RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2876
(367 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 37.7 bits (87), Expect = 9e-05
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
K + C QC +SF +K +H+ H ++ + C C K F+ + HL H+ +H
Sbjct: 2 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 37.0 bits (85), Expect = 2e-04
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 150 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 195
C K F HK+ D+H+ +H + C C F + L+ HM+ H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 36.2 bits (83), Expect = 3e-04
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 167
K++ C +C K F H+S H+ +H + C C K F K HL H+ +H
Sbjct: 2 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 35.0 bits (80), Expect = 8e-04
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTH 56
Y C C K F + D+HM H + C +C K + + +L H+ H
Sbjct: 4 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 32.0 bits (72), Expect = 0.011
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 60 RSFRCKSCGRRFESEELLIVHQ-VIHERKFHKCTQCEESFKNKKHLKQHLLAH 111
+ + C+ CG+ F + H + + + C C + FK K HL H+ H
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 31.2 bits (70), Expect = 0.016
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 34 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ C C K++ + DRH+ H R + C CG++F+ + L+ H IH
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 27.7 bits (61), Expect = 0.33
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 178 CHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKI 223
C +FT + RHM + C +CG+KF L H+KI
Sbjct: 8 CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 27.8 bits (62), Expect = 0.18
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 51 RHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
R RR ++C CG+ F L H+ H
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 27.0 bits (60), Expect = 0.37
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 80 HQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAH 111
+ ER+ +KC +C +SF + L +H H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 27.0 bits (60), Expect = 0.40
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 106 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+ + + + C +C K F H S L H H
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 25.1 bits (55), Expect = 2.1
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 162 KHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 195
+ + CD C +F+ +DL +H R+H
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 27.2 bits (61), Expect = 0.30
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
+ F C C + F + HL+ H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 26.4 bits (59), Expect = 0.47
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAH 111
+ C C +F ++HLK+H +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 26.4 bits (59), Expect = 0.55
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIH 84
RSF C+ C R F +E L H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 25.3 bits (56), Expect = 1.2
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSH 195
C+ C F L RH RSH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
Score = 24.1 bits (53), Expect = 3.0
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILH 167
C C + F + HL +H H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
Score = 24.1 bits (53), Expect = 3.7
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHH 28
+ C C + F + +H H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 29.4 bits (66), Expect = 0.30
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 175 CDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCG 234
C FC F + + H + +H +I + L+ +IK+I+ +
Sbjct: 18 CLFCDRLFASAEETFSHCKL------EHQFNIDSMVHKHGLEFYGYIKLINFIRLKNPTV 71
Query: 235 DTLNNAKD 242
+ +N+ +
Sbjct: 72 EYMNSIYN 79
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 26.8 bits (60), Expect = 0.36
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 111 HEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
H K + C +C K F S L H VH
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 26.4 bits (59), Expect = 0.48
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAH 111
K + C +C ++F L QH H
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRVH 30
Score = 25.7 bits (57), Expect = 1.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 56 HNVRRSFRCKSCGRRFESEELLIVHQVIH 84
H+ + + C CG+ F +L+ HQ +H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 24.9 bits (55), Expect = 2.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSH 195
+ C C F+ + L++H R H
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVH 30
Score = 24.5 bits (54), Expect = 2.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILH 167
+ C+ C K F + L +H +H
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVH 30
Score = 24.1 bits (53), Expect = 3.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHH 28
Y C+ C K F +S+ +H H
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVH 30
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.9 bits (60), Expect = 0.37
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 111 HEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
H K + C C K FR + L H +
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 25.8 bits (57), Expect = 1.1
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAH 111
K + C+ C+++F+ K+ L H +
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 24.6 bits (54), Expect = 2.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHN 29
Y C +C K F++ D H + ++
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYH 32
Score = 24.6 bits (54), Expect = 2.7
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 55 THNVRRSFRCKSCGRRFESEELLIVHQVIH 84
TH + + C C + F ++LL +H +
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 24.6 bits (54), Expect = 2.8
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILH 167
+ C +C K F K LD H +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRY 31
Score = 24.2 bits (53), Expect = 3.8
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSH 195
+ C C TF L H + +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRY 31
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 26.9 bits (60), Expect = 0.40
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 87 KFHKCTQCEESFKNKKHLKQHL-LAHEKVKVFHC 119
K + C C + F HL H+ H + C
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 25.0 bits (55), Expect = 2.3
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 115 KVFHCPKCPKLFRHESHLQNH 135
K + C C K F HL H
Sbjct: 4 KPYICQSCGKGFSRPDHLNGH 24
Score = 24.6 bits (54), Expect = 2.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 202 HTCDICGEKFINDLKLKAHIKIIH 225
+ C CG+ F L HIK +H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
Score = 24.6 bits (54), Expect = 2.7
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSHEEYHTK---HTCDI 206
+ C C F+ + L H++ HT H C +
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQV---HTSERPHKCQV 39
Score = 24.6 bits (54), Expect = 3.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 6 YKCLYCHKVFKKSTSFDKHM-EHHNRNVLHKCHL 38
Y C C K F + + H+ + H HKC +
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 24.2 bits (53), Expect = 3.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILHETSE 171
+ C C K F HL+ H+ TSE
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSE 32
Score = 23.8 bits (52), Expect = 5.9
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 58 VRRSFRCKSCGRRFESEELLIVH-QVIHER-KFHKC 91
V + + C+SCG+ F + L H + +H + HKC
Sbjct: 2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 23.0 bits (50), Expect = 10.0
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 34 HKCHLCTKAYPSEKNLDRHL-LTHNVRRSFRCK 65
+ C C K + +L+ H+ H R +C+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 27.0 bits (60), Expect = 0.41
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIHERK 87
RS+ C C R F S + L H +H R
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRD 31
Score = 26.6 bits (59), Expect = 0.47
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 170 SEMHNCDFCHLTFTTDNDLIRHMRSH 195
+ C FC F + L HM H
Sbjct: 3 PRSYTCSFCKREFRSAQALGGHMNVH 28
Score = 25.8 bits (57), Expect = 0.99
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHHNR 30
Y C +C + F+ + + HM H R
Sbjct: 6 YTCSFCKREFRSAQALGGHMNVHRR 30
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.9 bits (60), Expect = 0.46
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAH 111
K ++C C F +K H+L
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQK 31
Score = 26.5 bits (59), Expect = 0.61
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILHETSEM 172
++C C F + H++ T +
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTENV 36
Score = 25.7 bits (57), Expect = 1.2
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 111 HEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
H K + C C F ++ H++
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 24.9 bits (55), Expect = 2.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 6 YKCLYCHKVFKKSTSFDKHME-HHNRNV 32
Y+C CH F +S + H+ H NV
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTENV 36
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 26.0 bits (58), Expect = 0.57
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K F C C + F HL H+ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 26.0 bits (58), Expect = 0.65
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAH 111
K +C C +F HL H+ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 26.0 bits (58), Expect = 0.70
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIH 84
+ F+C+ C R F + L H H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 24.5 bits (54), Expect = 2.7
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHH 28
++C C + F +S H+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH 26
Score = 24.1 bits (53), Expect = 3.7
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILH 167
+C C + F HL H+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH 26
Score = 24.1 bits (53), Expect = 3.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSH 195
C C F+ + L H+R+H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH 26
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.8 bits (57), Expect = 0.76
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K F CP+CPK F HL H+ H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
Score = 25.0 bits (55), Expect = 1.5
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAH 111
K C +C + F HL +H+ H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
Score = 24.6 bits (54), Expect = 1.9
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 62 FRCKSCGRRFESEELLIVHQVIH 84
F C C +RF + L H H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTH 25
Score = 24.2 bits (53), Expect = 2.9
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 175 CDFCHLTFTTDNDLIRHMRSH 195
C C F + L +H+++H
Sbjct: 5 CPECPKRFMRSDHLSKHIKTH 25
Score = 23.1 bits (50), Expect = 6.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 145 HKCLYCFKVFVHKAHLDKHLILH 167
C C K F+ HL KH+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTH 25
Score = 23.1 bits (50), Expect = 7.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 6 YKCLYCHKVFKKSTSFDKHMEHH 28
+ C C K F +S KH++ H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTH 25
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 25.8 bits (57), Expect = 1.0
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 107 HLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 139
+K F CP C + F HL H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 24.7 bits (54), Expect = 2.8
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 80 HQVIHER-KFHKCTQCEESFKNKKHLKQHLLAHEKV 114
K +C C+ SF HL H H V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 24.3 bits (53), Expect = 3.8
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 52 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ F+C C R F + L +H+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 23.2 bits (50), Expect = 8.5
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSH 195
C C +F+ + L H + H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRH 34
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 25.4 bits (55), Expect = 1.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 86 RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVF 117
RK C C + F++ HL +H L+H K +
Sbjct: 3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 25.7 bits (56), Expect = 1.5
Identities = 7/42 (16%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 155 VHKAHLDKHLI-LHETSEMHNCDFCHLTFTTDNDLIRHMRSH 195
+ + +DK++ + + + C TF ++ H+++H
Sbjct: 2 LPRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 23.7 bits (51), Expect = 7.9
Identities = 4/37 (10%), Positives = 16/37 (43%)
Query: 187 DLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKI 223
+ ++++ + + C + F +++HI+
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT 42
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 24.9 bits (55), Expect = 1.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 60 RSFRCKSCGRRFESEELLIVHQVIH 84
+ ++C CG+ F LI HQ IH
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
Score = 24.5 bits (54), Expect = 2.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVH 139
K + C +C K F S L NH +H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
Score = 24.1 bits (53), Expect = 2.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAH 111
K +KC +C ++F L H H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.1 bits (55), Expect = 1.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 118 HCPKCPKLFRHESHLQNHVIVHDESEVHKCLY 149
P C K F + HL+ H+ +H ++ + C +
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 23.5 bits (51), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 61 SFRCK--SCGRRFESEELLIVHQVIH-ERKFHKC 91
SF C +CG+ F ++ L H +H + + + C
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 23.5 bits (51), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 90 KCTQCEESFKNKKHLKQHLLAHEKVKVFHC 119
C +SF KKHLK+H+ H + + C
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.4 bits (56), Expect = 2.5
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 6 YKCLYCHKVFKKSTSFDKHME--HHNRNV 32
++CL C + F ST+ H H + +
Sbjct: 16 HRCLACARYFIDSTNLKTHFRSKDHKKRL 44
Score = 24.7 bits (54), Expect = 5.9
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 117 FHCPKCPKLFRHESHLQNHVIVHDESEVHK 146
C C + F ++L+ H S+ HK
Sbjct: 16 HRCLACARYFIDSTNLKTHF----RSKDHK 41
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 24.3 bits (53), Expect = 3.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSHEE 197
C C FTT + RH++ H +
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTD 32
Score = 23.9 bits (52), Expect = 4.9
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 87 KFHKCTQCEESFKNKKHLKQHLLAH 111
+ C C +F K + +HL H
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVH 30
Score = 23.9 bits (52), Expect = 5.0
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 56 HNVRRSFRCKSCGRRFESEELLIVHQVIH 84
+ +R F C+ C F ++ H +H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 23.2 bits (50), Expect = 7.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 115 KVFHCPKCPKLFRHESHLQNHVIVHDES 142
+ F C C F +++ H+ VH ++
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTDT 33
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 23.9 bits (51), Expect = 4.2
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 91 CTQCEESFKNKKHLKQHLLAH 111
C+ C+E+F+ + L+ H+++H
Sbjct: 7 CSVCQETFRRRMELRLHMVSH 27
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.8 bits (52), Expect = 4.4
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 173 HNCDF--CHLTFTTDNDLIRHMRSH 195
+ C F C+ F +L H+ +H
Sbjct: 3 YVCPFDGCNKKFAQSTNLKSHILTH 27
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 24.0 bits (52), Expect = 4.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 62 FRCKSCGRRFESEELLIVHQ 81
+ C C R F +LLI H
Sbjct: 2 YPCGLCNRAFTRRDLLIRHA 21
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 23.8 bits (52), Expect = 4.8
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 60 RSFRCK--SCGRRFESEELLIVHQVIHERK 87
R + C C + F LI H+ H+ K
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
1542]}
Length = 540
Score = 26.8 bits (59), Expect = 5.0
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 196 EEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLI--IHNI 253
E ++ E + KL + + L N +D L I N
Sbjct: 30 ENFNRDIEGTSVKEIYSKLSKLNELVDNYQTKYPSSGRNLALENFRDSLYSELRELIKNS 89
Query: 254 ESSQQVEKNL 263
+S KNL
Sbjct: 90 RTSTIASKNL 99
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 23.5 bits (50), Expect = 5.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 173 HNCDFCHLTFTTDNDLIRHMRSH 195
H C+ C F+ + L HMR H
Sbjct: 2 HKCEVCGKCFSRKDKLKTHMRCH 24
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 23.0 bits (50), Expect = 7.8
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 115 KVFHC--PKCPKLFRHESHLQNHVIVH 139
+ + C C + F + L H+ +H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 25.9 bits (57), Expect = 8.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 2 EKTLYKCLYCHKVFKKSTSFDKHMEH 27
+ L+ C YC K K S+ H+
Sbjct: 28 QPKLWLCEYCLKYMKYEKSYRFHLGQ 53
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.0 bits (50), Expect = 8.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 172 MHNCDFCHLTFTTDNDLIRHMRSH 195
M +C FT ++L RH R+H
Sbjct: 4 MCTWSYCGKRFTRSDELQRHKRTH 27
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 25.9 bits (57), Expect = 8.7
Identities = 3/26 (11%), Positives = 11/26 (42%)
Query: 2 EKTLYKCLYCHKVFKKSTSFDKHMEH 27
E +Y + + F ++++ +
Sbjct: 31 EDFIYIDDFTLQYFGSKKQYERYRKK 56
>d2gmya1 a.152.1.3 (A:2-148) Hypothetical protein Atu0492
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 147
Score = 25.5 bits (55), Expect = 8.8
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 143 EVHKCLYCFKVFVHKAHLD---KHLILHETSEMHNCDFCHLTFTTD-NDLIRHMRSHEEY 198
E K + + +V + L+ HLI S ++ C FC + +
Sbjct: 12 EAFKAVMALENYVQSSGLEHRFIHLIKLRASIINGCAFCVDMHVKESRHDGLSEQWINLM 71
Query: 199 HTKHTCDICGEK 210
+ E+
Sbjct: 72 SVWRESPVYTEQ 83
>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 23.2 bits (49), Expect = 9.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 8 CLYCHKVFKKSTSFDKH-MEHHNRNVL 33
CL C + FK S S +H +E HN+N +
Sbjct: 6 CLECMRTFKSSFSIWRHQVEVHNQNNM 32
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.0 bits (49), Expect = 9.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 89 HKCTQCEESFKNKKHLKQHLLAH 111
H C +C ++F LK+H L H
Sbjct: 3 HVCAECGKAFVESSKLKRHQLVH 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.414
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,361,363
Number of extensions: 64903
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 276
Length of query: 367
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,213,086
Effective search space: 339664080
Effective search space used: 339664080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)