RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2876
(367 letters)
>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 35.0 bits (81), Expect = 0.064
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 25/71 (35%)
Query: 59 RRSF----RCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESF---KNKKHLKQHLLAH 111
RR + C+ CG +C C+ K L+ H +
Sbjct: 429 RRGYAPLLLCRDCGYIA------------------ECPNCDSPLTLHKATGQLRCHYCGY 470
Query: 112 EKVKVFHCPKC 122
++ CP+C
Sbjct: 471 QEPIPQSCPEC 481
>gnl|CDD|220362 pfam09723, CxxC_CxxC_SSSS, Zinc ribbon domain. This entry
represents a region of about 41 amino acids found in a
number of small proteins in a wide range of bacteria.
The region usually begins with the initiator Met and
contains two CxxC motifs separated by 17 amino acids.
One protein in this entry has been noted as a putative
regulatory protein, designated FmdB. Most proteins in
this entry have a C-terminal region containing highly
degenerate sequence.
Length = 42
Score = 30.6 bits (70), Expect = 0.094
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 62 FRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 94
+RC+ CG FE V Q I + C +C
Sbjct: 6 YRCEDCGHTFE------VLQKISDDPLATCPEC 32
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 31.5 bits (72), Expect = 0.14
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 175 CDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLK--LKAHIKIIHNLFTCIH 232
C FC+ T T + + HM H I +++ DL+ L + IH C++
Sbjct: 2 CLFCNHTSDTVEENLEHMF------KSHGFFIPEREYLVDLEGLLNYLREKIHEGNECLY 55
Query: 233 CGDTLNNAKDYASHLL 248
CG + + H+
Sbjct: 56 CGKQFKSLEALRQHMR 71
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 28.9 bits (65), Expect = 0.33
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 48 NLDRHLLTHNVRRSFRCKSCGRRFES 73
NL RH+ TH + ++C CG+ F S
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.2 bits (58), Expect = 2.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 103 HLKQHLLAHEKVKVFHCPKCPKLFRH 128
+L++H+ H K + CP C K F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 31.5 bits (71), Expect = 0.72
Identities = 36/147 (24%), Positives = 49/147 (33%), Gaps = 25/147 (17%)
Query: 94 CEESFKNKKHLKQHLLA-HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFK 152
C + K LK+H A H V C K F +E L + D FK
Sbjct: 159 CHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFK 218
Query: 153 VFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICG---- 208
C FC + F D++L RH R + H CD+ G
Sbjct: 219 GHPL------------------CIFCKIYFYDDDELRRHCR--LRHEACHICDMVGPIRY 258
Query: 209 EKFINDLKLKAHIKIIHNLFTCIHCGD 235
+ F + L+AH + H T C
Sbjct: 259 QYFKSYEDLEAHFRNAHYCCTFQTCRV 285
>gnl|CDD|217969 pfam04216, FdhE, Protein involved in formate dehydrogenase
formation. The function of these proteins is unknown.
They may possibly be involved in the formation of
formate dehydrogenase.
Length = 283
Score = 30.8 bits (70), Expect = 0.93
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 90 KCTQCEESFKNKKHLKQHLLAHEK--VKVFHCPKC 122
KCT C + K L L + V+ C C
Sbjct: 207 KCTNCGST----KGLAYWSLEEGEPGVRAETCDTC 237
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of
the virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA
plus-strand. lambda1 is an Orthoreovirus core protein,
VP3 is the homologous core protein in Aquareoviruses.
Length = 1166
Score = 31.3 bits (71), Expect = 1.0
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 61 SFRCKSCGRRFESEELLIVHQ 81
S+ C C F S + L HQ
Sbjct: 73 SYVCNVCMAEFSSMDQLAEHQ 93
>gnl|CDD|215642 PLN03238, PLN03238, probable histone acetyltransferase MYST;
Provisional.
Length = 290
Score = 30.6 bits (69), Expect = 1.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 2 EKTLYKCLYCHKVFKKSTSFDKHMEH 27
LY C YC K +K S +H+
Sbjct: 45 CTKLYICEYCLKYMRKKKSLLRHLAK 70
>gnl|CDD|223277 COG0199, RpsN, Ribosomal protein S14 [Translation, ribosomal
structure and biogenesis].
Length = 61
Score = 28.0 bits (63), Expect = 1.3
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 11/37 (29%)
Query: 58 VRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 94
R RC+ CGR VI RKF C C
Sbjct: 18 GRGRNRCRRCGRP---------RGVI--RKFGLCRIC 43
>gnl|CDD|235514 PRK05580, PRK05580, primosome assembly protein PriA; Validated.
Length = 679
Score = 30.9 bits (71), Expect = 1.4
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 21/62 (33%)
Query: 64 CKSCGRRFESEELLIVHQVIHERKFHKCTQCEESF---KNKKHLKQHLLAHEKVKVFHCP 120
C+ CG E C C+ S + ++ L+ H +++ CP
Sbjct: 384 CRDCGWVAE------------------CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACP 425
Query: 121 KC 122
+C
Sbjct: 426 EC 427
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 26.7 bits (59), Expect = 1.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 117 FHCPKCPKLFRHESHLQNHVIVH 139
+ CP+C K+F+ +S L+ H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.7 bits (59), Expect = 1.7
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSH 195
+ C C F + + L HMR+H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.5 bits (56), Expect = 5.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHH 28
Y+C C KVFK ++ +HM H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.1 bits (55), Expect = 5.4
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 89 HKCTQCEESFKNKKHLKQHLLAH 111
++C +C + FK+K L++H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 28.7 bits (64), Expect = 2.1
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 91 CTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHV 136
C C F + LKQH+ E KV CP C K FR+ +HV
Sbjct: 76 CPLCLMPFSSSVSLKQHIRYTEHSKV--CPVCGKEFRNTDSTLDHV 119
Score = 27.9 bits (62), Expect = 4.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 202 HTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNI 253
+ C +C F + + LK HI+ + C CG N H+ HNI
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKHNI 125
>gnl|CDD|177300 PHA00732, PHA00732, hypothetical protein.
Length = 79
Score = 27.8 bits (62), Expect = 2.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 62 FRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHL 108
F+C CG F + L + Q H R+ H T+C K+ + L QH
Sbjct: 2 FKCPICG--FTTVTLFALKQ--HARRNHTLTKCPVCNKSYRRLNQHF 44
>gnl|CDD|197903 smart00834, CxxC_CXXC_SSSS, Putative regulatory protein.
CxxC_CXXC_SSSS represents a region of about 41 amino
acids found in a number of small proteins in a wide
range of bacteria. The region usually begins with the
initiator Met and contains two CxxC motifs separated by
17 amino acids. One protein in this entry has been
noted as a putative regulatory protein, designated
FmdB. Most proteins in this entry have a C-terminal
region containing highly degenerate sequence.
Length = 41
Score = 26.7 bits (60), Expect = 2.2
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 62 FRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 94
+RC+ CG FE V Q I + C +C
Sbjct: 6 YRCEDCGHTFE------VLQKISDDPLTTCPEC 32
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 29.7 bits (67), Expect = 2.3
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 292 GFMYNDETSSYSHIKQ----EDDSCDTYM-------DDTTENSNTYLKQETPDNEDIDTT 340
G ++ND S++ H + + Y+ + + D D T
Sbjct: 188 GMLFNDAGSNWGHAQNLLGDGKGNPGAYLGVSISNDGGVNIHFVNFNDSYIADGNKFDKT 247
Query: 341 PVPESSD 347
P+P + +
Sbjct: 248 PIPNTPN 254
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 26.4 bits (59), Expect = 2.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSH 195
H C C TF++ L H +SH
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
>gnl|CDD|236654 PRK10141, PRK10141, DNA-binding transcriptional repressor ArsR;
Provisional.
Length = 117
Score = 28.2 bits (63), Expect = 2.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 151 FKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM 192
FK+ + L L+L E+ E+ CD C + + RH+
Sbjct: 10 FKILSDETRLGIVLLLRESGELCVCDLCTALDQSQPKISRHL 51
>gnl|CDD|173875 cd08510, PBP2_Lactococcal_OppA_like, The substrate binding
component of an ABC-type lactococcal OppA-like transport
system contains. This family represents the substrate
binding domain of an ATP-binding cassette (ABC)-type
oligopeptide import system from Lactococcus lactis and
other gram-positive bacteria, as well as its closet
homologs from gram-negative bacteria.
Oligopeptide-binding protein (OppA) from Lactococcus
lactis can bind peptides of length from 4 to at least 35
residues without sequence preference. The oligopeptide
import system OppABCDEF is consisting of five subunits:
two homologous integral membrane proteins OppB and OppF
that form the translocation pore; two homologous
nucleotide-binding domains OppD and OppF that drive the
transport process through binding and hydrolysis of ATP;
and the substrate-binding protein or receptor OppA that
determines the substrate specificity of the transport
system. The dipeptide (DppA) and oligopeptide (OppA)
binding proteins differ in several ways. The DppA binds
dipeptides and some tripeptides and also is involved in
chemotaxis toward dipeptides, whereas the OppA binds
peptides of a wide range of lengths (2-35 residues) and
plays a role in recycling of cell wall peptides, which
precludes any involvement in chemotaxis. Most of other
periplasmic binding proteins are comprised of only two
globular subdomains corresponding to domains I and III
of the dipeptide/oligopeptide binding proteins. The
structural topology of these domains is most similar to
that of the type 2 periplasmic binding proteins (PBP2),
which are responsible for the uptake of a variety of
substrates such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 516
Score = 29.5 bits (67), Expect = 2.7
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 182 FTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIK 222
+T I M EEYH I G K I+D ++ K
Sbjct: 103 YTDSFKNIVGM---EEYHDGKADTISGIKKIDDKTVEITFK 140
>gnl|CDD|225357 COG2766, PrkA, Putative Ser protein kinase [Signal transduction
mechanisms].
Length = 649
Score = 29.7 bits (67), Expect = 2.8
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 217 LKAHIKIIHNLFTCIHCGD---TLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLL 270
KA IK++H L T G+ T L++ H+ ES Q KN N L
Sbjct: 266 FKAPIKVLHPLLTATQEGNYKGTEGIGAIPFDGLIVAHSNESEWQTFKNNKNNEAFL 322
>gnl|CDD|213729 TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB
family. This model represents a region of about 50
amino acids found in a number of small proteins in a
wide range of bacteria. The region begins usually with
the initiator Met and contains two CxxC motifs
separated by 17 amino acids. One member of this family
is has been noted as a putative regulatory protein,
designated FmdB (SP:Q50229, PMID:8841393 ). Most
members of this family have a C-terminal region
containing highly degenerate sequence, such as
SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in
Mycobacterium tuberculosis and
VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces
avermitilis. These low complexity regions, which are
not included in the model, resemble low-complexity
C-terminal regions of some heterocycle-containing
bacteriocin precursors [Regulatory functions, DNA
interactions].
Length = 52
Score = 26.9 bits (60), Expect = 2.8
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 61 SFRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 94
+RC +CG RFE V Q + + C +C
Sbjct: 5 EYRCTACGHRFE------VLQKMSDDPLATCPEC 32
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 25.8 bits (57), Expect = 3.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 119 CPKCPKLFRHESHLQNHVIVH 139
CP C K F +S+L+ H+ H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 25.0 bits (55), Expect = 6.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 90 KCTQCEESFKNKKHLKQHLLAH 111
KC C +SF K +LK+HL H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.0 bits (55), Expect = 6.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 175 CDFCHLTFTTDNDLIRHMRSH 195
C C +F+ ++L RH+R+H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 25.0 bits (55), Expect = 7.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 146 KCLYCFKVFVHKAHLDKHLILH 167
KC C K F K++L +HL H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 24.6 bits (54), Expect = 8.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 7 KCLYCHKVFKKSTSFDKHMEHH 28
KC C K F + ++ +H+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 28.9 bits (65), Expect = 5.9
Identities = 17/89 (19%), Positives = 22/89 (24%), Gaps = 41/89 (46%)
Query: 62 FRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 121
RC SCG E ++C C V+ CP
Sbjct: 668 RRCPSCG---------------TETYENRCPDCGT---------------HTEPVYVCPD 697
Query: 122 CPKLFRHESHLQNHVIVHDESEVHKCLYC 150
C + DES +C C
Sbjct: 698 C-----------GAEVPPDESGRVECPRC 715
>gnl|CDD|237510 PRK13795, PRK13795, hypothetical protein; Provisional.
Length = 636
Score = 28.8 bits (65), Expect = 6.1
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 204 CDICGEKF-INDLKLKAHIKIIHNLF-TCIHCGD 235
C +C ++++ + I CIHCG
Sbjct: 586 CGVCVGACPTGAIRIEEGKRKISVDEEKCIHCGK 619
>gnl|CDD|221476 pfam12234, Rav1p_C, RAVE protein 1 C terminal. This domain family
is found in eukaryotes, and is typically between 621 and
644 amino acids in length. This family is the C terminal
region of the protein RAVE (regulator of the ATPase of
vacuolar and endosomal membranes). Rav1p is involved in
regulating the glucose dependent assembly and
disassembly of vacuolar ATPase V1 and V0 subunits.
Length = 629
Score = 28.5 bits (64), Expect = 6.9
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 321 ENSNTYLKQETPDNEDIDTTPVPESSDILAINYEDKV 357
E + K E D+D T P+ ILAI + V
Sbjct: 64 EYEEKFEKDEKI--GDLDWTSTPDGQSILAIGFPHHV 98
>gnl|CDD|224487 COG1571, COG1571, Predicted DNA-binding protein containing a
Zn-ribbon domain [General function prediction only].
Length = 421
Score = 28.1 bits (63), Expect = 7.9
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 30 RNVLHKCHLCTK--AY----PSEKNLDR---HLLTHNVRRSFRCKSCGRRFES 73
R + K + Y P NL++ L R + C CG R +S
Sbjct: 310 RELARKLIPGDEITVYGSVKPGTLNLEKFQVLKLARYERVNPVCPRCGGRMKS 362
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 24.5 bits (53), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 89 HKCTQCEESFKNKKHLKQHLLAH 111
KC C +SF +K LK+HL H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.414
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,296,058
Number of extensions: 1561779
Number of successful extensions: 1801
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1784
Number of HSP's successfully gapped: 113
Length of query: 367
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 269
Effective length of database: 6,590,910
Effective search space: 1772954790
Effective search space used: 1772954790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)