RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2878
(181 letters)
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 241 bits (616), Expect = 2e-82
Identities = 73/183 (39%), Positives = 104/183 (56%), Gaps = 2/183 (1%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVS--AFKVITESSFPGKWKIFYFYPKDFTFVCP 58
+ TIG +Y++ + G + F IT PGKW++ +F+PKDFTFVCP
Sbjct: 3 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCP 62
Query: 59 TEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118
TEI+ ++KL +F +R+A +LG S D+EF WR ++++L L SD L
Sbjct: 63 TEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA 122
Query: 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNG 178
G+ + GVA R TFI DP N IQ ++ +VGRN E LR+LDA+Q+ +LCA N
Sbjct: 123 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQSDELCASNWRKGD 182
Query: 179 KTL 181
TL
Sbjct: 183 PTL 185
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 178 bits (455), Expect = 5e-58
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
F + F +TE+ GKW I FYP DF+FVCPTE+ + K + +
Sbjct: 8 QPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVE 67
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDP 136
+ S+D FV AW + + + + D + ++ Q + +E TG+A R TFI DP
Sbjct: 68 VYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDP 127
Query: 137 QNIIQHITVNNLNVGRNPIETLRILDAIQ-----TGKLCACNRTLNGKTL 181
+IQ I +N +GR+ + + A Q G++C G+TL
Sbjct: 128 DGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWEEGGETL 177
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 177 bits (451), Expect = 2e-57
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 6/157 (3%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
F +TE G+W +F+FYP DFTFV PTE+ + ++ + + S+D F
Sbjct: 20 FIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK 79
Query: 91 AWRRENSNLYKLNHWQFSDTNGSLIDQLGI-RHETGVALRATFIFDPQNIIQHITVNNLN 149
AW + + K+ + D G+L R + G+A RATF+ DPQ IIQ I V
Sbjct: 80 AWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEG 139
Query: 150 VGRNPIETLRILDAIQ-----TGKLCACNRTLNGKTL 181
+GR+ + LR + A Q G++C TL
Sbjct: 140 IGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATL 176
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 177 bits (451), Expect = 3e-57
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 26 NNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84
N + S GK I +F+PKDFTFVCPTEI ++K VKDF+E+ ++G S D
Sbjct: 17 GNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSID 76
Query: 85 NEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQ 141
+E V AW+ E + +++ +D S+ + E +ALR F+ D ++
Sbjct: 77 SEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVR 136
Query: 142 HITVNNLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
H +N+L +GRN E LR++DA+ G++C K +
Sbjct: 137 HAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGM 180
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 176 bits (448), Expect = 7e-57
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 8/172 (4%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F+ FK ++ SS+ GK+ + +FYP DFTFVCPTEI +++ K F E N
Sbjct: 13 PEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTE 72
Query: 78 LLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFI 133
++ S D+E+ L W R+ L + +D ++ G+ E +GVA R FI
Sbjct: 73 VISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFI 132
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
DP ++ I +N++ +GRN E +R+++A+Q G++C N
Sbjct: 133 IDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPANWKKGDAKK 184
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 175 bits (447), Expect = 2e-56
Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 8/172 (4%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76
P F ++F + + F GK + + YFYP DFTFVCP+EI +K + F+ERN
Sbjct: 28 PFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNV 87
Query: 77 ILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFI 133
LLG S D+++ LAW+ + + H SD S+ + + V+LRA +
Sbjct: 88 ELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVL 147
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
D I+QH+ VNNL +GR+ E LRI+DAIQ G +C N ++
Sbjct: 148 IDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHEKYGDVCPANWQKGKVSM 199
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 173 bits (440), Expect = 1e-55
Identities = 62/172 (36%), Positives = 91/172 (52%), Gaps = 8/172 (4%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76
P F + F ++ S F GK + + YFYP DFTFVCP+EI +K + F ERN
Sbjct: 7 PSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNV 66
Query: 77 ILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFI 133
LLG S D++F LAW+ + + H SD + S+ + VALRA +
Sbjct: 67 ELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVL 126
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
D Q ++QH+ VNNL +GR+ E LR++DA+Q G +C N +++
Sbjct: 127 IDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKGKESM 178
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 172 bits (439), Expect = 4e-55
Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 8/172 (4%)
Query: 18 PGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76
F N + + SSF G K+ FYP ++TFVCPTEI E+NK +KDF +N
Sbjct: 32 YNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNV 91
Query: 77 ILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFI 133
LLG S D+ + LAW+ E + + SD N + + ++ ALR FI
Sbjct: 92 ELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFI 151
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
D ++H TVN+L +GRN E LR +D+I +G++C N K
Sbjct: 152 IDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHVDTSGEVCPINWKKGQKAF 203
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 172 bits (438), Expect = 5e-55
Identities = 63/159 (39%), Positives = 90/159 (56%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
F ++ + GK+ + F P FTFV PTEI +++ K F E+ A +L S+D+E+ L
Sbjct: 42 FDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLL 101
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R+ L +N +DTN SL G+ E GVALR FI DP+ +I+HIT+N
Sbjct: 102 AWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITIN 161
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
+L VGRN E LR+++A Q G + CN T T+
Sbjct: 162 DLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATI 200
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 172 bits (438), Expect = 6e-55
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK I + GK+ + +FYP DFTFVCPTEI ++ V++FN RN ++ S+D+++ L
Sbjct: 59 FKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHL 118
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R++ L + +D + G+ E G A R FI DP I++ IT+N
Sbjct: 119 AWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITIN 178
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
+ VGR+ ETLR+LDA Q G++C N +
Sbjct: 179 DKPVGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQHGI 217
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 169 bits (431), Expect = 3e-54
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 8/183 (4%)
Query: 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNK 66
S + P FN FK + +S+ GKW + +FYP DFTFVCPTEI +++
Sbjct: 2 SCGEAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSD 61
Query: 67 LVKDFNERNAILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE 123
VK+F++ +L S D+E+ LAW R+ L ++N +D ++ G+ E
Sbjct: 62 RVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKE 121
Query: 124 -TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ----TGKLCACNRTLNG 178
GVA R FI DP+ ++ ITVN+L VGR+ E LR++ A Q G++C N
Sbjct: 122 EDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWKPGD 181
Query: 179 KTL 181
KT+
Sbjct: 182 KTM 184
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 166 bits (424), Expect = 3e-53
Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK + S + GK+ + +FYP DFTFV PTEI ++ +DF + +LG S D++F L
Sbjct: 24 FKEVKLSDYKGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHL 83
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R+ L LN +D L + G+ G+A R FI D + +++ ITVN
Sbjct: 84 AWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVN 143
Query: 147 NLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
+L VGR+ E LR++ A Q G++C T+
Sbjct: 144 DLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTI 182
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 166 bits (423), Expect = 1e-52
Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK I+ F GK+ + +FYP DFTFVCPTEI ++ +F++ N ++ S D+ F L
Sbjct: 46 FKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHL 105
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R+N L +N SD + G+ E G+ALR FI DP +I+H++VN
Sbjct: 106 AWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVN 165
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
+L VGR+ ETLR++ A Q G++ N T T+
Sbjct: 166 DLPVGRSVEETLRLVKAFQFVEAHGEVSPANWTPESPTI 204
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 167 bits (424), Expect = 1e-52
Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK + S + GK+ +F+FYP DFTFVCPTEI ++ V +F N ++ S D++F L
Sbjct: 67 FKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHL 126
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R+ L + SD + G+ E G LR FI D + +++ IT+N
Sbjct: 127 AWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMN 186
Query: 147 NLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
+L VGR+ ETLR++ A Q G++C T+
Sbjct: 187 DLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTI 225
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 166 bits (423), Expect = 2e-52
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK + + + GK+ +F+FYP DFTFVCPTEI + +++F N ++ S D++F L
Sbjct: 81 FKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHL 140
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R L + SD + G+ E +G LR FI D + I++ IT+N
Sbjct: 141 AWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLN 200
Query: 147 NLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
+L VGR+ ETLR++ A Q G++ +T+
Sbjct: 201 DLPVGRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSETI 239
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 164 bits (418), Expect = 5e-52
Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK + + + GK+ +F+FYP DFTFVCPTEI + +++F N ++ S D++F L
Sbjct: 38 FKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHL 97
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R L + SD + G+ E +G LR FI D + I++ IT+N
Sbjct: 98 AWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLN 157
Query: 147 NLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
+L VGR+ ETLR++ A Q G++C +T+
Sbjct: 158 DLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 196
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 134 bits (340), Expect = 6e-41
Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 12/152 (7%)
Query: 18 PGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76
P F L ++N +++T + G K + F+P FT +C E+ + + +F ++
Sbjct: 16 PDFTLRDQN----QQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDS 71
Query: 77 ILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSD--TNGSLIDQLGI-RHETGVALRATFI 133
L S W + SD +G++ G+ + G+A R TF+
Sbjct: 72 AALAISVGPPPTHKIWATQ----SGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFV 127
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165
D II+ + R+ L A+
Sbjct: 128 VDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 134 bits (339), Expect = 4e-40
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLY 100
W I + +P DFT VC TE++E K+ +DF + N L+G S +++ W +
Sbjct: 31 NSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYG 90
Query: 101 KLNHWQF---SDTNGSLIDQLGIRHE-------TGVALRATFIFDPQNIIQHITVNNLNV 150
KLN W+ D + L ++L I E + R F P+ I+ +
Sbjct: 91 KLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATT 150
Query: 151 GRNPIETLRILDAIQT 166
GRN E LR+L ++Q
Sbjct: 151 GRNAHEILRVLKSLQL 166
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 132 bits (334), Expect = 3e-39
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 13/139 (9%)
Query: 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWR---RENS 97
W I + +P+DFT VC TE+ KL +F +RN L+ S D+ LAW +
Sbjct: 31 DSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYN 90
Query: 98 NLYKLNHWQF---SDTNGSLIDQLGIRHE-------TGVALRATFIFDPQNIIQHITVNN 147
+ F D N L LG+ V R F+F P ++ +
Sbjct: 91 SEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYP 150
Query: 148 LNVGRNPIETLRILDAIQT 166
GRN E LR++ ++Q
Sbjct: 151 ATTGRNFDEILRVVISLQL 169
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 132 bits (333), Expect = 7e-39
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWR---RENS 97
GKW + + +P DFT VC TE + + +DF L+G S D+ F + W+ +
Sbjct: 33 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHI 92
Query: 98 NLYKLNHWQF---SDTNGSLIDQLGIRH--ETGVALRATFIFDPQNIIQHITVNNLNVGR 152
+ F +D G++ +LG+ H +R FI D + +I+ + + +GR
Sbjct: 93 GV----RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGR 148
Query: 153 NPIETLRILDAIQTG 167
E LRI+ A++ G
Sbjct: 149 LVDEILRIVKALKLG 163
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 130 bits (330), Expect = 2e-38
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 15/139 (10%)
Query: 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWR---RENS 97
W + + +P+DFT V TE+ +L DF +R L+ S DN W + S
Sbjct: 29 NSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLS 88
Query: 98 NLYKLNHWQF---SDTNGSLIDQLGIRHE-------TGVALRATFIFDPQNIIQHITVNN 147
+ + +D L +LG+ + RA FI P ++ +
Sbjct: 89 GVK--GDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYP 146
Query: 148 LNVGRNPIETLRILDAIQT 166
GRN E LR++D++Q
Sbjct: 147 ATTGRNFSEILRVIDSLQL 165
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 92.7 bits (231), Expect = 2e-24
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F LP+ K + S+ GK + FYP FT VC E+ + + FN+ NA+
Sbjct: 11 PDFELPDTEL----KKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAV 66
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE------TGVALRAT 131
+LG S D F A++ KLN SD N ++ + + E +A RA
Sbjct: 67 VLGISVDPPFSNKAFKEH----NKLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAV 122
Query: 132 FIFDPQNIIQHITVNNLNVGRNPI-ETLRILDAI 164
F+ D + +++ V++ P E +++ ++
Sbjct: 123 FVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 88.1 bits (219), Expect = 9e-23
Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 16/156 (10%)
Query: 18 PGFNLPEENNVSAFKVITESSFP--GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN 75
P F LP ++ + + G+ + F+P F+ VC E+ + + + N
Sbjct: 12 PDFTLPNQDF----EPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN 67
Query: 76 AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET-----GVALRA 130
A +L S D+ + ++ E +L SD N +I + HE VA RA
Sbjct: 68 AEVLAISVDSPWCLKKFKDE----NRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRA 123
Query: 131 TFIFDPQNIIQHITVNNLNVGRNPI-ETLRILDAIQ 165
FI P + + V + + E +R + I
Sbjct: 124 VFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 159
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 82.6 bits (205), Expect = 1e-20
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 23/163 (14%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWK-IFYFYPKDFTFVCPTEISEYNKLVKDF 71
+G K P F +N + I+ S + GK + YFYPKD T E S +
Sbjct: 4 VGDKAPLFEGIADNG----EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLL 59
Query: 72 NERNAILLGGSSDNE-----FV-KLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETG 125
+ + +++G SSD+ F K YKL SD + + + G +
Sbjct: 60 KDYDVVVIGVSSDDINSHKRFKEK----------YKLPFILVSDPDKKIRELYGAKGFIL 109
Query: 126 VALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGK 168
R TF+ D + II+HI + +N + E L+ L I+ +
Sbjct: 110 P-ARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEEE 151
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 72.3 bits (178), Expect = 1e-16
Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 28/144 (19%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN 72
+ L T + G W + YFYPKD T TE ++N L+ +F+
Sbjct: 11 LPAATFDLPLSLSGG----TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFD 66
Query: 73 ERNAILLGGSSDNE-----FVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE---- 123
+ A +LG S D+ F SD + +L + E
Sbjct: 67 KAGAKILGVSRDSVKSHDNFCA---------KQGFAFPLVSDGDEALCRAFDVIKEKNMY 117
Query: 124 ----TGVALRATFIFDPQNIIQHI 143
G+ R+TF+ P+ +
Sbjct: 118 GKQVLGI-ERSTFLLSPEGQVVQA 140
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 72.3 bits (178), Expect = 1e-16
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 13/129 (10%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P + ++ + ++ P T VC TE ++N+++
Sbjct: 28 PEAVVVTKD----LQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVD 81
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE----TGVALRATFI 133
+ S D F + + + N SD +++ G+ G+ RA FI
Sbjct: 82 VTVVSMDLPFAQKRFCESFN---IQNVTVASDFRYRDMEKYGVLIGEGALKGILARAVFI 138
Query: 134 FDPQNIIQH 142
D + + +
Sbjct: 139 IDKEGKVAY 147
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 72.4 bits (178), Expect = 2e-16
Identities = 34/144 (23%), Positives = 51/144 (35%), Gaps = 28/144 (19%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN 72
+ L + T S + +W + YFYPKD T TE E+N L+ F
Sbjct: 27 LNHSLLNHPLMLSGS----TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFE 82
Query: 73 ERNAILLGGSSDNE-----FVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE---- 123
+ NA +LG S D+ F SD++ L + E
Sbjct: 83 QINATVLGVSRDSVKSHDSFCA---------KQGFTFPLVSDSDAILCKAFDVIKEKTMY 133
Query: 124 ----TGVALRATFIFDPQNIIQHI 143
G+ R+TF+ P + I
Sbjct: 134 GRQVIGI-ERSTFLIGPTHRIVEA 156
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 68.8 bits (169), Expect = 3e-15
Identities = 34/161 (21%), Positives = 51/161 (31%), Gaps = 25/161 (15%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--- 74
P F L + VI+ F GK + +P T VC T V+ F+ER
Sbjct: 25 PAFTLTGGD----LGVISSDQFRGKSVLLNIFPSVDTPVCATS-------VRTFDERAAA 73
Query: 75 -NAILLGGSSDNEFVKLAWR-RENSNLYKLNHWQFSDTNGSLIDQLGIRHE----TGVAL 128
A +L S D F + + E + S S + G+ G+
Sbjct: 74 SGATVLCVSKDLPFAQKRFCGAEGTENVMP----ASAFRDSFGEDYGVTIADGPMAGLLA 129
Query: 129 RATFIFDPQNIIQHI-TVNNLNVGRNPIETLRILDAIQTGK 168
RA + + + V + N L L A
Sbjct: 130 RAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATSGSH 170
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 66.5 bits (163), Expect = 2e-14
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 18/153 (11%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
F+L + + + F GK K+ P T +C T+ +N+ + + N +
Sbjct: 23 LDFSLTTTD----LSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTV 76
Query: 78 LLGGSSDNEFVKLAWRREN--SNLYKLN-HW--QFSDTNGSLIDQLGIRHETGVALRATF 132
+L S D F + W N L+ ++ F LI+ E + RA F
Sbjct: 77 VLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLIN------EWHLLARAVF 130
Query: 133 IFDPQNIIQHI-TVNNLNVGRNPIETLRILDAI 164
+ D N I+++ V+N+N N + A+
Sbjct: 131 VLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 65.9 bits (161), Expect = 6e-14
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
F L ++ + SSF GK K+ +P T VC + ++N+L + N +
Sbjct: 59 KDFTLVAKDL----SDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTV 112
Query: 78 LLGGSSDNEFVKLAWRREN--SNLYKLNHW---QFSDTNGSLIDQLGIRHETGVALRATF 132
+L SSD F + + SN+ L+ F G I + + G+ RA
Sbjct: 113 VLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITEGPLA---GLTARAVV 169
Query: 133 IFDPQNIIQH 142
+ D Q+ + +
Sbjct: 170 VLDGQDNVIY 179
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 65.0 bits (159), Expect = 7e-14
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 16/131 (12%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
F L + + + F K K+ +P T VC T + ++N+ + N I
Sbjct: 24 ENFILVGND----LADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTI 77
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKL------NHWQFSDTNGSLIDQLGIRHETGVALRAT 131
+L S+D F + + + + G I + G+ RA
Sbjct: 78 VLCISADLPFAQARFCGAE-GIENAKTVSTFRNHALHSQLGVDIQTGPLA---GLTSRAV 133
Query: 132 FIFDPQNIIQH 142
+ D QN + H
Sbjct: 134 IVLDEQNNVLH 144
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 64.6 bits (158), Expect = 9e-14
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F + + + +T + + GK K+ P T VC + ++N D ++ I
Sbjct: 27 PDFTVLDNDL----NQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFN---SDASKEEGI 79
Query: 78 LLGGSSDNEFVKLAWRREN--SNLYKLNHW---QFSDTNGSLIDQLGIRHETGVALRATF 132
+L S+D F + W N+ L+ F + G +++ E + RA F
Sbjct: 80 VLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVME------ELRLLARAVF 133
Query: 133 IFDPQNIIQH 142
+ D N + +
Sbjct: 134 VLDADNKVVY 143
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 61.0 bits (148), Expect = 6e-12
Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 12/130 (9%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F L ++ SF K+ + + +
Sbjct: 29 PSFMLVDDQ----KHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHLK 84
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSD-TNGSLIDQLGIRHET----GVALRATF 132
L+ + D+ R E+ L N S + G+ G A
Sbjct: 85 LIVITVDSPSSLARARHEH-GLP--NIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAII 141
Query: 133 IFDPQNIIQH 142
+ D N++ +
Sbjct: 142 LADAANVVHY 151
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 59.6 bits (145), Expect = 8e-12
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 17/134 (12%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F + + + + + GK I P T VC + +N+ +
Sbjct: 25 PDFTVLTNS----LEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DVN 78
Query: 78 LLGGSSDNEFVKLAWRREN--SNLYKL---NHWQFSDTNGSLIDQLGIRHETGVALRATF 132
+ S+D F + W N + L F + G I E + R+ F
Sbjct: 79 VYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIK------ELRLLARSVF 132
Query: 133 IFDPQNIIQHITVN 146
+ D + +
Sbjct: 133 VLDENGKVVYAEYV 146
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys
peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces
cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 56.5 bits (137), Expect = 9e-11
Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFP--GKWKIFYFYPKDFTFVCPTEISEYNKLVKD 70
IG P +L E+N I+ + +F+ YP+ T + S + ++
Sbjct: 9 IGDPIPDLSLLNEDN----DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQE 64
Query: 71 FNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET--GVAL 128
E A+ G S+D+ + L + SD I LG + G +
Sbjct: 65 LKEYAAV-FGLSADSV-TSQKKFQSK---QNLPYHLLSDPKREFIGLLGAKKTPLSGS-I 118
Query: 129 RATFIFDPQNII 140
R+ FIF +
Sbjct: 119 RSHFIFVDGKLK 130
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal
binding protein; 1.80A {Saccharomyces cerevisiae} SCOP:
c.47.1.10 PDB: 2b7j_A
Length = 200
Score = 41.6 bits (98), Expect = 3e-05
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF---VCPTEISEYNKLVKDFNERNA 76
F+L + TE + GK+ I YF F+ +CP E+ + + + +
Sbjct: 24 FHLEDMYG----NEFTEKNLLGKFSIIYF---GFSNCPDICPDELDKLGLWLNTLSSKYG 76
Query: 77 ILL 79
I L
Sbjct: 77 ITL 79
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold,
structural genomics, montreal-kingsto bacterial
structural genomics initiative, BSGI; 1.70A {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Length = 174
Score = 40.4 bits (95), Expect = 8e-05
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 10/61 (16%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF---VCPTEISEYNKLVKDFNER 74
F ++ K ++ S G+ + F FT +CP + L K
Sbjct: 14 EPFTFQNQDG----KNVSLESLKGEVWLADFI---FTNCETICPPMTAHMTDLQKKLKAE 66
Query: 75 N 75
N
Sbjct: 67 N 67
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin
fold, metal transport, structural genomics,
spine2-complexes; NMR {Homo sapiens}
Length = 171
Score = 40.0 bits (94), Expect = 1e-04
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF---VCPTEISEYNKLVK 69
F+L + + ++ F G+W + YF FT +CP E+ + ++V+
Sbjct: 9 FHLLDHRG----RARCKADFRGQWVLMYF---GFTHCPDICPDELEKLVQVVR 54
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding
protein, mitochondrial assembly factor, redox, nickel,
disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP:
c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A
2gvp_A 2hrf_A 2hrn_A 1wp0_A
Length = 164
Score = 39.6 bits (93), Expect = 1e-04
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF---VCPTEISEYNKLVKDFNERN 75
F+L + T+ + G+W + YF FT VCP E+ + ++V + +
Sbjct: 6 FSLTTHTG----ERKTDKDYLGQWLLIYF---GFTHCPDVCPEELEKMIQVVDEIDSIT 57
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 6 QSLSSYRVIGVKPG-FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF---VCPTEI 61
+ R++ KP F L + S F K + +F FT VCPT +
Sbjct: 4 HTFYGTRLLNPKPVDFALEGPQGP-----VRLSQFQDKVVLLFF---GFTRCPDVCPTTL 55
Query: 62 SEYNKLVK 69
+ +
Sbjct: 56 LALKRAYE 63
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 33.4 bits (77), Expect = 0.015
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 12/91 (13%)
Query: 57 CPT---EISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113
CPT E ++ E + + G ++ + + Q +DT+GS
Sbjct: 37 CPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTF----TQLADTDGS 92
Query: 114 LIDQLGIRHETGVALRATFIFDPQNIIQHIT 144
+ G+ A DP + +
Sbjct: 93 VWANFGVT-----QQPAYAFVDPHGNVDVVR 118
>3me7_A Putative uncharacterized protein; electron transfer protein,
electron transport, structural GE PSI-2, protein
structure initiative; 1.50A {Aquifex aeolicus} PDB:
3me8_A
Length = 170
Score = 33.6 bits (77), Expect = 0.019
Identities = 8/59 (13%), Positives = 13/59 (22%), Gaps = 10/59 (16%)
Query: 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF---VCPTEISEYNKLVKDFNERN 75
L + + GK I +T CP K++
Sbjct: 11 ITLVDSYG----NEFQLKNLKGKPIILSPI---YTHCRAACPLITKSLLKVIPKLGTPG 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.036
Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 33/152 (21%)
Query: 28 VSAFKVITESSFPGKWKIFYFYPKDFTF---VCPTEISE-----YNKLVKDFNERNAILL 79
++KV + K IF+ P + E ++ ++ R+
Sbjct: 171 CLSYKV--QCKMDFK--IFWL-----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 80 GGSSDNEFVKLAWRR-------ENSNLYKLNH-WQFSDTNGSLIDQLGIRHETGVALRAT 131
++ RR EN L L + N + + + + R
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENC-LLVLLNVQ-----NAKAWNAFNLSCKILLTTRFK 275
Query: 132 FIFD--PQNIIQHITVNNLNVGRNPIETLRIL 161
+ D HI++++ ++ P E +L
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Score = 28.7 bits (63), Expect = 1.4
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 46 FYFYPKDFTFVCPTEISEYNKLVKD---FNERNAILLGGSSDNEFVKLAWRRENSNLYKL 102
FY ++C + +Y +LV F + L S + +++A E+ +++
Sbjct: 527 LKFYKP---YICDND-PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 103 NHWQ 106
H Q
Sbjct: 583 AHKQ 586
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 30.7 bits (70), Expect = 0.12
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 18/115 (15%)
Query: 57 CPTEISEYNKLVKDFNERNAILLGGSSDN--EFVKLAWRRENSNLYKLNHWQFSDTNGSL 114
C E K F + ++ + V + Y +N DT+ +
Sbjct: 41 CKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKS-----YGVNFPVVLDTDRQV 95
Query: 115 IDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR-ILDAIQTGK 168
+D + L TF+ +P+ + + G + ++ I+ G+
Sbjct: 96 LDAYDVS-----PLPTTFLINPEGKVVKV-----VTGTMTESMIHDYMNLIKPGE 140
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 29.9 bits (67), Expect = 0.15
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 60 EISEYN-KLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYK-----LNHWQFSDTNGS 113
E+ + D++ L+ D + S+ + L HW F
Sbjct: 25 ELKAVDGIETPDWDAVRLQLVDKIGDES-TTITVAPFGSDQRRDVKLDLRHWAFEPDKED 83
Query: 114 LIDQLGIR 121
+ LGIR
Sbjct: 84 PVSSLGIR 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.28
Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 62/186 (33%)
Query: 8 LSSY---RVIGVKPGFNLPEENNVSA-FKVITESSFPGKWKIF-----------YFYPKD 52
+ +Y R++ +P SA F+ + E G ++ YF
Sbjct: 123 IKNYITARIMAKRPFDKKSN----SALFRAVGE----GNAQLVAIFGGQGNTDDYF---- 170
Query: 53 FTFVCPTEISE----YNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYK----LNH 104
E+ + Y+ LV D + +A L +E ++ + ++ +
Sbjct: 171 ------EELRDLYQTYHVLVGDLIKFSAETL-----SELIRTT--LDAEKVFTQGLNILE 217
Query: 105 WQFSDTNGSLIDQLGIRHETGVALRATFIFDPQN-IIQ--HITVNNLNVGRNPIETLRIL 161
W ++ + L P +IQ H V +G P E L
Sbjct: 218 W---------LENPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 162 DAIQTG 167
TG
Sbjct: 268 KGA-TG 272
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 28.8 bits (65), Expect = 0.60
Identities = 12/112 (10%), Positives = 31/112 (27%), Gaps = 19/112 (16%)
Query: 57 CPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR--ENSNLYKLNHW-QFSDTNGS 113
C N++ + + ++ + D + + + D G
Sbjct: 43 CRQSFPWMNQMQAKYKAKGFQVVAVNLDAK--TGDAMKFLAQVPA----EFTVAFDPKGQ 96
Query: 114 LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165
G++ + +F+ D + +VG P + + I
Sbjct: 97 TPRLYGVK-----GMPTSFLIDRNGKVLLQ-----HVGFRPADKEALEQQIL 138
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 28.6 bits (64), Expect = 0.76
Identities = 23/136 (16%), Positives = 36/136 (26%), Gaps = 24/136 (17%)
Query: 15 GVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFY-----PKDFTFVCPTEISEYNKLVK 69
G+K F A I S GK FYF P + K
Sbjct: 2 GLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPP------SRAFTPQLIDFYK 55
Query: 70 DFNERNAI-LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS--LIDQLGIRHETGV 126
E+ ++ S D ++ + F D G L ++
Sbjct: 56 AHAEKKNFEVMLISWDES--AEDFKDYYAK-MPWLALPFEDRKGMEFLTTGFDVK----- 107
Query: 127 ALRATFIFDPQ--NII 140
++ + NII
Sbjct: 108 SIPTLVGVEADSGNII 123
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 28.1 bits (63), Expect = 1.0
Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 15/117 (12%)
Query: 32 KVITESSFPGKWKIFYFY-----PKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86
+ S +I + P C E+ +K K + + ++G + D
Sbjct: 15 TPQSLQSLKAPVRIVNLWATWCGP------CRKEMPAMSKWYKAQKKGSVDMVGIALDTS 68
Query: 87 FVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHI 143
+ ++ +++ + T + + + T L T + P+ +
Sbjct: 69 DNIGNFLKQ----TPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQT 121
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 27.7 bits (62), Expect = 1.7
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 57 CPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116
C +E+ + K D+ +N +L + + + R+ Y L D + ++
Sbjct: 43 CVSEMPKIIKTANDYKNKNFQVLAVAQPID--PIESVRQYVKDYGLPFTVMYDADKAVGQ 100
Query: 117 QLGIRHETGVALRATFIFDPQNIIQHITV 145
G + + + + I V
Sbjct: 101 AFGTQ-----VYPTSVLIGKKGEILKTYV 124
>1wba_A Winged bean albumin 1; SEED storage protein; 1.80A {Psophocarpus
tetragonolobus} SCOP: b.42.4.1
Length = 175
Score = 27.7 bits (61), Expect = 1.9
Identities = 11/77 (14%), Positives = 18/77 (23%), Gaps = 6/77 (7%)
Query: 52 DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFV---KLAWRRENSNLYKLNHWQFS 108
F + +V + + L G N+ + YKL
Sbjct: 79 KINFATDPHKGDVWSVVDFQPDGQQLKLAGRYPNQVKGAFTIQKGSNTPRTYKLLFCPVG 138
Query: 109 D---TNGSLIDQLGIRH 122
G D G +
Sbjct: 139 SPCKNIGISTDPEGKKR 155
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 27.1 bits (60), Expect = 2.4
Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 22/118 (18%)
Query: 32 KVITESSFPGKWKIFYFY-----PKDFTFVCPTEISEYNKLVKDF-NERNAILLGGSSDN 85
S GK FYF P C + + + + +N ++ S D
Sbjct: 39 DTADMDSLSGKTVFFYFSASWCPP------CRGFTPQLVEFYEKHHDSKNFEIILASWDE 92
Query: 86 EFVKLAWRRENSNLYKLNH-WQFSDTNGSLIDQLGIRHETGVALRATFIFDPQ--NII 140
E + + + + L+ + + +L + + ++ + + +
Sbjct: 93 E--EDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVE-----SIPTLIGLNADTGDTV 143
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 26.9 bits (60), Expect = 2.8
Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 23/123 (18%)
Query: 32 KVITESSFPGKWKIFYFYPKDFTFVCPT---EISEYNKLVKDFNERNAIL------LGGS 82
+V E K + +F ++ C + + N+ + ++ ++
Sbjct: 20 EVTREQLIGEKPTLIHF----WSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDD 75
Query: 83 SDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQH 142
D +K + + F D++ +L D + A ++FD ++H
Sbjct: 76 LDPGKIKETAAE-----HDITQPIFVDSDHALTDAFENE-----YVPAYYVFDKTGQLRH 125
Query: 143 ITV 145
Sbjct: 126 FQA 128
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG,
protein structure initiative, PSI, joint center for S
genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 407
Score = 27.2 bits (61), Expect = 3.3
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 51 KDFTFVCPTEI-------SEYNKLVKDFNERNAILL-GGSS 83
++F F PT+I + + +K+ R + L GG S
Sbjct: 14 ENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGS 54
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP,
chromatin, beta-barrel; NMR {Schizosaccharomyces pombe}
SCOP: b.34.9.2
Length = 109
Score = 25.7 bits (56), Expect = 4.4
Identities = 5/49 (10%), Positives = 15/49 (30%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNK 66
P + E S + + + +F K++ + ++
Sbjct: 24 PSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTS 72
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activa kinase;
HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Length = 336
Score = 26.4 bits (59), Expect = 6.1
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPE 24
+ T+G +L+ K F L E
Sbjct: 182 IYTLGVALAPVHFPHQKTSFVLAE 205
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 25.5 bits (55), Expect = 9.5
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 93 RRENSNLYKLNHWQFSDTNG-SLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV 150
+ N KL F +T LI + I + G D I++ +L+V
Sbjct: 63 EVKCLNFRKLQEIYFIETKKFLLIGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSV 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.415
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,757,983
Number of extensions: 153212
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 60
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)