RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2876
(367 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 86.0 bits (214), Expect = 5e-20
Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 5/184 (2%)
Query: 15 FKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESE 74
S+S + C C K++ +L H TH + ++C CG+ F +
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 75 ELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHL 132
+ L HQ H E K +KC +C +SF + +L+ H H K + CP+C K F +HL
Sbjct: 63 KDLTRHQRTHTGE-KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 133 QNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRH 191
+ H H + +KC C K F + +L H H T E + C C +F+ + L H
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH-TGEKPYKCPECGKSFSRRDALNVH 180
Query: 192 MRSH 195
R+H
Sbjct: 181 QRTH 184
Score = 83.3 bits (207), Expect = 4e-19
Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 3/164 (1%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCK 65
Y C C K F +S +H H +KC C K++ +K+L RH TH + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 66 SCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCP 123
CG+ F L HQ H E K + C +C +SF HL+ H H K + CP+C
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGE-KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 124 KLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 167
K F E +L H H + +KC C K F + L+ H H
Sbjct: 141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 69.4 bits (171), Expect = 4e-14
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 16/167 (9%)
Query: 77 LIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQN 134
+ + E K + C +C +SF HL +H H K + CP+C K F + L
Sbjct: 9 SVAQAALEPGE-KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTR 67
Query: 135 HVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMR 193
H H + +KC C K F +A+L H H T E + C C +F+ L H R
Sbjct: 68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-TGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 194 SHEEYHTK---HTCDICGEKFINDLKLKAHIKIIHNL---FTCIHCG 234
+ HT + C CG+ F + L H + H + C CG
Sbjct: 127 T----HTGEKPYKCPECGKSFSREDNLHTH-QRTHTGEKPYKCPECG 168
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 65.2 bits (160), Expect = 2e-13
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 62 FRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQH---LLAHEKVKV 116
C +C ++F S+ L VH H E K +C +C + + K++L +H + +V
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGE-KPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 117 FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH 163
F C C + FR L+ H++ H +KC C + F+ K L H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 61.8 bits (151), Expect = 5e-12
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRH---LLTHNVRRSF 62
+C CHK F H H +C C K Y ++NL H + + F
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 63 RCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQH 107
C C F L +H V H E +KC+ C + F KK L+ H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGE-MPYKCSSCSQQFMQKKDLQSH 113
Score = 48.7 bits (117), Expect = 2e-07
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 16/125 (12%)
Query: 110 AHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHET 169
CP C K F + +L+ H H + +C C K + K +L +H
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH---EAR 57
Query: 170 SEMH------NCDFCHLTFTTDNDLIRHMRSHEEYHTK---HTCDICGEKFINDLKLKAH 220
+ M+ C C TF +L HM S HT + C C ++F+ L++H
Sbjct: 58 NCMNRSEQVFTCSVCQETFRRRMELRLHMVS----HTGEMPYKCSSCSQQFMQKKDLQSH 113
Query: 221 IKIIH 225
+ +H
Sbjct: 114 MIKLH 118
Score = 40.6 bits (96), Expect = 9e-05
Identities = 16/86 (18%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLH------KCHLCTKAYPSEKNLDRHLLTHNVR 59
++C C K + + + +H + ++ C +C + + L H+++H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNC---MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE 92
Query: 60 RSFRCKSCGRRFESEELLIVHQV-IH 84
++C SC ++F ++ L H + +H
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHMIKLH 118
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 66.8 bits (164), Expect = 3e-13
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 14/172 (8%)
Query: 39 CTKAYPSEKNLDRHLLTHNVRRSFRCK--SCGRRFESEELLIVHQVIH--ERKFHKCTQ- 93
C AY L HL H + F CK C + F S L H + H E K C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE-KNFTCDSD 78
Query: 94 -CEESFKNKKHLKQHLLAH--EKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEVHKC- 147
C+ F K ++K+H K+ V+ C C K F+ + L+ H H + ++C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 148 -LYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM-RSHEE 197
C K F + L +H +H D C T ++H+ H++
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 61.1 bits (149), Expect = 3e-11
Identities = 44/171 (25%), Positives = 63/171 (36%), Gaps = 13/171 (7%)
Query: 6 YKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCH--LCTKAYPSEKNLDRHLLTHNVRRS 61
Y C + C + K+ H+ H C C K + S +L RH LTH ++
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 62 FRCK--SCGRRFESEELLIVHQVIH--ERKF-HKCT--QCEESFKNKKHLKQHLLAHEKV 114
F C C RF ++ + H + + C C ++FK LK H +H +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 115 KVFHC--PKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH 163
+ C C K F S L+ H VH K C V KH
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 183
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 62.7 bits (153), Expect = 4e-12
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 14/143 (9%)
Query: 39 CTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH----------ERKF 88
+ K + S KSC R F + L+ H + +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 89 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEVHK 146
+C + +SFK K L H+ H K F C P C K+F +L+ H H + K
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 147 CLY--CFKVFVHKAHLDKHLILH 167
C + C + F + + KH+ +H
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVH 145
Score = 62.7 bits (153), Expect = 4e-12
Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 16/145 (11%)
Query: 66 SCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNKKHLKQHLLAH---------EKVK 115
S G + + + + I E C+ +F L H+
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 116 VFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSEM- 172
CP+ K F+ + L NH+ VH + C + C K+F +L H H T E
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH-TGEKP 120
Query: 173 HNCDF--CHLTFTTDNDLIRHMRSH 195
C+F C F +D +HM H
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 58.1 bits (141), Expect = 2e-10
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 19/145 (13%)
Query: 13 KVFKKSTSFDKHMEH---HNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFR------ 63
+ + + C + + + L H+ +V +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 64 ---CKSCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAHEKVKV 116
C G+ F+++ L+ H +H E K C C + F ++LK H H K
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGE-KPFPCPFPGCGKIFARSENLKIHKRTHTGEKP 120
Query: 117 FHC--PKCPKLFRHESHLQNHVIVH 139
F C C + F + S + H+ VH
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 51.1 bits (123), Expect = 4e-08
Identities = 32/147 (21%), Positives = 44/147 (29%), Gaps = 22/147 (14%)
Query: 94 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH---------DESEV 144
S + K E C + F L HV +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 145 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHMRSHEEYHTK 201
+C K F K L H+ +H T E C F C F +L H R+ HT
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVH-TGEKPFPCPFPGCGKIFARSENLKIHKRT----HTG 117
Query: 202 ---HTCDI--CGEKFINDLKLKAHIKI 223
C+ C +F N K H+ +
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 50.0 bits (120), Expect = 9e-08
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 16/129 (12%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHH---------NRNVLHKCHLCTKAYPSEKNLDRHLLTH 56
C + F H+ + +C K++ ++ L H+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 57 NVRRSFRCKS--CGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLA 110
+ F C CG+ F E L +H+ H E+ F KC C+ F N K+H+
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF-KCEFEGCDRRFANSSDRKKHMHV 144
Query: 111 HEKVKVFHC 119
H K
Sbjct: 145 HTSDKSGPS 153
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 61.4 bits (150), Expect = 5e-12
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 62 FRC--KSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
C K C + F + H H + H C +C ++F LK+H L H K F C
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 120 PK--CPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILH 167
C K F + +L+ HV +H + C + C K F +L H++ H
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 53.7 bits (130), Expect = 3e-09
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 1 MEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNV 58
ME C + C K+F+ +++ KH+ H V H C C KA+ L RH L H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRV-HVCAECGKAFVESSKLKRHQLVHTG 59
Query: 59 RRSFRCKS--CGRRFESEELLIVHQVIH--ERKFHKC--TQCEESFKNKKHLKQHLLAH 111
+ F+C CG+RF + L H IH +R + C C + F +LK H+L H
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY-VCPFDGCNKKFAQSTNLKSHILTH 117
Score = 33.3 bits (77), Expect = 0.033
Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 40/116 (34%)
Query: 115 KVFHCPK--CPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 172
+ CP C K+FR S ++ H+ H VH C C K FV + L
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKL------------ 50
Query: 173 HNCDFCHLTFTTDNDLIRHMRSHEEYHT--K-HTCDI--CGEKFINDLKLKAHIKI 223
RH HT K C CG++F D L+ H++I
Sbjct: 51 ----------------KRHQLV----HTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 59.8 bits (146), Expect = 1e-11
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 48 NLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLK 105
L ++ F CK CGR F L++H+ H E + + C C ++F+ + HL+
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE-RPYTCDICHKAFRRQDHLR 62
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
H H K K F C +C K F L H +H
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 45.5 bits (109), Expect = 1e-06
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCK 65
+ C +C + F KS + H H + C +C KA+ + +L H H+ + F+C+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 66 SCGRRFESEELLIVHQVIH-ERKFHKCT 92
CG+ F L VH+ +H +
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 45.5 bits (109), Expect = 1e-06
Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 103 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 162
L + K F C C + F +L H H + + C C K F + HL
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 163 HLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSH 195
H +H + E C C F L H H
Sbjct: 64 HRYIH-SKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 27.0 bits (61), Expect = 4.1
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 157 KAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTK---HTCDICGEKFIN 213
+ + +T + C FC FT +L+ H R+H T +TCDIC + F
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH----TDERPYTCDICHKAFRR 57
Query: 214 DLKLKAHIKIIHN---LFTCIHCG 234
L+ H + IH+ F C CG
Sbjct: 58 QDHLRDH-RYIHSKEKPFKCQECG 80
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 57.0 bits (139), Expect = 1e-10
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHE 112
+ +C+ CG+ F ++ L H H K +KC C+ + + L +HL H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV-KPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 113 KVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ F C CP R+ S L H+ H
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 48.2 bits (116), Expect = 1e-07
Identities = 24/79 (30%), Positives = 34/79 (43%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCK 65
+KC C K F + HM H +KC C A +L++HL H+ R F+C+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 66 SCGRRFESEELLIVHQVIH 84
C + L VH H
Sbjct: 69 ICPYASRNSSQLTVHLRSH 87
Score = 34.7 bits (81), Expect = 0.006
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSHEEYHTK-- 201
HKC C K F K L H+ H T + C C + L +H+R H+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKHLRI----HSDER 63
Query: 202 -HTCDICGEKFINDLKLKAHIKI 223
C IC N +L H++
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRS 86
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 55.2 bits (134), Expect = 5e-10
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEV-- 144
C C + F++ HL +H L+H K + CP C F+ + + HV HD S
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 145 HKCLYCFKVFVHKAHLDKHL 164
+ C C K F HL+ H+
Sbjct: 66 YICQSCGKGFSRPDHLNGHI 85
Score = 52.1 bits (126), Expect = 5e-09
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 34 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH---ERKFHK 90
C +C K + +L+RH L+H+ + + C CG RF+ ++ + H H K +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 91 CTQCEESFKNKKHLKQHL 108
C C + F HL H+
Sbjct: 68 CQSCGKGFSRPDHLNGHI 85
Score = 44.0 bits (105), Expect = 3e-06
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSHE-EYHTKH 202
C C K+F HL++H + H + E ++C C L F + + H+RSH+ +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 203 TCDICGEKFINDLKLKAHIKIIH 225
C CG+ F L HIK +H
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 44.0 bits (105), Expect = 4e-06
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 110 AHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH-- 167
C C K+FR HL H + H + + C C F K + H+ H
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 168 ETSEMHNCDFCHLTFTTDNDLIRHMR 193
+ + C C F+ + L H++
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 26.7 bits (60), Expect = 3.8
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVL--HKCHLCTKAYPSEKNLDRHL 53
Y C C FK+ H+ H+ +V + C C K + +L+ H+
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 56.1 bits (136), Expect = 8e-10
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 18/151 (11%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEH---HNRNVLHKCHLC-----TKAYPSEKNLDRHLLTHN 57
+ C + F H+ H CH + + ++ L H+ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 58 VRRSFRCKS--CGRRFESEELLIVHQVIH--ERKFHKCTQ--CEESFKNKKHLKQHLL-A 110
+ +C C + + E L H H E+ + C C ++F N +H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY-MCEHEGCSKAFSNASDRAKHQNRT 122
Query: 111 HEKVKVFHC--PKCPKLFRHESHLQNHVIVH 139
H K + C P C K + S L+ HV
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 53.4 bits (129), Expect = 7e-09
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 16/150 (10%)
Query: 62 FRCKSCGRRFESEELLIVH---QVIH-ERKFHKCTQCE-----ESFKNKKHLKQHLLAHE 112
R C + F+S+E L+ H + IH ERK C FK + L H+ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 113 KVKVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKC--LYCFKVFVHKAHLDKHLILHE 168
K C C K + +L+ H+ H + + C C K F + + KH
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 169 TSEM-HNCDF--CHLTFTTDNDLIRHMRSH 195
++E + C C +T + L +H+++
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 47.2 bits (113), Expect = 9e-07
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 90 KCTQCEESFKNKKHLKQHLLA---HEKVKVFHC-----PKCPKLFRHESHLQNHVIVHDE 141
+ C + F +++ L H+ + H + K F C + + F+ + L H+ H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 142 SEVHKCLY--CFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHM-RSH 195
+ HKC + C K + +L HL H T E + C+ C F+ +D +H R+H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSH-TGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 196 EEYHTK-HTCDI--CGEKFINDLKLKAHIKI 223
+ K + C + C +++ + L+ H+K
Sbjct: 124 --SNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 45.3 bits (108), Expect = 4e-06
Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 27/130 (20%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVI---VHDESEVHKCLYC-----FKVFVHKAHLDKHLIL 166
C + F + L +H+ +H E + C + + F + L H+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 167 HETSEM-HNCDF--CHLTFTTDNDLIRHMRSH--------EEYHTKHTCDICGEKFINDL 215
H T E H C F C +++ +L H+RSH E + C + F N
Sbjct: 62 H-TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH-------EGCSKAFSNAS 113
Query: 216 KLKAHIKIIH 225
H H
Sbjct: 114 DRAKHQNRTH 123
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 54.4 bits (132), Expect = 1e-09
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 35 KCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQ 93
C C K++ + DRH+ H R + C CG++F+ + L+ H IH K ++C
Sbjct: 12 PCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 94 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQN 134
C + F + +H+ K + K + S +
Sbjct: 71 CAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGPSS 109
Score = 50.1 bits (121), Expect = 3e-08
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHE 112
+ + + C+ CG+ F + H +H + + C C + FK K HL H+ H
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGL-RPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 113 KVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHL 160
+K + C C K F HV ++ ++ + +
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGP 107
Score = 42.4 bits (101), Expect = 2e-05
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 90 KCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY 149
C QC +SF +K +H+ H ++ + C C K F+ + HL H+ +H + ++C
Sbjct: 12 PC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 150 CFKVFVHKAHLDKH 163
C K F+ + +H
Sbjct: 71 CAKRFMWRDSFHRH 84
Score = 38.2 bits (90), Expect = 6e-04
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 122 CPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHL 180
C K F H+S H+ +H + C C K F K HL H+ +H T + C+ C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH-TGIKPYECNICAK 73
Query: 181 TFTTDNDLIRHMRSHEEYHTKHTCDICGEKF 211
F + RH+ S + + +
Sbjct: 74 RFMWRDSFHRHVTSCTK---SYEAAKAEQNT 101
Score = 32.4 bits (75), Expect = 0.050
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCK 65
Y C C K FK HM+ H ++C++C K + + RH + +S+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH--VTSCTKSYEAA 95
Query: 66 SCGRRF 71
+
Sbjct: 96 KAEQNT 101
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 53.6 bits (130), Expect = 1e-09
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 61 SFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFH 118
SF CK CG+ F+ L H +IH R + C C + F K +K+H H K
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPY-PCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 119 CPKCPKLFRHESHLQNHVIVH 139
C C K F S+L H H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
Score = 44.7 bits (107), Expect = 1e-06
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 117 FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM-HNC 175
F C C K F+ S L H+++H ++ + C YC K F K+ + KH +H T E H C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH-TGEKPHKC 60
Query: 176 DFCHLTFTTDNDLIRHMRSH 195
C F+ ++LI H R H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 42.8 bits (102), Expect = 6e-06
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCK 65
+ C C K FK+S++ H+ H+ + C C K + + ++ +H H + +C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 66 SCGRRFESEELLIVHQVIH 84
CG+ F LI H H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 52.5 bits (127), Expect = 2e-09
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 77 LIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAH--EKVKVFHCPKCPKLFRHESHL 132
H E+ + +C C F +K H+L E V FHCP C + +S L
Sbjct: 3 SGSSGRTHSGEKPY-ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 133 QNHV 136
H+
Sbjct: 62 GVHL 65
Score = 46.4 bits (111), Expect = 4e-07
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 103 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH--DESEVHKCLYCFKVFVHKAHL 160
H K + C C F ++ H++ + C +C V K+ L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 161 DKHLILHETSE 171
HL +
Sbjct: 62 GVHLRKQHSYS 72
Score = 41.4 bits (98), Expect = 2e-05
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 159 HLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSH-EEYHTKHTCDICGEKFINDLK 216
H + E + C CH FT + H+ E K C C
Sbjct: 2 SSGSSGRTH-SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 217 LKAHIKIIH 225
L H++ H
Sbjct: 61 LGVHLRKQH 69
Score = 33.3 bits (77), Expect = 0.013
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 34 HKCHLCTKAYPSEKNLDRHLLTHN--VRRSFRCKSCGRRFESEELLIVHQVIHERKFH 89
++C++C + + H+L + F C C + L VH RK H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL----RKQH 69
Score = 33.3 bits (77), Expect = 0.015
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVL--HKCHLCTKAYPSEKNLDRHLLTH 56
Y+C CH F +S + H+ + + C C + +L HL
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Score = 31.0 bits (71), Expect = 0.11
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 188 LIRHMRSHEEYHTK---HTCDICGEKFINDLKLKAHIKIIHNL----FTCIHCGDTLNNA 240
R+H + + C IC +F +K HI H F C HC +
Sbjct: 3 SGSSGRTH----SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Query: 241 KDYASHLLIIH 251
D HL H
Sbjct: 59 SDLGVHLRKQH 69
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 52.1 bits (126), Expect = 4e-09
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 62 FRCKS--CGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVF 117
+ C C RRF L H IH + K +C C +F HL H+ H K F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 118 HCPKCPKLFRHESHLQNHVIVH 139
C C + F + H +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 43.6 bits (104), Expect = 4e-06
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 1 MEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNV 58
ME+ Y C C + F +S S +H+ H +C +C + + +L H+ TH
Sbjct: 1 MERP-YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 59 RRSFRCKSCGRRFESEELLIVHQVIH 84
+ F C CGR+F + H IH
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 42.8 bits (102), Expect = 7e-06
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 115 KVFHCPK--CPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 172
+ + CP C + F L H+ +H + +C C + F HL H+ H T E
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGEK 61
Query: 173 -HNCDFCHLTFTTDNDLIRHMRSH 195
CD C F ++ RH + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 35.1 bits (82), Expect = 0.004
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 145 HKCLY--CFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSHEEYHTK 201
+ C C + F L +H+ +H T + C C F+ + L H+R+H T
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTH----TG 59
Query: 202 ---HTCDICGEKFINDLKLKAHIKI 223
CDICG KF + K H KI
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKI 84
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 52.9 bits (128), Expect = 5e-09
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 9/114 (7%)
Query: 62 FRCK--SCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAHEKVK 115
F C C +R+ L +H H E K ++C CE F LK+H H VK
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGE-KPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 116 VFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILH 167
F C C + F HL+ H H + C + C K F L +H +H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.7 bits (117), Expect = 1e-07
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 89 HKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEV 144
C C + + HL+ H H K + C C + F L+ H H +
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 145 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHMRSH 195
+C C + F HL H H T E +C + C F ++L+RH H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTH-TGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.3 bits (116), Expect = 2e-07
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 6 YKC--LYCHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRS 61
+ C C+K + K + H H ++C C + + L RH H +
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 62 FRCKSCGRRFESEELLIVHQVIH--ERKFHKC--TQCEESFKNKKHLKQHLLAH 111
F+CK+C R+F + L H H E K C C++ F L +H H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGE-KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 37.5 bits (88), Expect = 0.001
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 120 PKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSEM-HNCD 176
P C K + SHLQ H H + ++C + C + F L +H H T C
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH-TGVKPFQCK 70
Query: 177 FCHLTFTTDNDLIRHMRSHEEYHT--K-HTCDI--CGEKFINDLKLKAHIKI 223
C F+ + L H R+ HT K +C C +KF +L H +
Sbjct: 71 TCQRKFSRSDHLKTHTRT----HTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 51.0 bits (123), Expect = 1e-08
Identities = 18/74 (24%), Positives = 30/74 (40%)
Query: 34 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQ 93
+C +C + + +L H+ TH + F C CGR+F + H+ I +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 94 CEESFKNKKHLKQH 107
EE HL+
Sbjct: 64 VEELLSKNYHLENE 77
Score = 40.9 bits (97), Expect = 3e-05
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 9/97 (9%)
Query: 114 VKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMH 173
+K F C C + F HL H+ H + C C + F +H +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPI 59
Query: 174 NCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEK 210
D + + L + + GE+
Sbjct: 60 LEDKVEELLSKNYHLENEVA-RLKKLV-------GER 88
Score = 28.6 bits (65), Expect = 0.80
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 175 CDFCHLTFTTDNDLIRHMRSHEEYHT--K-HTCDICGEKFINDLKLKAHIKIIHNL--FT 229
C C F+ + L H+R+H T K CDICG KF + K H I ++
Sbjct: 6 CRICMRNFSRSDHLTTHIRTH----TGEKPFACDICGRKFARSDERKRHRD-IQHILPIL 60
Query: 230 CIHCG 234
Sbjct: 61 EDKVE 65
Score = 25.5 bits (57), Expect = 9.8
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRH 52
+ C C + F +S +H + + + +L+
Sbjct: 32 FACDICGRKFARSDERKRHRDIQHIL-PILEDKVEELLSKNYHLENE 77
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 47.9 bits (115), Expect = 1e-07
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 77 LIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAH----EKVKVFHCPKCPKLFRHES 130
H E K + C+ C+++F+ K+ L H + F C KC K F +
Sbjct: 3 SGSSGRTHTGE-KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 131 HLQNHVIVHDESEVHKCLYCFKVF 154
+ H + +
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 46.8 bits (112), Expect = 3e-07
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 48 NLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-----ERKFHKCTQCEESFKNKK 102
+ TH + + C C + F ++LL +H + C++C ++F +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 103 HLKQHLLAHEKVKVFHCPKCPKLF 126
+ +H
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 37.5 bits (88), Expect = 5e-04
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 6 YKCLYCHKVFKKSTSFDKHME-HHNRNVLHK---CHLCTKAYPSEKNLDRHLLTHNVRRS 61
Y C +C K F++ D H + +H+ N + C C K + + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 62 FRCKSCGRRF 71
++ G
Sbjct: 76 VEGENSGPSS 85
Score = 36.7 bits (86), Expect = 0.001
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 131 HLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN-----CDFCHLTFTTD 185
+ H + + C +C K F K LD H + C C TFT
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY-HDPNFVPAAFVCSKCGKTFTRR 60
Query: 186 NDLIRHMRSH 195
N + RH +
Sbjct: 61 NTMARHADNC 70
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 48.4 bits (116), Expect = 1e-07
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 20 SFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRC--KSCGRRFESEE 75
S + +H C CTK Y +L HL TH + ++C + C RF +
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 76 LLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHE 112
L H H + F +C C SF HL H+ H+
Sbjct: 62 ELTRHYRKHTGAKPF-QCGVCNRSFSRSDHLALHMKRHQ 99
Score = 46.1 bits (110), Expect = 6e-07
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 59 RRSFRCK--SCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAHE 112
RR C C + + L H H E+ + KCT C+ F L +H H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPY-KCTWEGCDWRFARSDELTRHYRKHT 71
Query: 113 KVKVFHCPKCPKLFRHESHLQNHVIVH 139
K F C C + F HL H+ H
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 44.9 bits (107), Expect = 2e-06
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 86 RKFHKCT--QCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDE 141
R+ H C C + + HLK HL H K + C C F L H H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 142 SEVHKCLYCFKVFVHKAHLDKHLILHE 168
++ +C C + F HL H+ H+
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 43.8 bits (104), Expect = 5e-06
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 107 HLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKC--LYCFKVFVHKAHLDKHL 164
L ++ P C K++ SHL+ H+ H + +KC C F L +H
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Query: 165 ILHETSEMHNCDFCHLTFTTDNDLIRHMRSHE 196
H ++ C C+ +F+ + L HM+ H+
Sbjct: 68 RKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 38.0 bits (89), Expect = 5e-04
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 10 YCHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRCKSC 67
C KV+ KS+ H+ H +KC C + L RH H + F+C C
Sbjct: 22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 68 GRRFESEELLIVHQVIHE 85
R F + L +H H+
Sbjct: 82 NRSFSRSDHLALHMKRHQ 99
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 47.9 bits (115), Expect = 1e-07
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 56 HNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAH 111
+ CG+ + L H H E+ + C C F L +H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPY-HCDWDGCGWKFARSDELTRHYRKH 60
Query: 112 EKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ F C KC + F HL H+ H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 46.8 bits (112), Expect = 4e-07
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 84 HERKF-HKCTQCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHD 140
C +++ HLK HL H K +HC C F L H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 141 ESEVHKCLYCFKVFVHKAHLDKHLILH 167
+C C + F HL H+ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 46.0 bits (110), Expect = 6e-07
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 28 HNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCK--SCGRRFESEELLIVHQVIH- 84
C K Y +L HL TH + + C CG +F + L H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 85 -ERKFHKCTQCEESFKNKKHLKQHLLAH 111
R F +C +C+ +F HL H+ H
Sbjct: 62 GHRPF-QCQKCDRAFSRSDHLALHMKRH 88
Score = 46.0 bits (110), Expect = 6e-07
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 111 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKC--LYCFKVFVHKAHLDKHLILHE 168
C K + SHL+ H+ H + + C C F L +H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 169 TSEMHNCDFCHLTFTTDNDLIRHMRSH 195
C C F+ + L HM+ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 40.6 bits (96), Expect = 5e-05
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFR 63
C K + KS+ H+ H + C C + L RH H R F+
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 64 CKSCGRRFESEELLIVHQVIH 84
C+ C R F + L +H H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 47.0 bits (112), Expect = 2e-07
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 62 FRCKSCGRRFESEELLIVHQVIHER----KFHKCTQCEESFKNKKHLKQHLLAHEKVKVF 117
+C+ CG + L HQ H C C + F+ + H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 118 HCPKCPK 124
+
Sbjct: 68 APQESSG 74
Score = 45.5 bits (108), Expect = 8e-07
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 89 HKCTQCEESFKNKKHLKQHLLAH---EKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+C C + + K L H H F C C K F + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 42.8 bits (101), Expect = 8e-06
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILHETSEMHN---CDFCHLTFTTDNDLIRHMRSHEEYHTK 201
+C C KA L+ H H + C+FC F + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 202 HTCDICG 208
+ G
Sbjct: 68 APQESSG 74
Score = 42.0 bits (99), Expect = 1e-05
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSH--EEYHTKHTCDICGEKFINDLKLKAHIKIIH 225
C+ C T L H R H + C+ CG++F + AH H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 40.9 bits (96), Expect = 3e-05
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 117 FHCPKCPKLFRHESHLQNHVIVHDESEVHK---CLYCFKVFVHKAHLDKHLILHETSEMH 173
C C R ++ L H H E+ C +C K F + H + +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 174 NC 175
Sbjct: 68 AP 69
Score = 40.1 bits (94), Expect = 5e-05
Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 3/70 (4%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHK---CHLCTKAYPSEKNLDRHLLTHNVRRSF 62
+C C ++ S + H H V C C K + ++ H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 63 RCKSCGRRFE 72
+
Sbjct: 68 APQESSGPSS 77
Score = 40.1 bits (94), Expect = 6e-05
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 34 HKCHLCTKAYPSEKNLDRHLLTHNVR---RSFRCKSCGRRFESEELLIVHQVIH 84
+C +C + +L+ H H F C+ CG+RFE + + H+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 32.8 bits (75), Expect = 0.025
Identities = 15/66 (22%), Positives = 18/66 (27%), Gaps = 7/66 (10%)
Query: 202 HTCDICGEKFINDLKLKAHIKIIHNL------FTCIHCGDTLNNAKDYASHLLIIHNIES 255
C+ICG L H + H F C CG A+H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 256 SQQVEK 261
E
Sbjct: 67 LAPQES 72
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 47.8 bits (113), Expect = 2e-07
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 45 SEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEE------SF 98
S + + FRCK C +++ L VH + + S
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 99 KNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVI 137
K+ L + + KV C C F L H+I
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 44.4 bits (104), Expect = 4e-06
Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 103 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIV-----HDESEVHKCLYCFKVFVHK 157
K + F C C + L H+ D E K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 158 AHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEY 198
L + + ++ C +C +F + DL HM + Y
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106
Score = 44.4 bits (104), Expect = 5e-06
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 6 YKCLYCHKVFKKSTSFDKHME--HHNRNVLHKCHLCTKAY---PSEKNLDRHLLTHNVRR 60
++C C + HM H R+ H+ P +++L + ++
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 61 SFRCKSCGRRFESEELLIVH 80
+C CG FES + L VH
Sbjct: 80 VLKCMYCGHSFESLQDLSVH 99
Score = 37.4 bits (86), Expect = 0.001
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 17 KSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHL-----LTHNVRRSFRCKSCGRRF 71
+S + +C C+ AY + L H+ + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 72 ESEELLIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHL 108
+ L+ + + +K KC C SF++ + L H+
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 36.7 bits (84), Expect = 0.002
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 130 SHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLIL--HETSEMHNCDFCHLTFTTDND 187
S + + + + +C C + L H+ H + H D + +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 188 LIRHMRSHEEYHTK--HTCDICGEKFINDLKLKAHIK 222
+ + + C CG F + L H+
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 27.0 bits (59), Expect = 4.1
Identities = 7/52 (13%), Positives = 17/52 (32%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHN 57
+ S + + + KC C ++ S ++L H++
Sbjct: 53 DNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 45.6 bits (109), Expect = 4e-07
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 89 HKCTQCEESFKNKKHLKQHL--LAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
++C C + + + +H VKV+ CP C K F + ++ HV +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 42.9 bits (102), Expect = 5e-06
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 111 HEKVKVFHCPKCPKLFRHESHLQNH--VIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 167
E + C C +++ H S+ H +V+ C +CFK F K ++ H+ +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 42.2 bits (100), Expect = 7e-06
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVHQVIH---ERKFHKCTQCEESFKNKKHLKQHLLAH 111
T ++RCK C R + H V K + C C + F K ++ H+
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 112 EKV 114
K+
Sbjct: 64 HKI 66
Score = 37.1 bits (87), Expect = 5e-04
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILHETSE--MHNCDFCHLTFTTDNDLIRHMRSH 195
++C C +V+ H ++ +H + ++ C FC FT +++ H++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 36.4 bits (85), Expect = 8e-04
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 6 YKCLYCHKVFKKSTSFDKHM--EHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHN 57
Y+C C +V+ ++F +H H ++ C C K + + N+ H+ +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 175 CDFCHLTFTTDNDLIRHMRSHEEYHTK---HTCDICGEKFINDLKLKAHIKIIHNL 227
C C +T ++ RH + + + C C ++F + AH+KIIH +
Sbjct: 13 CKVCSRVYTHISNFCRHYVTS--HKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 26.7 bits (60), Expect = 2.6
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNR 30
Y C +C K F + + H++ ++
Sbjct: 41 YPCPFCFKEFTRKDNMTAHVKIIHK 65
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 45.9 bits (110), Expect = 5e-07
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 77 LIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNH 135
+ ER+ +KC +C +SF + L +H H K + C +C K F SHL H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 136 VIVH 139
VH
Sbjct: 66 HRVH 69
Score = 37.4 bits (88), Expect = 5e-04
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 103 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 162
+ + + + C +C K F H S L H H + +KC C K F+ ++HL
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 163 HLILH 167
H +H
Sbjct: 65 HHRVH 69
Score = 34.7 bits (81), Expect = 0.004
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 17 KSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEEL 76
S S + +KC C K++ +L +H TH + ++C CG+ F
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 77 LIVHQVIH 84
LI H +H
Sbjct: 62 LIGHHRVH 69
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 46.8 bits (110), Expect = 6e-07
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 33 LHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCT 92
+++C LC S H R + C C RF S EL H+ E K C
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 93 QCEESFKNKKHLKQH 107
+C +FK+ + +H
Sbjct: 74 ECMRTFKSSFSIWRH 88
Score = 39.9 bits (92), Expect = 2e-04
Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 59 RRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFH 118
+ ++C+ C + S H+ + C C F + + ++H + + K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAA-VCPYCSLRFFSPELKQEHE-SKCEYKKLT 71
Query: 119 CPKCPKLFRHESHLQNHVI-VHDE 141
C +C + F+ + H + VH++
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 39.1 bits (90), Expect = 3e-04
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 80 HQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ ++ ++C C + H V CP C F Q H
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHESKC 65
Query: 140 DESEVHKCLYCFKVFVHKAHLDKH 163
+ ++ CL C + F + +H
Sbjct: 66 EYKKL-TCLECMRTFKSSFSIWRH 88
Score = 37.6 bits (86), Expect = 0.001
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 3 KTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSF 62
K +Y+C C+ H + C C+ + S + H ++
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHESKCEYKK-L 70
Query: 63 RCKSCGRRFESEELLIVHQV 82
C C R F+S + HQV
Sbjct: 71 TCLECMRTFKSSFSIWRHQV 90
Score = 36.4 bits (83), Expect = 0.002
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 168 ETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAH-IKIIHN 226
E E++ C C+ ++ + H R C C +F + + H K +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEHESKCEYK 68
Query: 227 LFTCIHCGDTLNNAKDYASHLLIIHN 252
TC+ C T ++ H + +HN
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 29.5 bits (65), Expect = 0.55
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 194 SHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCG 234
S E + C +C K + L+ +H ++ N C +C
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCS 49
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 44.4 bits (106), Expect = 1e-06
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 77 LIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNH 135
IH K + C +C ++F L QH H K + C +C K F S L NH
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 136 VIVH 139
+H
Sbjct: 62 QRIH 65
Score = 40.1 bits (95), Expect = 5e-05
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 49 LDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNKKHLKQH 107
H+ + + C CG+ F +L+ HQ +H K +KC +C ++F L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 36.7 bits (86), Expect = 8e-04
Identities = 20/64 (31%), Positives = 26/64 (40%)
Query: 104 LKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH 163
H K + C +C K F S L H VH + +KCL C K F + L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 164 LILH 167
+H
Sbjct: 62 QRIH 65
Score = 35.9 bits (84), Expect = 0.001
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 34 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ C C KA+ L +H H + ++C CG+ F LI HQ IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 43.4 bits (103), Expect = 4e-06
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 89 HKCT--QCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEV 144
+ C C ++FK LK H +H + + C C K F S L+ H VH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 145 HKCLYCFKVFVHKAHLDKH 163
K C V KH
Sbjct: 62 KKDDSCSFVGKTWTLYLKH 80
Score = 41.1 bits (97), Expect = 3e-05
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 64 CKSCGRRFESEELLIVHQVIH--ERKFHKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHC 119
++CG+ F+ L VHQ H + + +C C++ F LK+H H
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPY-ECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 120 PKCPKLFRHESHLQNHV 136
C + + + HV
Sbjct: 65 DSCSFVGKTWTLYLKHV 81
Score = 36.8 bits (86), Expect = 0.001
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 5 LYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCH--LCTKAYPSEKNLDRHLLTHNVRR 60
+Y C + C K FKK H H + + ++C C K + L RH H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 61 SFRCKSCGRRFE-SEELLIVHQVIH 84
+ SC + L H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 34.5 bits (80), Expect = 0.006
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Query: 144 VHKCLY--CFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHMRSHEEY 198
++ C + C K F L H H T ++ + C C F+ + L RH + H Y
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Query: 199 HTKHTCDICGEKFINDLKLKAHIKIIH 225
D C H+ H
Sbjct: 60 -PCKKDDSCSFVGKTWTLYLKHVAECH 85
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 44.5 bits (104), Expect = 5e-06
Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 2/102 (1%)
Query: 7 KCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKS 66
+ K+ + R ++ + E + LL F C
Sbjct: 21 FIHVTLEELKRYHQLTPEQKRLIRAIVKTL-IHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 67 CGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHL 108
C F S L H E C C++ F + H+
Sbjct: 80 CLMPFSSSVSLKQHIRYTEHTK-VCPVCKKEFTSTDSALDHV 120
Score = 43.4 bits (101), Expect = 1e-05
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 7/120 (5%)
Query: 22 DKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRC-----KSCGRRFESEEL 76
+ ++ ++ L E+ H LT +R R + +
Sbjct: 3 ESDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSY 62
Query: 77 LIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHV 136
L C C F + LKQH+ E KV CP C K F +HV
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHV 120
Score = 41.1 bits (95), Expect = 8e-05
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 7/105 (6%)
Query: 65 KSCGRRFESEELLIVHQVIHERKFH-----KCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
K EEL HQ+ E+K K ++ LLA + + F C
Sbjct: 18 KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVC 77
Query: 120 PKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHL 164
P C F L+ H+ + ++V C C K F H+
Sbjct: 78 PLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHV 120
Score = 37.6 bits (86), Expect = 0.001
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 6/109 (5%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHK 146
H + + + ++ L+ + H P+ ES ++
Sbjct: 21 FIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ----LLDESSYLYRLLASKAISQFV 76
Query: 147 CLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 195
C C F L +H+ E +++ C C FT+ + + H+
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKK 123
Score = 33.8 bits (76), Expect = 0.031
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 3/100 (3%)
Query: 157 KAHLDKHLILHETSEMHNCD---FCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFIN 213
+ H + E + H D + + ++ C +C F +
Sbjct: 27 EELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSS 86
Query: 214 DLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNI 253
+ LK HI+ + C C + H+ HNI
Sbjct: 87 SVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 31.1 bits (69), Expect = 0.25
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLL-THNVRRS 61
+ C C F S S +H+ + C +C K + S + H+ HN+ S
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALDHVCKKHNICVS 129
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 42.5 bits (101), Expect = 6e-06
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 89 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNH 135
C C +F ++HLK+H +H K + C C + F L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 39.4 bits (93), Expect = 7e-05
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQH 107
RSF C+ C R F +E L H H E+ + C C +F + L +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPY-PCGLCNRAFTRRDLLIRH 49
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH 163
+ F C C + F + HL+ H H + + C C + F + L +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 33.6 bits (78), Expect = 0.008
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 34 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVH-QVIH 84
C +CT+A+ +++L RH +H + + C C R F +LLI H Q IH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 29.8 bits (68), Expect = 0.15
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSHEEYHTK---HTCDICGEKFINDLKLKAHIKIIH 225
C+ C F L RH RS HT + C +C F L H + IH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS----HTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 25.9 bits (58), Expect = 3.9
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRH 52
+ C C + F + +H H + C LC +A+ L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 42.5 bits (101), Expect = 7e-06
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 89 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
KC++C S +K L+ H H + F C C + S+L H+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 41.7 bits (99), Expect = 1e-05
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 62 FRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAH 111
+C C S+ L +H+ IH +R F KC C K +L +H+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPF-KCNYCSFDTKQPSNLSKHMKKF 60
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 167
C +C ++ L+ H +H KC YC ++L KH+
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 195
KC C KA L H +H T C++C ++L +HM+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 34.0 bits (79), Expect = 0.007
Identities = 11/51 (21%), Positives = 17/51 (33%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTH 56
KC C + H H + KC+ C+ NL +H+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 25.2 bits (56), Expect = 9.0
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 175 CDFCHLTFTTDNDLIRHMRSHEEYHTK---HTCDICGEKFINDLKLKAHIKI 223
C C + ++ L H R H C+ C L H+K
Sbjct: 12 CSECSYSCSSKAALRIHERI----HCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 41.7 bits (99), Expect = 1e-05
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 103 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 162
H H K + C +C FR++ +L +H VH + ++C C F A+L
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 163 HLILH 167
H +H
Sbjct: 64 HTRIH 68
Score = 39.7 bits (94), Expect = 7e-05
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 48 NLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLK 105
+ H + + ++C C F + L H+ +H E K ++C C F +LK
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE-KPYRCNICGAQFNRPANLK 62
Query: 106 QH 107
H
Sbjct: 63 TH 64
Score = 37.0 bits (87), Expect = 7e-04
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 130 SHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLI 189
H +H + + +KC C F +K +L H +H + + C+ C F +L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 190 RHMRSH 195
H R H
Sbjct: 63 THTRIH 68
Score = 30.1 bits (69), Expect = 0.21
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTH 56
YKC C F+ + H H ++C++C + NL H H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 3e-05
Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 26/178 (14%)
Query: 139 HDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN---------CDFCHLTFTTDND-- 187
H S V K + + +L+ + L +H F
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 188 -----LIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCG---DTLNN 239
+ H+++ E + F++ L+ KI H+ G +TL
Sbjct: 472 YFYSHIGHHLKNIEHPERM---TLFRMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQ 526
Query: 240 AKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQSSGFMYND 297
K Y + I N +++ + + + ++ + + ++ +
Sbjct: 527 LKFYKPY--ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 41.8 bits (97), Expect = 3e-04
Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 36/149 (24%)
Query: 156 HKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDL 215
H H+D ET E D++ + F+++
Sbjct: 3 HHHHMD-----FETGEHQYQY---------KDILSVFE---------------DAFVDNF 33
Query: 216 KLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQ------VEKNLNNMYNL 269
K + ++ + + + + L + + S Q+ VE+ L Y
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 270 LTTHIEYHHSQNNIESES-NQSSGFMYND 297
L + I+ Q ++ + + +YND
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Score = 36.0 bits (82), Expect = 0.021
Identities = 55/426 (12%), Positives = 133/426 (31%), Gaps = 129/426 (30%)
Query: 15 FKKSTSFD-KHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLT--HNVRRSFRC------- 64
F + FD K ++ +++L S++ +D H++ V + R
Sbjct: 29 FVDN--FDCKDVQDMPKSIL-----------SKEEID-HIIMSKDAVSGTLRLFWTLLSK 74
Query: 65 -KSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCP 123
+ ++F E L I ++ + + Q S + +++Q + +VF
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVF-----A 127
Query: 124 KLF--RHESHLQNHVIVHDESEVHKCLYCFK----VFVH------KAHL------DKHLI 165
K R + +L+ + + L + V + K + +
Sbjct: 128 KYNVSRLQPYLK----------LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 166 LHETSEMH-----NCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAH 220
++ NC+ L+ + + + H+ +I + I+ ++ +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAE-- 233
Query: 221 IKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTH----IEY 276
+ L +K Y + LL++ N+++++ + LLTT ++
Sbjct: 234 ---LRRLLK----------SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 277 HHSQNNIESESNQSSGFMYNDET----SSYSHIKQED---DSCDTY-------------M 316
+ + S + DE Y + +D + T
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 317 DDTTENSNTY------------LKQETPDN-----EDI----DTTPVPESSDILAINYED 355
T +N L P + + + +P +L++ + D
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--ILLSLIWFD 398
Query: 356 KVKDEP 361
+K +
Sbjct: 399 VIKSDV 404
Score = 29.8 bits (66), Expect = 1.8
Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 31/115 (26%)
Query: 277 HHSQNNIESESNQSSGFMYNDETSSYSHIKQEDDSCDTYMDDTTENSNTYLKQETPDNED 336
HH ++++ E+ + + Y D S + ++ C D + + L +E + +
Sbjct: 1 HHHHHHMDFETGEHQ-YQYKDILSVFEDAFVDNFDC----KDVQDMPKSILSKE--EIDH 53
Query: 337 IDTTPVPESS---------------------DILAINYE---DKVKDEPNIRTVI 367
I + S ++L INY+ +K E +++
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 40.2 bits (95), Expect = 5e-05
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 62 FRCKS--CGRRFESEELLIVHQVI---HERKFHKCTQ--CEESFKNKKHLKQHLLAHEKV 114
C CGR F + + L H+ H++ F C + C +SF KKHLK+H+ H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSF-SCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 115 KVFHCPKCPKLF 126
+ + C
Sbjct: 67 RDYICEFSGPSS 78
Score = 39.5 bits (93), Expect = 1e-04
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 84 HERKFHKCT--QCEESFKNKKHLKQHL-LAHEKVKVFHCP--KCPKLFRHESHLQNHVIV 138
C C F N+++L H H K F CP C K F + HL+ H+ +
Sbjct: 4 GSSGM-PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 139 HDESEVHKCLYCFKVF 154
H ++ + C +
Sbjct: 63 HSDTRDYICEFSGPSS 78
Score = 34.1 bits (79), Expect = 0.009
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 6 YKCLY--CHKVFKKSTSFDKHM-EHHNRNVLHKC--HLCTKAYPSEKNLDRHLLTHNVRR 60
C + C ++F + H H C C K++ +K+L H+ H+ R
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 61 SFRCKSCGRRF 71
+ C+ G
Sbjct: 68 DYICEFSGPSS 78
Score = 31.0 bits (71), Expect = 0.11
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 150 CFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHMRSHEEYHTK---HT 203
C ++F ++ +L+ H + +C C +F L HM+ H+ +
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL----HSDTRDYI 70
Query: 204 CDICGEKF 211
C+ G
Sbjct: 71 CEFSGPSS 78
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 39.2 bits (92), Expect = 1e-04
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 77 LIVHQVIHERKFHKCT--QCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQN 134
L+ + V R + C C+ F L +H+ H K F C C + F HL
Sbjct: 9 LLNYVVPKMRPY-ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 135 HVIVH 139
H+ H
Sbjct: 68 HIRTH 72
Score = 35.4 bits (82), Expect = 0.002
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 103 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 162
+L +++ + C + F L H+ +H + +C C + F HL
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 163 HLILH 167
H+ H
Sbjct: 68 HIRTH 72
Score = 30.0 bits (68), Expect = 0.19
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 159 HLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLK 218
+L +++ + C F+ ++L RH+R H C IC F L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLT 66
Query: 219 AHIKI 223
HI+
Sbjct: 67 THIRT 71
Score = 29.6 bits (67), Expect = 0.24
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 130 SHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLI 189
++L N+V+ C + F L +H+ +H + C C F+ + L
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 190 RHMRSH 195
H+R+H
Sbjct: 67 THIRTH 72
Score = 29.2 bits (66), Expect = 0.42
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 39 CTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
C + + L RH+ H ++ F+C+ C R F + L H H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 36.8 bits (85), Expect = 4e-04
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 85 ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKC 122
RK C C + F++ HL +H L+H K +
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 32.2 bits (73), Expect = 0.019
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 34 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSC 67
C +C K + +L+RH L+H+ + +
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.0 bits (62), Expect = 0.64
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K C C K+FR HL H + H
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSH 35
Score = 27.6 bits (61), Expect = 0.88
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 167 HETSEMHNCDFCHLTFTTDNDLIRHMRSH 195
T + C+ C F L RH SH
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 27.6 bits (61), Expect = 0.94
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQC 94
+ R+ C+ CG+ F L H++ H K +
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 25.3 bits (55), Expect = 6.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILH 167
C C K+F HL++H + H
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSH 35
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 37.8 bits (88), Expect = 4e-04
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 130 SHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSEMHNCDF--CHLTFTTD 185
S I H C + C K + +HL H H + +C + C F
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 186 NDLIRHMRSH 195
++L RH R+H
Sbjct: 63 DELSRHRRTH 72
Score = 34.3 bits (79), Expect = 0.006
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 18 STSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRC--KSCGRRFES 73
S+ +R H C C K Y +L H TH + F C K C RRF
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 74 EELLIVHQVIH 84
+ L H+ H
Sbjct: 62 SDELSRHRRTH 72
Score = 30.8 bits (70), Expect = 0.096
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 86 RKFHKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVH 139
+ H C+ C +++ HLK H H K F C C + F L H H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 25.4 bits (56), Expect = 7.4
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 6 YKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTH 56
+ C + C K + KS+ H H C C + + L RH TH
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 35.8 bits (82), Expect = 0.001
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 89 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ C +C K LK+H+ H V+ +HC C F+ + +L H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 35.1 bits (80), Expect = 0.002
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 62 FRCKSCGRRFESEELLIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVK 115
+ C+ CG R + +L H H + + CT C SFK K +L +H+ + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 35.1 bits (80), Expect = 0.002
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTH 56
Y C C KK + KH+ H + C C ++ ++ NL +H+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 34.3 bits (78), Expect = 0.005
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 34 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ C C L +H+ TH R + C C F+++ L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 33.9 bits (77), Expect = 0.005
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 195
+ C C + L KH+ H ++C +C+ +F T +L +HM+S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 33.5 bits (76), Expect = 0.007
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 117 FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 167
+ C +C + S L+ H+ H + + C YC F K +L KH+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 35.7 bits (82), Expect = 0.003
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVH-QVIH----ERKFHKC-----TQCEESFKNKKHL 104
+ S KSC R F + L+ H + H E+ H C + +SFK K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 105 KQHLLAHEKVKVFHC 119
H+ H K
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 33.4 bits (76), Expect = 0.020
Identities = 14/86 (16%), Positives = 20/86 (23%), Gaps = 21/86 (24%)
Query: 111 HEKVKVFHCPKCPKLFRHESHLQNHV-IVHDESEVHKCLYCFKVFVHKAHLDKHLILHET 169
E C + F L HV + H C+
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW----------------- 62
Query: 170 SEMHNCDFCHLTFTTDNDLIRHMRSH 195
C +F L+ H+R H
Sbjct: 63 ---EECPREGKSFKAKYKLVNHIRVH 85
Score = 29.9 bits (67), Expect = 0.30
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 166 LHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHT-----------CDICGEKFIND 214
+ E C TF+T ++L+ H+ H C G+ F
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTME---HVGGPEQNNHVCYWEECPREGKSFKAK 75
Query: 215 LKLKAHIKI 223
KL HI++
Sbjct: 76 YKLVNHIRV 84
Score = 29.2 bits (65), Expect = 0.68
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 72 ESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHL----LAHEKVKVF-----HCPKC 122
++ L + + C+ +F L H+ + + CP+
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE 68
Query: 123 PKLFRHESHLQNHVIVH 139
K F+ + L NH+ VH
Sbjct: 69 GKSFKAKYKLVNHIRVH 85
Score = 27.2 bits (60), Expect = 3.1
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 9/68 (13%)
Query: 6 YKCLYCHKVFKKSTSFDKHME----HHNRNVLHKCH-----LCTKAYPSEKNLDRHLLTH 56
C + F H+ H C+ K++ ++ L H+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 57 NVRRSFRC 64
+S
Sbjct: 86 TGEKSGPS 93
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 34.6 bits (79), Expect = 0.004
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 17 KSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEEL 76
S S K + H + KC C + T + R++ C+ C + E
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAA 54
Query: 77 LIVHQVIH 84
L +
Sbjct: 55 LNKDEGNE 62
Score = 33.1 bits (75), Expect = 0.017
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 103 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 162
+ H + C KC +F S L + C C K +A L+K
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 163 HLILH 167
Sbjct: 58 DEGNE 62
Score = 32.3 bits (73), Expect = 0.033
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 130 SHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLI 189
+H KC C +F+ ++ L + + C+ C + L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALN 56
Query: 190 RHMRSH 195
+ +
Sbjct: 57 KDEGNE 62
Score = 32.3 bits (73), Expect = 0.035
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 45 SEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHL 104
S + + H RS +C CG F L RK C +C + + L
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLS------RRKTPMCEKCRKDSCQEAAL 55
Query: 105 KQHLLAHEKVKVF 117
+ K
Sbjct: 56 NKDEGNESGKKTS 68
Score = 26.2 bits (57), Expect = 5.0
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTH 56
KC C +F + ++ + C C K E L++
Sbjct: 19 QKCSKCGIIFIRRSTLSRRKT-------PMCEKCRKDSCQEAALNKDEGNE 62
Score = 25.4 bits (55), Expect = 8.2
Identities = 10/66 (15%), Positives = 16/66 (24%), Gaps = 8/66 (12%)
Query: 158 AHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKL 217
K +H C C + F + L R C+ C + + L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAAL 55
Query: 218 KAHIKI 223
Sbjct: 56 NKDEGN 61
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 36.8 bits (84), Expect = 0.012
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVHQVIH 84
T + ++C C S L H H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 34.8 bits (79), Expect = 0.052
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 28 HNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRS 61
+ ++CH+C+ S +LD H+ +H + +
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
Score = 32.1 bits (72), Expect = 0.34
Identities = 7/44 (15%), Positives = 12/44 (27%)
Query: 152 KVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 195
+ + + C C + DL H+ SH
Sbjct: 160 AIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.7 bits (71), Expect = 0.39
Identities = 6/50 (12%), Positives = 8/50 (16%)
Query: 90 KCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ C C + L HV H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 34.1 bits (77), Expect = 0.013
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 80 HQVIHERKFHKCTQCEE-SFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHV 136
+ I ++ C C+ K + LK+H+ ++ ++F C C K R + ++ HV
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYHV 82
Score = 32.9 bits (74), Expect = 0.028
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 2 EKTLYKCLYCHKVFKKS-TSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLT-HNVR 59
+K C C V +K+ KHME+ + + CH C K S + H++ HN
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMF-TCHHCGKQLRSLAGMKYHVMANHNSL 89
Query: 60 RSF 62
S
Sbjct: 90 PSG 92
Score = 27.1 bits (59), Expect = 3.4
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 59 RRSFRCKSCGR-RFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLA 110
+ S C +C ++ E L H +++ C C + ++ +K H++A
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMA 84
Score = 26.4 bits (57), Expect = 7.2
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 105 KQHLLAHEKVKVFHCPKCPKLFRHE-SHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH 163
+Q L CP C + R L+ H+ + E+ C +C K A + H
Sbjct: 23 EQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYH 81
Query: 164 L 164
+
Sbjct: 82 V 82
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 32.2 bits (72), Expect = 0.050
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 83 IHERKFHKCTQCEE-SFKNKKHLKQHL-LAHEKVKVFHCPKCPKLFRHESHLQNHVIVHD 140
IHER C C + K LK+H+ + + C C K F+ ++ L H +
Sbjct: 19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Query: 141 ESE 143
++
Sbjct: 79 SAK 81
Score = 30.3 bits (67), Expect = 0.32
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 2 EKTLYKCLYCHKVFKKS-TSFDKHMEHHNRNV-LHKCHLCTKAYPSEKNLDRHLLT 55
E+ C C+ V +K+ KHME + KC C K + S+ L+ H +
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 28.8 bits (63), Expect = 0.99
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 174 NCDFCH-LTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN 226
C C+ +T T L +HM ++ C C ++F + L H H+
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 26.8 bits (58), Expect = 4.7
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 115 KVFHCPKCPKLFRHESH-LQNHVIV-HDESEVHKCLYCFKVFVHKAHLDKHLI 165
CP C + R L+ H+ V + KC +C K F KA L+ H +
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.053
Identities = 53/342 (15%), Positives = 105/342 (30%), Gaps = 83/342 (24%)
Query: 37 HLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLI--VHQVIHERKFHKCTQC 94
++ + PS+ +L C FE+ L +H + + T
Sbjct: 67 YVSSLVEPSKVGQFDQVL----------NLCLTEFENCYLEGNDIHALAAKLLQENDT-- 114
Query: 95 EESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVF 154
K K+ +K ++ A K P + S L V E +F
Sbjct: 115 -TLVKTKELIKNYITAR------IMAKRPFDKKSNSALFRAV---GEGNAQ----LVAIF 160
Query: 155 ----VHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEK 210
+ ++ L++T + D + T ++LIR E+ T +I +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-QGLNI--LE 217
Query: 211 FIND----------------LKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHN-- 252
++ + L I++ H + T G T + Y
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 253 -----IESSQQVE---KNLNNMYNLLTTHIEYH----HSQNNIESESNQSSGFMYNDETS 300
I + E ++ +L I + ++ + S + N+E
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDS--LENNEGV 334
Query: 301 -SY----SHIKQEDDSCDTYMDDTTENSNTYLKQETPDNEDI 337
S S++ QE Y++ T N++L P + +
Sbjct: 335 PSPMLSISNLTQEQ--VQDYVNKT----NSHL----PAGKQV 366
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 31.0 bits (71), Expect = 0.054
Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 111 HEKVKVFHCPKCPKLFRHESHLQNHV-IVHDESEVHKCLYCFKVF 154
K + C C K F HL H+ VH HKC
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 31.0 bits (71), Expect = 0.055
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVH-QVIH--ERKFHKCTQCEESFKN 100
+ +V + + C+SCG+ F + L H + +H ER KC +
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPH-KCQVWVSGPSS 53
Score = 31.0 bits (71), Expect = 0.062
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 80 HQVIHER-KFHKCTQCEESFKNKKHLKQHL-LAHEKVKVFHCPKCPKLF 126
K + C C + F HL H+ H + C
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 27.2 bits (61), Expect = 1.3
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEH-HNRNVLHKCHLCTKAYPS 45
Y C C K F + + H++ H HKC + S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 26.8 bits (60), Expect = 1.6
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 34 HKCHLCTKAYPSEKNLDRHL-LTHNVRRSFRCKSCGRRFES 73
+ C C K + +L+ H+ H R +C+ S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 25.6 bits (57), Expect = 4.1
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 6/53 (11%)
Query: 194 SHEEYHTKH---TCDICGEKFINDLKLKAHIKIIHNL---FTCIHCGDTLNNA 240
S + C CG+ F L HIK +H C ++
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.064
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 14/32 (43%)
Query: 321 ENSNTYLKQETPDNEDIDTTPVPESSDILAIN 352
+ S LK D + P LAI
Sbjct: 26 QAS---LKLYADD-----SAPA------LAIK 43
Score = 31.1 bits (69), Expect = 0.31
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 18/47 (38%)
Query: 209 EKFINDLK-LKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIE 254
EK LK L+A +K L+ A D A L I +E
Sbjct: 18 EK--QALKKLQASLK----LY-----------ADDSAPALAIKATME 47
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 30.6 bits (69), Expect = 0.067
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERK 87
+ F+C C R F L+ H+ H RK
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 26.7 bits (59), Expect = 1.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 90 KCTQCEESFKNKKHLKQHLLAH 111
KC++C+ F + +L QH H
Sbjct: 14 KCSKCDRVFTQRNYLVQHERTH 35
Score = 26.4 bits (58), Expect = 1.9
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ F C KC ++F ++L H H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (69), Expect = 0.088
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + R RC CG+ F I H+ IH
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 24.4 bits (54), Expect = 9.3
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ + C C K F S+ H +H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.095
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQ 93
+ + + + C CG+ F L+ HQ IH K +
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 7.0
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C C K F + L H +H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 24.8 bits (55), Expect = 7.7
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 107
K + C C ++F L +H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 29.8 bits (66), Expect = 0.12
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 202 HTCDICGEKFINDLKLKAHIKIIH 225
+ C +C +KF++ ++L++HI+ +H
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 29.8 bits (68), Expect = 0.12
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + F C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 25.5 bits (57), Expect = 4.0
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +C +C +SF L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.13
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C CG+ F S+ LI+H H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 25.2 bits (56), Expect = 5.7
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K + C++C ++F +K +L H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.9 bits (66), Expect = 0.13
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 58 VRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + C+ CG+ F LLI HQ +H
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 29.4 bits (67), Expect = 0.14
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C C + F + LIVHQ H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 25.6 bits (57), Expect = 3.5
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K + C+QC ++F K L H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.15
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + C+ CG+ F LIVHQ IH
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 26.3 bits (59), Expect = 1.9
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 121
K H+C +C +SF L H H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.21
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ R + C CG+ F + LI+HQ IH
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 24.8 bits (55), Expect = 7.6
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 107
+ ++C++C ++F K L H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 29.2 bits (66), Expect = 0.21
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + C CG+ F L VHQ
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.25
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + F C C + F ++ LIVHQ H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 25.1 bits (56), Expect = 5.7
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 80 HQVIHER-KFHKCTQCEESFKNKKHLKQH 107
K +C++C+++F K +L H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.0 bits (66), Expect = 0.26
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ +R + C CG+ F+++ LI H+ H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 25.2 bits (56), Expect = 6.1
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ + + C +C K F+ +S L H H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 28.7 bits (65), Expect = 0.26
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHE-RKFHKCTQ 93
+ + + CK CG+ F L+ HQ +H K +
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 7.3
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K + C +C +SF+ L +H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.7 bits (63), Expect = 0.29
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 84 HERKFHKCTQCEESFKNKKHLKQHLLAH 111
H RK ++C++C+ +F +KHL QH H
Sbjct: 8 HTRKRYECSKCQATFNLRKHLIQHQKTH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.30
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ R + C CG+ F LI HQ IH
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 25.9 bits (58), Expect = 3.0
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
+ + CT C ++F ++ +L +H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.30
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C CG+ F L HQVIH
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 25.9 bits (58), Expect = 2.6
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ VK + C +C K F S L H ++H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.33
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQ 93
+ ++C C + F + L+VHQ +H R K +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 27.5 bits (62), Expect = 0.93
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
+KC+QCE+SF K L H H + K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 28.4 bits (64), Expect = 0.36
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C C F L+ HQ +H
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 27.3 bits (61), Expect = 0.85
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K + C +C + F + L H +H
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMH 33
Score = 25.0 bits (55), Expect = 7.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 87 KFHKCTQCEESFKNKKHLKQH 107
K + C +C+E+F + L QH
Sbjct: 9 KPYSCAECKETFSDNNRLVQH 29
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 30.3 bits (68), Expect = 0.39
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 175 CDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCG 234
C FC F + + H + H +I + L+ +IK+I+ +
Sbjct: 18 CLFCDRLFASAEETFSHCKLE------HQFNIDSMVHKHGLEFYGYIKLINFIRLKNPTV 71
Query: 235 DTLNNAKD 242
+ +N+ +
Sbjct: 72 EYMNSIYN 79
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 28.3 bits (64), Expect = 0.40
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + +RC CG+ F + LIVH +H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 26.8 bits (60), Expect = 1.4
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAH 111
K ++C QC ++F K L H+ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.41
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + F+C CG+ + L HQ +H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 27.5 bits (62), Expect = 0.72
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 121
K KC +C +S+ + HL QH H K
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.41
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + +C CG+ F + LI+HQ H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 25.6 bits (57), Expect = 4.2
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 80 HQVIHER-KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
K KCT+C ++F K L H H K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.42
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + +S +C CGR F + L HQ IH
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K H+C +C F K HL QH
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 25.2 bits (56), Expect = 4.9
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K C +C + F +SHL H +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 25.2 bits (56), Expect = 5.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILH 167
H+C C + F K+HL++H +H
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.43
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHE-RKFHKCTQ 93
+ + + F+C+ CG+RF L HQ +H K +
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 3.1
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K KC +C + F L H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.44
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + CK C + F + L HQ H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
K ++C C ++F K HL QH H K
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 9.8
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C C K F ++HL H H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.7 bits (71), Expect = 0.44
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 199 HTKHTCDICGEKFINDLKLKAHIKIIHNL 227
+ + C++C +F L H++ H
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLRSDHRD 142
Score = 29.8 bits (66), Expect = 1.8
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 61 SFRCKSCGRRFESEELLIVHQVIHERKFHK 90
S+ C C RF + L H R H+
Sbjct: 116 SYVCNVCNARFSTMSAL----SEHLRSDHR 141
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.45
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ R +C CG+ F LI HQ IH
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 121
+ HKC +C +SF HL QH H K
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.45
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + F+CK CG+ F L H IH
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 27.1 bits (61), Expect = 1.0
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K KC +C ++F+ HL H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 25.2 bits (56), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K F C +C K FR HL +H+ +H
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 28.2 bits (64), Expect = 0.45
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K + C C FRH L++H+ +H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 26.3 bits (59), Expect = 2.2
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C+ CG RF + L H IH
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 25.2 bits (56), Expect = 4.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 89 HKCTQCEESFKNKKHLKQHLLAH 111
+ C C F++ + LK HL H
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
Score = 24.8 bits (55), Expect = 6.3
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHH 28
Y C C F+ + H+ H
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.46
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCT 92
+ + R + C CG+ F LI H H R K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 28.3 bits (64), Expect = 0.50
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 80 HQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
ER + C +C ++F HL +HL H + K
Sbjct: 3 SGSSGSGERPY-GCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 25.2 bits (56), Expect = 6.4
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKC 147
+ + C +C K F SHL H+ H +
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 27.9 bits (63), Expect = 0.48
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C++CG RF L H +IH
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 26.7 bits (60), Expect = 1.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K + C C F +HL+ HV++H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 25.6 bits (57), Expect = 3.3
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 80 HQVIHER-KFHKCTQCEESFKNKKHLKQHLLAH 111
K +KC C F HL+ H+L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 25.6 bits (57), Expect = 4.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILH 167
+KC C FV AHL H+++H
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIH 34
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.9 bits (69), Expect = 0.48
Identities = 8/62 (12%), Positives = 20/62 (32%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI 165
+ + E ++V++ K S H + + + +V + L +
Sbjct: 170 RDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Query: 166 LH 167
L
Sbjct: 230 LS 231
Score = 29.4 bits (65), Expect = 1.8
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 64 CKSCGRRFESEELLIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKC 122
+ +R S +H+ + K + + E+ N + L+ + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH-------LSVLRQ 235
Query: 123 PK 124
K
Sbjct: 236 GK 237
Score = 27.1 bits (59), Expect = 8.0
Identities = 3/36 (8%), Positives = 10/36 (27%)
Query: 49 LDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
H + + + + ++ E L +
Sbjct: 196 ETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.49
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +KC +C + F+ HL +H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 27.4 bits (62), Expect = 0.79
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F L HQ+IH
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 25.5 bits (57), Expect = 4.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K + C +C K+FR SHL H ++H
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.51
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + C CG+ F + LI HQ H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 25.5 bits (57), Expect = 3.8
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 79 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
++C +C ++F K L H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.8 bits (61), Expect = 0.51
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 30 RNVLHKCHLCTKAYPSEKNLDRHLLTH 56
+L+ CH+C + + +E + DRH+L H
Sbjct: 6 SGLLYDCHICERKFKNELDRDRHMLVH 32
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 27.9 bits (63), Expect = 0.52
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ ++ F C CG+ F ++ L+ HQ IH
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 26.7 bits (60), Expect = 1.6
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
+K +CT C +SF+ K +L H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 27.9 bits (63), Expect = 0.54
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + + C CG+ F + LLIVH+ H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.55
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + F+C+ CG+ F + HQ H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 24.8 bits (55), Expect = 6.9
Identities = 6/29 (20%), Positives = 8/29 (27%), Gaps = 1/29 (3%)
Query: 80 HQVIHER-KFHKCTQCEESFKNKKHLKQH 107
K KC +C + F H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 24.4 bits (54), Expect = 9.7
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K F C +C K F S +H H
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 27.9 bits (63), Expect = 0.55
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + C CG+ F ++ LI HQ H
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.55
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 25.6 bits (57), Expect = 4.1
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 121
K ++C QC ++F + L H H K
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 25.2 bits (56), Expect = 5.3
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C +C K F S L H +H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (63), Expect = 0.57
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 62 FRCKSCGRRFESEELLIVHQVIH 84
F C C + F S+ L+VHQ H
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTH 33
Score = 26.0 bits (58), Expect = 2.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
K C+ CE++F +K +L H H + K
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.58
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F L+ H+ IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 25.5 bits (57), Expect = 3.9
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +KC +C + F HL +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.58
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 25.2 bits (56), Expect = 6.3
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
K +KC +C ++F L +H H K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.58
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C +C K+FRH S+L H +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 27.9 bits (63), Expect = 0.62
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 26.3 bits (59), Expect = 2.4
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 107
K +KC +C + F++ +L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.59
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C +C K FR S+L H ++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 27.5 bits (62), Expect = 0.79
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F + L HQVIH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 25.6 bits (57), Expect = 4.1
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 121
K +KC +C ++F+ +L H + H K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 27.9 bits (63), Expect = 0.61
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + CK CG+ F LI HQ +H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 25.9 bits (58), Expect = 3.0
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K ++C +C ++F HL QH
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.62
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ E K + C +C K F L H I H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 27.9 bits (63), Expect = 0.62
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F L H + H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 25.2 bits (56), Expect = 6.0
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
E K ++C++C +SF L QH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.62
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C+ CG+ F + L HQ IH
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 25.6 bits (57), Expect = 3.6
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K + C +C ++F + L++H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 25.6 bits (57), Expect = 4.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 107 HLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K ++C +C K F H+S LQ H +H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.62
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + +S C CG+ F L +HQ +H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 26.0 bits (58), Expect = 2.7
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 80 HQVIHER-KFHKCTQCEESFKNKKHLKQH 107
K H C +C ++F L+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 24.9 bits (55), Expect = 7.0
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 107 HLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K C +C K F + S L+ H VH
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.64
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + CK CG+ F L+ H+ +H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 24.8 bits (55), Expect = 8.1
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K + C +C +SF L +H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.8 bits (63), Expect = 0.64
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C CG+ F S+ LI+H H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 25.9 bits (58), Expect = 3.3
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 107
K + C +C ++F++K +L H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 24.4 bits (54), Expect = 9.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K + C +C K FR +S+L H H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.65
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F + L +HQ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 26.0 bits (58), Expect = 2.9
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 121
K +KC +C ++F+ + L H H K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 6.5
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C +C K FR S L H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.66
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C CG+ F + L VHQ IH
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 24.8 bits (55), Expect = 7.3
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 79 VHQVIHER-KFHKCTQCEESFKNKKHLKQH 107
K ++C+ C +SF K L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 27.5 bits (62), Expect = 0.66
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 62 FRCKSCGRRFESEELLIVHQVIH 84
+ C+ CG+ F + L +H+ IH
Sbjct: 11 YECQECGKSFRQKGSLTLHERIH 33
Score = 25.6 bits (57), Expect = 4.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
+V+ C +C K FR + L H +H
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIH 33
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.0 bits (61), Expect = 0.68
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 56 HNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHK 90
+ + + C CG RF+ ++ + H H+ K
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
Score = 26.0 bits (56), Expect = 3.2
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 110 AHEKVKVFHCPKCPKLFRHESHLQNHVIVHDES 142
K + CP C F+ + + HV HD S
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 24.9 bits (53), Expect = 7.2
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNV 32
Y C C FK+ H+ H+ +V
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDGSV 37
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 27.4 bits (61), Expect = 0.71
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 59 RRSFRCKSCGRRFESEELLIVHQVIHER 86
RS+ C C R F S + L H +H R
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVHRR 31
Score = 26.6 bits (59), Expect = 1.5
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNR 30
Y C +C + F+ + + HM H R
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVHRR 31
Score = 24.7 bits (54), Expect = 6.7
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 170 SEMHNCDFCHLTFTTDNDLIRHMRSH 195
+ C FC F + L HM H
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVH 29
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.72
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ F C CG+ F + LI+HQ IH
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 25.1 bits (56), Expect = 5.0
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 107
C++C + F +K +L H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 24.8 bits (55), Expect = 7.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
F C +C K+F H+++L H +H
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.5 bits (62), Expect = 0.72
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + C CG+ F ++ L+ HQ H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.5 bits (62), Expect = 0.73
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERK 87
+ +S+ C CG+ F L HQ IH RK
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRK 38
Score = 25.6 bits (57), Expect = 3.4
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 107
+ K + C +C ++F HL +H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 25.2 bits (56), Expect = 5.8
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K ++C +C K F HL H +H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.73
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 26.3 bits (59), Expect = 1.9
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +KC +C + F HL H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 30.1 bits (67), Expect = 0.74
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 11/132 (8%)
Query: 53 LLTHNVRRSFRCKSCGRRFESEELLIVHQVIHE--RKFHKCTQCEESFKNKKHLKQHLLA 110
++ +C +L + E KC K + + A
Sbjct: 45 IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQA 104
Query: 111 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETS 170
H + + CP+C + F+ + H+ H++ C C + +H+ +
Sbjct: 105 HCEFALMDCPQCQRPFQ-KFHINIHILKDCPRRQVSCDNCAASMAFED-----KEIHDQN 158
Query: 171 ---EMHNCDFCH 179
+ + H
Sbjct: 159 CPLALEHHHHHH 170
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.78
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQ 93
+ + + ++C CG+ F L H+ IH + +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 27.1 bits (61), Expect = 1.3
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 121
K +KC++C ++F HL +H H +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 25.5 bits (57), Expect = 4.1
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C +C K F +HL H +H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.80
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + F+C+ CG+RF L HQ +H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 26.7 bits (60), Expect = 1.4
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
K +C +C + F HL H H K
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 2.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K F C +C K F SHL +H VH
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.80
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 79 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K KC C +SF + L +H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 25.9 bits (58), Expect = 2.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K F C C K F S L H +VH
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 25.1 bits (56), Expect = 5.3
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + F+C CG+ F L H ++H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 27.4 bits (60), Expect = 0.82
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 117 FHCPKCPKLFRHESHLQNHV 136
F CP CPK F L H+
Sbjct: 3 FACPACPKRFMRSDALSKHI 22
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.83
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + R F+C CG+ F L H +H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 25.6 bits (57), Expect = 4.4
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 80 HQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
ER F KC +C + F + HL HL H + K
Sbjct: 3 SGSSGSGERPF-KCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 24.4 bits (54), Expect = 9.8
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 107 HLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ + F C +C K F SHL H+ +H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.85
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
K +KC C ++F+ HL QH H +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C+ CG+ F L+ H +H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 25.6 bits (57), Expect = 3.6
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C C K FR SHL H VH
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.87
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + +RC CG+ F + L HQ IH
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 26.3 bits (59), Expect = 2.5
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K ++C +C ++F K +L QH
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.89
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + ++C CG+ F L H IH
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 25.9 bits (58), Expect = 3.3
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
K +KC +C + F HL H H K
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.90
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ +V + ++C+ CG+ + L +HQ +H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 25.5 bits (57), Expect = 3.9
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 107
K +KC C + + + +L H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 24.4 bits (54), Expect = 9.9
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C C K + +L H VH
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein,
isopeptide bond, protein binding; 2.05A {Mus musculus}
Length = 391
Score = 30.2 bits (67), Expect = 0.95
Identities = 17/158 (10%), Positives = 43/158 (27%), Gaps = 10/158 (6%)
Query: 176 DFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKA-----HIKIIHNLFTC 230
F + + + + + + L L I + L
Sbjct: 99 KFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDS 158
Query: 231 IHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQS 290
+ L+I ES + N + + + E + + Q+
Sbjct: 159 AMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQA 218
Query: 291 SGFMYNDETSSYSH-----IKQEDDSCDTYMDDTTENS 323
++ + +Y +K+E+ Y++ E +
Sbjct: 219 PSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECN 256
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.98
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +CT+C ++F K L H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 27.1 bits (61), Expect = 1.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + F C CG+ F + L +HQ IH
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 27.1 bits (61), Expect = 0.99
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 121
K +KC +C + F L QH H K
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 5.0
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C +C K+F S L H +H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.1 bits (61), Expect = 1.0
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C C + F ++ L+VHQ H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 26.3 bits (59), Expect = 2.1
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 79 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K ++C +C+++F K +L H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.0
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C CG+ F + L VHQ IH
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 26.0 bits (58), Expect = 3.1
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 79 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K ++C+ C +SF K L H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.0
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C CG+ F LI HQ IH
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 24.8 bits (55), Expect = 7.3
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K + C +C ++F + +L +H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.2
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 79 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +KC C + F HL+ H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 25.6 bits (57), Expect = 4.5
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F L HQ +H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 25.2 bits (56), Expect = 5.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K + C C K F SHLQ H VH
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.2
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F + L +HQ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 25.9 bits (58), Expect = 3.2
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +KC+ C ++F K L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 1.3
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +KC +C + +K + L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 26.7 bits (60), Expect = 1.7
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + ++C CG+ ++ L HQ +H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.8 bits (60), Expect = 1.3
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F HQ +H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 25.6 bits (57), Expect = 4.3
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 121
K +KC +C ++F + QH H +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.4
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 107
+K KC +C+++F L H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ ++ F+C C + F L VHQ IH
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.4
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + + C CG+ F + +L HQ H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 26.3 bits (59), Expect = 2.4
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 79 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K + C +C ++F K L H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.4
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 79 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
+K +KC +C + F HL +H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 25.2 bits (56), Expect = 5.4
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ ++ ++C CG+ F L H+ IH
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 1.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 86 RKFHKCTQCEESFKNKKHLKQHLLAHEK 113
K KC +CE++F K+L QH H +
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 25.2 bits (54), Expect = 5.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVHQVIHER 86
+ + F+C C + F + L H+ IH R
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.4
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + +RC CG+ F L HQ IH
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 25.9 bits (58), Expect = 3.0
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K ++C +C ++F ++ +L H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 26.7 bits (60), Expect = 1.5
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + F+C CG+ F L VH +H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 25.9 bits (58), Expect = 2.9
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K KC +C + F + L H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.6
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +KC +C + + +K +L H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 26.3 bits (59), Expect = 2.1
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C+ CG+ + S+ L +HQ +H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.6
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 107
K +KC C +SF+ L H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 25.9 bits (58), Expect = 3.1
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C C + F L VHQ IH
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 25.6 bits (57), Expect = 4.5
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C C K FR+ S L H +H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ R + C CG+ F + L +HQ IH
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 25.9 bits (58), Expect = 3.4
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK 121
+ ++C++C ++F K L H H K
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
K + C C ++F HL QHL H + +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C C K F +HL H+ VH
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 25.6 bits (57), Expect = 3.7
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C CG+ F L H +H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 1.9
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K F C C K F L H +H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 26.3 bits (59), Expect = 1.9
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + F C CG+ F L H+ IH
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 25.2 bits (56), Expect = 5.3
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K C C ++F + L QH
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 26.1 bits (58), Expect = 2.0
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 107 HLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+K F CP C + F HL H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 2.0
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +KC+ C +SF K L+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F + L +HQ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.3 bits (57), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 90 KCTQCEESF-KNKKHLKQHLLAHEKVK 115
KC C+ F KN L++H+ AHE VK
Sbjct: 11 KCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 2.1
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 107
K + C +C +SF K HL +H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 25.6 bits (57), Expect = 4.3
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C CG+ F + L H+ IH
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.7 bits (57), Expect = 2.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAHEKVK 115
+ C C +F ++HLK+H +H K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.4 bits (56), Expect = 3.5
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSH 195
C+ C F L RH RSH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
Score = 24.2 bits (53), Expect = 8.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
+ F C C + F + HL+ H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 24.2 bits (53), Expect = 9.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIH 84
RSF C+ C R F +E L H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.4 bits (59), Expect = 2.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNR 30
++C C F S S KH+ H R
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHER 37
Score = 26.0 bits (58), Expect = 3.2
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER 86
+ + F+CK CG F L H HER
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 2.3
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C C K F H + L H VH
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 25.9 bits (58), Expect = 3.2
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C C + F L HQ +H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 25.5 bits (57), Expect = 3.6
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 79 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K ++C C ++F + L QH
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 2.4
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++ + CK C + F L H+ +H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 28.7 bits (65), Expect = 2.5
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 94
C C ++ E + + ++ + +C +C
Sbjct: 122 DKLDCLDCHETYDWSEFV---EDFNKGEIPRCRKC 153
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (57), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIH 84
+S +C+ CG F LI HQV+H
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 2.6
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + + C CG+ F + L VHQ IH
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 24.8 bits (55), Expect = 7.4
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 79 VHQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K ++C+ C ++F +++ L H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 24.8 bits (55), Expect = 8.7
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ K + C C K F H L H +H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 2.7
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F L H+ IH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 25.5 bits (57), Expect = 3.8
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +KC +C + F HL +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQ 93
+ ++++C+ C F L +HQ +H K +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 7.9
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQH 107
K KC +C+ F L+ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F L HQ +H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 25.2 bits (56), Expect = 6.1
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
K ++C +C ++F L +H H K
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 3.0
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C+ CG+ F L H ++H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 25.2 bits (56), Expect = 6.4
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
K +KC +C + F ++ L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 28.3 bits (64), Expect = 3.2
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 94
+ C C +++ E+ V + + C C
Sbjct: 120 EEYYCVRCEKKYTVED---VIKKLESSDVPLCDDC 151
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P
2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Length = 48
Score = 25.8 bits (56), Expect = 3.8
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 62 FRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 94
+RC C + F E+L ++ V +C C
Sbjct: 4 YRCGKCWKTFTDEQLKVLPGV-------RCPYC 29
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 26.5 bits (58), Expect = 3.9
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 194 SHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNL-FTCIHCGDTLNNAKDYASH 246
H+E C +CGE +L + H F C C TL Y H
Sbjct: 8 QHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATL-WPGGYEQH 60
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 28.4 bits (64), Expect = 4.1
Identities = 3/35 (8%), Positives = 11/35 (31%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 94
C +C + + ++++ + C
Sbjct: 153 FEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECPC 187
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 25.2 bits (55), Expect = 4.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 117 FHCPKCPKLFRHESHLQNHVIVH 139
F CP+CPK F HL H+++H
Sbjct: 3 FACPECPKRFMRSDHLTLHILLH 25
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 4.4
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
K +KC +C + F HL +H H K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 25.2 bits (56), Expect = 5.6
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ + ++C CG+ F L H+ +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 26.4 bits (58), Expect = 4.5
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 91 CTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHV 136
C C ES K K +++H+ + C C K F + + ++HV
Sbjct: 13 CNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWGDDY-KSHV 56
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 27.7 bits (62), Expect = 5.2
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFK 99
S C C R F E++ + + +C C K
Sbjct: 138 ASATCTVCQRPFPGEDIR---ADVMADRVPRCPVCTGVVK 174
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.9 bits (54), Expect = 5.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 117 FHCPKCPKLFRHESHLQNHVIVH 139
F CP+CPK F HL H+ +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 6.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 201 KHTCDICGEKFINDLKLKAH 220
H CD+CG+KF + LK+H
Sbjct: 9 THLCDMCGKKFKSKGTLKSH 28
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 27.5 bits (62), Expect = 7.0
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQC 94
R RC SC FE E + + KC +C
Sbjct: 120 RVVRCTSCNNSFEVESAPKIPPL------PKCDKC 148
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 26.5 bits (57), Expect = 7.5
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 6/81 (7%)
Query: 34 HKCHLCTKAYPSEKNLDRHLLTH----NVRRSFRCKSCGRRFESEELLIVHQ--VIHERK 87
+C +C+ SE H + VRR +++ E +
Sbjct: 33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDR 92
Query: 88 FHKCTQCEESFKNKKHLKQHL 108
C C +F + + H
Sbjct: 93 SKCCPVCNMTFSSPVVAESHY 113
Score = 26.5 bits (57), Expect = 9.5
Identities = 10/81 (12%), Positives = 19/81 (23%), Gaps = 6/81 (7%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSH------EEYHTKHTCDICGEKFINDLKLKAHIKIIHN 226
C C +++ + H +S Y + +
Sbjct: 33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDR 92
Query: 227 LFTCIHCGDTLNNAKDYASHL 247
C C T ++ SH
Sbjct: 93 SKCCPVCNMTFSSPVVAESHY 113
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 27.4 bits (61), Expect = 7.6
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFK 99
C CG+ + + + F KC C E K
Sbjct: 135 AHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVK 174
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 26.0 bits (57), Expect = 7.8
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 35 KCHLCTKA-YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVI-----HERKF 88
C C K YP E+ L + H FRC C + +H I + F
Sbjct: 17 TCVECQKTVYPMERLLANQQVFH--ISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74
Query: 89 HKCTQCEESFKNKKH 103
+E F +
Sbjct: 75 KSKGNYDEGFGSGPS 89
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 24.8 bits (55), Expect = 8.1
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 80 HQVIHE-RKFHKCTQCEESFKNKKHLKQH 107
+K ++C +C ++F L +H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 25.6 bits (55), Expect = 8.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 62 FRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFK 99
++CK C + +S L H IH +F K + +E K
Sbjct: 26 YQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRK 63
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 27.1 bits (60), Expect = 9.2
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 7/66 (10%)
Query: 63 RCKSCGRRFESEELLIVHQVIHERKFHKCTQCEES----FKNKKHLKQHLLAHEKVKVFH 118
C +C E + I + C C + F + K + A +
Sbjct: 163 TCVTCHWNLPGERIF---NKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSMSER 219
Query: 119 CPKCPK 124
P
Sbjct: 220 PPYILN 225
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 26.2 bits (57), Expect = 9.4
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 198 YHTKHTCDICGEKFI-NDLKLKAHIKIIH-NLFTCIHCGDTLNNAKDYASH 246
+ C C ++ ++ ++ K+ H F C C + Y
Sbjct: 5 FGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLI 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.414
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,298,734
Number of extensions: 297955
Number of successful extensions: 2890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2362
Number of HSP's successfully gapped: 818
Length of query: 367
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 272
Effective length of database: 4,049,298
Effective search space: 1101409056
Effective search space used: 1101409056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.8 bits)