F+ + H R H+ + +
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C KAF S L +H R H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 29.0 bits (66), Expect = 0.49
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ + CE C K+F H S ++ H H +K
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQ-RIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C+ CG+ F + L HQ IH
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 27.5 bits (62), Expect = 1.7
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK Y C C K F + +H
Sbjct: 2 SSGSSGTGEKP-YNCEECGKAFIHDSQLQEH 31
Score = 25.6 bits (57), Expect = 6.6
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y C+ C + + + L+ H ++H G K
Sbjct: 6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 7.1
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y C EC K F + +++H R H E +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 7.9
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K + C +C ++F + L++H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 25.2 bits (56), Expect = 9.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 439 HLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ K ++C +C K F H+S LQ H +H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.9 bits (84), Expect = 0.001
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C KAF KS L H R H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 27.4 bits (62), Expect = 1.5
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C CG+ F S+ LI+H H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 27.4 bits (62), Expect = 1.8
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
+ + C C K+F KS + H TH +
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHT-RTHTGESGPSS 43
Score = 26.3 bits (59), Expect = 4.4
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ K Y C C + +R K L H + H G +
Sbjct: 6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 25.9 bits (58), Expect = 5.5
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 225
G + K Y C+EC K F ++ + H R H E
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGESGPSS 43
Score = 25.5 bits (57), Expect = 7.7
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 412 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 439
K + C +C ++F++K +L H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K F + +L H H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 29.4 bits (67), Expect = 0.30
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KCE C K F + ++ H H +K
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHH-MVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.7
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T EK YKC C K F H H
Sbjct: 2 SSGSSGTGEKP-YKCEECGKGFICRRDLYTHHMVH 35
Score = 26.0 bits (58), Expect = 5.8
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC+ C + + + +L H +H G K
Sbjct: 6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 6.2
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+C EC K F + H H E +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 6.5
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C+ CG+ F L H ++H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 25.6 bits (57), Expect = 8.9
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
E +KC++C K F + H H K S
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K+F KS+L++H R H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 28.2 bits (64), Expect = 0.92
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ + C C KSF KS++ RH H +K
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHR-RIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 4.5
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 412 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 439
K + C +C +SF K HL +H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 26.3 bits (59), Expect = 4.6
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T EK Y C C K F + + ++H H
Sbjct: 2 SSGSSGTGEKP-YICNECGKSFIQKSHLNRHRRIH 35
Score = 25.6 bits (57), Expect = 8.8
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 198
E + C +C K F + + H R H K S
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 8.9
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C CG+ F + L H+ IH
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 25.2 bits (56), Expect = 9.6
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y C+EC K F + + +H R H E +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGPS 44
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 36.1 bits (83), Expect = 0.001
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 417 ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKC 454
RK C C + F++ HL +H L+H K +
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 34.9 bits (80), Expect = 0.003
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 48 AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC 90
++ +K+ C++C +++R ++L H H G K ++
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 32.6 bits (74), Expect = 0.024
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCA 63
+ ++ CE+C K F ++ RH +H +K Y +
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHK-LSHSGEKPYSSGPSS 47
Score = 31.4 bits (71), Expect = 0.065
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSC 399
C +C K + +L+RH L+H+ + +
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.1 bits (65), Expect = 0.39
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ K C C K F +L++H H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 28.8 bits (64), Expect = 0.58
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEK 335
C C ++FR+ L H+LSH+ EK
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEK 39
Score = 27.2 bits (60), Expect = 2.0
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVH 471
K C C K+FR HL H + H
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSH 35
Score = 26.8 bits (59), Expect = 2.8
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 499 HETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
T + C+ C F L RH SH
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 26.8 bits (59), Expect = 3.2
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQC 426
+ R+ C+ CG+ F L H++ H K +
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.4 bits (58), Expect = 4.8
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 187 GRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYC 228
K C C K F + +H + H+ E Y
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.0 bits (84), Expect = 0.001
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C C F ++L HV H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 29.0 bits (66), Expect = 0.39
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHM 47
E+ +KCE C F +++R H+
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHV 31
Score = 28.6 bits (65), Expect = 0.62
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S EK YKC C F + H+ H
Sbjct: 2 SSGSSGGEKP-YKCETCGARFVQVAHLRAHVLIH 34
Score = 27.9 bits (63), Expect = 0.89
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C++CG RF L H +IH
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 27.5 bits (62), Expect = 1.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
+ +K YKC+ C + +L+AH+ +H G
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 26.7 bits (60), Expect = 2.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVH 471
K + C C F +HL+ HV++H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 25.6 bits (57), Expect = 6.1
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 412 HQVIHER-KFHKCTQCEESFKNKKHLKQHLLAH 443
K +KC C F HL+ H+L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 25.6 bits (57), Expect = 7.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 477 HKCLYCFKVFVHKAHLDKHLILH 499
+KC C FV AHL H+++H
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIH 34
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C QC KAFS++S+L+ H H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 27.9 bits (63), Expect = 1.2
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 27.1 bits (61), Expect = 2.3
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 60
E+ ++C C K+F +S++ H A H +K
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQ-AIHTGKKPSGPS 44
Score = 26.3 bits (59), Expect = 3.5
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
E Y CN C +F +S+L H H G P +
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 26.0 bits (58), Expect = 6.5
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y+C C + + + +L H +H G K
Sbjct: 6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 25.2 bits (56), Expect = 9.1
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 453
K ++C QC ++F + L H H K
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 36.0 bits (83), Expect = 0.002
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G F C++CD+ F+ ++ L +H R H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 30.2 bits (68), Expect = 0.19
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERK 419
+ F+C C R F L+ H+ H RK
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 28.3 bits (63), Expect = 0.93
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 49 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
++ + +KC C R++ + L H + H
Sbjct: 5 SSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 26.7 bits (59), Expect = 3.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRH 46
E FKC C + F ++ + +H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQH 31
Score = 26.4 bits (58), Expect = 4.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 422 KCTQCEESFKNKKHLKQHLLAH 443
KC++C+ F + +L QH H
Sbjct: 14 KCSKCDRVFTQRNYLVQHERTH 35
Score = 26.4 bits (58), Expect = 4.1
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNR 362
+ S E +KC C +VF + +H H R
Sbjct: 2 SSGSSGAGENP-FKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 26.4 bits (58), Expect = 4.4
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFR 214
G + A ++CS+C++ F + + QH R
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 26.4 bits (58), Expect = 4.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA 191
A EN FKC KC +VF+ H R HA
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 26.0 bits (57), Expect = 5.0
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ F C KC ++F ++L H H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C +C KAF +S+L+ H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 28.7 bits (65), Expect = 0.69
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K+F +S++ H ATH +K
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQ-ATHSGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.5
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F + L +HQ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 27.1 bits (61), Expect = 2.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC C + +R + +L H H G K
Sbjct: 6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 26.3 bits (59), Expect = 4.5
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+C+EC K F + H H+ E +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HSGEKPSGPS 44
Score = 25.6 bits (57), Expect = 6.8
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S T EK YKC C K F+ +S H H
Sbjct: 3 SGSSGTGEKP-YKCNECGKAFRARSSLAIHQATH 35
Score = 25.6 bits (57), Expect = 7.0
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 412 HQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 453
K +KC +C ++F+ + L H H K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G + + C +C KAF KS+L H R H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 28.7 bits (65), Expect = 0.61
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ +R + C CG+ F+++ LI H+ H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 28.3 bits (64), Expect = 0.76
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 60
+R ++C C K+F KS++ H +H +K
Sbjct: 10 QRPYECIECGKAFKTKSSLICHR-RSHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.5
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAH--AKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + Y C EC K F T+ + H R+ H E +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 6.6
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 211 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 252
+ + Y C C +F+TKS+L+ H H G P +
Sbjct: 2 SSGSS-GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 6.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ Q+ Y+C C + ++ K +L H + H G K
Sbjct: 6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 7.2
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 198
+ ++C +C K F + H R+H K S
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 8.4
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S T ++ Y+C+ C K FK +S H H
Sbjct: 3 SGSSGTGQRP-YECIECGKAFKTKSSLICHRRSH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C C KAF+ K++L++H + H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 27.9 bits (63), Expect = 0.99
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + CK C + F + L HQ H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 27.1 bits (61), Expect = 2.0
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 60
E+ ++C++C K+F K+++ +H TH +K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQ-KTHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 5.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y+CK+C++ + K +L H K H G K
Sbjct: 6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 5.3
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
K ++C C ++F K HL QH H K
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 7.1
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y C C K F + + QH + H E +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 8.6
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 198
E ++CK C K F+ + H + H K S
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K C +C K+FS S L H R H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 29.4 bits (67), Expect = 0.33
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + C+ CG+ F LIVHQ IH
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 26.7 bits (60), Expect = 2.8
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
E + C C SF S L+ H H G NP +
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 26.3 bits (59), Expect = 4.3
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 453
K H+C +C +SF L H H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 25.6 bits (57), Expect = 7.5
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +C C KSF S + H H +
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQ-RIHTGENPSGP 43
Score = 25.6 bits (57), Expect = 8.0
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S T EK ++C C K F ++ H H
Sbjct: 3 SGSSGTGEKP-HECRECGKSFSFNSQLIVHQRIH 35
Score = 25.6 bits (57), Expect = 8.3
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K ++C+ C + + + L H ++H G
Sbjct: 6 SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 25.6 bits (57), Expect = 8.4
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K + C EC K F+ + H R H E+ +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C KAFS+ S+L+ H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 28.6 bits (65), Expect = 0.68
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C CG+ F L HQVIH
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 28.3 bits (64), Expect = 0.77
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
+ + C C K+F S++ H H +K
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQ-VIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 2.7
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T K Y C C K F +S H H
Sbjct: 2 SSGSSGTGVKP-YMCNECGKAFSVYSSLTTHQVIH 35
Score = 25.9 bits (58), Expect = 5.8
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ VK + C +C K F S L H ++H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 25.6 bits (57), Expect = 7.0
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
Y+CN C +F S+L H H G P +
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 7.4
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ K Y C C + + +L H +H G K
Sbjct: 6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 7.8
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y C+EC K F+ + H H E +
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K F C +C K+++ + +L++H R H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 28.3 bits (64), Expect = 0.90
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + F+C CG+ + L HQ +H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 27.5 bits (62), Expect = 1.6
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 453
K KC +C +S+ + HL QH H K
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 26.7 bits (60), Expect = 2.6
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ FKC C KS++ + ++ +H H +K
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQ-RVHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 4.3
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K ++C EC K + + QH R H E +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 4.5
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K +KC C + Y + +L H ++H G K
Sbjct: 6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K C +C KAF KS L H R H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 29.4 bits (67), Expect = 0.33
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ KC C K+F KS + H TH K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQ-RTHVDDKHSGP 43
Score = 28.3 bits (64), Expect = 0.88
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + +C CG+ F + LI+HQ H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K KC C + + +K L H + H K
Sbjct: 6 SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 27.5 bits (62), Expect = 1.5
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K +C+EC K F + + H R H + +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKHSGPS 44
Score = 26.4 bits (59), Expect = 4.0
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T EK KC C K F + H H
Sbjct: 2 SSGSSGTGEKP-CKCTECGKAFCWKSQLIMHQRTH 35
Score = 25.6 bits (57), Expect = 7.6
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 252
E C C +F KS L+ H H +
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 25.6 bits (57), Expect = 8.5
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
E KC +C K F + + +H R H K S
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 25.2 bits (56), Expect = 9.4
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 412 HQVIHER-KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
K KCT+C ++F K L H H K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K F C +C K F+ S L H R H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 27.9 bits (63), Expect = 0.99
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHE-RKFHKCTQ 425
+ + + F+C+ CG+RF L HQ +H K +
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 1.2
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ FKCE C K F S + H H +K
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQ-RVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 2.9
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 89
+ +K +KC+ C + + L +H ++H G K +
Sbjct: 6 SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 26.7 bits (60), Expect = 3.2
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
S + EK +KC C K F +++ H
Sbjct: 3 SGSSGSGEKP-FKCEECGKRFTQNSQLHSH 31
Score = 26.3 bits (59), Expect = 4.5
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + K ++C EC KRF + H R H E +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 6.1
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
+ E FKC++C K F+ + H H R H K S
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 7.0
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K KC +C + F L H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C C KAFS ++L++H R H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 26.7 bits (60), Expect = 2.6
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ ++C++C K+F H +++ +H H +K
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQ-RVHSGEKPSGP 43
Score = 25.9 bits (58), Expect = 4.9
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ K + C C K F H + L H VH
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 25.5 bits (57), Expect = 6.8
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C C + F L HQ +H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 25.5 bits (57), Expect = 7.5
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K Y+C +C + + + +L H ++H G K
Sbjct: 6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 25.5 bits (57), Expect = 7.8
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 411 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K ++C C ++F + L QH
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 25.2 bits (56), Expect = 9.2
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y C C K F+ + QH R H+ E +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGPS 44
Score = 25.2 bits (56), Expect = 9.7
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
S T EK Y+C C K F S +H
Sbjct: 3 SGSSGTGEKP-YECDVCRKAFSHHASLTQH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C KAFS S L++H R H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 26.7 bits (60), Expect = 2.7
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
+ ++C C K+F S + RH H +K
Sbjct: 10 GKPYQCNECGKAFSQTSKLARHQ-RVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 5.9
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F L HQ +H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 26.0 bits (58), Expect = 6.3
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T K Y+C C K F +++ +H H
Sbjct: 2 SSGSSGTGGKP-YQCNECGKAFSQTSKLARHQRVH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G + C +C KAFS K L H R H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + C CG+ F + LI HQ H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 26.7 bits (60), Expect = 2.8
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E ++C C K+F K + H TH +K
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQ-RTHAGEKPSGP 43
Score = 25.9 bits (58), Expect = 6.4
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNH 253
E+ Y C+ C +F K L+ H H G P +
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 25.5 bits (57), Expect = 8.2
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 411 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
++C +C ++F K L H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 25.5 bits (57), Expect = 8.4
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + Y C EC K F+ + + H R H E +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRT-HAGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K F C +C K F+ S+L H R H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 27.5 bits (62), Expect = 1.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + F+C+ CG+RF L HQ +H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 26.7 bits (60), Expect = 3.2
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
K +C +C + F HL H H K
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 5.4
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + K ++C EC KRF + H R H E +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 5.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ K F C +C K F SHL +H VH
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 25.6 bits (57), Expect = 6.6
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ F+CE C K F S++ H H +K
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQ-RVHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 7.7
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
+ E F+C++C K F+ H H R H K S
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 9.9
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
S + EK ++C C K F +++ H
Sbjct: 3 SGSSGSGEKP-FQCEECGKRFTQNSHLHSH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C +C KAFS S L++H R H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 27.9 bits (63), Expect = 1.2
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 27.1 bits (61), Expect = 2.0
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K+F S + RH H +K
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQ-RIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 4.7
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S T EK YKC C K F +++ +H H
Sbjct: 3 SGSSGTGEKP-YKCNECGKAFSQTSKLARHQRIH 35
Score = 25.6 bits (57), Expect = 7.7
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+C+EC K F+ + +H R H E +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K F+ S+L+ H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 27.5 bits (62), Expect = 1.6
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 26.3 bits (59), Expect = 4.0
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K +KC +C + F HL H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 25.9 bits (58), Expect = 5.0
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K F S++ H H K
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQ-RIHTGVKPSGP 43
Score = 25.9 bits (58), Expect = 6.2
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC C +++ +L H ++H G K
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 25.6 bits (57), Expect = 6.6
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK YKC C KVF +++ H
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFTQNSHLANH 31
Score = 25.6 bits (57), Expect = 7.3
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+C+EC K F + H R H +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C KAF SNL+ H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 27.9 bits (63), Expect = 1.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K+F SN+ H H +K
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQ-VIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.3
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ K + C +C K FR S+L H ++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 27.5 bits (62), Expect = 1.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F + L HQVIH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 27.1 bits (61), Expect = 2.2
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK YKC C K F+ ++ H
Sbjct: 2 SSGSSGTGEKP-YKCNECGKAFRAHSNLTTH 31
Score = 26.7 bits (60), Expect = 2.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC C + +R NL H +H G K
Sbjct: 6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 7.8
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKC 340
KC C + FR LT H++ HT EK
Sbjct: 14 KCNECGKAFRAHSNLTTHQVIHTGEKP-SGP 43
Score = 25.2 bits (56), Expect = 9.4
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 412 HQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 453
K +KC +C ++F+ +L H + H K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K F C +C KAF +L+ H+R H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 28.2 bits (64), Expect = 0.99
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + F+CK CG+ F L H IH
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 27.1 bits (61), Expect = 2.2
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ FKC+ C K+F ++ H+ H +K
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.4
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K KC +C ++F+ HL H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 26.3 bits (59), Expect = 4.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K +KCK C + +R +L +HL++H G K
Sbjct: 6 SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C KAF S+ ++H R H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 27.5 bits (62), Expect = 1.4
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K+F S+ +H H Q+
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQ-RLHTGQRPSGP 43
Score = 27.5 bits (62), Expect = 1.4
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T EK YKC+ C K F ++S +H H
Sbjct: 2 SSGSSGTGEKP-YKCMECGKAFGDNSSCTQHQRLH 35
Score = 26.8 bits (60), Expect = 2.9
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F HQ +H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 26.4 bits (59), Expect = 3.8
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+C EC K F QH R H + +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGPS 44
Score = 26.0 bits (58), Expect = 6.2
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC C + + + H ++H G +
Sbjct: 6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 25.2 bits (56), Expect = 9.5
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 453
K +KC +C ++F + QH H +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C +C KAFS ++L +H R H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + CK CG+ F LI HQ +H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 25.5 bits (57), Expect = 6.7
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K ++C +C ++F HL QH
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 25.5 bits (57), Expect = 7.6
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ ++C+ C K+F +++ +H H +K
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQ-RVHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C +C K F S LS+H R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 29.0 bits (66), Expect = 0.49
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K F H S + RH H +K
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQ-RIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ K + C +C K+FRH S+L H +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 27.9 bits (63), Expect = 1.3
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 27.1 bits (61), Expect = 2.5
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
S T EK YKC C KVF+ ++ +H
Sbjct: 3 SGSSGTGEKP-YKCNECGKVFRHNSYLSRH 31
Score = 26.7 bits (60), Expect = 3.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC C +++R+ L H ++H G K
Sbjct: 6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 4.6
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 198
E +KC +C KVF H R H K S
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 26.3 bits (59), Expect = 4.8
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+C+EC K F + +H R H E +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 5.2
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 412 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 439
K +KC +C + F++ +L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G + C +C K FS K L H + H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 27.5 bits (62), Expect = 1.5
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + C CG+ F ++ L+ HQ H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 26.7 bits (60), Expect = 2.7
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T E Y+C C KVF + H
Sbjct: 2 SSGSSGTGEN-PYECCECGKVFSRKDQLVSH 31
Score = 25.2 bits (56), Expect = 9.9
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E ++C C K F K + H TH Q
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQ-KTHSGQSGPSS 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G + F C +C K F +S+L+ H+R H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 28.3 bits (64), Expect = 0.94
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
ER FKC C K F +S++ H+ H +K
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHL-RLHSREKSSGP 43
Score = 27.5 bits (62), Expect = 1.7
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + R F+C CG+ F L H +H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 27.1 bits (61), Expect = 2.0
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 49 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
++ ++ +KC C + + + +L HL++H K
Sbjct: 5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 26.3 bits (59), Expect = 4.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S + E+ +KC C K F + + H+ H
Sbjct: 3 SGSSGSGERP-FKCNECGKGFGRRSHLAGHLRLH 35
Score = 26.0 bits (58), Expect = 4.9
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + + ++C+EC K F + H R H++E + +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGPS 44
Score = 25.2 bits (56), Expect = 9.3
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
+ E FKC +C K F H R H+ K S
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 25.2 bits (56), Expect = 9.3
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 412 HQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
ER F KC +C + F + HL HL H + K
Sbjct: 3 SGSSGSGERPF-KCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 36.5 bits (84), Expect = 0.003
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 20/83 (24%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
+ + C ++F + H+ H + +C W
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC------YWE------------- 63
Query: 85 FTCAQCDKAFSLKSNLSKHVRHH 107
C + K+F K L H+R H
Sbjct: 64 -ECPREGKSFKAKYKLVNHIRVH 85
Score = 35.3 bits (81), Expect = 0.009
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQV---IHERKFHK-------CTQCEESFKNKKHL 436
+ S KSC R F + L+ H + + + C + +SFK K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 437 KQHLLAHEKVKVFHC 451
H+ H K
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 33.0 bits (75), Expect = 0.058
Identities = 14/86 (16%), Positives = 20/86 (23%), Gaps = 21/86 (24%)
Query: 443 HEKVKVFHCPKCPKLFRHESHLQNHV-IVHDESEVHKCLYCFKVFVHKAHLDKHLILHET 501
E C + F L HV + H C+
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW----------------- 62
Query: 502 SEMHNCDFCHLTFTTDNDLIRHMRSH 527
C +F L+ H+R H
Sbjct: 63 ---EECPREGKSFKAKYKLVNHIRVH 85
Score = 29.6 bits (66), Expect = 0.82
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 498 LHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHT-----------CDICGEKFIND 546
+ E C TF+T ++L+ H+ H C G+ F
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTME---HVGGPEQNNHVCYWEECPREGKSFKAK 75
Query: 547 LKLKAHIKI 555
KL HI++
Sbjct: 76 YKLVNHIRV 84
Score = 28.8 bits (64), Expect = 1.8
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 404 ESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHL----LAHEKVKVF-----HCPKC 454
++ L + + C+ +F L H+ + + CP+
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE 68
Query: 455 PKLFRHESHLQNHVIVH 471
K F+ + L NH+ VH
Sbjct: 69 GKSFKAKYKLVNHIRVH 85
Score = 28.4 bits (63), Expect = 2.1
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 78 MHKGPKIFTCAQCDKAFSLKSNLSKHV-RHHMENVKQ---------CKICLEIFEDDEVL 127
+ + CD+ FS L HV H+ +Q C + F+ L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 128 EEHVKSHQN-RRFKC 141
H++ H +
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 28.4 bits (63), Expect = 2.7
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 266 NHECTSCFTCPFCQRKYKIEKHLEKHIESC-IQLNPTTTVLKTLQKCRYCQRMFRNEDKL 324
E C R + L H+ + + ++C + F+ + KL
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 325 TAHELSHTMEKTLYKC 340
H HT EK+
Sbjct: 79 VNHIRVHTGEKS-GPS 93
Score = 27.6 bits (61), Expect = 4.1
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 10/70 (14%)
Query: 192 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCY--------DSFETKSTLVDHFF 243
C++ F+T + H H + CY SF+ K LV+H
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 244 HHGN--PYMC 251
H
Sbjct: 84 VHTGEKSGPS 93
Score = 26.9 bits (59), Expect = 8.2
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 9/68 (13%)
Query: 338 YKCLYCHKVFKKSTSFDKHME----HHNRNVLHKCH-----LCTKAYPSEKNLDRHLLTH 388
C + F H+ H C+ K++ ++ L H+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 389 NVRRSFRC 396
+S
Sbjct: 86 TGEKSGPS 93
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.1 bits (82), Expect = 0.003
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K F+ S+L +H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 27.8 bits (63), Expect = 1.2
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F L+ H+ IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 26.3 bits (59), Expect = 4.4
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K F S++ RH H +K
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHR-GIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 8.0
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K +KC +C + F HL +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 25.5 bits (57), Expect = 8.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK YKC C KVF +++ +H
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFTQNSHLVRH 31
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C +C K FS S LS+H + H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 27.1 bits (61), Expect = 2.2
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 26.7 bits (60), Expect = 3.4
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 453
K +KC +C + F L QH H K
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 26.3 bits (59), Expect = 4.6
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+++KC C K F S + +H H +K
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQ-KIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 5.8
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+C+EC K F+ + QH + H E +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 6.3
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K+YKC C +++ L H K+H G K
Sbjct: 6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 6.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
S T EK YKC C KVF +++ +H + H
Sbjct: 3 SGSSGTGEKR-YKCNECGKVFSRNSQLSQHQKIH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K F S+L++H H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 27.8 bits (63), Expect = 1.1
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K +KC +C + F+ HL +H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 27.4 bits (62), Expect = 1.7
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F L HQ+IH
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 26.7 bits (60), Expect = 3.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K F S++ RH H +K
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQ-LIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S T EK YKC C KVF++++ +H H
Sbjct: 2 SSGSSGTGEKP-YKCHECGKVFRRNSHLARHQLIH 35
Score = 25.5 bits (57), Expect = 8.9
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+C EC K F + +H H E +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ +G K + C++C K+FS L++H H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 27.9 bits (63), Expect = 1.2
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ ++C C KSF + +H TH +K
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQHW-ITHTREKPSGP 43
Score = 27.9 bits (63), Expect = 1.2
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ E K + C +C K F L H I H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 27.9 bits (63), Expect = 1.3
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F L H + H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 27.1 bits (61), Expect = 2.4
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S EK Y+C C K F S +H H
Sbjct: 2 SSGSSGEGEKP-YQCSECGKSFSGSYRLTQHWITH 35
Score = 26.4 bits (59), Expect = 3.7
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+CSEC K F+ + QH+ H +E +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGPS 44
Score = 25.2 bits (56), Expect = 9.1
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ + +K Y+C C + + + L H H K
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 25.2 bits (56), Expect = 9.3
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
E ++C +C K FS + H H K S
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C C K FS S+L H R H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 27.5 bits (62), Expect = 1.8
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC++C K F S+++ H H +K
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQ-RVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.5
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 411 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K +KC C + F HL+ H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 26.3 bits (59), Expect = 4.7
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+C C K F+ ++ H R H E +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 5.0
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
S EK YKC C K F +S+ H
Sbjct: 3 SGSSGMGEK-CYKCDVCGKEFSQSSHLQTH 31
Score = 25.6 bits (57), Expect = 8.3
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC +C + + +L+ H ++H G K
Sbjct: 6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 9.3
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F L HQ +H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C C KAF + S+L +H H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 27.1 bits (61), Expect = 2.0
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
K +KC C ++F+ HL QH H +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 27.1 bits (61), Expect = 2.5
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C+ CG+ F L+ H +H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 26.7 bits (60), Expect = 2.8
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y+C C K F + QH H+ E +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGPS 44
Score = 26.3 bits (59), Expect = 4.8
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC++C + +R +L H +H G +
Sbjct: 6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 25.9 bits (58), Expect = 6.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
S T EK YKC C K F+ S+ +H
Sbjct: 3 SGSSGTGEKP-YKCQVCGKAFRVSSHLVQH 31
Score = 25.6 bits (57), Expect = 8.0
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC++C K+F S++ +H + H ++
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHH-SVHSGERPSGP 43
Score = 25.6 bits (57), Expect = 8.1
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ K + C C K FR SHL H VH
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K F+ S+L+ H R H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 27.5 bits (62), Expect = 1.8
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + ++C CG+ F L H IH
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 26.7 bits (60), Expect = 2.7
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K F S++ H H +K
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHW-RIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 2.9
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 198
+ E +KC +C KVF+ H R H K S
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 6.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ +K YKC C +++ +L H ++H G K
Sbjct: 6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 6.7
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S + EK YKC C KVF +++ H
Sbjct: 2 SSGSSGSGEK-PYKCNECGKVFTQNSHLTNH 31
Score = 25.5 bits (57), Expect = 7.0
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
K +KC +C + F HL H H K
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 8.5
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + K Y+C+EC K F + H+R H E +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K F+ S+L++H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 25.9 bits (58), Expect = 5.4
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++C CG+ F L H+ IH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 25.5 bits (57), Expect = 7.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K F S++ RH H +K
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 8.0
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
K +KC +C + F HL +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 25.2 bits (56), Expect = 9.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK YKC C KVF +++ +H
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFTQNSHLARH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G + C +C K+F ++L +H R H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 28.2 bits (64), Expect = 0.98
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ R +C CG+ F LI HQ IH
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 27.1 bits (61), Expect = 2.5
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 453
+ HKC +C +SF HL QH H K
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 26.7 bits (60), Expect = 2.8
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
ER KC C KSF +++ +H H +K
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQ-RIHTGEKPSGP 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 34.6 bits (80), Expect = 0.004
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K ++CA+C + FS + L +H + H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 28.4 bits (64), Expect = 0.66
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + + C C F L+ HQ +H
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 27.3 bits (61), Expect = 1.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVH 471
K + C +C + F + L H +H
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMH 33
Score = 26.5 bits (59), Expect = 3.3
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 48 AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 81
++ +K Y C C + L H KMH
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTV 35
Score = 26.1 bits (58), Expect = 4.1
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRH 46
E+ + C C ++F + + +H
Sbjct: 8 EKPYSCAECKETFSDNNRLVQH 29
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.9 bits (81), Expect = 0.004
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
K + C +C KAF+ +L++H + H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 27.5 bits (62), Expect = 1.5
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERK 419
+ +S+ C CG+ F L HQ IH RK
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRK 38
Score = 25.6 bits (57), Expect = 6.8
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 412 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 439
+ K + C +C ++F HL +H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K F+ S+L++H H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 26.7 bits (60), Expect = 2.9
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 411 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 439
+K +KC +C + F HL +H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 25.9 bits (58), Expect = 6.2
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
++ +KC C K F S++ RH H +K
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 8.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T +K YKC C KVF +++ +H
Sbjct: 2 SSGSSGTGKKP-YKCNECGKVFTQNSHLARH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K F +L++H R H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 27.5 bits (62), Expect = 1.7
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 89
+ +K Y+CK C + + +L H ++H G + +
Sbjct: 6 SGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 26.7 bits (60), Expect = 3.1
Identities = 6/36 (16%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 60
++ ++C+ C K+F ++ +H H ++
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHK-RVHTGERSSGPS 44
Score = 26.0 bits (58), Expect = 5.2
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + ++ + CK C + F L H+ +H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 25.6 bits (57), Expect = 6.7
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSE 198
+ + ++CK+C K F + H R H + S
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 25.6 bits (57), Expect = 6.8
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH 360
+ S + +K Y+C C K F + ++H H
Sbjct: 2 SSGSSGSGKKP-YECKECRKTFIQIGHLNQHKRVH 35
Score = 25.2 bits (56), Expect = 10.0
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + K Y C EC K F + QH R H E + +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGPS 44
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 34.4 bits (80), Expect = 0.005
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 77 KMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G + C++C KAF+ K L H R H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + C CG+ F ++ LI HQ H
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 26.7 bits (60), Expect = 2.4
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E ++C C K+F+ K + H TH +
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQ-RTHAGESGPSS 41
Score = 25.2 bits (56), Expect = 9.2
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
+ Y+C C + + K L +H + H G +
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.005
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ G K + C +C K F+ S+L++H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 25.6 bits (57), Expect = 9.0
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
K +KC +C + F HL +H H K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 25.2 bits (56), Expect = 9.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T EK YKC C KVF +++ +H
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFTQNSHLARH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 34.5 bits (80), Expect = 0.006
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 74 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 105
+ G K + C +C KAF ++L +H R
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWR 33
Score = 32.5 bits (75), Expect = 0.025
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
++ ++C C K+F +++ RH H +K
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 31.8 bits (73), Expect = 0.050
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K Y C EC K F + +H+R YH E +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 26.8 bits (60), Expect = 3.4
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 326 AHELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
+ S T +K Y+C+ C K F ++TS +H
Sbjct: 2 SSGSSGTGKKP-YECIECGKAFIQNTSLIRH 31
Score = 25.2 bits (56), Expect = 9.8
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 217 HNKEDAYVCNYCYDSFETKSTLVDH--FFHHGN-PYMCN 252
+ Y C C +F ++L+ H ++H G P +
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.007
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K + C++C KAF ++L++H R H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 27.5 bits (62), Expect = 1.8
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 383 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQ 425
+ + + ++C CG+ F L H+ IH + +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 26.7 bits (60), Expect = 2.9
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 412 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 453
K +KC++C ++F HL +H H +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 26.3 bits (59), Expect = 4.6
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ +KC C K+F +++ H H +
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHR-RIHTGYRPSGP 43
Score = 25.9 bits (58), Expect = 5.9
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + + K Y+CSEC K F + +H R H +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGPS 44
Score = 25.9 bits (58), Expect = 6.5
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKH 356
S + EK YKC C K F + T ++H
Sbjct: 3 SGSSGSGEKP-YKCSECGKAFHRHTHLNEH 31
Score = 25.5 bits (57), Expect = 8.2
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 89
+ +K YKC C + + +L H ++H G + +
Sbjct: 6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 25.5 bits (57), Expect = 9.1
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ K + C +C K F +HL H +H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.007
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 75 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G + + C +C K F S+L +H++ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 28.3 bits (64), Expect = 0.75
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
ER + C C K+F S++ H+ H +K
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHL-KRHFREKSSGP 43
Score = 28.3 bits (64), Expect = 0.96
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCT 424
+ + R + C CG+ F LI H H R K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 27.9 bits (63), Expect = 1.1
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 412 HQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
ER + C +C ++F HL +HL H + K
Sbjct: 3 SGSSGSGERPY-GCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 27.5 bits (62), Expect = 1.6
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA 88
+ ++ Y C C + + +L HLK H K +
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 27.1 bits (61), Expect = 2.5
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 327 HELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKC 368
S + E+ Y C C K F + + +H++ H R
Sbjct: 3 SGSSGSGERP-YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 33.7 bits (78), Expect = 0.007
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G +++ C +C K+F K +L+ H R H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 27.5 bits (62), Expect = 1.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 394 FRCKSCGRRFESEELLIVHQVIH 416
+ C+ CG+ F + L +H+ IH
Sbjct: 11 YECQECGKSFRQKGSLTLHERIH 33
Score = 26.0 bits (58), Expect = 5.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 25 ERKFKCEMCPKSFDHKSNIRRH 46
+R ++C+ C KSF K ++ H
Sbjct: 8 QRVYECQECGKSFRQKGSLTLH 29
Score = 25.2 bits (56), Expect = 9.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVH 471
+V+ C +C K FR + L H +H
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIH 33
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc
finger, gene regulation; NMR {Agrobacterium
tumefaciens}
Length = 87
Score = 34.8 bits (80), Expect = 0.011
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 11 EQEQQIPAQG--KSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRY 68
E+Q PA KS+Q+ C C SF +++RH+ H + YR
Sbjct: 3 NVEKQKPAVSVRKSVQDDHIVCLECGGSF---KSLKRHLTTHHSMT--------PEEYRE 51
Query: 69 KWNLKAHLKM 78
KW+L M
Sbjct: 52 KWDLPVDYPM 61
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 32.7 bits (75), Expect = 0.021
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 74 AHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVRHH 107
+ G K F C C FS LS+H R H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 26.9 bits (60), Expect = 2.7
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 186 HGRAHA--KFYRCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCN 226
G + K + C+ C RF+ D + +H R+ H+ +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKPSGPS 46
Score = 26.1 bits (58), Expect = 4.8
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 25 ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKC 59
E+ F C C F + RH +H K
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHR-RSHSGVKPSGP 45
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 37.1 bits (85), Expect = 0.022
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQVIH 416
T + ++C C S L H H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 36.0 bits (82), Expect = 0.057
Identities = 6/35 (17%), Positives = 8/35 (22%)
Query: 73 KAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ C C +L HV H
Sbjct: 169 VGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 35.2 bits (80), Expect = 0.099
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 360 HNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRS 393
+ ++CH+C+ S +LD H+ +H + +
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
Score = 33.7 bits (76), Expect = 0.25
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 274 TCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTM 333
P R + + + + L PT + Q C C + + L AH SH +
Sbjct: 147 QKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQ-CHVCSAVLFSPLDLDAHVASHGL 205
Query: 334 EKT 336
Sbjct: 206 HGN 208
Score = 32.5 bits (73), Expect = 0.62
Identities = 7/44 (15%), Positives = 12/44 (27%)
Query: 484 KVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
+ + + C C + DL H+ SH
Sbjct: 160 AIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.1 bits (72), Expect = 0.72
Identities = 6/50 (12%), Positives = 8/50 (16%)
Query: 422 KCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
+ C C + L HV H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.7 bits (71), Expect = 0.99
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 28 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 79
E T Y+C +C+ + +L AH+ H
Sbjct: 153 RIAEATSAIVSKHPARVGL-PPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.4 bits (70), Expect = 1.2
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY 227
Y+C C + + H ++ + + +
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSS 214
Score = 31.4 bits (70), Expect = 1.3
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 24 QERKFKCEMCPKSFDHKSNIRRHMAATH 51
++C +C ++ H+ A+H
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHV-ASH 203
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.5 bits (73), Expect = 0.079
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 412 HQVIHERKFHKCTQCEE-SFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHV 468
+ I ++ C C+ K + LK+H+ ++ ++F C C K R + ++ HV
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYHV 82
Score = 31.8 bits (71), Expect = 0.18
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 334 EKTLYKCLYCHKVFKKS-TSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLT-HNVR 391
+K C C V +K+ KHME+ + + CH C K S + H++ HN
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMF-TCHHCGKQLRSLAGMKYHVMANHNSL 89
Query: 392 RSF 394
S
Sbjct: 90 PSG 92
Score = 29.5 bits (65), Expect = 0.96
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 114 CKICLEI-FEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHAD 164
C C + + E L++H+++ + F C C + S M+ H+ H
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88
Score = 29.1 bits (64), Expect = 1.2
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 54 QKKYKCKLCARM-YRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 105
+ C C + + LK H++ K +FTC C K + + HV
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCKQE-MFTCHHCGKQLRSLAGMKYHVM 83
Score = 26.8 bits (58), Expect = 8.4
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 168 FKCKKCLKVFS---DEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHN 218
C C V + +K H+ + + C C K+ + M+ H HN
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHM-ENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.089
Identities = 53/342 (15%), Positives = 105/342 (30%), Gaps = 83/342 (24%)
Query: 369 HLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLI--VHQVIHERKFHKCTQC 426
++ + PS+ +L C FE+ L +H + + T
Sbjct: 67 YVSSLVEPSKVGQFDQVL----------NLCLTEFENCYLEGNDIHALAAKLLQENDT-- 114
Query: 427 EESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVF 486
K K+ +K ++ A K P + S L V E +F
Sbjct: 115 -TLVKTKELIKNYITAR------IMAKRPFDKKSNSALFRAV---GEGNAQ----LVAIF 160
Query: 487 ----VHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEK 542
+ ++ L++T + D + T ++LIR E+ T +I +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-QGLNI--LE 217
Query: 543 FIND----------------LKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHN-- 584
++ + L I++ H + T G T + Y
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 585 -----IESSQQVE---KNLNNMYNLLTTHIEYH----HSQNNIESESNQSSGFMYNDETS 632
I + E ++ +L I + ++ + S + N+E
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDS--LENNEGV 334
Query: 633 -SY----SHIKQEDDSCDTYMDDTTENSNTYLKQETPDNEDI 669
S S++ QE Y++ T N++L P + +
Sbjct: 335 PSPMLSISNLTQEQ--VQDYVNKT----NSHL----PAGKQV 366
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.092
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK 112
+ K F C +C+K FS L++H R H VK
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 25.9 bits (56), Expect = 5.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 418 RKFHKCTQCEESFKNKKHLKQHLLAHEK 445
K KC +CE++F K+L QH H +
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 25.6 bits (55), Expect = 9.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 187 GRAHAKFYRCSECEKRFATEDIMRQHFR 214
K ++C++CEK F+ + QH R
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHER 33
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.8 bits (71), Expect = 0.15
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 24 QERKFKCEMCPKSFDHKS--NIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKM 78
+ + C C K+ +++HM LQ KC+ C + ++ K L H
Sbjct: 21 ERGEAVCPTC-NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 31.5 bits (70), Expect = 0.21
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 415 IHERKFHKCTQCEE-SFKNKKHLKQHL-LAHEKVKVFHCPKCPKLFRHESHLQNHVIVHD 472
IHER C C + K LK+H+ + + C C K F+ ++ L H +
Sbjct: 19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Query: 473 ESE 475
++
Sbjct: 79 SAK 81
Score = 31.1 bits (69), Expect = 0.29
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 134 HQNRRFKCP-CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRA 189
H+ CP C + ++ H+++ ++ KC+ C K F + + H A
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 30.7 bits (68), Expect = 0.40
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 54 QKKYKCKLCARMYRYKW-NLKAHLKM-HKGPKIFTCAQCDKAFSLKSNLSKHVR 105
+ + C C + R LK H+++ K C C K F K+ L+ H
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Score = 29.1 bits (64), Expect = 1.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 334 EKTLYKCLYCHKVFKKS-TSFDKHMEHHNRNV-LHKCHLCTKAYPSEKNLDRHLLT 387
E+ C C+ V +K+ KHME + KC C K + S+ L+ H +
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 28.0 bits (61), Expect = 3.4
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 506 NCDFCH-LTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN 558
C C+ +T T L +HM ++ C C ++F + L H H+
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 27.6 bits (60), Expect = 5.6
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 273 FTCPFCQR-KYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELS 330
CP C K L+KH+E C +L KC++C++ F+++ L H ++
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDA-------LKCQHCRKQFKSKAGLNYHTMA 76
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.0 bits (77), Expect = 0.18
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 188 RAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDA 222
+ Y C+ C RF+T + +H R+ H + +
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLRSDHRDDAS 145
Score = 32.1 bits (72), Expect = 0.83
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 531 HTKHTCDICGEKFINDLKLKAHIKIIHNL 559
+ + C++C +F L H++ H
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLRSDHRD 142
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 31.7 bits (71), Expect = 0.19
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 176 VFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYH---NKEDAYVCNYCYDSF 232
+ + + Y C C + ++ H + H +YVC C
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 233 ETKSTLVDH 241
+ L +H
Sbjct: 61 KRYDALSEH 69
Score = 31.7 bits (71), Expect = 0.21
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 41 SNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKM-HKGPK---IFTCAQCDKAFSL 96
+ H ++ Y+CK C H+ H + C +C+
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 97 KSNLSKHVRHH 107
LS+H +
Sbjct: 63 YDALSEHNLKY 73
Score = 27.8 bits (61), Expect = 3.8
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 23/90 (25%)
Query: 137 RRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRC 196
++C C H+D +H + L Y C
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS-----------------------YVC 53
Query: 197 SECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
EC D + +H YH E+ +
Sbjct: 54 VECNFLTKRYDALSEHNLKYHPGEENFKLT 83
Score = 27.4 bits (60), Expect = 5.8
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 13 EQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATH---DLQKKYKCKLCARMYRYK 69
Q E ++C+ C + H+ + H L Y C C + +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 70 WNLKAH-LKMHKGPKIFTC 87
L H LK H G + F
Sbjct: 64 DALSEHNLKYHPGEENFKL 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.19
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 14/32 (43%)
Query: 653 ENSNTYLKQETPDNEDIDTTPVPESSDILAIN 684
+ S LK D + P LAI
Sbjct: 26 QAS---LKLYADD-----SAPA------LAIK 43
Score = 30.7 bits (68), Expect = 0.96
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 18/47 (38%)
Query: 541 EKFINDLK-LKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIE 586
EK LK L+A +K L+ A D A L I +E
Sbjct: 18 EK--QALKKLQASLK----LY-----------ADDSAPALAIKATME 47
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 30.9 bits (70), Expect = 0.22
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 195 RCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHC 254
RC C++ +++ + YH D +VC C F D +G MC C
Sbjct: 17 RCFSCDQFI-EGEVVSALGKTYH--PDCFVCAVCRLPFPPG----DRVTFNGKECMCQKC 69
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 29.4 bits (65), Expect = 0.31
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 534 HTCDICGEKFINDLKLKAHIKIIH 557
+ C +C +KF++ ++L++HI+ +H
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVH 31
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.5 bits (65), Expect = 0.32
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 390 VRRSFRCKSCGRRFESEELLIVHQVIH 416
+ + C+ CG+ F LLI HQ +H
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALH 35
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 31.6 bits (72), Expect = 0.33
Identities = 24/120 (20%), Positives = 32/120 (26%), Gaps = 31/120 (25%)
Query: 169 KCKKCLKVFSDEIKFHLHGRA-HAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY 227
+C C ++ + H K + C +C+ A E Y D VC
Sbjct: 5 RCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEI--------YVMVNDKPVCKP 56
Query: 228 CYDS-FETKSTLVDHFFHHGNPYMCNHCFLMFPDE------KNLRNHECTSCFTCPFCQR 280
CY C C E N H T CF C C +
Sbjct: 57 CYVKNHAVV---------------CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSK 101
Score = 30.1 bits (68), Expect = 0.93
Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 12/99 (12%)
Query: 168 FKCKKCLKVFSDEIKFHLHGRA------HAKF-YRCSECEKRFATEDI-MRQHFRNYHNK 219
F C C + + EI ++ + C C E + + ++H
Sbjct: 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHAS 90
Query: 220 EDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMF 258
+ ++C+ C + G + C
Sbjct: 91 TECFLCSCCSKCLIGQK----FMPVEGMVFCSVECKKRM 125
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 28.8 bits (65), Expect = 0.39
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEK 335
C C R F ++ L H SHT EK
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.4 bits (56), Expect = 6.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 419 KFHKCTQCEESFKNKKHLKQHLLAHEKVK 447
+ C C +F ++HLK+H +H K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 31.9 bits (72), Expect = 0.44
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 23/118 (19%)
Query: 169 KCKKCLKVFSDEIKFHLHGRA-HAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY 227
+C C +D + H++ +CS C+ + + + K +C
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLG------DIGTSSYTKSGMILCRN 60
Query: 228 CYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLR----NHECTSCFTCPFCQRK 281
Y GN C+ C P + + N CFTC C+ +
Sbjct: 61 DYIRL------------FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 106
Score = 30.7 bits (69), Expect = 0.88
Identities = 21/121 (17%), Positives = 31/121 (25%), Gaps = 18/121 (14%)
Query: 168 FKCKKCLKVFSDE-IKFHLHG----------RAHAKFYRCSECEKRF-ATEDIMRQHFRN 215
KC C D + R CS C + A+E +MR
Sbjct: 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNV 92
Query: 216 YHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTC 275
YH + C+ C + D F + C H +L +
Sbjct: 93 YH--LKCFTCSTCRNRLVPG----DRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGS 146
Query: 276 P 276
Sbjct: 147 G 147
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 30.7 bits (69), Expect = 0.48
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 507 CDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCG 566
C FC F + + H + H +I + L+ +IK+I+ +
Sbjct: 18 CLFCDRLFASAEETFSHCKLE------HQFNIDSMVHKHGLEFYGYIKLINFIRLKNPTV 71
Query: 567 DTLNNAKD 574
+ +N+ +
Sbjct: 72 EYMNSIYN 79
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 31.8 bits (73), Expect = 0.55
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 184 HLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYC 228
LHG C +C + + + + NK + C C
Sbjct: 116 ELHGSMDK--LDCLDCHETYDWSEFVED-----FNKGEIPRCRKC 153
Score = 28.7 bits (65), Expect = 5.3
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 392 RSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 426
C C ++ E + + ++ + +C +C
Sbjct: 122 DKLDCLDCHETYDWSEFV---EDFNKGEIPRCRKC 153
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 31.9 bits (73), Expect = 0.57
Identities = 9/28 (32%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 184 HLHGRAHAKFYRCSECEKRFATEDIMRQ 211
LHG C C K IM Q
Sbjct: 147 SLHGNVFE--AVCCTCNKIVKLNKIMLQ 172
Score = 28.4 bits (64), Expect = 8.7
Identities = 3/35 (8%), Positives = 11/35 (31%)
Query: 392 RSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 426
C +C + + ++++ + C
Sbjct: 153 FEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECPC 187
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.3 bits (62), Expect = 0.73
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 416 HERKFHKCTQCEESFKNKKHLKQHLLAH 443
H RK ++C++C+ +F +KHL QH H
Sbjct: 8 HTRKRYECSKCQATFNLRKHLIQHQKTH 35
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.3 bits (62), Expect = 0.77
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHH 107
K + C QC A ++K+NL+ H+R H
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKH 32
Score = 25.6 bits (55), Expect = 6.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
K YKC C+ K NL HL+ H G K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 28.2 bits (62), Expect = 0.80
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENV 111
G + F C C AF+ K+N ++H++ H + +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.0 bits (61), Expect = 1.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 187 GRAHAKFYRCSECEKRFATEDIMRQHFRNYH 217
G + K Y C C RF +D M H R++
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 27.6 bits (60), Expect = 1.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 79 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
G K ++C C F K +S HVR H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 27.6 bits (60), Expect = 1.8
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 388 HNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHK 422
+ + + C CG RF+ ++ + H H+ K
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
Score = 25.6 bits (55), Expect = 8.4
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 442 AHEKVKVFHCPKCPKLFRHESHLQNHVIVHDES 474
K + CP C F+ + + HV HD S
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.4 bits (60), Expect = 1.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 362 RNVLHKCHLCTKAYPSEKNLDRHLLTH 388
+L+ CH+C + + +E + DRH+L H
Sbjct: 6 SGLLYDCHICERKFKNELDRDRHMLVH 32
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 31.0 bits (69), Expect = 1.5
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 124 DEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCK 171
+ + + CP C R F + + +H+ K +N K +
Sbjct: 278 EHSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRR 325
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.6 bits (68), Expect = 1.6
Identities = 8/62 (12%), Positives = 20/62 (32%)
Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI 497
+ + E ++V++ K S H + + + +V + L +
Sbjct: 170 RDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Query: 498 LH 499
L
Sbjct: 230 LS 231
Score = 29.4 bits (65), Expect = 3.2
Identities = 4/49 (8%), Positives = 13/49 (26%)
Query: 59 CKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
+ + H + +G K + ++ +L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 28.6 bits (63), Expect = 6.0
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 2 SYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 56
Y +R QE + + E++ + E + D+ ++R + + Q K
Sbjct: 185 DYMKRLHSMSQET--IHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
Score = 28.6 bits (63), Expect = 6.6
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 396 CKSCGRRFESEELLIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKC 454
+ +R S +H+ + K + + E+ N + L+ + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH-------LSVLRQ 235
Query: 455 PK 456
K
Sbjct: 236 GK 237
Score = 28.2 bits (62), Expect = 8.6
Identities = 3/41 (7%), Positives = 14/41 (34%)
Query: 39 HKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 79
H + +K+ + + ++ +L+ + +
Sbjct: 191 HSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 27.2 bits (60), Expect = 1.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 85 FTCAQCDKAFSLKSNLSKHVRHHMENVKQCK 115
F C +C K F +LSKH+ H ++ +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEERR 33
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 184 HLHGRAHAKFYRCSECEKRFATEDIMRQH 212
HLHG RC+ C F E +
Sbjct: 114 HLHGSLRV--VRCTSCNNSFEVESAPKIP 140
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 29.7 bits (66), Expect = 2.0
Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 2/118 (1%)
Query: 309 QKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKC 368
KC + + + + KC + K + + H L C
Sbjct: 54 HKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDC 113
Query: 369 HLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 426
C + + + +++ H+L RR C +C E+ +H
Sbjct: 114 PQCQRPFQ-KFHINIHILKDCPRRQVSCDNCAASMAFED-KEIHDQNCPLALEHHHHH 169
Score = 27.7 bits (61), Expect = 8.3
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 11/132 (8%)
Query: 385 LLTHNVRRSFRCKSCGRRFESEELLIVHQVIHE--RKFHKCTQCEESFKNKKHLKQHLLA 442
++ +C +L + E KC K + + A
Sbjct: 45 IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQA 104
Query: 443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETS 502
H + + CP+C + F+ + H+ H++ C C + +H+ +
Sbjct: 105 HCEFALMDCPQCQRPFQ-KFHINIHILKDCPRRQVSCDNCAASMAFED-----KEIHDQN 158
Query: 503 ---EMHNCDFCH 511
+ + H
Sbjct: 159 CPLALEHHHHHH 170
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 28.2 bits (63), Expect = 2.3
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 169 KCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYC 228
C C + + + H + + C C+ D + C C
Sbjct: 17 FCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAY------ALVQHATLYCGKC 70
Query: 229 YD 230
++
Sbjct: 71 HN 72
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein,
isopeptide bond, protein binding; 2.05A {Mus musculus}
Length = 391
Score = 30.2 bits (67), Expect = 2.4
Identities = 17/158 (10%), Positives = 43/158 (27%), Gaps = 10/158 (6%)
Query: 508 DFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKA-----HIKIIHNLFTC 562
F + + + + + + L L I + L
Sbjct: 99 KFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDS 158
Query: 563 IHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQS 622
+ L+I ES + N + + + E + + Q+
Sbjct: 159 AMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQA 218
Query: 623 SGFMYNDETSSYSH-----IKQEDDSCDTYMDDTTENS 655
++ + +Y +K+E+ Y++ E +
Sbjct: 219 PSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECN 256
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 26.6 bits (58), Expect = 2.6
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 449 FHCPKCPKLFRHESHLQNHV 468
F CP CPK F L H+
Sbjct: 3 FACPACPKRFMRSDALSKHI 22
Score = 26.6 bits (58), Expect = 2.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 273 FTCPFCQRKYKIEKHLEKHIESCIQL 298
F CP C +++ L KHI++ +
Sbjct: 3 FACPACPKRFMRSDALSKHIKTAFIV 28
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.1 bits (60), Expect = 2.6
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 80 KGPKIFTC--AQCDKAFSLKSNLSKHVRHHMEN 110
K F C C K F + N+ H++ H+E+
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 29.8 bits (68), Expect = 2.6
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 184 HLHGRAHAKFYRCSECEKRFATEDIMRQ 211
LHG Y C CEK++ ED++++
Sbjct: 114 ELHGNVEE--YYCVRCEKKYTVEDVIKK 139
Score = 28.3 bits (64), Expect = 7.3
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 392 RSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 426
+ C C +++ E+ V + + C C
Sbjct: 120 EEYYCVRCEKKYTVED---VIKKLESSDVPLCDDC 151
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.6 bits (59), Expect = 2.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 391 RRSFRCKSCGRRFESEELLIVHQVIHER 418
RS+ C C R F S + L H +H R
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVHRR 31
Score = 25.9 bits (57), Expect = 6.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 338 YKCLYCHKVFKKSTSFDKHMEHHNR 362
Y C +C + F+ + + HM H R
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVHRR 31
Score = 25.5 bits (56), Expect = 7.8
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYK 339
C +C+R FR+ L H H ++ +
Sbjct: 8 TCSFCKREFRSAQALGGHMNVHRRDRARLR 37
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.4 bits (58), Expect = 3.1
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 85 FTCAQCDKAFSLKSNLSKHVRHHMEN 110
F C +C K F +L+ H+ H
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.4 bits (57), Expect = 3.2
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
K + C+ C +++++K +L+AHL++H K
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.0 bits (56), Expect = 4.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHH 107
KIFTC C+K F K +L H+R H
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIH 32
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 29.0 bits (65), Expect = 3.6
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 11/98 (11%)
Query: 139 FKCPCCERIFTSETRMRNHIDMKHAD-ENLF--KCKKCLKVFS-DEIKFHLHGRA-HAKF 193
KC C R D F KC C ++ H
Sbjct: 34 LKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC 93
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDS 231
+ C C+++ AT D Y ++ VC Y++
Sbjct: 94 FACVVCKRQLATGDEF------YLMEDSRLVCKADYET 125
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.4 bits (57), Expect = 3.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 137 RRFKCPCCERIFTSETRMRNHIDMKHAD 164
R + CP CE+ F+ + +++HI H +
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHPE 35
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 28.6 bits (64), Expect = 3.8
Identities = 22/121 (18%), Positives = 32/121 (26%), Gaps = 23/121 (19%)
Query: 166 NLFKCKKCLKVFSDEIKFHLHGRA-HAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYV 224
+L C C + D + H C C R + R + K +
Sbjct: 1 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLG------EVGRRLYYKLGRKL 54
Query: 225 CNYCYDSFETKSTLVDHFFHHGNPYMCNHC-FLMFPDEKNLR---NHECTSCFTCPFCQR 280
C Y G +C C + E +R CF C CQ+
Sbjct: 55 CRRDYLRL------------FGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQK 102
Query: 281 K 281
Sbjct: 103 H 103
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor;
electron transport; HET: HEM; 2.00A {Desulfovibrio
vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Length = 545
Score = 29.8 bits (64), Expect = 3.9
Identities = 33/284 (11%), Positives = 64/284 (22%), Gaps = 6/284 (2%)
Query: 73 KAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVK 132
+A K+ + Q D A L R +K + + +
Sbjct: 253 QAKFKVVREVPRLDRGQPDAALILPVPGKDAPREMKGTMKPVAFDHKA--HEAKANDCRT 310
Query: 133 SHQNRRFKCPCCERIFTSETRMRNHI-DMKHADENLFKCKKC---LKVFSDEIKFHLHGR 188
H R C C + + + H +++ C C H +
Sbjct: 311 CHHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSMRSCVGCHNTRVQQPTCAGCHGFIK 370
Query: 189 AHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNP 248
+C C D + N + + F + P
Sbjct: 371 PTKSDAQCGVCHVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLSARPQPKGTFDLNDIP 430
Query: 249 YMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTL 308
+ + + H + C + + T
Sbjct: 431 EKVVIGSIAKEYQPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLTP 490
Query: 309 QKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTS 352
KC C + D+ L + C K+ K + +
Sbjct: 491 PKCASCHGKPFDADRGDRPGLKAAYHQQCMGCHDRMKIEKPANT 534
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 29.6 bits (66), Expect = 3.9
Identities = 18/209 (8%), Positives = 46/209 (22%), Gaps = 15/209 (7%)
Query: 182 KFHLHGRAHAKFYRCS---ECEKRFAT-----EDIMRQHFRNYHNKEDAYVCNYCY---- 229
F A +R + RF D + + + N+ +
Sbjct: 147 SFLRKQSACNIIFRTAIVRAHHIRFNENLNTYVDWSFVLEYMKYVNKFVRIFNFPFYFRG 206
Query: 230 ---DSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEK 286
D FET + +F Y+ + + +
Sbjct: 207 EVYDPFETLTLSEQNFDILFKDYVNSFYDAIKRATNPKVREFIVTKMGNKIANEFEPTRY 266
Query: 287 HLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKV 346
+ + ++ + + + + + + E L + + K V
Sbjct: 267 DINERYQTHKDTLVELSKFLHVHLVKNQKLINKIETILLMNNETDKAFKVNQFRKTLRHV 326
Query: 347 FKKSTSFDKHMEHHNRNVLHKCHLCTKAY 375
+ ++ K
Sbjct: 327 KNIVLRRKNKERSLYDLTDKEDNVKPKTI 355
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.4 bits (57), Expect = 3.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 55 KKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
K +KC LC R K NLKAH+ H K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 25.9 bits (56), Expect = 4.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEK 335
C +CQR F + L H HT EK
Sbjct: 5 VCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.1 bits (54), Expect = 8.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 83 KIFTCAQCDKAFSLKSNLSKHVRHH 107
K + C C + F+ L +HVR H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.0 bits (61), Expect = 4.6
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 113 QCKICLEIFEDDEVLEEHVKS--HQN---RRFKCPCCERIFTSETRMRNHIDMKHADENL 167
QCK+C + + H +S H N R E ++ ++ ++
Sbjct: 34 QCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRS 93
Query: 168 FKCKKCLKVFSDEI--KFHLHGRAHAKFYRCSE 198
C C FS + + H G+ H K R E
Sbjct: 94 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE 126
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.1 bits (62), Expect = 4.9
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 153 RMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQH 212
R R +D H + + + E L G +RC C + F ++ H
Sbjct: 13 RRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGL---HRCLACARYFIDSTNLKTH 69
Query: 213 FR 214
FR
Sbjct: 70 FR 71
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 27.0 bits (60), Expect = 5.0
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 169 KCKKCLK-VFSDEIKFHLHGRA-HAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
C C + V K G+ H + CS CE+ + R++ + A+ C
Sbjct: 7 GCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGS--------RSFVPDKGAHYCV 58
Query: 227 YCYD 230
CY+
Sbjct: 59 PCYE 62
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (57), Expect = 5.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 392 RSFRCKSCGRRFESEELLIVHQVIH 416
+S +C+ CG F LI HQV+H
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLH 35
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 28.9 bits (62), Expect = 6.5
Identities = 28/252 (11%), Positives = 57/252 (22%), Gaps = 25/252 (9%)
Query: 29 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA 88
K +C S + + + ++ Y+ + + + + CA
Sbjct: 596 KLLICANSAELDPTMDAAIDCSNTEAPIYEVIVGSNKASFSADASNVTARSIVISEAKCA 655
Query: 89 QCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIF 148
C + S + C C + C
Sbjct: 656 NCHGEKADFSASHALTHAADKPDNSCGTC-----------HSAVPNTAVALADGSCVACH 704
Query: 149 TSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSEC--EKRFATE 206
+ D + + S C+ C + + +
Sbjct: 705 NGAPAHSKKPFERGFDFKVMIHQIHADTRSVRRLTTDAATFPENPANCAACHDKGQLSLA 764
Query: 207 DIMRQHFRNYHNKE---DAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKN 263
+ + E C C+ + T S ++ HF +G Y E
Sbjct: 765 TLGNKPAFLASTGEYSPTVAACASCHATTATDSAVIGHFETNGGVYNAAAGTYTPGSE-- 822
Query: 264 LRNHECTSCFTC 275
+C TC
Sbjct: 823 -------TCATC 827
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 28.3 bits (64), Expect = 7.0
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 184 HLHGRAHAKFYRCSECEKRFATEDIM 209
H+HG RCS+ + +
Sbjct: 106 HMHGELLK--VRCSQSGQVLDWTGDV 129
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 26.6 bits (59), Expect = 7.2
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 169 KCKKCLK-VFSDEIKFHLHGRA-HAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
C++C K + K G + H + C C++ T +++ K++ C
Sbjct: 7 GCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGT--------KSFIPKDNQNFCV 58
Query: 227 YCYD 230
CY+
Sbjct: 59 PCYE 62
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 28.0 bits (62), Expect = 7.5
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 11/98 (11%)
Query: 139 FKCPCCERIFTSETRMRNHIDMKHAD-ENLF--KCKKCLKVFS-DEIKFHLHGRA-HAKF 193
KC C R D F KC C ++ H
Sbjct: 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC 147
Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDS 231
+ C C+++ AT D Y ++ VC Y++
Sbjct: 148 FACVVCKRQLATGDEF------YLMEDSRLVCKADYET 179
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 28.5 bits (61), Expect = 7.8
Identities = 43/307 (14%), Positives = 72/307 (23%), Gaps = 40/307 (13%)
Query: 77 KMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQN 136
+H C C A ++ ME K C C H
Sbjct: 21 DIHLKKYNNNCRICHIALFDLRKPKRYTMLDMEKGKSCGAC------------HTGMKAF 68
Query: 137 RRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRC 196
C R + R + MK A E +F + + + +C
Sbjct: 69 SVADDSQCVRCHSGSARPVAY-RMKGAGEAVFSHEVHVPMLE---------------GKC 112
Query: 197 SECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCF- 255
C + C+ +F P N
Sbjct: 113 RTCHSNREITGGRNVTMAQMEKGKSCGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMK 172
Query: 256 ----LMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIE--SCIQLNPTTTVLKTLQ 309
F E +L ++C C T F + + + SC + +
Sbjct: 173 GVADAAFSHEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSAS 232
Query: 310 KCRYCQRMFRNEDKLTAHEL-----SHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNV 364
C C + + H + +++KC CH K +
Sbjct: 233 DCGKCHPGLKPAKLTYKTSVGEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATMADMEK 292
Query: 365 LHKCHLC 371
C +C
Sbjct: 293 GKSCGVC 299
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.5 bits (55), Expect = 8.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 422 KCTQCEESF-KNKKHLKQHLLAHEKVK 447
KC C+ F KN L++H+ AHE VK
Sbjct: 11 KCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 28.2 bits (63), Expect = 8.6
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 184 HLHGRAHAKFYRCSECEKRFATEDIMRQ 211
LHG C++C+ ++ + ++
Sbjct: 131 ELHGNMFV--EECAKCKTQYVRDTVVGT 156
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 28.5 bits (63), Expect = 8.7
Identities = 30/206 (14%), Positives = 57/206 (27%), Gaps = 34/206 (16%)
Query: 113 QCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKK 172
QC++C + H + H+ F CP ++ S+ H H + C
Sbjct: 67 QCQVCSFVV--------HKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDH 118
Query: 173 CLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 232
C L+G H + +C C M H R N V + C
Sbjct: 119 C--------GSLLYGLIH-QGMKCDTCM--------MNVHKRCVMN-----VPSLCGTDH 156
Query: 233 ETKSTLVDHFFHHGNPYM----CNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHL 288
+ + H + + L+ D L + + K +
Sbjct: 157 TERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 216
Query: 289 EKHIESCIQLNPTTTVLKTLQKCRYC 314
+ + + ++ + R
Sbjct: 217 KSSLNPEWNETFRFQLKESDKDRRLS 242
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 26.2 bits (57), Expect = 9.0
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 168 FKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQH 212
C +C ++F++ + +L G + + C + TED
Sbjct: 32 ALCVRCGQMFAEGEEMYLQG---SSIW-HPACRQAARTEDSGPSS 72
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 9.3
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 10/55 (18%)
Query: 128 EEHVKSHQNRRFKCPCCERIFTSETRMRNHI-DMKHADENLFKCKKCLKVFSDEI 181
+ N CP C + + D + C C V SD++
Sbjct: 11 AGRRGPNLNIVLTCPEC------KVYPPKIVERFSEGD--VV-CALCGLVLSDKL 56
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 28.1 bits (63), Expect = 9.7
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 184 HLHGRAHAKFYRCSECEKRFATEDIMRQ 211
LHG C++C+ ++ + ++
Sbjct: 131 ELHGNMFV--EECAKCKTQYVRDTVVGT 156
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger,
ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding
protein, USP; NMR {Homo sapiens}
Length = 126
Score = 27.0 bits (59), Expect = 9.9
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 290 KHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKK 349
+HI ++ L + CQ + E + +++ CL C
Sbjct: 8 RHIRKGLEQGNLKKALVN-VEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCG 66
Query: 350 STSFDKHMEHHNRNVLHKCH 369
S ++H H + H
Sbjct: 67 RNSQEQHALKHYLTPRSEPH 86
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 26.6 bits (59), Expect = 9.9
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 24/101 (23%)
Query: 195 RCSECEKRFATEDIMRQHF-RNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNH 253
C EC K + + R +H + + C C ++ CN
Sbjct: 7 GCVECRKPIGADSKEVHYKNRFWH--DTCFRCAKCLHPLANET----FVAKDNKIL-CNK 59
Query: 254 CFLM-------------FPDEKNLR---NHECTSCFTCPFC 278
C ++N+ CF+ P
Sbjct: 60 CTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.428
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,306,909
Number of extensions: 606551
Number of successful extensions: 6925
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5703
Number of HSP's successfully gapped: 2002
Length of query: 693
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 593
Effective length of database: 3,909,693
Effective search space: 2318447949
Effective search space used: 2318447949
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.7 bits)