Query psy2878
Match_columns 181
No_of_seqs 134 out of 1439
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 19:10:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0450 AhpC Peroxiredoxin [Po 100.0 8.5E-41 1.9E-45 244.7 17.7 172 1-181 2-181 (194)
2 PRK10382 alkyl hydroperoxide r 100.0 1.5E-40 3.3E-45 248.3 19.1 171 1-181 1-177 (187)
3 PRK13190 putative peroxiredoxi 100.0 9.2E-40 2E-44 247.5 18.5 167 1-181 1-174 (202)
4 PRK15000 peroxidase; Provision 100.0 6.5E-39 1.4E-43 242.3 18.5 173 1-181 1-182 (200)
5 PTZ00137 2-Cys peroxiredoxin; 100.0 1.5E-38 3.1E-43 247.4 18.9 171 1-181 67-245 (261)
6 PRK13191 putative peroxiredoxi 100.0 2.9E-38 6.3E-43 241.0 18.6 167 1-181 6-185 (215)
7 PRK13599 putative peroxiredoxi 100.0 5.6E-38 1.2E-42 239.4 18.6 168 1-181 1-180 (215)
8 TIGR03137 AhpC peroxiredoxin. 100.0 1E-37 2.2E-42 233.9 18.7 168 1-181 1-177 (187)
9 PRK13189 peroxiredoxin; Provis 100.0 1.6E-37 3.4E-42 238.2 18.5 167 1-181 8-187 (222)
10 PTZ00253 tryparedoxin peroxida 100.0 2E-37 4.3E-42 234.4 17.8 171 2-181 6-184 (199)
11 cd03016 PRX_1cys Peroxiredoxin 100.0 2.6E-37 5.7E-42 234.4 18.4 164 4-181 1-174 (203)
12 COG1225 Bcp Peroxiredoxin [Pos 100.0 1.5E-36 3.2E-41 218.0 17.2 147 1-165 3-156 (157)
13 cd03015 PRX_Typ2cys Peroxiredo 100.0 1.4E-35 3E-40 219.8 19.4 165 4-177 1-173 (173)
14 KOG0852|consensus 100.0 1.1E-32 2.3E-37 197.4 15.9 171 1-181 3-181 (196)
15 PRK00522 tpx lipid hydroperoxi 100.0 2.1E-30 4.6E-35 191.0 17.3 144 1-163 17-167 (167)
16 cd03018 PRX_AhpE_like Peroxire 100.0 1.8E-30 3.9E-35 187.5 15.8 144 2-162 1-148 (149)
17 cd03014 PRX_Atyp2cys Peroxired 100.0 5.9E-30 1.3E-34 183.8 15.7 138 3-159 1-142 (143)
18 PRK09437 bcp thioredoxin-depen 100.0 1.2E-29 2.5E-34 184.6 16.1 144 2-163 4-154 (154)
19 PF00578 AhpC-TSA: AhpC/TSA fa 100.0 1.3E-29 2.7E-34 177.4 13.7 123 4-143 1-124 (124)
20 KOG0854|consensus 100.0 2.1E-29 4.6E-34 180.7 14.1 166 2-181 6-188 (224)
21 cd03017 PRX_BCP Peroxiredoxin 100.0 9.9E-29 2.2E-33 176.5 14.1 135 6-158 1-139 (140)
22 cd03013 PRX5_like Peroxiredoxi 100.0 1.6E-28 3.6E-33 178.8 14.8 129 4-150 1-143 (155)
23 PF08534 Redoxin: Redoxin; In 100.0 1.4E-28 3.1E-33 177.1 13.9 132 3-149 1-136 (146)
24 cd02969 PRX_like1 Peroxiredoxi 100.0 1.8E-27 3.9E-32 175.9 15.5 147 5-174 1-171 (171)
25 cd02971 PRX_family Peroxiredox 100.0 6.5E-27 1.4E-31 167.0 15.5 127 7-149 1-131 (140)
26 cd02970 PRX_like2 Peroxiredoxi 99.9 4.1E-26 9E-31 164.3 12.3 122 7-145 1-147 (149)
27 PTZ00056 glutathione peroxidas 99.9 2.8E-25 6.1E-30 167.9 13.2 141 3-165 14-178 (199)
28 PTZ00256 glutathione peroxidas 99.9 3.4E-25 7.4E-30 165.5 12.4 140 4-164 16-180 (183)
29 PLN02399 phospholipid hydroper 99.9 7.9E-25 1.7E-29 168.5 14.3 141 3-165 74-234 (236)
30 PLN02412 probable glutathione 99.9 5.1E-25 1.1E-29 162.3 12.1 138 5-164 6-163 (167)
31 cd00340 GSH_Peroxidase Glutath 99.9 3.7E-25 8E-30 160.7 10.9 120 8-146 2-141 (152)
32 TIGR02661 MauD methylamine deh 99.9 1.3E-24 2.9E-29 163.1 13.6 134 2-164 46-181 (189)
33 cd03012 TlpA_like_DipZ_like Tl 99.9 7E-25 1.5E-29 154.4 11.0 105 32-146 14-124 (126)
34 TIGR02540 gpx7 putative glutat 99.9 1.4E-24 2.9E-29 157.8 11.7 128 24-164 9-152 (153)
35 PRK03147 thiol-disulfide oxido 99.9 4.3E-24 9.4E-29 157.7 14.2 136 2-164 35-171 (173)
36 PRK15412 thiol:disulfide inter 99.9 2.5E-24 5.5E-29 161.1 11.6 118 3-147 40-162 (185)
37 TIGR00385 dsbE periplasmic pro 99.9 1.6E-23 3.5E-28 155.2 11.0 130 3-163 35-169 (173)
38 cd02968 SCO SCO (an acronym fo 99.9 4.9E-23 1.1E-27 147.3 12.7 120 7-144 1-140 (142)
39 KOG0855|consensus 99.9 7.5E-23 1.6E-27 145.9 12.4 145 2-163 63-210 (211)
40 cd02967 mauD Methylamine utili 99.9 1.8E-22 3.9E-27 139.3 13.1 110 9-144 1-112 (114)
41 cd03010 TlpA_like_DsbE TlpA-li 99.9 1.9E-22 4.1E-27 141.9 11.7 117 6-146 1-119 (127)
42 TIGR01626 ytfJ_HI0045 conserve 99.9 9.4E-22 2E-26 145.8 12.0 144 2-164 23-182 (184)
43 cd03008 TryX_like_RdCVF Trypar 99.9 5.6E-22 1.2E-26 142.3 10.2 103 32-144 16-129 (146)
44 cd02966 TlpA_like_family TlpA- 99.9 4.1E-21 8.9E-26 131.1 12.0 111 20-144 2-114 (116)
45 PRK14018 trifunctional thiored 99.9 8.8E-21 1.9E-25 159.9 15.1 120 3-147 33-159 (521)
46 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 2.3E-20 4.9E-25 130.4 12.8 108 9-145 1-110 (123)
47 PRK10606 btuE putative glutath 99.8 4.5E-20 9.7E-25 137.4 13.3 138 6-164 3-180 (183)
48 PLN02919 haloacid dehalogenase 99.8 6.8E-20 1.5E-24 166.8 14.3 123 3-146 392-521 (1057)
49 cd02964 TryX_like_family Trypa 99.8 1E-19 2.2E-24 129.1 10.8 102 32-144 8-116 (132)
50 cd03009 TryX_like_TryX_NRX Try 99.8 4E-20 8.7E-25 130.8 8.5 110 23-144 4-116 (131)
51 PRK13728 conjugal transfer pro 99.8 5E-18 1.1E-22 125.3 11.6 108 26-165 62-171 (181)
52 COG2077 Tpx Peroxiredoxin [Pos 99.7 4.8E-17 1E-21 114.6 12.2 125 2-145 18-148 (158)
53 PF02630 SCO1-SenC: SCO1/SenC; 99.7 4.1E-17 8.8E-22 121.0 10.8 122 6-144 30-171 (174)
54 PF13905 Thioredoxin_8: Thiore 99.7 4E-17 8.6E-22 109.0 9.2 90 41-140 1-95 (95)
55 COG1999 Uncharacterized protei 99.7 3.9E-15 8.4E-20 113.1 13.8 139 20-166 50-205 (207)
56 COG0678 AHP1 Peroxiredoxin [Po 99.6 3.1E-14 6.8E-19 100.2 13.0 138 1-147 2-148 (165)
57 TIGR02738 TrbB type-F conjugat 99.6 5.5E-15 1.2E-19 107.1 8.3 102 32-163 45-151 (153)
58 COG0386 BtuE Glutathione perox 99.6 6.8E-14 1.5E-18 99.1 10.7 113 24-145 12-144 (162)
59 cd02950 TxlA TRX-like protein 99.5 1.8E-13 3.9E-18 98.2 9.3 103 32-168 9-113 (142)
60 KOG2792|consensus 99.4 4.5E-13 9.6E-18 102.3 7.7 137 15-163 117-273 (280)
61 KOG0541|consensus 99.4 2E-12 4.4E-17 91.7 10.2 140 1-150 8-157 (171)
62 TIGR02740 TraF-like TraF-like 99.4 1.4E-12 3E-17 103.0 9.5 108 32-166 157-265 (271)
63 cd02985 TRX_CDSP32 TRX family, 99.4 1.2E-11 2.7E-16 83.8 10.6 90 37-162 11-100 (103)
64 KOG1651|consensus 99.3 1.9E-11 4.1E-16 87.8 10.2 122 7-145 13-153 (171)
65 cd02963 TRX_DnaJ TRX domain, D 99.3 7.3E-11 1.6E-15 81.1 10.5 91 38-164 21-111 (111)
66 KOG2501|consensus 99.3 6.4E-11 1.4E-15 84.9 9.7 109 22-144 17-132 (157)
67 cd02999 PDI_a_ERp44_like PDIa 99.3 5.5E-11 1.2E-15 80.3 8.8 85 37-159 14-98 (100)
68 cd02951 SoxW SoxW family; SoxW 99.2 4E-11 8.6E-16 84.0 7.9 104 40-166 12-120 (125)
69 PF00837 T4_deiodinase: Iodoth 99.2 1.2E-10 2.5E-15 89.0 10.3 137 3-164 74-236 (237)
70 cd02948 TRX_NDPK TRX domain, T 99.2 3.4E-10 7.3E-15 76.6 9.5 87 40-164 16-102 (102)
71 cd02956 ybbN ybbN protein fami 99.1 7E-10 1.5E-14 73.9 9.5 85 40-161 11-95 (96)
72 cd02953 DsbDgamma DsbD gamma f 99.1 4.3E-10 9.3E-15 76.1 8.4 90 40-161 10-103 (104)
73 PF13098 Thioredoxin_2: Thiore 99.1 2E-10 4.3E-15 78.7 6.5 105 40-160 4-111 (112)
74 PRK09381 trxA thioredoxin; Pro 99.0 3.4E-09 7.3E-14 72.3 10.0 86 41-163 21-106 (109)
75 cd02954 DIM1 Dim1 family; Dim1 99.0 5E-09 1.1E-13 72.1 10.6 92 40-164 13-110 (114)
76 cd02993 PDI_a_APS_reductase PD 99.0 3.9E-09 8.5E-14 72.2 8.8 87 40-159 20-107 (109)
77 cd02994 PDI_a_TMX PDIa family, 99.0 6.8E-09 1.5E-13 69.7 9.6 85 40-162 16-100 (101)
78 PF00255 GSHPx: Glutathione pe 99.0 5.5E-09 1.2E-13 71.2 8.9 76 24-108 8-91 (108)
79 cd03002 PDI_a_MPD1_like PDI fa 98.9 9.1E-09 2E-13 69.9 8.6 88 40-161 17-108 (109)
80 PRK10996 thioredoxin 2; Provis 98.9 1.7E-08 3.7E-13 72.1 10.2 88 40-164 51-138 (139)
81 cd02949 TRX_NTR TRX domain, no 98.9 2.1E-08 4.5E-13 67.1 9.8 73 40-145 12-84 (97)
82 cd03000 PDI_a_TMX3 PDIa family 98.9 2E-08 4.3E-13 68.0 9.1 87 40-163 14-102 (104)
83 cd03004 PDI_a_ERdj5_C PDIa fam 98.9 2.8E-08 6E-13 67.1 9.3 74 40-145 18-91 (104)
84 cd03005 PDI_a_ERp46 PDIa famil 98.9 1.3E-08 2.7E-13 68.3 7.3 71 43-145 18-90 (102)
85 cd03003 PDI_a_ERdj5_N PDIa fam 98.9 1.1E-08 2.4E-13 68.8 7.0 72 40-144 17-88 (101)
86 TIGR01126 pdi_dom protein disu 98.8 3.5E-08 7.5E-13 65.9 8.9 88 40-163 12-100 (102)
87 cd02996 PDI_a_ERp44 PDIa famil 98.8 3.7E-08 8.1E-13 67.0 9.1 85 41-160 18-107 (108)
88 cd02997 PDI_a_PDIR PDIa family 98.8 4.3E-08 9.3E-13 65.9 8.8 76 40-145 16-92 (104)
89 TIGR01295 PedC_BrcD bacterioci 98.8 3.2E-08 6.8E-13 69.2 8.3 79 40-147 22-109 (122)
90 cd02962 TMX2 TMX2 family; comp 98.8 4.5E-08 9.8E-13 70.9 9.3 80 40-146 46-126 (152)
91 KOG0910|consensus 98.8 6E-08 1.3E-12 69.1 9.5 87 40-163 60-146 (150)
92 cd02984 TRX_PICOT TRX domain, 98.8 7.4E-08 1.6E-12 64.0 9.4 72 41-145 14-85 (97)
93 PF00085 Thioredoxin: Thioredo 98.8 9.5E-08 2.1E-12 63.8 10.0 86 41-163 17-102 (103)
94 cd03065 PDI_b_Calsequestrin_N 98.8 1.3E-07 2.9E-12 65.7 10.8 88 41-164 26-118 (120)
95 cd02959 ERp19 Endoplasmic reti 98.8 8.8E-09 1.9E-13 71.5 4.6 84 33-145 11-94 (117)
96 PHA02278 thioredoxin-like prot 98.8 1.1E-07 2.3E-12 64.5 9.7 78 40-146 13-90 (103)
97 KOG0907|consensus 98.8 1.3E-07 2.8E-12 64.4 9.6 85 40-163 20-104 (106)
98 PTZ00051 thioredoxin; Provisio 98.7 9.3E-08 2E-12 63.7 8.3 73 40-146 17-89 (98)
99 TIGR01068 thioredoxin thioredo 98.7 1.8E-07 3.8E-12 62.2 9.7 86 41-163 14-99 (101)
100 PF05988 DUF899: Bacterial pro 98.7 1.1E-06 2.4E-11 66.1 14.4 112 24-145 53-173 (211)
101 cd02998 PDI_a_ERp38 PDIa famil 98.7 8E-08 1.7E-12 64.5 7.4 74 41-144 18-92 (105)
102 cd02955 SSP411 TRX domain, SSP 98.7 4.9E-07 1.1E-11 63.3 11.1 106 34-164 8-121 (124)
103 cd02961 PDI_a_family Protein D 98.7 9.5E-08 2.1E-12 63.2 7.2 85 40-159 14-99 (101)
104 PLN00410 U5 snRNP protein, DIM 98.7 2.4E-07 5.3E-12 66.1 9.3 96 40-167 22-122 (142)
105 cd03006 PDI_a_EFP1_N PDIa fami 98.7 2E-07 4.4E-12 64.2 8.7 72 40-144 28-100 (113)
106 PF13911 AhpC-TSA_2: AhpC/TSA 98.7 2.4E-07 5.1E-12 63.9 8.9 78 64-145 2-112 (115)
107 cd02986 DLP Dim1 family, Dim1- 98.7 5.6E-07 1.2E-11 61.7 10.4 93 40-165 13-111 (114)
108 cd02992 PDI_a_QSOX PDIa family 98.6 3.5E-07 7.6E-12 63.1 8.8 69 41-138 19-89 (114)
109 PRK00293 dipZ thiol:disulfide 98.6 2.1E-07 4.5E-12 80.8 9.3 96 37-165 470-570 (571)
110 cd02952 TRP14_like Human TRX-r 98.6 1.2E-07 2.5E-12 65.9 6.2 78 40-141 20-104 (119)
111 cd02975 PfPDO_like_N Pyrococcu 98.6 6.3E-07 1.4E-11 61.7 9.4 84 42-161 23-109 (113)
112 PTZ00443 Thioredoxin domain-co 98.6 4.5E-07 9.7E-12 69.7 9.4 87 41-164 52-138 (224)
113 cd02957 Phd_like Phosducin (Ph 98.6 1.1E-06 2.3E-11 60.5 10.1 71 41-146 24-94 (113)
114 PF13728 TraF: F plasmid trans 98.6 4.3E-07 9.4E-12 69.5 8.9 100 35-160 114-213 (215)
115 cd03001 PDI_a_P5 PDIa family, 98.6 7.7E-07 1.7E-11 59.6 9.0 84 41-160 18-101 (103)
116 cd02989 Phd_like_TxnDC9 Phosdu 98.5 2.6E-06 5.7E-11 58.6 11.4 73 40-146 21-93 (113)
117 cd02965 HyaE HyaE family; HyaE 98.5 7.5E-07 1.6E-11 60.9 8.0 74 40-146 26-101 (111)
118 cd02947 TRX_family TRX family; 98.5 2.1E-06 4.6E-11 55.5 9.9 70 42-145 11-80 (93)
119 TIGR00424 APS_reduc 5'-adenyly 98.5 1.6E-06 3.5E-11 73.1 10.4 93 40-164 370-462 (463)
120 PLN02309 5'-adenylylsulfate re 98.5 1.9E-06 4.2E-11 72.6 10.5 93 40-165 364-457 (457)
121 COG3118 Thioredoxin domain-con 98.4 6.4E-07 1.4E-11 70.5 7.0 73 40-145 42-114 (304)
122 TIGR02739 TraF type-F conjugat 98.4 1.5E-06 3.1E-11 68.0 7.7 105 34-164 143-247 (256)
123 cd02958 UAS UAS family; UAS is 98.4 3.2E-06 6.8E-11 58.1 8.3 97 34-164 10-110 (114)
124 PF09695 YtfJ_HI0045: Bacteria 98.4 1.5E-05 3.2E-10 57.4 11.6 148 2-163 1-159 (160)
125 PRK13703 conjugal pilus assemb 98.3 3.5E-06 7.7E-11 65.5 8.5 104 36-165 138-241 (248)
126 cd02987 Phd_like_Phd Phosducin 98.3 9.1E-06 2E-10 60.3 10.3 86 42-162 84-172 (175)
127 TIGR00411 redox_disulf_1 small 98.3 1.3E-05 2.8E-10 51.3 9.6 78 45-163 3-80 (82)
128 cd02995 PDI_a_PDI_a'_C PDIa fa 98.3 5.5E-06 1.2E-10 55.4 8.0 43 41-84 18-61 (104)
129 PTZ00102 disulphide isomerase; 98.3 5.2E-06 1.1E-10 70.4 9.6 92 40-166 374-466 (477)
130 PF04592 SelP_N: Selenoprotein 98.3 1.3E-05 2.8E-10 61.2 10.3 128 32-170 17-151 (238)
131 PTZ00102 disulphide isomerase; 98.2 1.1E-05 2.4E-10 68.4 10.0 90 40-166 48-139 (477)
132 TIGR01130 ER_PDI_fam protein d 98.2 1.5E-05 3.3E-10 67.0 10.7 91 40-166 17-110 (462)
133 KOG4498|consensus 98.2 1.1E-05 2.4E-10 59.4 8.5 130 24-162 36-195 (197)
134 cd02960 AGR Anterior Gradient 98.2 2.2E-05 4.7E-10 55.3 9.2 96 36-163 18-121 (130)
135 TIGR02187 GlrX_arch Glutaredox 98.2 1.4E-05 2.9E-10 61.2 8.6 92 38-161 16-110 (215)
136 PF05176 ATP-synt_10: ATP10 pr 98.1 5.2E-05 1.1E-09 59.3 10.1 137 7-163 100-251 (252)
137 PTZ00062 glutaredoxin; Provisi 98.1 4.4E-05 9.5E-10 57.9 9.3 60 44-145 20-79 (204)
138 cd02988 Phd_like_VIAF Phosduci 97.9 0.00011 2.5E-09 55.2 9.8 85 41-162 102-189 (192)
139 cd01659 TRX_superfamily Thiore 97.9 6.6E-05 1.4E-09 44.3 7.0 43 46-91 2-44 (69)
140 TIGR00412 redox_disulf_2 small 97.9 0.00016 3.4E-09 46.1 8.8 35 46-84 3-37 (76)
141 COG4312 Uncharacterized protei 97.9 0.00018 3.9E-09 54.3 9.8 85 33-121 63-154 (247)
142 smart00594 UAS UAS domain. 97.9 0.00031 6.8E-09 48.9 10.1 91 37-161 23-121 (122)
143 cd02973 TRX_GRX_like Thioredox 97.8 0.0003 6.4E-09 43.3 7.8 37 45-84 3-39 (67)
144 cd03026 AhpF_NTD_C TRX-GRX-lik 97.7 0.00024 5.3E-09 46.7 7.7 70 38-143 9-78 (89)
145 PHA02125 thioredoxin-like prot 97.7 0.00049 1.1E-08 43.6 8.6 72 45-161 2-73 (75)
146 PF13899 Thioredoxin_7: Thiore 97.7 0.00025 5.4E-09 45.7 7.3 51 38-90 14-67 (82)
147 TIGR01130 ER_PDI_fam protein d 97.7 0.00023 5E-09 59.9 8.9 90 40-166 363-455 (462)
148 cd02982 PDI_b'_family Protein 97.7 0.00031 6.6E-09 46.9 7.6 43 41-85 12-54 (103)
149 COG0526 TrxA Thiol-disulfide i 97.6 0.00017 3.7E-09 47.9 5.6 48 35-84 26-73 (127)
150 PF14595 Thioredoxin_9: Thiore 97.5 0.00012 2.6E-09 51.6 3.9 78 37-144 37-114 (129)
151 TIGR02187 GlrX_arch Glutaredox 97.3 0.0039 8.5E-08 47.6 10.6 81 42-162 133-213 (215)
152 PF13778 DUF4174: Domain of un 97.1 0.002 4.3E-08 44.7 6.4 109 36-165 3-112 (118)
153 KOG0190|consensus 97.0 0.0032 6.8E-08 53.6 7.3 90 42-165 43-132 (493)
154 PF10417 1-cysPrx_C: C-termina 96.8 0.0004 8.7E-09 38.6 0.5 16 166-181 8-23 (40)
155 KOG0908|consensus 96.6 0.0023 5E-08 49.5 3.7 45 37-84 17-61 (288)
156 cd02991 UAS_ETEA UAS family, E 96.6 0.0094 2E-07 41.1 6.4 94 35-165 11-113 (116)
157 PRK11657 dsbG disulfide isomer 96.5 0.016 3.6E-07 45.4 7.7 29 40-69 116-144 (251)
158 PRK11509 hydrogenase-1 operon 96.3 0.071 1.5E-06 37.6 9.4 45 111-165 80-124 (132)
159 COG2143 Thioredoxin-related pr 96.0 0.071 1.5E-06 38.6 8.2 107 39-165 40-149 (182)
160 COG4232 Thiol:disulfide interc 95.9 0.016 3.5E-07 50.0 5.3 93 39-164 472-567 (569)
161 TIGR02196 GlrX_YruB Glutaredox 95.9 0.051 1.1E-06 33.2 6.4 32 47-85 3-34 (74)
162 PF03190 Thioredox_DsbH: Prote 95.6 0.053 1.1E-06 39.7 6.3 105 34-164 30-143 (163)
163 TIGR02200 GlrX_actino Glutared 95.6 0.047 1E-06 33.9 5.5 33 46-86 3-35 (77)
164 PF11009 DUF2847: Protein of u 95.6 0.091 2E-06 35.6 6.9 77 41-145 19-95 (105)
165 KOG0190|consensus 95.5 0.018 4E-07 49.1 4.1 44 40-85 383-426 (493)
166 PF06110 DUF953: Eukaryotic pr 95.5 0.028 6E-07 39.0 4.2 79 40-140 18-102 (119)
167 PF13192 Thioredoxin_3: Thiore 95.2 0.35 7.7E-06 30.4 8.6 69 51-161 7-75 (76)
168 KOG0191|consensus 95.0 0.26 5.7E-06 40.9 9.6 32 41-73 47-78 (383)
169 TIGR02180 GRX_euk Glutaredoxin 95.0 0.1 2.2E-06 33.0 5.7 36 46-85 2-37 (84)
170 PRK10877 protein disulfide iso 94.6 0.6 1.3E-05 36.2 10.0 36 40-80 106-141 (232)
171 cd03007 PDI_a_ERp29_N PDIa fam 94.4 0.27 5.9E-06 33.9 6.9 95 41-163 18-114 (116)
172 TIGR02190 GlrX-dom Glutaredoxi 94.2 0.15 3.3E-06 32.3 5.1 36 49-91 13-48 (79)
173 KOG3425|consensus 94.2 0.12 2.5E-06 35.7 4.6 48 37-85 20-75 (128)
174 cd02976 NrdH NrdH-redoxin (Nrd 94.0 0.29 6.3E-06 29.6 6.0 31 48-85 4-34 (73)
175 cd02066 GRX_family Glutaredoxi 93.8 0.32 7E-06 29.2 5.9 39 49-94 5-43 (72)
176 KOG0912|consensus 93.8 0.3 6.5E-06 39.3 6.8 90 42-164 14-105 (375)
177 cd03020 DsbA_DsbC_DsbG DsbA fa 93.6 0.27 5.8E-06 36.8 6.1 32 34-66 70-101 (197)
178 PF00462 Glutaredoxin: Glutare 93.1 0.34 7.3E-06 28.8 5.0 41 48-95 3-43 (60)
179 PRK11200 grxA glutaredoxin 1; 93.1 0.34 7.4E-06 31.0 5.3 37 47-85 4-40 (85)
180 KOG0191|consensus 93.0 0.56 1.2E-05 39.0 7.8 42 42-84 163-205 (383)
181 TIGR03143 AhpF_homolog putativ 93.0 1 2.2E-05 39.4 9.7 79 42-161 476-554 (555)
182 TIGR00365 monothiol glutaredox 92.9 0.61 1.3E-05 30.9 6.4 47 41-94 11-60 (97)
183 PHA03050 glutaredoxin; Provisi 92.8 0.48 1E-05 32.2 5.9 15 51-65 20-34 (108)
184 cd03023 DsbA_Com1_like DsbA fa 92.7 0.16 3.5E-06 35.7 3.6 40 41-81 5-44 (154)
185 cd03027 GRX_DEP Glutaredoxin ( 92.5 0.7 1.5E-05 28.5 6.1 29 50-85 7-35 (73)
186 cd03029 GRX_hybridPRX5 Glutare 92.5 0.47 1E-05 29.2 5.2 31 49-86 6-36 (72)
187 PF13462 Thioredoxin_4: Thiore 92.0 0.36 7.7E-06 34.4 4.8 49 34-83 5-54 (162)
188 TIGR02194 GlrX_NrdH Glutaredox 91.9 0.54 1.2E-05 29.1 4.9 33 48-87 3-35 (72)
189 cd03419 GRX_GRXh_1_2_like Glut 91.9 0.53 1.1E-05 29.5 5.0 34 47-85 3-36 (82)
190 PRK10329 glutaredoxin-like pro 91.6 1 2.2E-05 28.8 6.1 32 48-86 5-36 (81)
191 PRK10638 glutaredoxin 3; Provi 91.5 0.95 2.1E-05 28.8 5.9 32 48-86 6-37 (83)
192 cd03418 GRX_GRXb_1_3_like Glut 91.5 1.1 2.3E-05 27.6 6.0 31 48-85 4-34 (75)
193 cd02979 PHOX_C FAD-dependent P 91.3 4.4 9.6E-05 29.6 11.2 121 5-144 1-152 (167)
194 TIGR02181 GRX_bact Glutaredoxi 90.9 0.79 1.7E-05 28.7 5.0 31 48-85 3-33 (79)
195 TIGR03765 ICE_PFL_4695 integra 90.8 2 4.3E-05 29.0 6.9 67 60-138 36-102 (105)
196 PRK06184 hypothetical protein; 90.6 3.5 7.6E-05 35.4 10.2 108 2-165 386-495 (502)
197 COG0695 GrxC Glutaredoxin and 90.2 1.4 3E-05 28.1 5.7 41 49-96 6-48 (80)
198 TIGR02183 GRXA Glutaredoxin, G 90.0 0.65 1.4E-05 29.9 4.1 36 47-84 3-38 (86)
199 COG3054 Predicted transcriptio 89.9 1.2 2.5E-05 32.2 5.5 151 2-164 23-182 (184)
200 KOG1731|consensus 89.9 0.1 2.2E-06 45.1 0.2 53 42-96 58-112 (606)
201 PRK06183 mhpA 3-(3-hydroxyphen 89.7 4.7 0.0001 35.0 10.3 119 3-164 412-531 (538)
202 PF11072 DUF2859: Protein of u 89.2 3.1 6.6E-05 29.7 7.2 67 60-138 74-140 (142)
203 PRK15317 alkyl hydroperoxide r 88.6 5 0.00011 34.7 9.6 29 42-70 116-144 (517)
204 PF06491 Disulph_isomer: Disul 88.4 6.8 0.00015 27.5 8.3 36 127-163 95-130 (136)
205 TIGR02189 GlrX-like_plant Glut 88.1 1 2.2E-05 29.9 4.1 35 42-85 8-42 (99)
206 PF07976 Phe_hydrox_dim: Pheno 86.4 4.4 9.5E-05 29.7 7.0 108 2-121 30-165 (169)
207 cd03028 GRX_PICOT_like Glutare 86.2 7 0.00015 25.2 7.5 39 40-85 6-47 (90)
208 cd02977 ArsC_family Arsenate R 86.1 1.3 2.8E-05 29.6 3.7 43 47-96 2-48 (105)
209 cd03032 ArsC_Spx Arsenate Redu 85.8 2.1 4.5E-05 29.2 4.7 64 46-120 2-69 (115)
210 cd03019 DsbA_DsbA DsbA family, 85.5 1.8 3.9E-05 31.3 4.6 38 40-79 14-51 (178)
211 cd03036 ArsC_like Arsenate Red 84.7 1.6 3.5E-05 29.6 3.7 42 48-96 3-48 (111)
212 PRK01655 spxA transcriptional 84.6 1.9 4.2E-05 30.2 4.2 65 46-121 2-70 (131)
213 cd02972 DsbA_family DsbA famil 84.5 3.2 6.9E-05 26.2 5.0 33 49-82 4-36 (98)
214 PF08235 LNS2: LNS2 (Lipin/Ned 83.5 13 0.00029 27.0 8.1 74 24-110 5-83 (157)
215 TIGR01617 arsC_related transcr 83.4 2.8 6E-05 28.6 4.5 61 48-119 3-67 (117)
216 TIGR02742 TrbC_Ftype type-F co 82.9 14 0.0003 26.0 9.3 68 62-138 12-82 (130)
217 PRK08132 FAD-dependent oxidore 82.7 13 0.00027 32.4 9.3 115 3-163 428-543 (547)
218 PRK10824 glutaredoxin-4; Provi 82.5 5.8 0.00013 27.3 5.7 24 42-66 15-42 (115)
219 TIGR03140 AhpF alkyl hydropero 82.5 15 0.00032 31.8 9.6 29 42-70 117-145 (515)
220 COG2179 Predicted hydrolase of 80.7 5.4 0.00012 29.4 5.3 46 59-108 46-91 (175)
221 KOG4277|consensus 80.2 4.3 9.3E-05 32.8 5.0 32 43-75 45-76 (468)
222 PRK08294 phenol 2-monooxygenas 80.1 33 0.00072 30.7 11.1 124 2-144 463-615 (634)
223 PRK12559 transcriptional regul 79.6 4.2 9.2E-05 28.5 4.4 65 46-121 2-70 (131)
224 cd02983 P5_C P5 family, C-term 77.9 20 0.00044 25.0 7.4 50 113-169 70-119 (130)
225 PRK12759 bifunctional gluaredo 77.3 5.5 0.00012 33.6 5.2 39 49-94 7-45 (410)
226 PTZ00062 glutaredoxin; Provisi 76.4 20 0.00044 27.2 7.5 48 40-94 111-161 (204)
227 PF09673 TrbC_Ftype: Type-F co 76.1 21 0.00045 24.3 6.9 68 62-136 11-80 (113)
228 PRK13344 spxA transcriptional 75.5 7.1 0.00015 27.4 4.6 63 47-120 3-69 (132)
229 PRK10954 periplasmic protein d 75.2 2.9 6.3E-05 31.5 2.8 39 40-80 36-77 (207)
230 TIGR03759 conj_TIGR03759 integ 75.2 7 0.00015 29.5 4.6 47 44-96 111-158 (200)
231 KOG0911|consensus 74.2 2.5 5.4E-05 32.5 2.1 46 40-88 16-61 (227)
232 KOG2116|consensus 73.2 11 0.00025 33.6 6.0 74 33-114 540-618 (738)
233 COG1651 DsbG Protein-disulfide 72.8 7.4 0.00016 29.9 4.5 41 35-76 78-118 (244)
234 KOG0914|consensus 71.9 2.7 5.8E-05 32.4 1.7 36 42-78 145-180 (265)
235 PF05768 DUF836: Glutaredoxin- 70.2 3.4 7.5E-05 26.2 1.8 53 46-108 2-54 (81)
236 PF08821 CGGC: CGGC domain; I 70.2 18 0.0004 24.5 5.4 47 32-83 26-73 (107)
237 PHA03075 glutaredoxin-like pro 69.5 3.4 7.4E-05 28.4 1.7 40 42-82 2-41 (123)
238 PF06764 DUF1223: Protein of u 69.0 48 0.001 25.1 10.5 89 46-165 2-98 (202)
239 TIGR03143 AhpF_homolog putativ 68.6 53 0.0011 28.8 9.3 43 111-161 408-453 (555)
240 PRK13601 putative L7Ae-like ri 68.3 23 0.00051 22.7 5.4 56 65-121 14-69 (82)
241 PTZ00106 60S ribosomal protein 68.0 35 0.00075 23.1 6.9 56 65-120 31-86 (108)
242 PRK01018 50S ribosomal protein 65.6 37 0.0008 22.5 6.8 57 64-120 21-77 (99)
243 COG0525 ValS Valyl-tRNA synthe 65.5 8 0.00017 35.7 3.7 111 51-164 172-327 (877)
244 cd03035 ArsC_Yffb Arsenate Red 64.6 12 0.00025 25.2 3.6 43 47-96 2-48 (105)
245 PF03544 TonB_C: Gram-negative 63.1 15 0.00033 22.5 3.8 35 129-163 19-54 (79)
246 PF04278 Tic22: Tic22-like fam 61.9 10 0.00022 30.2 3.3 83 7-111 74-161 (274)
247 KOG0098|consensus 61.8 20 0.00043 27.1 4.6 76 21-105 58-146 (216)
248 COG1393 ArsC Arsenate reductas 61.1 11 0.00024 25.9 3.0 64 46-120 3-70 (117)
249 KOG4614|consensus 60.8 14 0.0003 28.8 3.7 37 128-165 248-284 (287)
250 PF02114 Phosducin: Phosducin; 59.9 26 0.00056 27.8 5.3 90 41-165 146-238 (265)
251 COG1180 PflA Pyruvate-formate 58.0 20 0.00044 28.2 4.4 82 30-111 23-120 (260)
252 PRK10026 arsenate reductase; P 56.7 57 0.0012 23.2 6.1 96 46-161 4-116 (141)
253 TIGR00995 3a0901s06TIC22 chlor 56.3 31 0.00068 27.4 5.1 82 6-111 80-161 (270)
254 TIGR00099 Cof-subfamily Cof su 56.0 91 0.002 23.9 8.7 32 65-96 22-53 (256)
255 TIGR01352 tonB_Cterm TonB fami 55.8 28 0.00061 21.0 4.0 37 129-165 13-50 (74)
256 PRK12359 flavodoxin FldB; Prov 52.8 57 0.0012 24.0 5.8 35 131-165 130-165 (172)
257 KOG0084|consensus 52.0 89 0.0019 23.8 6.7 59 20-82 60-121 (205)
258 cd03060 GST_N_Omega_like GST_N 50.5 42 0.00092 20.1 4.2 17 49-65 4-20 (71)
259 PF01106 NifU: NifU-like domai 50.3 51 0.0011 20.2 4.5 31 32-64 17-47 (68)
260 PHA02762 hypothetical protein; 49.6 25 0.00055 20.6 2.7 31 129-161 29-59 (62)
261 KOG2961|consensus 48.2 86 0.0019 23.0 5.8 69 33-109 34-115 (190)
262 PRK13602 putative ribosomal pr 47.7 72 0.0016 20.3 5.0 57 64-121 16-72 (82)
263 PF06053 DUF929: Domain of unk 46.6 32 0.00069 27.1 3.8 32 40-72 57-88 (249)
264 cd01427 HAD_like Haloacid deha 45.6 55 0.0012 21.5 4.6 38 59-96 24-61 (139)
265 PF13103 TonB_2: TonB C termin 45.5 30 0.00065 21.7 3.0 40 127-166 27-67 (85)
266 PF05228 CHASE4: CHASE4 domain 45.3 48 0.001 23.3 4.4 16 130-145 52-67 (161)
267 PRK06683 hypothetical protein; 45.2 80 0.0017 20.1 5.3 56 65-121 17-72 (82)
268 PRK15126 thiamin pyrimidine py 45.0 1.4E+02 0.0031 23.0 8.7 32 65-96 25-56 (272)
269 PF00875 DNA_photolyase: DNA p 43.4 1E+02 0.0022 22.0 5.9 36 61-96 52-87 (165)
270 KOG2603|consensus 43.3 1.8E+02 0.004 23.8 8.6 100 43-166 61-167 (331)
271 PRK05583 ribosomal protein L7A 43.2 1E+02 0.0022 20.7 7.0 55 65-120 23-77 (104)
272 TIGR01662 HAD-SF-IIIA HAD-supe 42.6 1E+02 0.0022 20.8 5.6 36 61-96 27-70 (132)
273 PF04723 GRDA: Glycine reducta 42.4 35 0.00075 24.3 3.0 35 51-85 37-78 (150)
274 KOG1752|consensus 41.5 1.1E+02 0.0023 20.6 6.2 35 42-85 14-48 (104)
275 cd03034 ArsC_ArsC Arsenate Red 40.8 47 0.001 22.3 3.6 62 48-120 3-68 (112)
276 PRK05778 2-oxoglutarate ferred 40.6 39 0.00084 27.3 3.6 25 49-74 16-40 (301)
277 PF08394 Arc_trans_TRASH: Arch 40.3 21 0.00045 19.3 1.4 14 46-62 21-34 (37)
278 cd03031 GRX_GRX_like Glutaredo 40.3 1.4E+02 0.003 21.4 6.0 26 53-85 15-40 (147)
279 COG0552 FtsY Signal recognitio 40.1 1.5E+02 0.0033 24.5 6.8 108 40-162 136-251 (340)
280 PRK10178 D-alanyl-D-alanine di 40.1 1.6E+02 0.0034 22.1 8.8 94 36-145 26-120 (184)
281 PRK10976 putative hydrolase; P 40.0 1.7E+02 0.0037 22.5 7.7 32 65-96 25-56 (266)
282 PF11211 DUF2997: Protein of u 39.8 74 0.0016 18.2 4.0 15 131-145 2-16 (48)
283 PF02743 Cache_1: Cache domain 39.4 18 0.0004 22.4 1.3 17 128-144 53-69 (81)
284 PRK07714 hypothetical protein; 39.1 1.1E+02 0.0024 20.1 7.1 56 64-120 23-78 (100)
285 PF12681 Glyoxalase_2: Glyoxal 38.7 87 0.0019 19.8 4.6 15 129-143 93-107 (108)
286 PF01323 DSBA: DSBA-like thior 38.6 35 0.00076 24.8 2.9 40 47-86 3-42 (193)
287 COG3019 Predicted metal-bindin 38.4 1.2E+02 0.0026 21.7 5.3 41 44-91 26-66 (149)
288 COG1490 Dtd D-Tyr-tRNAtyr deac 38.3 43 0.00094 23.8 3.0 35 76-114 28-62 (145)
289 COG5429 Uncharacterized secret 38.2 1.6E+02 0.0034 23.1 6.3 35 44-83 43-77 (261)
290 COG1331 Highly conserved prote 37.8 2E+02 0.0044 26.0 7.7 103 37-163 39-148 (667)
291 TIGR01668 YqeG_hyp_ppase HAD s 37.3 1.2E+02 0.0025 22.0 5.4 38 59-96 43-81 (170)
292 PRK06126 hypothetical protein; 37.0 1.9E+02 0.0042 25.0 7.6 15 130-144 514-528 (545)
293 TIGR03677 rpl7ae 50S ribosomal 36.4 1.4E+02 0.003 20.4 7.0 56 64-120 31-87 (117)
294 PF08448 PAS_4: PAS fold; Int 36.3 36 0.00079 21.5 2.4 16 130-145 7-22 (110)
295 PF13419 HAD_2: Haloacid dehal 36.2 1.4E+02 0.0031 20.5 6.8 36 61-96 79-114 (176)
296 KOG0913|consensus 35.4 4.9 0.00011 31.2 -2.1 29 40-70 39-67 (248)
297 PF00702 Hydrolase: haloacid d 35.3 1.7E+02 0.0038 21.2 7.1 36 61-96 129-164 (215)
298 PF01740 STAS: STAS domain; I 35.1 66 0.0014 21.3 3.6 42 42-85 49-90 (117)
299 cd03025 DsbA_FrnE_like DsbA fa 34.7 53 0.0011 23.8 3.3 27 46-72 3-29 (193)
300 cd08356 Glo_EDI_BRP_like_17 Th 34.4 1.3E+02 0.0029 19.7 5.0 51 78-143 58-111 (113)
301 COG3529 Predicted nucleic-acid 34.0 46 0.001 20.1 2.3 27 48-79 7-33 (66)
302 TIGR00014 arsC arsenate reduct 33.3 81 0.0018 21.3 3.8 42 48-96 3-48 (114)
303 COG3322 Predicted periplasmic 32.8 47 0.001 26.8 2.9 33 130-162 106-141 (295)
304 PF00989 PAS: PAS fold; Inter 32.5 43 0.00093 21.3 2.3 16 130-145 13-28 (113)
305 cd05008 SIS_GlmS_GlmD_1 SIS (S 32.1 70 0.0015 21.4 3.4 30 62-91 60-89 (126)
306 cd05017 SIS_PGI_PMI_1 The memb 32.1 1.6E+02 0.0034 19.7 5.2 33 62-96 57-89 (119)
307 PF08282 Hydrolase_3: haloacid 31.6 2.1E+02 0.0046 21.1 8.2 75 64-164 20-94 (254)
308 COG2607 Predicted ATPase (AAA+ 31.5 2.7E+02 0.0058 22.2 6.9 60 61-121 99-163 (287)
309 TIGR01485 SPP_plant-cyano sucr 31.2 2.4E+02 0.0052 21.5 7.3 39 58-96 20-58 (249)
310 COG1636 Uncharacterized protei 31.2 2.3E+02 0.0051 21.4 6.6 26 53-84 11-36 (204)
311 KOG0780|consensus 30.7 3.5E+02 0.0075 23.2 7.9 40 39-85 97-139 (483)
312 PF07411 DUF1508: Domain of un 30.2 1E+02 0.0022 17.5 3.3 34 130-164 7-40 (49)
313 PF13426 PAS_9: PAS domain; PD 29.6 55 0.0012 20.3 2.4 16 130-145 3-18 (104)
314 PF01924 HypD: Hydrogenase for 29.4 1.2E+02 0.0026 25.2 4.6 36 46-81 49-84 (355)
315 cd00570 GST_N_family Glutathio 29.4 93 0.002 17.5 3.3 17 49-65 4-20 (71)
316 TIGR02461 osmo_MPG_phos mannos 29.4 2.5E+02 0.0055 21.3 8.5 33 64-96 20-52 (225)
317 PF05673 DUF815: Protein of un 29.2 1.8E+02 0.0039 22.9 5.5 48 61-109 66-113 (249)
318 PF03960 ArsC: ArsC family; I 29.0 1.1E+02 0.0025 20.2 3.9 50 66-119 11-64 (110)
319 cd05013 SIS_RpiR RpiR-like pro 28.6 1.8E+02 0.0038 19.4 5.0 30 62-91 74-103 (139)
320 KOG3414|consensus 28.4 2.2E+02 0.0047 20.1 6.5 43 41-85 23-65 (142)
321 PRK07283 hypothetical protein; 28.3 1.8E+02 0.0038 19.1 4.9 54 65-119 24-77 (98)
322 PF08806 Sep15_SelM: Sep15/Sel 28.1 69 0.0015 20.3 2.5 34 127-163 41-74 (78)
323 cd07241 Glo_EDI_BRP_like_3 Thi 27.9 1.7E+02 0.0037 18.8 5.5 55 74-142 69-123 (125)
324 PRK11869 2-oxoacid ferredoxin 27.9 79 0.0017 25.3 3.4 24 49-73 6-29 (280)
325 cd05014 SIS_Kpsf KpsF-like pro 27.8 69 0.0015 21.5 2.8 31 61-91 60-90 (128)
326 TIGR02177 PorB_KorB 2-oxoacid: 27.7 86 0.0019 25.2 3.6 21 52-73 2-22 (287)
327 TIGR03556 photolyase_8HDF deox 27.7 4E+02 0.0086 22.9 7.9 37 60-96 53-89 (471)
328 PRK11867 2-oxoglutarate ferred 27.6 88 0.0019 25.1 3.6 20 52-72 18-37 (286)
329 COG3769 Predicted hydrolase (H 26.9 1.5E+02 0.0033 23.2 4.6 44 66-113 30-74 (274)
330 COG0810 TonB Periplasmic prote 26.8 1.9E+02 0.004 22.4 5.3 50 112-165 170-220 (244)
331 PF09897 DUF2124: Uncharacteri 26.5 1.4E+02 0.0029 21.6 4.0 58 44-110 83-140 (147)
332 smart00775 LNS2 LNS2 domain. T 26.4 86 0.0019 22.5 3.1 35 101-141 118-155 (157)
333 cd04821 PA_M28_1_2 PA_M28_1_2: 26.4 2.6E+02 0.0055 20.3 5.9 23 61-83 78-101 (157)
334 PF03193 DUF258: Protein of un 26.1 2E+02 0.0044 20.9 5.0 43 65-111 2-44 (161)
335 PF01217 Clat_adaptor_s: Clath 26.0 1.2E+02 0.0026 21.1 3.8 32 130-161 4-35 (141)
336 PTZ00222 60S ribosomal protein 25.9 3.4E+02 0.0073 21.6 7.8 95 64-174 137-234 (263)
337 COG1489 SfsA DNA-binding prote 25.8 2.1E+02 0.0045 22.4 5.2 28 56-83 186-213 (235)
338 COG0409 HypD Hydrogenase matur 25.8 1.2E+02 0.0025 25.1 3.9 37 45-81 55-91 (364)
339 PF12710 HAD: haloacid dehalog 25.7 1.2E+02 0.0025 21.8 3.8 29 66-94 96-124 (192)
340 PRK10200 putative racemase; Pr 25.3 2E+02 0.0042 22.1 5.1 44 60-108 60-103 (230)
341 PRK15062 hydrogenase isoenzyme 25.1 1.5E+02 0.0032 24.8 4.5 36 46-81 54-89 (364)
342 PF02563 Poly_export: Polysacc 24.9 53 0.0011 20.7 1.6 36 130-165 31-67 (82)
343 PF12017 Tnp_P_element: Transp 24.8 3.4E+02 0.0073 21.2 6.4 26 61-86 195-220 (236)
344 TIGR01488 HAD-SF-IB Haloacid D 24.7 2.5E+02 0.0055 19.7 5.6 38 101-142 89-130 (177)
345 PF06018 CodY: CodY GAF-like d 24.6 1.5E+02 0.0033 22.0 4.2 17 129-145 36-52 (177)
346 PF13344 Hydrolase_6: Haloacid 24.6 1.2E+02 0.0025 20.0 3.3 35 61-95 16-50 (101)
347 KOG1503|consensus 24.5 3.6E+02 0.0078 21.4 8.4 94 64-166 156-272 (354)
348 cd08357 Glo_EDI_BRP_like_18 Th 24.3 1.9E+02 0.0041 18.7 4.5 16 129-144 108-123 (125)
349 PF10673 DUF2487: Protein of u 24.2 2.5E+02 0.0054 20.1 5.0 23 63-85 72-95 (142)
350 TIGR02463 MPGP_rel mannosyl-3- 24.2 2.7E+02 0.0059 20.6 5.7 32 65-96 22-53 (221)
351 KOG2507|consensus 24.1 1.7E+02 0.0037 25.1 4.7 20 127-146 77-96 (506)
352 COG4545 Glutaredoxin-related p 24.1 83 0.0018 20.0 2.2 38 51-94 9-46 (85)
353 cd07238 Glo_EDI_BRP_like_5 Thi 24.0 2E+02 0.0044 18.3 5.0 51 77-144 59-109 (112)
354 PRK05370 argininosuccinate syn 23.9 1.7E+02 0.0037 25.2 4.8 70 35-118 4-81 (447)
355 cd05710 SIS_1 A subgroup of th 23.9 88 0.0019 21.1 2.7 31 61-91 60-90 (120)
356 PF12617 LdpA_C: Iron-Sulfur b 23.8 1.6E+02 0.0035 22.0 4.1 35 60-94 19-55 (183)
357 PRK04011 peptide chain release 23.6 1.4E+02 0.003 25.3 4.3 26 62-87 367-392 (411)
358 PF02966 DIM1: Mitosis protein 23.4 1.8E+02 0.004 20.5 4.1 43 41-85 20-62 (133)
359 PF00585 Thr_dehydrat_C: C-ter 23.4 2.2E+02 0.0047 18.4 4.6 41 74-117 49-89 (91)
360 PRK11866 2-oxoacid ferredoxin 23.2 1.3E+02 0.0027 24.1 3.7 21 51-71 7-29 (279)
361 PRK13265 glycine/sarcosine/bet 23.1 72 0.0016 22.7 2.1 35 51-85 38-79 (154)
362 PF09419 PGP_phosphatase: Mito 23.1 3.1E+02 0.0067 20.1 6.2 50 34-84 29-86 (168)
363 TIGR00075 hypD hydrogenase exp 23.0 1.6E+02 0.0036 24.5 4.4 36 46-81 60-95 (369)
364 KOG0805|consensus 23.0 3.9E+02 0.0085 21.3 7.9 31 51-81 25-56 (337)
365 COG0415 PhrB Deoxyribodipyrimi 23.0 2E+02 0.0044 24.9 5.1 37 60-96 53-89 (461)
366 PRK14894 glycyl-tRNA synthetas 22.9 5.4E+02 0.012 22.8 7.6 59 104-164 466-536 (539)
367 PRK06724 hypothetical protein; 22.9 2E+02 0.0043 19.6 4.3 16 129-144 106-121 (128)
368 cd01450 vWFA_subfamily_ECM Von 22.9 2.5E+02 0.0055 19.1 6.7 32 51-85 111-142 (161)
369 PF14062 DUF4253: Domain of un 22.9 1.7E+02 0.0038 19.7 3.9 40 54-96 26-76 (111)
370 PF11720 Inhibitor_I78: Peptid 22.6 97 0.0021 18.4 2.4 18 127-144 41-58 (60)
371 TIGR01490 HAD-SF-IB-hyp1 HAD-s 22.6 3E+02 0.0064 20.0 5.6 26 69-94 97-122 (202)
372 PRK04596 minC septum formation 22.5 2.6E+02 0.0056 22.0 5.2 45 39-87 48-92 (248)
373 PTZ00007 (NAP-L) nucleosome as 22.4 36 0.00078 28.0 0.5 15 166-180 180-194 (337)
374 COG1358 RPL8A Ribosomal protei 22.4 2.7E+02 0.0058 19.1 5.4 59 62-121 30-89 (116)
375 KOG3859|consensus 22.4 42 0.00091 27.2 0.9 53 56-111 189-242 (406)
376 TIGR02743 TraW type-F conjugat 22.3 3.6E+02 0.0077 20.5 8.3 52 75-143 148-199 (202)
377 TIGR03831 YgiT_finger YgiT-typ 22.2 54 0.0012 17.7 1.1 23 38-60 19-41 (46)
378 PRK10530 pyridoxal phosphate ( 22.2 3.6E+02 0.0078 20.6 8.6 32 65-96 26-57 (272)
379 COG0561 Cof Predicted hydrolas 22.1 3.7E+02 0.0079 20.6 8.6 78 60-164 21-98 (264)
380 PF00571 CBS: CBS domain CBS d 21.9 1.6E+02 0.0034 16.3 3.8 17 129-145 31-47 (57)
381 cd07262 Glo_EDI_BRP_like_19 Th 21.7 1.9E+02 0.0041 18.8 4.0 58 75-143 64-121 (123)
382 PF14427 Pput2613-deam: Pput_2 21.7 1.4E+02 0.003 20.5 3.1 30 33-63 58-87 (118)
383 PLN03098 LPA1 LOW PSII ACCUMUL 21.5 1.5E+02 0.0032 25.6 3.9 50 32-84 287-337 (453)
384 PLN02734 glycyl-tRNA synthetas 21.2 4.5E+02 0.0099 24.1 7.1 64 102-167 598-663 (684)
385 PF01380 SIS: SIS domain SIS d 21.1 2.3E+02 0.005 18.8 4.4 30 62-91 67-96 (131)
386 PF14903 WG_beta_rep: WG conta 21.1 67 0.0015 16.0 1.3 13 133-145 3-15 (35)
387 COG1167 ARO8 Transcriptional r 21.1 1.3E+02 0.0029 25.7 3.7 83 60-146 185-297 (459)
388 PRK10819 transport protein Ton 21.0 1.6E+02 0.0034 23.1 3.8 48 113-164 172-220 (246)
389 TIGR01752 flav_long flavodoxin 20.9 3.2E+02 0.007 19.5 5.7 28 138-165 135-163 (167)
390 PHA00649 hypothetical protein 20.6 66 0.0014 20.0 1.3 21 76-96 23-43 (83)
391 TIGR02826 RNR_activ_nrdG3 anae 20.6 1.1E+02 0.0024 21.8 2.7 26 33-58 6-33 (147)
392 PRK13738 conjugal transfer pil 20.5 4E+02 0.0086 20.4 9.2 93 32-145 109-201 (209)
393 PRK09267 flavodoxin FldA; Vali 20.5 3.3E+02 0.0071 19.4 5.4 10 155-164 154-163 (169)
394 cd03041 GST_N_2GST_N GST_N fam 20.1 2.2E+02 0.0047 17.2 6.0 15 48-62 4-18 (77)
395 TIGR00338 serB phosphoserine p 20.1 2.1E+02 0.0046 21.1 4.4 33 63-95 89-121 (219)
396 cd08350 BLMT_like BLMT, a bleo 20.1 2.6E+02 0.0057 18.2 5.1 16 129-144 102-117 (120)
No 1
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-41 Score=244.74 Aligned_cols=172 Identities=39% Similarity=0.722 Sum_probs=156.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+.+|+.+|+|++.++. .| +-+.+++|+++.|||+||+||++.++++|++|+..+++.|++|+++|++|||
T Consensus 2 ~~lIg~~aP~F~~~a~~--------~~-~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVig 72 (194)
T COG0450 2 MSLIGKKAPDFTANAVL--------GG-EIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIG 72 (194)
T ss_pred ccccCCcCCCcEEEEEe--------cC-ceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEE
Confidence 57799999999999541 33 1234999999989999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHH---cCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRRE---NSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~---~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
||.|+..++.+|++. ..+..+++||+++|+++++++.|||. ...|.+.|++|||||+|+|++..+++.+.++++++
T Consensus 73 vS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dE 152 (194)
T COG0450 73 VSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDE 152 (194)
T ss_pred EecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHH
Confidence 999999999999997 44455689999999999999999999 57788899999999999999999999999999999
Q ss_pred HHHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
+++.|+++|- ++.||+||.+|+++|
T Consensus 153 ilR~idAlq~~~~hg~vcPanW~~G~~~i 181 (194)
T COG0450 153 ILRVIDALQFVAKHGEVCPANWKPGDKTI 181 (194)
T ss_pred HHHHHHHHHHHHHhCCCccCCCCCCCccc
Confidence 9999999994 889999999999986
No 2
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=100.00 E-value=1.5e-40 Score=248.31 Aligned_cols=171 Identities=32% Similarity=0.604 Sum_probs=154.1
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|..+|.++|+|+.++.. +| .+.+++|++++||++||+||++.|||+|+.|++.|++++++|++.|+++++
T Consensus 1 ~~~~~~~~p~f~~~~~~--------~g--~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vig 70 (187)
T PRK10382 1 MSLINTKIKPFKNQAFK--------NG--EFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYS 70 (187)
T ss_pred CCccCCcCCCcEEEEEe--------CC--cceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 78899999999999643 23 337899999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
||.|+.+.+++|++......+++||+++|++.++++.||+. ...|.+.|++||||++|+|++.+.+..+..++.+++++
T Consensus 71 IS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~ 150 (187)
T PRK10382 71 VSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLR 150 (187)
T ss_pred EeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHH
Confidence 99999999999998753345889999999999999999997 44577789999999999999999877788889999999
Q ss_pred HHHhhcc-----CCccccCCCCCCCCC
Q psy2878 160 ILDAIQT-----GKLCACNRTLNGKTL 181 (181)
Q Consensus 160 ~l~~l~~-----~~~~~~~~~~~~~~~ 181 (181)
.|+++|. ++.||+||++|+.+|
T Consensus 151 ~l~alq~~~~~~g~~~p~~w~~~~~~~ 177 (187)
T PRK10382 151 KIKAAQYVASHPGEVCPAKWKEGEATL 177 (187)
T ss_pred HHHhhhhHhhcCCeEeCCCCCcCCcce
Confidence 9999994 688999999999875
No 3
>PRK13190 putative peroxiredoxin; Provisional
Probab=100.00 E-value=9.2e-40 Score=247.54 Aligned_cols=167 Identities=26% Similarity=0.458 Sum_probs=150.2
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+.+|+.+|+|+++ +..| .++|++++||++||+||+++|||+|+.+++.|++++++|+++|+++++
T Consensus 1 ~~~vG~~aP~F~~~---------~~~g-----~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~ 66 (202)
T PRK13190 1 PVKLGQKAPDFTVN---------TTKG-----PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVG 66 (202)
T ss_pred CCCCCCCCCCcEEe---------cCCC-----cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 68899999999999 6666 589999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCcc--cceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYK--LNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
||.|+.+.+.+|+++.....+ ++||+++|+++++++.||+. ...|.+.|++||||++|+|++.+.++...+++.+++
T Consensus 67 vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~el 146 (202)
T PRK13190 67 LSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEI 146 (202)
T ss_pred EeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHH
Confidence 999999999888875433233 68999999999999999997 455667899999999999999998888888999999
Q ss_pred HHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 158 LRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 158 l~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
+++|++++. +..||+||++|+++|
T Consensus 147 lr~l~~l~~~~~~~~~~p~~w~~g~~~~ 174 (202)
T PRK13190 147 IRITKALQVNWKRKVATPANWQPGQEGI 174 (202)
T ss_pred HHHHHHhhhHHhcCCCcCCCCCcCCcee
Confidence 999999985 789999999999985
No 4
>PRK15000 peroxidase; Provisional
Probab=100.00 E-value=6.5e-39 Score=242.32 Aligned_cols=173 Identities=30% Similarity=0.567 Sum_probs=148.4
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|..+|+.+|+|++++.. .+| +....++|+++ +||++||+||+++|||+|+.|++.|++++++|+++|++||
T Consensus 1 ~~~vg~~aPdF~~~~~~-------~~g-~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vi 72 (200)
T PRK15000 1 MVLVTRQAPDFTAAAVL-------GSG-EIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVV 72 (200)
T ss_pred CCcCCCcCCCCEeeccc-------CCC-ceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 56799999999999321 134 00124566666 7999999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 80 GGSSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
+||.|+.+.+++|.+.... ..+++||+++|++.++++.||+. ...|.+.|++||||++|+|++.+.++.+.+++.+
T Consensus 73 gvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~ 152 (200)
T PRK15000 73 GVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNID 152 (200)
T ss_pred EEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHH
Confidence 9999999999888764222 22469999999999999999998 5567788999999999999999988888999999
Q ss_pred HHHHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 156 ETLRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 156 ~ll~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
+++++|+++|. ++.||+||.+|+++|
T Consensus 153 eilr~l~al~~~~~~~~~~p~~w~~g~~~~ 182 (200)
T PRK15000 153 EMLRMVDALQFHEEHGDVCPAQWEKGKEGM 182 (200)
T ss_pred HHHHHHHHhhhHHhcCCCcCCCCCCCCcee
Confidence 99999999985 789999999999975
No 5
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=100.00 E-value=1.5e-38 Score=247.39 Aligned_cols=171 Identities=30% Similarity=0.609 Sum_probs=150.2
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|+.+|+.+|+|++++. .+| ....++|+++ +||++||+||+++|||+|+.|++.|++++++|+++|++|+
T Consensus 67 ~~~vGd~aPdF~l~~~--------~~g--~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~Vi 136 (261)
T PTZ00137 67 SSLVGKLMPSFKGTAL--------LND--DLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVL 136 (261)
T ss_pred cccCCCCCCCCEeecc--------cCC--CceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 4679999999999831 233 1157999998 8899999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 80 GGSSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
+||.|+++.+++|++...+ ..+++||+++|++.++++.||+....|.+.|++||||++|+|++.+.++.+.++++++
T Consensus 137 gIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~e 216 (261)
T PTZ00137 137 GVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDE 216 (261)
T ss_pred EEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHH
Confidence 9999999899999874211 2478999999999999999999844567789999999999999999888888999999
Q ss_pred HHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
++++|+++| +++.||+||.+|+++|
T Consensus 217 iLr~l~alq~~~~~g~~cPanW~~g~~~~ 245 (261)
T PTZ00137 217 TLRLFDAVQFAEKTGNVCPVNWKQGDQAM 245 (261)
T ss_pred HHHHHHHhchhhhcCCCcCCCCCcCCcee
Confidence 999999999 4789999999999875
No 6
>PRK13191 putative peroxiredoxin; Provisional
Probab=100.00 E-value=2.9e-38 Score=241.01 Aligned_cols=167 Identities=28% Similarity=0.473 Sum_probs=146.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeec-CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITE-SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l-~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|+.+|+++|+|+++ +.+| + +.+ ++++||++||+||+++|||+|+.|++.|++++++|+++|++|+
T Consensus 6 ~~~iG~~aPdF~l~---------~~~G----~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~Vi 71 (215)
T PRK13191 6 IPLIGEKFPEMEVI---------TTHG----K-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELI 71 (215)
T ss_pred cccCCCcCCCCEee---------cCCC----C-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEE
Confidence 57799999999999 7788 6 455 5589999999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCC--CcccceeEEEcCCchHHHHhCCC-CC-CCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 80 GGSSDNEFVKLAWRRENSN--LYKLNHWQFSDTNGSLIDQLGIR-HE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~gv~-~~-~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
+||.|+...+++|.+.... ..+++||+++|+++++++.||++ .. .+.+.|++||||++|+|++++.++.+.+++++
T Consensus 72 gvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~ 151 (215)
T PRK13191 72 GLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNID 151 (215)
T ss_pred EEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHH
Confidence 9999999999888763211 12688999999999999999998 22 24568999999999999999988888899999
Q ss_pred HHHHHHHhhcc----CCccccCCCC----CCCCC
Q psy2878 156 ETLRILDAIQT----GKLCACNRTL----NGKTL 181 (181)
Q Consensus 156 ~ll~~l~~l~~----~~~~~~~~~~----~~~~~ 181 (181)
+++++|+++|. ++.||+||++ |+++|
T Consensus 152 eilr~l~alq~~~~~~~~~P~~w~~~~~~g~~~~ 185 (215)
T PRK13191 152 EILRAIRALQLVDKAGVVTPANWPNNELIGDKVI 185 (215)
T ss_pred HHHHHHHHhhhhhhcCCCcCCCCCCCCCCCCcee
Confidence 99999999984 7899999997 88875
No 7
>PRK13599 putative peroxiredoxin; Provisional
Probab=100.00 E-value=5.6e-38 Score=239.37 Aligned_cols=168 Identities=31% Similarity=0.470 Sum_probs=149.1
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+.+|+.+|+|++. +.+| +...+++++||++||+||+++|||+|+.|++.|++++++|+++|+++||
T Consensus 1 ~~~~Gd~aPdF~l~---------t~~G----~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vig 67 (215)
T PRK13599 1 MKLLGEKFPSMEVV---------TTQG----VKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIG 67 (215)
T ss_pred CCCCCCCCCCCEeE---------CCCC----cEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 67899999999999 7888 8888899999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCC--CcccceeEEEcCCchHHHHhCCC-CCCC-cceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRRENSN--LYKLNHWQFSDTNGSLIDQLGIR-HETG-VALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~gv~-~~~g-~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
||.|+.+.+.+|.+.... ..+++||+++|+++++++.||+. ...+ .+.|++||||++|+|++++.++...+++.++
T Consensus 68 IS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~e 147 (215)
T PRK13599 68 LSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDE 147 (215)
T ss_pred EeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHH
Confidence 999999999988774322 23689999999999999999997 3223 2579999999999999999877788899999
Q ss_pred HHHHHHhhcc----CCccccCCCC----CCCCC
Q psy2878 157 TLRILDAIQT----GKLCACNRTL----NGKTL 181 (181)
Q Consensus 157 ll~~l~~l~~----~~~~~~~~~~----~~~~~ 181 (181)
++++|+++|. +..||+||.+ |++||
T Consensus 148 ilr~l~~lq~~~~~~~~~p~~w~~~~~~g~~~~ 180 (215)
T PRK13599 148 ILRALKALQTADQYGVALPEKWPNNYLIKDHVI 180 (215)
T ss_pred HHHHHHHhhhhhhcCCCcCCCCCCCCCCCCcEE
Confidence 9999999985 6799999999 88875
No 8
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=100.00 E-value=1e-37 Score=233.88 Aligned_cols=168 Identities=31% Similarity=0.638 Sum_probs=149.1
Q ss_pred CCccCccCCCcEEecccCCCCCCC-CCccccee--eeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPE-ENNVSAFK--VITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d-~~G~~~~~--~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~ 77 (181)
|..+|+.+|+|+++ + .+| + .+++++++||++||+||+++|||+|+.+++.|++++++|+++|++
T Consensus 1 ~~~~G~~aP~f~l~---------~~~~g----~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~ 67 (187)
T TIGR03137 1 MSLINTEIKPFKAT---------AYHNG----EFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVE 67 (187)
T ss_pred CCccCCcCCCcEee---------eccCC----ceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCc
Confidence 45689999999999 6 466 5 688899999999999999999999999999999999999999999
Q ss_pred EEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
||+||.|+.+.+++|.+......+++|++++|++.++++.||++ ...|++.|++||||++|+|++.+.......++.++
T Consensus 68 vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ 147 (187)
T TIGR03137 68 VYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASE 147 (187)
T ss_pred EEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHH
Confidence 99999999999999887643345789999999999999999998 44566789999999999999999866677789999
Q ss_pred HHHHHHhhcc-----CCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQT-----GKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~~-----~~~~~~~~~~~~~~~ 181 (181)
+++.|++++. ++.||++|.+|++++
T Consensus 148 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (187)
T TIGR03137 148 LLRKIKAAQYVAAHPGEVCPAKWKEGAETL 177 (187)
T ss_pred HHHHHHHhhhHHhcCCeeeCCCCCcCCccc
Confidence 9999998884 688999999999874
No 9
>PRK13189 peroxiredoxin; Provisional
Probab=100.00 E-value=1.6e-37 Score=238.15 Aligned_cols=167 Identities=32% Similarity=0.513 Sum_probs=146.9
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCC-CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESS-FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~-~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|+.+|+.+|+|+++ +.+| . +++++ ++||++||+||+++|||+|+.+++.|++++++|+++|++||
T Consensus 8 ~~~vG~~aPdF~~~---------~~~g----~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~Vi 73 (222)
T PRK13189 8 MPLIGDKFPEFEVK---------TTHG----P-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELI 73 (222)
T ss_pred cccCCCcCCCcEeE---------cCCC----C-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 57799999999999 6777 4 67776 49999999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCCC--cccceeEEEcCCchHHHHhCCC-CC-CCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 80 GGSSDNEFVKLAWRRENSNL--YKLNHWQFSDTNGSLIDQLGIR-HE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~gv~-~~-~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
+||.|+...+.+|.+..... .+++||+++|+++++++.||+. .. .+.+.|++||||++|+|++.+.++.+.+++.+
T Consensus 74 gvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~ 153 (222)
T PRK13189 74 GLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMD 153 (222)
T ss_pred EEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHH
Confidence 99999999999998864221 2579999999999999999998 22 23467999999999999999988888889999
Q ss_pred HHHHHHHhhcc----CCccccCCCCCC----CCC
Q psy2878 156 ETLRILDAIQT----GKLCACNRTLNG----KTL 181 (181)
Q Consensus 156 ~ll~~l~~l~~----~~~~~~~~~~~~----~~~ 181 (181)
+++++|+++|. ++.||+||++|+ ++|
T Consensus 154 eilr~l~alq~~~~~~~~~p~~w~~g~~~~~~~~ 187 (222)
T PRK13189 154 EILRLVKALQTSDEKGVATPANWPPNDLIKDKVI 187 (222)
T ss_pred HHHHHHHHhhhHhhcCcCcCCCCCCCCCCCCcee
Confidence 99999999984 689999999999 764
No 10
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=100.00 E-value=2e-37 Score=234.45 Aligned_cols=171 Identities=39% Similarity=0.694 Sum_probs=149.7
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+++|+|++.+.. .+.+| ++++|++++||++||+||++.||+.|+.++..|++++++|+++|++||+|
T Consensus 6 ~~~G~~aPdF~~~~~~-----~~~~~----~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~I 76 (199)
T PTZ00253 6 AKINHPAPSFEEVALM-----PNGSF----KKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLAC 76 (199)
T ss_pred cccCCcCCCCEeeccc-----cCCCC----cEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4689999999987321 14567 89999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 82 SSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
|.|+.+.+.+|...... ..+++||+++|++.++++.||++ ...|.+.|++||||++|+|++.+.+..+..++++++
T Consensus 77 S~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~ 156 (199)
T PTZ00253 77 SMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEV 156 (199)
T ss_pred eCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 99999888887653211 23589999999999999999998 555777899999999999999998777888999999
Q ss_pred HHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 158 LRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 158 l~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
+++|++++. +.+||+||++|+++|
T Consensus 157 l~~l~a~~~~~~~~~~cp~~w~~g~~~~ 184 (199)
T PTZ00253 157 LRLLEAFQFVEKHGEVCPANWKKGDPTM 184 (199)
T ss_pred HHHHHhhhhHHhcCCEeCCCCCcCCccc
Confidence 999999984 789999999999985
No 11
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=100.00 E-value=2.6e-37 Score=234.36 Aligned_cols=164 Identities=27% Similarity=0.467 Sum_probs=144.9
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
+|+.+|+|+++ +.+| . +++++++| |++||+||+++|||+|+.+++.|++++++|+++|++|++||
T Consensus 1 vG~~aP~F~~~---------~~~g----~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS 66 (203)
T cd03016 1 LGDTAPNFEAD---------TTHG----P-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLS 66 (203)
T ss_pred CcCCCCCeEEe---------cCCC----c-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 58999999999 7777 4 89999998 78999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHcCCC--cccceeEEEcCCchHHHHhCCC-CC--CCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 83 SDNEFVKLAWRRENSNL--YKLNHWQFSDTNGSLIDQLGIR-HE--TGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 83 ~d~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~gv~-~~--~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
.|+.+.+.+|.++.... .+++||+++|+++++++.||+. .. .+.+.|++||||++|+|++.+.++....++.+++
T Consensus 67 ~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~el 146 (203)
T cd03016 67 VDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEI 146 (203)
T ss_pred CCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHH
Confidence 99999999888752111 4789999999999999999998 32 2345789999999999999998888888899999
Q ss_pred HHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 158 LRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 158 l~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
+++|+++|. +..||+||.+|+++|
T Consensus 147 l~~l~~lq~~~~~~~~~p~~w~~g~~~~ 174 (203)
T cd03016 147 LRVVDALQLTDKHKVATPANWKPGDDVI 174 (203)
T ss_pred HHHHHHHhhHhhcCcCcCCCCCCCCcee
Confidence 999999984 478999999999875
No 12
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-36 Score=217.96 Aligned_cols=147 Identities=27% Similarity=0.500 Sum_probs=137.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+.+|+++|+|+++ +++| ++++|++++||++||+||+..++|.|..|+..|++.+++|++.|++|+|
T Consensus 3 ~l~~G~~aPdF~Lp---------~~~g----~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~G 69 (157)
T COG1225 3 MLKVGDKAPDFELP---------DQDG----ETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLG 69 (157)
T ss_pred cCCCCCcCCCeEee---------cCCC----CEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEE
Confidence 58899999999999 9999 9999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCC--C----cceeeEEEEcCCCcEEEEEeccCCCCCC
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HET--G----VALRATFIFDPQNIIQHITVNNLNVGRN 153 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~--g----~~~p~~~liD~~g~i~~~~~~~~~~~~~ 153 (181)
||.|+++.+++|++++ +++|++++|++.+++++||++ ... | .+.|++||||++|+|++.+ ....+..+
T Consensus 70 IS~Ds~~~~~~F~~k~----~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h 144 (157)
T COG1225 70 ISPDSPKSHKKFAEKH----GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGH 144 (157)
T ss_pred EeCCCHHHHHHHHHHh----CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCccc
Confidence 9999999999999998 999999999999999999998 222 1 3579999999999999999 57788899
Q ss_pred HHHHHHHHHhhc
Q psy2878 154 PIETLRILDAIQ 165 (181)
Q Consensus 154 ~~~ll~~l~~l~ 165 (181)
.++++++|+++.
T Consensus 145 ~~~vl~~l~~l~ 156 (157)
T COG1225 145 ADEVLAALKKLA 156 (157)
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
No 13
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=100.00 E-value=1.4e-35 Score=219.81 Aligned_cols=165 Identities=44% Similarity=0.778 Sum_probs=142.2
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
+|+.+|+|++++..| +.+| +.++|++++||++||+||+++|||.|+.+++.|++++++|++.|+.+++||.
T Consensus 1 vG~~aP~f~~~~~~g-----~~~~----~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~ 71 (173)
T cd03015 1 VGKKAPDFKATAVVP-----NGEF----KEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVST 71 (173)
T ss_pred CCCcCCCCEeecccC-----CCCc----eEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 599999999994432 0234 7899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 84 DNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 84 d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
|+.+.+++|.+.... ..+++|++++|+++++++.||+. ...+++.|++||||++|+|+++++...+..++.+++++
T Consensus 72 d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~ 151 (173)
T cd03015 72 DSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLR 151 (173)
T ss_pred CCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHH
Confidence 998887788776421 23689999999999999999998 44466788999999999999999866666778899999
Q ss_pred HHHhhc----cCCccccCCCCC
Q psy2878 160 ILDAIQ----TGKLCACNRTLN 177 (181)
Q Consensus 160 ~l~~l~----~~~~~~~~~~~~ 177 (181)
.|+.++ +++.||++|++|
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~ 173 (173)
T cd03015 152 VLDALQFVEEHGEVCPANWKPG 173 (173)
T ss_pred HHHHhhhhhhcCCCcCCCCCCC
Confidence 998876 568999999997
No 14
>KOG0852|consensus
Probab=100.00 E-value=1.1e-32 Score=197.42 Aligned_cols=171 Identities=37% Similarity=0.654 Sum_probs=154.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+.+..++|+|+...+ .+| .++.++|++|+||+++++||+..+.-+|+.++..+...+++|++.|.+|++
T Consensus 3 ~~~~~~p~p~fk~~aV--------VdG--~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig 72 (196)
T KOG0852|consen 3 MEVVFKPAPDFKGTAV--------VDG--EFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLG 72 (196)
T ss_pred ccccCCCCCCcceeEE--------EcC--cceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEE
Confidence 3556778899998864 455 568999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHc---CCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRREN---SNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
+|.|+...+.+|+..- .+...+++|+++|.+.++++.|||+ ...|.+.+..||||++|.++.+.++..++++..++
T Consensus 73 ~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE 152 (196)
T KOG0852|consen 73 ISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDE 152 (196)
T ss_pred EeccchhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHH
Confidence 9999999999999843 3344667999999999999999999 88899999999999999999999989999999999
Q ss_pred HHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
+++.+++.| +++-||++|+||.++|
T Consensus 153 ~lRLvqAfQ~td~~geVcPagW~pgs~ti 181 (196)
T KOG0852|consen 153 TLRLVQAFQFTDEHGEVCPAGWKPGSDTI 181 (196)
T ss_pred HHHHHHHHhhhhccCccccCCCCCCCccc
Confidence 999999998 5678999999999986
No 15
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.97 E-value=2.1e-30 Score=190.98 Aligned_cols=144 Identities=22% Similarity=0.365 Sum_probs=126.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++.+|+++|+|+++ |.+| +.++|++++||++||+||++.|||+|+.+++.|+++++++. +++|++
T Consensus 17 ~~~~G~~~P~f~l~---------~~~g----~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~ 81 (167)
T PRK00522 17 LPQVGDKAPDFTLV---------ANDL----SDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLC 81 (167)
T ss_pred CCCCCCCCCCeEEE---------cCCC----cEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEE
Confidence 46789999999999 8899 99999999999999999977669999999999999999983 899999
Q ss_pred EecCCHHHHHHHHHHcCCCcccc-eeEEEcC-CchHHHHhCCC-CC---CCcceeeEEEEcCCCcEEEEEec-cCCCCCC
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLN-HWQFSDT-NGSLIDQLGIR-HE---TGVALRATFIFDPQNIIQHITVN-NLNVGRN 153 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~-~~~~~D~-~~~~~~~~gv~-~~---~g~~~p~~~liD~~g~i~~~~~~-~~~~~~~ 153 (181)
||.|++..+++|++++ +++ +++++|. ++.+++.||+. .. .|++.|++||||++|+|++.++. ......+
T Consensus 82 vs~D~~~~~~~f~~~~----~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~ 157 (167)
T PRK00522 82 ISADLPFAQKRFCGAE----GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPD 157 (167)
T ss_pred EeCCCHHHHHHHHHhC----CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCC
Confidence 9999999999999987 776 7999994 56999999997 32 57778899999999999999973 4456678
Q ss_pred HHHHHHHHHh
Q psy2878 154 PIETLRILDA 163 (181)
Q Consensus 154 ~~~ll~~l~~ 163 (181)
+++++++|++
T Consensus 158 ~~~~l~~l~~ 167 (167)
T PRK00522 158 YDAALAALKA 167 (167)
T ss_pred HHHHHHHhhC
Confidence 9999998863
No 16
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.97 E-value=1.8e-30 Score=187.48 Aligned_cols=144 Identities=29% Similarity=0.429 Sum_probs=128.3
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|.+|+.+|+|++. +.+| +.+++++++| |++||+||+++||+.|+.+++.|+++++++++.++++++
T Consensus 1 ~~~G~~~p~~~l~---------~~~g----~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~ 67 (149)
T cd03018 1 LEVGDKAPDFELP---------DQNG----QEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLG 67 (149)
T ss_pred CCCCCcCCCcEec---------CCCC----CEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5789999999999 8899 9999999999 999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEEcCC--chHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFSDTN--GSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
||.|+++.+++|++++ +++|++++|.+ .++++.||+. ...+++.|++||||++|+|++.+.+......+..++
T Consensus 68 vs~d~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~ 143 (149)
T cd03018 68 ISVDSPFSLRAWAEEN----GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDY 143 (149)
T ss_pred ecCCCHHHHHHHHHhc----CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhH
Confidence 9999999999999987 89999999987 9999999998 333667789999999999999997655445666666
Q ss_pred HHHHH
Q psy2878 158 LRILD 162 (181)
Q Consensus 158 l~~l~ 162 (181)
.+.|+
T Consensus 144 ~~~~~ 148 (149)
T cd03018 144 DEALD 148 (149)
T ss_pred HHHhh
Confidence 66654
No 17
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.97 E-value=5.9e-30 Score=183.82 Aligned_cols=138 Identities=21% Similarity=0.365 Sum_probs=121.9
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
++|+.+|+|+++ |.+| ++++|++++||++||+||++.|||+|+.+++.|++++++++ |+.+|+||
T Consensus 1 ~~G~~aP~f~l~---------~~~g----~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is 65 (143)
T cd03014 1 KVGDKAPDFTLV---------TSDL----SEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTIS 65 (143)
T ss_pred CCCCCCCCcEEE---------CCCC----cEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEE
Confidence 479999999999 8999 99999999999999999988889999999999999999984 89999999
Q ss_pred cCCHHHHHHHHHHcCCCccc-ceeEEEcCC-chHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEec-cCCCCCCHHHHH
Q psy2878 83 SDNEFVKLAWRRENSNLYKL-NHWQFSDTN-GSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVN-NLNVGRNPIETL 158 (181)
Q Consensus 83 ~d~~~~~~~~~~~~~~~~~~-~~~~~~D~~-~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~-~~~~~~~~~~ll 158 (181)
.|+.+.+++|.+++ +. +|++++|+. .++++.||++ +..+.+.|++||||++|+|++.+++ ......++++++
T Consensus 66 ~d~~~~~~~~~~~~----~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 66 ADLPFAQKRWCGAE----GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred CCCHHHHHHHHHhc----CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 99999999999987 54 799999996 9999999998 5556668999999999999999974 334456777776
Q ss_pred H
Q psy2878 159 R 159 (181)
Q Consensus 159 ~ 159 (181)
+
T Consensus 142 ~ 142 (143)
T cd03014 142 A 142 (143)
T ss_pred h
Confidence 4
No 18
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.97 E-value=1.2e-29 Score=184.56 Aligned_cols=144 Identities=19% Similarity=0.374 Sum_probs=126.4
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+.+|+|+++ |.+| +.+++++++||++||+||++.|||.|+.+++.|+++++++.+.|+++|+|
T Consensus 4 ~~~g~~~p~f~l~---------~~~G----~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~I 70 (154)
T PRK09437 4 LKAGDIAPKFSLP---------DQDG----EQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGI 70 (154)
T ss_pred CCCCCcCCCcEee---------CCCC----CEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 6789999999999 8999 99999999999999999988899999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC--CCc----ceeeEEEEcCCCcEEEEEeccCCCCCCH
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE--TGV----ALRATFIFDPQNIIQHITVNNLNVGRNP 154 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~--~g~----~~p~~~liD~~g~i~~~~~~~~~~~~~~ 154 (181)
|.|+.+.+++|++++ +++|++++|+++.+++.||+. .. .+. ..|++||||++|+|++.+. +..+..+.
T Consensus 71 s~d~~~~~~~~~~~~----~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~-g~~~~~~~ 145 (154)
T PRK09437 71 STDKPEKLSRFAEKE----LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD-KFKTSNHH 145 (154)
T ss_pred cCCCHHHHHHHHHHh----CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc-CCCcchhH
Confidence 999999999999987 889999999999999999987 21 111 2378999999999999995 34445567
Q ss_pred HHHHHHHHh
Q psy2878 155 IETLRILDA 163 (181)
Q Consensus 155 ~~ll~~l~~ 163 (181)
+++++++++
T Consensus 146 ~~~~~~~~~ 154 (154)
T PRK09437 146 DVVLDYLKE 154 (154)
T ss_pred HHHHHHHhC
Confidence 778777653
No 19
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.97 E-value=1.3e-29 Score=177.43 Aligned_cols=123 Identities=25% Similarity=0.493 Sum_probs=115.1
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
+|+++|+|+++ +.+| +.++|++++||++||+||.+.|||.|..+++.|+++++++++.|+++++|+.
T Consensus 1 vG~~~P~f~l~---------~~~g----~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~ 67 (124)
T PF00578_consen 1 VGDKAPDFTLT---------DSDG----KTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIST 67 (124)
T ss_dssp TTSBGGCEEEE---------TTTS----EEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES
T ss_pred CcCCCCCcEeE---------CCCC----CEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccc
Confidence 69999999999 8999 9999999999999999997779999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEE
Q psy2878 84 DNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHI 143 (181)
Q Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~ 143 (181)
|+.+.+++|.+++ +++|++++|++.++++.|++. .......|++||||++|+|+|+
T Consensus 68 d~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 68 DDPEEIKQFLEEY----GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp SSHHHHHHHHHHH----TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred ccccchhhhhhhh----ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 9999999999998 899999999999999999998 3334467899999999999985
No 20
>KOG0854|consensus
Probab=99.97 E-value=2.1e-29 Score=180.70 Aligned_cols=166 Identities=26% Similarity=0.425 Sum_probs=144.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|..|+.+|+|...+..| .+.+-|+.| .|.||+.+++.++|+|.+|+.++.++..||.++|+.+|+
T Consensus 6 l~lgd~~PNfea~Tt~g--------------~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlia 71 (224)
T KOG0854|consen 6 LRLGDTVPNFEADTTVG--------------KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIA 71 (224)
T ss_pred ccccCcCCCcccccccc--------------ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEE
Confidence 56899999999985444 455556555 699999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcC---CCc--ccceeEEEcCCchHHHHhCCCCC-------CCcceeeEEEEcCCCcEEEEEeccC
Q psy2878 81 GSSDNEFVKLAWRRENS---NLY--KLNHWQFSDTNGSLIDQLGIRHE-------TGVALRATFIFDPQNIIQHITVNNL 148 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~---~~~--~~~~~~~~D~~~~~~~~~gv~~~-------~g~~~p~~~liD~~g~i~~~~~~~~ 148 (181)
.|.|+.++++.|++... ... .++||++.|++.+++-.|+|.+. .|...++.||||++.+|+.++.|+.
T Consensus 72 lS~d~vesH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ 151 (224)
T KOG0854|consen 72 LSVDDVESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPS 151 (224)
T ss_pred eehhhHHHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEccc
Confidence 99999999999998642 122 38999999999999999999821 2344789999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 149 NVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 149 ~~~~~~~~ll~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
..+++.+++++.|.+||- +.+||+||+||++|+
T Consensus 152 ttGRN~dEiLRvidsLqlt~~k~VaTP~nWkpg~~vm 188 (224)
T KOG0854|consen 152 TTGRNFDEILRVIDSLQLTDKKGVATPVNWKPGDKVM 188 (224)
T ss_pred ccCcCHHHHHHHHHHHhhhcccccccccccCCCCceE
Confidence 999999999999999983 468999999999874
No 21
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.96 E-value=9.9e-29 Score=176.52 Aligned_cols=135 Identities=24% Similarity=0.398 Sum_probs=120.2
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+++|+|+++ |.+| +.+++++++||++||+||+++|||.|+.+++.|+++++++++.++++|+|+.|+
T Consensus 1 ~~~p~f~l~---------~~~g----~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~ 67 (140)
T cd03017 1 DKAPDFTLP---------DQDG----ETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDS 67 (140)
T ss_pred CCCCCcccc---------CCCC----CEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468999998 8999 999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCC----CCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q psy2878 86 EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE----TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETL 158 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~----~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll 158 (181)
++.+++|++++ +++|++++|++..+++.||+... .+.+.|++||||++|+|++++. +..+.+++++++
T Consensus 68 ~~~~~~~~~~~----~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~-g~~~~~~~~~~~ 139 (140)
T cd03017 68 VESHAKFAEKY----GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWR-KVKPKGHAEEVL 139 (140)
T ss_pred HHHHHHHHHHh----CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEe-cCCccchHHHHh
Confidence 99999999987 88999999999999999998811 2234589999999999999995 445667777765
No 22
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.96 E-value=1.6e-28 Score=178.78 Aligned_cols=129 Identities=21% Similarity=0.352 Sum_probs=115.7
Q ss_pred cCccCCCcEEecccCCCCCCCCC---cccceeeeecCC-CCCCeEEEEEeeCCCCCCChhH-HHHHHHHHHHHHhcCc-E
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEEN---NVSAFKVITESS-FPGKWKIFYFYPKDFTFVCPTE-ISEYNKLVKDFNERNA-I 77 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~---G~~~~~~~~l~~-~~gk~~ll~F~~~~~cp~C~~~-~~~l~~l~~~~~~~~~-~ 77 (181)
+|+.+|+|+++ +.+ | ++++|++ ++||++||+||++.|||.|+.| ++.|++.+++|++.|+ .
T Consensus 1 vG~~aPdF~l~---------~~~~~~g----~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~ 67 (155)
T cd03013 1 VGDKLPNVTLF---------EYVPGPP----NPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDE 67 (155)
T ss_pred CCCcCCCeEee---------eeccCCC----ceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCE
Confidence 59999999999 664 7 8999999 5999999999999999999999 9999999999999999 6
Q ss_pred EEEEecCCHHHHHHHHHHcCCCccc--ceeEEEcCCchHHHHhCCC-CCC--Cc---ceeeEEEEcCCCcEEEEEeccCC
Q psy2878 78 LLGGSSDNEFVKLAWRRENSNLYKL--NHWQFSDTNGSLIDQLGIR-HET--GV---ALRATFIFDPQNIIQHITVNNLN 149 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~-~~~--g~---~~p~~~liD~~g~i~~~~~~~~~ 149 (181)
|++||.|+++.+++|++++ ++ +|++++|++.++++.||++ ... |. +.|++|||| +|+|++.++...+
T Consensus 68 V~~iS~D~~~~~~~~~~~~----~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~ 142 (155)
T cd03013 68 VICVSVNDPFVMKAWGKAL----GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDP 142 (155)
T ss_pred EEEEECCCHHHHHHHHHhh----CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence 9999999999999999997 65 8999999999999999998 332 32 579999999 7999999985544
Q ss_pred C
Q psy2878 150 V 150 (181)
Q Consensus 150 ~ 150 (181)
.
T Consensus 143 ~ 143 (155)
T cd03013 143 G 143 (155)
T ss_pred C
Confidence 3
No 23
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.96 E-value=1.4e-28 Score=177.10 Aligned_cols=132 Identities=20% Similarity=0.377 Sum_probs=113.8
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
++|+++|+|++++. +.+| +++++++++||++||+||.+.|||+|..+++.|+++++++++.++.+++|+
T Consensus 1 k~G~~~P~~~~~~~-------~~~g----~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~ 69 (146)
T PF08534_consen 1 KVGDKAPDFSLKDL-------DLDG----KPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVS 69 (146)
T ss_dssp STTSB--CCEEEEE-------ETTS----EEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCeEEEee-------cCCC----CEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEec
Confidence 58999999999611 4899 999999999999999999555999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC--C--CCCcceeeEEEEcCCCcEEEEEeccCC
Q psy2878 83 SDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR--H--ETGVALRATFIFDPQNIIQHITVNNLN 149 (181)
Q Consensus 83 ~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~--~--~~g~~~p~~~liD~~g~i~~~~~~~~~ 149 (181)
.++.....+|++++ +.+|+++.|++..++++|++. . ..+...|++||||++|+|++++.+...
T Consensus 70 ~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 70 SDDDPPVREFLKKY----GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ESSSHHHHHHHHHT----TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccCCHHHHHHHHhh----CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 98877799999987 999999999999999999975 1 123367899999999999999974433
No 24
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.95 E-value=1.8e-27 Score=175.93 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=126.0
Q ss_pred CccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 5 GQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 5 G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
|+.+|+|++. +.+| ++++++++ +||++||+|| ++|||.|..+++.|++++++|++.++.+++|+.
T Consensus 1 g~~~p~f~l~---------~~~g----~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~ 66 (171)
T cd02969 1 GSPAPDFSLP---------DTDG----KTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINS 66 (171)
T ss_pred CCcCCCcccc---------CCCC----CEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEec
Confidence 6789999999 8999 99999998 8899999998 889999999999999999999988999999998
Q ss_pred CC--------HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC-----
Q psy2878 84 DN--------EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV----- 150 (181)
Q Consensus 84 d~--------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~----- 150 (181)
|+ .+..++|++++ +++|+++.|++..+++.||+. ..|++||||++|+|++....+...
T Consensus 67 d~~~~~~~d~~~~~~~~~~~~----~~~~~~l~D~~~~~~~~~~v~-----~~P~~~lid~~G~v~~~~~~~~~~~~~~~ 137 (171)
T cd02969 67 NDIEAYPEDSPENMKAKAKEH----GYPFPYLLDETQEVAKAYGAA-----CTPDFFLFDPDGKLVYRGRIDDSRPGNDP 137 (171)
T ss_pred CccccccccCHHHHHHHHHHC----CCCceEEECCchHHHHHcCCC-----cCCcEEEECCCCeEEEeecccCCcccccc
Confidence 65 56778888877 889999999999999999987 568999999999999887433221
Q ss_pred CCCHHHHHHHHHhhccC----------CccccCC
Q psy2878 151 GRNPIETLRILDAIQTG----------KLCACNR 174 (181)
Q Consensus 151 ~~~~~~ll~~l~~l~~~----------~~~~~~~ 174 (181)
....+++.++|+++.++ -+|++.|
T Consensus 138 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 171 (171)
T cd02969 138 PVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW 171 (171)
T ss_pred cccHHHHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence 23567888888887754 3788877
No 25
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.95 E-value=6.5e-27 Score=167.02 Aligned_cols=127 Identities=35% Similarity=0.650 Sum_probs=113.5
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
.+|+|++. |.+| +++++++++||++||+||++.||+.|..+++.|++++++|++.++++|+|+.|++
T Consensus 1 ~~p~f~l~---------~~~g----~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~ 67 (140)
T cd02971 1 KAPDFTLP---------ATDG----GEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP 67 (140)
T ss_pred CCCCceec---------cCCC----cEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 47899998 8999 9999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCC---CcceeeEEEEcCCCcEEEEEeccCC
Q psy2878 87 FVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HET---GVALRATFIFDPQNIIQHITVNNLN 149 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~---g~~~p~~~liD~~g~i~~~~~~~~~ 149 (181)
+.+++|++++ .+.+|++++|++..+++.||+. ... +...|++||||++|+|++++.+...
T Consensus 68 ~~~~~~~~~~---~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 68 FSHKAWAEKE---GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HHHHHHHhcc---cCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 9999998875 3778999999999999999998 221 3457899999999999999975444
No 26
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.94 E-value=4.1e-26 Score=164.27 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=109.3
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCC-CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFP-GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~-gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.+|+|+++ |.+| ++++++++. +|++||+||+++|||.|+.+++.|+++++++.+.|+.+|+|+.|+
T Consensus 1 ~~p~f~l~---------~~~g----~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 1 TAPDFELP---------DAGG----ETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCCCcccc---------CCCC----CEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 47899998 8999 999999985 578999999899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC-----------------------CCcceeeEEEEcCCCcEE
Q psy2878 86 EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE-----------------------TGVALRATFIFDPQNIIQ 141 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~-----------------------~g~~~p~~~liD~~g~i~ 141 (181)
.+.+.+|.+++ +++|++++|++..+++.||+. .. .+...|++||||++|+|+
T Consensus 68 ~~~~~~~~~~~----~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~ 143 (149)
T cd02970 68 PEKLEAFDKGK----FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTIL 143 (149)
T ss_pred HHHHHHHHHhc----CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEE
Confidence 88888888877 899999999999999999995 11 124689999999999999
Q ss_pred EEEe
Q psy2878 142 HITV 145 (181)
Q Consensus 142 ~~~~ 145 (181)
+.+.
T Consensus 144 ~~~~ 147 (149)
T cd02970 144 FAHV 147 (149)
T ss_pred EEec
Confidence 9985
No 27
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.93 E-value=2.8e-25 Score=167.86 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=109.5
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
..|..+|+|+++ |.+| +.++|++++||++||+|| ++|||+|+.++|.|++++++++++|++||+|+
T Consensus 14 ~~~~~~pdf~l~---------d~~G----~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 14 ELRKSIYDYTVK---------TLEG----TTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred hcCCCCCceEEE---------CCCC----CEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEec
Confidence 467889999999 8999 999999999999888887 89999999999999999999999999999999
Q ss_pred c--------CCHHHHHHHHHHcCCCcccceeEEEcC------CchHHHH--------hCCC-CCCCcc-eeeEEEEcCCC
Q psy2878 83 S--------DNEFVKLAWRRENSNLYKLNHWQFSDT------NGSLIDQ--------LGIR-HETGVA-LRATFIFDPQN 138 (181)
Q Consensus 83 ~--------d~~~~~~~~~~~~~~~~~~~~~~~~D~------~~~~~~~--------~gv~-~~~g~~-~p~~~liD~~g 138 (181)
. ++.+.+++|++++ +++||+++|. ...+.+. |+.. ...+++ .+++||||++|
T Consensus 80 ~~~~~~~e~d~~e~~~~f~~~~----~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G 155 (199)
T PTZ00056 80 TSQFLNQEFPNTKDIRKFNDKN----KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSG 155 (199)
T ss_pred chhccCCCCCCHHHHHHHHHHc----CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCC
Confidence 6 5678899999987 8999999862 2233322 2221 111222 24799999999
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 139 IIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 139 ~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+|++++.+. ...+++.+.|+++.
T Consensus 156 ~iv~~~~g~----~~~~~l~~~I~~ll 178 (199)
T PTZ00056 156 NVVAYFSPR----TEPLELEKKIAELL 178 (199)
T ss_pred cEEEEeCCC----CCHHHHHHHHHHHH
Confidence 999988432 23345566665554
No 28
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.93 E-value=3.4e-25 Score=165.52 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=103.8
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
.++.+|+|+++ |.+| ++++|++++||++||+|++++|||+|+.++|.|++++++|+++|+.||+||.
T Consensus 16 ~~~~~p~f~l~---------d~~G----~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 16 PTKSFFEFEAI---------DIDG----QLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCCcccceEeE---------cCCC----CEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 46788999999 8999 9999999999976554445999999999999999999999999999999996
Q ss_pred C--------CHHHHHHHHH-HcCCCcccceeEEEc--CCchH-HHHhCCC------------CCCCcc-eeeEEEEcCCC
Q psy2878 84 D--------NEFVKLAWRR-ENSNLYKLNHWQFSD--TNGSL-IDQLGIR------------HETGVA-LRATFIFDPQN 138 (181)
Q Consensus 84 d--------~~~~~~~~~~-~~~~~~~~~~~~~~D--~~~~~-~~~~gv~------------~~~g~~-~p~~~liD~~g 138 (181)
| +.+...+|.. ++ +++||+++| .++.. ++.|++. ...+++ ++++||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~f~~~~~----~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G 158 (183)
T PTZ00256 83 NQFMEQEPWDEPEIKEYVQKKF----NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQG 158 (183)
T ss_pred ccccccCCCCHHHHHHHHHHhc----CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCC
Confidence 4 2466777765 55 899999965 45433 3444221 011333 33689999999
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 139 IIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 139 ~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+|++++.+.. +.+++.+.|+++
T Consensus 159 ~Iv~~~~g~~----~~~~l~~~I~~l 180 (183)
T PTZ00256 159 KVVKYFSPKV----NPNEMIQDIEKL 180 (183)
T ss_pred CEEEEECCCC----CHHHHHHHHHHH
Confidence 9999996432 333445555443
No 29
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.93 E-value=7.9e-25 Score=168.47 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=111.7
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
.+|+.+|+|+++ |.+| +.++|++++||++||+|| ++||+.|..+++.|++++++++++|++||+|+
T Consensus 74 ~~g~~aPdF~l~---------d~~G----~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 74 ATEKSVHDFTVK---------DIDG----KDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred hcCCCCCceEEE---------CCCC----CEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 378999999999 9999 999999999999999999 99999999999999999999999999999999
Q ss_pred cC--------CHHHHHHHH-HHcCCCcccceeEEEc--CCc-hHHHHhCCC-C-CCC------cceeeEEEEcCCCcEEE
Q psy2878 83 SD--------NEFVKLAWR-RENSNLYKLNHWQFSD--TNG-SLIDQLGIR-H-ETG------VALRATFIFDPQNIIQH 142 (181)
Q Consensus 83 ~d--------~~~~~~~~~-~~~~~~~~~~~~~~~D--~~~-~~~~~~gv~-~-~~g------~~~p~~~liD~~g~i~~ 142 (181)
.| +.+++++|+ +++ +++||++.| .++ .++..|++. . ..+ ...|++||||++|+|++
T Consensus 140 ~d~~~~~e~~s~~ei~~f~~~~~----g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~ 215 (236)
T PLN02399 140 CNQFGGQEPGSNPEIKQFACTRF----KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE 215 (236)
T ss_pred cccccccCCCCHHHHHHHHHHhc----CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE
Confidence 63 456788887 465 899999864 444 455566532 0 001 12589999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHhhc
Q psy2878 143 ITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 143 ~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++.+.. +.+++.+.|+++.
T Consensus 216 ~~~G~~----~~~~le~~I~~lL 234 (236)
T PLN02399 216 RYPPTT----SPFQIEKDIQKLL 234 (236)
T ss_pred EECCCC----CHHHHHHHHHHHh
Confidence 995332 3456666666553
No 30
>PLN02412 probable glutathione peroxidase
Probab=99.93 E-value=5.1e-25 Score=162.31 Aligned_cols=138 Identities=11% Similarity=0.091 Sum_probs=107.7
Q ss_pred CccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 5 GQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 5 G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
-..+|+|+++ |.+| +.++|++++||++||+|| ++||+.|+.+++.|++++++|++.|+.|++|+.|
T Consensus 6 ~~~~pdf~l~---------d~~G----~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 6 PKSIYDFTVK---------DIGG----NDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCCCceEEE---------CCCC----CEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 3678999999 8999 999999999999999999 8999999999999999999999999999999974
Q ss_pred --------CHHHH-HHHHHHcCCCcccceeEEEc--CC-chHHHHhCCC-CC------CCc-ceeeEEEEcCCCcEEEEE
Q psy2878 85 --------NEFVK-LAWRRENSNLYKLNHWQFSD--TN-GSLIDQLGIR-HE------TGV-ALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 85 --------~~~~~-~~~~~~~~~~~~~~~~~~~D--~~-~~~~~~~gv~-~~------~g~-~~p~~~liD~~g~i~~~~ 144 (181)
+.+.. +.|++++ +++||++.| ++ ...++.|++. .. .++ ..|++||||++|+|++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~----~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 72 QFLGQEPGSNEEIQQTVCTRF----KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred ccccCCCCCHHHHHHHHHHcc----CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 33344 4445665 899999974 55 3777777643 11 012 258999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHhh
Q psy2878 145 VNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 145 ~~~~~~~~~~~~ll~~l~~l 164 (181)
.+.. +.+++.+.|+++
T Consensus 148 ~g~~----~~~~l~~~i~~~ 163 (167)
T PLN02412 148 APTT----SPLKIEKDIQNL 163 (167)
T ss_pred CCCC----CHHHHHHHHHHH
Confidence 6332 334555555544
No 31
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.93 E-value=3.7e-25 Score=160.66 Aligned_cols=120 Identities=12% Similarity=0.127 Sum_probs=98.6
Q ss_pred CCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC---
Q psy2878 8 LSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD--- 84 (181)
Q Consensus 8 ~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d--- 84 (181)
+|+|++. |.+| ++++|++++||++||+|| ++||| |+.+++.|++++++|+++|+.+++|+.+
T Consensus 2 ~~~f~l~---------d~~G----~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~ 66 (152)
T cd00340 2 IYDFSVK---------DIDG----EPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFG 66 (152)
T ss_pred cceeEEE---------CCCC----CEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccc
Confidence 6889998 9999 999999999999999998 99999 9999999999999999999999999864
Q ss_pred -----CHHHHHHHHHH-cCCCcccceeEEEcC--Cch-HHHHhCCC--CCCC------cceeeEEEEcCCCcEEEEEec
Q psy2878 85 -----NEFVKLAWRRE-NSNLYKLNHWQFSDT--NGS-LIDQLGIR--HETG------VALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 85 -----~~~~~~~~~~~-~~~~~~~~~~~~~D~--~~~-~~~~~gv~--~~~g------~~~p~~~liD~~g~i~~~~~~ 146 (181)
+.+.+++|+++ + +++||++.|. ++. .++.|++. ...+ ...|++||||++|+|++++.+
T Consensus 67 ~~~~~~~~~~~~f~~~~~----~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G 141 (152)
T cd00340 67 GQEPGSNEEIKEFCETNY----GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP 141 (152)
T ss_pred cCCCCCHHHHHHHHHHhc----CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence 36788999986 6 8899999874 333 45566532 0000 124489999999999999964
No 32
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.92 E-value=1.3e-24 Score=163.12 Aligned_cols=134 Identities=9% Similarity=0.102 Sum_probs=111.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecC--CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITES--SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~--~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
+.+|+.+|+|+++ |.+| +.++++ +++||+++|+|| ++|||+|+.++|.+++++++ .+++++
T Consensus 46 ~~vG~~aP~f~l~---------d~~G----~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv 108 (189)
T TIGR02661 46 PDVGDAAPIFNLP---------DFDG----EPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVV 108 (189)
T ss_pred CCCCCcCCCcEec---------CCCC----CEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEE
Confidence 4789999999999 8999 999995 579999999998 99999999999999998754 478899
Q ss_pred EEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 80 GGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
+||.++++++++|++++ +++++.+. .+.++++.|++. ..|++||||++|+|+++. ..+..++++++++
T Consensus 109 ~Is~~~~~~~~~~~~~~----~~~~~~~~-~~~~i~~~y~v~-----~~P~~~lID~~G~I~~~g--~~~~~~~le~ll~ 176 (189)
T TIGR02661 109 MISDGTPAEHRRFLKDH----ELGGERYV-VSAEIGMAFQVG-----KIPYGVLLDQDGKIRAKG--LTNTREHLESLLE 176 (189)
T ss_pred EEeCCCHHHHHHHHHhc----CCCcceee-chhHHHHhccCC-----ccceEEEECCCCeEEEcc--CCCCHHHHHHHHH
Confidence 99999999999999987 77776544 468999999986 568999999999999875 3344456677776
Q ss_pred HHHhh
Q psy2878 160 ILDAI 164 (181)
Q Consensus 160 ~l~~l 164 (181)
++++.
T Consensus 177 ~l~~~ 181 (189)
T TIGR02661 177 ADREG 181 (189)
T ss_pred HHHcC
Confidence 66543
No 33
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.92 E-value=7e-25 Score=154.39 Aligned_cols=105 Identities=13% Similarity=0.208 Sum_probs=96.4
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec------CCHHHHHHHHHHcCCCccccee
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS------DNEFVKLAWRRENSNLYKLNHW 105 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~------d~~~~~~~~~~~~~~~~~~~~~ 105 (181)
+++++++++||++||+|| ++||+.|+.+++.|+++++++++.++.+|+|+. ++.+.+++|++++ +++|+
T Consensus 14 ~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~----~~~~p 88 (126)
T cd03012 14 KPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY----GITYP 88 (126)
T ss_pred CccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc----CCCCC
Confidence 689999999999999998 889999999999999999999999999999986 4577888899987 99999
Q ss_pred EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 106 QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 106 ~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
++.|++..+++.|++. ..|++||||++|+|++++.+
T Consensus 89 ~~~D~~~~~~~~~~v~-----~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 89 VANDNDYATWRAYGNQ-----YWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred EEECCchHHHHHhCCC-----cCCeEEEECCCCcEEEEEec
Confidence 9999999999999986 56899999999999999964
No 34
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.92 E-value=1.4e-24 Score=157.85 Aligned_cols=128 Identities=9% Similarity=0.067 Sum_probs=99.7
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--------CCHHHHHHHHHH
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--------DNEFVKLAWRRE 95 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--------d~~~~~~~~~~~ 95 (181)
|.+| ++++|++++||++||+|| ++|||+|..+++.|++++++|++.|+.+++|+. |+.+.+++|+++
T Consensus 9 ~~~G----~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~ 83 (153)
T TIGR02540 9 DARG----RTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARR 83 (153)
T ss_pred CCCC----CEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHH
Confidence 9999 999999999999888887 999999999999999999999999999999994 667889999975
Q ss_pred -cCCCcccceeEEEcC---CchHHH--HhCCCCCCCcc--eeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 96 -NSNLYKLNHWQFSDT---NGSLID--QLGIRHETGVA--LRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 96 -~~~~~~~~~~~~~D~---~~~~~~--~~gv~~~~g~~--~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+ +++||+++|. +..... .|.+....+.| .+++||||++|+|++.+.+. ...+++.+.|+++
T Consensus 84 ~~----~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~----~~~~~l~~~i~~l 152 (153)
T TIGR02540 84 NY----GVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPE----EPVEEIRPEITAL 152 (153)
T ss_pred hc----CCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCC----CCHHHHHHHHHHh
Confidence 6 8999999872 233333 33322111222 23499999999999999543 2446677766654
No 35
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.92 E-value=4.3e-24 Score=157.70 Aligned_cols=136 Identities=18% Similarity=0.301 Sum_probs=118.0
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|..+|+|++. +.+| +.+++++++||+++|+|| ++||+.|+.+++.|+++++++.+.++++++|
T Consensus 35 ~~~g~~~p~~~~~---------~~~g----~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i 100 (173)
T PRK03147 35 VQVGKEAPNFVLT---------DLEG----KKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAV 100 (173)
T ss_pred cCCCCCCCCcEee---------cCCC----CEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 5689999999999 8999 999999999999999998 8899999999999999999999989999999
Q ss_pred ecCC-HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 82 SSDN-EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 82 s~d~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
+.|. .+..++|.+++ +++|+++.|.+.++.+.||+. ..|++|+||++|+|++.+.+. . ..+++.+.
T Consensus 101 ~~d~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~g~i~~~~~g~-~---~~~~l~~~ 167 (173)
T PRK03147 101 NVDETELAVKNFVNRY----GLTFPVAIDKGRQVIDAYGVG-----PLPTTFLIDKDGKVVKVITGE-M---TEEQLEEY 167 (173)
T ss_pred EcCCCHHHHHHHHHHh----CCCceEEECCcchHHHHcCCC-----CcCeEEEECCCCcEEEEEeCC-C---CHHHHHHH
Confidence 9875 56778888887 899999999999999999987 678999999999999888432 2 34555555
Q ss_pred HHhh
Q psy2878 161 LDAI 164 (181)
Q Consensus 161 l~~l 164 (181)
++++
T Consensus 168 l~~~ 171 (173)
T PRK03147 168 LEKI 171 (173)
T ss_pred HHHh
Confidence 5544
No 36
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.92 E-value=2.5e-24 Score=161.09 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=100.2
Q ss_pred ccCccCCCcEEecccCCCCCCCCC--cccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEEN--NVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~--G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
.+|+++|+|+++ |.+ | +.++++++ +||++||+|| ++||++|+.++|.|.++. +++++|+
T Consensus 40 ~~g~~~p~f~l~---------~~~g~g----~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~----~~~~~vi 101 (185)
T PRK15412 40 LIGKPVPKFRLE---------SLENPG----QFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLS----AQGIRVV 101 (185)
T ss_pred hcCCCCCCcCCc---------cCCCCC----ccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHH----HcCCEEE
Confidence 468899999998 655 5 66777665 7999999999 899999999999998764 3589999
Q ss_pred EEecC-CHHHHHHHHHHcCCCcccceeE-EEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEecc
Q psy2878 80 GGSSD-NEFVKLAWRRENSNLYKLNHWQ-FSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 80 ~Is~d-~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~ 147 (181)
+|+.+ +.+.+++|++++ +.+|++ +.|+++.+++.||+. ..|++||||++|+|++++.+.
T Consensus 102 ~v~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~gv~-----~~P~t~vid~~G~i~~~~~G~ 162 (185)
T PRK15412 102 GMNYKDDRQKAISWLKEL----GNPYALSLFDGDGMLGLDLGVY-----GAPETFLIDGNGIIRYRHAGD 162 (185)
T ss_pred EEECCCCHHHHHHHHHHc----CCCCceEEEcCCccHHHhcCCC-----cCCeEEEECCCceEEEEEecC
Confidence 99974 567788899987 888884 789999999999987 568999999999999999643
No 37
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.90 E-value=1.6e-23 Score=155.19 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=104.0
Q ss_pred ccCccCCCcEEecccCCCCCCCCCccccee--eeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFK--VITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~--~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
.+|+++|+|+++ |.+| + +++++++ +||+++|+|| ++|||+|+.+++.+++++ +.+++++
T Consensus 35 ~vG~~ap~f~l~---------~~~G----~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~----~~~~~vi 96 (173)
T TIGR00385 35 LIGKPVPAFPLA---------ALRE----PLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELA----KDGLPIV 96 (173)
T ss_pred hcCCCCCCcccc---------ccCC----CCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHH----HcCCEEE
Confidence 478999999999 7787 6 4555665 6899999999 899999999999987765 3579999
Q ss_pred EEecC-CHHHHHHHHHHcCCCccccee-EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 80 GGSSD-NEFVKLAWRRENSNLYKLNHW-QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 80 ~Is~d-~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
+|+.+ ..+...+|++++ +++|+ ++.|+++++++.|++. ..|++|+||++|+|++++.+. .+.+++
T Consensus 97 ~V~~~~~~~~~~~~~~~~----~~~f~~v~~D~~~~~~~~~~v~-----~~P~~~~id~~G~i~~~~~G~----~~~~~l 163 (173)
T TIGR00385 97 GVDYKDQSQNALKFLKEL----GNPYQAILIDPNGKLGLDLGVY-----GAPETFLVDGNGVILYRHAGP----LNNEVW 163 (173)
T ss_pred EEECCCChHHHHHHHHHc----CCCCceEEECCCCchHHhcCCe-----eCCeEEEEcCCceEEEEEecc----CCHHHH
Confidence 99975 456667888887 88897 5689999999999987 568999999999999999643 233444
Q ss_pred HHHHHh
Q psy2878 158 LRILDA 163 (181)
Q Consensus 158 l~~l~~ 163 (181)
.+.+++
T Consensus 164 ~~~l~~ 169 (173)
T TIGR00385 164 TEGFLP 169 (173)
T ss_pred HHHHHH
Confidence 544444
No 38
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.90 E-value=4.9e-23 Score=147.32 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=103.7
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCC-ChhHHHHHHHHHHHHHhcC---cEEEEEe
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFV-CPTEISEYNKLVKDFNERN---AILLGGS 82 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~-C~~~~~~l~~l~~~~~~~~---~~vi~Is 82 (181)
.+|+|++. |.+| +++++++++||++||+|| ++||+. |..+++.|+++++++.+++ +++++||
T Consensus 1 ~~p~f~l~---------~~~g----~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs 66 (142)
T cd02968 1 IGPDFTLT---------DQDG----RPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFIS 66 (142)
T ss_pred CCCceEEE---------cCCC----CEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEE
Confidence 37899999 8999 999999999999999998 789996 9999999999999999875 9999999
Q ss_pred cCC----HHHHHHHHHHcCCCcccceeEEEcCC---chHHHHhCCC-CCC-------Cc-ceeeEEEEcCCCcEEEEE
Q psy2878 83 SDN----EFVKLAWRRENSNLYKLNHWQFSDTN---GSLIDQLGIR-HET-------GV-ALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 83 ~d~----~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~-~~~-------g~-~~p~~~liD~~g~i~~~~ 144 (181)
.|+ ++.+++|++++ +.+|+++.|++ ..+++.||+. ... ++ +.|.+||||++|+|++++
T Consensus 67 ~d~~~d~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 67 VDPERDTPEVLKAYAKAF----GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred ECCCCCCHHHHHHHHHHh----CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 854 57788899887 78999999975 7999999987 211 11 357899999999999987
No 39
>KOG0855|consensus
Probab=99.90 E-value=7.5e-23 Score=145.86 Aligned_cols=145 Identities=23% Similarity=0.391 Sum_probs=128.7
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
+.+|+.+|||+|+ |.|| ..++|.++.|+ ++|++||++..+|.|+.+...++..|++|++.+.+|+|
T Consensus 63 v~~Gd~iPD~tL~---------dedg----~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~G 129 (211)
T KOG0855|consen 63 VNKGDAIPDFTLK---------DEDG----KSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIG 129 (211)
T ss_pred eecCCcCCCcccc---------cCCC----CeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEe
Confidence 4689999999999 9999 99999999885 99999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-C-CCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-H-ETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETL 158 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~-~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll 158 (181)
+|.|+...+++|..++ ++++.+++|+.+++.+.+|+. + ..|.+.+..||+|+.|...........+.-++++.+
T Consensus 130 lS~D~s~sqKaF~sKq----nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~ 205 (211)
T KOG0855|consen 130 LSGDDSASQKAFASKQ----NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEAL 205 (211)
T ss_pred eccCchHHHHHhhhhc----cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHH
Confidence 9999999999999998 999999999999999999998 3 345678899999988766655544667777788877
Q ss_pred HHHHh
Q psy2878 159 RILDA 163 (181)
Q Consensus 159 ~~l~~ 163 (181)
+.|.+
T Consensus 206 k~~~~ 210 (211)
T KOG0855|consen 206 KFLKA 210 (211)
T ss_pred HHHhc
Confidence 76653
No 40
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.89 E-value=1.8e-22 Score=139.32 Aligned_cols=110 Identities=9% Similarity=0.128 Sum_probs=95.7
Q ss_pred CCcEEecccCCCCCCCCCcccceeeeecCCCC-CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHH
Q psy2878 9 SSYRVIGVKPGFNLPEENNVSAFKVITESSFP-GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEF 87 (181)
Q Consensus 9 P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~-gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~ 87 (181)
|+|.+. +.+| +.++|++++ ||++||+|| ++||+.|+.+++.++++++++.. ++.+++|+.++.+
T Consensus 1 p~f~l~---------~~~G----~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~ 65 (114)
T cd02967 1 PTFDLT---------TIDG----APVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKA 65 (114)
T ss_pred CCceee---------cCCC----CEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHH
Confidence 677777 8999 999999997 999999998 88999999999999999888754 6889999877888
Q ss_pred HHHHHHHHcCCCccc-ceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 88 VKLAWRRENSNLYKL-NHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
..++|++++ ++ .+|.+.+ ..+++.|++. ..|++||||++|+|+++.
T Consensus 66 ~~~~~~~~~----~~~~~p~~~~--~~~~~~~~~~-----~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 66 EHQRFLKKH----GLEAFPYVLS--AELGMAYQVS-----KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHHHHHh----CCCCCcEEec--HHHHhhcCCC-----CcCeEEEECCCCeEEecc
Confidence 889999987 76 4887764 5688999986 578999999999999875
No 41
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.89 E-value=1.9e-22 Score=141.93 Aligned_cols=117 Identities=20% Similarity=0.230 Sum_probs=99.2
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec-C
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS-D 84 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~-d 84 (181)
+.+|+|+++ |.+| ..+++++++++||++||+|| ++|||.|+.+++.|+++.+++ +++|++|+. +
T Consensus 1 ~~~p~f~~~---------~~~g--~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~ 65 (127)
T cd03010 1 KPAPAFSLP---------ALPG--PDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKD 65 (127)
T ss_pred CCCCCcccc---------cccC--CCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCC
Confidence 368999998 5554 11568889999999999999 899999999999999987664 599999996 5
Q ss_pred CHHHHHHHHHHcCCCccccee-EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 85 NEFVKLAWRRENSNLYKLNHW-QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
+.+.+++|++++ +++|+ ++.|+++++++.|++. ..|++|+||++|+|++++.+
T Consensus 66 ~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~v~-----~~P~~~~ld~~G~v~~~~~G 119 (127)
T cd03010 66 NPENALAWLARH----GNPYAAVGFDPDGRVGIDLGVY-----GVPETFLIDGDGIIRYKHVG 119 (127)
T ss_pred CHHHHHHHHHhc----CCCCceEEECCcchHHHhcCCC-----CCCeEEEECCCceEEEEEec
Confidence 678888998887 77775 6689999999999987 57899999999999999864
No 42
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.87 E-value=9.4e-22 Score=145.82 Aligned_cols=144 Identities=10% Similarity=0.067 Sum_probs=110.0
Q ss_pred CccCccCCCcEEecc-----cCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCc
Q psy2878 2 KTIGQSLSSYRVIGV-----KPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76 (181)
Q Consensus 2 l~~G~~~P~f~l~~~-----~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~ 76 (181)
+.+|+++|...+... .++ +.+. ++++.++++||+.||+|| ++||++|+.++|.|.++ +++|+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~----~~~y----~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~ 89 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGK----DTVY----QPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKF 89 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCC----cccc----eeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCC
Confidence 568999999888743 233 4555 889999999999999998 88999999999999888 66789
Q ss_pred EE------EEEecCC-HHHHHHHHHHcCCCccccee---EEEcCCchHHHHhCCCCCCCcceeeE-EEEcCCCcEEEEEe
Q psy2878 77 IL------LGGSSDN-EFVKLAWRRENSNLYKLNHW---QFSDTNGSLIDQLGIRHETGVALRAT-FIFDPQNIIQHITV 145 (181)
Q Consensus 77 ~v------i~Is~d~-~~~~~~~~~~~~~~~~~~~~---~~~D~~~~~~~~~gv~~~~g~~~p~~-~liD~~g~i~~~~~ 145 (181)
.+ ++|+.|+ ......|.+.+....+..|| ++.|+++.++..||+. ..|++ ||||++|+|++++.
T Consensus 90 ~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~-----~~P~T~fVIDk~GkVv~~~~ 164 (184)
T TIGR01626 90 PPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLN-----SEDSAIIVLDKTGKVKFVKE 164 (184)
T ss_pred CcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCC-----CCCceEEEECCCCcEEEEEe
Confidence 99 9999885 33444444432222366666 9999999999999987 55566 99999999999996
Q ss_pred ccCCCCCCHHHHHHHHHhh
Q psy2878 146 NNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 146 ~~~~~~~~~~~ll~~l~~l 164 (181)
+.. .....++++..|+++
T Consensus 165 G~l-~~ee~e~~~~li~~l 182 (184)
T TIGR01626 165 GAL-SDSDIQTVISLVNGL 182 (184)
T ss_pred CCC-CHHHHHHHHHHHHHH
Confidence 432 233556677777765
No 43
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.87 E-value=5.6e-22 Score=142.27 Aligned_cols=103 Identities=10% Similarity=0.122 Sum_probs=86.2
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-------CcEEEEEecCC-HHHHHHHHHHcCCCcccc
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-------NAILLGGSSDN-EFVKLAWRRENSNLYKLN 103 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-------~~~vi~Is~d~-~~~~~~~~~~~~~~~~~~ 103 (181)
..++|++++||+++|+|| ++|||+|+.++|.|.++|+++.++ ++.+|+||.|. .+..++|.++. +++
T Consensus 16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~----~~~ 90 (146)
T cd03008 16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM----PKK 90 (146)
T ss_pred ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC----CCC
Confidence 568899999999999999 999999999999999999988764 69999999985 44577888887 766
Q ss_pred eeE---EEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 104 HWQ---FSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 104 ~~~---~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
|+. ..+.+..+++.|++. ..|++||||++|+|+...
T Consensus 91 ~~~~p~~~~~~~~l~~~y~v~-----~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 91 WLFLPFEDEFRRELEAQFSVE-----ELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred ceeecccchHHHHHHHHcCCC-----CCCEEEEECCCCcEEeeC
Confidence 533 333346899999987 567999999999999765
No 44
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.86 E-value=4.1e-21 Score=131.13 Aligned_cols=111 Identities=23% Similarity=0.439 Sum_probs=101.7
Q ss_pred CCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC--HHHHHHHHHHcC
Q psy2878 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN--EFVKLAWRRENS 97 (181)
Q Consensus 20 ~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~--~~~~~~~~~~~~ 97 (181)
|.+.+.+| +.+++++++||+++|+|| ++||+.|...++.|.++.+++++.++.+++|+.|+ .+..++|.+++
T Consensus 2 ~~~~~~~g----~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~- 75 (116)
T cd02966 2 FSLPDLDG----KPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY- 75 (116)
T ss_pred ccccCCCC----CEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc-
Confidence 34458999 999999999999999998 78999999999999999999987789999999998 89999999987
Q ss_pred CCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 98 NLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 98 ~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
+.+|+++.|.+..+.+.|++. ..|+++|+|++|+|++.+
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~-----~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 76 ---GITFPVLLDPDGELAKAYGVR-----GLPTTFLIDRDGRIRARH 114 (116)
T ss_pred ---CCCcceEEcCcchHHHhcCcC-----ccceEEEECCCCcEEEEe
Confidence 799999999999999999986 678999999999999887
No 45
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.86 E-value=8.8e-21 Score=159.94 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=102.6
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
.+++.+|+|++. |.+| ++++++ +||++||+|| ++||++|+.++|.|++++++++..+++||+|+
T Consensus 33 ~~~~~lP~f~l~---------D~dG----~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs 96 (521)
T PRK14018 33 TVPHTLSTLKTA---------DNRP----ASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVA 96 (521)
T ss_pred cccCCCCCeEee---------cCCC----ceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 456789999999 9999 999987 7999999999 99999999999999999999988889999998
Q ss_pred cC------CHHHHHHHHHHcCCCccc-ceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEecc
Q psy2878 83 SD------NEFVKLAWRRENSNLYKL-NHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 83 ~d------~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~ 147 (181)
.+ ..+..++|.+.. ++ .++++.|.+.++++.|++. ..|++||||++|+|++.+.+.
T Consensus 97 ~~~~~~e~~~~~~~~~~~~~----~y~~~pV~~D~~~~lak~fgV~-----giPTt~IIDkdGkIV~~~~G~ 159 (521)
T PRK14018 97 SPGFLHEKKDGDFQKWYAGL----DYPKLPVLTDNGGTLAQSLNIS-----VYPSWAIIGKDGDVQRIVKGS 159 (521)
T ss_pred cccccccccHHHHHHHHHhC----CCcccceeccccHHHHHHcCCC-----CcCeEEEEcCCCeEEEEEeCC
Confidence 63 234455555544 43 6899999999999999987 678999999999999999643
No 46
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.85 E-value=2.3e-20 Score=130.43 Aligned_cols=108 Identities=18% Similarity=0.275 Sum_probs=96.2
Q ss_pred CCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC--H
Q psy2878 9 SSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN--E 86 (181)
Q Consensus 9 P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~--~ 86 (181)
|+|++. |.+| +.+++++++||+++|+|| ++||+.|+.+++.|++++++ +.+++|+.++ .
T Consensus 1 p~f~l~---------~~~g----~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~ 61 (123)
T cd03011 1 PLFTAT---------TLDG----EQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDD 61 (123)
T ss_pred CCceee---------cCCC----CEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCH
Confidence 678887 9999 999999999999999998 88999999999999999866 6778888754 6
Q ss_pred HHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 87 FVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+.+++|++++ +++|+++.|++.++.+.|++. ..|+.+|||++| |++.+.
T Consensus 62 ~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~i~-----~~P~~~vid~~g-i~~~~~ 110 (123)
T cd03011 62 GAVARFMQKK----GYGFPVINDPDGVISARWGVS-----VTPAIVIVDPGG-IVFVTT 110 (123)
T ss_pred HHHHHHHHHc----CCCccEEECCCcHHHHhCCCC-----cccEEEEEcCCC-eEEEEe
Confidence 8888999987 889999999999999999987 678999999999 988885
No 47
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.84 E-value=4.5e-20 Score=137.38 Aligned_cols=138 Identities=12% Similarity=0.131 Sum_probs=102.4
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS-- 83 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~-- 83 (181)
..+++|++. |.+| ++++|++++||++||+|| ++||+.|. +++.|++++++|+++|+.|+||+.
T Consensus 3 ~~~~~f~~~---------~~~G----~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nq 67 (183)
T PRK10606 3 DSILTTVVT---------TIDG----EVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQ 67 (183)
T ss_pred CCccCcEeE---------CCCC----CEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccc
Confidence 357888888 8999 999999999999999997 88999885 899999999999999999999987
Q ss_pred ------CCHHHHHHHHH-HcCCCcccceeEEEc--CCch----HHHHhCCC-CC-----------------------CCc
Q psy2878 84 ------DNEFVKLAWRR-ENSNLYKLNHWQFSD--TNGS----LIDQLGIR-HE-----------------------TGV 126 (181)
Q Consensus 84 ------d~~~~~~~~~~-~~~~~~~~~~~~~~D--~~~~----~~~~~gv~-~~-----------------------~g~ 126 (181)
++.+++++|++ ++ +++||++++ .++. +.+-+.-. .. ..+
T Consensus 68 f~~qe~~~~~ei~~f~~~~~----g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i 143 (183)
T PRK10606 68 FLGQEPGSDEEIKTYCRTTW----GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDI 143 (183)
T ss_pred cccCCCCCHHHHHHHHHHcc----CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcc
Confidence 45678889997 55 899999954 3322 22222100 00 001
Q ss_pred c-eeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 127 A-LRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 127 ~-~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
. +-+-||||++|+++.++. ........++.++|+++
T Consensus 144 ~WNF~KFLv~~~G~vv~r~~--~~~~p~~~~i~~~i~~~ 180 (183)
T PRK10606 144 LWNFEKFLVGRDGQVIQRFS--PDMTPEDPIVMESIKLA 180 (183)
T ss_pred cccCEEEEECCCCcEEEEEC--CCCCCCHHHHHHHHHHH
Confidence 1 235899999999999994 33333444566666544
No 48
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.83 E-value=6.8e-20 Score=166.79 Aligned_cols=123 Identities=14% Similarity=0.134 Sum_probs=106.7
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeec-CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITE-SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l-~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
..|.++|+|..... +.+| +++++ ++++||++||+|| ++||++|+.++|.|++++++|+++++.||+|
T Consensus 392 ~~g~~~p~f~~~~~-------~~~g----~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV 459 (1057)
T PLN02919 392 KTATKVPEFPPKLD-------WLNT----APLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGV 459 (1057)
T ss_pred ccCCcCCCCccccc-------ccCC----ccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEE
Confidence 46899999988721 3688 89998 6899999999999 8899999999999999999999889999999
Q ss_pred ec---C---CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 82 SS---D---NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 82 s~---d---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
+. | +.+..++|+.++ +++||++.|.+..+++.|++. ..|++||||++|+|++++.+
T Consensus 460 ~~~~~D~~~~~~~~~~~~~~~----~i~~pvv~D~~~~~~~~~~V~-----~iPt~ilid~~G~iv~~~~G 521 (1057)
T PLN02919 460 HSAKFDNEKDLEAIRNAVLRY----NISHPVVNDGDMYLWRELGVS-----SWPTFAVVSPNGKLIAQLSG 521 (1057)
T ss_pred ecccccccccHHHHHHHHHHh----CCCccEEECCchHHHHhcCCC-----ccceEEEECCCCeEEEEEec
Confidence 74 2 245566777776 999999999999999999987 67899999999999999853
No 49
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.82 E-value=1e-19 Score=129.06 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=85.1
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCC-HHHHHHHHHHcCCCcccceeEEE
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDN-EFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
+++++++++||++||+|| ++||++|+.+++.|++++++++++ ++.+++|+.|. .+..++|.+++ + +|..+.
T Consensus 8 ~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~----~-~~~~~~ 81 (132)
T cd02964 8 GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM----P-PWLAVP 81 (132)
T ss_pred ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC----C-CeEeec
Confidence 489999999999999998 889999999999999999999875 79999999885 45777888876 4 444432
Q ss_pred --c--CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 109 --D--TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 109 --D--~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
| ....+++.|++. ..|+++|||++|+|+++.
T Consensus 82 ~~d~~~~~~~~~~~~v~-----~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 82 FEDEELRELLEKQFKVE-----GIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred cCcHHHHHHHHHHcCCC-----CCCEEEEECCCCCEEchh
Confidence 3 235788889987 568999999999999776
No 50
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.82 E-value=4e-20 Score=130.77 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=86.1
Q ss_pred CCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCCHH-HHHHHHHHcCCC
Q psy2878 23 PEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDNEF-VKLAWRRENSNL 99 (181)
Q Consensus 23 ~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~~~-~~~~~~~~~~~~ 99 (181)
.|.+| +.+++++++||++||+|| ++||+.|+.+++.|++++++++++ ++++++|+.|... ..+++.+++ ..
T Consensus 4 ~~~~G----~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~-~~ 77 (131)
T cd03009 4 LRNDG----GKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKM-PW 77 (131)
T ss_pred cccCC----CCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcC-Ce
Confidence 37899 999999999999999998 789999999999999999999875 7999999998643 334444432 00
Q ss_pred cccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 100 YKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 100 ~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
..+++.. .|.+..+++.|++. ..|+++|||++|+|+...
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 78 LAVPFSD-RERRSRLNRTFKIE-----GIPTLIILDADGEVVTTD 116 (131)
T ss_pred eEcccCC-HHHHHHHHHHcCCC-----CCCEEEEECCCCCEEccc
Confidence 1222222 34457899999987 568999999999998765
No 51
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.77 E-value=5e-18 Score=125.34 Aligned_cols=108 Identities=9% Similarity=0.102 Sum_probs=82.9
Q ss_pred CcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCccccee
Q psy2878 26 NNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHW 105 (181)
Q Consensus 26 ~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~ 105 (181)
+| +.+++++++ ||+|| ++|||+|+.++|.|+++++++ ++.|++||.|... ...||
T Consensus 62 dG----~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~-------------~~~fP 116 (181)
T PRK13728 62 NG----RQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG-------------DTAFP 116 (181)
T ss_pred CC----CEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC-------------CCCCc
Confidence 78 999999998 66677 899999999999999999887 6999999987531 36899
Q ss_pred EEEc-CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEE-EEeccCCCCCCHHHHHHHHHhhc
Q psy2878 106 QFSD-TNGSLIDQLGIRHETGVALRATFIFDPQNIIQH-ITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 106 ~~~D-~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~-~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++.| ....+.+.||+. -...|++||||++|++++ .+.+. .+.+++.+.++++.
T Consensus 117 v~~dd~~~~~~~~~g~~---~~~iPttfLId~~G~i~~~~~~G~----~~~~~L~~~I~~ll 171 (181)
T PRK13728 117 EALPAPPDVMQTFFPNI---PVATPTTFLVNVNTLEALPLLQGA----TDAAGFMARMDTVL 171 (181)
T ss_pred eEecCchhHHHHHhCCC---CCCCCeEEEEeCCCcEEEEEEECC----CCHHHHHHHHHHHH
Confidence 9995 567788889841 015789999999999976 55432 23445555555443
No 52
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.8e-17 Score=114.63 Aligned_cols=125 Identities=20% Similarity=0.383 Sum_probs=110.9
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+++|+++|+|++. +.+. +.++++++.||..+|.-|++-.+|+|..+...+++...++. ++.|+.|
T Consensus 18 ~~vGd~ap~ftl~---------~~dL----~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~I 82 (158)
T COG2077 18 PQVGDKAPDFTLV---------GKDL----NDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCI 82 (158)
T ss_pred CccCCcCCceEEE---------cCcc----cceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEE
Confidence 6899999999999 6777 89999999999999999999999999999999998877776 5899999
Q ss_pred ecCCHHHHHHHHHHcCCCcccc-eeEEEcC-CchHHHHhCCC-CC---CCcceeeEEEEcCCCcEEEEEe
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLN-HWQFSDT-NGSLIDQLGIR-HE---TGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~-~~~~~D~-~~~~~~~~gv~-~~---~g~~~p~~~liD~~g~i~~~~~ 145 (181)
|+|-|.++.+|+... ++. ...++|- +..+.++||+. .. .|+..|+.|++|.+|+|+|..+
T Consensus 83 S~DLPFAq~RfC~ae----Gi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 83 SMDLPFAQKRFCGAE----GIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred eCCChhHHhhhhhhc----CcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence 999999999999987 665 7778885 56799999998 33 4777899999999999999985
No 53
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.73 E-value=4.1e-17 Score=120.96 Aligned_cols=122 Identities=19% Similarity=0.341 Sum_probs=96.8
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEec
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSS 83 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~ 83 (181)
...|+|++. |++| +++++++++||++||+|+++.|-..|+..+..|+++++++.+. +++++.||.
T Consensus 30 ~~~~~f~L~---------d~~G----~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISv 96 (174)
T PF02630_consen 30 RIVPDFTLT---------DQDG----KTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISV 96 (174)
T ss_dssp CSSST-EEE---------ETTS----SEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred ccCCCcEEE---------cCCC----CEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEe
Confidence 456778888 9999 9999999999999999998887678999999999999999884 689999998
Q ss_pred CC----HHHHHHHHHHcCCCcccceeEEEcC---CchHHHHhCCC-CC-----CC-----cceeeEEEEcCCCcEEEEE
Q psy2878 84 DN----EFVKLAWRRENSNLYKLNHWQFSDT---NGSLIDQLGIR-HE-----TG-----VALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 84 d~----~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~-~~-----~g-----~~~p~~~liD~~g~i~~~~ 144 (181)
|| ++.+++|++.+ +.+|..+.-. -.++++.|++. .. .+ .|...+|||||+|+|+..+
T Consensus 97 DP~~DTp~~L~~Y~~~~----~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 97 DPERDTPEVLKKYAKKF----GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp STTTC-HHHHHHHHHCH----TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred CCCCCCHHHHHHHHHhc----CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence 76 67788888876 6666655432 36788889987 11 11 2566899999999999988
No 54
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.72 E-value=4e-17 Score=109.04 Aligned_cols=90 Identities=20% Similarity=0.399 Sum_probs=72.7
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHH-hcCcEEEEEecCCH-HHHHHHHHHcCCCcccceeEEEcC---CchHH
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN-ERNAILLGGSSDNE-FVKLAWRRENSNLYKLNHWQFSDT---NGSLI 115 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~-~~~~~vi~Is~d~~-~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~ 115 (181)
||+++|+|| ++||+.|..+++.|.++++++. +.++++|+||.|.. +..+++.++. +.+|..+... ...+.
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN----NFPWYNVPFDDDNNSELL 75 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC----TTSSEEEETTTHHHHHHH
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc----CCCceEEeeCcchHHHHH
Confidence 799999999 8899999999999999999999 56899999999863 5666666654 5566665543 47889
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcE
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNII 140 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i 140 (181)
+.|++. ..|+.+|+|++|+|
T Consensus 76 ~~~~i~-----~iP~~~lld~~G~I 95 (95)
T PF13905_consen 76 KKYGIN-----GIPTLVLLDPDGKI 95 (95)
T ss_dssp HHTT-T-----SSSEEEEEETTSBE
T ss_pred HHCCCC-----cCCEEEEECCCCCC
Confidence 999987 67899999999987
No 55
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.66 E-value=3.9e-15 Score=113.08 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=107.0
Q ss_pred CCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHH-h--cCcEEEEEecCCHHHHHHHHHHc
Q psy2878 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN-E--RNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 20 ~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~-~--~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
|.|.|++| +++++.+++||+.||+|.++.|..+|+.++..|.++++++. . .+++++.||.|+..+..+.++++
T Consensus 50 f~l~d~~G----~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 50 FELTDQDG----KPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred eeeecCCC----CEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 44449999 99999999999999999988877799999999999999998 3 57899999998866666666666
Q ss_pred CC-CcccceeEEEcC---CchHHHHhCCC-C---CC---C---cceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 97 SN-LYKLNHWQFSDT---NGSLIDQLGIR-H---ET---G---VALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 97 ~~-~~~~~~~~~~D~---~~~~~~~~gv~-~---~~---g---~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
.. .+...|..+... ..++++.|++. . .. . .|+...||||++|+++..+.+..+ .+++++.|+
T Consensus 126 ~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~----~~~i~~~l~ 201 (207)
T COG1999 126 AELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP----PEEIAADLK 201 (207)
T ss_pred hcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC----hHHHHHHHH
Confidence 44 446667777652 37889999987 1 11 1 245678999999999998853322 677888777
Q ss_pred hhcc
Q psy2878 163 AIQT 166 (181)
Q Consensus 163 ~l~~ 166 (181)
.+..
T Consensus 202 ~l~~ 205 (207)
T COG1999 202 KLLK 205 (207)
T ss_pred HHhh
Confidence 6643
No 56
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.1e-14 Score=100.25 Aligned_cols=138 Identities=17% Similarity=0.351 Sum_probs=110.1
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChh-HHHHHHHHHHHHHhcCc-E
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPT-EISEYNKLVKDFNERNA-I 77 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~-~~~~l~~l~~~~~~~~~-~ 77 (181)
|+.+|+++|+.++....++. +..| ...++-.++ +||.++|+-.++.++|.|.. ++|.+.+++++|+++|+ +
T Consensus 2 ~~~vg~klP~vtf~tr~~~~---~~~~---~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~ 75 (165)
T COG0678 2 TIMVGKKLPAVTFKTRVGDE---TADG---WVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDE 75 (165)
T ss_pred ccccCCcCCceEeEEeeccc---cCCC---cccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCce
Confidence 46799999999998543320 1222 123444454 88999999999999999966 89999999999999999 8
Q ss_pred EEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-C--CCC---cceeeEEEEcCCCcEEEEEecc
Q psy2878 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-H--ETG---VALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~--~~g---~~~p~~~liD~~g~i~~~~~~~ 147 (181)
|+.||++++..+.+|++...... ...+++|.++++.+.+|+. + ..| .++|...|+ +||.|.+.++.+
T Consensus 76 I~cVSVND~FVm~AWak~~g~~~--~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~ 148 (165)
T COG0678 76 IYCVSVNDAFVMNAWAKSQGGEG--NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEP 148 (165)
T ss_pred EEEEEeCcHHHHHHHHHhcCCCc--cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecC
Confidence 89999999999999999873222 5788999999999999998 3 233 357888899 599999999754
No 57
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.59 E-value=5.5e-15 Score=107.14 Aligned_cols=102 Identities=11% Similarity=0.128 Sum_probs=68.9
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
+.+++++ +.||+|| ++||++|+.++|.|+++++++ ++.|++|+.|.... ..|+...|.+
T Consensus 45 ~~~~l~~----~~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~-------------~~fp~~~~~~ 103 (153)
T TIGR02738 45 RHANQDD----YALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL-------------TGFPDPLPAT 103 (153)
T ss_pred hhhhcCC----CEEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc-------------cccccccCCc
Confidence 5555544 4588888 889999999999999999887 68999999886321 1344444433
Q ss_pred chHH-HHh---CCCCCCCcceeeEEEEcCCCcEEE-EEeccCCCCCCHHHHHHHHHh
Q psy2878 112 GSLI-DQL---GIRHETGVALRATFIFDPQNIIQH-ITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 112 ~~~~-~~~---gv~~~~g~~~p~~~liD~~g~i~~-~~~~~~~~~~~~~~ll~~l~~ 163 (181)
.... +.| ++. ..|++||||++|++++ .+.+. .+.+++.+.|++
T Consensus 104 ~~~~~~~~~~~~v~-----~iPTt~LID~~G~~i~~~~~G~----~s~~~l~~~I~~ 151 (153)
T TIGR02738 104 PEVMQTFFPNPRPV-----VTPATFLVNVNTRKAYPVLQGA----VDEAELANRMDE 151 (153)
T ss_pred hHHHHHHhccCCCC-----CCCeEEEEeCCCCEEEEEeecc----cCHHHHHHHHHH
Confidence 4443 445 444 5689999999988655 45332 234455555554
No 58
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.8e-14 Score=99.14 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=87.2
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC--------CHHHHHHHHHH
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD--------NEFVKLAWRRE 95 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d--------~~~~~~~~~~~ 95 (181)
+.+| ++++|++++||.+||+.. |+-|..-+ +...|+.||++|+++|+.|+++-.+ +.+++++|+..
T Consensus 12 ~~~G----~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~ 85 (162)
T COG0386 12 DIDG----EPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQL 85 (162)
T ss_pred ccCC----CCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHh
Confidence 9999 999999999999888887 66787654 9999999999999999999999753 46788888886
Q ss_pred cCCCcccceeEEEcCC---chHHHHhCCC--CC------CCcc-eeeEEEEcCCCcEEEEEe
Q psy2878 96 NSNLYKLNHWQFSDTN---GSLIDQLGIR--HE------TGVA-LRATFIFDPQNIIQHITV 145 (181)
Q Consensus 96 ~~~~~~~~~~~~~D~~---~~~~~~~gv~--~~------~g~~-~p~~~liD~~g~i~~~~~ 145 (181)
. ++.+||++.-.+ ...+..|.-. .. ..+- +.+-||||++|+|+.++.
T Consensus 86 ~---YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 86 N---YGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred c---cCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 4 699999997522 2222222222 11 1122 457899999999999994
No 59
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.50 E-value=1.8e-13 Score=98.22 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=76.6
Q ss_pred eeeecCC--CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEc
Q psy2878 32 KVITESS--FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSD 109 (181)
Q Consensus 32 ~~~~l~~--~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D 109 (181)
....+.+ .+||++||+|| +.||+.|+.+++.|.++++++.. .+.++.|..|...
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~---------------------- 64 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK---------------------- 64 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc----------------------
Confidence 4444443 36889999998 88999999999999999999875 4788888887521
Q ss_pred CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccCC
Q psy2878 110 TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGK 168 (181)
Q Consensus 110 ~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~~ 168 (181)
...+++.|++. ..|+++++|++|+++..+.+. ...+++.+.|+++..+.
T Consensus 65 -~~~~~~~~~V~-----~iPt~v~~~~~G~~v~~~~G~----~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 65 -WLPEIDRYRVD-----GIPHFVFLDREGNEEGQSIGL----QPKQVLAQNLDALVAGE 113 (142)
T ss_pred -cHHHHHHcCCC-----CCCEEEEECCCCCEEEEEeCC----CCHHHHHHHHHHHHcCC
Confidence 01456778886 568999999999999988532 23466666676665443
No 60
>KOG2792|consensus
Probab=99.43 E-value=4.5e-13 Score=102.33 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=101.5
Q ss_pred cccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-C--cEEEEEecCC----HH
Q psy2878 15 GVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-N--AILLGGSSDN----EF 87 (181)
Q Consensus 15 ~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~--~~vi~Is~d~----~~ 87 (181)
..+|+|.|.|.+| +.++-.++.|||+||+|-++.|...|+.|+..|.+..+++++. + +.-+.||.|+ ++
T Consensus 117 ~iGGpF~L~d~~G----k~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~ 192 (280)
T KOG2792|consen 117 AIGGPFSLVDHDG----KRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVE 192 (280)
T ss_pred ccCCceEEEecCC----CeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHH
Confidence 4567788889999 9999999999999999987776668999999999999999884 3 3468888876 56
Q ss_pred HHHHHHHHcCCCcccceeEEEcC---CchHHHHhCCC-CC------CCc---ceeeEEEEcCCCcEEEEEeccCCCCCCH
Q psy2878 88 VKLAWRRENSNLYKLNHWQFSDT---NGSLIDQLGIR-HE------TGV---ALRATFIFDPQNIIQHITVNNLNVGRNP 154 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~-~~------~g~---~~p~~~liD~~g~i~~~~~~~~~~~~~~ 154 (181)
.+++|..++ +....-+... =..+++.|.|| .. +.+ ++=..|||||+|..+..+ ....+.
T Consensus 193 ~~~eY~~eF----~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~----GrN~~~ 264 (280)
T KOG2792|consen 193 VVAEYVSEF----HPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY----GRNYDA 264 (280)
T ss_pred HHHHHHHhc----ChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh----cccCCH
Confidence 667777765 6555444432 27889999998 11 111 234578999999998766 223455
Q ss_pred HHHHHHHHh
Q psy2878 155 IETLRILDA 163 (181)
Q Consensus 155 ~~ll~~l~~ 163 (181)
+++.+.|.+
T Consensus 265 ~~~~~~I~~ 273 (280)
T KOG2792|consen 265 DELADSILK 273 (280)
T ss_pred HHHHHHHHH
Confidence 666666543
No 61
>KOG0541|consensus
Probab=99.43 E-value=2e-12 Score=91.67 Aligned_cols=140 Identities=19% Similarity=0.323 Sum_probs=105.0
Q ss_pred CCccCccCCCcEEecccCCCCCCC-CCcccceeeeecCCC-CCCeEEEEEeeCCCCCCC-hhHHHHHHHHHHHHHhcCc-
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPE-ENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVC-PTEISEYNKLVKDFNERNA- 76 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d-~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C-~~~~~~l~~l~~~~~~~~~- 76 (181)
|+.+|+.+|+-+.....++ .+ ..| .+++++++ +||-++|+=.++.+.|.| ..++|.+.+..++++++|+
T Consensus 8 ~i~vGd~~p~~~is~~~~~---~~~~~~----~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd 80 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISLFEDE---PEQLQG----NTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVD 80 (171)
T ss_pred cccccCccccccchhhccC---cccccc----ceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCc
Confidence 4789999999333211110 01 112 28899887 888898988999999996 7789999999999999999
Q ss_pred EEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC--C--C-cceeeEEEEcCCCcEEEEEeccCCC
Q psy2878 77 ILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE--T--G-VALRATFIFDPQNIIQHITVNNLNV 150 (181)
Q Consensus 77 ~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~--~--g-~~~p~~~liD~~g~i~~~~~~~~~~ 150 (181)
+|+.||+|++..+.+|.+.+.... ...+++|+++++.+.+|+. +. . | .+-|...+++ ||+|.+..+.+.+.
T Consensus 81 ~iicvSVnDpFv~~aW~k~~g~~~--~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vve-ngkV~~~nvE~~g~ 157 (171)
T KOG0541|consen 81 EIICVSVNDPFVMKAWAKSLGAND--HVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVE-NGKVTVVNVEEGGT 157 (171)
T ss_pred EEEEEecCcHHHHHHHHhhcCccc--eEEEEecCCCceeeeccceeeeccccCccccccEEEEEe-CCeEEEEEeccCCC
Confidence 788999999999999999882222 4667899999999999987 32 2 2 2344566775 99999999855444
No 62
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.41 E-value=1.4e-12 Score=102.97 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=79.5
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
+...+++++|+++||+|| ++||++|..++|.|+++.+++ ++.|++||.|.... ..|+.+ +.+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~-------------~~fp~~-~~d 218 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL-------------PGFPNA-RPD 218 (271)
T ss_pred HHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc-------------ccCCcc-cCC
Confidence 457888999999999888 789999999999999998887 59999999986421 124544 445
Q ss_pred chHHHHhCCCCCCCcceeeEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 112 GSLIDQLGIRHETGVALRATFIFDPQ-NIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 112 ~~~~~~~gv~~~~g~~~p~~~liD~~-g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
..+++.||+. ..|++||+|++ |++.....+. -..+++.+.+..+.+
T Consensus 219 ~~la~~~gV~-----~vPtl~Lv~~~~~~v~~v~~G~----~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 219 AGQAQQLKIR-----TVPAVFLADPDPNQFTPIGFGV----MSADELVDRILLAAH 265 (271)
T ss_pred HHHHHHcCCC-----cCCeEEEEECCCCEEEEEEeCC----CCHHHHHHHHHHHhc
Confidence 6789999997 67899999996 4554444222 234566666655543
No 63
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.36 E-value=1.2e-11 Score=83.84 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=66.9
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
++.+||++||.|| ++||++|+.++|.|.++.+++ .++.++.|+.|..... .++++
T Consensus 11 ~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~----------------------~~l~~ 65 (103)
T cd02985 11 KKAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDST----------------------MELCR 65 (103)
T ss_pred HHcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHH----------------------HHHHH
Confidence 3446899999998 889999999999999999998 4688999988763321 24566
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
.|++. ..|+.+++ ++|+++..+.+ ...+++.+.+.
T Consensus 66 ~~~V~-----~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~~~ 100 (103)
T cd02985 66 REKII-----EVPHFLFY-KDGEKIHEEEG-----IGPDELIGDVL 100 (103)
T ss_pred HcCCC-----cCCEEEEE-eCCeEEEEEeC-----CCHHHHHHHHH
Confidence 77876 45675555 89999988853 33456666554
No 64
>KOG1651|consensus
Probab=99.33 E-value=1.9e-11 Score=87.76 Aligned_cols=122 Identities=12% Similarity=0.158 Sum_probs=91.1
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC--
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD-- 84 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d-- 84 (181)
.+=+|+.. |.+| +.++|+.|+||++|++.. |+.|..-..+..+|+.++++|+++|+.|++.-.+
T Consensus 13 siydf~~~---------d~~G----~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQF 78 (171)
T KOG1651|consen 13 SIYDFSAK---------DLDG----EYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQF 78 (171)
T ss_pred ceeeeEEe---------cCCC----CCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccc
Confidence 34467777 9999 999999999999999988 7789888888999999999999999999999753
Q ss_pred ------CHHHHHHHHHHcCCCcccceeEEEc--CCc-hHHHHhCCC-C-CC-----Ccc-eeeEEEEcCCCcEEEEEe
Q psy2878 85 ------NEFVKLAWRRENSNLYKLNHWQFSD--TNG-SLIDQLGIR-H-ET-----GVA-LRATFIFDPQNIIQHITV 145 (181)
Q Consensus 85 ------~~~~~~~~~~~~~~~~~~~~~~~~D--~~~-~~~~~~gv~-~-~~-----g~~-~p~~~liD~~g~i~~~~~ 145 (181)
..+++..|+.. +++..|+++.- -++ ..+..|... . .. .+. +.+-||||++|+++.++.
T Consensus 79 g~QEp~~n~Ei~~f~~~---r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 79 GNQEPGSNEEILNFVKV---RYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred cCcCCCCcHHHHHHHHh---ccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 34566666653 25888888863 232 222333333 1 11 222 356899999999999995
No 65
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.27 E-value=7.3e-11 Score=81.14 Aligned_cols=91 Identities=9% Similarity=0.111 Sum_probs=69.9
Q ss_pred CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
...|++++|.|| +.||+.|+...|.+.++.++++..++.+..|+.+. +..+++.
T Consensus 21 ~~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-------------------------~~~l~~~ 74 (111)
T cd02963 21 KSFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-------------------------ERRLARK 74 (111)
T ss_pred ccCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-------------------------cHHHHHH
Confidence 346789999998 99999999999999999999987678888887663 2356778
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
|++. ..|+++++. +|+++....+. ...+++.+.|+++
T Consensus 75 ~~V~-----~~Pt~~i~~-~g~~~~~~~G~----~~~~~l~~~i~~~ 111 (111)
T cd02963 75 LGAH-----SVPAIVGII-NGQVTFYHDSS----FTKQHVVDFVRKL 111 (111)
T ss_pred cCCc-----cCCEEEEEE-CCEEEEEecCC----CCHHHHHHHHhcC
Confidence 8886 678999994 99987776321 3456677776653
No 66
>KOG2501|consensus
Probab=99.25 E-value=6.4e-11 Score=84.92 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=85.5
Q ss_pred CCCCCcccceeeeecC-CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCC-HHHHHHHHHHcC
Q psy2878 22 LPEENNVSAFKVITES-SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDN-EFVKLAWRRENS 97 (181)
Q Consensus 22 ~~d~~G~~~~~~~~l~-~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~-~~~~~~~~~~~~ 97 (181)
|...+| ..+..+ .++||.+.++| .+.|||+|+.-.|.|.+.|++..+. .+.||.||.|. .+++.+|...+
T Consensus 17 l~~~~~----~~~~~~~~l~gKvV~lyF-sA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~- 90 (157)
T KOG2501|consen 17 LRKQDG----TEVLASEALQGKVVGLYF-SAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH- 90 (157)
T ss_pred eeccCC----ccchHhHhhCCcEEEEEE-EEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc-
Confidence 346777 666666 67999666665 5999999999999999999999985 48999999986 56777788776
Q ss_pred CCcccceeEEEc---CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 98 NLYKLNHWQFSD---TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 98 ~~~~~~~~~~~D---~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
+.+|..+.= ...++.+.|++. ..|+..++.++|+++...
T Consensus 91 ---~~~W~~iPf~d~~~~~l~~ky~v~-----~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 91 ---HGDWLAIPFGDDLIQKLSEKYEVK-----GIPALVILKPDGTVVTED 132 (157)
T ss_pred ---CCCeEEecCCCHHHHHHHHhcccC-----cCceeEEecCCCCEehHh
Confidence 666666642 237788888886 457999999999988655
No 67
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.25 E-value=5.5e-11 Score=80.28 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=63.4
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
++++||+++|.|| ++||++|+.++|.+.++.++++ ++.++.|..+. ....+++
T Consensus 14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~------------------------~~~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS------------------------IKPSLLS 66 (100)
T ss_pred HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC------------------------CCHHHHH
Confidence 4678999999999 9999999999999999999986 57777775441 1246778
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
+|++. ..|++++++ +| .+..+.+. .+.+++.+
T Consensus 67 ~~~V~-----~~PT~~lf~-~g-~~~~~~G~----~~~~~l~~ 98 (100)
T cd02999 67 RYGVV-----GFPTILLFN-ST-PRVRYNGT----RTLDSLAA 98 (100)
T ss_pred hcCCe-----ecCEEEEEc-CC-ceeEecCC----CCHHHHHh
Confidence 89987 678999997 45 55555322 44555554
No 68
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.24 E-value=4e-11 Score=83.97 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=72.9
Q ss_pred CC-CeEEEEEeeCCCCCCChhHHHHHH---HHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 40 PG-KWKIFYFYPKDFTFVCPTEISEYN---KLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 40 ~g-k~~ll~F~~~~~cp~C~~~~~~l~---~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
.| |+++|+|| ++||+.|....+.+. ++.+.+++ ++.++.|+.+.......| ........+++
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~------------~~~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDF------------DGEALSEKELA 77 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeecc------------CCCCccHHHHH
Confidence 57 88989888 999999999988874 55555653 688888888754322221 11112457899
Q ss_pred HHhCCCCCCCcceeeEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 116 DQLGIRHETGVALRATFIFDPQ-NIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~-g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
++|++. ..|+++++|++ |+++....+. ...+++.+.|+.+.+
T Consensus 78 ~~~~v~-----~~Pt~~~~~~~gg~~~~~~~G~----~~~~~~~~~l~~~~~ 120 (125)
T cd02951 78 RKYRVR-----FTPTVIFLDPEGGKEIARLPGY----LPPDEFLAYLEYVQE 120 (125)
T ss_pred HHcCCc-----cccEEEEEcCCCCceeEEecCC----CCHHHHHHHHHHHHh
Confidence 999987 67899999999 8999888532 234556666665543
No 69
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=99.22 E-value=1.2e-10 Score=88.97 Aligned_cols=137 Identities=16% Similarity=0.097 Sum_probs=101.2
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceee-eecCCC-CC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKV-ITESSF-PG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~-~~l~~~-~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
.+|..||+..+. ..+| +. .++.|+ +| ||+||+|-.. .||+-+..+..++++.++|.+. ++++
T Consensus 74 ~~G~~APns~vv---------~l~g----~~~~~ildf~~g~RPLVlnFGS~-TCPpF~~~l~~f~~l~~~f~d~-adFl 138 (237)
T PF00837_consen 74 KLGGPAPNSPVV---------TLDG----QRSCRILDFAKGNRPLVLNFGSC-TCPPFMAKLDAFKRLVEDFSDV-ADFL 138 (237)
T ss_pred eCCCCCCCCceE---------eeCC----CcceeHHHhccCCCCeEEEcccc-cchHHHHHHHHHHHHHHHhhhh-hhee
Confidence 579999999999 6777 77 899998 44 7999999744 4999999999999999999974 4565
Q ss_pred EEec------C---------------C-HHHHHHHHHHcCCCcccceeEEEcC-CchHHHHhCCCCCCCcceeeEEEEcC
Q psy2878 80 GGSS------D---------------N-EFVKLAWRRENSNLYKLNHWQFSDT-NGSLIDQLGIRHETGVALRATFIFDP 136 (181)
Q Consensus 80 ~Is~------d---------------~-~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~gv~~~~g~~~p~~~liD~ 136 (181)
.|-. | + .+.+.+ ++... ...+.+|++.|. ++...+.||++ |. ..|||.
T Consensus 139 ~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~a-A~~l~-~~~~~~pi~vD~mdN~~~~~YgA~-----Pe-RlyIi~- 209 (237)
T PF00837_consen 139 IVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRA-AKLLK-EEFPQCPIVVDTMDNNFNKAYGAL-----PE-RLYIIQ- 209 (237)
T ss_pred hhhHhhhCcCCCccCCCCceeecCCCCHHHHHHH-HHHHH-hhCCCCCEEEEccCCHHHHHhCCC-----cc-eEEEEE-
Confidence 5532 1 0 111111 11111 124789999996 78999999976 43 577774
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 137 QNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 137 ~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+|+|+|.. +..+-.-+++++.+.|++.
T Consensus 210 ~gkv~Y~G-g~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 210 DGKVVYKG-GPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCEEEEeC-CCCCCcCCHHHHHHHHHhc
Confidence 99999999 4555567899999999875
No 70
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.17 E-value=3.4e-10 Score=76.59 Aligned_cols=87 Identities=7% Similarity=0.149 Sum_probs=65.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.|++++|+|| ++||++|+...+.|.++++++....+.++.|..|.. +++++|+
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~--------------------------~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTI--------------------------DTLKRYR 68 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCH--------------------------HHHHHcC
Confidence 4788999998 999999999999999999988755567777776621 2446778
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+++.+..+ ...++++++|+++
T Consensus 69 v~-----~~Pt~~~~-~~g~~~~~~~G-----~~~~~~~~~i~~~ 102 (102)
T cd02948 69 GK-----CEPTFLFY-KNGELVAVIRG-----ANAPLLNKTITEL 102 (102)
T ss_pred CC-----cCcEEEEE-ECCEEEEEEec-----CChHHHHHHHhhC
Confidence 76 56765555 69999988853 3457788777654
No 71
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.13 E-value=7e-10 Score=73.87 Aligned_cols=85 Identities=12% Similarity=0.165 Sum_probs=63.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+|++++|+|| +.||++|+...+.+.++.+.+.. .+.++.|..+. ...+++.|+
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA-------------------------QPQIAQQFG 63 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC-------------------------CHHHHHHcC
Confidence 4788999998 89999999999999999998865 36666666543 246777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
+. ..|++++++ +|+++..+.+. .+.+++.+.|
T Consensus 64 i~-----~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~l 95 (96)
T cd02956 64 VQ-----ALPTVYLFA-AGQPVDGFQGA----QPEEQLRQML 95 (96)
T ss_pred CC-----CCCEEEEEe-CCEEeeeecCC----CCHHHHHHHh
Confidence 87 678999997 99998776422 3345555444
No 72
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.12 E-value=4.3e-10 Score=76.14 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=64.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
.||+++|.|| ++||++|....+.+ .++.+.+++ ++.++.|..+..+.. ..++++
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~---------------------~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPE---------------------ITALLK 66 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHH---------------------HHHHHH
Confidence 4788999998 89999999888777 567777765 788888886542110 135667
Q ss_pred HhCCCCCCCcceeeEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 117 QLGIRHETGVALRATFIFDP-QNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~-~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
.|++. ..|+++++++ +|+++.++.+. ...+++.+.|
T Consensus 67 ~~~i~-----~~Pti~~~~~~~g~~~~~~~G~----~~~~~l~~~l 103 (104)
T cd02953 67 RFGVF-----GPPTYLFYGPGGEPEPLRLPGF----LTADEFLEAL 103 (104)
T ss_pred HcCCC-----CCCEEEEECCCCCCCCcccccc----cCHHHHHHHh
Confidence 78876 6789999999 99988777422 2345555544
No 73
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.11 E-value=2e-10 Score=78.66 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=66.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHH--hcCcEEEEEecCCHHH-HHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN--ERNAILLGGSSDNEFV-KLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~--~~~~~vi~Is~d~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
+||++|++|+ ..|||.|....+.+.+..+--. +.++.++.++.+.... ..++.... +..+.. ....++++
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~l~~ 76 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFD----GQKNVR--LSNKELAQ 76 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHT----CHSSCH--HHHHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccc----cchhhh--HHHHHHHH
Confidence 4789999998 8899999988888776544222 2358888888876543 33344432 221211 22458999
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
.||+. .+|+++++|++|+++++..+- ...+++++.
T Consensus 77 ~~~v~-----gtPt~~~~d~~G~~v~~~~G~----~~~~~l~~~ 111 (112)
T PF13098_consen 77 RYGVN-----GTPTIVFLDKDGKIVYRIPGY----LSPEELLKM 111 (112)
T ss_dssp HTT-------SSSEEEECTTTSCEEEEEESS------HHHHHHH
T ss_pred HcCCC-----ccCEEEEEcCCCCEEEEecCC----CCHHHHHhh
Confidence 99997 678999999999999887532 233555544
No 74
>PRK09381 trxA thioredoxin; Provisional
Probab=99.04 E-value=3.4e-09 Score=72.27 Aligned_cols=86 Identities=13% Similarity=0.215 Sum_probs=64.8
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.|||.|+...|.++++.+++.. ++.++.|..+.. ..+++.|++
T Consensus 21 ~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~-------------------------~~~~~~~~v 73 (109)
T PRK09381 21 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-------------------------PGTAPKYGI 73 (109)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC-------------------------hhHHHhCCC
Confidence 578888888 88999999999999999999975 478888876542 235567887
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
. ..|+++++ ++|++++...+. ...+++.+.|++
T Consensus 74 ~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~ 106 (109)
T PRK09381 74 R-----GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDA 106 (109)
T ss_pred C-----cCCEEEEE-eCCeEEEEecCC----CCHHHHHHHHHH
Confidence 6 67788888 699999888432 234566666654
No 75
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.03 E-value=5e-09 Score=72.07 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=68.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++++||.|| ++||++|+...|.|.++.+++.+. +.++-|..|. ..+++..|+
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~-------------------------~~~la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE-------------------------VPDFNKMYE 65 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC-------------------------CHHHHHHcC
Confidence 3578888888 999999999999999999988643 5777777764 246677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCC------CCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNV------GRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~------~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+.+.+..+..+. ..+-+.+++.+..+
T Consensus 66 V~-----~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 66 LY-----DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred CC-----CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 87 56788888 699999998643221 24456677766654
No 76
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.99 E-value=3.9e-09 Score=72.16 Aligned_cols=87 Identities=13% Similarity=0.187 Sum_probs=63.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH-Hh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID-QL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~ 118 (181)
+||+++|.|| +.||++|+...+.+.++.+++++.++.+..|..|... ..+++ .|
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~------------------------~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ------------------------REFAKEEL 74 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc------------------------hhhHHhhc
Confidence 4788888888 9999999999999999999998767888888777511 12233 36
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
++. ..|+.++++++++..+.+.+ ...+.++++.
T Consensus 75 ~v~-----~~Pti~~f~~~~~~~~~y~g---~~~~~~~l~~ 107 (109)
T cd02993 75 QLK-----SFPTILFFPKNSRQPIKYPS---EQRDVDSLLM 107 (109)
T ss_pred CCC-----cCCEEEEEcCCCCCceeccC---CCCCHHHHHh
Confidence 765 56799999888776666622 1246666654
No 77
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.98 E-value=6.8e-09 Score=69.74 Aligned_cols=85 Identities=11% Similarity=0.186 Sum_probs=60.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+|+ ++|.|| +.||++|+...|.+.++.+.++..++.+..|..+. +..++++|+
T Consensus 16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------------------------~~~~~~~~~ 68 (101)
T cd02994 16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------------------------EPGLSGRFF 68 (101)
T ss_pred CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------------------------CHhHHHHcC
Confidence 566 568887 88999999999999999988765567776665432 234667788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
+. ..|+++++ ++|++ ..+.+ ....+++.+.|+
T Consensus 69 i~-----~~Pt~~~~-~~g~~-~~~~G----~~~~~~l~~~i~ 100 (101)
T cd02994 69 VT-----ALPTIYHA-KDGVF-RRYQG----PRDKEDLISFIE 100 (101)
T ss_pred Cc-----ccCEEEEe-CCCCE-EEecC----CCCHHHHHHHHh
Confidence 86 56788877 78986 44422 245566666654
No 78
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.97 E-value=5.5e-09 Score=71.16 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=63.6
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC--------CHHHHHHHHHH
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD--------NEFVKLAWRRE 95 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d--------~~~~~~~~~~~ 95 (181)
|.+| ++++|++++||++||+.. ++-|..-. +...|++++++|+++|+.|+++-.+ +.+++++|+..
T Consensus 8 ~~~G----~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~ 81 (108)
T PF00255_consen 8 DIDG----KPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKE 81 (108)
T ss_dssp BTTS----SEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCH
T ss_pred CCCC----CEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHh
Confidence 9999 999999999999999988 66788766 9999999999999999999999753 35667777776
Q ss_pred cCCCcccceeEEE
Q psy2878 96 NSNLYKLNHWQFS 108 (181)
Q Consensus 96 ~~~~~~~~~~~~~ 108 (181)
. ++..|+++.
T Consensus 82 ~---~~~~F~vf~ 91 (108)
T PF00255_consen 82 K---FGVTFPVFE 91 (108)
T ss_dssp C---HT-SSEEBS
T ss_pred c---cCCcccceE
Confidence 2 478888875
No 79
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.92 E-value=9.1e-09 Score=69.94 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=64.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.|++++|.|| +.||+.|....+.+.++.+++.. .+.++.|+.+.. .+.+++++|+
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~-----------------------~~~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED-----------------------KNKPLCGKYG 71 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc-----------------------ccHHHHHHcC
Confidence 3678888888 88999999999999999988864 478888887752 1346777888
Q ss_pred CCCCCCcceeeEEEEcCCCc----EEEEEeccCCCCCCHHHHHHHH
Q psy2878 120 IRHETGVALRATFIFDPQNI----IQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~----i~~~~~~~~~~~~~~~~ll~~l 161 (181)
+. ..|+.+++++.+. +...+. -....+++.+.|
T Consensus 72 i~-----~~Pt~~~~~~~~~~~~~~~~~~~----G~~~~~~l~~fi 108 (109)
T cd03002 72 VQ-----GFPTLKVFRPPKKASKHAVEDYN----GERSAKAIVDFV 108 (109)
T ss_pred CC-----cCCEEEEEeCCCccccccccccc----CccCHHHHHHHh
Confidence 87 5789999987763 333331 134666666654
No 80
>PRK10996 thioredoxin 2; Provisional
Probab=98.92 E-value=1.7e-08 Score=72.11 Aligned_cols=88 Identities=9% Similarity=0.128 Sum_probs=64.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|+|| +.||+.|+...+.|.++.+++.. ++.++.|..+. +.+++++|+
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA-------------------------ERELSARFR 103 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC-------------------------CHHHHHhcC
Confidence 4688888888 88999999999999999988764 47777775532 346778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+++..+.+. ...+++.+.|+++
T Consensus 104 V~-----~~Ptlii~-~~G~~v~~~~G~----~~~e~l~~~l~~~ 138 (139)
T PRK10996 104 IR-----SIPTIMIF-KNGQVVDMLNGA----VPKAPFDSWLNEA 138 (139)
T ss_pred CC-----ccCEEEEE-ECCEEEEEEcCC----CCHHHHHHHHHHh
Confidence 87 56787776 599999887432 3445666666543
No 81
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.91 E-value=2.1e-08 Score=67.07 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=56.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++++|| +.||+.|....+.+.++.+++.. ++.++-|..+. +.++++.|+
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~-------------------------~~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE-------------------------DQEIAEAAG 64 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC-------------------------CHHHHHHCC
Confidence 3577888887 88999999999999999988864 47777776553 235666778
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+. ..|++++++ +|+++....
T Consensus 65 v~-----~vPt~~i~~-~g~~v~~~~ 84 (97)
T cd02949 65 IM-----GTPTVQFFK-DKELVKEIS 84 (97)
T ss_pred Ce-----eccEEEEEE-CCeEEEEEe
Confidence 76 678999995 899987774
No 82
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.88 E-value=2e-08 Score=67.96 Aligned_cols=87 Identities=9% Similarity=0.137 Sum_probs=59.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
+++.++|.|| ++||++|+...|.+.++.++++..+ +.+..+..+. ...+++.
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-------------------------~~~~~~~ 67 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-------------------------YSSIASE 67 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-------------------------CHhHHhh
Confidence 3467777777 9999999999999999999997654 4444444332 2356778
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
|++. ..|+.++++ +|. ...+.+ ....+++.+.+++
T Consensus 68 ~~I~-----~~Pt~~l~~-~~~-~~~~~G----~~~~~~l~~~~~~ 102 (104)
T cd03000 68 FGVR-----GYPTIKLLK-GDL-AYNYRG----PRTKDDIVEFANR 102 (104)
T ss_pred cCCc-----cccEEEEEc-CCC-ceeecC----CCCHHHHHHHHHh
Confidence 8886 678999994 453 344422 2345666666654
No 83
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.87 E-value=2.8e-08 Score=67.10 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=56.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|.|| +.||+.|+...|.+.++.+++.. .+.+..|..+. +.++++.|+
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 70 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQK-------------------------YESLCQQAN 70 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc-------------------------hHHHHHHcC
Confidence 3568888888 89999999999999999998853 46777776553 235667788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+. ..|+.+++.+.|+.+..+.
T Consensus 71 i~-----~~Pt~~~~~~g~~~~~~~~ 91 (104)
T cd03004 71 IR-----AYPTIRLYPGNASKYHSYN 91 (104)
T ss_pred CC-----cccEEEEEcCCCCCceEcc
Confidence 76 5779999976658777774
No 84
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.86 E-value=1.3e-08 Score=68.27 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=54.6
Q ss_pred eEEEEEeeCCCCCCChhHHHHHHHHHHHHHh--cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 43 WKIFYFYPKDFTFVCPTEISEYNKLVKDFNE--RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 43 ~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~--~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
.++|.|| +.||+.|+..+|.+.+++++++. ..+.++.|..+. +..+++.|++
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-------------------------~~~~~~~~~v 71 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ-------------------------HRELCSEFQV 71 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC-------------------------ChhhHhhcCC
Confidence 4888887 88999999999999999999986 346666665442 2356677887
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
. ..|+.+++ ++|+.+..+.
T Consensus 72 ~-----~~Pt~~~~-~~g~~~~~~~ 90 (102)
T cd03005 72 R-----GYPTLLLF-KDGEKVDKYK 90 (102)
T ss_pred C-----cCCEEEEE-eCCCeeeEee
Confidence 6 56788888 6888877664
No 85
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.86 E-value=1.1e-08 Score=68.76 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=55.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|.|| +.||+.|+...|.+.++.++++. .+.+..|..+.. ..+++.|+
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~-------------------------~~~~~~~~ 69 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD-------------------------RMLCRSQG 69 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc-------------------------HHHHHHcC
Confidence 4578888888 89999999999999999999875 377778887642 24566777
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
+. ..|+.+++ ++|+.+..+
T Consensus 70 v~-----~~Pt~~~~-~~g~~~~~~ 88 (101)
T cd03003 70 VN-----SYPSLYVF-PSGMNPEKY 88 (101)
T ss_pred CC-----ccCEEEEE-cCCCCcccC
Confidence 75 56788888 788876555
No 86
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.84 E-value=3.5e-08 Score=65.93 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=63.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC-cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN-AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
++++++|.|| ++||+.|+...+.+.++.+.++..+ +.++.+..+. +..+.+.|
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------------------------~~~~~~~~ 65 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-------------------------EKDLASRF 65 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-------------------------hHHHHHhC
Confidence 5788999998 8899999999999999988887653 5554444322 24666778
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
++. ..|+.+++++++. ...+.+ ....+++...|++
T Consensus 66 ~i~-----~~P~~~~~~~~~~-~~~~~g----~~~~~~l~~~i~~ 100 (102)
T TIGR01126 66 GVS-----GFPTIKFFPKGKK-PVDYEG----GRDLEAIVEFVNE 100 (102)
T ss_pred CCC-----cCCEEEEecCCCc-ceeecC----CCCHHHHHHHHHh
Confidence 886 5789999998877 444532 2445667776664
No 87
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.83 E-value=3.7e-08 Score=67.04 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=58.2
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-----CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-----NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-----~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
+++++|.|| +.||+.|+...|.+.++.+++++. .+.+..|.. |.+..++
T Consensus 18 ~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~-------------------------d~~~~l~ 71 (108)
T cd02996 18 AELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC-------------------------DKESDIA 71 (108)
T ss_pred CCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC-------------------------CCCHHHH
Confidence 577888887 999999999999999999888643 133333333 3345777
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
++|++. ..|+.+++ ++|++.... +. -..+.+++.+.
T Consensus 72 ~~~~v~-----~~Ptl~~~-~~g~~~~~~-~~--g~~~~~~l~~f 107 (108)
T cd02996 72 DRYRIN-----KYPTLKLF-RNGMMMKRE-YR--GQRSVEALAEF 107 (108)
T ss_pred HhCCCC-----cCCEEEEE-eCCcCccee-cC--CCCCHHHHHhh
Confidence 888887 66788888 789854322 11 13556666553
No 88
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.81 E-value=4.3e-08 Score=65.85 Aligned_cols=76 Identities=13% Similarity=0.242 Sum_probs=54.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
++++++|.|| ++||+.|+...+.+.++.+.+.+. .+.++.|..+.. .+..+.+.|
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~~ 71 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-----------------------EHDALKEEY 71 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-----------------------ccHHHHHhC
Confidence 4568888888 889999999999999999998753 355555554431 134677788
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
++. ..|+.++. ++|+++..+.
T Consensus 72 ~i~-----~~Pt~~~~-~~g~~~~~~~ 92 (104)
T cd02997 72 NVK-----GFPTFKYF-ENGKFVEKYE 92 (104)
T ss_pred CCc-----cccEEEEE-eCCCeeEEeC
Confidence 876 56675555 6899877663
No 89
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.81 E-value=3.2e-08 Score=69.18 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=54.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHH--------HHHHHHHHcCCCcccceeEEEcCC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEF--------VKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~--------~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
.|+.++|+|+ ++|||+|+...|.|.++.++ .++.++-|..|... ++.++.+
T Consensus 22 ~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~~----------------- 80 (122)
T TIGR01295 22 KKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFRS----------------- 80 (122)
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHHH-----------------
Confidence 3566778777 88999999999999999876 35778888887422 2233333
Q ss_pred chHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEecc
Q psy2878 112 GSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 112 ~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~ 147 (181)
.|++. ... ..|+.+++ ++|+.+.++.++
T Consensus 81 -----~~~i~~~i~--~~PT~v~~-k~Gk~v~~~~G~ 109 (122)
T TIGR01295 81 -----RFGIPTSFM--GTPTFVHI-TDGKQVSVRCGS 109 (122)
T ss_pred -----HcCCcccCC--CCCEEEEE-eCCeEEEEEeCC
Confidence 33322 111 35688888 699999988643
No 90
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.81 E-value=4.5e-08 Score=70.87 Aligned_cols=80 Identities=9% Similarity=0.047 Sum_probs=58.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
++++++|.|| ++||++|....|.+.++.+++...++.++.|..|... +++++|+
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~-------------------------~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP-------------------------NVAEKFR 99 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH-------------------------HHHHHcC
Confidence 3567888888 8899999999999999999997767999999887633 2233344
Q ss_pred CCCCCC-cceeeEEEEcCCCcEEEEEec
Q psy2878 120 IRHETG-VALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 120 v~~~~g-~~~p~~~liD~~g~i~~~~~~ 146 (181)
+....+ ...|+.+++ ++|+.+.+..+
T Consensus 100 V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 100 VSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred ceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 430000 035788888 49999988864
No 91
>KOG0910|consensus
Probab=98.80 E-value=6e-08 Score=69.14 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=65.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++||+|.|| +.||.+|....|.|+++..++.. .+++.-|..|. ..+++..|+
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~-------------------------~~ela~~Y~ 112 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDE-------------------------HPELAEDYE 112 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcccc-------------------------ccchHhhcc
Confidence 3579999999 99999999999999999999954 47777776664 356777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+. +.|+++++ ++|..+-+.++. .+.+.+.+.|++
T Consensus 113 I~-----avPtvlvf-knGe~~d~~vG~----~~~~~l~~~i~k 146 (150)
T KOG0910|consen 113 IS-----AVPTVLVF-KNGEKVDRFVGA----VPKEQLRSLIKK 146 (150)
T ss_pred ee-----eeeEEEEE-ECCEEeeeeccc----CCHHHHHHHHHH
Confidence 87 78899999 599998777532 233445555543
No 92
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.80 E-value=7.4e-08 Score=64.02 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=55.5
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| ++||+.|+...+.|.++.+++ ..++.++.|..+. ..+++++|++
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~-------------------------~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE-------------------------LPEISEKFEI 66 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc-------------------------CHHHHHhcCC
Confidence 588888888 899999999999999998887 3356666665321 2467778888
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
. ..|+.+++ ++|+++.+..
T Consensus 67 ~-----~~Pt~~~~-~~g~~~~~~~ 85 (97)
T cd02984 67 T-----AVPTFVFF-RNGTIVDRVS 85 (97)
T ss_pred c-----cccEEEEE-ECCEEEEEEe
Confidence 6 56788888 4899988874
No 93
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.79 E-value=9.5e-08 Score=63.82 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=67.7
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
++++||.|| +.||+.|....|.+.++.+++.. ++.++-|..+. +..+++.|++
T Consensus 17 ~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~v 69 (103)
T PF00085_consen 17 DKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------------------------NKELCKKYGV 69 (103)
T ss_dssp SSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------------------------SHHHHHHTTC
T ss_pred CCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc-------------------------cchhhhccCC
Confidence 578888888 88999999999999999999987 78888887763 2356677888
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
. ..|+.+++ ++|+....+.+. .+.++|.+.|++
T Consensus 70 ~-----~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~ 102 (103)
T PF00085_consen 70 K-----SVPTIIFF-KNGKEVKRYNGP----RNAESLIEFIEK 102 (103)
T ss_dssp S-----SSSEEEEE-ETTEEEEEEESS----SSHHHHHHHHHH
T ss_pred C-----CCCEEEEE-ECCcEEEEEECC----CCHHHHHHHHHc
Confidence 6 56788888 488887766322 567888888875
No 94
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.79 E-value=1.3e-07 Score=65.73 Aligned_cols=88 Identities=7% Similarity=-0.011 Sum_probs=60.8
Q ss_pred CCeEEEEEeeCCCCCC--Ch--hHHHHHHHHHHHH-HhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 41 GKWKIFYFYPKDFTFV--CP--TEISEYNKLVKDF-NERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~--C~--~~~~~l~~l~~~~-~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
.+.++|.||+++||++ |+ ...|.|.++..++ ++.++.+.-|..|. +.+++
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-------------------------~~~La 80 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-------------------------DAKVA 80 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-------------------------CHHHH
Confidence 3445555666889977 98 5667777777766 33467887777765 34677
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+.||+. ..|+.+++ ++|+++. +.+. ...+.+.+.|+++
T Consensus 81 ~~~~I~-----~iPTl~lf-k~G~~v~-~~G~----~~~~~l~~~l~~~ 118 (120)
T cd03065 81 KKLGLD-----EEDSIYVF-KDDEVIE-YDGE----FAADTLVEFLLDL 118 (120)
T ss_pred HHcCCc-----cccEEEEE-ECCEEEE-eeCC----CCHHHHHHHHHHH
Confidence 788887 56788888 5999876 5332 3557777777765
No 95
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.78 E-value=8.8e-09 Score=71.45 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=56.5
Q ss_pred eeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCc
Q psy2878 33 VITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNG 112 (181)
Q Consensus 33 ~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 112 (181)
.+..+..++|+++|.|| ++||++|+...+.+.+...... .+..++.|..|....
T Consensus 11 al~~A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~------------------------ 64 (117)
T cd02959 11 GIKEAKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEE------------------------ 64 (117)
T ss_pred HHHHHHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCC------------------------
Confidence 34445557899999998 8999999999999888765443 345666676654210
Q ss_pred hHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 113 SLIDQLGIRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 113 ~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
.....|++. |...|+++++|++|+++..+.
T Consensus 65 ~~~~~~~~~---g~~vPt~~f~~~~Gk~~~~~~ 94 (117)
T cd02959 65 PKDEEFSPD---GGYIPRILFLDPSGDVHPEII 94 (117)
T ss_pred chhhhcccC---CCccceEEEECCCCCCchhhc
Confidence 011133332 213679999999999988654
No 96
>PHA02278 thioredoxin-like protein
Probab=98.77 E-value=1.1e-07 Score=64.53 Aligned_cols=78 Identities=14% Similarity=0.018 Sum_probs=58.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+++++||.|| +.||++|+...|.+.++.+++.. .+.++-|..|.... | ..++++.|+
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~--------------------d-~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDV--------------------D-REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCcccc--------------------c-cHHHHHHCC
Confidence 5678999998 99999999999999999877532 36777787775211 0 235677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
+. ..|+.+++ ++|+.+.+..+
T Consensus 70 I~-----~iPT~i~f-k~G~~v~~~~G 90 (103)
T PHA02278 70 IM-----STPVLIGY-KDGQLVKKYED 90 (103)
T ss_pred Cc-----cccEEEEE-ECCEEEEEEeC
Confidence 87 66788888 58999988854
No 97
>KOG0907|consensus
Probab=98.76 E-value=1.3e-07 Score=64.42 Aligned_cols=85 Identities=14% Similarity=0.263 Sum_probs=64.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|.+|+.|+ ++||++|+...|.+.++..+|.+ +.++-|..|. . .++++.|+
T Consensus 20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~----------------------~~~~~~~~ 71 (106)
T KOG0907|consen 20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---L----------------------EEVAKEFN 71 (106)
T ss_pred CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---C----------------------HhHHHhcC
Confidence 3588888887 99999999999999999999985 8888898886 1 25566777
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+. ..|+..++ ++|+.+....+ .+.+++.+.+++
T Consensus 72 V~-----~~PTf~f~-k~g~~~~~~vG-----a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 72 VK-----AMPTFVFY-KGGEEVDEVVG-----ANKAELEKKIAK 104 (106)
T ss_pred ce-----EeeEEEEE-ECCEEEEEEec-----CCHHHHHHHHHh
Confidence 76 56777666 79999988863 333455555543
No 98
>PTZ00051 thioredoxin; Provisional
Probab=98.73 E-value=9.3e-08 Score=63.69 Aligned_cols=73 Identities=12% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++.++|+|| +.||+.|+...+.+.++.+++. ++.++.|..+. ...+++.|+
T Consensus 17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~-------------------------~~~~~~~~~ 68 (98)
T PTZ00051 17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE-------------------------LSEVAEKEN 68 (98)
T ss_pred cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc-------------------------hHHHHHHCC
Confidence 3577888888 8899999999999999888654 56777665532 235777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
+. ..|+.+++ ++|+++..+.+
T Consensus 69 v~-----~~Pt~~~~-~~g~~~~~~~G 89 (98)
T PTZ00051 69 IT-----SMPTFKVF-KNGSVVDTLLG 89 (98)
T ss_pred Cc-----eeeEEEEE-eCCeEEEEEeC
Confidence 86 56776555 79999988853
No 99
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.73 E-value=1.8e-07 Score=62.20 Aligned_cols=86 Identities=14% Similarity=0.237 Sum_probs=63.3
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
++.++|+|| +.||+.|+...+.|+++.+++.. ++.++.|..+. +..+.++|++
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE-------------------------NPDIAAKYGI 66 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC-------------------------CHHHHHHcCC
Confidence 467888888 88999999999999999888864 47888777553 2355677887
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
. ..|+.+++ ++|+++....+. .+.+++.+.|++
T Consensus 67 ~-----~~P~~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~ 99 (101)
T TIGR01068 67 R-----SIPTLLLF-KNGKEVDRSVGA----LPKAALKQLINK 99 (101)
T ss_pred C-----cCCEEEEE-eCCcEeeeecCC----CCHHHHHHHHHh
Confidence 6 67899999 689887666322 245666666654
No 100
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.72 E-value=1.1e-06 Score=66.13 Aligned_cols=112 Identities=12% Similarity=0.120 Sum_probs=89.1
Q ss_pred CCCcccceeeeecCCC-CCCe-EEEEEee-----CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 24 EENNVSAFKVITESSF-PGKW-KIFYFYP-----KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~-~gk~-~ll~F~~-----~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
..+| +++|+|+ .||. +||+.|. ..-||.|...+-.+.....-+..+++.++.||..+.+.+.+|+++.
T Consensus 53 g~~G-----~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rm 127 (211)
T PF05988_consen 53 GPDG-----PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRM 127 (211)
T ss_pred CCCC-----cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhc
Confidence 5565 5999996 7764 5555553 4569999999999988888899999999999999999999999998
Q ss_pred CCCcccceeEEEcCCchHHHHhCCC-C-CCCcceeeEEEEcCCCcEEEEEe
Q psy2878 97 SNLYKLNHWQFSDTNGSLIDQLGIR-H-ETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 97 ~~~~~~~~~~~~D~~~~~~~~~gv~-~-~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+..||.+|..+..+...|++. . ....+.-++|+-|. |+|-..+.
T Consensus 128 ----GW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg-~~VfhTys 173 (211)
T PF05988_consen 128 ----GWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDG-GRVFHTYS 173 (211)
T ss_pred ----CCCceEEEcCCCcccccccceeccCCCceeEEEEEEcC-CEEEEEee
Confidence 999999999989999999985 2 22233336777775 88776664
No 101
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.71 E-value=8e-08 Score=64.50 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=56.5
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+++++|.|| +.||+.|+...+.+.++.+.++. .++.++.|..+.+ ...++++|+
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~------------------------~~~~~~~~~ 72 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA------------------------NKDLAKKYG 72 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc------------------------chhhHHhCC
Confidence 568888888 88999999999999999999873 3466666665442 246677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
+. ..|+.+++++.|+....+
T Consensus 73 i~-----~~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 73 VS-----GFPTLKFFPKGSTEPVKY 92 (105)
T ss_pred CC-----CcCEEEEEeCCCCCcccc
Confidence 86 678999998777665555
No 102
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.69 E-value=4.9e-07 Score=63.28 Aligned_cols=106 Identities=8% Similarity=-0.049 Sum_probs=62.4
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHH-H--HHHHHHHHhcCcEEEEEecCCHHHHHH-HHHHcCCCcccceeEEEc
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISE-Y--NKLVKDFNERNAILLGGSSDNEFVKLA-WRRENSNLYKLNHWQFSD 109 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~-l--~~l~~~~~~~~~~vi~Is~d~~~~~~~-~~~~~~~~~~~~~~~~~D 109 (181)
+..+.-.+|+++|+|+ ++||+.|+..-.. + .++.+.+. +++.+|-|..+......+ +.+
T Consensus 8 l~~Ak~~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~--------------- 70 (124)
T cd02955 8 FEKARREDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMN--------------- 70 (124)
T ss_pred HHHHHHcCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHH---------------
Confidence 3334446899999987 9999999876553 2 34444443 355555555543222211 111
Q ss_pred CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCC----CCCCHHHHHHHHHhh
Q psy2878 110 TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLN----VGRNPIETLRILDAI 164 (181)
Q Consensus 110 ~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~----~~~~~~~ll~~l~~l 164 (181)
.....||+. ..|+++++|++|++++...+-.. ......++++.|+++
T Consensus 71 ---~~~~~~~~~-----G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 71 ---AAQAMTGQG-----GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL 121 (124)
T ss_pred ---HHHHhcCCC-----CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHH
Confidence 112245654 45799999999999998853211 123466777777654
No 103
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.68 E-value=9.5e-08 Score=63.17 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=60.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHH-hcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN-ERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~-~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
++++++|.|| +.||+.|....+.+.++.+.++ ..++.++.|+.+. +..+.+.|
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------~~~~~~~~ 67 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-------------------------NNDLCSEY 67 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-------------------------hHHHHHhC
Confidence 3457888888 8899999999999999988885 3457777765443 24666778
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
++. ..|+.++++++|+....+.+. .+.+++.+
T Consensus 68 ~i~-----~~Pt~~~~~~~~~~~~~~~g~----~~~~~i~~ 99 (101)
T cd02961 68 GVR-----GYPTIKLFPNGSKEPVKYEGP----RTLESLVE 99 (101)
T ss_pred CCC-----CCCEEEEEcCCCcccccCCCC----cCHHHHHh
Confidence 876 678999999887555555221 35566554
No 104
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.67 E-value=2.4e-07 Score=66.11 Aligned_cols=96 Identities=9% Similarity=0.097 Sum_probs=65.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++++||.|| ++||++|+...|.|.++.+++.+. +.|+-|.+|.. .+++..|+
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~-------------------------~dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEV-------------------------PDFNTMYE 74 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCC-------------------------HHHHHHcC
Confidence 4578999998 899999999999999999888643 66677777752 35556677
Q ss_pred CCCCCCcceeeEEEEcCCCc-EEEEEeccC----CCCCCHHHHHHHHHhhccC
Q psy2878 120 IRHETGVALRATFIFDPQNI-IQHITVNNL----NVGRNPIETLRILDAIQTG 167 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~-i~~~~~~~~----~~~~~~~~ll~~l~~l~~~ 167 (181)
+. ..|+++++=++|+ .+.+..+.. ......+++++.++.+..+
T Consensus 75 I~-----~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 75 LY-----DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred cc-----CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 65 3456664447888 555554321 1134667777777666543
No 105
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.67 E-value=2e-07 Score=64.21 Aligned_cols=72 Identities=4% Similarity=0.055 Sum_probs=52.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH-HHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI-DQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~ 118 (181)
.+++++|.|| ++||++|+...|.+.++.+++++. +.+..|..+... .++ +.|
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~-------------------------~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQ-------------------------GKCRKQK 80 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCCh-------------------------HHHHHhc
Confidence 3467888888 999999999999999999999753 777777766432 233 356
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
++. ..|+..++ ++|+....+
T Consensus 81 ~I~-----~~PTl~lf-~~g~~~~~y 100 (113)
T cd03006 81 HFF-----YFPVIHLY-YRSRGPIEY 100 (113)
T ss_pred CCc-----ccCEEEEE-ECCccceEE
Confidence 665 45677777 678765554
No 106
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.66 E-value=2.4e-07 Score=63.90 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCC-C-------------------
Q psy2878 64 YNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRH-E------------------- 123 (181)
Q Consensus 64 l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~-~------------------- 123 (181)
|.+..+++++.|+++++|+.++.+..++|++.. ..++++++|++..+.+.+|+.. .
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~----~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 77 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT----GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQS 77 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc----CCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHH
Confidence 667788999999999999999997799999876 8999999999999999999861 1
Q ss_pred ---CC----------cceeeEEEEcCCCcEEEEEe
Q psy2878 124 ---TG----------VALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 124 ---~g----------~~~p~~~liD~~g~i~~~~~ 145 (181)
.+ .....+||+|++|+|+|.|.
T Consensus 78 ~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 78 AKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 00 11456899999999999995
No 107
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.66 E-value=5.6e-07 Score=61.68 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=63.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|.+||.|+ ++||++|+..-|.|.++.+++++. +.++-|.+|.. .++++.|+
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev-------------------------~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKV-------------------------PVYTQYFD 65 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEecccc-------------------------HHHHHhcC
Confidence 4688999998 889999999999999999999643 78888887752 24455566
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCC------CCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNV------GRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~------~~~~~~ll~~l~~l~ 165 (181)
+. +.|+++++ ++|+-.....+..+. -.+-+++++.++.+-
T Consensus 66 I~-----amPtfvff-kngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 66 IS-----YIPSTIFF-FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred ce-----eCcEEEEE-ECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 64 45677666 466655555432211 134466777666543
No 108
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.62 E-value=3.5e-07 Score=63.07 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=49.6
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-C-cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-N-AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~-~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
+++++|.|| +.||++|+...+.+.++.+++++. + +.+..|..+.. .+..+++.|
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~~ 74 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE-----------------------ENVALCRDF 74 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch-----------------------hhHHHHHhC
Confidence 368888888 889999999999999999988753 2 45545543321 123566778
Q ss_pred CCCCCCCcceeeEEEEcCCC
Q psy2878 119 GIRHETGVALRATFIFDPQN 138 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g 138 (181)
++. ..|+.+++.+..
T Consensus 75 ~i~-----~~Pt~~lf~~~~ 89 (114)
T cd02992 75 GVT-----GYPTLRYFPPFS 89 (114)
T ss_pred CCC-----CCCEEEEECCCC
Confidence 876 567999996555
No 109
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.62 E-value=2.1e-07 Score=80.84 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=66.4
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
+..+||+++|+|| ++||+.|+...+.. .++.++++ ++.++-|..+..+. .+.+
T Consensus 470 a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~---------------------~~~~ 525 (571)
T PRK00293 470 AKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNA---------------------EDVA 525 (571)
T ss_pred HHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCCh---------------------hhHH
Confidence 3446899999999 99999998776653 45666664 57777776654211 1246
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcEE--EEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNIIQ--HITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i~--~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+.++|++. ..|+++++|++|+++ .++.+ ..+.+++++.+++++
T Consensus 526 l~~~~~v~-----g~Pt~~~~~~~G~~i~~~r~~G----~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 526 LLKHYNVL-----GLPTILFFDAQGQEIPDARVTG----FMDAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHcCCC-----CCCEEEEECCCCCCcccccccC----CCCHHHHHHHHHHhc
Confidence 67778876 567999999999985 34422 235678888887754
No 110
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.61 E-value=1.2e-07 Score=65.89 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=57.4
Q ss_pred CCCeEEEEEeeC-------CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCc
Q psy2878 40 PGKWKIFYFYPK-------DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNG 112 (181)
Q Consensus 40 ~gk~~ll~F~~~-------~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 112 (181)
+|++++|.|| + +||++|+...|.|.++.++++. ++.++-|..|... .+.|++.
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~------------------~w~d~~~ 79 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRP------------------YWRDPNN 79 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcc------------------cccCcch
Confidence 5789999999 6 8999999999999999988873 5889888887632 2234455
Q ss_pred hHHHHhCCCCCCCcceeeEEEEcCCCcEE
Q psy2878 113 SLIDQLGIRHETGVALRATFIFDPQNIIQ 141 (181)
Q Consensus 113 ~~~~~~gv~~~~g~~~p~~~liD~~g~i~ 141 (181)
++++.|++. . ..|+.+++...++++
T Consensus 80 ~~~~~~~I~--~--~iPT~~~~~~~~~l~ 104 (119)
T cd02952 80 PFRTDPKLT--T--GVPTLLRWKTPQRLV 104 (119)
T ss_pred hhHhccCcc--c--CCCEEEEEcCCceec
Confidence 666777762 1 356888886555554
No 111
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.59 E-value=6.3e-07 Score=61.71 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=54.8
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+.++++|+ +.||++|+...+.+.++.+++ ..+.+.-|..|.. .++++.|++.
T Consensus 23 ~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~-------------------------~~l~~~~~v~ 74 (113)
T cd02975 23 VDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDED-------------------------KEKAEKYGVE 74 (113)
T ss_pred eEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcC-------------------------HHHHHHcCCC
Confidence 44555554 899999999999999888775 3477777776641 2566778887
Q ss_pred CCCCcceeeEEEEcCC---CcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 122 HETGVALRATFIFDPQ---NIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~---g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
..|+.++.+.. |.++ +. +......+.+++++|
T Consensus 75 -----~vPt~~i~~~g~~~~~~~--~~-G~~~~~el~~~i~~i 109 (113)
T cd02975 75 -----RVPTTIFLQDGGKDGGIR--YY-GLPAGYEFASLIEDI 109 (113)
T ss_pred -----cCCEEEEEeCCeecceEE--EE-ecCchHHHHHHHHHH
Confidence 67888888643 3332 32 344444455555554
No 112
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.59 E-value=4.5e-07 Score=69.71 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=61.3
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.||++|+...|.+.++.++++. .+.+..|..+. +..++++|++
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~-------------------------~~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDATR-------------------------ALNLAKRFAI 104 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcc-------------------------cHHHHHHcCC
Confidence 467888888 89999999999999999998874 24444443321 2467788898
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
. ..|++++++ +|+++....+ ....+++.+.+++.
T Consensus 105 ~-----~~PTl~~f~-~G~~v~~~~G----~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 105 K-----GYPTLLLFD-KGKMYQYEGG----DRSTEKLAAFALGD 138 (224)
T ss_pred C-----cCCEEEEEE-CCEEEEeeCC----CCCHHHHHHHHHHH
Confidence 7 567999997 8887655421 24556666665443
No 113
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.58 E-value=1.1e-06 Score=60.47 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=53.0
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.||++|....+.|.++.+++. ++.++-|..+. + .+++.|++
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~-------------------------~-~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK-------------------------A-FLVNYLDI 74 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh-------------------------h-HHHHhcCC
Confidence 478888888 8899999999999999988875 46555554442 1 34556777
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
. ..|+.+++ ++|+++.+..+
T Consensus 75 ~-----~~Pt~~~f-~~G~~v~~~~G 94 (113)
T cd02957 75 K-----VLPTLLVY-KNGELIDNIVG 94 (113)
T ss_pred C-----cCCEEEEE-ECCEEEEEEec
Confidence 5 56777777 68999988864
No 114
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.57 E-value=4.3e-07 Score=69.47 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=70.8
Q ss_pred ecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 35 TESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 35 ~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
.+.++.+++.|++||.+ .|+.|..+.|.|+.+.+++ |+.|+.||.|... -..|+-... +..+
T Consensus 114 ~l~~la~~~gL~~F~~~-~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~-------------~~~fp~~~~-~~g~ 175 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRS-DCPYCQQQAPILQQFADKY---GFSVIPVSLDGRP-------------IPSFPNPRP-DPGQ 175 (215)
T ss_pred HHHHHhhCeEEEEEEcC-CCchhHHHHHHHHHHHHHh---CCEEEEEecCCCC-------------CcCCCCCCC-CHHH
Confidence 34556678898998855 6999999999999998877 7999999999631 112222221 6778
Q ss_pred HHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 115 IDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 115 ~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
++.||+. .+|++||+++++...+....+. -..++|++.
T Consensus 176 ~~~l~v~-----~~Pal~Lv~~~~~~~~pv~~G~---~s~~~L~~r 213 (215)
T PF13728_consen 176 AKRLGVK-----VTPALFLVNPNTKKWYPVSQGF---MSLDELEDR 213 (215)
T ss_pred HHHcCCC-----cCCEEEEEECCCCeEEEEeeec---CCHHHHHHh
Confidence 8899986 7899999999985544442221 234555544
No 115
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.56 E-value=7.7e-07 Score=59.60 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=58.0
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.||+.|+...+.+.++.+++.. .+.+..+..+. +.+++++|++
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~-------------------------~~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADV-------------------------HQSLAQQYGV 70 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcc-------------------------hHHHHHHCCC
Confidence 456888888 89999999999999999988864 46666665532 3466778888
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
. ..|+++++++..+....+. ...+.+++.+.
T Consensus 71 ~-----~~P~~~~~~~~~~~~~~~~----g~~~~~~l~~~ 101 (103)
T cd03001 71 R-----GFPTIKVFGAGKNSPQDYQ----GGRTAKAIVSA 101 (103)
T ss_pred C-----ccCEEEEECCCCcceeecC----CCCCHHHHHHH
Confidence 6 5779999975434333331 13556666554
No 116
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.54 E-value=2.6e-06 Score=58.63 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=56.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|.|| +.||++|+...+.|.++.+++. ++.++-|..+. ...++++|+
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~-------------------------~~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK-------------------------APFLVEKLN 72 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc-------------------------CHHHHHHCC
Confidence 3467888888 8999999999999999988875 46777666654 234667788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
+. ..|+.+++ ++|+++.+..+
T Consensus 73 v~-----~vPt~l~f-k~G~~v~~~~g 93 (113)
T cd02989 73 IK-----VLPTVILF-KNGKTVDRIVG 93 (113)
T ss_pred Cc-----cCCEEEEE-ECCEEEEEEEC
Confidence 76 67788888 59999988754
No 117
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.52 E-value=7.5e-07 Score=60.93 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=57.0
Q ss_pred CCCeEEEEEeeCCC--CCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDF--TFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~--cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
.|.++||.|+ +.| ||.|....|.|.++.+++.+. +.++-|..|. +.+++..
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~-------------------------~~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD-------------------------EQALAAR 78 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC-------------------------CHHHHHH
Confidence 4566888888 665 999999999999999998753 5666666664 2366777
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
|++. ..|+.+++ ++|+++....+
T Consensus 79 f~V~-----sIPTli~f-kdGk~v~~~~G 101 (111)
T cd02965 79 FGVL-----RTPALLFF-RDGRYVGVLAG 101 (111)
T ss_pred cCCC-----cCCEEEEE-ECCEEEEEEeC
Confidence 8887 66788888 69999988853
No 118
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.52 E-value=2.1e-06 Score=55.45 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=53.0
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
++++|+|| +.||+.|....+.++++.+. ..++.++.|+.+. +..+.+.|++.
T Consensus 11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~-------------------------~~~~~~~~~v~ 62 (93)
T cd02947 11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE-------------------------NPELAEEYGVR 62 (93)
T ss_pred CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC-------------------------ChhHHHhcCcc
Confidence 67888887 88999999999999988877 4578888887664 23455667775
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 122 HETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
..|+.+++. +|+++..+.
T Consensus 63 -----~~P~~~~~~-~g~~~~~~~ 80 (93)
T cd02947 63 -----SIPTFLFFK-NGKEVDRVV 80 (93)
T ss_pred -----cccEEEEEE-CCEEEEEEe
Confidence 567888874 788777774
No 119
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.47 E-value=1.6e-06 Score=73.08 Aligned_cols=93 Identities=9% Similarity=0.110 Sum_probs=65.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+++++||.|| +.||++|....|.+.++.++++..++.++.|..|.... . ...+.|+
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~---------------------~~~~~~~ 425 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--E---------------------FAKQELQ 425 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--H---------------------HHHHHcC
Confidence 5678888888 99999999999999999999987778888888874211 1 1223567
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++.+...-...+ . +..++.+.++..|+.+
T Consensus 426 I~-----~~PTii~Fk~g~~~~~~Y--~-~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 426 LG-----SFPTILFFPKHSSRPIKY--P-SEKRDVDSLMSFVNLL 462 (463)
T ss_pred CC-----ccceEEEEECCCCCceeC--C-CCCCCHHHHHHHHHhh
Confidence 65 567888885443211112 1 1247889998888865
No 120
>PLN02309 5'-adenylylsulfate reductase
Probab=98.45 E-value=1.9e-06 Score=72.57 Aligned_cols=93 Identities=10% Similarity=0.164 Sum_probs=66.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH-Hh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID-QL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~ 118 (181)
+++++||.|| +.||++|....+.+.++.+++...++.+..|..|... ..+++ .|
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~------------------------~~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ------------------------KEFAKQEL 418 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc------------------------hHHHHhhC
Confidence 5678888888 9999999999999999999998778888888877311 12222 46
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++. ..|+++++.+..+-...+ .+..++.+.++..|+++.
T Consensus 419 ~I~-----~~PTil~f~~g~~~~v~Y---~~~~R~~~~L~~fv~~~~ 457 (457)
T PLN02309 419 QLG-----SFPTILLFPKNSSRPIKY---PSEKRDVDSLLSFVNSLR 457 (457)
T ss_pred CCc-----eeeEEEEEeCCCCCeeec---CCCCcCHHHHHHHHHHhC
Confidence 665 567888885443321122 122578899999998763
No 121
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.4e-07 Score=70.53 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=59.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+-++|||.|| +.||++|..-+|.|.++..+++.+ +.+.-|+.|. +..++.+||
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~-------------------------~p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA-------------------------EPMVAAQFG 94 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc-------------------------chhHHHHhC
Confidence 4469999999 999999999999999999999753 5555555554 356778899
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+. +.|++|++ ++|+-+.-+.
T Consensus 95 iq-----sIPtV~af-~dGqpVdgF~ 114 (304)
T COG3118 95 VQ-----SIPTVYAF-KDGQPVDGFQ 114 (304)
T ss_pred cC-----cCCeEEEe-eCCcCccccC
Confidence 87 77899999 7999998874
No 122
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.39 E-value=1.5e-06 Score=68.01 Aligned_cols=105 Identities=10% Similarity=0.173 Sum_probs=72.5
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
-.+.++..++.|++||. .-||.|....|.|+.+.+++ |+.+++||.|... ...||... ++..
T Consensus 143 ~~i~~la~~~gL~fFy~-~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~-------------~p~fp~~~-~d~g 204 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYR-GKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL-------------IPGLPNSR-SDSG 204 (256)
T ss_pred HHHHHHHhceeEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC-------------CCCCCCcc-CChH
Confidence 34455667899999995 46999999999999888777 7999999999731 11233322 2567
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
.++.+|+. .+|++||++++.+..+...++. -..++|.+.|..+
T Consensus 205 qa~~l~v~-----~~Pal~Lv~~~t~~~~pv~~G~---iS~deL~~Ri~~v 247 (256)
T TIGR02739 205 QAQHLGVK-----YFPALYLVNPKSQKMSPLAYGF---ISQDELKERILNV 247 (256)
T ss_pred HHHhcCCc-----cCceEEEEECCCCcEEEEeecc---CCHHHHHHHHHHH
Confidence 78889986 6899999999955444332221 2345666555443
No 123
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.37 E-value=3.2e-06 Score=58.14 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=62.2
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcC
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDT 110 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~ 110 (181)
+..+.-++|+++|+|+ +.||+.|....... .++.+.+. .+..++.+..+.++ .
T Consensus 10 ~~~Ak~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e-~--------------------- 65 (114)
T cd02958 10 KQEAKSEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSE-G--------------------- 65 (114)
T ss_pred HHHHHhhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCcc-H---------------------
Confidence 3444456898888888 88999997765442 33334443 34555555555432 1
Q ss_pred CchHHHHhCCCCCCCcceeeEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 111 NGSLIDQLGIRHETGVALRATFIFDP-QNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 111 ~~~~~~~~gv~~~~g~~~p~~~liD~-~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
..+++.|++. ..|+.++||+ +|++++...+. ...++++..|++.
T Consensus 66 -~~~~~~~~~~-----~~P~~~~i~~~~g~~l~~~~G~----~~~~~f~~~L~~~ 110 (114)
T cd02958 66 -QRFLQSYKVD-----KYPHIAIIDPRTGEVLKVWSGN----ITPEDLLSQLIEF 110 (114)
T ss_pred -HHHHHHhCcc-----CCCeEEEEeCccCcEeEEEcCC----CCHHHHHHHHHHH
Confidence 2345556665 5679999999 89999988533 3456777777654
No 124
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=98.36 E-value=1.5e-05 Score=57.43 Aligned_cols=148 Identities=12% Similarity=0.078 Sum_probs=86.6
Q ss_pred CccCccCCCcEEecccCCCCCC--CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHH-HHHHHHHHH-HHhcCcE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLP--EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEI-SEYNKLVKD-FNERNAI 77 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~--d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~-~~l~~l~~~-~~~~~~~ 77 (181)
+.+|.++|...+.+.+.- .|. +... ++++.+.+.||.-||..+.+. +....+. +-+..+.+. |.....+
T Consensus 1 ~~~~~~~p~V~v~d~Gel-~l~~~~~~y----~~W~s~~l~GKVrviq~iAGr--~sake~N~~l~~aik~a~f~~d~yq 73 (160)
T PF09695_consen 1 ITLGQPVPPVTVADKGEL-ILNGDKISY----QPWNSAQLPGKVRVIQHIAGR--SSAKEMNAPLIEAIKAAKFPHDKYQ 73 (160)
T ss_pred CcCCCcCCceEecCCceE-EEcCCcccc----cccCccccCCCEEEEEEeccC--CchhHhhHHHHHHHHHcCCCcccee
Confidence 467999999888743321 000 2334 677778899996655555332 2233332 333334333 4545566
Q ss_pred EEEEe-cCCH-----HHHHHHHHHcCCCccccee-EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC
Q psy2878 78 LLGGS-SDNE-----FVKLAWRRENSNLYKLNHW-QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV 150 (181)
Q Consensus 78 vi~Is-~d~~-----~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~ 150 (181)
..+|- .|+. .-.+..+++. ...++|. ++.|.++.+.+.|++.+ -..+++|+|++|+|++...+. -.
T Consensus 74 tttIiN~dDAi~gt~~fVrss~e~~--kk~~p~s~~vlD~~G~~~~aW~L~~----~~SaiiVlDK~G~V~F~k~G~-Ls 146 (160)
T PF09695_consen 74 TTTIINLDDAIWGTGGFVRSSAEDS--KKEFPWSQFVLDSNGVVRKAWQLQE----ESSAIIVLDKQGKVQFVKEGA-LS 146 (160)
T ss_pred EEEEEecccccccchHHHHHHHHHh--hhhCCCcEEEEcCCCceeccccCCC----CCceEEEEcCCccEEEEECCC-CC
Confidence 66553 4331 1112222221 1255666 67899999999999861 123788999999999999533 23
Q ss_pred CCCHHHHHHHHHh
Q psy2878 151 GRNPIETLRILDA 163 (181)
Q Consensus 151 ~~~~~~ll~~l~~ 163 (181)
..+.+++++.|++
T Consensus 147 ~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 147 PAEVQQVIALLKK 159 (160)
T ss_pred HHHHHHHHHHHhc
Confidence 4566777776653
No 125
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.33 E-value=3.5e-06 Score=65.53 Aligned_cols=104 Identities=11% Similarity=0.114 Sum_probs=71.5
Q ss_pred cCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 36 ESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 36 l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
+.++.+++.|++||.+ -||.|....|.|+.+.+++ |+.|++||.|..- ...||... ++...+
T Consensus 138 i~~la~~~GL~fFy~s-~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~-------------~p~fp~~~-~d~gqa 199 (248)
T PRK13703 138 IAKLAEHYGLMFFYRG-QDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI-------------NPLLPDSR-TDQGQA 199 (248)
T ss_pred HHHHHhcceEEEEECC-CCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC-------------CCCCCCCc-cChhHH
Confidence 4566678999999954 6999999999999888777 7999999999731 12233321 245556
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
..+|+. ..|++||++++.+-.+-..++. -..+++.+.+..+.
T Consensus 200 ~~l~v~-----~~PAl~Lv~~~t~~~~pv~~G~---iS~deL~~Ri~~v~ 241 (248)
T PRK13703 200 QRLGVK-----YFPALMLVDPKSGSVRPLSYGF---ITQDDLAKRFLNVS 241 (248)
T ss_pred HhcCCc-----ccceEEEEECCCCcEEEEeecc---CCHHHHHHHHHHHH
Confidence 788886 6899999999964433332221 24466666665443
No 126
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.32 E-value=9.1e-06 Score=60.26 Aligned_cols=86 Identities=12% Similarity=0.034 Sum_probs=60.5
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+++||.|| +.||++|....+.|.++.+++. ++.++-|..+.. .++..|++.
T Consensus 84 ~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~--------------------------~l~~~f~v~ 134 (175)
T cd02987 84 TTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT--------------------------GASDEFDTD 134 (175)
T ss_pred cEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch--------------------------hhHHhCCCC
Confidence 47888887 8899999999999999998885 578877777631 233456665
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccC---CCCCCHHHHHHHHH
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNL---NVGRNPIETLRILD 162 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~---~~~~~~~~ll~~l~ 162 (181)
..|+.+++ ++|+++....+.. +.....++|-..|.
T Consensus 135 -----~vPTllly-k~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 135 -----ALPALLVY-KGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred -----CCCEEEEE-ECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 56788887 6999998886422 22334555555544
No 127
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.31 E-value=1.3e-05 Score=51.33 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=51.0
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET 124 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~ 124 (181)
|..|| +.||+.|....+.|.++.+++.. .+.++-|..+.. .++++.||+.
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~-------------------------~~~~~~~~v~--- 52 (82)
T TIGR00411 3 IELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN-------------------------PQKAMEYGIM--- 52 (82)
T ss_pred EEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC-------------------------HHHHHHcCCc---
Confidence 34455 89999999999999999988864 367777765431 2345668876
Q ss_pred CcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 125 GVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 125 g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
..|+.++ +|+++ .. +. ...+++.+.|++
T Consensus 53 --~vPt~~~---~g~~~--~~-G~---~~~~~l~~~l~~ 80 (82)
T TIGR00411 53 --AVPAIVI---NGDVE--FI-GA---PTKEELVEAIKK 80 (82)
T ss_pred --cCCEEEE---CCEEE--Ee-cC---CCHHHHHHHHHh
Confidence 5677665 66642 21 11 244666666654
No 128
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.30 E-value=5.5e-06 Score=55.35 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=35.2
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCcEEEEEecC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNAILLGGSSD 84 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~~vi~Is~d 84 (181)
+++++|.|| +.||+.|....+.+.++.+.++. ..+.+..|..+
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 578888888 89999999999999999999876 34666666654
No 129
>PTZ00102 disulphide isomerase; Provisional
Probab=98.29 E-value=5.2e-06 Score=70.42 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=65.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.||.++|.|| +.||+.|+...|.+.++.+.+++. .+.+.-|..+. +...++.|
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~-------------------------~~~~~~~~ 427 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA-------------------------NETPLEEF 427 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC-------------------------CccchhcC
Confidence 4788999998 899999999999999999888764 34554454432 12334566
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
++. ..|+.+++++++++...+.+ ....+.+.+.|++...
T Consensus 428 ~v~-----~~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 428 SWS-----AFPTILFVKAGERTPIPYEG----ERTVEGFKEFVNKHAT 466 (477)
T ss_pred CCc-----ccCeEEEEECCCcceeEecC----cCCHHHHHHHHHHcCC
Confidence 665 46799999988876545532 2567888888877654
No 130
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=98.28 E-value=1.3e-05 Score=61.24 Aligned_cols=128 Identities=9% Similarity=0.053 Sum_probs=89.5
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc---CcEEEEEecCCHHHHHHH--HHHcCCCcccceeE
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER---NAILLGGSSDNEFVKLAW--RRENSNLYKLNHWQ 106 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~---~~~vi~Is~d~~~~~~~~--~~~~~~~~~~~~~~ 106 (181)
..-.+.+.+|+++||.+..+ +|..|..++.+|..|..+++++ ++.++.|+.....+...+ +++. ....+++
T Consensus 17 ~~~pm~~~~G~VtvVALL~a-sc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r---~~~~ipV 92 (238)
T PF04592_consen 17 GQDPMLNSLGHVTVVALLQA-SCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRR---VSEHIPV 92 (238)
T ss_pred CchHhhhcCCcEEeeeehhh-hhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHh---CCCCCce
Confidence 34556778899888888855 7999999999999999999996 468888886543333322 2221 2445899
Q ss_pred EE-c-CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccCCcc
Q psy2878 107 FS-D-TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLC 170 (181)
Q Consensus 107 ~~-D-~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~~~~ 170 (181)
+. | .+.+++..++-. .--.||+|+-|++.|...-+.+ .-...-+.++|+.......|
T Consensus 93 yqq~~~q~dvW~~L~G~------kdD~~iyDRCGrL~~~i~~P~S-~l~~~~ve~Ai~~ty~~~~C 151 (238)
T PF04592_consen 93 YQQDENQPDVWELLNGS------KDDFLIYDRCGRLTYHIPLPYS-FLQFPYVEAAIKSTYCEDPC 151 (238)
T ss_pred ecCCccccCHHHHhCCC------cCcEEEEeccCcEEEEecCcHH-HhcCHHHHHHHHHHHccccC
Confidence 86 3 558888888742 2357899999999998842222 22456677777777655555
No 131
>PTZ00102 disulphide isomerase; Provisional
Probab=98.22 E-value=1.1e-05 Score=68.37 Aligned_cols=90 Identities=18% Similarity=0.293 Sum_probs=63.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
+++.++|.|| +.||+.|....|.+.++.+.+++.+ +.+.-|..+ .+..+++.
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~-------------------------~~~~l~~~ 101 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT-------------------------EEMELAQE 101 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC-------------------------CCHHHHHh
Confidence 4677888887 8999999999999999988887654 444444332 23567788
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
|++. ..|+.+++...+.+ .+.+ ..+.+++.+.++++..
T Consensus 102 ~~i~-----~~Pt~~~~~~g~~~--~y~g----~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 102 FGVR-----GYPTIKFFNKGNPV--NYSG----GRTADGIVSWIKKLTG 139 (477)
T ss_pred cCCC-----cccEEEEEECCceE--EecC----CCCHHHHHHHHHHhhC
Confidence 8886 56799999755444 3322 2567888888877654
No 132
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.21 E-value=1.5e-05 Score=67.01 Aligned_cols=91 Identities=13% Similarity=0.202 Sum_probs=64.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
++++++|.|| +.||+.|....+.+.++.+.+.+.+ +.++.|..+. +.++++.
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~ 70 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------------------------EKDLAQK 70 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------------------------cHHHHHh
Confidence 4677888887 8999999999999999999888765 6666665442 2467788
Q ss_pred hCCCCCCCcceeeEEEEcCCCcE-EEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 118 LGIRHETGVALRATFIFDPQNII-QHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i-~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
|++. ..|+.+++ ++|+. +..+.+ ..+.+++.+.+.+...
T Consensus 71 ~~i~-----~~Pt~~~~-~~g~~~~~~~~g----~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 71 YGVS-----GYPTLKIF-RNGEDSVSDYNG----PRDADGIVKYMKKQSG 110 (462)
T ss_pred CCCc-----cccEEEEE-eCCccceeEecC----CCCHHHHHHHHHHhcC
Confidence 8886 56777777 57776 555532 2456777777766543
No 133
>KOG4498|consensus
Probab=98.21 E-value=1.1e-05 Score=59.42 Aligned_cols=130 Identities=12% Similarity=0.207 Sum_probs=95.9
Q ss_pred CCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCccc
Q psy2878 24 EENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKL 102 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 102 (181)
|..| +++.+.++ +.+..+|.|.+-.-|-.|+.+...|..+.+-+++.|+.+|+|..........|..+. .+
T Consensus 36 ~~rg----~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~----~f 107 (197)
T KOG4498|consen 36 DSRG----ESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT----YF 107 (197)
T ss_pred hhcC----ceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc----Cc
Confidence 5667 89999998 445788999988889999999999999988888899999999976655555655554 45
Q ss_pred ceeEEEcCCchHHHHhCCC-CC--------------------------CCcceeeEEEEcCCCcEEEEEeccCCCCC--C
Q psy2878 103 NHWQFSDTNGSLIDQLGIR-HE--------------------------TGVALRATFIFDPQNIIQHITVNNLNVGR--N 153 (181)
Q Consensus 103 ~~~~~~D~~~~~~~~~gv~-~~--------------------------~g~~~p~~~liD~~g~i~~~~~~~~~~~~--~ 153 (181)
.-.++.|++..+...++.. .. ++......+++.+.++|.+.|.. .+..+ +
T Consensus 108 ~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~d-k~~gD~~~ 186 (197)
T KOG4498|consen 108 SGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVD-KETGDHVP 186 (197)
T ss_pred ceeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEec-CCCCCCcC
Confidence 5578888876655444432 10 11235568899888899999973 33333 7
Q ss_pred HHHHHHHHH
Q psy2878 154 PIETLRILD 162 (181)
Q Consensus 154 ~~~ll~~l~ 162 (181)
++++++++.
T Consensus 187 i~~Vl~v~~ 195 (197)
T KOG4498|consen 187 IDSVLQVVG 195 (197)
T ss_pred HHHHHHHhh
Confidence 889988774
No 134
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.18 E-value=2.2e-05 Score=55.26 Aligned_cols=96 Identities=7% Similarity=0.015 Sum_probs=54.5
Q ss_pred cCCCCCCeEEEEEeeCCCCCCChhHHHHH--HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 36 ESSFPGKWKIFYFYPKDFTFVCPTEISEY--NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 36 l~~~~gk~~ll~F~~~~~cp~C~~~~~~l--~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
.+.-.||+++|+|+ +.||+.|...-..+ .+-..++-+++ ++.|..+.... .. +.. +
T Consensus 18 ~Ak~~~Kpvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~--Fv~V~l~~d~t-----d~-----~~~------~--- 75 (130)
T cd02960 18 KAKKSNKPLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQED--FIMLNLVHETT-----DK-----NLS------P--- 75 (130)
T ss_pred HHHHCCCeEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhC--eEEEEEEeccC-----CC-----CcC------c---
Confidence 33446899999977 99999998776654 22222333334 45555442110 00 111 0
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC------CCCHHHHHHHHHh
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV------GRNPIETLRILDA 163 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~------~~~~~~ll~~l~~ 163 (181)
.|. ..|+++++|++|+++....+-.+. ..+++.+.+..++
T Consensus 76 ----~g~------~vPtivFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~ 121 (130)
T cd02960 76 ----DGQ------YVPRIMFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKK 121 (130)
T ss_pred ----cCc------ccCeEEEECCCCCCcccccccccCccceeCcCcHHHHHHHHHH
Confidence 111 357999999999998777532211 2456666665543
No 135
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.16 E-value=1.4e-05 Score=61.19 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=58.9
Q ss_pred CCCCCeEEEEEee--CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 38 SFPGKWKIFYFYP--KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 38 ~~~gk~~ll~F~~--~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
..++...++.|+. +.||++|....|.+.++.+++. ++++..+..|.++ +.+++
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~~-----------------------~~~l~ 70 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTPE-----------------------DKEEA 70 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCcc-----------------------cHHHH
Confidence 3444445666764 3999999999999999988884 4555566665421 34777
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEE-EEeccCCCCCCHHHHHHHH
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQH-ITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~-~~~~~~~~~~~~~~ll~~l 161 (181)
+.|++. ..|+.++++ +|+.+. ++.+ ......+.++++.+
T Consensus 71 ~~~~V~-----~~Pt~~~f~-~g~~~~~~~~G-~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 71 EKYGVE-----RVPTTIILE-EGKDGGIRYTG-IPAGYEFAALIEDI 110 (215)
T ss_pred HHcCCC-----ccCEEEEEe-CCeeeEEEEee-cCCHHHHHHHHHHH
Confidence 888887 667888876 677764 5532 33333333444333
No 136
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=98.06 E-value=5.2e-05 Score=59.34 Aligned_cols=137 Identities=8% Similarity=0.091 Sum_probs=82.4
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCC-CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-c--CcEEEEEe
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESS-FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-R--NAILLGGS 82 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~-~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~--~~~vi~Is 82 (181)
..|+|... +.+| +.+++.+ ++||..||..+...|...|...... ...++|.. . .+++|-|+
T Consensus 100 yFP~l~g~---------tL~g----~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In 164 (252)
T PF05176_consen 100 YFPNLQGK---------TLAG----NKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEIN 164 (252)
T ss_pred cCCCCccc---------cCCC----CCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEe
Confidence 35777777 7778 7887765 4899877766656666555444433 34445544 3 68999999
Q ss_pred cCCHHHHHHHHHHcCC---------CcccceeEEEcC--CchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCC
Q psy2878 83 SDNEFVKLAWRRENSN---------LYKLNHWQFSDT--NGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVG 151 (181)
Q Consensus 83 ~d~~~~~~~~~~~~~~---------~~~~~~~~~~D~--~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~ 151 (181)
.... -++.|+.+... ...-.+-+..+. ...+-+.+|+. ...+..+||||++|+|+++.. +....
T Consensus 165 ~~e~-~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~---N~~~GYvyLVD~~grIRWags-G~At~ 239 (252)
T PF05176_consen 165 LIEN-WLKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGIN---NSYVGYVYLVDPNGRIRWAGS-GPATP 239 (252)
T ss_pred cchH-HHHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCC---CCCcCeEEEECCCCeEEeCcc-CCCCH
Confidence 7642 22333332210 012233333332 45777888886 223557999999999999985 33334
Q ss_pred CCHHHHHHHHHh
Q psy2878 152 RNPIETLRILDA 163 (181)
Q Consensus 152 ~~~~~ll~~l~~ 163 (181)
.+.+.+.+.++.
T Consensus 240 ~E~~~L~k~~~~ 251 (252)
T PF05176_consen 240 EELESLWKCVKG 251 (252)
T ss_pred HHHHHHHHHHhc
Confidence 455555555543
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=98.06 E-value=4.4e-05 Score=57.91 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=46.8
Q ss_pred EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCC
Q psy2878 44 KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE 123 (181)
Q Consensus 44 ~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 123 (181)
+|++|| +.|||.|+...+.|.++.++|. ++.++-|..| |++.
T Consensus 20 ~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d---------------------------------~~V~-- 61 (204)
T PTZ00062 20 LVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA---------------------------------DANN-- 61 (204)
T ss_pred EEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc---------------------------------cCcc--
Confidence 555555 9999999999999999999886 4778777644 6665
Q ss_pred CCcceeeEEEEcCCCcEEEEEe
Q psy2878 124 TGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 124 ~g~~~p~~~liD~~g~i~~~~~ 145 (181)
..|+.+++ ++|+++.+..
T Consensus 62 ---~vPtfv~~-~~g~~i~r~~ 79 (204)
T PTZ00062 62 ---EYGVFEFY-QNSQLINSLE 79 (204)
T ss_pred ---cceEEEEE-ECCEEEeeee
Confidence 55677777 5999988875
No 138
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.95 E-value=0.00011 Score=55.21 Aligned_cols=85 Identities=15% Similarity=0.206 Sum_probs=60.5
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
++++||.|| +.||+.|....+.|.++..++. .+.|+-|..+.. +..|++
T Consensus 102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~----------------------------~~~~~i 150 (192)
T cd02988 102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQC----------------------------IPNYPD 150 (192)
T ss_pred CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHh----------------------------HhhCCC
Confidence 357888888 8899999999999999999985 578887776521 124555
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCC---CCCHHHHHHHHH
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNV---GRNPIETLRILD 162 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~---~~~~~~ll~~l~ 162 (181)
. ..|+.+++ ++|+++...++...- ....+++-..|.
T Consensus 151 ~-----~lPTlliy-k~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 151 K-----NLPTILVY-RNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred C-----CCCEEEEE-ECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 4 46788887 799999988753222 334555555544
No 139
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.94 E-value=6.6e-05 Score=44.31 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=34.2
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
+.|| ..||+.|....+.+.++ ++...++.++.++.+.......
T Consensus 2 ~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 44 (69)
T cd01659 2 VLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEK 44 (69)
T ss_pred EEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhh
Confidence 4555 78999999999999988 5666789999999987655444
No 140
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.93 E-value=0.00016 Score=46.07 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=26.4
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
+.|| ++|||.|....+.+.++.+++.. .+.+ +..|
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~~~-~~~~--~~v~ 37 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEELGI-DAEF--EKVT 37 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHcCC-CeEE--EEeC
Confidence 6677 79999999999999999888753 2444 4444
No 141
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.89 E-value=0.00018 Score=54.34 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=69.4
Q ss_pred eeecCCC-CCCeE-EEE-Eee----CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCccccee
Q psy2878 33 VITESSF-PGKWK-IFY-FYP----KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHW 105 (181)
Q Consensus 33 ~~~l~~~-~gk~~-ll~-F~~----~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~ 105 (181)
+.+|+|+ .||.- ||+ |.+ ..-||.|...+-.+.-...-++.+++.+++||.-+.+++..+.++. +..|+
T Consensus 63 ~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm----GW~f~ 138 (247)
T COG4312 63 KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM----GWQFP 138 (247)
T ss_pred chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc----CCcce
Confidence 7889886 67643 333 222 2348888888888877777888899999999999999999999998 99999
Q ss_pred EEEcCCchHHHHhCCC
Q psy2878 106 QFSDTNGSLIDQLGIR 121 (181)
Q Consensus 106 ~~~D~~~~~~~~~gv~ 121 (181)
.+++.+..+-+.|.+.
T Consensus 139 w~Ss~~s~Fn~Df~vs 154 (247)
T COG4312 139 WVSSTDSDFNRDFQVS 154 (247)
T ss_pred eEeccCcccccccccc
Confidence 9999999999999774
No 142
>smart00594 UAS UAS domain.
Probab=97.85 E-value=0.00031 Score=48.86 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
+.-.+|.++|+|+ +.||+.|......+ .++.+.+ ++++.++.+..+..+. .+
T Consensus 23 Ak~~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-----------------------~~ 77 (122)
T smart00594 23 ASRQRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-----------------------QR 77 (122)
T ss_pred HHhhcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-----------------------HH
Confidence 3346788988888 88999998776653 2333444 3456666666555432 34
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCC-----cEEEEEeccCCCCCCHHHHHHHH
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQN-----IIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g-----~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
++..|++. ..|+..++|++| .++... .-....++++..|
T Consensus 78 l~~~~~~~-----~~P~~~~l~~~~g~~~~~~~~~~----~G~~~~~~l~~~l 121 (122)
T smart00594 78 VSQFYKLD-----SFPYVAIVDPRTGQRVIEWVGVV----EGEISPEELMTFL 121 (122)
T ss_pred HHHhcCcC-----CCCEEEEEecCCCceeEEEeccc----cCCCCHHHHHHhh
Confidence 56667765 467999999997 233333 2223466666654
No 143
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.75 E-value=0.0003 Score=43.30 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=25.6
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
+..|+ +.|||.|....+.|+++.++. .++.+.-|..+
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~ 39 (67)
T cd02973 3 IEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAA 39 (67)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcc
Confidence 44555 889999988888887775543 35677666554
No 144
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.75 E-value=0.00024 Score=46.71 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=45.4
Q ss_pred CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
++++. +-+.+|.+.||+.|+...+.+.++.+++. ++.+..+..+.. .+++..
T Consensus 9 ~l~~p-v~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~-------------------------~e~a~~ 60 (89)
T cd03026 9 RLNGP-INFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALF-------------------------QDEVEE 60 (89)
T ss_pred hcCCC-EEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhC-------------------------HHHHHH
Confidence 45544 44555558999999988777777776553 466666655431 345567
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEE
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHI 143 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~ 143 (181)
||+. ..|+++ + ||++++.
T Consensus 61 ~~V~-----~vPt~v-i--dG~~~~~ 78 (89)
T cd03026 61 RGIM-----SVPAIF-L--NGELFGF 78 (89)
T ss_pred cCCc-----cCCEEE-E--CCEEEEe
Confidence 7876 566775 4 6888764
No 145
>PHA02125 thioredoxin-like protein
Probab=97.72 E-value=0.00049 Score=43.60 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=43.2
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET 124 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~ 124 (181)
++.|+ +.||++|+...+.|.++. +.++-|. .|...+++++|++.
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~~-------~~~~~vd-------------------------~~~~~~l~~~~~v~--- 45 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANVE-------YTYVDVD-------------------------TDEGVELTAKHHIR--- 45 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHHh-------heEEeee-------------------------CCCCHHHHHHcCCc---
Confidence 45666 999999998777765431 1111111 23456788899987
Q ss_pred CcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 125 GVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 125 g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
..|+.+ +|+.+....+ ...+..++.+.|
T Consensus 46 --~~PT~~----~g~~~~~~~G---~~~~~~~l~~~~ 73 (75)
T PHA02125 46 --SLPTLV----NTSTLDRFTG---VPRNVAELKEKL 73 (75)
T ss_pred --eeCeEE----CCEEEEEEeC---CCCcHHHHHHHh
Confidence 566654 5777666632 234456665544
No 146
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.72 E-value=0.00025 Score=45.70 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=36.7
Q ss_pred CCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKL 90 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~ 90 (181)
.-.||+++|+|+ +.||+.|...-..+ .++.+.+. +++..+-|..+..+...
T Consensus 14 ~~~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~ 67 (82)
T PF13899_consen 14 KKEGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNA 67 (82)
T ss_dssp HHHTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHH
T ss_pred HHcCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhH
Confidence 335899999997 99999998877666 33333344 57888888887765544
No 147
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.70 E-value=0.00023 Score=59.90 Aligned_cols=90 Identities=9% Similarity=0.110 Sum_probs=62.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
.++.++|.|| +.||+.|....|.+.++.+.++.. ++.+..|..+..+ +..
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--------------------------~~~- 414 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--------------------------VPP- 414 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--------------------------cCC-
Confidence 3678888888 999999999999999999999873 5777777664310 111
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEE-EEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQ-HITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~-~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
|++. ..|+.++..+.++.. ..+.+ ....+++++.|++...
T Consensus 415 ~~i~-----~~Pt~~~~~~~~~~~~~~~~g----~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 415 FEVE-----GFPTIKFVPAGKKSEPVPYDG----DRTLEDFSKFIAKHAT 455 (462)
T ss_pred CCcc-----ccCEEEEEeCCCCcCceEecC----cCCHHHHHHHHHhcCC
Confidence 4444 467999997665531 22211 3567889988876654
No 148
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.68 E-value=0.00031 Score=46.86 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=35.0
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
|+++++.|+ +.||+.|....+.+.++.++++.+ +.++-|..+.
T Consensus 12 ~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~ 54 (103)
T cd02982 12 GKPLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD 54 (103)
T ss_pred CCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh
Confidence 688888887 889999999999999999999843 6666665554
No 149
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.61 E-value=0.00017 Score=47.89 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=39.9
Q ss_pred ecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 35 TESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 35 ~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
.....+++++++.|| +.||+.|...++.+.++.+++.. .+.++.|...
T Consensus 26 ~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 333444788889888 99999999999999999999986 6788888885
No 150
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.52 E-value=0.00012 Score=51.55 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=43.7
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
+.+..+..+++|. .+|||.|...+|.|.++.+... ++.+=.|+.|. ..+.+.++ +.
T Consensus 37 ~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~---~~el~~~~-----------------lt- 92 (129)
T PF14595_consen 37 KSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDE---NKELMDQY-----------------LT- 92 (129)
T ss_dssp HT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHH---HHHHTTTT-----------------TT-
T ss_pred HhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecC---ChhHHHHH-----------------Hh-
Confidence 3444455666665 8999999999999999998754 45555555543 22323222 00
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
.| +...|+.+++|.+|+++.++
T Consensus 93 -~g-----~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 93 -NG-----GRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp --S-----S--SSEEEEE-TT--EEEEE
T ss_pred -CC-----CeecCEEEEEcCCCCEeEEE
Confidence 22 23578999999999999998
No 151
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.34 E-value=0.0039 Score=47.59 Aligned_cols=81 Identities=11% Similarity=0.001 Sum_probs=45.8
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+++.|..|++.||++|+...+.++++..+. .++.+.-|..+. +.++++.|++.
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~--~~i~~~~vD~~~-------------------------~~~~~~~~~V~ 185 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAN--DKILGEMIEANE-------------------------NPDLAEKYGVM 185 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhc--CceEEEEEeCCC-------------------------CHHHHHHhCCc
Confidence 455555444999999987666665554432 234444333332 34566778886
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
..|++++. .+|+. +. +. ...+++.+.|.
T Consensus 186 -----~vPtl~i~-~~~~~---~~-G~---~~~~~l~~~l~ 213 (215)
T TIGR02187 186 -----SVPKIVIN-KGVEE---FV-GA---YPEEQFLEYIL 213 (215)
T ss_pred -----cCCEEEEe-cCCEE---EE-CC---CCHHHHHHHHH
Confidence 56676654 56763 32 22 23456666554
No 152
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=97.14 E-value=0.002 Score=44.66 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=70.9
Q ss_pred cCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 36 ESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 36 l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
|+++++| .+||+|=++.--+.-..++..|.+....+.++++.++.|..+...... .++-...-..+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~-------------~~~~~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG-------------KPLSPEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc-------------CcCCHHHHHHH
Confidence 5566664 577777444444445567777877778889999999988665432211 11111112566
Q ss_pred HHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 115 IDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 115 ~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
.+.|++. . ...+.+||++||.+..++. .+ -+.+++.+.|.++.
T Consensus 70 r~~l~~~-~---~~f~~vLiGKDG~vK~r~~--~p--~~~~~lf~~ID~MP 112 (118)
T PF13778_consen 70 RKRLRIP-P---GGFTVVLIGKDGGVKLRWP--EP--IDPEELFDTIDAMP 112 (118)
T ss_pred HHHhCCC-C---CceEEEEEeCCCcEEEecC--CC--CCHHHHHHHHhCCc
Confidence 6777764 1 1247899999999998872 22 47899999998765
No 153
>KOG0190|consensus
Probab=96.97 E-value=0.0032 Score=53.57 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=62.1
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
..+++-|| +.||..|....|.+.+..+.+.+.+-.+-..-+|..+ +..++.+|++.
T Consensus 43 ~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~-----------------------~~~~~~~y~v~ 98 (493)
T KOG0190|consen 43 EFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE-----------------------ESDLASKYEVR 98 (493)
T ss_pred ceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch-----------------------hhhhHhhhcCC
Confidence 45667777 9999999999999999999998874333333334322 24666778886
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
|+ |+.-+. +||+....+ +-.+..+.|+..+++-.
T Consensus 99 ---gy--PTlkiF-rnG~~~~~Y----~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 99 ---GY--PTLKIF-RNGRSAQDY----NGPREADGIVKWLKKQS 132 (493)
T ss_pred ---CC--CeEEEE-ecCCcceec----cCcccHHHHHHHHHhcc
Confidence 54 465555 799983333 22478899999987654
No 154
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=96.80 E-value=0.0004 Score=38.59 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=14.1
Q ss_pred cCCccccCCCCCCCCC
Q psy2878 166 TGKLCACNRTLNGKTL 181 (181)
Q Consensus 166 ~~~~~~~~~~~~~~~~ 181 (181)
.+..||+||.+|+++|
T Consensus 8 ~~v~tPanW~pGd~~i 23 (40)
T PF10417_consen 8 HGVATPANWKPGDDVI 23 (40)
T ss_dssp HSSBBCTTTCTTSGEB
T ss_pred hCcccCcCCCCCCCeE
Confidence 4689999999999976
No 155
>KOG0908|consensus
Probab=96.63 E-value=0.0023 Score=49.55 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=36.2
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
+...+|.++|.|. +.||.+|....|.+..+..+|. +..++=|.+|
T Consensus 17 s~ag~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd 61 (288)
T KOG0908|consen 17 SAAGGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVD 61 (288)
T ss_pred hccCceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHH
Confidence 3334689999998 8899999999999999999995 5666666554
No 156
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.62 E-value=0.0094 Score=41.13 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=59.1
Q ss_pred ecCCCCCCeEEEEEeeCC----CCCCChhHH--HHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEE
Q psy2878 35 TESSFPGKWKIFYFYPKD----FTFVCPTEI--SEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 35 ~l~~~~gk~~ll~F~~~~----~cp~C~~~~--~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
..+.-.+|.++|+++ +. ||..|+..+ +.+.+. + +.++.+++.++...+.
T Consensus 11 ~~ak~e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~---l-n~~fv~w~~dv~~~eg-------------------- 65 (116)
T cd02991 11 NDAKQELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEY---I-NTRMLFWACSVAKPEG-------------------- 65 (116)
T ss_pred HHHHhhCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHH---H-HcCEEEEEEecCChHH--------------------
Confidence 334446799999998 55 667775544 233333 2 3467777777766541
Q ss_pred cCCchHHHHhCCCCCCCcceeeEEEE---cCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 109 DTNGSLIDQLGIRHETGVALRATFIF---DPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 109 D~~~~~~~~~gv~~~~g~~~p~~~li---D~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
.+++..+++. ..|+..+| +.+..++.+..+. ...++++..|+...
T Consensus 66 ---~~la~~l~~~-----~~P~~~~l~~~~~~~~vv~~i~G~----~~~~~ll~~L~~~~ 113 (116)
T cd02991 66 ---YRVSQALRER-----TYPFLAMIMLKDNRMTIVGRLEGL----IQPEDLINRLTFIM 113 (116)
T ss_pred ---HHHHHHhCCC-----CCCEEEEEEecCCceEEEEEEeCC----CCHHHHHHHHHHHH
Confidence 4677778876 56788888 6666677776433 35677777776543
No 157
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.48 E-value=0.016 Score=45.37 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=21.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVK 69 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~ 69 (181)
.+|++|.+|. -..||+|+.....+.++.+
T Consensus 116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHhh
Confidence 4577777776 6679999988888776554
No 158
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.32 E-value=0.071 Score=37.62 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=32.8
Q ss_pred CchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 111 NGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 111 ~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+.+++.+||+. ..|+.+++ ++|+++....+. ..-+++++.|+++.
T Consensus 80 ~~~LA~~fgV~-----siPTLl~F-kdGk~v~~i~G~----~~k~~l~~~I~~~L 124 (132)
T PRK11509 80 SEAIGDRFGVF-----RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGLV 124 (132)
T ss_pred CHHHHHHcCCc-----cCCEEEEE-ECCEEEEEEeCc----CCHHHHHHHHHHHh
Confidence 46788899997 67788888 699999888532 33466777776554
No 159
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.071 Score=38.61 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=63.7
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
-.+|++++.|= +..|+.|...-..+ .++++.+.. .+.++-+.......+.- .. +-. .-.-...+++
T Consensus 40 ~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f-~~------g~k--ee~~s~~ELa 108 (182)
T COG2143 40 PNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLF-KV------GDK--EEKMSTEELA 108 (182)
T ss_pred ccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEe-ec------Cce--eeeecHHHHH
Confidence 46789988886 67799996654443 445555544 45555555433221111 11 101 1111236999
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+-|+|. ++|+.++.|++|+-++... +.-+ .++.+..++-..
T Consensus 109 ~kf~vr-----stPtfvFfdk~Gk~Il~lP-GY~p---pe~Fl~vlkYVa 149 (182)
T COG2143 109 QKFAVR-----STPTFVFFDKTGKTILELP-GYMP---PEQFLAVLKYVA 149 (182)
T ss_pred HHhccc-----cCceEEEEcCCCCEEEecC-CCCC---HHHHHHHHHHHH
Confidence 999998 8899999999999988773 2222 345555554443
No 160
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.89 E-value=0.016 Score=50.00 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=56.5
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHH-HHHHHHHHHhcCcEEEEEe--cCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISE-YNKLVKDFNERNAILLGGS--SDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~-l~~l~~~~~~~~~~vi~Is--~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
-++|+++|.|+ ++||-.|+..-+. +.+-+..++-.|+..+=+. .++++ ..+..
T Consensus 472 ~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~-~~~lL---------------------- 527 (569)
T COG4232 472 AKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPA-ITALL---------------------- 527 (569)
T ss_pred CCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHH-HHHHH----------------------
Confidence 35569999999 9999999765444 4455555555666665443 33332 23333
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
++||+. ..|++++++++|.-.-.. +-.-+.+.+++.++..
T Consensus 528 k~~~~~-----G~P~~~ff~~~g~e~~~l----~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 528 KRLGVF-----GVPTYLFFGPQGSEPEIL----TGFLTADAFLEHLERA 567 (569)
T ss_pred HHcCCC-----CCCEEEEECCCCCcCcCC----cceecHHHHHHHHHHh
Confidence 345554 346889999888865442 1122456666666543
No 161
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.86 E-value=0.051 Score=33.16 Aligned_cols=32 Identities=6% Similarity=0.089 Sum_probs=22.4
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.+|.+.|||.|....+.|. +.++.+.-+..+.
T Consensus 3 ~lf~~~~C~~C~~~~~~l~-------~~~i~~~~vdi~~ 34 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKEYLT-------SKGIAFEEIDVEK 34 (74)
T ss_pred EEEcCCCChhHHHHHHHHH-------HCCCeEEEEeccC
Confidence 3455899999987665543 3578887777765
No 162
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.60 E-value=0.053 Score=39.67 Aligned_cols=105 Identities=10% Similarity=-0.001 Sum_probs=46.3
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHH-H--HHHHHHHHhcCcEEEEEecCC--HHHHHHHHHHcCCCcccceeEEE
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISE-Y--NKLVKDFNERNAILLGGSSDN--EFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~-l--~~l~~~~~~~~~~vi~Is~d~--~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
+..+.-.+|+++|.+. ..||.-|..+... + .++.+.+. + .+|.|-+|. ..++......+
T Consensus 30 ~~~Ak~e~KpIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN-~--~FI~VkvDree~Pdid~~y~~~------------ 93 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIG-YSWCHWCHVMERESFSDPEVAEYLN-R--NFIPVKVDREERPDIDKIYMNA------------ 93 (163)
T ss_dssp HHHHHHHT--EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHH-H--H-EEEEEETTT-HHHHHHHHHH------------
T ss_pred HHHHHhcCCcEEEEEE-ecCCcchhhhcccCcCCHHHHHHHh-C--CEEEEEeccccCccHHHHHHHH------------
Confidence 4444446788888887 7799999755432 2 11222222 2 244444432 11221111110
Q ss_pred cCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC----CCCHHHHHHHHHhh
Q psy2878 109 DTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV----GRNPIETLRILDAI 164 (181)
Q Consensus 109 D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~----~~~~~~ll~~l~~l 164 (181)
.....|.. .+|.+++++|+|+..+...|-.+. .....++++.|.++
T Consensus 94 -----~~~~~~~g-----GwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 94 -----VQAMSGSG-----GWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp -----HHHHHS--------SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHH
T ss_pred -----HHHhcCCC-----CCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHH
Confidence 00111322 477999999999999988653322 12455666655544
No 163
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.60 E-value=0.047 Score=33.94 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=20.8
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
..|+ +.|||.|+...+.|.+ .++.+-.|..+..
T Consensus 3 ~ly~-~~~C~~C~~~~~~L~~-------~~~~~~~idi~~~ 35 (77)
T TIGR02200 3 TVYG-TTWCGYCAQLMRTLDK-------LGAAYEWVDIEED 35 (77)
T ss_pred EEEE-CCCChhHHHHHHHHHH-------cCCceEEEeCcCC
Confidence 3444 8899999976665543 3555555665543
No 164
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.57 E-value=0.091 Score=35.55 Aligned_cols=77 Identities=6% Similarity=0.074 Sum_probs=47.0
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
.++++|+=+ ++.||....-+.+|.+.++...+. +.++-|-+-....+ ...++..|||
T Consensus 19 ~~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R~v---------------------Sn~IAe~~~V 75 (105)
T PF11009_consen 19 EKPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYRPV---------------------SNAIAEDFGV 75 (105)
T ss_dssp -SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHH---------------------HHHHHHHHT-
T ss_pred cCcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCchh---------------------HHHHHHHhCC
Confidence 466666555 667887777777777777666554 77777766543222 3578888998
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
.. ..|..+|| ++|++++.-.
T Consensus 76 ~H----eSPQ~ili-~~g~~v~~aS 95 (105)
T PF11009_consen 76 KH----ESPQVILI-KNGKVVWHAS 95 (105)
T ss_dssp -------SSEEEEE-ETTEEEEEEE
T ss_pred Cc----CCCcEEEE-ECCEEEEECc
Confidence 71 15899999 5999998875
No 165
>KOG0190|consensus
Probab=95.49 E-value=0.018 Score=49.06 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=35.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.+|-+||-|| +.||.+|....|.+++|.+.|++. -.++..-+|.
T Consensus 383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~-~~vviAKmDa 426 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD-ENVVIAKMDA 426 (493)
T ss_pred cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC-CCcEEEEecc
Confidence 4688999999 999999999999999999999984 2444444443
No 166
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.46 E-value=0.028 Score=38.99 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=45.4
Q ss_pred CCCeEEEEEeeC------CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 40 PGKWKIFYFYPK------DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 40 ~gk~~ll~F~~~------~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
.|+++.|+|+.+ +|||.|....|.+.+...... .+..+|-|.+.+. ..|... +.+ .+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r---~~Wkdp-------~n~------fR 80 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDR---PEWKDP-------NNP------FR 80 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---H---HHHC-T-------TSH------HH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCH---HHhCCC-------CCC------ce
Confidence 467888888744 699999999999999887743 4788888887754 244321 111 12
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcE
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNII 140 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i 140 (181)
....+.+. ..|+.+-.+..+++
T Consensus 81 ~~p~~~l~-----~IPTLi~~~~~~rL 102 (119)
T PF06110_consen 81 TDPDLKLK-----GIPTLIRWETGERL 102 (119)
T ss_dssp H--CC--------SSSEEEECTSS-EE
T ss_pred Ecceeeee-----ecceEEEECCCCcc
Confidence 22245554 45688888766553
No 167
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.21 E-value=0.35 Score=30.37 Aligned_cols=69 Identities=9% Similarity=0.119 Sum_probs=38.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceee
Q psy2878 51 KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRA 130 (181)
Q Consensus 51 ~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~ 130 (181)
+..||.|......++++..++ ++.+=.+..... .++ ..||+. ..|+
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~-------------------------~~~-~~ygv~-----~vPa 52 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDF-------------------------EEI-EKYGVM-----SVPA 52 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTH-------------------------HHH-HHTT-S-----SSSE
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCH-------------------------HHH-HHcCCC-----CCCE
Confidence 666999997777776666555 344422222211 122 568887 6677
Q ss_pred EEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 131 TFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 131 ~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
. +| ||++++.. . ....+++.++|
T Consensus 53 l-vI--ng~~~~~G--~---~p~~~el~~~l 75 (76)
T PF13192_consen 53 L-VI--NGKVVFVG--R---VPSKEELKELL 75 (76)
T ss_dssp E-EE--TTEEEEES--S-----HHHHHHHHH
T ss_pred E-EE--CCEEEEEe--c---CCCHHHHHHHh
Confidence 7 66 48887555 1 13445555554
No 168
>KOG0191|consensus
Probab=95.01 E-value=0.26 Score=40.93 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=27.6
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE 73 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~ 73 (181)
+++.++.|| +.||..|....+.+.++...++.
T Consensus 47 ~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~ 78 (383)
T KOG0191|consen 47 DSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG 78 (383)
T ss_pred CCceEEEEE-CCCCcchhhhchHHHHHHHHhcC
Confidence 467888888 88999999999999988888875
No 169
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.97 E-value=0.1 Score=32.98 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=23.9
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+.|+ +.|||.|....+.|.++. .. ..+.++-|+.+.
T Consensus 2 ~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~ 37 (84)
T TIGR02180 2 VVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLS 37 (84)
T ss_pred EEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCC
Confidence 3444 899999998887777765 11 126677776653
No 170
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.62 E-value=0.6 Score=36.16 Aligned_cols=36 Identities=11% Similarity=-0.072 Sum_probs=25.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
.|+.+|+.|. -..||+|+...+.+.++. +.++.+.-
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~----~~~v~v~~ 141 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDYN----ALGITVRY 141 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHh----cCCeEEEE
Confidence 4677777776 667999998887776553 34565544
No 171
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=94.44 E-value=0.27 Score=33.89 Aligned_cols=95 Identities=11% Similarity=0.091 Sum_probs=53.3
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.+.+||-|+ ++| |.|.. .+...++..++.+.. +.+--|..++.... .+.+++.+|
T Consensus 18 ~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~--------------------~~~~L~~~y 74 (116)
T cd03007 18 FKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEK--------------------LNMELGERY 74 (116)
T ss_pred CCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccch--------------------hhHHHHHHh
Confidence 467888887 855 55554 577888888886643 33333333321100 124688888
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
||... | .|+.+++. +|.-.....+. ..++..+.|++.|.+
T Consensus 75 ~I~~~-g--yPTl~lF~-~g~~~~~~~Y~-G~~r~~~~lv~~v~~ 114 (116)
T cd03007 75 KLDKE-S--YPVIYLFH-GGDFENPVPYS-GADVTVDALQRFLKG 114 (116)
T ss_pred CCCcC-C--CCEEEEEe-CCCcCCCccCC-CCcccHHHHHHHHHh
Confidence 87411 3 46888885 55311001112 123788999888865
No 172
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.23 E-value=0.15 Score=32.31 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=23.1
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
|...|||.|......|. +.|+.+.-+..+......+
T Consensus 13 y~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~ 48 (79)
T TIGR02190 13 FTKPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRS 48 (79)
T ss_pred EECCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHH
Confidence 34889999986654443 4577777777765433333
No 173
>KOG3425|consensus
Probab=94.23 E-value=0.12 Score=35.74 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=35.5
Q ss_pred CCC-CCCeEEEEEeeC-------CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 37 SSF-PGKWKIFYFYPK-------DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 37 ~~~-~gk~~ll~F~~~-------~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+++ +|+.+.+.|..+ +|||.|..-.|-+.+..+.+. .++.+|-+-+.+
T Consensus 20 ~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 20 KNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGN 75 (128)
T ss_pred HHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecC
Confidence 344 567788888755 499999999999888877444 367777777665
No 174
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.01 E-value=0.29 Score=29.64 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=20.3
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+|...|||.|......|. +.++.+..+..+.
T Consensus 4 l~~~~~c~~c~~~~~~l~-------~~~i~~~~~~i~~ 34 (73)
T cd02976 4 VYTKPDCPYCKATKRFLD-------ERGIPFEEVDVDE 34 (73)
T ss_pred EEeCCCChhHHHHHHHHH-------HCCCCeEEEeCCC
Confidence 344889999986544333 3467777777665
No 175
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.85 E-value=0.32 Score=29.21 Aligned_cols=39 Identities=5% Similarity=-0.169 Sum_probs=23.4
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
|...|||.|+.....|.+ .++.+.-+..+......++..
T Consensus 5 y~~~~Cp~C~~~~~~L~~-------~~i~~~~~di~~~~~~~~~l~ 43 (72)
T cd02066 5 FSKSTCPYCKRAKRLLES-------LGIEFEEIDILEDGELREELK 43 (72)
T ss_pred EECCCCHHHHHHHHHHHH-------cCCcEEEEECCCCHHHHHHHH
Confidence 348899999866554443 356666666655443444333
No 176
>KOG0912|consensus
Probab=93.81 E-value=0.3 Score=39.26 Aligned_cols=90 Identities=12% Similarity=0.201 Sum_probs=54.1
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
..++|.|+ +.||+..+...|.+.+..+.++++- -++|--.+| +|.+..++..|.
T Consensus 14 elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VD-----------------------cd~e~~ia~ky~ 69 (375)
T KOG0912|consen 14 ELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVD-----------------------CDKEDDIADKYH 69 (375)
T ss_pred eEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcc-----------------------cchhhHHhhhhc
Confidence 46777777 9999999999999998888887641 223222233 222345666666
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. -.|+.=|+ .+|.+..+- ....+.++.+.+-|++.
T Consensus 70 I~-----KyPTlKvf-rnG~~~~rE---YRg~RsVeaL~efi~kq 105 (375)
T KOG0912|consen 70 IN-----KYPTLKVF-RNGEMMKRE---YRGQRSVEALIEFIEKQ 105 (375)
T ss_pred cc-----cCceeeee-eccchhhhh---hccchhHHHHHHHHHHH
Confidence 64 34555555 467665433 12235666666666543
No 177
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.55 E-value=0.27 Score=36.83 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=22.8
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHH
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNK 66 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~ 66 (181)
+.+..-.+++.+++|+ ...||+|....+.+.+
T Consensus 70 i~~g~~~~~~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 70 IVYGKGNGKRVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred eEEcCCCCCEEEEEEE-CCCCccHHHHHHHHhh
Confidence 4443334677777776 6789999988887766
No 178
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=93.12 E-value=0.34 Score=28.76 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=25.9
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHH
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRE 95 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~ 95 (181)
.|...+||.|...... +++.|+.+-.+..+.....++...+
T Consensus 3 vy~~~~C~~C~~~~~~-------L~~~~i~y~~~dv~~~~~~~~~l~~ 43 (60)
T PF00462_consen 3 VYTKPGCPYCKKAKEF-------LDEKGIPYEEVDVDEDEEAREELKE 43 (60)
T ss_dssp EEESTTSHHHHHHHHH-------HHHTTBEEEEEEGGGSHHHHHHHHH
T ss_pred EEEcCCCcCHHHHHHH-------HHHcCCeeeEcccccchhHHHHHHH
Confidence 3447899999754433 4666888888887765444443443
No 179
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.07 E-value=0.34 Score=31.01 Aligned_cols=37 Identities=8% Similarity=-0.085 Sum_probs=26.5
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
..|...|||.|..-...|.++..++ .++.+.-|..+.
T Consensus 4 ~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 4 VIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 3345889999998888888877654 366666666653
No 180
>KOG0191|consensus
Probab=93.04 E-value=0.56 Score=38.97 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=33.3
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCcEEEEEecC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNAILLGGSSD 84 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~~vi~Is~d 84 (181)
+..++.|| +.||++|...++.+.++...+.. .++.+..+..+
T Consensus 163 ~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 163 ADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred cceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 34666665 99999999999999999998874 56777777666
No 181
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.04 E-value=1 Score=39.39 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=45.7
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+++-|-.|.+.+||.|+.....++++..+.. ++..-.|..... .+++..|+++
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~-------------------------~~~~~~~~v~ 528 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHF-------------------------PDLKDEYGIM 528 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECccc-------------------------HHHHHhCCce
Confidence 4555555558999999876666665554433 344444433321 3555677776
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
+.|+++| ||++++.. . ...+++++.|
T Consensus 529 -----~vP~~~i---~~~~~~~G--~----~~~~~~~~~~ 554 (555)
T TIGR03143 529 -----SVPAIVV---DDQQVYFG--K----KTIEEMLELI 554 (555)
T ss_pred -----ecCEEEE---CCEEEEee--C----CCHHHHHHhh
Confidence 6677665 46665433 1 2556666654
No 182
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.89 E-value=0.61 Score=30.90 Aligned_cols=47 Identities=2% Similarity=-0.207 Sum_probs=25.2
Q ss_pred CCeEEEEEee---CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 41 GKWKIFYFYP---KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 41 gk~~ll~F~~---~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
.+.++|+--. .+|||.|...... +.+.|+.+.-+..+.....++.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~l-------L~~~~i~~~~~di~~~~~~~~~l~ 60 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQI-------LKACGVPFAYVNVLEDPEIRQGIK 60 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHH-------HHHcCCCEEEEECCCCHHHHHHHH
Confidence 3456666432 2689999754433 344466666666644333333333
No 183
>PHA03050 glutaredoxin; Provisional
Probab=92.78 E-value=0.48 Score=32.16 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=10.7
Q ss_pred CCCCCCChhHHHHHH
Q psy2878 51 KDFTFVCPTEISEYN 65 (181)
Q Consensus 51 ~~~cp~C~~~~~~l~ 65 (181)
.+|||+|..-...|.
T Consensus 20 ~~~CPyC~~ak~~L~ 34 (108)
T PHA03050 20 KFTCPFCRNALDILN 34 (108)
T ss_pred CCCChHHHHHHHHHH
Confidence 889999975554443
No 184
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=92.70 E-value=0.16 Score=35.75 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=28.1
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
++.+|+.|+ ..+||.|....+.+.++..++.+..+.+..+
T Consensus 5 a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFF-DYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCEEEEEEE-CCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 466766666 7789999999999988877665323343333
No 185
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.55 E-value=0.7 Score=28.55 Aligned_cols=29 Identities=10% Similarity=-0.121 Sum_probs=19.4
Q ss_pred eCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 50 PKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 50 ~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
...+||.|......|. +.|+.+--+..+.
T Consensus 7 ~~~~C~~C~ka~~~L~-------~~gi~~~~~di~~ 35 (73)
T cd03027 7 SRLGCEDCTAVRLFLR-------EKGLPYVEINIDI 35 (73)
T ss_pred ecCCChhHHHHHHHHH-------HCCCceEEEECCC
Confidence 3678999985554443 4677777777664
No 186
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.51 E-value=0.47 Score=29.25 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=20.1
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
|...+||.|......|. +.|+.+.-+..+..
T Consensus 6 ys~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~ 36 (72)
T cd03029 6 FTKPGCPFCARAKAALQ-------ENGISYEEIPLGKD 36 (72)
T ss_pred EECCCCHHHHHHHHHHH-------HcCCCcEEEECCCC
Confidence 34789999986654443 45677666666543
No 187
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.00 E-value=0.36 Score=34.45 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=34.9
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHH-HhcCcEEEEEec
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDF-NERNAILLGGSS 83 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~-~~~~~~vi~Is~ 83 (181)
+.+.+-.++++|+.|+ ...||.|....+.+.++.+++ ....+.++....
T Consensus 5 ~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 4455556677777776 667999999999999999998 233577776654
No 188
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.88 E-value=0.54 Score=29.08 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=21.8
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHH
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEF 87 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~ 87 (181)
+|...+||.|......|. +.|+.+-.+..+...
T Consensus 3 ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~~ 35 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQP 35 (72)
T ss_pred EEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCCH
Confidence 455788999986655454 457777667666433
No 189
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=91.87 E-value=0.53 Score=29.52 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=20.9
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.+|...|||.|......|.++.. ...++=|..+.
T Consensus 3 ~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 3 VVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 34458899999876655555433 34555555554
No 190
>PRK10329 glutaredoxin-like protein; Provisional
Probab=91.57 E-value=1 Score=28.75 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=21.5
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
.|...+||.|......| .++|+.+--|..+..
T Consensus 5 lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~ 36 (81)
T PRK10329 5 IYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRV 36 (81)
T ss_pred EEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCC
Confidence 44578999997544333 456888777777643
No 191
>PRK10638 glutaredoxin 3; Provisional
Probab=91.54 E-value=0.95 Score=28.79 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=20.3
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
+|...+||.|......|. ++++..--+..+..
T Consensus 6 ly~~~~Cp~C~~a~~~L~-------~~gi~y~~~dv~~~ 37 (83)
T PRK10638 6 IYTKATCPFCHRAKALLN-------SKGVSFQEIPIDGD 37 (83)
T ss_pred EEECCCChhHHHHHHHHH-------HcCCCcEEEECCCC
Confidence 444789999985554443 45666666666543
No 192
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=91.51 E-value=1.1 Score=27.63 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=20.1
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.|...+||.|......|+ +.|+.+--+..+.
T Consensus 4 ly~~~~Cp~C~~ak~~L~-------~~~i~~~~i~i~~ 34 (75)
T cd03418 4 IYTKPNCPYCVRAKALLD-------KKGVDYEEIDVDG 34 (75)
T ss_pred EEeCCCChHHHHHHHHHH-------HCCCcEEEEECCC
Confidence 444789999986554443 3567666666654
No 193
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=91.34 E-value=4.4 Score=29.65 Aligned_cols=121 Identities=14% Similarity=0.192 Sum_probs=69.6
Q ss_pred CccCCCcEEecccCCCCCCCCCcccceeeeecCCC---CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-------
Q psy2878 5 GQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF---PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER------- 74 (181)
Q Consensus 5 G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~---~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~------- 74 (181)
|..+|++.+.- =.+| +++.|.+. .|++-|++|= + -..+..+...|.++.+.+...
T Consensus 1 G~R~~~a~V~r--------~aD~----~p~~L~~~~~adGrfrI~vFa-g--d~~~~~~~~~l~~~~~~L~~~~~~~~~~ 65 (167)
T cd02979 1 GRRFPSAPVVR--------QADA----LPVHLGHRLPADGRFRIYVFA-G--DIAPAQQKSRLTQLCDALDSPDSFPLRY 65 (167)
T ss_pred CCcCCCceEEE--------ecCC----CCHhHhhhccCCCCEEEEEEc-C--CCCchhHHHHHHHHHHHHcCCcchHhhc
Confidence 56777777762 1466 77777553 5888888874 2 233355666777777666432
Q ss_pred ---------CcEEEEEecCCHHH-----HHHHHHHcCCCcccc-eeEEEcCC------chHHHHhCCCCCCCcceeeEEE
Q psy2878 75 ---------NAILLGGSSDNEFV-----KLAWRRENSNLYKLN-HWQFSDTN------GSLIDQLGIRHETGVALRATFI 133 (181)
Q Consensus 75 ---------~~~vi~Is~d~~~~-----~~~~~~~~~~~~~~~-~~~~~D~~------~~~~~~~gv~~~~g~~~p~~~l 133 (181)
-++++.|......+ +.+.........+.. +.++.|.. +...+.||+... ..+.+|
T Consensus 66 ~~~~~~~~~~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~~~----~g~vvv 141 (167)
T cd02979 66 TPRGADPDSVFDVVTIHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDPE----RGAVVV 141 (167)
T ss_pred CCCCCCCCCcEEEEEEecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCCCC----CCCEEE
Confidence 15677776543221 112221110111223 33566643 568888887511 346889
Q ss_pred EcCCCcEEEEE
Q psy2878 134 FDPQNIIQHIT 144 (181)
Q Consensus 134 iD~~g~i~~~~ 144 (181)
+-|||.|-+..
T Consensus 142 vRPDgyVg~~~ 152 (167)
T cd02979 142 VRPDQYVALVG 152 (167)
T ss_pred ECCCCeEEEEe
Confidence 99999887665
No 194
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=90.86 E-value=0.79 Score=28.69 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=19.2
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.|...+||.|......|+ +.|+.+--+..+.
T Consensus 3 ly~~~~Cp~C~~a~~~L~-------~~~i~~~~~di~~ 33 (79)
T TIGR02181 3 IYTKPYCPYCTRAKALLS-------SKGVTFTEIRVDG 33 (79)
T ss_pred EEecCCChhHHHHHHHHH-------HcCCCcEEEEecC
Confidence 455889999986554444 3455555555543
No 195
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=90.76 E-value=2 Score=28.98 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCC
Q psy2878 60 EISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQN 138 (181)
Q Consensus 60 ~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g 138 (181)
...=|++..+++++.+..-+.|++++.+.+.+ .++. -...++......++++++|+. ++| ++|..+|
T Consensus 36 S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~-Lr~l----apgl~l~P~sgddLa~rL~l~-----hYP--vLit~tg 102 (105)
T TIGR03765 36 SRQWLQQNAAALKSLGAVGLVVNVETAAALQR-LRAL----APGLPLLPVSGDDLAERLGLR-----HYP--VLITATG 102 (105)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHH-HHHH----cCCCcccCCCHHHHHHHhCCC-----ccc--EEEecCc
Confidence 34446778888888888889999999888877 4443 456677777778999999986 544 6777776
No 196
>PRK06184 hypothetical protein; Provisional
Probab=90.62 E-value=3.5 Score=35.40 Aligned_cols=108 Identities=10% Similarity=0.143 Sum_probs=68.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-C-CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-P-GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~-gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
+.+|..+|+..+. ..+| +++++-|+ . ++++||.|-...+ . . ....++.++
T Consensus 386 ~~~G~r~p~~~~~---------~~~~----~~~~l~d~~~~~~~~ll~~~~~~~--~------~-------~~~~~~~~~ 437 (502)
T PRK06184 386 LRAGDRAPDAPLL---------GAAG----QPTRLFDLFRGPHWTLLAFGAGAA--A------I-------LARRGLRIH 437 (502)
T ss_pred CCCcCCCCCchhc---------cCCC----ceeeHHHhhCCCcEEEEEecCCch--h------h-------hhhcCceEE
Confidence 4578888988776 4455 66666554 3 4788887632111 0 0 112356666
Q ss_pred EEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 80 GGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
.|.... ....+.|.++.++..|++. ....+||-|||.|.++.. . ...+.+.+
T Consensus 438 ~~~~~~-----------------~~~~~~d~~g~~~~~~~~~------~~~~~lvRPDg~v~~~~~-~----~~~~~~~~ 489 (502)
T PRK06184 438 RVGDAA-----------------EGGDLVDDAGHFRDAYGLT------GGTLVLVRPDGYVGLIAA-G----DDAAALEA 489 (502)
T ss_pred EecccC-----------------CCCceeCCCccHHHHhcCC------CCcEEEECCCcceEEEec-C----CCHHHHHH
Confidence 554321 1123688899999999974 346899999999988752 1 36677777
Q ss_pred HHHhhc
Q psy2878 160 ILDAIQ 165 (181)
Q Consensus 160 ~l~~l~ 165 (181)
.++.+.
T Consensus 490 ~l~~~~ 495 (502)
T PRK06184 490 YLARVG 495 (502)
T ss_pred HHHHhc
Confidence 776654
No 197
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=1.4 Score=28.09 Aligned_cols=41 Identities=10% Similarity=-0.030 Sum_probs=24.0
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC--CHHHHHHHHHHc
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD--NEFVKLAWRREN 96 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d--~~~~~~~~~~~~ 96 (181)
|...+||+|......|. +.|+.+.-|..+ ..+..++++++.
T Consensus 6 yt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~ 48 (80)
T COG0695 6 YTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRG 48 (80)
T ss_pred EECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHh
Confidence 34667999976554443 556655555544 443555666653
No 198
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=90.03 E-value=0.65 Score=29.93 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=22.0
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
..|...|||.|......|.++..+.. ++.+.-+..+
T Consensus 3 ~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 3 VIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 34558899999877766665543322 4555555554
No 199
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=89.94 E-value=1.2 Score=32.24 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=76.3
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccce--eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHH-HHHHhcCcE-
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAF--KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLV-KDFNERNAI- 77 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~--~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~-~~~~~~~~~- 77 (181)
++.|.++|...+...+.- ..+| +.+ +++.-+++.||.-||.-..+. ...-....+.+..+- ..|....-+
T Consensus 23 lq~~q~vp~VgV~~~GEl----~l~~-~~~~y~~W~SAqL~GKvRV~~hiAGR-tsaKE~Na~lieaIk~a~fp~~~YQT 96 (184)
T COG3054 23 LQLGQRVPPVGVADRGEL----VLDK-DQFSYKTWNSAQLVGKVRVLQHIAGR-TSAKEKNATLIEAIKSAKFPHDRYQT 96 (184)
T ss_pred cccCCcCCCccccccceE----EecC-cceeecccchhhccchhhhhhhhhcc-cchhhhchHHHHHHHhccCChHHcee
Confidence 567888888776632211 1233 111 345557788997666666332 211111122222221 122222221
Q ss_pred EEEEecCCHH-HHHHHHHHc--CCCccccee-EEEcCCchHHH-HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCC
Q psy2878 78 LLGGSSDNEF-VKLAWRREN--SNLYKLNHW-QFSDTNGSLID-QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGR 152 (181)
Q Consensus 78 vi~Is~d~~~-~~~~~~~~~--~~~~~~~~~-~~~D~~~~~~~-~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~ 152 (181)
--.|+.|+.- -.-.|.+.- .....++|. ++.|.++ +++ ++++..+ ..+++++|++|+|.+... +.-...
T Consensus 97 TTIiN~DDAi~GtgmFVkssae~~Kke~pwSq~vlD~~g-vak~AWqL~e~----~SaivVlDk~G~Vkfvke-GaLt~a 170 (184)
T COG3054 97 TTIINTDDAIPGTGMFVKSSAESNKKEYPWSQFVLDSNG-VAKNAWQLKEE----SSAVVVLDKDGRVKFVKE-GALTQA 170 (184)
T ss_pred eEEeccCCccccccceeecchhhccccCCceeeEEccch-hhhhhhccccc----cceEEEEcCCCcEEEEec-CCccHH
Confidence 2234444411 001111110 011244554 5678777 555 7887521 237899999999999994 333456
Q ss_pred CHHHHHHHHHhh
Q psy2878 153 NPIETLRILDAI 164 (181)
Q Consensus 153 ~~~~ll~~l~~l 164 (181)
++++++..|.++
T Consensus 171 evQ~Vi~ll~~l 182 (184)
T COG3054 171 EVQQVIDLLQKL 182 (184)
T ss_pred HHHHHHHHHHHh
Confidence 778888877665
No 200
>KOG1731|consensus
Probab=89.87 E-value=0.1 Score=45.06 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=38.0
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCc-EEEEEecCCHHHHHHHHHHc
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNA-ILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~-~vi~Is~d~~~~~~~~~~~~ 96 (181)
+.-+|-|| ++||+.|+...|.++++.+.+++ .++ .|.+|..-..+. .+-++++
T Consensus 58 ~~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N-~~lCRef 112 (606)
T KOG1731|consen 58 KAKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN-VKLCREF 112 (606)
T ss_pred hhHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh-hhhHhhc
Confidence 35677888 88999999999999999888887 444 555666544333 3446655
No 201
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=89.74 E-value=4.7 Score=35.03 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=71.7
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
.+|..+|+..+. +.+| ....+.++.| +++||.|- . -+.. .+. ......+...+..++.+
T Consensus 412 ~~G~~~p~~~~~---------~~~~----~~~~~d~~~~~~~~ll~~~--~-~~~~--~~~--~~~~~~~~~~~~~~~~~ 471 (538)
T PRK06183 412 PVGTLFPQPRVE---------LGGG----DRGLLDDVLGPGFAVLGWG--C-DPLA--GLS--DEQRARWRALGARFVQV 471 (538)
T ss_pred CcccCcCCCeeE---------cCCC----CcccchhccCCceEEEEec--C-Cchh--cCC--HHHHHHHHHcCCeEEEE
Confidence 468888988776 3344 4444566666 57777762 1 1211 111 11112355567777777
Q ss_pred ecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
....... .-....+.|.++.+++.|+.. -...+||-||+.|.+... ....+.+++.+
T Consensus 472 ~~~~~~~------------~~~~~~~~d~~g~~~~~~~~~------~~~~~lvRPD~~v~~~~~-----~~~~~~~~~~l 528 (538)
T PRK06183 472 VPAVQAH------------TAQDDHDSDVDGALRAWLARH------GASAVLLRPDRYVAAAAD-----AQTLGALLAAL 528 (538)
T ss_pred ecccccc------------cCCCceeecCCchHHHHHHhC------CCEEEEECCCEEEEEeeC-----HHHHHHHHHHH
Confidence 6442110 112356789999999999964 346899999999986541 23567777776
Q ss_pred Hhh
Q psy2878 162 DAI 164 (181)
Q Consensus 162 ~~l 164 (181)
...
T Consensus 529 ~~~ 531 (538)
T PRK06183 529 AAL 531 (538)
T ss_pred Hhh
Confidence 543
No 202
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=89.23 E-value=3.1 Score=29.75 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCC
Q psy2878 60 EISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQN 138 (181)
Q Consensus 60 ~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g 138 (181)
...=|++..+++++.+..=+.|++++.+.+++. ++. ....++......++++++++. ++| +||..+|
T Consensus 74 S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~L-r~l----apgl~l~P~sgddLA~rL~l~-----HYP--vLIt~~g 140 (142)
T PF11072_consen 74 SRQWLQQNAEELKQLGAVGLVVNVATEAALQRL-RQL----APGLPLLPVSGDDLARRLGLS-----HYP--VLITATG 140 (142)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHH-HHH----cCCCeecCCCHHHHHHHhCCC-----ccc--EEeecCC
Confidence 344467788888888888899999998888774 443 445667766678999999986 544 5676665
No 203
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.56 E-value=5 Score=34.73 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=19.7
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHH
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKD 70 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~ 70 (181)
+++-+..|.+..||+|+.-...++++..+
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVL 144 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHh
Confidence 45544444588999999777777666543
No 204
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=88.45 E-value=6.8 Score=27.54 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=23.2
Q ss_pred ceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 127 ALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 127 ~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+.|+.-|+ +||++++..--..-.++..+.|.+.|..
T Consensus 95 SSPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~ 130 (136)
T PF06491_consen 95 SSPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQD 130 (136)
T ss_dssp -SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHH
T ss_pred CCchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHH
Confidence 46777788 7999999884222335677777776654
No 205
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=88.12 E-value=1 Score=29.92 Aligned_cols=35 Identities=9% Similarity=-0.012 Sum_probs=20.3
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
..++|+. .+|||.|...... +.+.++.+-.+..|.
T Consensus 8 ~~Vvvys--k~~Cp~C~~ak~~-------L~~~~i~~~~vdid~ 42 (99)
T TIGR02189 8 KAVVIFS--RSSCCMCHVVKRL-------LLTLGVNPAVHEIDK 42 (99)
T ss_pred CCEEEEE--CCCCHHHHHHHHH-------HHHcCCCCEEEEcCC
Confidence 3444443 7899999855433 334456555565553
No 206
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=86.40 E-value=4.4 Score=29.74 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=52.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC---CCCeEEEEEeeCCCCCCChhHHHHHHHHHH-------HH
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF---PGKWKIFYFYPKDFTFVCPTEISEYNKLVK-------DF 71 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~---~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~-------~~ 71 (181)
+.+|..+|+..+.- =.+| +++.|.+. .|++-|++|-...-.+.+...+..|.+..+ .|
T Consensus 30 l~~G~Rlp~~~v~r--------~aD~----~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~ 97 (169)
T PF07976_consen 30 LRPGRRLPSAKVVR--------HADG----NPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRF 97 (169)
T ss_dssp S-TTCB----EEEE--------TTTT----EEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHH
T ss_pred cCCccccCCceEEE--------EcCC----CChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhc
Confidence 67999999999872 3778 99999763 689888888644334444334444444332 22
Q ss_pred Hhc------CcEEEEEecCCHHHH--HH---HHHHcCCCcc-cceeEEEcC------CchHHHHhCCC
Q psy2878 72 NER------NAILLGGSSDNEFVK--LA---WRRENSNLYK-LNHWQFSDT------NGSLIDQLGIR 121 (181)
Q Consensus 72 ~~~------~~~vi~Is~d~~~~~--~~---~~~~~~~~~~-~~~~~~~D~------~~~~~~~~gv~ 121 (181)
... -++++.|...+..+. .. ....+....+ -.+.++.|. .+.+.+.|||.
T Consensus 98 ~~~~~~~~s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid 165 (169)
T PF07976_consen 98 TPKDRDPDSVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGID 165 (169)
T ss_dssp SBTTS-TTSSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBB
T ss_pred CCCCCCCCCeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCC
Confidence 221 278888886542211 11 1111101112 235666763 36778888864
No 207
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=86.21 E-value=7 Score=25.24 Aligned_cols=39 Identities=3% Similarity=-0.182 Sum_probs=21.1
Q ss_pred CCCeEEEEEeeC---CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 40 PGKWKIFYFYPK---DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 40 ~gk~~ll~F~~~---~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+.++++|+.-.+ .|||.|...... +.+.++.+-.+..+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~-------L~~~~i~y~~idv~~ 47 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQI-------LNQLGVDFGTFDILE 47 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHH-------HHHcCCCeEEEEcCC
Confidence 345666664322 478888644433 344456666666544
No 208
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=86.08 E-value=1.3 Score=29.60 Aligned_cols=43 Identities=5% Similarity=-0.193 Sum_probs=25.3
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--C--CHHHHHHHHHHc
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--D--NEFVKLAWRREN 96 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d--~~~~~~~~~~~~ 96 (181)
.+|...+|+.|+... +.++++|+.+--|.. + ..+.+.++....
T Consensus 2 ~iY~~~~C~~c~ka~-------~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 2 TIYGNPNCSTSRKAL-------AWLEEHGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred EEEECCCCHHHHHHH-------HHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 355588899998554 334445655544443 2 355666666654
No 209
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=85.81 E-value=2.1 Score=29.21 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=38.6
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--CC--HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--DN--EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+.+|....|+.|+... +.++++|+.+-.+.. ++ .+.+.+|.... +.++.-+...++...+..+.
T Consensus 2 i~iY~~~~C~~c~ka~-------~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~----~~~~~~l~n~~~~~~k~l~~ 69 (115)
T cd03032 2 IKLYTSPSCSSCRKAK-------QWLEEHQIPFEERNLFKQPLTKEELKEILSLT----ENGVEDIISTRSKAFKNLNI 69 (115)
T ss_pred EEEEeCCCCHHHHHHH-------HHHHHCCCceEEEecCCCcchHHHHHHHHHHh----cCCHHHHHhcCcHHHHHcCC
Confidence 3456578899998544 334455666666654 32 56777777765 44444444556666666654
No 210
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=85.53 E-value=1.8 Score=31.32 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=28.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
.++..|+.|+ ...||.|....+.+.++.+++.. ++.+.
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLPK-DVKFE 51 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhCCC-CceEE
Confidence 4677777776 66799999999999998888733 45444
No 211
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=84.71 E-value=1.6 Score=29.61 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=25.4
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--CC--HHHHHHHHHHc
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--DN--EFVKLAWRREN 96 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d~--~~~~~~~~~~~ 96 (181)
.|...+|+.|+.... .++++|+.+--+.. ++ .+.+.++....
T Consensus 3 iY~~~~C~~c~ka~~-------~L~~~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 3 FYEYPKCSTCRKAKK-------WLDEHGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred EEECCCCHHHHHHHH-------HHHHcCCceEEecccCCcccHHHHHHHHHHc
Confidence 455778999985553 34445665555543 33 55666777654
No 212
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=84.63 E-value=1.9 Score=30.22 Aligned_cols=65 Identities=8% Similarity=0.001 Sum_probs=38.1
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--CC--HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--DN--EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+.+|...+|+.|+... +.+.++|+.+-.+.. ++ .+.+.+|.... +..+.-+....+...+..+..
T Consensus 2 i~iY~~~~C~~C~ka~-------~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~----~~g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK01655 2 VTLFTSPSCTSCRKAK-------AWLEEHDIPFTERNIFSSPLTIDEIKQILRMT----EDGTDEIISTRSKVFQKLNVD 70 (131)
T ss_pred EEEEeCCCChHHHHHH-------HHHHHcCCCcEEeeccCChhhHHHHHHHHHHh----cCCHHHHHhcCcHHHHhCCCC
Confidence 3456688999998644 445556766655553 33 45666777654 334444444556666665543
No 213
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=84.54 E-value=3.2 Score=26.17 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=22.4
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
|....||.|....+.+.++.... ..++++.-..
T Consensus 4 f~d~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~ 36 (98)
T cd02972 4 FFDPLCPYCYLFEPELEKLLYAD-DGGVRVVYRP 36 (98)
T ss_pred EECCCCHhHHhhhHHHHHHHhhc-CCcEEEEEec
Confidence 34778999999999988887333 3345555443
No 214
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=83.45 E-value=13 Score=27.02 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=47.8
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC---HHHHHHHHHHcCCCc
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN---EFVKLAWRRENSNLY 100 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~---~~~~~~~~~~~~~~~ 100 (181)
|.|| +++.||..|...- .....| .-+...+++..+.+.|-.++=+|.-+ ....+.|+.+..+..
T Consensus 5 DIDG-----TiT~SD~~G~i~~--~~G~d~------~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~ 71 (157)
T PF08235_consen 5 DIDG-----TITKSDVLGHILP--ILGKDW------THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQG 71 (157)
T ss_pred eccC-----CcCccchhhhhhh--ccCchh------hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCC
Confidence 7887 8999998776321 121223 34566788999999999999999755 566778887653322
Q ss_pred -cc-ceeEEEcC
Q psy2878 101 -KL-NHWQFSDT 110 (181)
Q Consensus 101 -~~-~~~~~~D~ 110 (181)
++ .-|++.-|
T Consensus 72 ~~lP~Gpv~~sP 83 (157)
T PF08235_consen 72 HNLPDGPVLLSP 83 (157)
T ss_pred ccCCCCCEEECC
Confidence 22 24455443
No 215
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=83.43 E-value=2.8 Score=28.64 Aligned_cols=61 Identities=10% Similarity=-0.098 Sum_probs=35.4
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC----HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN----EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+|....|+.|+....- ++++|+.+..+.... .+.+.++.... +..+.-+....+...+.++
T Consensus 3 iY~~~~C~~c~ka~~~-------L~~~~i~~~~idi~~~~~~~~el~~l~~~~----~~~~~~lin~~~~~~k~l~ 67 (117)
T TIGR01617 3 VYGSPNCTTCKKARRW-------LEANGIEYQFIDIGEDGPTREELLDILSLL----EDGIDPLLNTRGQSYRALN 67 (117)
T ss_pred EEeCCCCHHHHHHHHH-------HHHcCCceEEEecCCChhhHHHHHHHHHHc----CCCHHHheeCCCcchhhCC
Confidence 4557789999865533 444566666666432 44556666655 4444444445566666655
No 216
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=82.87 E-value=14 Score=25.99 Aligned_cols=68 Identities=12% Similarity=-0.026 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCcEEE--EEecCCHHHHHHHHHHcCCCcc-cceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCC
Q psy2878 62 SEYNKLVKDFNERNAILL--GGSSDNEFVKLAWRRENSNLYK-LNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQN 138 (181)
Q Consensus 62 ~~l~~l~~~~~~~~~~vi--~Is~d~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g 138 (181)
..|+++..+.++.|+.++ |+-.++.....+.+.+.....+ ..+.+ |..+.++|++. ..|+.+++..+.
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~L~~~~~~~~v~I----dP~lF~~f~I~-----~VPa~V~~~~~~ 82 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKDGGKSGVQI----DPQWFKQFDIT-----AVPAFVVVKDGL 82 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCCcEEE----ChHHHhhcCce-----EcCEEEEECCCC
Confidence 456777777777665443 5555665555555554422222 33333 68999999997 677877775543
No 217
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=82.73 E-value=13 Score=32.43 Aligned_cols=115 Identities=8% Similarity=0.059 Sum_probs=67.4
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
.+|..+|+..+. .+| +..++.|+-| +++||.|-.. ... ....+.. .....++.++.+
T Consensus 428 ~pG~r~p~~~~~----------~~~----~~~~l~dl~g~~f~ll~~~~~-----~~~--~~~~~~~-~~~~~~~~~~~~ 485 (547)
T PRK08132 428 VPGAPAPDAPVR----------ADG----EPGWLLDLLGGGFTLLLFGDD-----AAA--AALLQAL-AAAALPVRVVAV 485 (547)
T ss_pred CCCCCCCCCccc----------CCC----CceEHHHhcCCCEEEEEecCC-----chh--hhhhhhh-hccCCceEEEEE
Confidence 467777776654 235 5667777755 5777766311 111 1111111 112234556666
Q ss_pred ecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
..+... ..+-..+.|.++.+++.|++. ....+||-|||.|.++.. ....+.+.+.+
T Consensus 486 ~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~------~~~~~LvRPDg~va~~~~-----~~~~~~~~~~l 541 (547)
T PRK08132 486 VPAGAA-------------QAAAGVLEDADGLAAERYDAR------PGTVYLIRPDQHVAARWR-----TPDAAAVRAAL 541 (547)
T ss_pred ecCccc-------------ccCcccccCcccHHHHHhCCC------CCeEEEECCCceEEEEec-----CCCHHHHHHHH
Confidence 543211 112235679999999999974 346899999999998762 13667777776
Q ss_pred Hh
Q psy2878 162 DA 163 (181)
Q Consensus 162 ~~ 163 (181)
+.
T Consensus 542 ~~ 543 (547)
T PRK08132 542 AR 543 (547)
T ss_pred HH
Confidence 65
No 218
>PRK10824 glutaredoxin-4; Provisional
Probab=82.51 E-value=5.8 Score=27.25 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=14.3
Q ss_pred CeEEEEEeeC----CCCCCChhHHHHHHH
Q psy2878 42 KWKIFYFYPK----DFTFVCPTEISEYNK 66 (181)
Q Consensus 42 k~~ll~F~~~----~~cp~C~~~~~~l~~ 66 (181)
+.++|+.- + .+||+|..-..-|++
T Consensus 15 ~~Vvvf~K-g~~~~p~Cpyc~~ak~lL~~ 42 (115)
T PRK10824 15 NPILLYMK-GSPKLPSCGFSAQAVQALSA 42 (115)
T ss_pred CCEEEEEC-CCCCCCCCchHHHHHHHHHH
Confidence 44555543 3 489999866544443
No 219
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.51 E-value=15 Score=31.82 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=18.3
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHH
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKD 70 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~ 70 (181)
+++-+..|.+..||+|+.....++++..+
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~ 145 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALL 145 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 34434444488899998766666655544
No 220
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=80.69 E-value=5.4 Score=29.35 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEE
Q psy2878 59 TEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 59 ~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
.-.|++.+..++.++.|+.++.+|.+.......|..+. +++|..-+
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l----~v~fi~~A 91 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL----GVPFIYRA 91 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc----CCceeecc
Confidence 34578889999999999999999999998888888876 66655443
No 221
>KOG4277|consensus
Probab=80.22 E-value=4.3 Score=32.81 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=22.3
Q ss_pred eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC
Q psy2878 43 WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN 75 (181)
Q Consensus 43 ~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~ 75 (181)
..++.|| +.||..|.+.-|--.+.--++++.|
T Consensus 45 iW~VdFY-APWC~HCKkLePiWdeVG~elkdig 76 (468)
T KOG4277|consen 45 IWFVDFY-APWCAHCKKLEPIWDEVGHELKDIG 76 (468)
T ss_pred eEEEEee-chhhhhcccccchhHHhCcchhhcC
Confidence 5677887 9999999876666555555555444
No 222
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=80.10 E-value=33 Score=30.66 Aligned_cols=124 Identities=17% Similarity=0.204 Sum_probs=67.6
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCC-C--CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-----
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESS-F--PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE----- 73 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~-~--~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~----- 73 (181)
+.+|..+|+..+... .+| +++.|.+ + .|++.|++|- + ..........|..+.+.+.+
T Consensus 463 ~~~G~r~~~~~v~~~--------~d~----~~~~l~~~~~~~g~~~l~~f~-~--~~~~~~~~~~l~~~~~~l~~~~~~~ 527 (634)
T PRK08294 463 FPIGKRFHSAPVIRL--------ADA----KPVHLGHAATADGRWRIYAFA-D--AADPAGPGSALDALCEFLAESPDSP 527 (634)
T ss_pred CCCceeCCCCceeec--------cCC----CchhHhhhcccCCCEEEEEEc-C--CCCcchhHHHHHHHHHHHhhCccch
Confidence 567889998888721 455 6666553 2 5788888874 2 22223445556555555521
Q ss_pred ------cC------cEEEEEecCCHH-----HHHHHHHHcCCCccc-ce-eEEEc--CCchHHHHhCCCCCCCcceeeEE
Q psy2878 74 ------RN------AILLGGSSDNEF-----VKLAWRRENSNLYKL-NH-WQFSD--TNGSLIDQLGIRHETGVALRATF 132 (181)
Q Consensus 74 ------~~------~~vi~Is~d~~~-----~~~~~~~~~~~~~~~-~~-~~~~D--~~~~~~~~~gv~~~~g~~~p~~~ 132 (181)
.+ +.++.|...+.. .+.+....+....++ .+ .++.| ........||+... ..+.+
T Consensus 528 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~----~g~~v 603 (634)
T PRK08294 528 LRRFTPSGADIDAVIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDRD----RGAVV 603 (634)
T ss_pred HhhcCCCCCCCCcEEEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCCC----ceeEE
Confidence 11 566666654311 111212211111122 22 24444 22467788887522 24788
Q ss_pred EEcCCCcEEEEE
Q psy2878 133 IFDPQNIIQHIT 144 (181)
Q Consensus 133 liD~~g~i~~~~ 144 (181)
|+-|||.|-+..
T Consensus 604 vvRPD~~v~~~~ 615 (634)
T PRK08294 604 VVRPDQYVANVL 615 (634)
T ss_pred EECCCCceEEEe
Confidence 999999888766
No 223
>PRK12559 transcriptional regulator Spx; Provisional
Probab=79.57 E-value=4.2 Score=28.53 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=38.4
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--C--CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--D--NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+.+|...+|+.|+... +.+.++|+.+-.+.. + +.+.+..|.... +.++.-+....+...+..+..
T Consensus 2 i~iY~~~~C~~crkA~-------~~L~~~gi~~~~~di~~~~~s~~el~~~l~~~----~~g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK12559 2 VVLYTTASCASCRKAK-------AWLEENQIDYTEKNIVSNSMTVDELKSILRLT----EEGATEIISTRSKTFQDLNIN 70 (131)
T ss_pred EEEEeCCCChHHHHHH-------HHHHHcCCCeEEEEeeCCcCCHHHHHHHHHHc----CCCHHHHHhcCcHHHHhCCCC
Confidence 3455578899998644 344555665555543 3 367778887764 334333444456666666543
No 224
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=77.93 E-value=20 Score=24.98 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=33.0
Q ss_pred hHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccCCc
Q psy2878 113 SLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKL 169 (181)
Q Consensus 113 ~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~~~ 169 (181)
.+.+.||+. +...|+..+++.++. .|... ...-..+.+.+.++....|+.
T Consensus 70 ~~~~~fgl~---~~~~P~v~i~~~~~~-KY~~~---~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 70 DLEEALNIG---GFGYPAMVAINFRKM-KFATL---KGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred HHHHHcCCC---ccCCCEEEEEecccC-ccccc---cCccCHHHHHHHHHHHHcCCc
Confidence 467778875 113568899998876 66631 122456788888888877754
No 225
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=77.34 E-value=5.5 Score=33.55 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=23.2
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
|..+|||.|...- +.+.++|+..--|..+......++.+
T Consensus 7 ys~~~Cp~C~~aK-------~~L~~~gi~~~~idi~~~~~~~~~~~ 45 (410)
T PRK12759 7 YTKTNCPFCDLAK-------SWFGANDIPFTQISLDDDVKRAEFYA 45 (410)
T ss_pred EeCCCCHHHHHHH-------HHHHHCCCCeEEEECCCChhHHHHHH
Confidence 3488999997443 33445677766666664443334333
No 226
>PTZ00062 glutaredoxin; Provisional
Probab=76.43 E-value=20 Score=27.21 Aligned_cols=48 Identities=4% Similarity=-0.103 Sum_probs=23.3
Q ss_pred CCCeEEEEEeeCC---CCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 40 PGKWKIFYFYPKD---FTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 40 ~gk~~ll~F~~~~---~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
..++++|+.-.+. +||.|+... +.+++.++.+.-+..+...+.++.+.
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k-------~~L~~~~i~y~~~DI~~d~~~~~~l~ 161 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVV-------NMLNSSGVKYETYNIFEDPDLREELK 161 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHH-------HHHHHcCCCEEEEEcCCCHHHHHHHH
Confidence 3456766665333 455554332 22334466666666554344434333
No 227
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=76.13 E-value=21 Score=24.33 Aligned_cols=68 Identities=13% Similarity=0.023 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCcEEE--EEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcC
Q psy2878 62 SEYNKLVKDFNERNAILL--GGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDP 136 (181)
Q Consensus 62 ~~l~~l~~~~~~~~~~vi--~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~ 136 (181)
..|+++..+.++.|+.++ |+..++.....+++.+.....+..-.+.. |..+.++|++. ..|+.++...
T Consensus 11 ~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~~~v~I--dP~~F~~y~I~-----~VPa~V~~~~ 80 (113)
T PF09673_consen 11 ASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDDPCPGVQI--DPRLFRQYNIT-----AVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccCCCcceeE--ChhHHhhCCce-----EcCEEEEEcC
Confidence 356677777777676554 55566655555656654332332223333 68899999997 6777777754
No 228
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=75.47 E-value=7.1 Score=27.42 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=38.2
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--C--CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--D--NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
..|...+|+.|+.- .+.++++|+.+-.+.. + +.+.+..|.... +..+.-+....+...+..+.
T Consensus 3 ~iY~~~~C~~crkA-------~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~----~~~~~~lin~~~~~~k~L~~ 69 (132)
T PRK13344 3 KIYTISSCTSCKKA-------KTWLNAHQLSYKEQNLGKEPLTKEEILAILTKT----ENGIESIVSSKNRYAKALDC 69 (132)
T ss_pred EEEeCCCCHHHHHH-------HHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHh----CCCHHHhhccCcHHHHhCCc
Confidence 34557789999753 3445666776666653 3 367788888775 44444444455666665553
No 229
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=75.24 E-value=2.9 Score=31.54 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=26.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEE
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLG 80 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~ 80 (181)
.|++.|+.|| .-.||+|...-+.+ ..+.+.+.+ ++.++-
T Consensus 36 ~~~~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~ 77 (207)
T PRK10954 36 AGEPQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTK 77 (207)
T ss_pred CCCCeEEEEe-CCCCccHHHhcccccchHHHHHhCCC-CCeEEE
Confidence 5788788887 55799998876655 555665543 444443
No 230
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=75.18 E-value=7 Score=29.51 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=33.5
Q ss_pred EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe-cCCHHHHHHHHHHc
Q psy2878 44 KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS-SDNEFVKLAWRREN 96 (181)
Q Consensus 44 ~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is-~d~~~~~~~~~~~~ 96 (181)
.+.+|. ...|+.|...+..+.. ....+.|+.|. ..++..++.|+.++
T Consensus 111 rlalFv-kd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~ 158 (200)
T TIGR03759 111 RLALFV-KDDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRH 158 (200)
T ss_pred eEEEEe-CCCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHc
Confidence 445555 5789999877766632 34567888776 45678999999987
No 231
>KOG0911|consensus
Probab=74.22 E-value=2.5 Score=32.46 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=33.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFV 88 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~ 88 (181)
+++..++.|| +.||.+|.....-+..+.+.+ .+++++-+..+....
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~e 61 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPE 61 (227)
T ss_pred ccchhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhH
Confidence 6788999998 889999976666666666666 567777777665433
No 232
>KOG2116|consensus
Probab=73.15 E-value=11 Score=33.56 Aligned_cols=74 Identities=16% Similarity=0.098 Sum_probs=47.9
Q ss_pred eeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec---CCHHHHHHHHHHcCCCc--ccceeEE
Q psy2878 33 VITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS---DNEFVKLAWRRENSNLY--KLNHWQF 107 (181)
Q Consensus 33 ~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~---d~~~~~~~~~~~~~~~~--~~~~~~~ 107 (181)
+|+=+|.-|. ++-+....|.. ..+.+||.+..+.|-+++-.|. ...+..+.|+....+.+ -+.-|++
T Consensus 540 TITKSDvLGh--~lp~iGkDWTh------~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPVi 611 (738)
T KOG2116|consen 540 TITKSDVLGH--VLPMIGKDWTH------TGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVI 611 (738)
T ss_pred ceEhhhhhhh--hhhhhcCcchh------hhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEE
Confidence 5555555554 23333455553 4577899999999999999985 44667777777654433 3457788
Q ss_pred EcCCchH
Q psy2878 108 SDTNGSL 114 (181)
Q Consensus 108 ~D~~~~~ 114 (181)
..|++-+
T Consensus 612 LSPd~lf 618 (738)
T KOG2116|consen 612 LSPDSLF 618 (738)
T ss_pred eCCCcch
Confidence 7777444
No 233
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.81 E-value=7.4 Score=29.90 Aligned_cols=41 Identities=12% Similarity=0.044 Sum_probs=28.6
Q ss_pred ecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCc
Q psy2878 35 TESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76 (181)
Q Consensus 35 ~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~ 76 (181)
...+..++.+++.|+ -.-||.|...++.+.+.+....+.++
T Consensus 78 ~~G~~~~~v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~~~~~ 118 (244)
T COG1651 78 VLGNPYAPVTVVEFF-DYTCPYCKEAFPELKKKYIDDGKVRL 118 (244)
T ss_pred cccCCCCCceEEEEe-cCcCccHHHHHHHHHHHhhhcCCCce
Confidence 334444466666666 66799999889999887777766543
No 234
>KOG0914|consensus
Probab=71.90 E-value=2.7 Score=32.37 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=29.9
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAIL 78 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~v 78 (181)
++.++-|| +.|.|-|....|-+.++-.+|...++.+
T Consensus 145 t~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lkF 180 (265)
T KOG0914|consen 145 TYWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLKF 180 (265)
T ss_pred eEEEEEEE-eecChhhcccccccHHHHHHhCCCCCcc
Confidence 46788888 8899999999999999998887665544
No 235
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=70.22 E-value=3.4 Score=26.16 Aligned_cols=53 Identities=11% Similarity=0.001 Sum_probs=31.3
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEE
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
|.||....|+.|..-...|.++. .+.++.+-.|..+..+. +.++| +...|++.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~---~~~~~~l~~vDI~~d~~---l~~~Y----~~~IPVl~ 54 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVA---AEFPFELEEVDIDEDPE---LFEKY----GYRIPVLH 54 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCC---TTSTCEEEEEETTTTHH---HHHHS----CTSTSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHH---hhcCceEEEEECCCCHH---HHHHh----cCCCCEEE
Confidence 45666777888875554444432 23457788888775433 56665 66666654
No 236
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=70.17 E-value=18 Score=24.45 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=33.0
Q ss_pred eeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 32 KVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 32 ~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
+.-.+++|.+ ..-|+-|+ .|..|+ -..+....+++.+.|+++|-+|.
T Consensus 26 r~g~F~~y~~~~~elvgf~---~CgGCp--g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 26 RKGAFARYDDEDVELVGFF---TCGGCP--GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred ccCccccCCCCCeEEEEEe---eCCCCC--hhHHHHHHHHHHHCCCCEEEEcC
Confidence 3445677775 46777777 456665 55666677777888999998884
No 237
>PHA03075 glutaredoxin-like protein; Provisional
Probab=69.48 E-value=3.4 Score=28.40 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=28.8
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
|.+++.|- ...|+.|......|+++-++|.=..++++..-
T Consensus 2 K~tLILfG-KP~C~vCe~~s~~l~~ledeY~ilrVNIlSfF 41 (123)
T PHA03075 2 KKTLILFG-KPLCSVCESISEALKELEDEYDILRVNILSFF 41 (123)
T ss_pred CceEEEeC-CcccHHHHHHHHHHHHhhccccEEEEEeeeee
Confidence 45777775 77899998887778777777765556666554
No 238
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=69.03 E-value=48 Score=25.14 Aligned_cols=89 Identities=12% Similarity=0.209 Sum_probs=46.4
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC--------CHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD--------NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
|--|.+-.|..|+.--..|.++.++ .++-.++..+| ++....+|.++. ...++.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQ---------------r~Y~~~ 63 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYWDYLGWKDPFASPEFTQRQ---------------RAYARR 63 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT-SSSS--TT--HHHHHHH---------------HHHHHH
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcccCCCCCCccCChhHHHHH---------------HHHHHH
Confidence 4456577899999888888888776 36777777765 234444555543 344455
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+|.. ++.+|.. || ||+.-... .+.+++..+|++..
T Consensus 64 ~~~~---~vYTPQ~-vV--nG~~~~~g-------~~~~~~~~ai~~~~ 98 (202)
T PF06764_consen 64 FGLR---SVYTPQV-VV--NGREHRVG-------SDRAAVEAAIQAAR 98 (202)
T ss_dssp TT-S------SSEE-EE--TTTEEEET-------T-HHHHHHHHHHHH
T ss_pred hCCC---CCcCCeE-EE--CCeeeeec-------cCHHHHHHHHHHhh
Confidence 5532 3345654 45 45554333 45566666666554
No 239
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=68.61 E-value=53 Score=28.79 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=24.1
Q ss_pred CchHHHHhCCCCCCCcceeeEEEEcCCCc---EEEEEeccCCCCCCHHHHHHHH
Q psy2878 111 NGSLIDQLGIRHETGVALRATFIFDPQNI---IQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 111 ~~~~~~~~gv~~~~g~~~p~~~liD~~g~---i~~~~~~~~~~~~~~~~ll~~l 161 (181)
+.+++..|++. ..|++.|+|.+|. |+|.. .+.+..+..++.+|
T Consensus 408 ~~~~~~~~~v~-----~~P~~~i~~~~~~~~~i~f~g---~P~G~Ef~s~i~~i 453 (555)
T TIGR03143 408 EPESETLPKIT-----KLPTVALLDDDGNYTGLKFHG---VPSGHELNSFILAL 453 (555)
T ss_pred chhhHhhcCCC-----cCCEEEEEeCCCcccceEEEe---cCccHhHHHHHHHH
Confidence 45666777764 4567777765653 66555 33344444444444
No 240
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=68.28 E-value=23 Score=22.69 Aligned_cols=56 Identities=18% Similarity=0.059 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 65 NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 65 ~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
.+..+..++..+.++.|..|-++...+-...+...+++++ .......++.+..|..
T Consensus 14 ~~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv-~~~~t~~eLG~A~G~~ 69 (82)
T PRK13601 14 KQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI-VYIDTMKELGVMCGID 69 (82)
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE-EEeCCHHHHHHHHCCc
Confidence 4455666666789999999876666555554444458888 3455678999998863
No 241
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=67.98 E-value=35 Score=23.11 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 65 NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 65 ~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
.+..+.++...+.+|.|+.|-++..++-.+.+...+++++..+.....++.+..|.
T Consensus 31 ~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk 86 (108)
T PTZ00106 31 KSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGR 86 (108)
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCC
Confidence 34455566667899999999766655544444334477776555678899999885
No 242
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=65.57 E-value=37 Score=22.50 Aligned_cols=57 Identities=12% Similarity=-0.003 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 64 YNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 64 l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
.++..+..+...+.++.|+.|-++...+-...+...++.++..+.....++.+..|.
T Consensus 21 ~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk 77 (99)
T PRK01018 21 SKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGK 77 (99)
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCC
Confidence 345566667667899999988766555444433233477776655567899999885
No 243
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.52 E-value=8 Score=35.74 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=57.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhc--------------------------CcEEEEEecCCHHHHHHHHHHcCC--Cccc
Q psy2878 51 KDFTFVCPTEISEYNKLVKDFNER--------------------------NAILLGGSSDNEFVKLAWRRENSN--LYKL 102 (181)
Q Consensus 51 ~~~cp~C~~~~~~l~~l~~~~~~~--------------------------~~~vi~Is~d~~~~~~~~~~~~~~--~~~~ 102 (181)
-.|||.|.+.+..+.-.+++-+.. |..-|+|++++ +.-+.++.+... ..+-
T Consensus 172 VNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~D-eRYk~LvGk~v~lPl~~r 250 (877)
T COG0525 172 VNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDD-ERYKHLVGKEVILPLVGR 250 (877)
T ss_pred ccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCC-hhhHhhcCCEEecCCCCC
Confidence 459999999998887776665331 11223333333 222333333222 2344
Q ss_pred ceeEEEcCCchHHHHhCCC-------CCC-----C--cceeeEEEEcCCCcEEEEEe---ccCCCCCCHHHHHHHHHhh
Q psy2878 103 NHWQFSDTNGSLIDQLGIR-------HET-----G--VALRATFIFDPQNIIQHITV---NNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 103 ~~~~~~D~~~~~~~~~gv~-------~~~-----g--~~~p~~~liD~~g~i~~~~~---~~~~~~~~~~~ll~~l~~l 164 (181)
..|+++|.. +-..||-- ++. | -..|..-+||.+|++....- .+......-.++++.|++.
T Consensus 251 ~IpIiaD~~--VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~ 327 (877)
T COG0525 251 EIPIIADEY--VDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQ 327 (877)
T ss_pred eeeeecCcc--cCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhC
Confidence 588888743 33455532 110 1 12567889999999974331 1122222234555555544
No 244
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=64.59 E-value=12 Score=25.16 Aligned_cols=43 Identities=12% Similarity=0.012 Sum_probs=26.7
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe--cC--CHHHHHHHHHHc
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS--SD--NEFVKLAWRREN 96 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is--~d--~~~~~~~~~~~~ 96 (181)
.+|...+|+.|+... +.+.++|+.+--+. .+ +.+.+++|..+.
T Consensus 2 ~iy~~~~C~~crka~-------~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 2 TLYGIKNCDTVKKAR-------KWLEARGVAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred EEEeCCCCHHHHHHH-------HHHHHcCCCeEEEecccCCCCHHHHHHHHHHh
Confidence 355578899998644 33445565555554 33 367778887765
No 245
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=63.08 E-value=15 Score=22.50 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=24.1
Q ss_pred eeEEEEcCCCcEEEEEecc-CCCCCCHHHHHHHHHh
Q psy2878 129 RATFIFDPQNIIQHITVNN-LNVGRNPIETLRILDA 163 (181)
Q Consensus 129 p~~~liD~~g~i~~~~~~~-~~~~~~~~~ll~~l~~ 163 (181)
--.|.||++|+|....+.. .+...--++++++++.
T Consensus 19 ~v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~ 54 (79)
T PF03544_consen 19 VVEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKK 54 (79)
T ss_dssp EEEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC
T ss_pred EEEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHh
Confidence 3578999999999877632 2323355677777766
No 246
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=61.91 E-value=10 Score=30.25 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=40.2
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCC--CCeEEEEEeeCCCCCCChhHHHH-HHHHHHHHH--hcCcEEEEE
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFP--GKWKIFYFYPKDFTFVCPTEISE-YNKLVKDFN--ERNAILLGG 81 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~--gk~~ll~F~~~~~cp~C~~~~~~-l~~l~~~~~--~~~~~vi~I 81 (181)
.+|-|.+. |.+| .++-.+.-. ++.+.++|+ |...... |.++...-. ..+++|+.|
T Consensus 74 ~VPVF~it---------n~~G----~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~~~~~kV~pv 133 (274)
T PF04278_consen 74 GVPVFTIT---------NSQG----EPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPELASGAKVVPV 133 (274)
T ss_dssp TSEEEEEE----------TT------B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHHHTT-EEEEE
T ss_pred CceEEEEE---------CCCC----CEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccccCceEEEEe
Confidence 56888888 8899 887666554 565666554 3333322 333333222 357999999
Q ss_pred ecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
+.+....+.. +...+..++.|.++.|+.
T Consensus 134 sL~~vY~l~~--~~~~k~~~~~F~~vP~~~ 161 (274)
T PF04278_consen 134 SLGKVYQLAQ--ENKKKPEGLQFRFVPDPK 161 (274)
T ss_dssp EHHHHHHHHH--HTTT-TT-EEEEEE--HH
T ss_pred cHHHHHHHHH--HhhcCCcCceEEEcCCHH
Confidence 9987655432 222234578899999843
No 247
>KOG0098|consensus
Probab=61.83 E-value=20 Score=27.11 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=49.9
Q ss_pred CCCCCCcccceeeeecCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc---CcEEEEEec--C-------CHH
Q psy2878 21 NLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNER---NAILLGGSS--D-------NEF 87 (181)
Q Consensus 21 ~~~d~~G~~~~~~~~l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~---~~~vi~Is~--d-------~~~ 87 (181)
|++|+.|.+.|..++-+=|+|. .+||++ --.|+.....|.+...+.+.+ |+.++.|.. | +.+
T Consensus 58 qiwDtaGqe~frsv~~syYr~a~GalLVy-----dit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~E 132 (216)
T KOG0098|consen 58 QIWDTAGQESFRSVTRSYYRGAAGALLVY-----DITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKE 132 (216)
T ss_pred EEEecCCcHHHHHHHHHHhccCcceEEEE-----EccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHH
Confidence 5668888667777777777874 455554 234677778888877777664 566666642 1 245
Q ss_pred HHHHHHHHcCCCccccee
Q psy2878 88 VKLAWRRENSNLYKLNHW 105 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~ 105 (181)
+-++|++++ ++.|-
T Consensus 133 EGeaFA~eh----gLifm 146 (216)
T KOG0098|consen 133 EGEAFAREH----GLIFM 146 (216)
T ss_pred HHHHHHHHc----Cceee
Confidence 667888887 66554
No 248
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=61.12 E-value=11 Score=25.94 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=41.1
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE--ecC--CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG--SSD--NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I--s~d--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+.+|....|..|+. ..+.++++|+..-.+ ..+ +.+.+.+|+... +..+.-+....+...+.++.
T Consensus 3 itiy~~p~C~t~rk-------a~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~----g~~~~~li~t~~~~~r~L~~ 70 (117)
T COG1393 3 ITIYGNPNCSTCRK-------ALAWLEEHGIEYTFIDYLKTPPSREELKKILSKL----GDGVEELINTRGTTYRELNL 70 (117)
T ss_pred EEEEeCCCChHHHH-------HHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHc----CccHHHHHHhccchHHHcCC
Confidence 45554556766653 444566667655444 333 467888888876 65566666667777888773
No 249
>KOG4614|consensus
Probab=60.78 E-value=14 Score=28.80 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=27.1
Q ss_pred eeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 128 LRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 128 ~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+..+||||++|+|++... +.....+.+.+...++-+.
T Consensus 248 ~GyV~L~D~s~kIRW~g~-G~aTp~Eve~L~~~~k~L~ 284 (287)
T KOG4614|consen 248 TGYVLLLDKSGKIRWQGF-GTATPEEVEQLLSCTKLLL 284 (287)
T ss_pred eEEEEEEccCceEEEeec-CCCCHHHHHHHHHHHHHHh
Confidence 457899999999999985 3444456777777766553
No 250
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=59.87 E-value=26 Score=27.76 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=54.2
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+.+|||+|| -..++.|......|..|..+|. .+.|+-|...... .. ..|..
T Consensus 146 ~~~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~~~----~~----------------------~~f~~ 196 (265)
T PF02114_consen 146 STWVVVHIY-EPGFPRCEIMNSCLECLARKYP--EVKFVKIRASKCP----AS----------------------ENFPD 196 (265)
T ss_dssp T-EEEEEEE--TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECGCC----TT----------------------TTS-T
T ss_pred CcEEEEEEE-eCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhccC----cc----------------------cCCcc
Confidence 346777777 6679999999999999999888 4888877765311 01 11222
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEecc---CCCCCCHHHHHHHHHhhc
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNN---LNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~---~~~~~~~~~ll~~l~~l~ 165 (181)
. ..|+.++. ++|.++..++.- .+.....++|-..|.+..
T Consensus 197 ~-----~LPtllvY-k~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 197 K-----NLPTLLVY-KNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp T-----C-SEEEEE-ETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred c-----CCCEEEEE-ECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 1 35687777 599999988742 122334556666665443
No 251
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=57.97 E-value=20 Score=28.22 Aligned_cols=82 Identities=13% Similarity=0.074 Sum_probs=39.4
Q ss_pred ceeeeecCCCCCC-eEEEEEeeCCC-CCCChhH-HHHH----------HHHHHH--HHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 30 AFKVITESSFPGK-WKIFYFYPKDF-TFVCPTE-ISEY----------NKLVKD--FNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 30 ~~~~~~l~~~~gk-~~ll~F~~~~~-cp~C~~~-~~~l----------~~l~~~--~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
+++.+++.++.|+ .+.|++....+ |+.|..- +... .+...+ +...++.=|.+|-+.+.-+.+|+.
T Consensus 23 ~ie~~~~~d~~g~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~~q~e~~~ 102 (260)
T COG1180 23 PIEKKPLVDGPGSIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPTLQAEFAL 102 (260)
T ss_pred cccccCCcCCCCcEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcchhhHHHHH
Confidence 4566788888883 34444432222 8888432 2211 111111 122256667888776655555444
Q ss_pred HcCCCc-ccceeEEEcCC
Q psy2878 95 ENSNLY-KLNHWQFSDTN 111 (181)
Q Consensus 95 ~~~~~~-~~~~~~~~D~~ 111 (181)
+..... ...+....|++
T Consensus 103 ~~~~~ake~Gl~~~l~Tn 120 (260)
T COG1180 103 DLLRAAKERGLHVALDTN 120 (260)
T ss_pred HHHHHHHHCCCcEEEEcC
Confidence 321111 12355555555
No 252
>PRK10026 arsenate reductase; Provisional
Probab=56.75 E-value=57 Score=23.23 Aligned_cols=96 Identities=8% Similarity=0.012 Sum_probs=50.8
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe--cCC--HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS--SDN--EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is--~d~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+.+|.-..|..|+..+. .++++|+.+-.+. .++ .+.++.|.... +.+..-+.-..+..++.++..
T Consensus 4 i~iY~~p~Cst~RKA~~-------wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~----g~~~~~lint~~~~yr~L~~~ 72 (141)
T PRK10026 4 ITIYHNPACGTSRNTLE-------MIRNSGTEPTIIHYLETPPTRDELVKLIADM----GISVRALLRKNVEPYEELGLA 72 (141)
T ss_pred EEEEeCCCCHHHHHHHH-------HHHHCCCCcEEEeeeCCCcCHHHHHHHHHhC----CCCHHHHHHcCCchHHHcCCC
Confidence 33454556888875553 3444465555554 443 67788888865 433222223344555555443
Q ss_pred -CC------------CCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 122 -HE------------TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 122 -~~------------~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
.. .+.-...-+|++.+|.++.+ ..+.+++.+
T Consensus 73 ~~~ls~~e~l~ll~~~P~LIKRPIi~~~~~a~i~R---------p~e~v~~~l 116 (141)
T PRK10026 73 EDKFTDDQLIDFMLQHPILINRPIVVTPLGTRLCR---------PSEVVLEIL 116 (141)
T ss_pred ccCCCHHHHHHHHHhCccceeCcEEEcCCCeEEEC---------CHHHHHHHh
Confidence 10 01113345788888876643 446666666
No 253
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=56.29 E-value=31 Score=27.41 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=47.8
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+.+|-|++. |.+| .++-.+.-.|..+.-+|+... ....+.+..+++...+.. .+++|+.|+.+.
T Consensus 80 ~~VPVFtIt---------n~~G----~pvl~s~~~~~~~~gvf~s~q--edA~afL~~lk~~~p~l~-~~~kV~pvsL~~ 143 (270)
T TIGR00995 80 AGTSVFTVS---------NAQN----EFVLASDNDGEKSIGLLCFRQ--EDAEAFLAQLRKRKPEVG-SQAKVVPITLDQ 143 (270)
T ss_pred cCCceEEEE---------cCCC----CeEEEECCCCCceEEEEECCH--HHHHHHHHHHHhhCcccc-CCceEEEEEHHH
Confidence 357888888 8888 877776554533333343110 012222333333333333 468999999987
Q ss_pred HHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 86 EFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
...+ .. . ++.|.++.|+.
T Consensus 144 vYkl---~~-e----~l~F~fiP~~~ 161 (270)
T TIGR00995 144 VYKL---KV-E----GIGFRFLPDPA 161 (270)
T ss_pred HHHH---hh-c----CccEEEeCCHH
Confidence 6544 22 2 68999999854
No 254
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=56.00 E-value=91 Score=23.91 Aligned_cols=32 Identities=6% Similarity=-0.034 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 65 NKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 65 ~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
.+..++++++|+.++..|-.+........++.
T Consensus 22 ~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~ 53 (256)
T TIGR00099 22 KEALAKLREKGIKVVLATGRPYKEVKNILKEL 53 (256)
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc
Confidence 44556677789999999988877777777765
No 255
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=55.83 E-value=28 Score=20.95 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=23.4
Q ss_pred eeEEEEcCCCcEEEEEeccCCCCC-CHHHHHHHHHhhc
Q psy2878 129 RATFIFDPQNIIQHITVNNLNVGR-NPIETLRILDAIQ 165 (181)
Q Consensus 129 p~~~liD~~g~i~~~~~~~~~~~~-~~~~ll~~l~~l~ 165 (181)
.-.|.||++|+|....+-..+... --++++++++...
T Consensus 13 ~v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~~ 50 (74)
T TIGR01352 13 VVRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKAR 50 (74)
T ss_pred EEEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhCC
Confidence 457899999999877763222222 2345667776553
No 256
>PRK12359 flavodoxin FldB; Provisional
Probab=52.84 E-value=57 Score=23.99 Aligned_cols=35 Identities=6% Similarity=0.056 Sum_probs=18.9
Q ss_pred EEEEcCCCcEEEEEeccCCC-CCCHHHHHHHHHhhc
Q psy2878 131 TFIFDPQNIIQHITVNNLNV-GRNPIETLRILDAIQ 165 (181)
Q Consensus 131 ~~liD~~g~i~~~~~~~~~~-~~~~~~ll~~l~~l~ 165 (181)
.-++|..++.+.--+...+. ...-+.+-++++++.
T Consensus 130 ~a~~~~~~~f~gl~lD~~nq~~~t~~ri~~W~~~~~ 165 (172)
T PRK12359 130 KPLTADGQLFVGLALDEVNQYDLSDERIQQWCEQIL 165 (172)
T ss_pred eeeEcCCCEEEEEEEcCCCchhhhHHHHHHHHHHHH
Confidence 34565445577666543333 224566666666654
No 257
>KOG0084|consensus
Probab=51.98 E-value=89 Score=23.76 Aligned_cols=59 Identities=15% Similarity=0.308 Sum_probs=36.2
Q ss_pred CCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh---cCcEEEEEe
Q psy2878 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE---RNAILLGGS 82 (181)
Q Consensus 20 ~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~---~~~~vi~Is 82 (181)
.|++|+.|=+-|++++.+=|+|-.-+|+-| --.|+.....+.+..++.+. .++..+.|.
T Consensus 60 lQIWDTAGQERFrtit~syYR~ahGii~vy----DiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVG 121 (205)
T KOG0084|consen 60 LQIWDTAGQERFRTITSSYYRGAHGIIFVY----DITKQESFNNVKRWIQEIDRYASENVPKLLVG 121 (205)
T ss_pred EEeeeccccHHHhhhhHhhccCCCeEEEEE----EcccHHHhhhHHHHHHHhhhhccCCCCeEEEe
Confidence 356677882233377777788854444444 12367777888887777766 355555554
No 258
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=50.47 E-value=42 Score=20.06 Aligned_cols=17 Identities=6% Similarity=-0.250 Sum_probs=10.8
Q ss_pred eeCCCCCCChhHHHHHH
Q psy2878 49 YPKDFTFVCPTEISEYN 65 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~ 65 (181)
|...+||.|.+..-.|.
T Consensus 4 y~~~~~p~~~rv~~~L~ 20 (71)
T cd03060 4 YSFRRCPYAMRARMALL 20 (71)
T ss_pred EecCCCcHHHHHHHHHH
Confidence 34668999976554443
No 259
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=50.34 E-value=51 Score=20.18 Aligned_cols=31 Identities=6% Similarity=-0.051 Sum_probs=21.4
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHH
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEY 64 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l 64 (181)
..+.+-++++..+.|.|- +. |..|......+
T Consensus 17 Gdv~lv~v~~~~V~V~l~-Ga-C~gC~~s~~Tl 47 (68)
T PF01106_consen 17 GDVELVDVDDGVVYVRLT-GA-CSGCPSSDMTL 47 (68)
T ss_dssp EEEEEEEEETTEEEEEEE-SS-CCSSCCHHHHH
T ss_pred CcEEEEEecCCEEEEEEE-eC-CCCCCCHHHHH
Confidence 788888887776666664 54 66776655555
No 260
>PHA02762 hypothetical protein; Provisional
Probab=49.62 E-value=25 Score=20.56 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=20.7
Q ss_pred eeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 129 RATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 129 p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
..++=||.+|++.|..+ .+.+.++.+.+..+
T Consensus 29 fvtigide~g~iayisi--ep~dkdl~~~i~ri 59 (62)
T PHA02762 29 FVTIGIDENDKISYISI--EPLDKDLKEGIKRI 59 (62)
T ss_pred EEEEeECCCCcEEEEEe--cccchHHHHhhhhe
Confidence 35778999999999995 33344455544443
No 261
>KOG2961|consensus
Probab=48.16 E-value=86 Score=22.97 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=40.3
Q ss_pred eeecCCCCC-CeEEEEEeeCCCC---C----CChhHHHHHHHHHHHHHhcCcEEEEEec-----CCHHHHHHHHHHcCCC
Q psy2878 33 VITESSFPG-KWKIFYFYPKDFT---F----VCPTEISEYNKLVKDFNERNAILLGGSS-----DNEFVKLAWRRENSNL 99 (181)
Q Consensus 33 ~~~l~~~~g-k~~ll~F~~~~~c---p----~C~~~~~~l~~l~~~~~~~~~~vi~Is~-----d~~~~~~~~~~~~~~~ 99 (181)
++..-+++| |.+|+. ...| | .-+.+++.+.+....|.++++.+++=|. |..+++++..++
T Consensus 34 p~~I~~~~~ikavVlD---KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~---- 106 (190)
T KOG2961|consen 34 PWEILKRKGIKAVVLD---KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEA---- 106 (190)
T ss_pred CcchhhccCceEEEEc---CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHH----
Confidence 344444455 555554 3344 2 3455777888888888878777766553 445555554443
Q ss_pred cccceeEEEc
Q psy2878 100 YKLNHWQFSD 109 (181)
Q Consensus 100 ~~~~~~~~~D 109 (181)
....|++.-
T Consensus 107 -k~gIpVlRH 115 (190)
T KOG2961|consen 107 -KIGIPVLRH 115 (190)
T ss_pred -hhCCceEee
Confidence 455666653
No 262
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=47.67 E-value=72 Score=20.30 Aligned_cols=57 Identities=12% Similarity=-0.031 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 64 YNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 64 l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
.++..+.+++..+.++.|..|-++...+-.......++.++..+. ...++.+.-|..
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~-s~~eLG~a~G~~ 72 (82)
T PRK13602 16 TKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD-SMKKLGKACGIE 72 (82)
T ss_pred HHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC-CHHHHHHHHCCC
Confidence 455666677667888888888655554444333223477776555 568888888753
No 263
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=46.58 E-value=32 Score=27.06 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=21.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN 72 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~ 72 (181)
.||+. ++|....|||.|-.+.=.|-.....|.
T Consensus 57 ~Gk~~-v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPE-VIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCeeE-EEEEecccCccchhhHHHHHHHHHhcC
Confidence 47754 556668899999887655555555555
No 264
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=45.60 E-value=55 Score=21.47 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 59 TEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 59 ~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
...+.+.++.++++++|+.++.+|......++.+.++.
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~ 61 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL 61 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc
Confidence 45567778888888889999999998888888888775
No 265
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=45.50 E-value=30 Score=21.67 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=21.6
Q ss_pred ceeeEEEEcCCCcEEEEEeccCCCCCC-HHHHHHHHHhhcc
Q psy2878 127 ALRATFIFDPQNIIQHITVNNLNVGRN-PIETLRILDAIQT 166 (181)
Q Consensus 127 ~~p~~~liD~~g~i~~~~~~~~~~~~~-~~~ll~~l~~l~~ 166 (181)
..--.+-||++|+|....+...+-... -+.++++|+....
T Consensus 27 ~~~V~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai~~~~p 67 (85)
T PF13103_consen 27 SVTVRITIDPDGRVISVRIVKSSGNPAFDAAVRRAIRRASP 67 (85)
T ss_dssp -EEEEEEE-TTSBEEEEEEEE--S-HHHHHHHHHHHHHH-B
T ss_pred EEEEEEEECCCCCEEEEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 344678999999997555422222222 3557777775543
No 266
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=45.31 E-value=48 Score=23.31 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.8
Q ss_pred eEEEEcCCCcEEEEEe
Q psy2878 130 ATFIFDPQNIIQHITV 145 (181)
Q Consensus 130 ~~~liD~~g~i~~~~~ 145 (181)
.++++|++|++++...
T Consensus 52 ~~~~~d~~g~~~~~~~ 67 (161)
T PF05228_consen 52 LIFILDPDGRVLYSSS 67 (161)
T ss_pred EEEEEcCCCCEEEEec
Confidence 7899999999999443
No 267
>PRK06683 hypothetical protein; Provisional
Probab=45.17 E-value=80 Score=20.13 Aligned_cols=56 Identities=7% Similarity=-0.050 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 65 NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 65 ~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
.+..+..+...+.++.|..|-++...+-.......+++++..+. ...++.+.-|..
T Consensus 17 ~~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~-t~~eLG~A~G~~ 72 (82)
T PRK06683 17 KRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE-SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC-CHHHHHHHhCCc
Confidence 34555666667888999988766554443333233477775554 578888888864
No 268
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=44.95 E-value=1.4e+02 Score=23.03 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 65 NKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 65 ~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
.+..++++++|+.|+..|--+......+.++.
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l 56 (272)
T PRK15126 25 LSTLARLRERDITLTFATGRHVLEMQHILGAL 56 (272)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc
Confidence 34555667789999888888877777777766
No 269
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=43.39 E-value=1e+02 Score=22.02 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 61 ~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
+..|.++.+++++.|+.++.+..++.+.+.++++++
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 87 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEY 87 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhc
Confidence 567888999999999999999999999999998887
No 270
>KOG2603|consensus
Probab=43.32 E-value=1.8e+02 Score=23.76 Aligned_cols=100 Identities=11% Similarity=0.246 Sum_probs=55.5
Q ss_pred eEEEEEeeC----CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEE-EcCCchHHHH
Q psy2878 43 WKIFYFYPK----DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQF-SDTNGSLIDQ 117 (181)
Q Consensus 43 ~~ll~F~~~----~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~ 117 (181)
+.++++|.+ ..|+.|.....++.-+.+-++..+-. .+. . .+-|-.+ .|...++.++
T Consensus 61 ys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~-----sn~----------t----klFF~~Vd~~e~p~~Fq~ 121 (331)
T KOG2603|consen 61 YSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPF-----SNG----------T----KLFFCMVDYDESPQVFQQ 121 (331)
T ss_pred eEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCC-----CCc----------c----eEEEEEEeccccHHHHHH
Confidence 555666533 34888877666666666665543211 000 0 1122222 2345678888
Q ss_pred hCCCCCCCcceeeEEEEcCC-CcEEEEEe-ccCCCCCCHHHHHHHHHhhcc
Q psy2878 118 LGIRHETGVALRATFIFDPQ-NIIQHITV-NNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~-g~i~~~~~-~~~~~~~~~~~ll~~l~~l~~ 166 (181)
|++. ..|+.+++.|. |....... +.......+|++.+.++....
T Consensus 122 l~ln-----~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 122 LNLN-----NVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred hccc-----CCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 8886 67888888655 55553222 122234558888888876543
No 271
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=43.25 E-value=1e+02 Score=20.67 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 65 NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 65 ~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
.+..+..+...+.+|.++.|..++.++-..+....++.++..+ -...++...+|-
T Consensus 23 ~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~-~t~~eLg~a~Gk 77 (104)
T PRK05583 23 NKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEG-YSKEELGNAIGR 77 (104)
T ss_pred HHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe-cCHHHHHHHhCC
Confidence 4455666666789999999876655554443322346666544 346788888883
No 272
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=42.59 E-value=1e+02 Score=20.82 Aligned_cols=36 Identities=8% Similarity=-0.059 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCC--------HHHHHHHHHHc
Q psy2878 61 ISEYNKLVKDFNERNAILLGGSSDN--------EFVKLAWRREN 96 (181)
Q Consensus 61 ~~~l~~l~~~~~~~~~~vi~Is~d~--------~~~~~~~~~~~ 96 (181)
.+...++.+.+++.|+.++.+|..+ .+...+..+++
T Consensus 27 ~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~ 70 (132)
T TIGR01662 27 YPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL 70 (132)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC
Confidence 4666778888888899999999877 55566666665
No 273
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=42.37 E-value=35 Score=24.30 Aligned_cols=35 Identities=17% Similarity=0.438 Sum_probs=25.0
Q ss_pred CCCCCCChh-------HHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 51 KDFTFVCPT-------EISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 51 ~~~cp~C~~-------~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
++.|.+|+. .-.+++++.++|...++.++.=+.|.
T Consensus 37 ~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~aea 78 (150)
T PF04723_consen 37 STECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAEA 78 (150)
T ss_pred eeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCCh
Confidence 677988865 34567778888887787666656664
No 274
>KOG1752|consensus
Probab=41.52 E-value=1.1e+02 Score=20.58 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=19.5
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+++|++- .++||.|.. ++++... .++....+-.|.
T Consensus 14 ~~VVifS--Ks~C~~c~~----~k~ll~~---~~v~~~vvELD~ 48 (104)
T KOG1752|consen 14 NPVVIFS--KSSCPYCHR----AKELLSD---LGVNPKVVELDE 48 (104)
T ss_pred CCEEEEE--CCcCchHHH----HHHHHHh---CCCCCEEEEccC
Confidence 4455543 789999975 3344333 455555555443
No 275
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=40.77 E-value=47 Score=22.33 Aligned_cols=62 Identities=8% Similarity=-0.045 Sum_probs=33.3
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe--cC--CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS--SD--NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is--~d--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+|....|..|+..+ +.++++++.+..+. -+ +.+.+..|+... +..+.-+....+..++..+.
T Consensus 3 iy~~~~C~t~rkA~-------~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~----~~~~~~lin~~~~~y~~l~~ 68 (112)
T cd03034 3 IYHNPRCSKSRNAL-------ALLEEAGIEPEIVEYLKTPPTAAELRELLAKL----GISPRDLLRTKEAPYKELGL 68 (112)
T ss_pred EEECCCCHHHHHHH-------HHHHHCCCCeEEEecccCCcCHHHHHHHHHHc----CCCHHHHHhcCCchHHHcCC
Confidence 44456688787543 34555566555554 33 356777777765 43333333334455555443
No 276
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=40.62 E-value=39 Score=27.33 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=16.1
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhc
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNER 74 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~ 74 (181)
+...|||.|- ....++.+.+.+.+.
T Consensus 16 ~~~~~CpGCg-~~~i~~~i~~al~~l 40 (301)
T PRK05778 16 LPTTWCPGCG-NFGILNAIIQALAEL 40 (301)
T ss_pred CCCCCCCCCC-ChHHHHHHHHHHHHh
Confidence 3456999994 455566666666553
No 277
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=40.31 E-value=21 Score=19.30 Aligned_cols=14 Identities=14% Similarity=0.631 Sum_probs=9.8
Q ss_pred EEEeeCCCCCCChhHHH
Q psy2878 46 FYFYPKDFTFVCPTEIS 62 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~ 62 (181)
++|| +|+.|..++.
T Consensus 21 ~y~f---CC~tC~~~fk 34 (37)
T PF08394_consen 21 VYYF---CCPTCLSQFK 34 (37)
T ss_pred EEEE---ECHHHHHHHH
Confidence 4555 8999987764
No 278
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=40.27 E-value=1.4e+02 Score=21.41 Aligned_cols=26 Identities=4% Similarity=-0.174 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 53 FTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 53 ~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+||.|...... +++.++.+--+..+.
T Consensus 15 t~~~C~~ak~i-------L~~~~V~~~e~DVs~ 40 (147)
T cd03031 15 TFEDCNNVRAI-------LESFRVKFDERDVSM 40 (147)
T ss_pred cChhHHHHHHH-------HHHCCCcEEEEECCC
Confidence 79999644433 334466665555543
No 279
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.08 E-value=1.5e+02 Score=24.48 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=59.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH-----HHHHHHHHHcCCCcccceeE---EEcCC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE-----FVKLAWRRENSNLYKLNHWQ---FSDTN 111 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~-----~~~~~~~~~~~~~~~~~~~~---~~D~~ 111 (181)
.+|+.++.|. +.....-+ ..+.++...|.+.|..++....|.. +.++.|.++. +.+..- -+||.
T Consensus 136 ~~~p~Vil~v-GVNG~GKT---TTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~~G~DpA 207 (340)
T COG0552 136 EKKPFVILFV-GVNGVGKT---TTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGKEGADPA 207 (340)
T ss_pred CCCcEEEEEE-ecCCCchH---hHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccCCCCCcH
Confidence 4578888887 44343333 3456777778888999999998873 4556677765 443222 23333
Q ss_pred chHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 112 GSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 112 ~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
.-+.+...--...++ -.+|||--||.-- ..+-...++++.+.++
T Consensus 208 aVafDAi~~Akar~~---DvvliDTAGRLhn----k~nLM~EL~KI~rV~~ 251 (340)
T COG0552 208 AVAFDAIQAAKARGI---DVVLIDTAGRLHN----KKNLMDELKKIVRVIK 251 (340)
T ss_pred HHHHHHHHHHHHcCC---CEEEEeCcccccC----chhHHHHHHHHHHHhc
Confidence 222222111011223 4689999998742 2222334444444444
No 280
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=40.08 E-value=1.6e+02 Score=22.07 Aligned_cols=94 Identities=13% Similarity=0.041 Sum_probs=53.3
Q ss_pred cCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC-CHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 36 ESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD-NEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 36 l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
-..|-|+++ |...-|-..+.....|.+.+++++..|..++....= +...++.+-... ....+++++..--
T Consensus 26 ~~NF~g~~i----Y~~~~c~l~~~aA~aL~~a~~~l~~~G~~L~I~D~yRP~~aq~~~w~~~-----~~~~yVA~p~~~S 96 (184)
T PRK10178 26 ADNLTGKPI----YREARCLLHKDAEAALRKAVSIAQLAGLTLRIYDAYRPQQAQQVLWDAC-----PDPQYVADLGRGS 96 (184)
T ss_pred CCCcCCCcc----ccCCeEEECHHHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHhC-----CCcCeeeCCCCCC
Confidence 345678866 434445555666788999999999989888777643 333444433332 2234555543111
Q ss_pred HHHhCCCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 115 IDQLGIRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 115 ~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
. +..|... =.-|+|.+|+.+....
T Consensus 97 ~------HsrG~AV-DLTL~d~~G~~ldMGt 120 (184)
T PRK10178 97 N------HSRGTAI-DLTLVDAHGNILDMGT 120 (184)
T ss_pred C------CCCceEE-EEEEECCCCCEecCCC
Confidence 1 2222211 2347888898876653
No 281
>PRK10976 putative hydrolase; Provisional
Probab=40.01 E-value=1.7e+02 Score=22.46 Aligned_cols=32 Identities=9% Similarity=0.003 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 65 NKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 65 ~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
.+..++++++|+.++..|--+......+.++.
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l 56 (266)
T PRK10976 25 KETLKLLTARGIHFVFATGRHHVDVGQIRDNL 56 (266)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc
Confidence 34555677789999888877777777777765
No 282
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=39.76 E-value=74 Score=18.16 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=12.6
Q ss_pred EEEEcCCCcEEEEEe
Q psy2878 131 TFIFDPQNIIQHITV 145 (181)
Q Consensus 131 ~~liD~~g~i~~~~~ 145 (181)
.|.|++||+|.....
T Consensus 2 ~~~I~~dG~V~~~v~ 16 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVE 16 (48)
T ss_pred EEEECCCcEEEEEEE
Confidence 378999999988875
No 283
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=39.41 E-value=18 Score=22.42 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=13.6
Q ss_pred eeeEEEEcCCCcEEEEE
Q psy2878 128 LRATFIFDPQNIIQHIT 144 (181)
Q Consensus 128 ~p~~~liD~~g~i~~~~ 144 (181)
....||+|++|+++++-
T Consensus 53 ~g~~~ivd~~G~ii~hp 69 (81)
T PF02743_consen 53 NGYAFIVDKNGTIIAHP 69 (81)
T ss_dssp TBEEEEEETTSBBCE-S
T ss_pred CEEEEEEECCCCEEEeC
Confidence 34789999999999876
No 284
>PRK07714 hypothetical protein; Provisional
Probab=39.11 E-value=1.1e+02 Score=20.08 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 64 YNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 64 l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
..+..+..++..+.++.+..|-.+...+-.......++.++..+ ....++.+.+|-
T Consensus 23 ~~~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~-~sk~eLG~a~Gk 78 (100)
T PRK07714 23 EELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKV-ENRQQLGHAIGK 78 (100)
T ss_pred HHHHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe-CCHHHHHHHhCC
Confidence 34555666666788899988875555443433222347776544 457889999885
No 285
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=38.66 E-value=87 Score=19.84 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=10.1
Q ss_pred eeEEEEcCCCcEEEE
Q psy2878 129 RATFIFDPQNIIQHI 143 (181)
Q Consensus 129 p~~~liD~~g~i~~~ 143 (181)
...++.||+|.++..
T Consensus 93 ~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 93 RSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEE-TTS-EEEE
T ss_pred EEEEEECCCCCEEEe
Confidence 478899999988753
No 286
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=38.57 E-value=35 Score=24.76 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=29.4
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
.||+..-||.|-...+.|.++.+++.+-.+....++..+.
T Consensus 3 ~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 3 EFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 3444777999999999999999999544566666665544
No 287
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=38.39 E-value=1.2e+02 Score=21.73 Aligned_cols=41 Identities=7% Similarity=-0.026 Sum_probs=27.7
Q ss_pred EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 44 KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 44 ~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
.=+.+|....|.-|...+ +.++..|++|=.+..++.+.+++
T Consensus 26 ~~~~vyksPnCGCC~~w~-------~~mk~~Gf~Vk~~~~~d~~alK~ 66 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWA-------QHMKANGFEVKVVETDDFLALKR 66 (149)
T ss_pred eeEEEEeCCCCccHHHHH-------HHHHhCCcEEEEeecCcHHHHHH
Confidence 335555588898887555 33446688888888887766544
No 288
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=38.31 E-value=43 Score=23.81 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=26.9
Q ss_pred cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 76 AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 76 ~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
+.++||..++.++..+++.+. -++++++.|.++.+
T Consensus 28 lvLvGV~~~Dt~~~a~~l~~K----i~~lRiF~D~~gKm 62 (145)
T COG1490 28 LVLVGVTHDDTEEDADYLAEK----ILNLRIFEDEEGKM 62 (145)
T ss_pred EEEEeecCCCCHHHHHHHHHH----HhceEeecCccccc
Confidence 477899988766666767765 77899999977664
No 289
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=38.19 E-value=1.6e+02 Score=23.14 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=22.8
Q ss_pred EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 44 KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 44 ~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
.||--|.+-.|..|+.--..|.++. ++ -.++++|.
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a----~~-~~vlALsy 77 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLA----DD-PGVLALSY 77 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhc----cC-CCEEEEEE
Confidence 5555665777999987776665553 33 23788875
No 290
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.75 E-value=2e+02 Score=26.05 Aligned_cols=103 Identities=10% Similarity=-0.024 Sum_probs=52.1
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHH-H--HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISE-Y--NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~-l--~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
+.-.+||++|.-- .+||-=|..+..+ + .++.+ + .|-.+|.|-+|-.+. .-+.+. -..
T Consensus 39 A~~edkPIflSIG-ys~CHWChVM~~ESf~d~eiA~-~--lN~~FV~IKVDREER--PDvD~~--------------Ym~ 98 (667)
T COG1331 39 AKEEDKPILLSIG-YSTCHWCHVMAHESFEDPEIAA-I--LNENFVPVKVDREER--PDVDSL--------------YMN 98 (667)
T ss_pred HHHhCCCEEEEec-cccccchHHHhhhcCCCHHHHH-H--HHhCceeeeEChhhc--cCHHHH--------------HHH
Confidence 3446788888876 5577777554322 1 11111 1 134566777664221 000000 012
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCC----CCHHHHHHHHHh
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVG----RNPIETLRILDA 163 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~----~~~~~ll~~l~~ 163 (181)
+++... .+| -+|-++++-|||+..+...+-.... .-..++++.|..
T Consensus 99 ~~q~~t---G~G-GWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~ 148 (667)
T COG1331 99 ASQAIT---GQG-GWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRE 148 (667)
T ss_pred HHHHhc---cCC-CCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHH
Confidence 222222 223 3779999999999999887532221 234555555543
No 291
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=37.31 E-value=1.2e+02 Score=21.96 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEEecCC-HHHHHHHHHHc
Q psy2878 59 TEISEYNKLVKDFNERNAILLGGSSDN-EFVKLAWRREN 96 (181)
Q Consensus 59 ~~~~~l~~l~~~~~~~~~~vi~Is~d~-~~~~~~~~~~~ 96 (181)
.-.+.+.++.+.+++.|+.++.+|..+ ......+.+..
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~ 81 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL 81 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc
Confidence 446778888899999999999999877 34444444443
No 292
>PRK06126 hypothetical protein; Provisional
Probab=37.00 E-value=1.9e+02 Score=25.04 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=13.2
Q ss_pred eEEEEcCCCcEEEEE
Q psy2878 130 ATFIFDPQNIIQHIT 144 (181)
Q Consensus 130 ~~~liD~~g~i~~~~ 144 (181)
..+||-|||.|.++.
T Consensus 514 ~avLvRPD~~vawr~ 528 (545)
T PRK06126 514 DLVLVRPDQHVAWRG 528 (545)
T ss_pred CEEEECCCCceeecc
Confidence 578999999999986
No 293
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=36.37 E-value=1.4e+02 Score=20.38 Aligned_cols=56 Identities=16% Similarity=-0.001 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCcEEEEEecCCHH-HHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 64 YNKLVKDFNERNAILLGGSSDNEF-VKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 64 l~~l~~~~~~~~~~vi~Is~d~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
.++..+.++...+.++.|+.|... ........+....++++... ....++.+..|.
T Consensus 31 ~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~-~sk~eLG~a~Gk 87 (117)
T TIGR03677 31 TNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV-KKKEDLGAAAGL 87 (117)
T ss_pred HHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe-CCHHHHHHHhCC
Confidence 344555566656888888887632 23222222222237786443 457899999885
No 294
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=36.28 E-value=36 Score=21.48 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.0
Q ss_pred eEEEEcCCCcEEEEEe
Q psy2878 130 ATFIFDPQNIIQHITV 145 (181)
Q Consensus 130 ~~~liD~~g~i~~~~~ 145 (181)
.++++|++|+|++...
T Consensus 7 ~i~v~D~~~~i~~~N~ 22 (110)
T PF08448_consen 7 GIFVIDPDGRIVYANQ 22 (110)
T ss_dssp EEEEEETTSBEEEE-H
T ss_pred eeEEECCCCEEEEEHH
Confidence 4788999999999874
No 295
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=36.21 E-value=1.4e+02 Score=20.50 Aligned_cols=36 Identities=8% Similarity=-0.066 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 61 ~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
.+.+.++...+++.|+.++.+|..+........+++
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~ 114 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL 114 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT
T ss_pred hhhhhhhhhhcccccceeEEeecCCccccccccccc
Confidence 345666777788789999999998887777777766
No 296
>KOG0913|consensus
Probab=35.40 E-value=4.9 Score=31.16 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=19.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKD 70 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~ 70 (181)
.|-+++ .|+ +.|||.|..-.+.+.+...-
T Consensus 39 ~gewmi-~~~-ap~~psc~~~~~~~~~~a~~ 67 (248)
T KOG0913|consen 39 TGEWMI-EFG-APWCPSCSDLIPHLENFATV 67 (248)
T ss_pred chHHHH-Hhc-CCCCccccchHHHHhccCCc
Confidence 455554 444 88999998777766655443
No 297
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=35.33 E-value=1.7e+02 Score=21.16 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 61 ~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
.+...++.+++++.|+.+..+|-|........+++.
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l 164 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL 164 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhccCcceeeeecccccccccccccc
Confidence 556677888889999999999999988888888876
No 298
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=35.07 E-value=66 Score=21.29 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=33.5
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+.+||.| +..+-.-..-+..|.+++++++.+|+.++.++..+
T Consensus 49 ~~vIlD~--s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 49 KNVILDM--SGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp SEEEEEE--TTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred eEEEEEE--EeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5777777 55555566778899999999999999999888754
No 299
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=34.74 E-value=53 Score=23.85 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=21.9
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHH
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFN 72 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~ 72 (181)
|.||.-..||.|-.-.+.|.++.+++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 445557789999888999999998883
No 300
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=34.38 E-value=1.3e+02 Score=19.66 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=28.9
Q ss_pred EEEEecCCHHHHHHHHHHcCCCccccee---EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEE
Q psy2878 78 LLGGSSDNEFVKLAWRRENSNLYKLNHW---QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHI 143 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~ 143 (181)
.+.+.+++.++..+.+++. ++++. +.. ....+.+| .+..++.||+|.++..
T Consensus 58 ~~~~~v~did~~~~~l~~~----G~~~~~~~~~~---~~~~~~~g--------~r~f~~~DPdGn~~~~ 111 (113)
T cd08356 58 MLHLEVDDLEAYYEHIKAL----GLPKKFPGVKL---PPITQPWW--------GREFFLHDPSGVLWHI 111 (113)
T ss_pred EEEEEECCHHHHHHHHHHc----CCcccccceec---CccccCCC--------cEEEEEECCCccEEEe
Confidence 4567777766666656654 54421 111 11111222 2478999999998754
No 301
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=34.00 E-value=46 Score=20.06 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=18.7
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|+.+.-||.|.++- -.+.+++.++.++
T Consensus 7 FIAGA~CP~C~~~D-----tl~mW~En~ve~v 33 (66)
T COG3529 7 FIAGAVCPACQAQD-----TLAMWRENNVEIV 33 (66)
T ss_pred hhccCCCcccchhh-----HHHHHHhcCCceE
Confidence 66678899997542 3445777777766
No 302
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=33.30 E-value=81 Score=21.27 Aligned_cols=42 Identities=5% Similarity=-0.162 Sum_probs=25.1
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe--cCC--HHHHHHHHHHc
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS--SDN--EFVKLAWRREN 96 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is--~d~--~~~~~~~~~~~ 96 (181)
+|....|..|+... +.++++|+.+..+. .++ .+.++.|++..
T Consensus 3 iy~~~~C~t~rkA~-------~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 3 IYHNPRCSKSRNTL-------ALLEDKGIEPEVVKYLKNPPTKSELEAIFAKL 48 (114)
T ss_pred EEECCCCHHHHHHH-------HHHHHCCCCeEEEeccCCCcCHHHHHHHHHHc
Confidence 45466688887544 33444566555554 333 56777777765
No 303
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=32.78 E-value=47 Score=26.80 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=23.7
Q ss_pred eEEEEcCCCcEEEEEeccCCCCCC---HHHHHHHHH
Q psy2878 130 ATFIFDPQNIIQHITVNNLNVGRN---PIETLRILD 162 (181)
Q Consensus 130 ~~~liD~~g~i~~~~~~~~~~~~~---~~~ll~~l~ 162 (181)
..|+||++|+++|....+...... .+++.+.+.
T Consensus 106 ~vf~vd~~G~~vy~~~~d~~t~~~~~~~~~L~~~i~ 141 (295)
T COG3322 106 GVFVVDPSGKLVYSKLVDQETATELPLPESLLEDIR 141 (295)
T ss_pred EEEEECCCCCEEEEeeeccccccccCCcHHHHHHHh
Confidence 789999999999999854333222 466666666
No 304
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=32.49 E-value=43 Score=21.25 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=14.2
Q ss_pred eEEEEcCCCcEEEEEe
Q psy2878 130 ATFIFDPQNIIQHITV 145 (181)
Q Consensus 130 ~~~liD~~g~i~~~~~ 145 (181)
..+++|++|+|++...
T Consensus 13 ~i~~~d~~g~I~~~N~ 28 (113)
T PF00989_consen 13 GIFVIDEDGRILYVNQ 28 (113)
T ss_dssp EEEEEETTSBEEEECH
T ss_pred eEEEEeCcCeEEEECH
Confidence 5889999999999884
No 305
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.14 E-value=70 Score=21.43 Aligned_cols=30 Identities=7% Similarity=-0.113 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 62 SEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 62 ~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
+++.+..+..+++|+.+|+|+.++...+.+
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s~la~ 89 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGSTLAR 89 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChHHH
Confidence 445567777788888999998876555444
No 306
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.10 E-value=1.6e+02 Score=19.71 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 62 SEYNKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 62 ~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
+++.+..+..+++|+.+|+|+.+.+ +.++..+.
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~ 89 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGGK--LLEMAREH 89 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHc
Confidence 3444555566778999999997653 55555543
No 307
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=31.63 E-value=2.1e+02 Score=21.08 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEE
Q psy2878 64 YNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHI 143 (181)
Q Consensus 64 l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~ 143 (181)
..+..++++++|+.++..|--+......+..+. +...++++. + ..++.+++|++++.
T Consensus 20 ~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~----~~~~~~I~~------------------n-Ga~i~~~~~~~l~~ 76 (254)
T PF08282_consen 20 TIEALKELQEKGIKLVIATGRSYSSIKRLLKEL----GIDDYFICS------------------N-GALIDDPKGKILYE 76 (254)
T ss_dssp HHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHT----THCSEEEEG------------------G-GTEEEETTTEEEEE
T ss_pred HHHHHHhhcccceEEEEEccCcccccccccccc----cchhhhccc------------------c-cceeeecccccchh
Confidence 334445566689998888888888888878776 555344331 1 12236888998877
Q ss_pred EeccCCCCCCHHHHHHHHHhh
Q psy2878 144 TVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 144 ~~~~~~~~~~~~~ll~~l~~l 164 (181)
.. .+ .....++++.+.+.
T Consensus 77 ~~--i~-~~~~~~i~~~~~~~ 94 (254)
T PF08282_consen 77 KP--ID-SDDVKKILKYLKEH 94 (254)
T ss_dssp ES--B--HHHHHHHHHHHHHT
T ss_pred hh--ee-ccchhheeehhhhc
Confidence 73 22 23444555555443
No 308
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=31.53 E-value=2.7e+02 Score=22.22 Aligned_cols=60 Identities=10% Similarity=0.019 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEc-----CCchHHHHhCCC
Q psy2878 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSD-----TNGSLIDQLGIR 121 (181)
Q Consensus 61 ~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~~~~gv~ 121 (181)
.+-++.+..+|.+++..+|-|+.++-..+....+.. ....-.|.+++| .+..-.+.+...
T Consensus 99 SSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~L-r~~~~kFIlFcDDLSFe~gd~~yK~LKs~ 163 (287)
T COG2607 99 SSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELL-RARPEKFILFCDDLSFEEGDDAYKALKSA 163 (287)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHH-hcCCceEEEEecCCCCCCCchHHHHHHHH
Confidence 345677889999999999999988766665555543 223667889988 234455555543
No 309
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=31.24 E-value=2.4e+02 Score=21.54 Aligned_cols=39 Identities=10% Similarity=0.225 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 58 PTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 58 ~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
....+.+.++.+++.++|+.++..|.-+....+.+..++
T Consensus 20 ~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~ 58 (249)
T TIGR01485 20 NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQK 58 (249)
T ss_pred hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcC
Confidence 456788888888888889988888888888888876655
No 310
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.22 E-value=2.3e+02 Score=21.43 Aligned_cols=26 Identities=4% Similarity=0.002 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 53 FTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 53 ~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
||.+|.... |. .+.+.|+.+++.-.+
T Consensus 11 CCAPcs~y~--le----~l~~~~~~i~~yFYN 36 (204)
T COG1636 11 CCAPCSGYV--LE----KLRDSGIKITIYFYN 36 (204)
T ss_pred ecCCCcHHH--HH----HHHhcCcceEEEEeC
Confidence 899996543 22 233335555544433
No 311
>KOG0780|consensus
Probab=30.69 E-value=3.5e+02 Score=23.21 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=23.7
Q ss_pred CCCCeEEEEEeeCC---CCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 39 FPGKWKIFYFYPKD---FTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 39 ~~gk~~ll~F~~~~---~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
-++|+.|+.|..-- -+..|. ++.-.|+++|..+..|..|.
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~-------KlA~y~kkkG~K~~LvcaDT 139 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCT-------KLAYYYKKKGYKVALVCADT 139 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHH-------HHHHHHHhcCCceeEEeecc
Confidence 36788888886211 123343 34444666777777777765
No 312
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=30.15 E-value=1e+02 Score=17.46 Aligned_cols=34 Identities=0% Similarity=-0.095 Sum_probs=18.8
Q ss_pred eEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 130 ATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 130 ~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
...|.+.||+|+... .........+.-++.|++.
T Consensus 7 ~f~L~a~ng~viass-e~Y~sk~~a~~~I~~Vk~~ 40 (49)
T PF07411_consen 7 RFRLKAGNGEVIASS-EGYSSKADAEKGIESVKKN 40 (49)
T ss_dssp EEEEE-TTS-EEEEB-EEBSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEec-CCcCCHHHHHHHHHHHHHh
Confidence 566889999999944 3344444444555555443
No 313
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=29.63 E-value=55 Score=20.27 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.0
Q ss_pred eEEEEcCCCcEEEEEe
Q psy2878 130 ATFIFDPQNIIQHITV 145 (181)
Q Consensus 130 ~~~liD~~g~i~~~~~ 145 (181)
..+++|++|+|++...
T Consensus 3 ~i~i~d~~g~i~~~N~ 18 (104)
T PF13426_consen 3 GIFILDPDGRILYVNP 18 (104)
T ss_dssp EEEEEETTSBEEEE-H
T ss_pred EEEEECCcCcEEehhH
Confidence 4789999999999874
No 314
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=29.44 E-value=1.2e+02 Score=25.23 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=21.1
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
|.+..+..||+|..-...+.+..+-.+..|+.+...
T Consensus 49 I~lisGPGCPVCVtp~~~ID~ai~LA~~~~vil~Tf 84 (355)
T PF01924_consen 49 IELISGPGCPVCVTPQGDIDAAIELAKRPGVILATF 84 (355)
T ss_dssp EEEEE-S--TTTTS-HHHHHHHHHHHTT--EEEEE-
T ss_pred cEEecCCCCccEECcHHHHHHHHHHhCCCCeEEEeC
Confidence 455568899999998888888877665566555444
No 315
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=29.40 E-value=93 Score=17.48 Aligned_cols=17 Identities=6% Similarity=-0.324 Sum_probs=10.1
Q ss_pred eeCCCCCCChhHHHHHH
Q psy2878 49 YPKDFTFVCPTEISEYN 65 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~ 65 (181)
|...+||.|......|.
T Consensus 4 y~~~~~~~~~~~~~~l~ 20 (71)
T cd00570 4 YYFPGSPRSLRVRLALE 20 (71)
T ss_pred EeCCCCccHHHHHHHHH
Confidence 33556999975544443
No 316
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=29.40 E-value=2.5e+02 Score=21.26 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 64 YNKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 64 l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
-.+..+++++.|+.++..|.-+......+.++.
T Consensus 20 ~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~l 52 (225)
T TIGR02461 20 AREALEELKDLGFPIVFVSSKTRAEQEYYREEL 52 (225)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc
Confidence 345556677789999999988888888887776
No 317
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=29.25 E-value=1.8e+02 Score=22.92 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEc
Q psy2878 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSD 109 (181)
Q Consensus 61 ~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D 109 (181)
...++.+..+|.+.|+.+|-|+.+.-..+.+-..... .....|.++.|
T Consensus 66 SSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~-~~~~kFIlf~D 113 (249)
T PF05673_consen 66 SSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLR-DRPYKFILFCD 113 (249)
T ss_pred HHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHh-cCCCCEEEEec
Confidence 4456678899999999999999876544444343321 12678999998
No 318
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=28.97 E-value=1.1e+02 Score=20.21 Aligned_cols=50 Identities=12% Similarity=-0.092 Sum_probs=32.1
Q ss_pred HHHHHHHhcCcEEEEEecC----CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 66 KLVKDFNERNAILLGGSSD----NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 66 ~l~~~~~~~~~~vi~Is~d----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+..+.++++|+.+-.+..- +.+.+.+++... +..+.-+...++...+.++
T Consensus 11 ka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~----~~~~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 11 KALKWLEENGIEYEFIDYKKEPLSREELRELLSKL----GNGPDDLINTRSKTYKELG 64 (110)
T ss_dssp HHHHHHHHTT--EEEEETTTS---HHHHHHHHHHH----TSSGGGGB-TTSHHHHHTT
T ss_pred HHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHh----cccHHHHhcCccchHhhhh
Confidence 4445566778877777752 366778888876 6556666667778888887
No 319
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=28.63 E-value=1.8e+02 Score=19.38 Aligned_cols=30 Identities=13% Similarity=0.003 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 62 SEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 62 ~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
+.+.++.+..+++|+.+++|+.+....+.+
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~ 103 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSPLAK 103 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChhHH
Confidence 344555666777788888888776544433
No 320
>KOG3414|consensus
Probab=28.38 E-value=2.2e+02 Score=20.14 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=30.4
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.|.+||-|- -.|-|.|..+=-.|.+......+- +.+..+..|.
T Consensus 23 ~rlvViRFG-r~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdide 65 (142)
T KOG3414|consen 23 ERLVVIRFG-RDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDIDE 65 (142)
T ss_pred ceEEEEEec-CCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecch
Confidence 367777776 678999988777788888777742 4455555564
No 321
>PRK07283 hypothetical protein; Provisional
Probab=28.29 E-value=1.8e+02 Score=19.10 Aligned_cols=54 Identities=19% Similarity=0.104 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 65 NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 65 ~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+..+..++..+.++.++.|..++.++-..+....++.++..+. ...++.+..|
T Consensus 24 ~~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~-t~~eLG~a~G 77 (98)
T PRK07283 24 ELVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVF-STLELSAAVG 77 (98)
T ss_pred HHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeC-CHHHHHHHhC
Confidence 44556666667889999988755554222211111366654333 4678888887
No 322
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=28.06 E-value=69 Score=20.29 Aligned_cols=34 Identities=12% Similarity=-0.055 Sum_probs=17.7
Q ss_pred ceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 127 ALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 127 ~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+.|...++|.+|+++-...- ...+.+++.+.|.+
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i---~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINI---EKWKTDEIEEFLNE 74 (78)
T ss_dssp ---EEEEE-SSS--SEEEE----SSSSHCHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEc---ccCCHHHHHHHHHH
Confidence 35899999999998766632 23455565555543
No 323
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.94 E-value=1.7e+02 Score=18.84 Aligned_cols=55 Identities=11% Similarity=-0.038 Sum_probs=29.7
Q ss_pred cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEE
Q psy2878 74 RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQH 142 (181)
Q Consensus 74 ~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~ 142 (181)
.|..-+++.+++.+++.++.++..+ .+ ..+...+.. ...| ....++.||+|..+-
T Consensus 69 ~g~~hi~f~v~~~~~v~~~~~~l~~-~g--~~~~~~~~~---~~~g--------~~~~~~~DPdG~~iE 123 (125)
T cd07241 69 TGWAHLAFSVGSKEAVDELTERLRA-DG--YLIIGEPRT---TGDG--------YYESVILDPEGNRIE 123 (125)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHH-CC--CEEEeCcee---cCCC--------eEEEEEECCCCCEEE
Confidence 3566688888776666565555411 13 233322210 0111 225678999999864
No 324
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=27.86 E-value=79 Score=25.30 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=14.6
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHh
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNE 73 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~ 73 (181)
++..|||.|- .-..|..+.+.+.+
T Consensus 6 ~~~~~CpGCg-~~~i~~~~~~a~~~ 29 (280)
T PRK11869 6 YDIAWCPGCG-NFGIRNALMKALSE 29 (280)
T ss_pred CCCCCCcCCC-CHHHHHHHHHHHHH
Confidence 4567999994 34444555555544
No 325
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.83 E-value=69 Score=21.50 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 61 ~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
.+.+.+..+..+++|+.+|+|+.++...+.+
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 3455566666777889999999876555444
No 326
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=27.71 E-value=86 Score=25.19 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=12.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHh
Q psy2878 52 DFTFVCPTEISEYNKLVKDFNE 73 (181)
Q Consensus 52 ~~cp~C~~~~~~l~~l~~~~~~ 73 (181)
.|||.|- ....|..+.+.+.+
T Consensus 2 ~~CpGCg-~~~i~~~~~~a~~~ 22 (287)
T TIGR02177 2 DWCPGCG-DFGILSALQRALAE 22 (287)
T ss_pred CcCCCCC-ChHHHHHHHHHHHH
Confidence 5999995 33344445444543
No 327
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=27.68 E-value=4e+02 Score=22.92 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 60 EISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 60 ~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
.+..|.++.+++++.|+.++...-++.+.+.++++++
T Consensus 53 l~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~ 89 (471)
T TIGR03556 53 LIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQL 89 (471)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHc
Confidence 4577889999999999999998888888888888775
No 328
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=27.56 E-value=88 Score=25.06 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=12.4
Q ss_pred CCCCCChhHHHHHHHHHHHHH
Q psy2878 52 DFTFVCPTEISEYNKLVKDFN 72 (181)
Q Consensus 52 ~~cp~C~~~~~~l~~l~~~~~ 72 (181)
.|||.|-... .++.+.+.+.
T Consensus 18 ~~CpGCg~~~-il~~l~~al~ 37 (286)
T PRK11867 18 RWCPGCGDGS-ILAALQRALA 37 (286)
T ss_pred CcCCCCCCHH-HHHHHHHHHH
Confidence 4999995433 5555555553
No 329
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=26.93 E-value=1.5e+02 Score=23.18 Aligned_cols=44 Identities=7% Similarity=0.059 Sum_probs=33.2
Q ss_pred HHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccc-eeEEEcCCch
Q psy2878 66 KLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLN-HWQFSDTNGS 113 (181)
Q Consensus 66 ~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~ 113 (181)
..+.++++.|+.||..|.-+..++..+.+.. ++. .|+++.....
T Consensus 30 pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l----~v~~~p~iaEnG~a 74 (274)
T COG3769 30 PVLLELKDAGVPVILCSSKTRAEMLYLQKSL----GVQGLPLIAENGAA 74 (274)
T ss_pred hHHHHHHHcCCeEEEeccchHHHHHHHHHhc----CCCCCceeecCCce
Confidence 4667788889999999999988888877776 555 7777654333
No 330
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=26.80 E-value=1.9e+02 Score=22.41 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=32.3
Q ss_pred chHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCH-HHHHHHHHhhc
Q psy2878 112 GSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNP-IETLRILDAIQ 165 (181)
Q Consensus 112 ~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~-~~ll~~l~~l~ 165 (181)
...++..|+. |. .--.|.||++|+|....+-..+....+ .+.+++++...
T Consensus 170 P~~A~~~g~~---G~-V~V~f~i~~~G~v~~v~v~~SSg~~~lD~aal~air~~~ 220 (244)
T COG0810 170 PAQARARGIE---GT-VKVKFTIDPDGNVTNVRVLKSSGSPALDRAALEAIRKWR 220 (244)
T ss_pred cHHHHhcCCC---ce-EEEEEEECCCCCEeeeEEeecCCcHHHHHHHHHHHHHhc
Confidence 3556666653 42 446899999999988876333333333 46777777654
No 331
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=26.55 E-value=1.4e+02 Score=21.56 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=40.3
Q ss_pred EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcC
Q psy2878 44 KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDT 110 (181)
Q Consensus 44 ~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~ 110 (181)
+|+.+- +---|.+......++++.+++.... ++||+..+-...+.|.++ ++|.++.|.
T Consensus 83 ~vVlmG-GLAMP~~~v~~e~v~~li~ki~~~~--iiGiCFms~F~kagW~~~------I~FD~iID~ 140 (147)
T PF09897_consen 83 VVVLMG-GLAMPKSGVTPEDVNELIKKISPKK--IIGICFMSMFEKAGWDDK------IDFDYIIDA 140 (147)
T ss_dssp EEEEEG-GGGSTTTS--HHHHHHHHHHHEEEE--EEEEEETTHHHHTTHHHH------S--SEEEEE
T ss_pred EEEEEc-ccccCCCCCCHHHHHHHHHHhCcCC--EEEEehHHHHHHcCCccc------cCccEEEee
Confidence 444443 5456777777788888888887654 999999999999999985 467766663
No 332
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=26.42 E-value=86 Score=22.49 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=21.8
Q ss_pred ccceeEEEcC---CchHHHHhCCCCCCCcceeeEEEEcCCCcEE
Q psy2878 101 KLNHWQFSDT---NGSLIDQLGIRHETGVALRATFIFDPQNIIQ 141 (181)
Q Consensus 101 ~~~~~~~~D~---~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~ 141 (181)
+.+|-...+. +-+..++-|+ +...+|+||+.|+|.
T Consensus 118 ~~~f~~~~gn~~~D~~~y~~~gi------~~~~i~~i~~~~~~~ 155 (157)
T smart00775 118 GNPFYAGFGNRITDVISYSAVGI------PPSRIFTINPKGEVH 155 (157)
T ss_pred CCCEEEEeCCCchhHHHHHHcCC------ChhhEEEECCCCccc
Confidence 4455544443 2444444444 556899999999885
No 333
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=26.37 E-value=2.6e+02 Score=20.29 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhcCc-EEEEEec
Q psy2878 61 ISEYNKLVKDFNERNA-ILLGGSS 83 (181)
Q Consensus 61 ~~~l~~l~~~~~~~~~-~vi~Is~ 83 (181)
..+...-+++..++|. -+|.|..
T Consensus 78 ~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 78 YGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred cccHHHHHHHHHHCCCeEEEEEeC
Confidence 3345556666666775 5556654
No 334
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=26.12 E-value=2e+02 Score=20.89 Aligned_cols=43 Identities=5% Similarity=-0.105 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 65 NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 65 ~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
+++.+.|++.|..++.+|....+.+.++.+.. .+ ...++..+.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l---~~-k~~vl~G~S 44 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELL---KG-KTSVLLGQS 44 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHH---TT-SEEEEECST
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHh---cC-CEEEEECCC
Confidence 45677888889999999987666666655544 13 566666544
No 335
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=26.01 E-value=1.2e+02 Score=21.05 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=20.4
Q ss_pred eEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 130 ATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 130 ~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
+.+++|.+|+++....+..........+.+.+
T Consensus 4 ~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~ 35 (141)
T PF01217_consen 4 AILILNSQGKRILSKYYRDVSEEERQKLFEKF 35 (141)
T ss_dssp EEEEEETTSEEEEEEESSTSTSHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEehhcCCccHHHHHHHHHHH
Confidence 68999999997777765333333334455444
No 336
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=25.94 E-value=3.4e+02 Score=21.56 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCcEEEEEecCC-HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEE
Q psy2878 64 YNKLVKDFNERNAILLGGSSDN-EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQH 142 (181)
Q Consensus 64 l~~l~~~~~~~~~~vi~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~ 142 (181)
++.....++...+.++.|..|- +.+...|....-...++++-++.+ ..++.+..|-- .++++.|-..
T Consensus 137 ~n~VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVkt-KaeLG~AIGkK------travVAItD~----- 204 (263)
T PTZ00222 137 LQEVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKD-MARLGDAIGRK------TATCVAITDV----- 204 (263)
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECC-HHHHHHHHCCC------CCeEEEEeeC-----
Confidence 4455566676678888888774 333333333222233888877664 67888877732 2343333211
Q ss_pred EEeccCCCCCCHHHHHHHHHhhccCCc--cccCC
Q psy2878 143 ITVNNLNVGRNPIETLRILDAIQTGKL--CACNR 174 (181)
Q Consensus 143 ~~~~~~~~~~~~~~ll~~l~~l~~~~~--~~~~~ 174 (181)
+......++.++++++..-+... -.-+|
T Consensus 205 ----g~ed~~~l~~lv~~~~~~~nd~~~e~rr~w 234 (263)
T PTZ00222 205 ----NAEDEAALKNLIRSVNARFLSRSDVIRRQW 234 (263)
T ss_pred ----CcccHHHHHHHHHHHHHhhccchHHHHhhc
Confidence 12223456777777776554432 33456
No 337
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=25.80 E-value=2.1e+02 Score=22.39 Aligned_cols=28 Identities=7% Similarity=0.006 Sum_probs=16.6
Q ss_pred CChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 56 VCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 56 ~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
+|...=|.+.+++.+..+.||+++++..
T Consensus 186 P~~e~Dp~fa~~l~~A~~~GVev~~~~~ 213 (235)
T COG1489 186 PNREIDPKFAELLREAIKAGVEVLAYRF 213 (235)
T ss_pred cccccCHHHHHHHHHHHHcCCEEEEEEE
Confidence 3444456666666666666666666543
No 338
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.79 E-value=1.2e+02 Score=25.10 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=27.4
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
-|.|..+..||+|..-+.++....+..+..++.+-..
T Consensus 55 Ni~~i~GPGCPVCVtp~~~id~aiela~~~~~i~~Tf 91 (364)
T COG0409 55 NVEFIHGPGCPVCVTPMGRIDTAIELASSKDVIFCTF 91 (364)
T ss_pred ceEEecCCCCCeEeeEHHHHHHHHHHhCCCCcEEEec
Confidence 3667779999999988888888877665666555444
No 339
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=25.66 E-value=1.2e+02 Score=21.78 Aligned_cols=29 Identities=7% Similarity=0.121 Sum_probs=15.8
Q ss_pred HHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 66 KLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 66 ~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
++.++.++.|+.++.||.+...-.+.+++
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~ 124 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAE 124 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHH
Confidence 44444555566666666665544444443
No 340
>PRK10200 putative racemase; Provisional
Probab=25.30 E-value=2e+02 Score=22.11 Aligned_cols=44 Identities=2% Similarity=-0.219 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEE
Q psy2878 60 EISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 60 ~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
-.+.|.+..+.+.+.|++++.|..+.........++ ..+.|++.
T Consensus 60 ~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~-----~~~iPii~ 103 (230)
T PRK10200 60 TGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIES-----RCSLPFLH 103 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHH-----hCCCCEee
Confidence 567788888889999999999999986554333333 33456655
No 341
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=25.10 E-value=1.5e+02 Score=24.81 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=26.1
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
|.+..+..||+|.+-...+.+..+--...++.+...
T Consensus 54 ielisGPGCPVCVtp~~~ID~ai~La~~~~vi~~Tf 89 (364)
T PRK15062 54 IELIHGPGCPVCVTPMGRIDAAIELASRPGVILCTF 89 (364)
T ss_pred cEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEec
Confidence 455668999999998888888777655556555443
No 342
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=24.89 E-value=53 Score=20.70 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=22.6
Q ss_pred eEEEEcCCCcEEEEEeccCCC-CCCHHHHHHHHHhhc
Q psy2878 130 ATFIFDPQNIIQHITVNNLNV-GRNPIETLRILDAIQ 165 (181)
Q Consensus 130 ~~~liD~~g~i~~~~~~~~~~-~~~~~~ll~~l~~l~ 165 (181)
..|.||++|.|..-.++.... +...+++.+.|++.-
T Consensus 31 ~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l 67 (82)
T PF02563_consen 31 GEYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRL 67 (82)
T ss_dssp CSEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHH
T ss_pred cceEECCCCcEeecccceEEECCCCHHHHHHHHHHHH
Confidence 368999999998777655544 557788888776543
No 343
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=24.78 E-value=3.4e+02 Score=21.16 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 61 ISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 61 ~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
...|.++-.++.+.|+.|++|..|-.
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~g 220 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDMG 220 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 34556777889999999999998863
No 344
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=24.69 E-value=2.5e+02 Score=19.68 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=18.3
Q ss_pred ccceeEEEcCCc----hHHHHhCCCCCCCcceeeEEEEcCCCcEEE
Q psy2878 101 KLNHWQFSDTNG----SLIDQLGIRHETGVALRATFIFDPQNIIQH 142 (181)
Q Consensus 101 ~~~~~~~~D~~~----~~~~~~gv~~~~g~~~p~~~liD~~g~i~~ 142 (181)
+....+++.... .+.+.+|+. .+ .-..+.+|.+|++..
T Consensus 89 g~~~~ivS~~~~~~i~~~~~~~g~~---~~-~~~~~~~~~~g~~~g 130 (177)
T TIGR01488 89 GIDTVIVSGGFDFFVEPVAEKLGID---DV-FANRLEFDDNGLLTG 130 (177)
T ss_pred CCEEEEECCCcHHHHHHHHHHcCCc---hh-eeeeEEECCCCEEeC
Confidence 566666665433 233334432 10 123455667886554
No 345
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=24.59 E-value=1.5e+02 Score=21.98 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=14.5
Q ss_pred eeEEEEcCCCcEEEEEe
Q psy2878 129 RATFIFDPQNIIQHITV 145 (181)
Q Consensus 129 p~~~liD~~g~i~~~~~ 145 (181)
-.+||||++|+|.....
T Consensus 36 aNvyIis~kGkiLGy~~ 52 (177)
T PF06018_consen 36 ANVYIISRKGKILGYSF 52 (177)
T ss_dssp SEEEEEETTSBEEEEE-
T ss_pred CcEEEEeCCccEEEEec
Confidence 37899999999999885
No 346
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.55 E-value=1.2e+02 Score=19.96 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHH
Q psy2878 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRE 95 (181)
Q Consensus 61 ~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~ 95 (181)
+|.-.+..+.++++|..++.+|.++.....++.++
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~ 50 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKK 50 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHH
Confidence 45556777888888999999998875444444444
No 347
>KOG1503|consensus
Probab=24.51 E-value=3.6e+02 Score=21.36 Aligned_cols=94 Identities=9% Similarity=0.067 Sum_probs=58.2
Q ss_pred HHHHHHHHHh-cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-C--------------CCCc-
Q psy2878 64 YNKLVKDFNE-RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-H--------------ETGV- 126 (181)
Q Consensus 64 l~~l~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~--------------~~g~- 126 (181)
|+-++++..+ ++..+++=|++.......|+++. .+...++..+..+. .-++. . ..++
T Consensus 156 lqyiqe~ipdyrnavivaksp~~akka~syaerl----rlglavihge~k~~--e~d~~dgr~spp~~~~~t~~~~~~lp 229 (354)
T KOG1503|consen 156 LQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERL----RLGLAVIHGEQKDT--ESDLVDGRHSPPPVVTATTHPSLELP 229 (354)
T ss_pred HHHHHHhCccccceEEEecCcchhhHHHhHHHHH----hhceeEeecccccc--ccccccCCcCCCCccccccCccccCc
Confidence 3445555555 57888888888888888899887 66667766533221 11111 0 0011
Q ss_pred ------ceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 127 ------ALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 127 ------~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
--|-+++=|-.|+|.-.. ....++.+.++.+-+-+.+
T Consensus 230 ~~~~k~kppltvvgdvggriaimv---ddiiddvqsfvaaae~lke 272 (354)
T KOG1503|consen 230 AQISKEKPPLTVVGDVGGRIAIMV---DDIIDDVQSFVAAAEVLKE 272 (354)
T ss_pred hhhcccCCCeEEEeccCceEEEEe---hhhHHhHHHHHHHHHHHHh
Confidence 135788888889987666 3444567777777666654
No 348
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.34 E-value=1.9e+02 Score=18.71 Aligned_cols=16 Identities=19% Similarity=0.303 Sum_probs=12.8
Q ss_pred eeEEEEcCCCcEEEEE
Q psy2878 129 RATFIFDPQNIIQHIT 144 (181)
Q Consensus 129 p~~~liD~~g~i~~~~ 144 (181)
...|+.||+|..+-..
T Consensus 108 ~~~~~~DPdG~~iE~~ 123 (125)
T cd08357 108 ETFFLKDPSGNALEFK 123 (125)
T ss_pred eEEEEECCCCCEEEEe
Confidence 4789999999987543
No 349
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=24.19 E-value=2.5e+02 Score=20.08 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCc-EEEEEecCC
Q psy2878 63 EYNKLVKDFNERNA-ILLGGSSDN 85 (181)
Q Consensus 63 ~l~~l~~~~~~~~~-~vi~Is~d~ 85 (181)
.|++...++++.|+ -|+-|+.|.
T Consensus 72 ~L~~w~~~l~~~GFkhV~~lT~D~ 95 (142)
T PF10673_consen 72 RLNDWCEELKESGFKHVFYLTSDS 95 (142)
T ss_pred HHHHHHHHHHhcCCcEEEEEecCc
Confidence 57777777777777 455566664
No 350
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=24.15 E-value=2.7e+02 Score=20.58 Aligned_cols=32 Identities=6% Similarity=-0.047 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 65 NKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 65 ~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
.+...+++++|+.++.+|--+...+..+.+..
T Consensus 22 ~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l 53 (221)
T TIGR02463 22 APWLTRLQEAGIPVILCTSKTAAEVEYLQKAL 53 (221)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 45556677789999999998888888888776
No 351
>KOG2507|consensus
Probab=24.10 E-value=1.7e+02 Score=25.09 Aligned_cols=20 Identities=5% Similarity=0.117 Sum_probs=17.4
Q ss_pred ceeeEEEEcCCCcEEEEEec
Q psy2878 127 ALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 127 ~~p~~~liD~~g~i~~~~~~ 146 (181)
+.|..|+|+.+|+-+.+..+
T Consensus 77 ~vPs~ffIg~sGtpLevitg 96 (506)
T KOG2507|consen 77 SVPSIFFIGFSGTPLEVITG 96 (506)
T ss_pred cccceeeecCCCceeEEeec
Confidence 67899999999999988853
No 352
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.07 E-value=83 Score=20.03 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=20.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 51 KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 51 ~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
+..||.|..-...|.++.-. .+.+-|.. +-..+++|+.
T Consensus 9 sn~Cpdca~a~eyl~rl~v~-----yd~VeIt~-Sm~NlKrFl~ 46 (85)
T COG4545 9 SNLCPDCAPAVEYLERLNVD-----YDFVEITE-SMANLKRFLH 46 (85)
T ss_pred cccCcchHHHHHHHHHcCCC-----ceeeehhh-hhhhHHHHHh
Confidence 78899997655555444322 23333332 2345566655
No 353
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=23.98 E-value=2e+02 Score=18.33 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=30.3
Q ss_pred EEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 77 ILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 77 ~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
.-+++.+++.+...+.+++. +..+ ..++.. ..+|. ...++.||+|..+...
T Consensus 59 ~~i~~~v~d~~~~~~~l~~~----G~~~--~~~~~~---~~~g~--------~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 59 PDLSIEVDDVDAALARAVAA----GFAI--VYGPTD---EPWGV--------RRFFVRDPFGKLVNIL 109 (112)
T ss_pred CEEEEEeCCHHHHHHHHHhc----CCeE--ecCCcc---CCCce--------EEEEEECCCCCEEEEE
Confidence 45677777776666656554 4433 233221 12332 3678999999988665
No 354
>PRK05370 argininosuccinate synthase; Validated
Probab=23.94 E-value=1.7e+02 Score=25.17 Aligned_cols=70 Identities=11% Similarity=-0.041 Sum_probs=38.4
Q ss_pred ecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC----HH---HHHHHHHHcCCCcccceeE
Q psy2878 35 TESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN----EF---VKLAWRRENSNLYKLNHWQ 106 (181)
Q Consensus 35 ~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~----~~---~~~~~~~~~~~~~~~~~~~ 106 (181)
.|+++ +|+.++|.|-.+--+.+|...+ ++++..|++++.|- .+ ..++-+... +..-.+
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~wL----------~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~----GA~~~~ 69 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALLWM----------RQKGAVPYAYTANLGQPDEDDYDAIPRRAMEY----GAENAR 69 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHHHH----------HhcCCeEEEEEEECCCCCccchHHHHHHHHHh----CCCEEE
Confidence 35666 6766666664334344443322 22368888888653 22 333333333 554456
Q ss_pred EEcCCchHHHHh
Q psy2878 107 FSDTNGSLIDQL 118 (181)
Q Consensus 107 ~~D~~~~~~~~~ 118 (181)
+.|...++++.|
T Consensus 70 viDlr~eF~e~~ 81 (447)
T PRK05370 70 LIDCRAQLVAEG 81 (447)
T ss_pred EeccHHHHHHHH
Confidence 667777777666
No 355
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.92 E-value=88 Score=21.09 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 61 ~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
.+.+.+..+..+++|+.+++|+.+....+.+
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDSPLAK 90 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCCcHHH
Confidence 3455566666777888899998766544444
No 356
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=23.82 E-value=1.6e+02 Score=22.04 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHh--cCcEEEEEecCCHHHHHHHHH
Q psy2878 60 EISEYNKLVKDFNE--RNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 60 ~~~~l~~l~~~~~~--~~~~vi~Is~d~~~~~~~~~~ 94 (181)
....|+++.+.+.. ..+++|+||....+.+..++.
T Consensus 19 r~~~F~~lw~~l~~~~~~Lk~lAiSc~~~~~li~~L~ 55 (183)
T PF12617_consen 19 RLAAFERLWQALAPSVPQLKLLAISCPDGEGLIDYLW 55 (183)
T ss_pred ccHHHHHHHHHHHhhhhhccEEEEECCCCHHHHHHHH
Confidence 34556666666655 346777777766555544444
No 357
>PRK04011 peptide chain release factor 1; Provisional
Probab=23.55 E-value=1.4e+02 Score=25.30 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCHH
Q psy2878 62 SEYNKLVKDFNERNAILLGGSSDNEF 87 (181)
Q Consensus 62 ~~l~~l~~~~~~~~~~vi~Is~d~~~ 87 (181)
+.+..+.+..++.|..|..||.+.++
T Consensus 367 ~~v~~l~e~a~~~g~~v~iis~~~e~ 392 (411)
T PRK04011 367 DIIEELSELAEQSGTKVEVISTDTEE 392 (411)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCChh
Confidence 44666777777788999999887754
No 358
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=23.42 E-value=1.8e+02 Score=20.51 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=30.0
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.|.++|-|- ..|-|.|..+=.-|.+..++.+.- +.++.+..+.
T Consensus 20 drvvViRFG-~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~~ 62 (133)
T PF02966_consen 20 DRVVVIRFG-RDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDIDE 62 (133)
T ss_dssp SSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTT
T ss_pred ceEEEEEeC-CCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEccc
Confidence 478888887 668999987766677777766642 4666666664
No 359
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=23.39 E-value=2.2e+02 Score=18.40 Aligned_cols=41 Identities=10% Similarity=-0.138 Sum_probs=23.0
Q ss_pred cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 74 RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 74 ~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
.+-.++||.+.+.+...++.+.. ....+++.--.+.++++.
T Consensus 49 ~a~vlvgi~v~~~~~~~~l~~~L---~~~gy~~~dls~ne~~k~ 89 (91)
T PF00585_consen 49 FARVLVGIEVPDAEDLEELIERL---KALGYPYEDLSDNELAKL 89 (91)
T ss_dssp CSEEEEEEE-SSTHHHHHHHHHH---TSSS-EEECTTT-HHHHH
T ss_pred eeeEEEEEEeCCHHHHHHHHHHH---HHcCCCeEECCCCHHHHh
Confidence 35678899888776666766665 233444443345666554
No 360
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.18 E-value=1.3e+02 Score=24.12 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=13.1
Q ss_pred CCCCCCChhH--HHHHHHHHHHH
Q psy2878 51 KDFTFVCPTE--ISEYNKLVKDF 71 (181)
Q Consensus 51 ~~~cp~C~~~--~~~l~~l~~~~ 71 (181)
..|||.|..- +..+++...++
T Consensus 7 ~~~CpGCg~~~il~al~~al~~l 29 (279)
T PRK11866 7 PIWCPGCGNYGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCChHHHHHHHHHHHHh
Confidence 4699999533 45555555554
No 361
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=23.15 E-value=72 Score=22.74 Aligned_cols=35 Identities=17% Similarity=0.477 Sum_probs=23.1
Q ss_pred CCCCCCChh-------HHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 51 KDFTFVCPT-------EISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 51 ~~~cp~C~~-------~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
++-|.+|+. .-.+++++.++|...|+.|+.=+.+.
T Consensus 38 ~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGaaea 79 (154)
T PRK13265 38 STECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGAAEA 79 (154)
T ss_pred eeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecccch
Confidence 677888864 34567777777777776665444443
No 362
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=23.13 E-value=3.1e+02 Score=20.12 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=28.0
Q ss_pred eecCC--C--CC-CeEEEEEeeCCCC-CCChhHHHHHHHHHHHHHhcCc--EEEEEecC
Q psy2878 34 ITESS--F--PG-KWKIFYFYPKDFT-FVCPTEISEYNKLVKDFNERNA--ILLGGSSD 84 (181)
Q Consensus 34 ~~l~~--~--~g-k~~ll~F~~~~~c-p~C~~~~~~l~~l~~~~~~~~~--~vi~Is~d 84 (181)
+++.. + .| |.+++.+= -+-+ |.-...-+.+.+..+++++.+. .++.||.+
T Consensus 29 I~~~~~~Lk~~Gik~li~DkD-NTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNs 86 (168)
T PF09419_consen 29 IDFEANHLKKKGIKALIFDKD-NTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNS 86 (168)
T ss_pred CCcchhhhhhcCceEEEEcCC-CCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 44555 4 34 55555541 1112 2233344777778888887654 48888865
No 363
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=23.02 E-value=1.6e+02 Score=24.54 Aligned_cols=36 Identities=11% Similarity=0.009 Sum_probs=25.9
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
|.+..+..||+|..-...+.+..+--...|+.+...
T Consensus 60 IelisGPGCPVCVtp~~~ID~ai~LA~~~~vii~Tf 95 (369)
T TIGR00075 60 LELVHGPGCPVCVTPMERIDEAIELATIPEIIFCTF 95 (369)
T ss_pred cEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEec
Confidence 556668999999988888888776554456555444
No 364
>KOG0805|consensus
Probab=23.02 E-value=3.9e+02 Score=21.28 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=21.4
Q ss_pred CCCCCCC-hhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 51 KDFTFVC-PTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 51 ~~~cp~C-~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+..|+.- +..+....+...+..+.|.+++.+
T Consensus 25 ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~f 56 (337)
T KOG0805|consen 25 ASTVYNDTPATLDKAEKYIVEAASKGAELVLF 56 (337)
T ss_pred cccCCCCCHHHHHHHHHHHHHHhcCCceEEEe
Confidence 4445543 556777777778888888888766
No 365
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=23.01 E-value=2e+02 Score=24.87 Aligned_cols=37 Identities=19% Similarity=0.124 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 60 EISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 60 ~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
....|+++++.+++.|+.++....|+.....+++++.
T Consensus 53 l~~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~ 89 (461)
T COG0415 53 LLQSLQALQQSLAELGIPLLVREGDPEQVLPELAKQL 89 (461)
T ss_pred HHHHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHh
Confidence 3466999999999999999999999999999999987
No 366
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=22.94 E-value=5.4e+02 Score=22.81 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=37.4
Q ss_pred eeEEEcCCchHHHHhCCCCCCCcceeeEEEEc----CC-------CcEEEEEeccCCC-CCCHHHHHHHHHhh
Q psy2878 104 HWQFSDTNGSLIDQLGIRHETGVALRATFIFD----PQ-------NIIQHITVNNLNV-GRNPIETLRILDAI 164 (181)
Q Consensus 104 ~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD----~~-------g~i~~~~~~~~~~-~~~~~~ll~~l~~l 164 (181)
+.+..|.++.+.+.|.=.+..|+ |..++|| .| |.|--+...+... .-.++++++.|.+.
T Consensus 466 ~rv~~DdsesIGKKyRraDeiGi--Py~ITVD~~Tl~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~~ 536 (539)
T PRK14894 466 MRTVYDDTGAIGKLYRRQDEIGT--PFCITVDFDTIGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRDR 536 (539)
T ss_pred ceEEEcCCCCHhHHHHhhhccCC--CEEEEEeccccccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHHH
Confidence 47888878888888764344444 5899996 22 6665555433332 33578888888654
No 367
>PRK06724 hypothetical protein; Provisional
Probab=22.94 E-value=2e+02 Score=19.62 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.2
Q ss_pred eeEEEEcCCCcEEEEE
Q psy2878 129 RATFIFDPQNIIQHIT 144 (181)
Q Consensus 129 p~~~liD~~g~i~~~~ 144 (181)
.+.++-||+|..+-..
T Consensus 106 ~~~~f~DPdG~~iEl~ 121 (128)
T PRK06724 106 YTIDFYDPNGFIIEVA 121 (128)
T ss_pred EEEEEECCCCCEEEEE
Confidence 4778999999988665
No 368
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=22.88 E-value=2.5e+02 Score=19.05 Aligned_cols=32 Identities=3% Similarity=-0.126 Sum_probs=20.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 51 KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 51 ~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+...+.... ...+..++++++++.++.|...+
T Consensus 111 TDG~~~~~~---~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 111 TDGRSDDGG---DPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred CCCCCCCCc---chHHHHHHHHHCCCEEEEEeccc
Confidence 444444432 45666777777788888887764
No 369
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=22.87 E-value=1.7e+02 Score=19.72 Aligned_cols=40 Identities=15% Similarity=-0.008 Sum_probs=24.0
Q ss_pred CCCChhHHHHHHHHHHHHHhcCcEEEEEecC--------C---HHHHHHHHHHc
Q psy2878 54 TFVCPTEISEYNKLVKDFNERNAILLGGSSD--------N---EFVKLAWRREN 96 (181)
Q Consensus 54 cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d--------~---~~~~~~~~~~~ 96 (181)
|+.-...+..++..+++| |+.+++|+.| + .++..+++.++
T Consensus 26 ~~~~~~~~a~lr~W~er~---ga~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~ 76 (111)
T PF14062_consen 26 CPDTADIIAVLRYWEERY---GAEIVGIGFDTLELSVARPPQTPEEAEALAAEH 76 (111)
T ss_pred CCCHHHHHHHHHHHHHHh---CEEEEEEECCEEEEEECCCCCCHHHHHHHHHHH
Confidence 554444444455555444 7889999864 2 36666666664
No 370
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=22.63 E-value=97 Score=18.37 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=15.0
Q ss_pred ceeeEEEEcCCCcEEEEE
Q psy2878 127 ALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 127 ~~p~~~liD~~g~i~~~~ 144 (181)
+.+-.+.+|.+|+|....
T Consensus 41 ~dRLnv~~D~~g~I~~v~ 58 (60)
T PF11720_consen 41 PDRLNVEVDDDGVITRVR 58 (60)
T ss_pred CCcEEEEECCCCcEEEEe
Confidence 577899999999997654
No 371
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=22.57 E-value=3e+02 Score=19.95 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=11.7
Q ss_pred HHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 69 KDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 69 ~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
+.++++|..++.||.....-++.+++
T Consensus 97 ~~l~~~g~~v~ivS~s~~~~v~~~~~ 122 (202)
T TIGR01490 97 RWHKAEGHTIVLVSASLTILVKPLAR 122 (202)
T ss_pred HHHHHCCCEEEEEeCCcHHHHHHHHH
Confidence 33344455555555444444444333
No 372
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=22.45 E-value=2.6e+02 Score=22.05 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=32.5
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHH
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEF 87 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~ 87 (181)
|++.++||.+- .....+ ....+..+.+.++.+|+.+|||.-.+++
T Consensus 48 F~~~PvVlDl~--~l~~~~--~~~dl~~L~~~Lr~~gl~~vGV~g~~~~ 92 (248)
T PRK04596 48 FGRAAVILDFG--GLSQVP--DLATAKALLDGLRSAGVLPVALAYGTSE 92 (248)
T ss_pred hCCCcEEEEch--hhcCcc--ccccHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 47789999983 332222 2245778888899999999999987654
No 373
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=22.41 E-value=36 Score=28.02 Aligned_cols=15 Identities=0% Similarity=-0.134 Sum_probs=12.3
Q ss_pred cCCccccCCCCCCCC
Q psy2878 166 TGKLCACNRTLNGKT 180 (181)
Q Consensus 166 ~~~~~~~~~~~~~~~ 180 (181)
...+|+++|++|.++
T Consensus 180 ~~~~t~I~WK~Gkdl 194 (337)
T PTZ00007 180 NTVATEIDWKQGKDV 194 (337)
T ss_pred cceeeeceeeCCCCc
Confidence 446899999999865
No 374
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=22.36 E-value=2.7e+02 Score=19.12 Aligned_cols=59 Identities=12% Similarity=-0.015 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCH-HHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 62 SEYNKLVKDFNERNAILLGGSSDNE-FVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 62 ~~l~~l~~~~~~~~~~vi~Is~d~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
...++..+..+.....++.|+.|-. ..........-...+.++.++.+ ..++.+..|..
T Consensus 30 ~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~s-k~~LG~a~g~~ 89 (116)
T COG1358 30 KGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGS-KKELGKAVGKE 89 (116)
T ss_pred hhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCC-HHHHHHHhCCC
Confidence 4456666667766688888887753 55555555443334888877654 67888888863
No 375
>KOG3859|consensus
Probab=22.35 E-value=42 Score=27.19 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=34.7
Q ss_pred CChhHHHHH-HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 56 VCPTEISEY-NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 56 ~C~~~~~~l-~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
.|..++..+ .++..++.+.|++++-...|+......-..- ...++|.++...+
T Consensus 189 isK~eL~~FK~kimsEL~sngv~IYqfPtDdetva~~N~~m---n~~lPFAVvGSte 242 (406)
T KOG3859|consen 189 ISKEELKRFKIKIMSELVSNGVQIYQFPTDDETVAKANSEM---NHSLPFAVVGSTE 242 (406)
T ss_pred hhHHHHHHHHHHHHHHHHhcCceeeeccchHHHHHHHHHHh---hcCCceeEecchH
Confidence 577777777 4577888888999999888864433222221 1377888876543
No 376
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=22.26 E-value=3.6e+02 Score=20.50 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=33.7
Q ss_pred CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEE
Q psy2878 75 NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHI 143 (181)
Q Consensus 75 ~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~ 143 (181)
++.+|.+.-+ ..++.+ .+.-+++.|..+.+.++||+. +.|+.+ .++|+...+
T Consensus 148 ~~k~IL~~Gs-~~~l~~---------~l~~~vYfdQ~g~Lt~rF~I~-----~VPavV--~q~g~~l~I 199 (202)
T TIGR02743 148 NVKWILTGGS-VNELEK---------RLDSRIYFDQHGKLTQKFGIK-----HVPARV--SQEGLRLRI 199 (202)
T ss_pred CeEEEEeCCC-HHHHHH---------HhCCceEEcCCchHhhccCce-----eeceEE--EecCCEEEE
Confidence 4677666644 333322 345567888899999999987 666644 467766543
No 377
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=22.22 E-value=54 Score=17.71 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=16.7
Q ss_pred CCCCCeEEEEEeeCCCCCCChhH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTE 60 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~ 60 (181)
.+.|+.+++--.++..|+.|-..
T Consensus 19 ~~~~~~~~i~~vp~~~C~~CGE~ 41 (46)
T TIGR03831 19 EYGGELIVIENVPALVCPQCGEE 41 (46)
T ss_pred EeCCEEEEEeCCCccccccCCCE
Confidence 34677777777878889999543
No 378
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=22.19 E-value=3.6e+02 Score=20.56 Aligned_cols=32 Identities=3% Similarity=-0.081 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 65 NKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 65 ~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
.+..++++++|+.|+..|--+......+.++.
T Consensus 26 ~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l 57 (272)
T PRK10530 26 LEALARAREAGYKVIIVTGRHHVAIHPFYQAL 57 (272)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc
Confidence 35556677889988888877777777777665
No 379
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=22.11 E-value=3.7e+02 Score=20.59 Aligned_cols=78 Identities=12% Similarity=0.050 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCc
Q psy2878 60 EISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNI 139 (181)
Q Consensus 60 ~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~ 139 (181)
..+...+..++++++|+.++..|--+...+....++. +...++++. -..++.++ |+
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l----~~~~~~I~~-------------------NGa~i~~~-~~ 76 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVLSILEEL----GLDGPLITF-------------------NGALIYNG-GE 76 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc----CCCccEEEe-------------------CCeEEecC-Cc
Confidence 3345556666788899999999988887887877776 554444432 13345555 66
Q ss_pred EEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 140 IQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 140 i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+++... -.....+++++.++..
T Consensus 77 ~i~~~~---l~~~~~~~i~~~~~~~ 98 (264)
T COG0561 77 LLFQKP---LSREDVEELLELLEDF 98 (264)
T ss_pred EEeeec---CCHHHHHHHHHHHHhc
Confidence 665552 2223455666666444
No 380
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=21.85 E-value=1.6e+02 Score=16.28 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=14.0
Q ss_pred eeEEEEcCCCcEEEEEe
Q psy2878 129 RATFIFDPQNIIQHITV 145 (181)
Q Consensus 129 p~~~liD~~g~i~~~~~ 145 (181)
....|+|.+|++++...
T Consensus 31 ~~~~V~d~~~~~~G~is 47 (57)
T PF00571_consen 31 SRLPVVDEDGKLVGIIS 47 (57)
T ss_dssp SEEEEESTTSBEEEEEE
T ss_pred cEEEEEecCCEEEEEEE
Confidence 47889999999998773
No 381
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.75 E-value=1.9e+02 Score=18.85 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=30.7
Q ss_pred CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEE
Q psy2878 75 NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHI 143 (181)
Q Consensus 75 ~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~ 143 (181)
+..-+++++++.+++.++.++... .+.. +..++.. ..+ .+......|+-||+|..+..
T Consensus 64 ~~~hi~f~v~~~~~v~~~~~~~~~-~g~~--~~~~~~~---~~~-----~~~~~~~~~~~DPdG~~ie~ 121 (123)
T cd07262 64 NGTHVAFAAPSREAVDAFHAAALA-AGGT--DEGAPGL---RPH-----YGPGYYAAYVRDPDGNKIEA 121 (123)
T ss_pred CceEEEEECCCHHHHHHHHHHHHH-cCCc--cCCCCCC---CCC-----CCCCeEEEEEECCCCCEEEE
Confidence 345788888887767676665311 1221 1111110 001 01123367999999998754
No 382
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=21.70 E-value=1.4e+02 Score=20.47 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=17.4
Q ss_pred eeecCCCCCCeEEEEEeeCCCCCCChhHHHH
Q psy2878 33 VITESSFPGKWKIFYFYPKDFTFVCPTEISE 63 (181)
Q Consensus 33 ~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~ 63 (181)
.+.+.+..|..++|.=-.. -|+.|+--|..
T Consensus 58 ~l~~~~~~Gd~m~I~G~yp-PC~~CkG~Mr~ 87 (118)
T PF14427_consen 58 DLPLNQVPGDRMLIDGQYP-PCNSCKGKMRR 87 (118)
T ss_pred hcCccccCCceEEEeeecC-CCchhHHHHHH
Confidence 3455556687666665433 37777765543
No 383
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=21.53 E-value=1.5e+02 Score=25.61 Aligned_cols=50 Identities=4% Similarity=0.046 Sum_probs=39.3
Q ss_pred eeeecCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 32 KVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 32 ~~~~l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
+.+++++++|. .+||.- + .-..+...+...+...+++.++||-||-|..+
T Consensus 287 ~~v~l~~LRg~~RvvIvA--G-~~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 287 RIVELVQLRDITRPVILA--G-TKESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred CEEeHHHhcCcceEEEEE--C-CHHHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 78999999995 344442 3 24567778888899999999999999999875
No 384
>PLN02734 glycyl-tRNA synthetase
Probab=21.24 E-value=4.5e+02 Score=24.05 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=39.9
Q ss_pred cceeEEEcCC-chHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCC-CCCCHHHHHHHHHhhccC
Q psy2878 102 LNHWQFSDTN-GSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLN-VGRNPIETLRILDAIQTG 167 (181)
Q Consensus 102 ~~~~~~~D~~-~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~-~~~~~~~ll~~l~~l~~~ 167 (181)
..+.+..|.. ..+.++|.-.+..|+ |..++||.+|.|.-+...... ..-.++++.+.|.++..+
T Consensus 598 ~GIrVelDd~~~SIGKRyrrADeiGI--Pf~ItIG~dgtVTIRdRdsgeQ~rV~ldeLv~~I~~li~~ 663 (684)
T PLN02734 598 AGISHKIDITGTSIGKRYARTDELGV--PFAVTVDSDGSVTIRERDSKDQVRVPVEEVASVVKDLTDG 663 (684)
T ss_pred CCCEEEEECCCCCHhHHHHHHHHcCC--CEEEEECCCCeEEEEECCCCceEEeeHHHHHHHHHHHHcC
Confidence 3455666644 467777653333344 589999998888777653222 233577888888776654
No 385
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.13 E-value=2.3e+02 Score=18.75 Aligned_cols=30 Identities=23% Similarity=0.118 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 62 SEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 62 ~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
..+.+..+..+++|+.+|.|+........+
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 445566667788899999999876555544
No 386
>PF14903 WG_beta_rep: WG containing repeat
Probab=21.10 E-value=67 Score=16.04 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=10.0
Q ss_pred EEcCCCcEEEEEe
Q psy2878 133 IFDPQNIIQHITV 145 (181)
Q Consensus 133 liD~~g~i~~~~~ 145 (181)
+||.+|+++....
T Consensus 3 ~id~~G~~vi~~~ 15 (35)
T PF14903_consen 3 YIDKNGKIVIPPK 15 (35)
T ss_pred EEeCCCCEEEEcc
Confidence 7899999986543
No 387
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=21.07 E-value=1.3e+02 Score=25.68 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCC----HHHHHHHHHHcCCCcccceeEE------------EcCC----chHHHHhC
Q psy2878 60 EISEYNKLVKDFNERNAILLGGSSDN----EFVKLAWRRENSNLYKLNHWQF------------SDTN----GSLIDQLG 119 (181)
Q Consensus 60 ~~~~l~~l~~~~~~~~~~vi~Is~d~----~~~~~~~~~~~~~~~~~~~~~~------------~D~~----~~~~~~~g 119 (181)
|-|.+..+.+.++..|++++.|.+|. ++.+++..++. ++.+-++ +... -+++++++
T Consensus 185 E~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~ 260 (459)
T COG1167 185 EDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQW----KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYD 260 (459)
T ss_pred cCCCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhc----CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcC
Confidence 44555566777888899999999874 56666655543 2222111 1111 45688888
Q ss_pred CC--CCC--------CcceeeEEEEcCCCcEEEEEec
Q psy2878 120 IR--HET--------GVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 120 v~--~~~--------g~~~p~~~liD~~g~i~~~~~~ 146 (181)
++ +++ +.+.|...=.|++++|+|....
T Consensus 261 ~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSF 297 (459)
T COG1167 261 VLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSF 297 (459)
T ss_pred CeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeee
Confidence 87 221 1233446778889999998863
No 388
>PRK10819 transport protein TonB; Provisional
Probab=21.01 E-value=1.6e+02 Score=23.11 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=28.1
Q ss_pred hHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCH-HHHHHHHHhh
Q psy2878 113 SLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNP-IETLRILDAI 164 (181)
Q Consensus 113 ~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~-~~ll~~l~~l 164 (181)
..+++.|+. |. ..--|.||.+|+|....+-..+....+ ++++++++..
T Consensus 172 ~~A~~~g~e---G~-V~V~f~I~~~G~V~~v~V~~Ssg~~~fD~aal~Avr~w 220 (246)
T PRK10819 172 ARAQALRIE---GQ-VKVKFDVDEDGRVDNVRILSAEPRNMFEREVKQAMRKW 220 (246)
T ss_pred HHHHHcCCc---eE-EEEEEEECCCCCEEEEEEeccCChHHHHHHHHHHHHhc
Confidence 344444443 42 335799999999988876332222223 3566777655
No 389
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=20.87 E-value=3.2e+02 Score=19.52 Aligned_cols=28 Identities=7% Similarity=0.074 Sum_probs=14.3
Q ss_pred CcEEEEEeccCCCC-CCHHHHHHHHHhhc
Q psy2878 138 NIIQHITVNNLNVG-RNPIETLRILDAIQ 165 (181)
Q Consensus 138 g~i~~~~~~~~~~~-~~~~~ll~~l~~l~ 165 (181)
|+++.......+.. -..+.+-+.++++.
T Consensus 135 ~~f~gl~~~~~~~~~~~~~r~~~w~~~~~ 163 (167)
T TIGR01752 135 DKFVGLALDEDNQPDLTEERIEKWVEQIK 163 (167)
T ss_pred CEEEEEEecCCCchhhhHHHHHHHHHHHH
Confidence 37776654333332 23455666666554
No 390
>PHA00649 hypothetical protein
Probab=20.64 E-value=66 Score=19.98 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.2
Q ss_pred cEEEEEecCCHHHHHHHHHHc
Q psy2878 76 AILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 76 ~~vi~Is~d~~~~~~~~~~~~ 96 (181)
+.+++|..|.++..++|.+..
T Consensus 23 ~~~LGVD~~~P~~VEEFr~D~ 43 (83)
T PHA00649 23 FAILGVDVDVPEQVEEFREDL 43 (83)
T ss_pred HHHHcCCCCCHHHHHHHHHHH
Confidence 556789999999999988854
No 391
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=20.64 E-value=1.1e+02 Score=21.77 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=17.8
Q ss_pred eeecCCCCCCeEEEEEeeCC--CCCCCh
Q psy2878 33 VITESSFPGKWKIFYFYPKD--FTFVCP 58 (181)
Q Consensus 33 ~~~l~~~~gk~~ll~F~~~~--~cp~C~ 58 (181)
-+++-|+.|+..++.|+.+. .|+.|-
T Consensus 6 ~~~~~d~p~~~~~~vfl~GCnlrC~~C~ 33 (147)
T TIGR02826 6 IIVFQEVPNEYSLAFYITGCPLGCKGCH 33 (147)
T ss_pred eEEEeecCCCEEEEEEeCCCCCCCCCCC
Confidence 45677888887777777332 288883
No 392
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=20.52 E-value=4e+02 Score=20.39 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=52.2
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
..++.-++-.=.--|+||-+. =..++.-+++.+... ..+.+|.+.-+..+..+ .+.-+++.|..
T Consensus 109 ~~vNPLd~v~~~~~LvfiDgd----D~~Qv~wak~~~~~~--~~~k~ILv~Gs~~~~~~----------~l~~~vYfdQ~ 172 (209)
T PRK13738 109 EVVNPLQYVPFNQTLYFINGD----DPAQVAWMKRQTPPT--LESKIILVQGSIPEMSK----------ALDSRIYFDQN 172 (209)
T ss_pred CeECcccccCCCceEEEEeCC----CHHHHHHHHHhhhcc--CCceEEEECCCHHHHHH----------HhCCceEEcCc
Confidence 344444443211234454343 235554444432222 25777777766544332 33456788989
Q ss_pred chHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 112 GSLIDQLGIRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 112 ~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+.+.++||+. +.|+.+---++|+...+..
T Consensus 173 G~Lt~rF~I~-----~VPAvV~~~q~G~~l~I~E 201 (209)
T PRK13738 173 GVLCQRFGID-----QVPARVSAVPGGRFLKVEF 201 (209)
T ss_pred chHHHhcCCe-----eeceEEEEcCCCCEEEEEE
Confidence 9999999987 6666543227888776663
No 393
>PRK09267 flavodoxin FldA; Validated
Probab=20.47 E-value=3.3e+02 Score=19.37 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=4.6
Q ss_pred HHHHHHHHhh
Q psy2878 155 IETLRILDAI 164 (181)
Q Consensus 155 ~~ll~~l~~l 164 (181)
+.+-+.++++
T Consensus 154 ~~i~~w~~~i 163 (169)
T PRK09267 154 ERIEAWVKQI 163 (169)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 394
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.11 E-value=2.2e+02 Score=17.21 Aligned_cols=15 Identities=13% Similarity=0.146 Sum_probs=9.3
Q ss_pred EeeCCCCCCChhHHH
Q psy2878 48 FYPKDFTFVCPTEIS 62 (181)
Q Consensus 48 F~~~~~cp~C~~~~~ 62 (181)
.|....||.|.+..-
T Consensus 4 Ly~~~~sp~~~kv~~ 18 (77)
T cd03041 4 LYEFEGSPFCRLVRE 18 (77)
T ss_pred EecCCCCchHHHHHH
Confidence 344567888875443
No 395
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=20.09 E-value=2.1e+02 Score=21.08 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHH
Q psy2878 63 EYNKLVKDFNERNAILLGGSSDNEFVKLAWRRE 95 (181)
Q Consensus 63 ~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~ 95 (181)
.+.++.+.++++|..+..||.........+.+.
T Consensus 89 g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~ 121 (219)
T TIGR00338 89 GAEELVKTLKEKGYKVAVISGGFDLFAEHVKDK 121 (219)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHH
Confidence 334444445555556655555554444444443
No 396
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=20.07 E-value=2.6e+02 Score=18.16 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=13.3
Q ss_pred eeEEEEcCCCcEEEEE
Q psy2878 129 RATFIFDPQNIIQHIT 144 (181)
Q Consensus 129 p~~~liD~~g~i~~~~ 144 (181)
+..++.||+|..+...
T Consensus 102 ~~~~~~DPdG~~ie~~ 117 (120)
T cd08350 102 REFALVDPDGNLLRFG 117 (120)
T ss_pred eEEEEECCCCCEEEee
Confidence 4789999999988654
Done!