BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2880
(166 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340789288|ref|YP_004754753.1| peptide deformylase [Collimonas fungivorans Ter331]
gi|340554555|gb|AEK63930.1| Peptide deformylase [Collimonas fungivorans Ter331]
Length = 176
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 131/163 (80%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL I+ YPD+RL KIA+P+T FD LKK+I +M ETMY A G+GLAASQVD+H+QL++
Sbjct: 1 MSLLNILRYPDVRLHKIAKPVTVFDTRLKKLIADMAETMYEAPGVGLAASQVDVHEQLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S L+VFINP+I+W S+EKQIY+EGCLS+PG+++ ++R RI+V AL+ +GK F
Sbjct: 61 IDTSDTGTDLRVFINPEILWASEEKQIYDEGCLSVPGVYDGVERPARIKVRALDADGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 121 EVDADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKAKMLKE 163
>gi|399020096|ref|ZP_10722236.1| peptide deformylase [Herbaspirillum sp. CF444]
gi|398096106|gb|EJL86435.1| peptide deformylase [Herbaspirillum sp. CF444]
Length = 170
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 91/163 (55%), Positives = 131/163 (80%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL KIA+P+T FD LKK++ +M ETMY A G+GLAA+Q+D+H+Q+++
Sbjct: 1 MALLNILRYPDPRLHKIAKPVTVFDDRLKKLVADMAETMYDAPGVGLAATQIDVHEQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S +N+L+VFINP+I W S+EKQ+Y+EGCLS+PGI++ ++R R++ AL+ +GK F
Sbjct: 61 IDVSDASNELRVFINPEITWSSEEKQVYDEGCLSVPGIYDGVERPARVKARALDADGKEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 121 EVEADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLLKE 163
>gi|329913547|ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
gi|327545311|gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
Length = 177
Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 92/162 (56%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL KIA P+T FD LK+++ +M ETMY A G+GLA+SQVD+H+QL+I
Sbjct: 1 MPLLNILRYPDPRLHKIARPVTVFDDRLKQLVADMAETMYDAPGVGLASSQVDVHEQLII 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS N ++L+V INP+I W S E Q+Y+EGCLS+PG+++ ++R RI+V AL+++GK F
Sbjct: 61 VDISDNQSELRVLINPEITWASTEMQLYDEGCLSVPGVYDGVERHARIKVRALDVDGKEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 121 DTTADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLK 162
>gi|445494841|ref|ZP_21461885.1| peptide deformylase 1 [Janthinobacterium sp. HH01]
gi|444791002|gb|ELX12549.1| peptide deformylase 1 [Janthinobacterium sp. HH01]
Length = 180
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 130/163 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL K+A P+T FD L+K++ +M ETMY A GIGLAASQVD+H+QL++
Sbjct: 1 MAILNILRYPDPRLHKVATPVTVFDAKLEKLVADMAETMYDAPGIGLAASQVDVHEQLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ + L +INP+IIW S+EKQ+Y+EGCLS+PGI++ ++R +I+V AL+++G+ F
Sbjct: 61 IDISETKDALVAYINPEIIWASEEKQVYDEGCLSVPGIYDGVERHAQIKVRALDVKGQPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI K +K
Sbjct: 121 EVEADGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKAKLVKE 163
>gi|409408453|ref|ZP_11256888.1| polypeptide deformylase [Herbaspirillum sp. GW103]
gi|386431775|gb|EIJ44603.1| polypeptide deformylase [Herbaspirillum sp. GW103]
Length = 172
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 89/163 (54%), Positives = 126/163 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL KIA P+T FD +KK++ +M ETMY A G+GLAASQVD+H+Q+++
Sbjct: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S LQVFINP+I+W S+EK++Y+EGCLS+PGI++ ++R R++V A + +GK F
Sbjct: 61 IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+ LLA+C+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 121 EVDADDLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKE 163
>gi|395760200|ref|ZP_10440869.1| peptide deformylase [Janthinobacterium lividum PAMC 25724]
Length = 180
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 92/165 (55%), Positives = 129/165 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ YPD RL IA+P+TEFD L+ +I +M ETMY A G+GLAASQVD H Q+++
Sbjct: 1 MSILNILRYPDPRLHTIAKPVTEFDERLQTLIDDMAETMYEAPGVGLAASQVDEHIQMMV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI++ NQLQV INP+I W S+EKQIY+EGCLS+PG+++ ++R RI+V AL+ GK F
Sbjct: 61 IDITEEKNQLQVLINPEITWASEEKQIYDEGCLSVPGVYDGVERPARIKVRALDRHGKQF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E A+GLLA+C+QHE+DH+ GK+F+EYLS K+ RI K +K ++
Sbjct: 121 EQEADGLLAVCIQHEMDHMLGKVFVEYLSPLKRNRIKTKMVKELR 165
>gi|187476716|ref|YP_784740.1| peptide deformylase [Bordetella avium 197N]
gi|115421302|emb|CAJ47807.1| peptide deformylase [Bordetella avium 197N]
Length = 170
Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K+A+P+ D +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLPILRYPDPRLHKVAKPVAVVDDRIRQLVKDMAETMYDAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+ INP+I W S+E Q+Y EGCLS+PGI++++KR+ RIR AL+ +GK+F
Sbjct: 61 IDVSEDGNELRALINPEITWMSEELQVYEEGCLSVPGIYDEVKRAARIRCKALDTDGKVF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E AEGLLA+C+QHEIDHL+GK+F+EYLS K+ RI + K
Sbjct: 121 EFEAEGLLAVCVQHEIDHLDGKVFVEYLSVLKQNRIKTRLKK 162
>gi|398837167|ref|ZP_10594477.1| peptide deformylase [Herbaspirillum sp. YR522]
gi|398209158|gb|EJM95839.1| peptide deformylase [Herbaspirillum sp. YR522]
Length = 172
Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 127/163 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL KIA+P+T FD +K ++ +M ETMY A G+GLAA+Q+D+H+++++
Sbjct: 1 MALLPILRYPDPRLHKIAKPVTVFDERIKTLVADMAETMYDAPGVGLAATQIDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S QLQVFINP+++W S EK++Y+EGCLS+PGI++ ++R R++V A + +G+ F
Sbjct: 61 IDVSDEGKQLQVFINPEVLWASDEKRVYDEGCLSVPGIYDGVERPARVKVRAQDADGQPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+ LLA+C+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 121 EVEADDLLAVCIQHEMDHLEGKVFVEYLSPLKRNRIKTKLQKE 163
>gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1]
gi|300076747|gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1]
Length = 172
Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 127/163 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL KIA P+T FD +KK++ +M ETMY A G+GLAA+QVD+H+Q+++
Sbjct: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + LQVFINP+I+W S++K++Y+EGCLS+PGI++ ++R R++V A + +GK F
Sbjct: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+ LLA+C+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKE 163
>gi|422323718|ref|ZP_16404757.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
gi|317401262|gb|EFV81903.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
Length = 170
Score = 208 bits (530), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K A+P+ E D +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +NQL V INP+I W S + +IY EGCLS+PGI+++++R+ RIR AL+I+GK F
Sbjct: 61 IDVSEESNQLLVLINPEITWRSDDYKIYEEGCLSVPGIYDEVERASRIRCKALDIDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLLA+C+QHE+DHL GK+F+EYLSN K+ RI K K
Sbjct: 121 EFDADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKK 162
>gi|421483689|ref|ZP_15931262.1| peptide deformylase [Achromobacter piechaudii HLE]
gi|400197972|gb|EJO30935.1| peptide deformylase [Achromobacter piechaudii HLE]
Length = 170
Score = 207 bits (528), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K A+P+ E D +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+++NQL INP+I W S + +IY EGCLS+PG++++++R+ RIR AL+I+GK F
Sbjct: 61 IDVSEDSNQLLTLINPEITWRSDDHKIYEEGCLSVPGVYDEVERASRIRCKALDIDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLLA+C+QHE+DHL GK+F+EYLSN K+ RI K K
Sbjct: 121 EFEADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKK 162
>gi|423014486|ref|ZP_17005207.1| peptide deformylase [Achromobacter xylosoxidans AXX-A]
gi|338782489|gb|EGP46862.1| peptide deformylase [Achromobacter xylosoxidans AXX-A]
Length = 170
Score = 207 bits (528), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K A+P+ E D +++++ +M +TMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +NQL V INP+I W+S + +IY EGCLS+PGI+++++R+ RIR AL+I+GK F
Sbjct: 61 IDVSEESNQLLVLINPEITWHSDDYKIYEEGCLSVPGIYDEVERASRIRCKALDIDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLLA+C+QHE+DHL GK+F+EYLSN K+ RI K K
Sbjct: 121 EFEADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKK 162
>gi|134093408|ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicoxydans]
gi|133737311|emb|CAL60354.1| Peptide deformylase (PDF) [Herminiimonas arsenicoxydans]
Length = 176
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 127/162 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ YPD RL KIA+P+T FD +K ++ +M ETMY A G+GLAASQVD+H+Q+++
Sbjct: 1 MSILNILRYPDSRLHKIAKPVTTFDARIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ +L+ +INP++IW S E QIY+EGCLS+PG+++ ++R +++V A + +GK F
Sbjct: 61 IDTSETRTELRAYINPELIWVSPEMQIYDEGCLSVPGVYDGVERHAKVKVRAYDADGKQF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 121 ELEAEGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKMLK 162
>gi|293602354|ref|ZP_06684800.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
gi|292819116|gb|EFF78151.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
Length = 170
Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K A+P+ E D +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+++N+L INP+I W S + +IY EGCLS+PGI+++++R+ RIR AL+I+GK F
Sbjct: 61 IDVSEDSNELLALINPEITWRSDDHKIYEEGCLSVPGIYDEVERASRIRCKALDIDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLLA+C+QHE+DHL GK+F+EYLSN K+ RI K K
Sbjct: 121 EFEADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKK 162
>gi|311109268|ref|YP_003982121.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
gi|310763957|gb|ADP19406.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
Length = 170
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K A+P+ E D +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+++NQL V INP+I W+S + +IY EGCLS+PG+++ ++R+ RIR AL+++GK F
Sbjct: 61 IDVSEDSNQLLVLINPEITWHSDDYKIYEEGCLSVPGVYDDVERASRIRCKALDVDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLLA+C+QHE+DHL GK+F+EYLS+ K+ RI + K
Sbjct: 121 EFEADGLLAVCVQHELDHLEGKVFVEYLSSLKQNRIKTRLKK 162
>gi|415915652|ref|ZP_11553890.1| Peptide deformylase [Herbaspirillum frisingense GSF30]
gi|407761641|gb|EKF70663.1| Peptide deformylase [Herbaspirillum frisingense GSF30]
Length = 172
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 126/163 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL KIA+P+T FD +K+++ +M ETMY A G+GLAA+QVD+H+Q+++
Sbjct: 1 MAQLNILRYPDPRLHKIAQPVTVFDARIKQLVADMAETMYAAPGVGLAATQVDVHEQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S LQVFINP+I+W S+EK++Y+EGCLS+PGI++ ++R R++V A + +GK F
Sbjct: 61 IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+ LLA+C+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 121 ELDADDLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKE 163
>gi|221201858|ref|ZP_03574895.1| peptide deformylase [Burkholderia multivorans CGD2M]
gi|221207636|ref|ZP_03580644.1| peptide deformylase [Burkholderia multivorans CGD2]
gi|221214668|ref|ZP_03587638.1| peptide deformylase [Burkholderia multivorans CGD1]
gi|421476806|ref|ZP_15924669.1| peptide deformylase [Burkholderia multivorans CF2]
gi|221165558|gb|EED98034.1| peptide deformylase [Burkholderia multivorans CGD1]
gi|221172482|gb|EEE04921.1| peptide deformylase [Burkholderia multivorans CGD2]
gi|221178278|gb|EEE10688.1| peptide deformylase [Burkholderia multivorans CGD2M]
gi|400227648|gb|EJO57636.1| peptide deformylase [Burkholderia multivorans CF2]
Length = 181
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 15 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+ FINP+IIW S KQ+Y EGCLS+PGI+++++R R+RV ALN +G+ F
Sbjct: 75 IDVSEDKNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGETF 134
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 135 ELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKK 176
>gi|359799911|ref|ZP_09302463.1| peptide deformylase [Achromobacter arsenitoxydans SY8]
gi|359362023|gb|EHK63768.1| peptide deformylase [Achromobacter arsenitoxydans SY8]
Length = 170
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 127/162 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K A+P+ E D +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +NQL INP+I W S + +IY EGCLS+PG++++++R+ RIR AL+I+GK F
Sbjct: 61 IDVSEESNQLLTLINPEITWRSDDYKIYEEGCLSVPGVYDEVERASRIRCKALDIDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLLA+C+QHE+DHL GK+F+EYLSN K+ RI K K
Sbjct: 121 EFEADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKK 162
>gi|332285819|ref|YP_004417730.1| peptide deformylase [Pusillimonas sp. T7-7]
gi|330429772|gb|AEC21106.1| peptide deformylase [Pusillimonas sp. T7-7]
Length = 170
Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 130/166 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K+A+P+ E D +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLPILRYPDPRLHKVAKPVQEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N L V INP+I+W S E Q+Y EGCLS+PG++++++RS RIRV ALN +G+ +
Sbjct: 61 IDVSEDGNDLIVLINPEILWKSDEVQVYEEGCLSVPGVYDEVERSARIRVRALNEQGEPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E AEGLLA+C+QHE+DHL GK+F+EYLS K+ RI + K ++
Sbjct: 121 EFDAEGLLAVCVQHELDHLLGKVFVEYLSVLKQNRIKTRLRKQERE 166
>gi|237746966|ref|ZP_04577446.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
gi|229378317|gb|EEO28408.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
Length = 183
Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ YPD RL K + P+T FD LK ++ NM +TMY A G+GLAA QV+ H+Q+++
Sbjct: 1 MARLPILRYPDPRLLKPSRPVTSFDSELKTLVENMAQTMYEAPGVGLAAPQVNAHRQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L VFINP+II S+EK ++ EGCLSLPGI+++I+R R+ V A +++GK F
Sbjct: 61 IDVSEKRNELHVFINPQIIKASEEKTLFEEGCLSLPGIYDEIERPARVTVRAQDVDGKAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLA+C+QHEIDHL G++F++YLS K+ RI KK LK
Sbjct: 121 EMEAEGLLAVCVQHEIDHLKGRVFVDYLSPMKRNRIKKKLLK 162
>gi|161526293|ref|YP_001581305.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
gi|160343722|gb|ABX16808.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
Length = 181
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 15 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+ FINP+IIW S KQ+Y EGCLS+PGI+++++R R+RV ALN +G+ F
Sbjct: 75 IDVSEDKNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGETF 134
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 135 ELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKK 176
>gi|189348993|ref|YP_001944621.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
gi|421470699|ref|ZP_15919060.1| peptide deformylase [Burkholderia multivorans ATCC BAA-247]
gi|189333015|dbj|BAG42085.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
gi|400227112|gb|EJO57127.1| peptide deformylase [Burkholderia multivorans ATCC BAA-247]
Length = 167
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+ FINP+IIW S KQ+Y EGCLS+PGI+++++R R+RV ALN +G+ F
Sbjct: 61 IDVSEDKNELRAFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKK 162
>gi|172062105|ref|YP_001809757.1| peptide deformylase [Burkholderia ambifaria MC40-6]
gi|171994622|gb|ACB65541.1| peptide deformylase [Burkholderia ambifaria MC40-6]
Length = 167
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ N+L+ FINP+IIW S EKQIY EGCLS+PGI+++++R +RV ALN +G+ F
Sbjct: 61 IDISEEKNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKK 162
>gi|427402492|ref|ZP_18893489.1| peptide deformylase 1 [Massilia timonae CCUG 45783]
gi|425718298|gb|EKU81245.1| peptide deformylase 1 [Massilia timonae CCUG 45783]
Length = 179
Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 128/164 (78%), Gaps = 1/164 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN-LKKIIFNMTETMYHAMGIGLAASQVDIHKQLL 59
M LL I+ YPD RL K+A+P+TEF L+K++ +M ETMY A G+GLAA+QVD+H++++
Sbjct: 1 MALLDILRYPDPRLHKVAKPVTEFGTERLRKLVADMAETMYDAPGVGLAATQVDVHERVV 60
Query: 60 ILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+D+++ +L VFINP+I W S+EKQ+Y+EGCLS+PGI++ ++R R++V A +++GK
Sbjct: 61 TIDVTEAQEKLMVFINPEITWASEEKQVYDEGCLSVPGIYDGVERPARVKVRAFDVDGKP 120
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
FE+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 121 FEVEADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKAKLQKE 164
>gi|115353233|ref|YP_775072.1| peptide deformylase [Burkholderia ambifaria AMMD]
gi|115283221|gb|ABI88738.1| peptide deformylase [Burkholderia ambifaria AMMD]
Length = 167
Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ N+L+ FINP+IIW S EKQIY EGCLS+PGI+++++R +RV ALN +G+ F
Sbjct: 61 IDISEEKNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKK 162
>gi|170697716|ref|ZP_02888803.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
gi|170137331|gb|EDT05572.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
Length = 167
Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ N+L+ FINP+IIW S EKQIY EGCLS+PGI+++++R +RV ALN +G+ F
Sbjct: 61 IDISEEKNELRAFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKK 162
>gi|171319440|ref|ZP_02908545.1| peptide deformylase [Burkholderia ambifaria MEX-5]
gi|171095332|gb|EDT40313.1| peptide deformylase [Burkholderia ambifaria MEX-5]
Length = 167
Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ N+L+ FINP+IIW S EKQ+Y EGCLS+PGI+++++R +RV ALN +G+ F
Sbjct: 61 IDISEEKNELRAFINPEIIWSSDEKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGEAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKK 162
>gi|78067947|ref|YP_370716.1| peptide deformylase [Burkholderia sp. 383]
gi|77968692|gb|ABB10072.1| peptide deformylase [Burkholderia sp. 383]
Length = 167
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L+ FINP+I+W S EKQIY EGCLS+PGI+++++R +RV ALN +G+ F
Sbjct: 61 IDVSEEKNELRAFINPEIVWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKK 162
>gi|167561029|ref|ZP_02353945.1| peptide deformylase [Burkholderia oklahomensis EO147]
gi|167568291|ref|ZP_02361165.1| peptide deformylase [Burkholderia oklahomensis C6786]
Length = 167
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 130/162 (80%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D +++++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+VFINP+I+W KQ+Y EGCLS+PG++++++R R+RV ALN +G+ F
Sbjct: 61 IDVSEDKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALNEQGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI EGLLA+C+QHE+DHL G++F++YLS+ K+ RI K K
Sbjct: 121 EIDCEGLLAVCVQHEMDHLMGRVFVQYLSSLKQSRIKTKMKK 162
>gi|171464332|ref|YP_001798445.1| peptide deformylase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|238692833|sp|B1XSN2.1|DEF_POLNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|171193870|gb|ACB44831.1| peptide deformylase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 171
Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ YPD RL K+A+P+ + D +KKI+ +M +TMY A G+GLAA+QVDIH+++++
Sbjct: 1 MALLTVLCYPDSRLHKVAKPVAQVDARIKKIVADMADTMYEAPGVGLAATQVDIHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S N+L VFINP+I+W S E + + EGCLS+P +++++R IRV AL+I+GK F
Sbjct: 61 IDVSDEQNELMVFINPEIVWTSSETKSWREGCLSVPEFYDEVERPAEIRVKALDIDGKEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+G LA+CLQHE+DHL GK+F+EYLS FK+ RI +K K K+
Sbjct: 121 EIEADGSLAVCLQHELDHLQGKVFVEYLSIFKRTRISQKMKKRAKE 166
>gi|152981308|ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
gi|151281385|gb|ABR89795.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
Length = 178
Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 128/163 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ YPD RL K+A+P++ FD +K ++ +M ETMY A G+GLAASQVD+H+Q+++
Sbjct: 1 MSILNILRYPDPRLHKVAKPVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ + +L+ +INP+IIW S E Q+Y+EGCLS+PG+++ ++R +++V A + +GK F
Sbjct: 61 IDTSETHTELRAYINPEIIWASPEMQVYDEGCLSVPGVYDGVERHAKVKVRAFDADGKQF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 121 ELEADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKE 163
>gi|124385914|ref|YP_001028237.1| peptide deformylase [Burkholderia mallei NCTC 10229]
gi|254203663|ref|ZP_04910023.1| polypeptide deformylase [Burkholderia mallei FMH]
gi|124293934|gb|ABN03203.1| peptide deformylase [Burkholderia mallei NCTC 10229]
gi|147745175|gb|EDK52255.1| polypeptide deformylase [Burkholderia mallei FMH]
Length = 216
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 50 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 109
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+VFINP+I+W KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ F
Sbjct: 110 IDVSEDKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGESF 169
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 170 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKK 211
>gi|254251081|ref|ZP_04944399.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
gi|124893690|gb|EAY67570.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
Length = 167
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 127/162 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L+ FINP+I+W S KQ+Y EGCLS+PGI+++++R R+RV ALN G+ F
Sbjct: 61 IDVSEEKNELRAFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDRVRVRALNENGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKK 162
>gi|300692919|ref|YP_003753914.1| peptide deformylase [Ralstonia solanacearum PSI07]
gi|299079979|emb|CBJ52656.1| peptide deformylase [Ralstonia solanacearum PSI07]
gi|344168508|emb|CCA80798.1| peptide deformylase [blood disease bacterium R229]
Length = 169
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 129/156 (82%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ E D ++K++ +M ETMY A GIGLAA+QVD+H++++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAEVDGRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W SKE+++++EGCLS+P I++K++R R+RV ALN +G+ F
Sbjct: 61 IDVSESRDELRVFINPEILWASKERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 121 ELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRI 156
>gi|134284113|ref|ZP_01770807.1| polypeptide deformylase [Burkholderia pseudomallei 305]
gi|76578939|gb|ABA48414.1| peptide deformylase [Burkholderia pseudomallei 1710b]
gi|134244565|gb|EBA44669.1| polypeptide deformylase [Burkholderia pseudomallei 305]
Length = 201
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 35 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 94
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+VFINP+I+W KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ F
Sbjct: 95 IDVSEDKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPF 154
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 155 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKK 196
>gi|237749120|ref|ZP_04579600.1| peptide deformylase [Oxalobacter formigenes OXCC13]
gi|229380482|gb|EEO30573.1| peptide deformylase [Oxalobacter formigenes OXCC13]
Length = 208
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 90/162 (55%), Positives = 126/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ YPD RL K + P+T+F +LK +I +M +TMY A G+GLAA Q+++HKQL++
Sbjct: 30 MARLPILRYPDPRLLKPSRPVTDFGDSLKSLIADMAQTMYEAPGVGLAAPQINVHKQLIV 89
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L+VFINP+I+ S+EK I+ EGCLSLPGI+++I+R ++ V AL+ GK F
Sbjct: 90 IDVSEQKNELRVFINPQIVKASEEKAIFEEGCLSLPGIYDEIERPAKVTVRALDANGKEF 149
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLA+C+QHEIDHL G IF++YLS K+ RI KK LK
Sbjct: 150 ELEAEGLLAVCVQHEIDHLKGSIFVDYLSPMKRNRIKKKLLK 191
>gi|167585076|ref|ZP_02377464.1| peptide deformylase [Burkholderia ubonensis Bu]
Length = 167
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL II+YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNIIHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ ++L+ FINP+++W S KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ F
Sbjct: 61 IDISEDKSELRAFINPELVWSSDAKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKSKMKK 162
>gi|416923488|ref|ZP_11932797.1| peptide deformylase [Burkholderia sp. TJI49]
gi|325526701|gb|EGD04225.1| peptide deformylase [Burkholderia sp. TJI49]
Length = 167
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 127/162 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L+ FINP+IIW S KQ+Y EGCLS+PGI+++++R +RV ALN +G+ F
Sbjct: 61 IDVSEEKNELRAFINPEIIWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQSRIKTKMKK 162
>gi|284159413|ref|YP_440687.3| peptide deformylase [Burkholderia thailandensis E264]
gi|83652775|gb|ABC36838.1| peptide deformylase [Burkholderia thailandensis E264]
Length = 179
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 130/162 (80%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D +++++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 13 MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 72
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+VFINP+I+W S KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ F
Sbjct: 73 IDVSEDKNELRVFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGEPF 132
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 133 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKK 174
>gi|402565109|ref|YP_006614454.1| peptide deformylase [Burkholderia cepacia GG4]
gi|402246306|gb|AFQ46760.1| peptide deformylase [Burkholderia cepacia GG4]
Length = 167
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 127/162 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDQVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ N+L+ FINP++IW S KQ+Y EGCLS+PGI+++++R +RV ALN +G+ F
Sbjct: 61 IDISEEKNELRAFINPELIWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKK 162
>gi|126449977|ref|YP_001081879.1| polypeptide deformylase [Burkholderia mallei NCTC 10247]
gi|251767985|ref|ZP_02269083.2| peptide deformylase [Burkholderia mallei PRL-20]
gi|254177135|ref|ZP_04883792.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
gi|126242847|gb|ABO05940.1| peptide deformylase [Burkholderia mallei NCTC 10247]
gi|160698176|gb|EDP88146.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
gi|243061150|gb|EES43336.1| peptide deformylase [Burkholderia mallei PRL-20]
Length = 179
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 13 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+VFINP+I+W KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ F
Sbjct: 73 IDVSEDKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGESF 132
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 133 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKK 174
>gi|170734476|ref|YP_001766423.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
gi|254246863|ref|ZP_04940184.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184]
gi|124871639|gb|EAY63355.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184]
gi|169817718|gb|ACA92301.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
Length = 167
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 127/162 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L+ FINP+I+W S KQIY EGCLS+PGI+++++R +RV ALN +G+ F
Sbjct: 61 IDVSEEKNELRAFINPEIVWSSDAKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKK 162
>gi|145590257|ref|YP_001156854.1| peptide deformylase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145048663|gb|ABP35290.1| peptide deformylase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 171
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 130/166 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ YPD RL K+A+P+ + D ++KI+ +M +TMY A G+GLAA+QVDIH+++++
Sbjct: 1 MALLTVLCYPDQRLHKVAKPVAQVDARIQKIVADMADTMYDAPGVGLAATQVDIHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + N+L VFINP+I+W S EK+ + EGCLS+P +++++R IRV ALN++G+ F
Sbjct: 61 IDVSDDQNELMVFINPEIVWASPEKKSWREGCLSVPEFYDEVERPAEIRVKALNLKGEEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GLLA+CLQHE+DHL GK+F+EYLS K+ RI +K K +K+
Sbjct: 121 ELEADGLLAVCLQHELDHLQGKVFVEYLSMLKQVRISQKMKKRLKE 166
>gi|126441948|ref|YP_001057204.1| polypeptide deformylase [Burkholderia pseudomallei 668]
gi|126453149|ref|YP_001064443.1| polypeptide deformylase [Burkholderia pseudomallei 1106a]
gi|217424946|ref|ZP_03456442.1| peptide deformylase [Burkholderia pseudomallei 576]
gi|226194603|ref|ZP_03790198.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
gi|237810338|ref|YP_002894789.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
gi|242315752|ref|ZP_04814768.1| peptide deformylase [Burkholderia pseudomallei 1106b]
gi|254182253|ref|ZP_04888850.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
gi|254197101|ref|ZP_04903524.1| polypeptide deformylase [Burkholderia pseudomallei S13]
gi|126221441|gb|ABN84947.1| peptide deformylase [Burkholderia pseudomallei 668]
gi|126226791|gb|ABN90331.1| peptide deformylase [Burkholderia pseudomallei 1106a]
gi|169653843|gb|EDS86536.1| polypeptide deformylase [Burkholderia pseudomallei S13]
gi|184212791|gb|EDU09834.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
gi|217391966|gb|EEC31992.1| peptide deformylase [Burkholderia pseudomallei 576]
gi|225933304|gb|EEH29296.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
gi|237506162|gb|ACQ98480.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
gi|242138991|gb|EES25393.1| peptide deformylase [Burkholderia pseudomallei 1106b]
Length = 179
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 13 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+VFINP+I+W KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ F
Sbjct: 73 IDVSEDKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPF 132
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 133 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKK 174
>gi|167579358|ref|ZP_02372232.1| peptide deformylase [Burkholderia thailandensis TXDOH]
gi|167617459|ref|ZP_02386090.1| peptide deformylase [Burkholderia thailandensis Bt4]
gi|257140665|ref|ZP_05588927.1| peptide deformylase [Burkholderia thailandensis E264]
Length = 167
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 130/162 (80%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D +++++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+VFINP+I+W S KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ F
Sbjct: 61 IDVSEDKNELRVFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGEPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKK 162
>gi|53724672|ref|YP_101982.1| peptide deformylase [Burkholderia mallei ATCC 23344]
gi|67642453|ref|ZP_00441209.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
gi|121600699|ref|YP_994101.1| peptide deformylase [Burkholderia mallei SAVP1]
gi|254208639|ref|ZP_04914987.1| polypeptide deformylase [Burkholderia mallei JHU]
gi|254360307|ref|ZP_04976577.1| polypeptide deformylase [Burkholderia mallei 2002721280]
gi|52428095|gb|AAU48688.1| polypeptide deformylase [Burkholderia mallei ATCC 23344]
gi|121229509|gb|ABM52027.1| polypeptide deformylase [Burkholderia mallei SAVP1]
gi|147750515|gb|EDK57584.1| polypeptide deformylase [Burkholderia mallei JHU]
gi|148029547|gb|EDK87452.1| polypeptide deformylase [Burkholderia mallei 2002721280]
gi|238523609|gb|EEP87046.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
Length = 167
Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+VFINP+I+W KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ F
Sbjct: 61 IDVSEDKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKK 162
>gi|163859048|ref|YP_001633346.1| peptide deformylase [Bordetella petrii DSM 12804]
gi|163262776|emb|CAP45079.1| polypeptide deformylase [Bordetella petrii]
Length = 170
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 126/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K A+P+ D ++K++ +M +TMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLSILHYPDPRLHKKAKPVAVVDDRIRKLVRDMADTMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L+V INP+I W S E+Q Y EGCLS+PGI+++++R+ RIR AL+ +G +
Sbjct: 61 IDVSEEGNELRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRYRALDADGNPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E AEGLLA+C+QHE+DHL+GK+F+EYLS+ K+ RI K K
Sbjct: 121 EAEAEGLLAVCVQHELDHLDGKVFVEYLSSLKQNRIKTKLKK 162
>gi|83748633|ref|ZP_00945651.1| Peptide deformylase [Ralstonia solanacearum UW551]
gi|83724677|gb|EAP71837.1| Peptide deformylase [Ralstonia solanacearum UW551]
Length = 169
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 128/156 (82%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A GIGLAA+QVD+H++++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W S+E+++++EGCLS+P I++K++R R+RV ALN +G+ F
Sbjct: 61 IDVSESRDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 121 ELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRI 156
>gi|53717762|ref|YP_106748.1| peptide deformylase [Burkholderia pseudomallei K96243]
gi|162210090|ref|YP_331761.2| peptide deformylase [Burkholderia pseudomallei 1710b]
gi|167717517|ref|ZP_02400753.1| polypeptide deformylase [Burkholderia pseudomallei DM98]
gi|167736559|ref|ZP_02409333.1| polypeptide deformylase [Burkholderia pseudomallei 14]
gi|167813633|ref|ZP_02445313.1| polypeptide deformylase [Burkholderia pseudomallei 91]
gi|167822177|ref|ZP_02453648.1| polypeptide deformylase [Burkholderia pseudomallei 9]
gi|167843768|ref|ZP_02469276.1| polypeptide deformylase [Burkholderia pseudomallei B7210]
gi|167892270|ref|ZP_02479672.1| polypeptide deformylase [Burkholderia pseudomallei 7894]
gi|167900763|ref|ZP_02487968.1| polypeptide deformylase [Burkholderia pseudomallei NCTC 13177]
gi|167908987|ref|ZP_02496078.1| polypeptide deformylase [Burkholderia pseudomallei 112]
gi|167917029|ref|ZP_02504120.1| polypeptide deformylase [Burkholderia pseudomallei BCC215]
gi|254188218|ref|ZP_04894730.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
gi|254258214|ref|ZP_04949268.1| peptide deformylase [Burkholderia pseudomallei 1710a]
gi|386860240|ref|YP_006273189.1| peptide deformylase [Burkholderia pseudomallei 1026b]
gi|418375559|ref|ZP_12965632.1| peptide deformylase [Burkholderia pseudomallei 354a]
gi|418537467|ref|ZP_13103107.1| peptide deformylase [Burkholderia pseudomallei 1026a]
gi|418545232|ref|ZP_13110492.1| peptide deformylase [Burkholderia pseudomallei 1258a]
gi|418551624|ref|ZP_13116534.1| peptide deformylase [Burkholderia pseudomallei 1258b]
gi|418552169|ref|ZP_13117059.1| peptide deformylase [Burkholderia pseudomallei 354e]
gi|52208176|emb|CAH34107.1| peptide deformylase [Burkholderia pseudomallei K96243]
gi|157935898|gb|EDO91568.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
gi|254216903|gb|EET06287.1| peptide deformylase [Burkholderia pseudomallei 1710a]
gi|385346523|gb|EIF53199.1| peptide deformylase [Burkholderia pseudomallei 1258a]
gi|385347343|gb|EIF54000.1| peptide deformylase [Burkholderia pseudomallei 1258b]
gi|385350176|gb|EIF56728.1| peptide deformylase [Burkholderia pseudomallei 1026a]
gi|385373566|gb|EIF78586.1| peptide deformylase [Burkholderia pseudomallei 354e]
gi|385378239|gb|EIF82721.1| peptide deformylase [Burkholderia pseudomallei 354a]
gi|385657368|gb|AFI64791.1| peptide deformylase [Burkholderia pseudomallei 1026b]
Length = 167
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L+VFINP+I+W KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ F
Sbjct: 61 IDVSEDKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKK 162
>gi|421891365|ref|ZP_16322170.1| peptide deformylase [Ralstonia solanacearum K60-1]
gi|378963313|emb|CCF98918.1| peptide deformylase [Ralstonia solanacearum K60-1]
Length = 169
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 128/156 (82%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A G+GLAA+QVD+H++++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGVGLAATQVDVHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W S+E+++++EGCLS+P I++K++R R+RV ALN +G+ F
Sbjct: 61 IDVSESRDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 121 ELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRI 156
>gi|207741949|ref|YP_002258341.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
[Ralstonia solanacearum IPO1609]
gi|206593335|emb|CAQ60262.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
[Ralstonia solanacearum IPO1609]
Length = 174
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 128/156 (82%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A GIGLAA+QVD+H++++
Sbjct: 6 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W S+E+++++EGCLS+P I++K++R R+RV ALN +G+ F
Sbjct: 66 IDVSESRDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 125
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 126 ELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRI 161
>gi|421899589|ref|ZP_16329952.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
[Ralstonia solanacearum MolK2]
gi|206590795|emb|CAQ56407.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
[Ralstonia solanacearum MolK2]
Length = 174
Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 128/156 (82%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A GIGLAA+QVD+H++++
Sbjct: 6 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W S+E+++++EGCLS+P I++K++R R+RV ALN +G+ F
Sbjct: 66 IDVSESRDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 125
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 126 ELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRI 161
>gi|167834978|ref|ZP_02461861.1| peptide deformylase [Burkholderia thailandensis MSMB43]
Length = 167
Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L+VFINP+++W S KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ F
Sbjct: 61 IDVSEEKNELRVFINPELVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 121 EIDCEGLLAVCIQHEMDHLIGRVFVQYLSPLKQTRIKTKMKK 162
>gi|456064440|ref|YP_007503410.1| Peptide deformylase [beta proteobacterium CB]
gi|455441737|gb|AGG34675.1| Peptide deformylase [beta proteobacterium CB]
Length = 171
Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 126/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ YPD RL K+A+P+ + D +KKI+ +M ETMY A G+GLAA+QVDIH+++++
Sbjct: 1 MALLTVLCYPDPRLHKVAKPVAQVDARIKKIVADMAETMYDAPGVGLAATQVDIHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S N N+L VFINP+++W S EK+ + EGCLS+P ++++ R +RV AL+I GK F
Sbjct: 61 IDVSDNQNELMVFINPELVWASSEKKSWREGCLSVPEYYDEVDRPAVVRVKALDINGKEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GLL++CLQHE+DHL GK+F+EYLS K+ RI K K K+
Sbjct: 121 EVEADGLLSVCLQHEMDHLQGKVFVEYLSMLKRNRISLKMKKRAKE 166
>gi|107024058|ref|YP_622385.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
gi|116691145|ref|YP_836768.1| peptide deformylase [Burkholderia cenocepacia HI2424]
gi|206558867|ref|YP_002229627.1| peptide deformylase [Burkholderia cenocepacia J2315]
gi|421865399|ref|ZP_16297077.1| Peptide deformylase [Burkholderia cenocepacia H111]
gi|444360692|ref|ZP_21161879.1| peptide deformylase [Burkholderia cenocepacia BC7]
gi|444373416|ref|ZP_21172781.1| peptide deformylase [Burkholderia cenocepacia K56-2Valvano]
gi|105894247|gb|ABF77412.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
gi|116649234|gb|ABK09875.1| peptide deformylase [Burkholderia cenocepacia HI2424]
gi|198034904|emb|CAR50776.1| peptide deformylase [Burkholderia cenocepacia J2315]
gi|358074617|emb|CCE47955.1| Peptide deformylase [Burkholderia cenocepacia H111]
gi|443591764|gb|ELT60630.1| peptide deformylase [Burkholderia cenocepacia K56-2Valvano]
gi|443599595|gb|ELT67860.1| peptide deformylase [Burkholderia cenocepacia BC7]
Length = 167
Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 126/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L+ FINP+I+W S KQ Y EGCLS+PGI+++++R +RV ALN +G+ F
Sbjct: 61 IDVSEEKNELRAFINPEIVWSSDAKQTYEEGCLSVPGIYDEVERPDHVRVRALNEQGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKK 162
>gi|33591756|ref|NP_879400.1| peptide deformylase [Bordetella pertussis Tohama I]
gi|33594959|ref|NP_882602.1| peptide deformylase [Bordetella parapertussis 12822]
gi|33599236|ref|NP_886796.1| peptide deformylase [Bordetella bronchiseptica RB50]
gi|384203059|ref|YP_005588798.1| peptide deformylase [Bordetella pertussis CS]
gi|408417247|ref|YP_006627954.1| polypeptide deformylase [Bordetella pertussis 18323]
gi|410418044|ref|YP_006898493.1| polypeptide deformylase [Bordetella bronchiseptica MO149]
gi|410471042|ref|YP_006894323.1| peptide deformylase [Bordetella parapertussis Bpp5]
gi|412340462|ref|YP_006969217.1| polypeptide deformylase [Bordetella bronchiseptica 253]
gi|427812497|ref|ZP_18979561.1| polypeptide deformylase [Bordetella bronchiseptica 1289]
gi|427817533|ref|ZP_18984596.1| polypeptide deformylase [Bordetella bronchiseptica D445]
gi|427823276|ref|ZP_18990338.1| polypeptide deformylase [Bordetella bronchiseptica Bbr77]
gi|39931022|sp|Q7VS88.1|DEF2_BORPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|39931030|sp|Q7W1V3.1|DEF1_BORPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|39931046|sp|Q7WQS9.1|DEF1_BORBR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|33565035|emb|CAE39984.1| polypeptide deformylase [Bordetella parapertussis]
gi|33571399|emb|CAE44880.1| polypeptide deformylase [Bordetella pertussis Tohama I]
gi|33575282|emb|CAE30745.1| polypeptide deformylase [Bordetella bronchiseptica RB50]
gi|332381173|gb|AEE66020.1| peptide deformylase [Bordetella pertussis CS]
gi|401779417|emb|CCJ64939.1| polypeptide deformylase [Bordetella pertussis 18323]
gi|408441152|emb|CCJ47575.1| peptide deformylase [Bordetella parapertussis Bpp5]
gi|408445339|emb|CCJ56988.1| polypeptide deformylase [Bordetella bronchiseptica MO149]
gi|408770296|emb|CCJ55087.1| polypeptide deformylase [Bordetella bronchiseptica 253]
gi|410563497|emb|CCN21031.1| polypeptide deformylase [Bordetella bronchiseptica 1289]
gi|410568533|emb|CCN16576.1| polypeptide deformylase [Bordetella bronchiseptica D445]
gi|410588541|emb|CCN03600.1| polypeptide deformylase [Bordetella bronchiseptica Bbr77]
Length = 170
Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K A+P+ D +++++ +M +TMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N L+V INP+I W S E+Q Y EGCLS+PGI+++++R+ RIR AL+ +G+ +
Sbjct: 61 IDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLLA+C+QHEIDHL+GK+F+EYLSN K+ RI K K
Sbjct: 121 EFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKK 162
>gi|344173218|emb|CCA88359.1| peptide deformylase [Ralstonia syzygii R24]
Length = 169
Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 128/156 (82%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ E ++K++ +M ETMY A GIGLAA+QVD+H++++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAEVGGRIRKLVADMAETMYEAPGIGLAATQVDVHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W SKE+++++EGCLS+P I++K++R R+RV ALN +G+ F
Sbjct: 61 IDVSESRDELRVFINPEILWASKERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 121 ELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRI 156
>gi|238028945|ref|YP_002913176.1| polypeptide deformylase [Burkholderia glumae BGR1]
gi|237878139|gb|ACR30472.1| Polypeptide deformylase [Burkholderia glumae BGR1]
Length = 167
Score = 201 bits (511), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVAVVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S++ N+L+VFINP+I+W S KQIY EGCLS+PG++++++R +RV AL+++G+ F
Sbjct: 61 IDTSEDKNELRVFINPEIVWSSDGKQIYEEGCLSVPGVYDEVERPDHVRVRALDVQGQQF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLLGRVFVQYLSPLKQNRIKSKMKK 162
>gi|134297376|ref|YP_001121111.1| peptide deformylase [Burkholderia vietnamiensis G4]
gi|387903641|ref|YP_006333980.1| peptide deformylase [Burkholderia sp. KJ006]
gi|134140533|gb|ABO56276.1| peptide deformylase [Burkholderia vietnamiensis G4]
gi|387578533|gb|AFJ87249.1| Peptide deformylase [Burkholderia sp. KJ006]
Length = 167
Score = 201 bits (511), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 126/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L+ FINP+I+W S KQ+Y EGCLS+PGI+++++R +RV ALN G+ F
Sbjct: 61 IDVSEEKNELRAFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNERGEPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKK 162
>gi|386334944|ref|YP_006031115.1| peptide deformylase [Ralstonia solanacearum Po82]
gi|334197394|gb|AEG70579.1| peptide deformylase [Ralstonia solanacearum Po82]
Length = 169
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 127/156 (81%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A GIGLAA+QVD H++++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDAHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W S+E+++++EGCLS+P I++K++R R+RV ALN +G+ F
Sbjct: 61 IDVSESRDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 121 ELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRI 156
>gi|389871012|ref|YP_006378431.1| peptide deformylase [Advenella kashmirensis WT001]
gi|388536261|gb|AFK61449.1| peptide deformylase [Advenella kashmirensis WT001]
Length = 170
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL +A+P+ + D +++++ +M ETMY A G+GLAA+QV++H+++++
Sbjct: 1 MALLPILQFPDPRLHTVAKPVAQVDDRIRQLVRDMAETMYAAPGVGLAATQVNVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + L INP+IIW S +KQ+Y EGCLS+PG+++K++RS IRV ALN +G+ +
Sbjct: 61 IDVSEEGDDLLTLINPEIIWKSDDKQVYEEGCLSVPGVYDKVERSASIRVRALNEQGETY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E AEGLLA+C+QHE+DHL GK+F+EYLS K+ RI K K K+
Sbjct: 121 EFDAEGLLAVCVQHELDHLLGKVFVEYLSPLKQNRIKTKLKKQAKE 166
>gi|452126569|ref|ZP_21939152.1| peptide deformylase [Bordetella holmesii F627]
gi|452129945|ref|ZP_21942518.1| peptide deformylase [Bordetella holmesii H558]
gi|451921664|gb|EMD71809.1| peptide deformylase [Bordetella holmesii F627]
gi|451922805|gb|EMD72949.1| peptide deformylase [Bordetella holmesii H558]
Length = 170
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 126/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K+A+P+ D +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLPILRYPDPRLHKVAKPVAVVDDRVRQLVKDMAETMYDAPGVGLAATQVDVHERIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ L V INP+I W S+E Q+Y EGCLS+PG+++++KR+ RIR AL+ +G+ +
Sbjct: 61 IDVSEDGKDLCVLINPEITWKSEELQVYEEGCLSVPGVYDEVKRAARIRCKALDAQGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLLA+C+QHEIDHL+GK+F+EYLS K+ RI + K
Sbjct: 121 EFEADGLLAVCVQHEIDHLDGKVFVEYLSVLKQNRIKTRLKK 162
>gi|300705526|ref|YP_003747129.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
gi|299073190|emb|CBJ44548.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
Length = 169
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 128/156 (82%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A G+GLAA+Q+D+H++++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGVGLAATQIDVHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W S+E+++++EGCLS+P I++K++R R+RV ALN +G+ F
Sbjct: 61 IDVSESRDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 121 ELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRI 156
>gi|149925345|ref|ZP_01913609.1| peptide deformylase [Limnobacter sp. MED105]
gi|149825462|gb|EDM84670.1| peptide deformylase [Limnobacter sp. MED105]
Length = 169
Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 125/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RLK +A P+T+FD L K+ +M ETMY A G+GLAA+QV++HK++++
Sbjct: 1 MALLPILRYPDPRLKTVATPVTQFDDALVKLTQDMAETMYDAPGVGLAATQVNVHKRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++ + + L VFINP+II SKE ++Y EGCLS+PGI+ K++R ++V A N++G+ F
Sbjct: 61 IDVTDDKSGLTVFINPEIIDASKECKVYEEGCLSVPGIYEKVERPDTVKVRAQNVKGEWF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
EI + LLA+C+QHEIDHLNGK+F+EYLS K+ RI K K K
Sbjct: 121 EIDCDELLAVCIQHEIDHLNGKVFVEYLSQLKQTRIKTKMKKQDK 165
>gi|424901711|ref|ZP_18325227.1| peptide deformylase [Burkholderia thailandensis MSMB43]
gi|390932086|gb|EIP89486.1| peptide deformylase [Burkholderia thailandensis MSMB43]
Length = 165
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 128/160 (80%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILD 62
+L I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H++++++D
Sbjct: 1 MLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVID 60
Query: 63 ISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+S+ N+L+VFINP+++W S KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ FEI
Sbjct: 61 VSEEKNELRVFINPELVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGETFEI 120
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 121 DCEGLLAVCIQHEMDHLIGRVFVQYLSPLKQTRIKTKMKK 160
>gi|254295706|ref|ZP_04963163.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
gi|157805961|gb|EDO83131.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
Length = 165
Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 128/160 (80%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILD 62
+L I++YPD RL K+A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H++++++D
Sbjct: 1 MLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVID 60
Query: 63 ISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+S++ N+L+VFINP+I+W KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ FE+
Sbjct: 61 VSEDKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFEL 120
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 121 DCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKK 160
>gi|389721250|ref|ZP_10188004.1| peptide deformylase [Acinetobacter sp. HA]
gi|388609080|gb|EIM38274.1| peptide deformylase [Acinetobacter sp. HA]
Length = 176
Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAQPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q VFINPKI ++E Q Y EGCLS+P I++K++R R+++ A+N+EG+ F
Sbjct: 61 MDLSEDKDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVERPSRVKIQAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GLLA+C+QHE+DHLNGK+F++YLS K++R +K K ++
Sbjct: 121 EVEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKIEKAARQ 166
>gi|241664932|ref|YP_002983292.1| peptide deformylase [Ralstonia pickettii 12D]
gi|309780262|ref|ZP_07675013.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
gi|404394862|ref|ZP_10986665.1| peptide deformylase 1 [Ralstonia sp. 5_2_56FAA]
gi|240866959|gb|ACS64620.1| peptide deformylase [Ralstonia pickettii 12D]
gi|308920965|gb|EFP66611.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
gi|348613926|gb|EGY63495.1| peptide deformylase 1 [Ralstonia sp. 5_2_56FAA]
Length = 171
Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 127/163 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A G+GLAA+QVD+H++++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W S E ++++EGCLS+P I++K+ R R+RV ALN +G+ F
Sbjct: 61 IDVSESRDELRVFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+ LLA+C+QHE+DHL GK+F+EYLS K+ RI K K+
Sbjct: 121 ELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKH 163
>gi|330818688|ref|YP_004362393.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
gi|327371081|gb|AEA62437.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
Length = 167
Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILHYPDKRLHKVAKPVDVVDDRIRKLVDDMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S++ N LQVFINP+I+W S KQ+Y EGCLS+PG++++++R +RV AL +G+ F
Sbjct: 61 IDTSEDKNALQVFINPEIVWSSDGKQVYEEGCLSVPGVYDEVERPDHVRVRALGRDGQPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F++YLS K+ RI K K
Sbjct: 121 ELECEGLLAVCIQHEMDHLMGRVFVQYLSPLKQNRIKSKMKK 162
>gi|407009727|gb|EKE24809.1| hypothetical protein ACD_6C00031G0003 [uncultured bacterium]
Length = 176
Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAQPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q VFINPKI ++E Q Y EGCLS+P I++K+ R R+++ A+N+EG+ F
Sbjct: 61 MDLSENKDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GLLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 ELDADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRQ 166
>gi|262376937|ref|ZP_06070164.1| peptide deformylase [Acinetobacter lwoffii SH145]
gi|262308282|gb|EEY89418.1| peptide deformylase [Acinetobacter lwoffii SH145]
Length = 176
Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAQPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q VFINPKI ++E Q Y EGCLS+P I++K+ R R+++ A+N+EG+ F
Sbjct: 61 MDLSENKDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GLLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 ELDADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRQ 166
>gi|187930742|ref|YP_001901229.1| peptide deformylase [Ralstonia pickettii 12J]
gi|187727632|gb|ACD28797.1| peptide deformylase [Ralstonia pickettii 12J]
Length = 171
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 126/163 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A G+GLAA+QVD+H++++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W S E ++++EGCLS+P I++K+ R R+RV ALN +G F
Sbjct: 61 IDVSESRDELRVFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGDTF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+ LLA+C+QHE+DHL GK+F+EYLS K+ RI K K+
Sbjct: 121 ELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKH 163
>gi|337281354|ref|YP_004620826.1| peptide deformylase [Ramlibacter tataouinensis TTB310]
gi|334732431|gb|AEG94807.1| Candidate peptide deformylase (Polypeptide deformylase)
[Ramlibacter tataouinensis TTB310]
Length = 170
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL +A P+ D ++ ++ +M ETMY A GIGLAA+QVD+H++L++
Sbjct: 1 MALLPILVYPDPRLHTVARPVQAIDARIQTLVADMLETMYDANGIGLAATQVDVHERLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ V INP+I+W S +KQ+ +EGCLS+PGI++ ++RS IRV AL+ +G+
Sbjct: 61 IDVSEERNQPLVLINPEIVWASDDKQLGDEGCLSVPGIYDGVERSTAIRVRALDDKGQER 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 121 TLEAQGLLAVCIQHEMDHLQGKVFVEYLSPLKRNRIKTKMLK 162
>gi|186474806|ref|YP_001856276.1| peptide deformylase [Burkholderia phymatum STM815]
gi|184191265|gb|ACC69230.1| peptide deformylase [Burkholderia phymatum STM815]
Length = 167
Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ + D ++K++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLNILNYPDKRLHKVAKPVEKVDDRIRKLVADMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + +L+ FINP+I+W S E++I+ EGCLS+PGI++ ++R++++RV A+N +G+ F
Sbjct: 61 IDVSDTHEELRAFINPEILWSSDERKIHEEGCLSVPGIYDNVERAEKVRVRAMNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIKSKMKK 162
>gi|17544789|ref|NP_518191.1| peptide deformylase [Ralstonia solanacearum GMI1000]
gi|23396562|sp|Q8Y3B0.1|DEF1_RALSO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|17427078|emb|CAD13598.1| probable peptide deformylase 1 (pdf 1) (polypeptide deformylase1)
protein [Ralstonia solanacearum GMI1000]
Length = 169
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 126/156 (80%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A GIGLAA+QVD+H++++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W S+ +++++EGCLS+P I++K++R R+RV ALN +G+ F
Sbjct: 61 IDVSESRDELRVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ +GLLA+C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 121 ELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRI 156
>gi|169632177|ref|YP_001705913.1| peptide deformylase [Acinetobacter baumannii SDF]
gi|238688145|sp|B0VNL8.1|DEF_ACIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|169150969|emb|CAO99588.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii]
Length = 176
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 128/166 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINPK+ ++E Q Y EGCLS+P I++K+ R R+++ A+N+EG+ F
Sbjct: 61 MDLSESKDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA+C+QHE+DHLNGK+F++YLS K++R+ +K K +++
Sbjct: 121 EIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRVREKVEKIVRQ 166
>gi|299068355|emb|CBJ39579.1| peptide deformylase [Ralstonia solanacearum CMR15]
Length = 169
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 125/156 (80%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A GIGLAA+QVD+H++++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ ++L+VFINP+I+W S +++++EGCLS+P I++K++R R+RV ALN +G+ F
Sbjct: 61 IDISESRDELRVFINPEIVWASDARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ +GLLA+C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 121 ELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRI 156
>gi|390569584|ref|ZP_10249869.1| peptide deformylase [Burkholderia terrae BS001]
gi|389938444|gb|EIN00288.1| peptide deformylase [Burkholderia terrae BS001]
Length = 167
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ + + ++K++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLNILNYPDKRLHKVAKPVEKVNDRIRKLVADMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS +++L+ FINP+IIW S E++I+ EGCLS+PGI++ ++R++++RV ALN +G+ F
Sbjct: 61 IDISDAHDELRAFINPEIIWSSDERKIHEEGCLSVPGIYDNVERAEQVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIKSKMKK 162
>gi|333368768|ref|ZP_08460931.1| peptide deformylase [Psychrobacter sp. 1501(2011)]
gi|332976314|gb|EGK13171.1| peptide deformylase [Psychrobacter sp. 1501(2011)]
Length = 176
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 130/169 (76%), Gaps = 3/169 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL+ IAEP+ D ++K++I +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSYPDPRLRTIAEPVKTVDADIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+NN+ +VFINPKI ++K+ Y EGCLS+P +++ ++R ++++ AL+ +GK F
Sbjct: 61 MDLSENNDSPRVFINPKITPLVEDKKPYEEGCLSVPDVYDSVERPVKVKIEALDGDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI---IKKFLKNIKK 166
E IAEGLLA+C+QHE+DHLNG +F++YLS+ K+ R ++K+LK +K
Sbjct: 121 EEIAEGLLAVCIQHEMDHLNGVLFVDYLSSLKQTRARDKVRKYLKTREK 169
>gi|326319402|ref|YP_004237074.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323376238|gb|ADX48507.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 169
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 123/163 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K+A+P+ D ++ ++ +M ETMY A GIGLAA+QVD+H++++
Sbjct: 1 MALLPILCYPDPRLHKVAQPVQAVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + V INP+I+W S++KQ+ EGCLS+PGI++ ++RS +RV AL+ +G+
Sbjct: 61 IDVSEDRDTPLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSSAVRVQALDAQGQSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
I AEGLLAIC+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 121 VIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQ 163
>gi|169797633|ref|YP_001715426.1| peptide deformylase [Acinetobacter baumannii AYE]
gi|184156510|ref|YP_001844849.1| peptide deformylase [Acinetobacter baumannii ACICU]
gi|213155573|ref|YP_002317618.1| peptide deformylase [Acinetobacter baumannii AB0057]
gi|215484987|ref|YP_002327228.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
gi|239503032|ref|ZP_04662342.1| peptide deformylase [Acinetobacter baumannii AB900]
gi|260557576|ref|ZP_05829790.1| peptide deformylase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|301346868|ref|ZP_07227609.1| peptide deformylase [Acinetobacter baumannii AB056]
gi|301512296|ref|ZP_07237533.1| peptide deformylase [Acinetobacter baumannii AB058]
gi|301594510|ref|ZP_07239518.1| peptide deformylase [Acinetobacter baumannii AB059]
gi|332852665|ref|ZP_08434319.1| peptide deformylase [Acinetobacter baumannii 6013150]
gi|332869381|ref|ZP_08438759.1| peptide deformylase [Acinetobacter baumannii 6013113]
gi|332875644|ref|ZP_08443456.1| peptide deformylase [Acinetobacter baumannii 6014059]
gi|384130158|ref|YP_005512770.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2]
gi|384141439|ref|YP_005524149.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii MDR-ZJ06]
gi|385235738|ref|YP_005797077.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715]
gi|387125603|ref|YP_006291485.1| peptide deformylase [Acinetobacter baumannii MDR-TJ]
gi|403673529|ref|ZP_10935824.1| peptide deformylase [Acinetobacter sp. NCTC 10304]
gi|407931077|ref|YP_006846720.1| peptide deformylase [Acinetobacter baumannii TYTH-1]
gi|416146390|ref|ZP_11601094.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB210]
gi|417546097|ref|ZP_12197183.1| peptide deformylase [Acinetobacter baumannii OIFC032]
gi|417548197|ref|ZP_12199278.1| peptide deformylase [Acinetobacter baumannii Naval-18]
gi|417553466|ref|ZP_12204535.1| peptide deformylase [Acinetobacter baumannii Naval-81]
gi|417562528|ref|ZP_12213407.1| peptide deformylase [Acinetobacter baumannii OIFC137]
gi|417566767|ref|ZP_12217639.1| peptide deformylase [Acinetobacter baumannii OIFC143]
gi|417570941|ref|ZP_12221798.1| peptide deformylase [Acinetobacter baumannii OIFC189]
gi|417574855|ref|ZP_12225708.1| peptide deformylase [Acinetobacter baumannii Canada BC-5]
gi|417576185|ref|ZP_12227030.1| peptide deformylase [Acinetobacter baumannii Naval-17]
gi|417870153|ref|ZP_12515124.1| peptide deformylase [Acinetobacter baumannii ABNIH1]
gi|417875941|ref|ZP_12520737.1| peptide deformylase [Acinetobacter baumannii ABNIH2]
gi|417877304|ref|ZP_12522029.1| peptide deformylase [Acinetobacter baumannii ABNIH3]
gi|417883947|ref|ZP_12528156.1| peptide deformylase [Acinetobacter baumannii ABNIH4]
gi|421199564|ref|ZP_15656725.1| peptide deformylase [Acinetobacter baumannii OIFC109]
gi|421201880|ref|ZP_15659034.1| peptide deformylase [Acinetobacter baumannii AC12]
gi|421456710|ref|ZP_15906048.1| peptide deformylase [Acinetobacter baumannii IS-123]
gi|421534158|ref|ZP_15980434.1| peptide deformylase [Acinetobacter baumannii AC30]
gi|421622616|ref|ZP_16063517.1| peptide deformylase [Acinetobacter baumannii OIFC074]
gi|421624430|ref|ZP_16065302.1| peptide deformylase [Acinetobacter baumannii OIFC098]
gi|421631481|ref|ZP_16072150.1| peptide deformylase [Acinetobacter baumannii OIFC180]
gi|421633196|ref|ZP_16073834.1| peptide deformylase [Acinetobacter baumannii Naval-13]
gi|421642081|ref|ZP_16082608.1| peptide deformylase [Acinetobacter baumannii IS-235]
gi|421646589|ref|ZP_16087036.1| peptide deformylase [Acinetobacter baumannii IS-251]
gi|421650626|ref|ZP_16091000.1| peptide deformylase [Acinetobacter baumannii OIFC0162]
gi|421656910|ref|ZP_16097197.1| peptide deformylase [Acinetobacter baumannii Naval-72]
gi|421657875|ref|ZP_16098122.1| peptide deformylase [Acinetobacter baumannii Naval-83]
gi|421663347|ref|ZP_16103495.1| peptide deformylase [Acinetobacter baumannii OIFC110]
gi|421666529|ref|ZP_16106619.1| peptide deformylase [Acinetobacter baumannii OIFC087]
gi|421672013|ref|ZP_16111980.1| peptide deformylase [Acinetobacter baumannii OIFC099]
gi|421672896|ref|ZP_16112847.1| peptide deformylase [Acinetobacter baumannii OIFC065]
gi|421679002|ref|ZP_16118882.1| peptide deformylase [Acinetobacter baumannii OIFC111]
gi|421689043|ref|ZP_16128729.1| peptide deformylase [Acinetobacter baumannii IS-143]
gi|421690063|ref|ZP_16129735.1| peptide deformylase [Acinetobacter baumannii IS-116]
gi|421697313|ref|ZP_16136877.1| peptide deformylase [Acinetobacter baumannii WC-692]
gi|421700865|ref|ZP_16140377.1| peptide deformylase [Acinetobacter baumannii IS-58]
gi|421701788|ref|ZP_16141277.1| peptide deformylase [Acinetobacter baumannii ZWS1122]
gi|421705600|ref|ZP_16145026.1| peptide deformylase [Acinetobacter baumannii ZWS1219]
gi|421788378|ref|ZP_16224680.1| peptide deformylase [Acinetobacter baumannii Naval-82]
gi|421793879|ref|ZP_16229995.1| peptide deformylase [Acinetobacter baumannii Naval-2]
gi|421798466|ref|ZP_16234487.1| peptide deformylase [Acinetobacter baumannii Naval-21]
gi|421801872|ref|ZP_16237827.1| peptide deformylase [Acinetobacter baumannii Canada BC1]
gi|421805266|ref|ZP_16241155.1| peptide deformylase [Acinetobacter baumannii WC-A-694]
gi|421810049|ref|ZP_16245875.1| peptide deformylase [Acinetobacter baumannii OIFC035]
gi|424054069|ref|ZP_17791599.1| peptide deformylase [Acinetobacter baumannii Ab11111]
gi|424061496|ref|ZP_17798985.1| peptide deformylase [Acinetobacter baumannii Ab33333]
gi|424065177|ref|ZP_17802661.1| peptide deformylase [Acinetobacter baumannii Ab44444]
gi|425750585|ref|ZP_18868546.1| peptide deformylase [Acinetobacter baumannii WC-348]
gi|425753517|ref|ZP_18871400.1| peptide deformylase [Acinetobacter baumannii Naval-113]
gi|445398280|ref|ZP_21429572.1| peptide deformylase [Acinetobacter baumannii Naval-57]
gi|445444131|ref|ZP_21442852.1| peptide deformylase [Acinetobacter baumannii WC-A-92]
gi|445459468|ref|ZP_21447574.1| peptide deformylase [Acinetobacter baumannii OIFC047]
gi|445464604|ref|ZP_21449656.1| peptide deformylase [Acinetobacter baumannii OIFC338]
gi|445482999|ref|ZP_21456337.1| peptide deformylase [Acinetobacter baumannii Naval-78]
gi|445491578|ref|ZP_21459809.1| peptide deformylase [Acinetobacter baumannii AA-014]
gi|169150560|emb|CAM88469.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii AYE]
gi|183208104|gb|ACC55502.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
gi|193076056|gb|ABO10651.2| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
ATCC 17978]
gi|213054733|gb|ACJ39635.1| peptide deformylase [Acinetobacter baumannii AB0057]
gi|213986809|gb|ACJ57108.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
gi|260408749|gb|EEX02053.1| peptide deformylase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|322506378|gb|ADX01832.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2]
gi|323516246|gb|ADX90627.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715]
gi|332729133|gb|EGJ60480.1| peptide deformylase [Acinetobacter baumannii 6013150]
gi|332732799|gb|EGJ64015.1| peptide deformylase [Acinetobacter baumannii 6013113]
gi|332736217|gb|EGJ67232.1| peptide deformylase [Acinetobacter baumannii 6014059]
gi|333366104|gb|EGK48118.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB210]
gi|342224268|gb|EGT89311.1| peptide deformylase [Acinetobacter baumannii ABNIH2]
gi|342228546|gb|EGT93431.1| peptide deformylase [Acinetobacter baumannii ABNIH1]
gi|342234843|gb|EGT99476.1| peptide deformylase [Acinetobacter baumannii ABNIH4]
gi|342236116|gb|EGU00659.1| peptide deformylase [Acinetobacter baumannii ABNIH3]
gi|347591932|gb|AEP04653.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii MDR-ZJ06]
gi|385880095|gb|AFI97190.1| peptide deformylase [Acinetobacter baumannii MDR-TJ]
gi|395525110|gb|EJG13199.1| peptide deformylase [Acinetobacter baumannii OIFC137]
gi|395551389|gb|EJG17398.1| peptide deformylase [Acinetobacter baumannii OIFC189]
gi|395552439|gb|EJG18447.1| peptide deformylase [Acinetobacter baumannii OIFC143]
gi|395564561|gb|EJG26212.1| peptide deformylase [Acinetobacter baumannii OIFC109]
gi|395569406|gb|EJG30068.1| peptide deformylase [Acinetobacter baumannii Naval-17]
gi|398328488|gb|EJN44612.1| peptide deformylase [Acinetobacter baumannii AC12]
gi|400205588|gb|EJO36568.1| peptide deformylase [Acinetobacter baumannii Canada BC-5]
gi|400210414|gb|EJO41383.1| peptide deformylase [Acinetobacter baumannii IS-123]
gi|400383985|gb|EJP42663.1| peptide deformylase [Acinetobacter baumannii OIFC032]
gi|400388496|gb|EJP51568.1| peptide deformylase [Acinetobacter baumannii Naval-18]
gi|400389883|gb|EJP56930.1| peptide deformylase [Acinetobacter baumannii Naval-81]
gi|404558529|gb|EKA63811.1| peptide deformylase [Acinetobacter baumannii WC-692]
gi|404558935|gb|EKA64208.1| peptide deformylase [Acinetobacter baumannii IS-143]
gi|404565026|gb|EKA70200.1| peptide deformylase [Acinetobacter baumannii IS-116]
gi|404569150|gb|EKA74244.1| peptide deformylase [Acinetobacter baumannii IS-58]
gi|404666373|gb|EKB34320.1| peptide deformylase [Acinetobacter baumannii Ab33333]
gi|404666624|gb|EKB34555.1| peptide deformylase [Acinetobacter baumannii Ab11111]
gi|404672627|gb|EKB40442.1| peptide deformylase [Acinetobacter baumannii Ab44444]
gi|407195638|gb|EKE66767.1| peptide deformylase [Acinetobacter baumannii ZWS1219]
gi|407195941|gb|EKE67062.1| peptide deformylase [Acinetobacter baumannii ZWS1122]
gi|407899658|gb|AFU36489.1| peptide deformylase [Acinetobacter baumannii TYTH-1]
gi|408503025|gb|EKK04802.1| peptide deformylase [Acinetobacter baumannii Naval-72]
gi|408509873|gb|EKK11540.1| peptide deformylase [Acinetobacter baumannii OIFC0162]
gi|408513813|gb|EKK15426.1| peptide deformylase [Acinetobacter baumannii IS-235]
gi|408517412|gb|EKK18955.1| peptide deformylase [Acinetobacter baumannii IS-251]
gi|408692753|gb|EKL38367.1| peptide deformylase [Acinetobacter baumannii OIFC180]
gi|408694968|gb|EKL40528.1| peptide deformylase [Acinetobacter baumannii OIFC074]
gi|408701606|gb|EKL47031.1| peptide deformylase [Acinetobacter baumannii OIFC098]
gi|408706871|gb|EKL52168.1| peptide deformylase [Acinetobacter baumannii Naval-13]
gi|408711476|gb|EKL56683.1| peptide deformylase [Acinetobacter baumannii Naval-83]
gi|408713452|gb|EKL58619.1| peptide deformylase [Acinetobacter baumannii OIFC110]
gi|409987782|gb|EKO43959.1| peptide deformylase [Acinetobacter baumannii AC30]
gi|410380947|gb|EKP33523.1| peptide deformylase [Acinetobacter baumannii OIFC099]
gi|410387563|gb|EKP40008.1| peptide deformylase [Acinetobacter baumannii OIFC087]
gi|410387821|gb|EKP40262.1| peptide deformylase [Acinetobacter baumannii OIFC065]
gi|410391693|gb|EKP44059.1| peptide deformylase [Acinetobacter baumannii OIFC111]
gi|410394058|gb|EKP46397.1| peptide deformylase [Acinetobacter baumannii Naval-21]
gi|410396120|gb|EKP48404.1| peptide deformylase [Acinetobacter baumannii Naval-2]
gi|410403219|gb|EKP55317.1| peptide deformylase [Acinetobacter baumannii Naval-82]
gi|410404686|gb|EKP56748.1| peptide deformylase [Acinetobacter baumannii Canada BC1]
gi|410409079|gb|EKP61013.1| peptide deformylase [Acinetobacter baumannii WC-A-694]
gi|410413394|gb|EKP65221.1| peptide deformylase [Acinetobacter baumannii OIFC035]
gi|425485763|gb|EKU52144.1| peptide deformylase [Acinetobacter baumannii WC-348]
gi|425497840|gb|EKU63930.1| peptide deformylase [Acinetobacter baumannii Naval-113]
gi|444762080|gb|ELW86452.1| peptide deformylase [Acinetobacter baumannii WC-A-92]
gi|444764116|gb|ELW88439.1| peptide deformylase [Acinetobacter baumannii AA-014]
gi|444768939|gb|ELW93139.1| peptide deformylase [Acinetobacter baumannii Naval-78]
gi|444773911|gb|ELW98001.1| peptide deformylase [Acinetobacter baumannii OIFC047]
gi|444779492|gb|ELX03475.1| peptide deformylase [Acinetobacter baumannii OIFC338]
gi|444783785|gb|ELX07623.1| peptide deformylase [Acinetobacter baumannii Naval-57]
gi|452949984|gb|EME55449.1| peptide deformylase [Acinetobacter baumannii MSP4-16]
Length = 176
Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINPK+ ++E Q Y EGCLS+P I++K+ R R+++ A+N+EG+ F
Sbjct: 61 MDLSESKDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 EIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKIVRQ 166
>gi|348617591|ref|ZP_08884128.1| Peptide deformylase (PDF) [Candidatus Glomeribacter gigasporarum
BEG34]
gi|347817068|emb|CCD28735.1| Peptide deformylase (PDF) [Candidatus Glomeribacter gigasporarum
BEG34]
Length = 167
Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ E D ++++I +M ETMY A GIGLAA+QV++H+++++
Sbjct: 1 MALLNILCYPDPRLHTVAQPVAEVDARIRQLIRDMAETMYAAPGIGLAATQVNVHQRVMV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S +QLQ FINP++ S + + EGCLS+PGI++ ++RS+RIR+ ALN EGK
Sbjct: 61 IDVSDTRDQLQAFINPELTETSAQTKPGEEGCLSVPGIYDTVERSERIRLRALNEEGKAV 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI A GLLA+C+QHE+DHLNGK+F++YLS K+ RI K K
Sbjct: 121 EIDANGLLAVCIQHEVDHLNGKVFVDYLSALKRMRIKTKMKK 162
>gi|323524423|ref|YP_004226576.1| peptide deformylase [Burkholderia sp. CCGE1001]
gi|407711813|ref|YP_006832378.1| peptide deformylase [Burkholderia phenoliruptrix BR3459a]
gi|323381425|gb|ADX53516.1| peptide deformylase [Burkholderia sp. CCGE1001]
gi|407233997|gb|AFT84196.1| peptide deformylase [Burkholderia phenoliruptrix BR3459a]
Length = 167
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 127/162 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ E + +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S ++QL FINP+IIW S EK++ EGCLS+PGI++ ++R++++RV ALN +G+ F
Sbjct: 61 IDVSDAHDQLLAFINPEIIWSSDEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKK 162
>gi|255319595|ref|ZP_05360807.1| peptide deformylase [Acinetobacter radioresistens SK82]
gi|262380781|ref|ZP_06073934.1| peptide deformylase [Acinetobacter radioresistens SH164]
gi|421464567|ref|ZP_15913257.1| peptide deformylase [Acinetobacter radioresistens WC-A-157]
gi|421857579|ref|ZP_16289911.1| peptide deformylase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|255303350|gb|EET82555.1| peptide deformylase [Acinetobacter radioresistens SK82]
gi|262297729|gb|EEY85645.1| peptide deformylase [Acinetobacter radioresistens SH164]
gi|400205320|gb|EJO36301.1| peptide deformylase [Acinetobacter radioresistens WC-A-157]
gi|403187002|dbj|GAB76112.1| peptide deformylase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 176
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 125/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ +A+P+ E ++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTLAKPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ VFINPKI +++ Q Y EGCLS+P I++K++R R+++ ALN+EG F
Sbjct: 61 MDLSEEKNQPMVFINPKITPLTEDTQPYEEGCLSVPQIYDKVERPSRVKIEALNLEGNAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
EI A+GLLA+C+QHE+DHLNGK+F++YLS K++R +K K ++
Sbjct: 121 EIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVR 165
>gi|425744414|ref|ZP_18862471.1| peptide deformylase [Acinetobacter baumannii WC-323]
gi|425490927|gb|EKU57218.1| peptide deformylase [Acinetobacter baumannii WC-323]
Length = 176
Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDHHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ NQ VFINPK+I ++E Q Y EGCLS+P I++K++R R+++ A+N+EG+ F
Sbjct: 61 MDISEEKNQPMVFINPKVIPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 ELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|385207345|ref|ZP_10034213.1| peptide deformylase [Burkholderia sp. Ch1-1]
gi|385179683|gb|EIF28959.1| peptide deformylase [Burkholderia sp. Ch1-1]
Length = 167
Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL II YPD RL KIA+P+ + +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S ++N+L FINP+IIW S E+++ EGCLS+PGI++ ++R++++RV ALN +G+ F
Sbjct: 61 IDVSDDHNELLAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS+ K+ RI K K
Sbjct: 121 EMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKK 162
>gi|299771931|ref|YP_003733957.1| peptide deformylase [Acinetobacter oleivorans DR1]
gi|424741089|ref|ZP_18169450.1| peptide deformylase [Acinetobacter baumannii WC-141]
gi|298702019|gb|ADI92584.1| peptide deformylase [Acinetobacter oleivorans DR1]
gi|422945022|gb|EKU39993.1| peptide deformylase [Acinetobacter baumannii WC-141]
Length = 176
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 128/166 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ VFINPKI +++KQ Y EGCLS+P I++K++R R+++ A+N+EG+ F
Sbjct: 61 IDLSEAKDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 EIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|293611136|ref|ZP_06693434.1| peptide deformylase [Acinetobacter sp. SH024]
gi|375136707|ref|YP_004997357.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2]
gi|427422650|ref|ZP_18912825.1| peptide deformylase [Acinetobacter baumannii WC-136]
gi|292826387|gb|EFF84754.1| peptide deformylase [Acinetobacter sp. SH024]
gi|325124152|gb|ADY83675.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2]
gi|425700560|gb|EKU70142.1| peptide deformylase [Acinetobacter baumannii WC-136]
Length = 176
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 128/166 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + VFINPKI +++KQ Y EGCLS+P I++K++R R+++ A+N+EG+ F
Sbjct: 61 IDLSESKDDPMVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GLLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 ELEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|307728142|ref|YP_003905366.1| peptide deformylase [Burkholderia sp. CCGE1003]
gi|307582677|gb|ADN56075.1| peptide deformylase [Burkholderia sp. CCGE1003]
Length = 167
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 127/162 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ E + +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S ++QL FINP+I+W S EK++ EGCLS+PGI++ ++R++++RV ALN +G+ F
Sbjct: 61 IDVSDAHDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 EMDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKK 162
>gi|91781430|ref|YP_556636.1| peptide deformylase [Burkholderia xenovorans LB400]
gi|91685384|gb|ABE28584.1| peptide deformylase [Burkholderia xenovorans LB400]
Length = 167
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL II YPD RL KIA+P+ + +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S ++N+L FINP+IIW S E+++ EGCLS+PGI++ ++R++++RV ALN +G+ F
Sbjct: 61 IDVSDDHNELLTFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS+ K+ RI K K
Sbjct: 121 EMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKK 162
>gi|120613319|ref|YP_972997.1| peptide deformylase [Acidovorax citrulli AAC00-1]
gi|120591783|gb|ABM35223.1| peptide deformylase [Acidovorax citrulli AAC00-1]
Length = 169
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 123/163 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K+A+P+ D ++ ++ +M ETMY A GIGLAA+QVD+H++++
Sbjct: 1 MALLPILCYPDPRLHKVAQPVQVVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + V INP+I+W S++KQ+ EGCLS+PGI++ ++RS +RV AL+ +G+
Sbjct: 61 IDVSEDRDTPLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSTAVRVQALDAQGQSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
I AEGLLAIC+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 121 VIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQ 163
>gi|359427639|ref|ZP_09218687.1| peptide deformylase [Acinetobacter sp. NBRC 100985]
gi|358237056|dbj|GAB00226.1| peptide deformylase [Acinetobacter sp. NBRC 100985]
Length = 176
Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E +++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDSRLRTIAKPVEEVTDDIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ VFINPK+ ++E Q Y EGCLS+P I++K++R R+++ A+N+EG+ F
Sbjct: 61 MDLSEEKNQPMVFINPKVTPLTQETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 ELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|312797602|ref|YP_004030524.1| peptide deformylase [Burkholderia rhizoxinica HKI 454]
gi|312169377|emb|CBW76380.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI
454]
Length = 169
Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 125/163 (76%), Gaps = 3/163 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A+P+ D ++K++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 3 MALLNILHYPDKRLHKVAKPVERVDERIRKLVADMAETMYAASGVGLAATQVDVHERVVV 62
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + L+VFINP+I+W S E+ I EGCLS+P I + ++R++R+RV ALN G+ F
Sbjct: 63 IDVSDTRDALRVFINPEIVWSSDERDINEEGCLSVPRICDSVERAERVRVRALNENGESF 122
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI---IKKF 160
E+ EGLLAIC+QHE+DHL GK+F+EYLS K+ RI +KKF
Sbjct: 123 ELECEGLLAICIQHEMDHLLGKVFVEYLSPLKQMRIKTTMKKF 165
>gi|420247911|ref|ZP_14751293.1| peptide deformylase [Burkholderia sp. BT03]
gi|398069799|gb|EJL61131.1| peptide deformylase [Burkholderia sp. BT03]
Length = 167
Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 129/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ + + ++K++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLNILNYPDKRLHKVAKPVEKVNDLIRKLVADMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS +++L+ FINP+IIW S E++I+ EGCLS+PGI++ ++R++++RV ALN +G+ F
Sbjct: 61 IDISDAHDELRAFINPEIIWSSDERKIHEEGCLSVPGIYDNVERAEQVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIKSKMKK 162
>gi|402757023|ref|ZP_10859279.1| peptide deformylase [Acinetobacter sp. NCTC 7422]
Length = 176
Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 128/166 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E +++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDDIRQLAADMFETMYEAPGIGLAATQVDHHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ NQ VFINPK+I +++ Q Y EGCLS+P I++K++R R+++ A+N+EG+ F
Sbjct: 61 MDISEEKNQPMVFINPKVIPLTEDTQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 ELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|262281295|ref|ZP_06059076.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
gi|262257121|gb|EEY75858.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
Length = 176
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 128/166 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDHHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ VFINPKI +++KQ Y EGCLS+P I++K++R R+++ A+N+EG+ F
Sbjct: 61 IDLSEAKDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 EIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|194291227|ref|YP_002007134.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
gi|193225062|emb|CAQ71073.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
Length = 168
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL +A+P+ D +++++ +M ETMY A GIGLAA+QV++H+Q+++
Sbjct: 1 MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +QLQVFINP+I+W S ++++ EGCLS+P ++++++R R+RV ALN +G+ F
Sbjct: 61 IDVSETRDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLA+C+QHEIDHL GK+F+EYLS K RI K K
Sbjct: 121 ELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQK 162
>gi|113869635|ref|YP_728124.1| peptide deformylase [Ralstonia eutropha H16]
gi|113528411|emb|CAJ94756.1| formylmethionine deformylase [Ralstonia eutropha H16]
Length = 168
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL +A+P+ D +++++ +M ETMY A GIGLAA+QV++H+Q+++
Sbjct: 1 MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +QLQVFINP+I+W S ++++ EGCLS+P ++++++R R+RV ALN +G+ F
Sbjct: 61 IDVSETRDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLA+C+QHEIDHL GK+F+EYLS K RI K K
Sbjct: 121 ELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQK 162
>gi|226952176|ref|ZP_03822640.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
deformylase) [Acinetobacter sp. ATCC 27244]
gi|294648885|ref|ZP_06726341.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
gi|226837014|gb|EEH69397.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
deformylase) [Acinetobacter sp. ATCC 27244]
gi|292825276|gb|EFF84023.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
Length = 176
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 126/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ VFINPK+ ++E Q Y EGCLS+P I++K++R R+++ A+N+EG+ F
Sbjct: 61 MDLSEEKNQPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 ELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|416232552|ref|ZP_11628996.1| peptide deformylase [Moraxella catarrhalis 12P80B1]
gi|416248197|ref|ZP_11636116.1| peptide deformylase [Moraxella catarrhalis BC8]
gi|416256625|ref|ZP_11639801.1| peptide deformylase [Moraxella catarrhalis O35E]
gi|421780844|ref|ZP_16217331.1| peptide deformylase [Moraxella catarrhalis RH4]
gi|326567834|gb|EGE17938.1| peptide deformylase [Moraxella catarrhalis 12P80B1]
gi|326568164|gb|EGE18246.1| peptide deformylase [Moraxella catarrhalis BC8]
gi|326573749|gb|EGE23707.1| peptide deformylase [Moraxella catarrhalis O35E]
gi|407812140|gb|EKF82927.1| peptide deformylase [Moraxella catarrhalis RH4]
Length = 184
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 122/167 (73%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL+ +A+P+T FD LK++I +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+++ + QVFINPK+ E Y EGCLS+P +F+ I+R R+R+ AL+ +G+
Sbjct: 61 MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
FEI AEGLLA+C+QHE+DHLNGK+F++YLS K+ R K K +K
Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALK 167
>gi|296114064|ref|YP_003628002.1| peptide deformylase [Moraxella catarrhalis RH4]
gi|416156774|ref|ZP_11604688.1| peptide deformylase [Moraxella catarrhalis 101P30B1]
gi|416218714|ref|ZP_11625031.1| peptide deformylase [Moraxella catarrhalis 7169]
gi|416221639|ref|ZP_11625857.1| peptide deformylase [Moraxella catarrhalis 103P14B1]
gi|416230411|ref|ZP_11628410.1| peptide deformylase [Moraxella catarrhalis 46P47B1]
gi|416240362|ref|ZP_11632373.1| peptide deformylase [Moraxella catarrhalis BC1]
gi|416241442|ref|ZP_11632769.1| peptide deformylase [Moraxella catarrhalis BC7]
gi|416251546|ref|ZP_11637755.1| peptide deformylase [Moraxella catarrhalis CO72]
gi|295921758|gb|ADG62109.1| peptide deformylase [Moraxella catarrhalis BBH18]
gi|326559449|gb|EGE09872.1| peptide deformylase [Moraxella catarrhalis 7169]
gi|326561289|gb|EGE11648.1| peptide deformylase [Moraxella catarrhalis 46P47B1]
gi|326565177|gb|EGE15368.1| peptide deformylase [Moraxella catarrhalis 103P14B1]
gi|326566131|gb|EGE16288.1| peptide deformylase [Moraxella catarrhalis BC1]
gi|326572198|gb|EGE22194.1| peptide deformylase [Moraxella catarrhalis BC7]
gi|326572807|gb|EGE22792.1| peptide deformylase [Moraxella catarrhalis CO72]
gi|326574626|gb|EGE24562.1| peptide deformylase [Moraxella catarrhalis 101P30B1]
Length = 184
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 122/167 (73%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL+ +A+P+T FD LK++I +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+++ + QVFINPK+ E Y EGCLS+P +F+ I+R R+R+ AL+ +G+
Sbjct: 61 MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
FEI AEGLLA+C+QHE+DHLNGK+F++YLS K+ R K K +K
Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALK 167
>gi|209515834|ref|ZP_03264696.1| peptide deformylase [Burkholderia sp. H160]
gi|209503682|gb|EEA03676.1| peptide deformylase [Burkholderia sp. H160]
Length = 167
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 127/162 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+TE + +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLNILNYPDKRLHKVAKPVTEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +++L INP+I+W S E++ EGCLS+PGI++ ++R++++RV ALN +G+ F
Sbjct: 61 IDVSETHDELLALINPEIVWSSDERKFSEEGCLSVPGIYDNVERAEKVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKSKMKK 162
>gi|241766760|ref|ZP_04764590.1| peptide deformylase [Acidovorax delafieldii 2AN]
gi|241362866|gb|EER58605.1| peptide deformylase [Acidovorax delafieldii 2AN]
Length = 169
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 121/163 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL K+A+P+ D ++ ++ +M TMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAILPILCYPDPRLHKVAQPVQAVDARIEALVADMLATMYDAHGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ V INP+I+W S E+ + +EGCLS+PGI++ ++R+ + V AL+ +GK
Sbjct: 61 IDVSEERNEPLVLINPEIVWASAERHVGDEGCLSVPGIYDGVERAAAVHVRALDAQGKSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
I AEGLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 121 TIEAEGLLAVCMQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQ 163
>gi|170694015|ref|ZP_02885171.1| peptide deformylase [Burkholderia graminis C4D1M]
gi|170141087|gb|EDT09259.1| peptide deformylase [Burkholderia graminis C4D1M]
Length = 167
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 126/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ E + +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S ++QL FINP+I+W S EK++ EGCLS+PGI++ ++R++++RV ALN +G+ F
Sbjct: 61 IDVSDAHDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G +F+EYLS K+ RI K K
Sbjct: 121 EMDCEGLLAVCIQHEMDHLMGHVFVEYLSPLKQTRIKSKMKK 162
>gi|262374668|ref|ZP_06067941.1| peptide deformylase [Acinetobacter junii SH205]
gi|262310458|gb|EEY91549.1| peptide deformylase [Acinetobacter junii SH205]
Length = 176
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E +++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDDIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ VFINPK+ ++E Q Y EGCLS+P I++K++R R+++ A+N++G+ F
Sbjct: 61 MDLSEEKNQPMVFINPKVTPLTQETQPYEEGCLSVPQIYDKVERPSRVKIEAINLDGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 ELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|377819464|ref|YP_004975835.1| peptide deformylase [Burkholderia sp. YI23]
gi|357934299|gb|AET87858.1| peptide deformylase [Burkholderia sp. YI23]
Length = 167
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLKILNYPDKRLNKVAKPVAVVDDRIRKLVADMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S ++QL VFINP+I+W S +K+ + EGCLS+PGI++ ++R ++RV ALN +G+ F
Sbjct: 61 IDVSDAHDQLMVFINPEIVWSSDQKKEWEEGCLSVPGIYDFVERPDKVRVKALNQKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G +F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLAGHVFVEYLSQLKQTRIRGKMKK 162
>gi|406040355|ref|ZP_11047710.1| peptide deformylase [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 174
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q VFINPK+ ++E Q Y EGCLS+P I++K++R R+++ A+N++G+ F
Sbjct: 61 MDLSENKDQPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLDGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 ELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|339327730|ref|YP_004687423.1| peptide deformylase 1 [Cupriavidus necator N-1]
gi|338167887|gb|AEI78942.1| peptide deformylase 1 [Cupriavidus necator N-1]
Length = 168
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL +A+P+ D +++++ +M ETMY A GIGLAA+QV++H+Q+++
Sbjct: 1 MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +QLQVFINP+IIW S ++++ EGCLS+P ++++++R R+RV ALN +G+ F
Sbjct: 61 IDVSETRDQLQVFINPEIIWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLA+C+QHEIDHL GK+F+EYLS K RI + K
Sbjct: 121 ELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSRLQK 162
>gi|187922316|ref|YP_001893958.1| peptide deformylase [Burkholderia phytofirmans PsJN]
gi|187713510|gb|ACD14734.1| peptide deformylase [Burkholderia phytofirmans PsJN]
Length = 167
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 127/162 (78%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL KIA+P+ + +++++ +M ETMY A G+GLAA+QVD+H++++
Sbjct: 1 MALLNILNYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S ++N+L FINP+IIW S E+++ EGCLS+PGI++ ++R++++RV ALN +G+ F
Sbjct: 61 IDVSDDHNELLAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS+ K+ RI K K
Sbjct: 121 EMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKK 162
>gi|424778155|ref|ZP_18205106.1| peptide deformylase [Alcaligenes sp. HPC1271]
gi|422886983|gb|EKU29394.1| peptide deformylase [Alcaligenes sp. HPC1271]
Length = 172
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL +A+P+ E D ++K++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLPILKFPDPRLHTVAKPVQEVDDRIRKLVKDMAETMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L V INP+I W S+E ++Y EGCLS+P ++K++R+ IR A N +G+ +
Sbjct: 61 IDVSESGNELLVLINPEITWKSEELKVYEEGCLSVPDTYDKVERAANIRFKAQNEKGEWY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A+GLLA+C+QHE+DHL+GK+F+EYLS K+ERI + K ++
Sbjct: 121 EKEADGLLAVCVQHELDHLDGKVFVEYLSVLKRERIRSRLRKQQRE 166
>gi|262371336|ref|ZP_06064654.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
gi|381198512|ref|ZP_09905850.1| peptide deformylase [Acinetobacter lwoffii WJ10621]
gi|262313673|gb|EEY94722.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
Length = 177
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IAEP+ E ++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAEPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q VFINPK+ ++E Q Y EGCLS+P I++K++R R+++ A+N+EG+ F
Sbjct: 61 MDLSEHKDQPLVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI A+ LLA+C+QHE+DHLNGK+F++YLS K++R +K K
Sbjct: 121 EIEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEK 162
>gi|260554281|ref|ZP_05826531.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
gi|424057319|ref|ZP_17794836.1| peptide deformylase [Acinetobacter nosocomialis Ab22222]
gi|425739180|ref|ZP_18857390.1| peptide deformylase [Acinetobacter baumannii WC-487]
gi|445439125|ref|ZP_21441542.1| peptide deformylase [Acinetobacter baumannii OIFC021]
gi|260404590|gb|EEW98110.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
gi|407440852|gb|EKF47369.1| peptide deformylase [Acinetobacter nosocomialis Ab22222]
gi|425497074|gb|EKU63187.1| peptide deformylase [Acinetobacter baumannii WC-487]
gi|444752434|gb|ELW77119.1| peptide deformylase [Acinetobacter baumannii OIFC021]
Length = 176
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 126/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINPKI ++E Q Y EGCLS+P I++K+ R R+++ A+N+EG+ F
Sbjct: 61 MDLSESKDEPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA+C+QHE+DHL GK+F++YLS K++R +K K +++
Sbjct: 121 EIEADGLLAVCIQHEMDHLKGKLFVDYLSPLKRQRAREKVEKIVRQ 166
>gi|148651859|ref|YP_001278952.1| peptide deformylase [Psychrobacter sp. PRwf-1]
gi|172048436|sp|A5WBG1.1|DEF_PSYWF RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|148570943|gb|ABQ93002.1| peptide deformylase [Psychrobacter sp. PRwf-1]
Length = 176
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 126/169 (74%), Gaps = 3/169 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL+ IAEPI D +K++I +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MAILPILSYPDPRLRTIAEPIKTVDAEIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+NN+ +VFINPK+ ++K+ Y EGCLS+P +++ + R ++++ AL+ +G F
Sbjct: 61 MDLSENNDSPRVFINPKVTPLVEDKKPYEEGCLSVPDVYDSVDRPVKVKIEALDADGNAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI---IKKFLKNIKK 166
E IAEGLLA+C+QHE+DHLNG +F++YLS K+ R +KK+LK +K
Sbjct: 121 EEIAEGLLAVCIQHEMDHLNGVLFVDYLSRLKQTRARDKVKKYLKTREK 169
>gi|406036448|ref|ZP_11043812.1| peptide deformylase [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 176
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 126/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E +++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDDIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ VFINPK+ ++E Q Y EGCLS+P I++K+ R R+++ A+N++G+ F
Sbjct: 61 MDLSEEKNQPMVFINPKVTPLTQETQPYEEGCLSVPQIYDKVARPSRVKIEAINLDGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 ELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|295675125|ref|YP_003603649.1| peptide deformylase [Burkholderia sp. CCGE1002]
gi|295434968|gb|ADG14138.1| peptide deformylase [Burkholderia sp. CCGE1002]
Length = 167
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 128/162 (79%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ E + +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +++L FINP+I+W S ++++ EGCLS+PGI++ ++R++++RV ALN +G+ F
Sbjct: 61 IDVSETHDELLAFINPEIVWSSDQRKLSEEGCLSVPGIYDNVERAEKVRVRALNQKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL G++F+EYLS K+ RI K K
Sbjct: 121 ELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKK 162
>gi|430804750|ref|ZP_19431865.1| peptide deformylase [Cupriavidus sp. HMR-1]
gi|429503070|gb|ELA01372.1| peptide deformylase [Cupriavidus sp. HMR-1]
Length = 168
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 128/165 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL K+A+P+ D +++++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAKLDILTYPDPRLHKVAKPVEVVDDRIRQLVKDMAETMYEAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ ++L VFINP++ W S+ ++++ EGCLS+P ++++++R R++V AL+ +G+ F
Sbjct: 61 IDISESRDELMVFINPEVTWASENRKVWEEGCLSVPEVYDRVERPDRVKVRALDEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLA+C+QHEIDHL+GK+F+EYLS K +RI K K ++
Sbjct: 121 ELDADDLLAVCIQHEIDHLDGKVFVEYLSPLKLQRIKSKLQKRVR 165
>gi|217968557|ref|YP_002353791.1| peptide deformylase [Thauera sp. MZ1T]
gi|217505884|gb|ACK52895.1| peptide deformylase [Thauera sp. MZ1T]
Length = 167
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL +A P+ D ++++I +M ETMY A GIGLAA+QVD+HK++++
Sbjct: 1 MALLPILRYPDPRLHTVAAPVGRVDDEIRRLIADMAETMYEAPGIGLAATQVDVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + L INP+I+ S E Q+ EGCLS+PGI+ K+ R++R++V ALN +G+ F
Sbjct: 61 IDVSEDKSGLMALINPEILERSGE-QVCEEGCLSVPGIYEKVSRAERVKVRALNEKGESF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E A+GLLA+C+QHEIDHL+GK+F+EYLS K RI K K +
Sbjct: 120 EFEADGLLAVCVQHEIDHLDGKVFVEYLSQLKLGRIKSKLAKKAR 164
>gi|94312496|ref|YP_585706.1| peptide deformylase [Cupriavidus metallidurans CH34]
gi|93356348|gb|ABF10437.1| formylmethionine deformylase [Cupriavidus metallidurans CH34]
Length = 168
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 128/165 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL K+A+P+ D +++++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAKLDILTYPDPRLHKVAKPVEVVDDRIRQLVKDMAETMYEAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ ++L VFINP++ W S+ ++++ EGCLS+P ++++++R R++V AL+ +G+ F
Sbjct: 61 IDISESRDELMVFINPEVTWASENRKVWEEGCLSVPEVYDRVERPDRVKVRALDEKGEAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLA+C+QHEIDHL+GK+F+EYLS K +RI K K ++
Sbjct: 121 ELDADDLLAVCIQHEIDHLDGKVFVEYLSPLKLQRIKSKLQKRVR 165
>gi|73543090|ref|YP_297610.1| peptide deformylase [Ralstonia eutropha JMP134]
gi|72120503|gb|AAZ62766.1| peptide deformylase [Ralstonia eutropha JMP134]
Length = 168
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL +A+P+ E D +++++ +M ETMY A GIGLAA+QV++H+Q+++
Sbjct: 1 MAKLDILTYPDPRLHTVAKPVKEVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + LQVFINP+I+W S ++++ EGCLS+P ++++++R R+RV ALN +G+ F
Sbjct: 61 IDVSETRDALQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLA+C+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 121 ELDADDLLAVCIQHEMDHLLGKVFVEYLSPLKQNRIKSKLHK 162
>gi|121596335|ref|YP_988231.1| peptide deformylase [Acidovorax sp. JS42]
gi|222112559|ref|YP_002554823.1| peptide deformylase [Acidovorax ebreus TPSY]
gi|120608415|gb|ABM44155.1| peptide deformylase [Acidovorax sp. JS42]
gi|221732003|gb|ACM34823.1| peptide deformylase [Acidovorax ebreus TPSY]
Length = 170
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 123/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL K+A+P+T D ++ I+ +M TMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAILPILCYPDPRLHKVAQPVTAVDERVRAIVDDMFATMYDAHGIGLAATQVDVHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + V INP+I W S EKQ+ +EGCLS+PGI++ ++RS + V AL+ +G+
Sbjct: 61 IDVSEERDTPLVLINPEITWASAEKQVGDEGCLSVPGIYDGVERSTAVHVRALDRDGQPR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
I AEGLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK K+
Sbjct: 121 VIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQ 166
>gi|395009982|ref|ZP_10393405.1| peptide deformylase [Acidovorax sp. CF316]
gi|394311939|gb|EJE49219.1| peptide deformylase [Acidovorax sp. CF316]
Length = 168
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 121/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL K+A P+ D LK ++ +M TMY A GIGLAA+QVD+H++L++
Sbjct: 1 MAILPILCYPDPRLHKVARPVEAVDARLKTLVSDMLATMYDANGIGLAATQVDVHERLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ V INP+I+W S EK + +EGCLS+PGI++ ++R + V AL+ EG+
Sbjct: 61 IDVSEGRNEPMVLINPEIVWASAEKHVNDEGCLSVPGIYDGVERHDAVHVKALDAEGQSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ AEGLLA+C+QHE+DHL GK+F+EYLS K+ RI K +K ++
Sbjct: 121 TVEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKMVKQQRE 166
>gi|421750133|ref|ZP_16187425.1| peptide deformylase [Cupriavidus necator HPC(L)]
gi|409770869|gb|EKN53367.1| peptide deformylase [Cupriavidus necator HPC(L)]
Length = 168
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 124/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL +A+P+ + D +++++ +M ETMY A GIGLAA+QVD+H+Q+++
Sbjct: 1 MAKLDILTYPDPRLHIVAKPVAQVDDRIRQLVKDMAETMYEAPGIGLAATQVDVHEQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++L+VFINP+I+W S ++++ EGCLS+P ++++++R R+RV ALN G+ F
Sbjct: 61 IDISETRDELRVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNENGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLA+C+QHE+DHL GK+F+EYLS K RI K K +
Sbjct: 121 ELEADDLLAVCIQHEMDHLKGKVFVEYLSPLKLNRIKSKLQKRAR 165
>gi|319945035|ref|ZP_08019297.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
gi|319741605|gb|EFV94030.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
Length = 170
Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL +AE + D ++K++ +M ETMY A GIGLAA+QV++H+++++
Sbjct: 1 MAVLDILKYPDARLHTVAERVPVVDDRIRKLVADMAETMYAAPGIGLAATQVNVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI++ ++QLQVFINP+I W S Q Y EGCLS+PGI++K++R + V AL ++GK F
Sbjct: 61 IDITETHDQLQVFINPEITWSSDTLQSYEEGCLSIPGIYDKVERPDAVTVTALGLDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLA+C+QHEIDHLNGK+F ++LS K+ RI +K LK
Sbjct: 121 TLEADGLLAVCIQHEIDHLNGKLFTQHLSRLKQNRIRQKVLK 162
>gi|393760454|ref|ZP_10349264.1| peptide deformylase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393161311|gb|EJC61375.1| peptide deformylase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 172
Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 126/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL +A+P+ E D ++K++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLPILKFPDPRLHTVAKPVQEVDDRIRKLVKDMAETMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+L V INP+I W S+E ++Y EGCLS+P ++K++R+ IR A + G+ +
Sbjct: 61 IDVSESGNELLVLINPEITWKSEELKVYEEGCLSVPDTYDKVERAASIRFKAQDENGQWY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A+GLLA+C+QHE+DHL+GK+F+EYLS K+ERI + K ++
Sbjct: 121 EKEADGLLAVCVQHELDHLDGKVFVEYLSVLKRERIRSRLRKQQRE 166
>gi|413963943|ref|ZP_11403170.1| peptide deformylase [Burkholderia sp. SJ98]
gi|413929775|gb|EKS69063.1| peptide deformylase [Burkholderia sp. SJ98]
Length = 167
Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLKILNYPDKRLNKVAKPVAVVDDRIRKLVADMAETMYAAPGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S ++QL VFINP+++W S++K+ + EGCLS+PGI++ ++R ++RV ALN +G+ F
Sbjct: 61 IDVSDAHDQLMVFINPELVWTSEQKKEWEEGCLSVPGIYDFVERPDKVRVKALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLA+C+QHE+DHL G +F+EYLS K+ RI K K
Sbjct: 121 ELDCDGLLAVCIQHEMDHLAGHVFVEYLSTLKQTRIRGKMKK 162
>gi|332525408|ref|ZP_08401568.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
gi|332108677|gb|EGJ09901.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
Length = 172
Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 121/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ YPD RL K+A+P+ D +K+++ +M ETMY + G+GLAA+QVD+H++L +
Sbjct: 1 MAQLPILRYPDPRLHKVAKPVAAVDARVKQLVADMLETMYESEGVGLAATQVDVHERLFV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S ++Q VF+NP+I+ S+E I+ EGCLS+P +++K+ R+ R+ V AL+ EG F
Sbjct: 61 MDTSPEHDQPMVFVNPQIVARSEELVIWEEGCLSVPQVWDKVTRNARVTVRALDREGAEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI +GL A+C QHEIDHL+GK+F+EYLS K+ERI K K ++
Sbjct: 121 EIALDGLAAVCAQHEIDHLDGKVFVEYLSLLKRERIKVKMAKRTRE 166
>gi|299531890|ref|ZP_07045290.1| peptide deformylase [Comamonas testosteroni S44]
gi|298720065|gb|EFI61022.1| peptide deformylase [Comamonas testosteroni S44]
Length = 170
Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL K+A+P+ + D ++ ++ +M ETMY A GIGLAA+Q+D+H+++++
Sbjct: 1 MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ INP+I+W S+EKQ+ EGCLS+PGI++ ++RS ++V AL+ G
Sbjct: 61 IDVSEKRNEPMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDESGNSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI AEG+LAIC+QHE+DHL GK+F+EYLS K+ RI K +K K+
Sbjct: 121 EIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166
>gi|374370226|ref|ZP_09628235.1| peptide deformylase [Cupriavidus basilensis OR16]
gi|373098228|gb|EHP39340.1| peptide deformylase [Cupriavidus basilensis OR16]
Length = 171
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 121/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL +A+P+ D +++++ +M ETMY A GIGLAA+QVD+H+Q+++
Sbjct: 1 MAKLDILTYPDPRLHTVAKPVAVVDDRIRRLVEDMAETMYDAPGIGLAATQVDVHEQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ + LQVFINP+I+W S +++ EGCLS+P ++++++R +RV ALN +G+ F
Sbjct: 61 IDISETRDALQVFINPEILWSSDTRKVAEEGCLSVPEVYDRVERPDHVRVRALNEKGEPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI A+ LLA+C+QHEIDHL GK+F+EYLS K +RI K K
Sbjct: 121 EIEADELLAVCIQHEIDHLKGKVFVEYLSPLKLQRIKSKLTK 162
>gi|358635111|dbj|BAL22408.1| peptide deformylase [Azoarcus sp. KH32C]
Length = 167
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 124/165 (75%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL A+P+ D ++++++ +M ETMY A GIGLAA+QVD+HK++++
Sbjct: 1 MALLPILRYPDPRLHIRAKPVEAVDDSIRQLVKDMAETMYEAPGIGLAATQVDVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ +QLQVFINP+II S E + EGCLS+PGI+ + R++ +RV AL+ EGK F
Sbjct: 61 IDISEDRSQLQVFINPEIIEKSGE-HVGEEGCLSVPGIYETVCRAEHVRVRALDSEGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLA+C+QHE+DHL GK+F+EYLS K RI + K +
Sbjct: 120 ELEADGLLAVCIQHELDHLEGKVFVEYLSPLKLNRIKTRLAKKAR 164
>gi|56477100|ref|YP_158689.1| peptide deformylase [Aromatoleum aromaticum EbN1]
gi|56313143|emb|CAI07788.1| N-formylmethionyl-tRNA deformylase 1 [Aromatoleum aromaticum EbN1]
Length = 167
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 124/165 (75%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL K A P+ D ++++++ +M ETMY A G+GLAA+QVD+HK++++
Sbjct: 1 MALLPILRYPDPRLHKHAAPVAVVDDSIRQLVRDMAETMYEAPGVGLAATQVDVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + L+ FINP+I+ S E Q EGCLS+PG++ K+ R++R++V AL+ G+ F
Sbjct: 61 IDVSEDRSTLRAFINPEILEKSGE-QTCEEGCLSVPGVYEKVTRAERVKVRALDERGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ AEGLLA+C+QHEIDHL+G++F+EYLS K RI + K +
Sbjct: 120 ELEAEGLLAVCIQHEIDHLDGRVFVEYLSPLKLGRIKARLAKKAR 164
>gi|264680865|ref|YP_003280775.1| peptide deformylase [Comamonas testosteroni CNB-2]
gi|418528331|ref|ZP_13094281.1| peptide deformylase [Comamonas testosteroni ATCC 11996]
gi|262211381|gb|ACY35479.1| peptide deformylase [Comamonas testosteroni CNB-2]
gi|371454707|gb|EHN67709.1| peptide deformylase [Comamonas testosteroni ATCC 11996]
Length = 170
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL K+A+P+ + D ++ ++ +M ETMY A GIGLAA+Q+D+H+++++
Sbjct: 1 MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ INP+I+W S+EKQ+ EGCLS+PGI++ ++RS ++V AL+ G
Sbjct: 61 IDVSEKRNEPMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDENGNSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI AEG+LAIC+QHE+DHL GK+F+EYLS K+ RI K +K K+
Sbjct: 121 EIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166
>gi|407801721|ref|ZP_11148564.1| peptide deformylase [Alcanivorax sp. W11-5]
gi|407024038|gb|EKE35782.1| peptide deformylase [Alcanivorax sp. W11-5]
Length = 168
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M ++ I+ +PD RL+ +A+P+ + D L+K+I +M ETMY A GIGLAA+QV++H++LL+
Sbjct: 1 MAVMDILEFPDPRLRTVAKPVEKVDDELRKLIDDMIETMYDASGIGLAATQVNVHQRLLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
LD+S+ +Q VFINP+I + + + Y+EGCLS+PG + ++R R+RV ALN +G +F
Sbjct: 61 LDVSEERDQPLVFINPEITPLTDDTKTYDEGCLSVPGFYETVERPDRVRVKALNRDGDVF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLA+CLQHEIDHL+GK+F++++S K++RI KK K
Sbjct: 121 EMDCDGLLAVCLQHEIDHLDGKLFVDHISRLKRDRIKKKMEK 162
>gi|50083493|ref|YP_045003.1| peptide deformylase [Acinetobacter sp. ADP1]
gi|49529469|emb|CAG67181.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter sp. ADP1]
Length = 174
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ + ++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDARLRTIAKPVEKVTDEIRQLAADMLETMYEAPGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q VFINPKI ++E Q Y EGCLS+P I++K+ R+ R+++ A+N+ + F
Sbjct: 61 MDLSEEKDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVNRTSRVKIEAINLNDEAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 EIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|91790468|ref|YP_551420.1| peptide deformylase [Polaromonas sp. JS666]
gi|91699693|gb|ABE46522.1| peptide deformylase [Polaromonas sp. JS666]
Length = 173
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 124/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L I+ YPD RL IA+P+ D L+++ +M +TMY A GIGLAA+QVD+H++L++
Sbjct: 1 MTQLTILRYPDPRLHTIAKPVGAVDARLRQLASDMFDTMYEAAGIGLAATQVDVHERLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q V INP+I+W S E ++ +EGCLS+PGI++ ++RS ++V AL+++GK+
Sbjct: 61 IDVSEDRDQPLVLINPEILWASPETRVGDEGCLSVPGIYDGVERSVAVKVQALDLDGKLQ 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
AEG+LA+C+QHE+DHL GK+F+EYLS K+ RI K +K K
Sbjct: 121 VHAAEGMLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIKQKK 165
>gi|170719274|ref|YP_001746962.1| peptide deformylase [Pseudomonas putida W619]
gi|169757277|gb|ACA70593.1| peptide deformylase [Pseudomonas putida W619]
Length = 168
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+TEFD L+++I +M ETMY A GIGLAA+QV++HKQ+++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP + + + Y EGCLS+PG + + R R+RV A + +GK F
Sbjct: 61 MDLSEDRSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQ 166
>gi|119896391|ref|YP_931604.1| peptide deformylase [Azoarcus sp. BH72]
gi|119668804|emb|CAL92717.1| probable peptide deformylase [Azoarcus sp. BH72]
Length = 167
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 120/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL + A P+ D +++K+I +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLPILRYPDPRLHRRAAPVDTVDDDVRKLIDDMAETMYEAPGIGLAATQVDVHRRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ + L INP+I+ E Q+ EGCLS+PG++ K+ R++R+ V AL+ G F
Sbjct: 61 IDISEDKSGLMALINPQILERDGE-QVCEEGCLSVPGVYEKVTRAERVTVRALDRNGHPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ AEGLLA+C+QHEIDHL+GK+F+EYLS K RI K K +
Sbjct: 120 EVAAEGLLAVCIQHEIDHLDGKVFVEYLSPLKLGRIKSKLAKKAR 164
>gi|332531650|ref|ZP_08407547.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
gi|332039013|gb|EGI75442.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
Length = 174
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 121/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL +A+P+ D +K++I +M ETMY GIGLAA+Q+++H++L++
Sbjct: 1 MALLPILTYPDPRLHTVAQPVQAVDARIKQLIADMFETMYDMNGIGLAATQINVHERLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q QVFINP+I+W S E +I EGCLS+PGI++ ++R +R+ V AL+ EG+
Sbjct: 61 IDVSEGRDQPQVFINPEIVWASPETKINEEGCLSVPGIYDGVERHERVHVRALDGEGQSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ EGLL+IC+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 121 VVECEGLLSICIQHEMDHLMGKVFVEYLSPLKRNRIKTKMQK 162
>gi|388255977|ref|ZP_10133158.1| peptide deformylase [Cellvibrio sp. BR]
gi|387939677|gb|EIK46227.1| peptide deformylase [Cellvibrio sp. BR]
Length = 169
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 123/165 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ +A+P+TE D +++++ +M ETMY A GIGLAASQV++HK++++
Sbjct: 1 MALLPILEFPDPRLRTVAKPVTEVDDKIRQLVDDMFETMYDAPGIGLAASQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q VFINP+I E Y+EGCLS+PG + + R IRV AL+ +GK F
Sbjct: 61 IDVSEDKSQPLVFINPEIEVLDPELSEYDEGCLSVPGFYETVVRPNHIRVKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
EI EGLLA+C+QHE+DHLNGK+F++++S FK+ RI K K K
Sbjct: 121 EITPEGLLAVCIQHELDHLNGKLFVDHISPFKRTRIRAKLEKKHK 165
>gi|398805096|ref|ZP_10564077.1| peptide deformylase [Polaromonas sp. CF318]
gi|398092258|gb|EJL82673.1| peptide deformylase [Polaromonas sp. CF318]
Length = 173
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 125/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+ L I+ YPD RL +A+P+ D L+K+ +M ETMY A GIGLAA+QV++H++L++
Sbjct: 1 MSQLTILRYPDPRLHTVAKPVAAVDARLRKLADDMFETMYEASGIGLAATQVNVHERLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ NQ V INP+I+W S+EK++ +EGCLS+PGI++ ++RS I+V AL+++GK
Sbjct: 61 IDVSEDRNQPMVLINPEILWASEEKRVGDEGCLSVPGIYDGVERSIAIKVQALDLDGKPQ 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
AEG+LA+C+QHE+DHL GK+F+EYLS K+ RI K +K K
Sbjct: 121 VYEAEGMLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKMIKQKK 165
>gi|349574643|ref|ZP_08886581.1| peptide deformylase [Neisseria shayeganii 871]
gi|348013756|gb|EGY52662.1| peptide deformylase [Neisseria shayeganii 871]
Length = 167
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 125/162 (77%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL +A+P+ E D +++++ +M ETMY A GIGLAA+QV++H+++++
Sbjct: 1 MALLNILHYPDERLHTVAKPVAEVDDRIRRLVADMAETMYEARGIGLAATQVNVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +QL+V INP II + E +Y EGCLS+PGI++K+ R++ + V ALN G+ +
Sbjct: 61 MDLSEDRSQLRVLINPMIIEKNGET-VYEEGCLSVPGIYDKVTRAENVTVEALNEHGEKY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNGK+F+EYLS K++RI K K
Sbjct: 120 TLQADGLLAICIQHEIDHLNGKVFVEYLSRLKQDRIKTKMRK 161
>gi|383756315|ref|YP_005435300.1| peptide deformylase Def [Rubrivivax gelatinosus IL144]
gi|381376984|dbj|BAL93801.1| peptide deformylase Def [Rubrivivax gelatinosus IL144]
Length = 172
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 121/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ YPD RL K+A+P+ D +K+++ +M ETMY + G+GLAA+QVD+H++L +
Sbjct: 1 MAQLPILRYPDPRLHKVAKPVEAVDARIKQLVADMLETMYESEGVGLAATQVDVHERLFV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S ++Q VFINP+I+ S+E I+ EGCLS+P +++K+ R+ R+ V AL+ EG F
Sbjct: 61 MDTSPEHDQPMVFINPQIVARSEELVIWEEGCLSVPQVWDKVTRNARVTVRALDREGAEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+I +GL A+C QHEIDHL+GK+F+EYLS K+ERI K K ++
Sbjct: 121 DIALDGLAAVCAQHEIDHLDGKVFVEYLSLLKRERIKIKMAKRARE 166
>gi|348590759|ref|YP_004875221.1| peptide deformylase [Taylorella asinigenitalis MCE3]
gi|347974663|gb|AEP37198.1| Peptide deformylase [Taylorella asinigenitalis MCE3]
gi|399117088|emb|CCG19902.1| peptide deformylase [Taylorella asinigenitalis 14/45]
Length = 170
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 121/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RLKKIA + D +++KI+ +M ETMY + G+GLAA+QVDIHK++++
Sbjct: 1 MALLPILKYPDPRLKKIASDVEVVDDSVRKIVEDMAETMYASNGVGLAATQVDIHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N L V INP+I W+S EK ++ EGCLS+P I++ ++R +RV AL++ GK F
Sbjct: 61 IDVSEERNNLLVLINPEITWFSPEKIVHEEGCLSVPTIYDNVERFSEVRVKALDLNGKEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F+E LS K RI K K
Sbjct: 121 ELKADGLLAICIQHELDHLMGKVFVEKLSALKLNRIKTKIKK 162
>gi|221069823|ref|ZP_03545928.1| peptide deformylase [Comamonas testosteroni KF-1]
gi|220714846|gb|EED70214.1| peptide deformylase [Comamonas testosteroni KF-1]
Length = 170
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 123/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL K+A+P+ + D ++ ++ +M ETMY A GIGLAA+Q+D+H+++++
Sbjct: 1 MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ INP+I+W S E Q+ EGCLS+PGI++ ++RS ++V AL+ G
Sbjct: 61 IDVSEERNEPMALINPEILWASDETQLGEEGCLSVPGIYDGVERSIAVKVKALDENGNSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI AEG+LAIC+QHE+DHL GK+F+EYLS K+ RI K +K K+
Sbjct: 121 EIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166
>gi|226942187|ref|YP_002797260.1| peptide deformylase [Azotobacter vinelandii DJ]
gi|259645177|sp|C1DFV8.1|DEF_AZOVD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|226717114|gb|ACO76285.1| Formylmethionine deformylase protein [Azotobacter vinelandii DJ]
Length = 168
Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+PI D ++++I +M ETMY A GIGLAA+QV++HK+L++
Sbjct: 1 MAILTILEFPDPRLRTIAKPIETVDDGIRRLIDDMFETMYAAPGIGLAATQVNVHKRLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+ +VFINP+ ++E + Y EGCLS+PG + + R +++R+ AL+ +G+ F
Sbjct: 61 MDLSEDKNEPRVFINPEFEALTEELEPYQEGCLSVPGFYENVDRPQKVRIRALDRDGQPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E++AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
>gi|121610998|ref|YP_998805.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
gi|121555638|gb|ABM59787.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
Length = 170
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 119/164 (72%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILD 62
LLPI+ YPD RL +IA P+ D ++ + +M TMY A GIGLAA+QVD+H++LL++D
Sbjct: 4 LLPILRYPDPRLHRIARPVLAVDERIRALADDMLATMYQAQGIGLAATQVDVHERLLVVD 63
Query: 63 ISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+S ++Q V INP+IIW S EKQ +NEGCLS+PGI++ ++R + V AL+ G+ I
Sbjct: 64 VSDEHDQPLVLINPEIIWTSAEKQTHNEGCLSVPGIYDDVERFDAVHVRALDTRGQPQVI 123
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+GLLA+CLQHE+DHL GK+F++YLS K+ RI + +K ++
Sbjct: 124 EADGLLAMCLQHEMDHLQGKVFVQYLSPLKRNRIKTRMIKQQRE 167
>gi|74316032|ref|YP_313772.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259]
gi|74055527|gb|AAZ95967.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC
25259]
Length = 177
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 125/166 (75%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I++YPD RL +A+P+ D ++K++ +M ETMY A GIGLAA+QV++H+++++
Sbjct: 1 MARLDILHYPDSRLHTVAKPVEAVDARIRKLVDDMAETMYAAPGIGLAATQVNVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ + L+VFINP+I+ S ++ EGCLS+PG+F+++ R++R+ V AL+ +GK F
Sbjct: 61 IDTSETRDALRVFINPEIVAQSGREE-SEEGCLSVPGVFDRVTRAERVTVRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GLLA+C+QHE+DHL GK+F++YLS K+ RI K LK ++
Sbjct: 120 ELEADGLLAVCIQHELDHLAGKVFVDYLSPLKRNRIKTKLLKQARE 165
>gi|104779338|ref|YP_605836.1| peptide deformylase [Pseudomonas entomophila L48]
gi|95108325|emb|CAK13019.1| peptide deformylase 1 [Pseudomonas entomophila L48]
Length = 168
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+TEFD L+++I +M ETMY A GIGLAA+QV++HKQ+++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP + + + Y EGCLS+PG + + R R+RV A + +GK +
Sbjct: 61 MDLSEDRSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQ 166
>gi|334132225|ref|ZP_08505986.1| Peptide deformylase, PDF [Methyloversatilis universalis FAM5]
gi|333442871|gb|EGK70837.1| Peptide deformylase, PDF [Methyloversatilis universalis FAM5]
Length = 167
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+K A P+ D +L+++ +M ETMY A GIGLAA+QVD+HKQ+++
Sbjct: 1 MALLPILKFPDPRLRKKAAPVAAVDDSLRRLAADMAETMYAAPGIGLAATQVDVHKQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ + L INP+I+ E Q+Y EGCLS+PGI++K+ R++ ++V L ++G
Sbjct: 61 IDISEDKSGLITLINPRIVERDGE-QVYEEGCLSVPGIYDKVTRAEHVKVRTLTLDGSET 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A GLLA+C+QHE+DHL GK+F+++LS K+ RI K K ++
Sbjct: 120 EIDAHGLLAVCIQHEMDHLQGKVFVDHLSQLKQTRIKTKLAKQARE 165
>gi|403050537|ref|ZP_10905021.1| peptide deformylase [Acinetobacter bereziniae LMG 1003]
gi|445424689|ref|ZP_21437024.1| peptide deformylase [Acinetobacter sp. WC-743]
gi|444754314|gb|ELW78935.1| peptide deformylase [Acinetobacter sp. WC-743]
Length = 176
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ ++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVDAVTDEIRQLAADMFETMYEAPGIGLAATQVDQHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q VFINPKI ++E Y EGCLS+P I++K++R R+++ A++++GK F
Sbjct: 61 MDLSENKDQPMVFINPKITPLTEETFSYEEGCLSVPQIYDKVERPSRVKIEAIDLDGKAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLA+C+QHE+DHLNGK+F++YLS K++R +K K +++
Sbjct: 121 ELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQ 166
>gi|398847284|ref|ZP_10604208.1| peptide deformylase [Pseudomonas sp. GM84]
gi|398251732|gb|EJN36965.1| peptide deformylase [Pseudomonas sp. GM84]
Length = 168
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+TEFD L+++I +M ETMY A GIGLAA+QV++HKQ+++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP + + + Y EGCLS+PG + + R R+RV A + +GK F
Sbjct: 61 MDLSEDRSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ EGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQ 166
>gi|350544370|ref|ZP_08913989.1| Peptide deformylase [Candidatus Burkholderia kirkii UZHbot1]
gi|350527835|emb|CCD37197.1| Peptide deformylase [Candidatus Burkholderia kirkii UZHbot1]
Length = 167
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A G+GLAA+QVD+H+++ +
Sbjct: 1 MVLLKILNYPDKRLNKVAKPVAVVDDRIRKLVADMAETMYAAPGVGLAATQVDVHERVTV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S +++L VFINP+++W S+EK+ + EGCLS+PGI++ ++R ++ V ALN +G+ F
Sbjct: 61 IDVSDTHDELMVFINPELVWTSEEKKEWEEGCLSVPGIYDFVERPDKVCVKALNEKGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLA+C+QHE+DHL G +F+EYLS K+ RI K K
Sbjct: 121 ELDCDGLLAVCIQHEMDHLAGHVFVEYLSPLKQTRIRGKMKK 162
>gi|297537405|ref|YP_003673174.1| peptide deformylase [Methylotenera versatilis 301]
gi|297256752|gb|ADI28597.1| peptide deformylase [Methylotenera versatilis 301]
Length = 166
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL K+A+P+ E D +++++I +M ETMY A GIGLAA+QVD H QLLI
Sbjct: 1 MAILDILNYPDPRLHKVAKPVKEVDASIRRLIDDMRETMYDAPGIGLAATQVDQHIQLLI 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ + LQVFINPKII S Q Y EGCLS+PG++ + R++++ V AL+ GK F
Sbjct: 61 IDTSETKDHLQVFINPKIIEKSG-VQDYEEGCLSVPGVYETVTRAEKVTVEALDYNGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ AEGLL+IC+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 120 TLKAEGLLSICIQHEMDHLLGKVFVEYLSPLKRSRIKNKMLK 161
>gi|225024414|ref|ZP_03713606.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC
23834]
gi|224942795|gb|EEG24004.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC
23834]
Length = 167
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D +K+++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILRYPDPRLNLVAKPVEQVDERIKQLVADMAETMYEAKGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +QLQV INP II E IY EGCLS+PG+++K+ R++ I AL+ EGK +
Sbjct: 61 MDLSESRDQLQVLINPVIIERDGET-IYEEGCLSVPGVYDKVTRAESIVAEALDAEGKPY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
I A+GL AIC+QHEIDHL+GK+F++YLS K+ERI K K
Sbjct: 120 TIHADGLQAICIQHEIDHLDGKVFVQYLSRLKQERIKTKMKK 161
>gi|440743505|ref|ZP_20922814.1| peptide deformylase [Pseudomonas syringae BRIP39023]
gi|298160851|gb|EFI01868.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|440375270|gb|ELQ11980.1| peptide deformylase [Pseudomonas syringae BRIP39023]
Length = 168
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 126/165 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+I + E Y EGCLS+PG + + R +++RV AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E++AEGLLAIC+QHE DHLNGK+F++YLSN K++RI KK K K
Sbjct: 121 ELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 165
>gi|331007625|ref|ZP_08330767.1| Peptide deformylase [gamma proteobacterium IMCC1989]
gi|330418565|gb|EGG93089.1| Peptide deformylase [gamma proteobacterium IMCC1989]
Length = 166
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 120/163 (73%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ +PD RL+ +A+P+ E ++II +M ETMY A GIGLAA+QV+IH+Q+++
Sbjct: 1 MAQLPILEFPDARLRTVAKPVAEVTDATRRIIDDMFETMYAAPGIGLAATQVNIHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ QVFINP I +E Y+EGCLS+PG + ++R K I+V A++ G F
Sbjct: 61 MDLSEDKSEPQVFINPSITVQGEELDSYDEGCLSVPGFYESVERPKSIKVEAIDRNGSPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
I EGLLA+C+QHEIDHLNGK+F++YLSN K++RI KK K
Sbjct: 121 IIEPEGLLAVCIQHEIDHLNGKLFVDYLSNMKRQRIRKKLEKQ 163
>gi|375107572|ref|ZP_09753833.1| peptide deformylase [Burkholderiales bacterium JOSHI_001]
gi|374668303|gb|EHR73088.1| peptide deformylase [Burkholderiales bacterium JOSHI_001]
Length = 175
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ D +++++ +M ETM+ A G+GLAA+QVD+H+++++
Sbjct: 1 MALLNILRYPDPRLHTVAKPVAAVDDRIRQLVDDMIETMHAAEGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S ++Q +V INP+IIW S++ + EGCLS+P I++K++R R+RV AL +G+
Sbjct: 61 MDTSDTHDQPRVLINPEIIWASEDLLVNEEGCLSVPTIYDKVQRHARVRVRALGRDGQPL 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A+GL A+C+QHE+DHL GK+F+EYLS K++RI +K LK +++
Sbjct: 121 EFDADGLTAVCVQHEMDHLLGKVFVEYLSPLKRDRIKQKMLKKVRE 166
>gi|26986813|ref|NP_742238.1| peptide deformylase [Pseudomonas putida KT2440]
gi|148545341|ref|YP_001265443.1| peptide deformylase [Pseudomonas putida F1]
gi|386009734|ref|YP_005928011.1| hypothetical protein PPUBIRD1_0097 [Pseudomonas putida BIRD-1]
gi|395446391|ref|YP_006386644.1| peptide deformylase [Pseudomonas putida ND6]
gi|397693663|ref|YP_006531543.1| peptide deformylase 1 [Pseudomonas putida DOT-T1E]
gi|421523117|ref|ZP_15969748.1| peptide deformylase [Pseudomonas putida LS46]
gi|32363155|sp|Q88RR1.1|DEF1_PSEPK RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|24981409|gb|AAN65702.1|AE016196_13 polypeptide deformylase [Pseudomonas putida KT2440]
gi|148509399|gb|ABQ76259.1| peptide deformylase [Pseudomonas putida F1]
gi|313496440|gb|ADR57806.1| Def [Pseudomonas putida BIRD-1]
gi|388560388|gb|AFK69529.1| peptide deformylase [Pseudomonas putida ND6]
gi|397330393|gb|AFO46752.1| Peptide deformylase 1 [Pseudomonas putida DOT-T1E]
gi|402752938|gb|EJX13441.1| peptide deformylase [Pseudomonas putida LS46]
Length = 168
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+TEFD L+++I +M ETMY A GIGLAA+QV++HKQ+++
Sbjct: 1 MAILNILEFPDPRLRTLAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP + + + Y EGCLS+PG + + R R+RV A + +GK F
Sbjct: 61 MDLSEDRSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ EGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQ 166
>gi|397685166|ref|YP_006522485.1| peptide deformylase [Pseudomonas stutzeri DSM 10701]
gi|395806722|gb|AFN76127.1| peptide deformylase [Pseudomonas stutzeri DSM 10701]
Length = 168
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++H+++++
Sbjct: 1 MAILNILEFPDTRLRTIAKPVDVVDDGIRQLIDDMFETMYDAPGIGLAATQVNVHRRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + + E Y EGCLS+PG + + R +++RV AL+ +G+ F
Sbjct: 61 MDLSEDKSEPRVFINPEFEFLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGQPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLSN K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162
>gi|347820052|ref|ZP_08873486.1| peptide deformylase [Verminephrobacter aporrectodeae subsp.
tuberculatae At4]
Length = 169
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 118/162 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL IA P+ D ++ + +M ETMY A G+GLAA+QVD+H++LL+
Sbjct: 1 MALLPILCYPDPRLHTIARPVQAVDERIRTLADDMLETMYDAQGVGLAATQVDVHERLLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
D+S+ ++Q QV INP+IIW S+EK + +EGCLS+PGI++ ++R + V AL+ G
Sbjct: 61 FDVSEEHDQPQVLINPEIIWTSEEKHLNSEGCLSVPGIYDGVERFVAVHVRALDARGASR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
I A+GLLA+C+QHE+DHL GK+F++YLS K+ RI + LK
Sbjct: 121 VIEADGLLAVCIQHEMDHLVGKLFVQYLSPLKRGRIKTRMLK 162
>gi|34499720|ref|NP_903935.1| peptide deformylase [Chromobacterium violaceum ATCC 12472]
gi|39930829|sp|Q7NQ75.1|DEF_CHRVO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|34105571|gb|AAQ61925.1| Polypeptide deformylase [Chromobacterium violaceum ATCC 12472]
Length = 167
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 125/166 (75%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL +A+P+ FD L++ I +M ETMY A GIGLAA+QVD H++L++
Sbjct: 1 MALLNILHYPDERLHTVAKPVEVFDAALQQQIDDMFETMYEAKGIGLAATQVDYHRRLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ +VFINP+I+ E +Y EGCLS+PGI++K+ R++R++V A + +GK F
Sbjct: 61 MDISEERDERRVFINPEIVEKDGET-VYEEGCLSVPGIYDKVTRAERVKVKAQDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GLLAIC+QHE+DHLNG +F+E LS K++RI K K K+
Sbjct: 120 ELEADGLLAICIQHELDHLNGVVFVERLSQMKQQRIKTKLKKREKQ 165
>gi|66043290|ref|YP_233131.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
gi|422643832|ref|ZP_16706971.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|422672606|ref|ZP_16731969.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
gi|63253997|gb|AAY35093.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
gi|330957385|gb|EGH57645.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330970343|gb|EGH70409.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
Length = 168
Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 125/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP+I + E Y EGCLS+PG + + R +++RV AL+ +GK +
Sbjct: 61 MDLSEDRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E++AEGLLAIC+QHE DHLNGK+F++YLSN K++RI KK K K
Sbjct: 121 ELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 165
>gi|430375895|ref|ZP_19430298.1| peptide deformylase [Moraxella macacae 0408225]
gi|429541126|gb|ELA09154.1| peptide deformylase [Moraxella macacae 0408225]
Length = 176
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ I+ YPD RL+ IA+P+ FD+NL+ +I +M +TMY A G+GLAA+Q+D H QL++
Sbjct: 1 MSIRNILSYPDPRLRTIAKPVESFDVNLQTLIDDMFQTMYAAKGVGLAATQIDEHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ QVFINP + +E+ Y EGCLS+P ++K+ R K+++++A + EG F
Sbjct: 61 MDLSEEGNQPQVFINPVVTPLVEEQFTYEEGCLSVPDYYDKVDRPKKVKINAKDREGNDF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ AEGLLA+C+QHEIDHLNGK+F++YLS K++R + K IK+
Sbjct: 121 ELEAEGLLAVCIQHEIDHLNGKLFVDYLSKLKQDRARDRVRKVIKQ 166
>gi|254429252|ref|ZP_05042959.1| peptide deformylase [Alcanivorax sp. DG881]
gi|196195421|gb|EDX90380.1| peptide deformylase [Alcanivorax sp. DG881]
Length = 168
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ +A+P+ + D L+K+I +M ETMY A GIGLAA+QV++H++LL+
Sbjct: 1 MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMIETMYDASGIGLAATQVNVHQRLLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ +V+INP+I + E Y EGCLS+PG + K+KR+ R+R++AL+ +G F
Sbjct: 61 MDLSEERNEPKVYINPQITPLTDELAPYEEGCLSVPGFYEKVKRAARVRINALDRDGNAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLA C+QHEIDHL+GK+F++Y+S K++RI KK K
Sbjct: 121 EVEADELLATCIQHEIDHLDGKLFVDYVSRLKRDRIKKKLEK 162
>gi|404400582|ref|ZP_10992166.1| peptide deformylase [Pseudomonas fuscovaginae UPB0736]
Length = 168
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 126/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+ E D ++++I +M ETMY A GIGLAA+QV++H+++++
Sbjct: 1 MAILNILEFPDPRLRTLAKPVAEVDDKVRQLIDDMFETMYEAPGIGLAATQVNVHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ ++EK Y EGCLS+PG + + R R+R+ AL+ +GK F
Sbjct: 61 MDLSEDRSEPRVFINPEFEALTEEKDQYQEGCLSVPGFYENVDRPTRVRIKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELEADGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166
>gi|254282388|ref|ZP_04957356.1| peptide deformylase [gamma proteobacterium NOR51-B]
gi|219678591|gb|EED34940.1| peptide deformylase [gamma proteobacterium NOR51-B]
Length = 168
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 119/166 (71%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ +PD RL+ A+P+TE D ++++I +M ETMY A GIGLAASQVD+H+++++
Sbjct: 1 MAILPILEFPDPRLRTRAKPVTEVDQRIRRLIDDMLETMYDAPGIGLAASQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ +VFINP++ K Y+EGCLS+PG F + R I V AL+ EG F
Sbjct: 61 IDVSENRDEPRVFINPEVTVIDKTLGSYDEGCLSVPGFFETVNRPSSIEVTALDREGDTF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+GLLAICLQHEIDHL GK+F++YLS K++RI K K K+
Sbjct: 121 AEELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRSKLEKEHKR 166
>gi|429211000|ref|ZP_19202166.1| peptide deformylase [Pseudomonas sp. M1]
gi|428158414|gb|EKX04961.1| peptide deformylase [Pseudomonas sp. M1]
Length = 168
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDSVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP++ ++E Y EGCLS+PG + + R R+RV AL+ +GK F
Sbjct: 61 MDLSEDKSEPRVFINPELEPLTQEMGEYQEGCLSVPGFYENVDRPLRVRVKALDRDGKAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E IAEGLLA+C+QHE DHLNGK+F++YLSN K++RI KK K ++
Sbjct: 121 EEIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQ 166
>gi|374704487|ref|ZP_09711357.1| peptide deformylase [Pseudomonas sp. S9]
Length = 168
Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 125/163 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +L+++I +M ETMY A GIGLAA+QV++HK+L++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDDLRQLIDDMFETMYEAPGIGLAATQVNVHKRLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ ++E Y EGCLS+PG + I R ++++V AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPEFESLTEEMDQYQEGCLSVPGFYENIDRPQKVKVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQ 163
>gi|257485584|ref|ZP_05639625.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|289627009|ref|ZP_06459963.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289647926|ref|ZP_06479269.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
gi|422583065|ref|ZP_16658194.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|422595418|ref|ZP_16669706.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422606582|ref|ZP_16678590.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
gi|422682534|ref|ZP_16740799.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|330867901|gb|EGH02610.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330890232|gb|EGH22893.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
gi|330985723|gb|EGH83826.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331011873|gb|EGH91929.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 168
Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 125/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP+I + E Y EGCLS+PG + + R +++RV AL+ +GK +
Sbjct: 61 MDLSEDRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E++AEGLLAIC+QHE DHLNGK+F++YLSN K++RI KK K K
Sbjct: 121 ELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 165
>gi|91774543|ref|YP_544299.1| peptide deformylase [Methylobacillus flagellatus KT]
gi|91708530|gb|ABE48458.1| peptide deformylase [Methylobacillus flagellatus KT]
Length = 167
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 121/163 (74%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL K+A P+ E + ++++++ +M ETMY A GIGLAA+QVD+HKQ+++
Sbjct: 1 MAILDILTYPDPRLHKVAAPVEEVNDDIRQLVRDMAETMYAAPGIGLAATQVDVHKQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + LQVFINPKI+ ++ Y EGCLS+PGI+ + R+ + V AL+ GK F
Sbjct: 61 IDLSEDKSALQVFINPKIVSQCGSQE-YEEGCLSVPGIYEPVTRAAEVTVEALDEHGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
+ A+GLLA+C+QHEIDHL GK+F+EYLS+ K+ RI K K
Sbjct: 120 TLKADGLLAVCIQHEIDHLLGKVFVEYLSSLKQTRIKNKLKKR 162
>gi|319764921|ref|YP_004128858.1| peptide deformylase [Alicycliphilus denitrificans BC]
gi|317119482|gb|ADV01971.1| peptide deformylase [Alicycliphilus denitrificans BC]
Length = 171
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 120/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL K+A+P+ D ++ I+ +M TMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+I W S E ++ EGCLS+PGI++ ++RS + AL+ +G+
Sbjct: 61 IDVSEERDQPLVLINPEITWASPETRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQPR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
I AEGLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK K+
Sbjct: 121 TIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQ 166
>gi|365089376|ref|ZP_09328252.1| peptide deformylase [Acidovorax sp. NO-1]
gi|363416784|gb|EHL23882.1| peptide deformylase [Acidovorax sp. NO-1]
Length = 172
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 121/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL K+A P+ D ++ ++ +M TMY A GIGLAA+QVD+H++L++
Sbjct: 1 MAILPILCYPDPRLHKVARPVEAVDDRIRALVSDMLATMYDAHGIGLAATQVDVHERLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+++W S E+ + +EGCLS+PGI++ ++R + V AL+ +G+
Sbjct: 61 IDVSEERDQPLVLINPELVWTSAERHVNDEGCLSVPGIYDGVERFDAVHVRALDAQGQSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
I A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI K +K ++
Sbjct: 121 VIEADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMVKQQQR 166
>gi|429333783|ref|ZP_19214474.1| peptide deformylase [Pseudomonas putida CSV86]
gi|428761587|gb|EKX83810.1| peptide deformylase [Pseudomonas putida CSV86]
Length = 168
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 128/166 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+TE D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVTEVDDAIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP++ +++ Y EGCLS+PG + + R ++RV AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPELEELTQDMGQYQEGCLSVPGFYENVDRPLQVRVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166
>gi|409422323|ref|ZP_11259426.1| peptide deformylase [Pseudomonas sp. HYS]
Length = 168
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 125/163 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P++E D ++++I +M ETMY A GIGLAA+Q+++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVSEVDDGVRQLIDDMFETMYEAPGIGLAATQINVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP++ + E Y EGCLS+PG + + R R++V AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPELEMLTDEMDQYQEGCLSVPGFYENVDRPIRVKVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E++AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQ 163
>gi|110832992|ref|YP_691851.1| peptide deformylase [Alcanivorax borkumensis SK2]
gi|122959726|sp|Q0VTE1.1|DEF_ALCBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|110646103|emb|CAL15579.1| peptide deformylase [Alcanivorax borkumensis SK2]
Length = 168
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ +A+P+ + D L+K+I +M ETMY A GIGLAA+QVD+H QL++
Sbjct: 1 MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMFETMYAAPGIGLAATQVDVHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+++N+ VFINP+I ++E+ Y EGCLS+PG + K+ R R+R++AL+ +G F
Sbjct: 61 MDLSEDHNKPMVFINPQITPLTEEQAPYEEGCLSVPGFYEKVTRPARVRINALDRDGNAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLA C+QHE+DHL+GK+F++Y+S K++RI KK K
Sbjct: 121 EVEADELLATCIQHEMDHLDGKLFVDYVSRLKRDRIKKKLEK 162
>gi|237801646|ref|ZP_04590107.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331024505|gb|EGI04561.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 168
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 125/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP+I + E Y EGCLS+PG + + R +++RV AL+ +GK +
Sbjct: 61 MDLSEDRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E++AEGLLAIC+QHE DHLNGK+F++YLSN K++RI KK K K
Sbjct: 121 EMVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 165
>gi|330827125|ref|YP_004390428.1| peptide deformylase [Alicycliphilus denitrificans K601]
gi|329312497|gb|AEB86912.1| Peptide deformylase [Alicycliphilus denitrificans K601]
Length = 171
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 120/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL K+A+P+ D ++ I+ +M TMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+I W S E ++ EGCLS+PGI++ ++RS + AL+ +G+
Sbjct: 61 IDVSEERDQPLVLINPEITWASPEMRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQPR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
I AEGLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK K+
Sbjct: 121 TIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQ 166
>gi|351731701|ref|ZP_08949392.1| peptide deformylase [Acidovorax radicis N35]
Length = 169
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 119/163 (73%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL K+A PI D ++ ++ +M TMY A GIGLAA+QVD+H++L++
Sbjct: 1 MAILPILCYPDPRLHKVAHPIQAVDDRIRTLVSDMLATMYDAHGIGLAATQVDVHERLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+++W S EK + +EGCLS+PGI++ ++R + V AL+ +G+
Sbjct: 61 IDVSEERDQPLVLINPELVWTSAEKHLNDEGCLSVPGIYDGVERFDAVHVRALDAQGQSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
I A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI K +K
Sbjct: 121 VIEADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIKQ 163
>gi|422224061|ref|ZP_16383869.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
gi|422589569|ref|ZP_16664230.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422652050|ref|ZP_16714839.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330876380|gb|EGH10529.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330965122|gb|EGH65382.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|407992704|gb|EKG34275.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
Length = 168
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 125/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP+I + E Y EGCLS+PG + + R +++RV AL+ +GK +
Sbjct: 61 MDLSEDRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E++AEGLLAIC+QHE DHLNGK+F++YLSN K++RI KK K K
Sbjct: 121 ELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 165
>gi|302186428|ref|ZP_07263101.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
Length = 168
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 124/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP+I + E Y EGCLS+PG + + R +++RV AL+ +GK +
Sbjct: 61 MDLSEDRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E++AEGLLA C+QHE DHLNGK+F++YLSN K++RI KK K K
Sbjct: 121 ELVAEGLLATCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 165
>gi|407367489|ref|ZP_11114021.1| peptide deformylase [Pseudomonas mandelii JR-1]
Length = 168
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILDILEFPDSRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E + Y EGCLS+PG + + R ++++V AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPEFEPLTDEMEQYQEGCLSVPGFYENVDRPQKVKVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLSN K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162
>gi|319778670|ref|YP_004129583.1| peptide deformylase [Taylorella equigenitalis MCE9]
gi|317108694|gb|ADU91440.1| Peptide deformylase [Taylorella equigenitalis MCE9]
gi|399115290|emb|CCG18089.1| peptide deformylase [Taylorella equigenitalis 14/56]
Length = 169
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 122/166 (73%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RLKKIA+ + D ++KKI+ +M ETMY A G+GLAA+QVDIHK++++
Sbjct: 1 MAVLPILKYPDPRLKKIAKDVDVVDESIKKIVEDMAETMYAANGVGLAATQVDIHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N L V INP+II S+EK I+ EGCLS+P I++ ++R +RV AL+ G F
Sbjct: 61 IDVSEERNDLLVLINPEIIGISEEKVIHEEGCLSVPTIYDNVERFSEVRVKALDQNGNAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A+GLLAIC+QHE+DHL GK+F+E LS K+ RI K K K+
Sbjct: 121 EFKADGLLAICVQHELDHLMGKVFVEKLSALKQNRIKTKLKKAQKE 166
>gi|400287228|ref|ZP_10789260.1| peptide deformylase [Psychrobacter sp. PAMC 21119]
Length = 184
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 118/165 (71%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL+ IA+P+ E +K +I +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSYPDPRLRTIAKPVKEVTAEIKTLIADMIETMYDAQGIGLAASQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N +VF+NPK+ +EKQ Y EGCLS+P +++ ++R ++R+ AL+ G+
Sbjct: 61 IDLSEDKNDPKVFVNPKVTPLVEEKQPYEEGCLSVPEVYDSVERPNKVRIEALDENGEKI 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ EGLLA+C+QHE+DHLNG IF++YLS K+ R K K +K
Sbjct: 121 DEEVEGLLAVCIQHEMDHLNGVIFVDYLSRLKQTRARDKVRKVLK 165
>gi|410091109|ref|ZP_11287686.1| peptide deformylase [Pseudomonas viridiflava UASWS0038]
gi|409761677|gb|EKN46736.1| peptide deformylase [Pseudomonas viridiflava UASWS0038]
Length = 168
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 125/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAIVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+I + E Y EGCLS+PG + + R +++RV AL +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEIEMLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALGRDGEPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E++AEGLLAIC+QHE DHLNGK+F++YLSN K++RI KK K K
Sbjct: 121 ELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 165
>gi|253997550|ref|YP_003049614.1| peptide deformylase [Methylotenera mobilis JLW8]
gi|253984229|gb|ACT49087.1| peptide deformylase [Methylotenera mobilis JLW8]
Length = 166
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 118/163 (72%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL +A+P+ E + + ++I +M ETMY A GIGLAA+QVD H QLL+
Sbjct: 1 MAILDILNYPDPRLHTVAKPVKEVNAAVHRLIDDMAETMYAAPGIGLAATQVDQHVQLLL 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ +QLQVFINPKI+ E Q+Y EGCLS+PG++ + R+++I V AL +GK F
Sbjct: 61 VDTSETKDQLQVFINPKILERDGE-QVYEEGCLSVPGVYESVTRAEKILVEALGKDGKRF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
+ A GLL++C+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 120 TLEAHGLLSVCIQHEMDHLQGKVFVEYLSPLKRNRIKNKMLKQ 162
>gi|93004869|ref|YP_579306.1| peptide deformylase [Psychrobacter cryohalolentis K5]
gi|123386822|sp|Q1QET1.1|DEF_PSYCK RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|92392547|gb|ABE73822.1| peptide deformylase [Psychrobacter cryohalolentis K5]
Length = 184
Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 117/165 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL+ IA P+ E +K +I +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSYPDPRLRTIATPVKEVTAEIKTLITDMIETMYDAQGIGLAASQVDHHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINPK+ +EKQ Y EGCLS+P +++K++R ++R+ AL+ G
Sbjct: 61 MDLSEDKDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEALDENGNKI 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ EGLLA+C+QHE+DHLNG IF++YLS K+ R K K +K
Sbjct: 121 DEEVEGLLAVCIQHEMDHLNGVIFVDYLSRLKQTRARDKVRKVLK 165
>gi|71737781|ref|YP_272335.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416013325|ref|ZP_11561485.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
gi|416022744|ref|ZP_11567837.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
gi|71558334|gb|AAZ37545.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320326682|gb|EFW82727.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
gi|320331344|gb|EFW87287.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 168
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 124/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP+I + E Y EGCLS+PG + + R +++RV AL+ GK +
Sbjct: 61 MDLSEDRSEPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRNGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E++AEGLLAIC+QHE DHLNGK+F++YLSN K++RI KK K K
Sbjct: 121 ELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 165
>gi|89902619|ref|YP_525090.1| peptide deformylase [Rhodoferax ferrireducens T118]
gi|89347356|gb|ABD71559.1| peptide deformylase [Rhodoferax ferrireducens T118]
Length = 169
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 123/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD +L +A+P++ D+ ++ +I +M ETMY A GIGLAA+Q+++H++L++
Sbjct: 1 MALLPILCYPDPKLHTVAKPVSTVDVRVQTLIVDMLETMYEAKGIGLAATQINVHERLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + V INP+++W S E + EGCLS+PGI++ ++R + V AL+ +G+
Sbjct: 61 VDVSEERDAPLVLINPQLVWSSAETHLNEEGCLSVPGIYDGVERFDAVTVTALDGQGQSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
I AEGLLA+C+QHE+DHL GK+F+EYLS K+ RI KK LK+ ++
Sbjct: 121 LIEAEGLLAVCIQHEMDHLQGKVFVEYLSPLKRNRIKKKMLKSQRE 166
>gi|239818071|ref|YP_002946981.1| peptide deformylase [Variovorax paradoxus S110]
gi|239804648|gb|ACS21715.1| peptide deformylase [Variovorax paradoxus S110]
Length = 173
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 116/158 (73%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+ YPD RL +A+P+ D +K ++ +M ETMY A GIGLAA+QVD+H++L+++D+S+
Sbjct: 6 ILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDASGIGLAATQVDVHERLVVIDVSE 65
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N+ V INP+IIW S EK + EGCLS+PGI++ + RS ++V AL+ G++ I AE
Sbjct: 66 ERNEPLVLINPEIIWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGELRTIEAE 125
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
GLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 126 GLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQ 163
>gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213968425|ref|ZP_03396568.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
gi|301384287|ref|ZP_07232705.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
gi|302060151|ref|ZP_07251692.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
gi|302130424|ref|ZP_07256414.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422659065|ref|ZP_16721494.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|32363153|sp|Q88B43.1|DEF1_PSESM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213926713|gb|EEB60265.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
gi|331017687|gb|EGH97743.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 168
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 124/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTLAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + VFINP+I + E Y EGCLS+PG + + R +++RV AL+ +GK +
Sbjct: 61 MDLSEDRSAPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E++AEGLLAIC+QHE DHLNGK+F++YLSN K++RI KK K K
Sbjct: 121 ELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 165
>gi|398944790|ref|ZP_10671459.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
gi|398157773|gb|EJM46146.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
Length = 168
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILDILEFPDSRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E + Y EGCLS+PG + + R ++++V AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFETLTDEMEQYQEGCLSVPGFYENVDRPQKVKVKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLSN K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162
>gi|171057041|ref|YP_001789390.1| peptide deformylase [Leptothrix cholodnii SP-6]
gi|170774486|gb|ACB32625.1| peptide deformylase [Leptothrix cholodnii SP-6]
Length = 171
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LLPI+ YPD RL KIA P+ + D +++++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MSLLPILRYPDPRLNKIARPVIQVDERIRQLVSDMFETMYEARGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N V INP+I+ S+E + +EGCLS+P I+++++R +++V AL+ G+ +
Sbjct: 61 IDVSEERNDPLVLINPRIVAASEEMMVGDEGCLSVPTIYDRVERHAQVQVEALDRNGQRY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLL++C+QHE+DHL GK+F+EYLS K+ RI K +K
Sbjct: 121 EFEADGLLSVCVQHEMDHLLGKVFVEYLSPLKRNRIRSKMIK 162
>gi|167031105|ref|YP_001666336.1| peptide deformylase [Pseudomonas putida GB-1]
gi|166857593|gb|ABY96000.1| peptide deformylase [Pseudomonas putida GB-1]
Length = 168
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 123/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+TEFD L+++I +M ETMY A GIGLAA+QV++H Q+++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHLQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP + + + Y EGCLS+PG + + R R+RV A + +GK F
Sbjct: 61 MDLSEDRSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ EGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQ 166
>gi|90019670|ref|YP_525497.1| peptide deformylase [Saccharophagus degradans 2-40]
gi|123090994|sp|Q21PV5.1|DEF_SACD2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|89949270|gb|ABD79285.1| peptide deformylase [Saccharophagus degradans 2-40]
Length = 172
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 121/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ + D ++ +I +M ETMY A GIGLAA+QV++H+Q+L+
Sbjct: 1 MALLPILEFPDPRLRTIAKPVAKVDQRIRTLIDDMFETMYDAPGIGLAATQVNVHEQVLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + + VFINP I +E Y EGCLS+PG + ++ R K IRV AL+ +GK F
Sbjct: 61 IDLGEETKEPMVFINPSIEILDQEHYEYEEGCLSVPGFYEQVSRPKHIRVTALDRDGKEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
I EGLLA+C+QHE+DHLNGK+F++Y+SN K++RI KK K ++
Sbjct: 121 VIEPEGLLAVCVQHEMDHLNGKLFVDYVSNIKRQRIRKKLEKQHRQ 166
>gi|397662433|ref|YP_006503133.1| peptide deformylase [Taylorella equigenitalis ATCC 35865]
gi|394350612|gb|AFN36526.1| peptide deformylase [Taylorella equigenitalis ATCC 35865]
Length = 169
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 122/166 (73%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RLKKIA+ + D ++KKI+ +M ETMY A G+GLAA+QVDIHK++++
Sbjct: 1 MAVLPILKYPDPRLKKIAKDVDVVDESIKKIVEDMAETMYAANGVGLAATQVDIHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N L V INP+II S+EK I+ EGCLS+P I++ ++R +RV AL+ G F
Sbjct: 61 IDVSEERNDLLVLINPEIIGISEEKVIHEEGCLSVPMIYDNVERFSEVRVKALDQNGNAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A+GLLAIC+QHE+DHL GK+F+E LS K+ RI K K K+
Sbjct: 121 EFKADGLLAICVQHELDHLMGKVFVEKLSALKQNRIKTKLKKAQKE 166
>gi|407941292|ref|YP_006856933.1| peptide deformylase [Acidovorax sp. KKS102]
gi|407899086|gb|AFU48295.1| peptide deformylase [Acidovorax sp. KKS102]
Length = 169
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 120/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL K+A P+ D ++ ++ +M TMY A GIGLAA+QVD+H++L++
Sbjct: 1 MAILPILCYPDPRLHKVARPVQAVDDRIRTLVADMLATMYDAHGIGLAATQVDVHERLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+++W S EK + EGCLS+PGI++ ++R + V AL+ +G+
Sbjct: 61 IDVSEERDQPLVLINPELVWTSAEKHLNEEGCLSVPGIYDGVERFNAVHVRALDAQGQSR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
I A+GLLA+C+QHE+DHL GK+F+EYLS K+ RI K +K ++
Sbjct: 121 VIEADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMVKQQRE 166
>gi|71064611|ref|YP_263338.1| peptide deformylase [Psychrobacter arcticus 273-4]
gi|123734488|sp|Q4FVQ4.1|DEF_PSYA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|71037596|gb|AAZ17904.1| peptide deformylase [Psychrobacter arcticus 273-4]
Length = 184
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 117/165 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL+ IA P+ E +K +I +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSYPDPRLRMIATPVKEVTAEIKTLITDMIETMYDAEGIGLAASQVDHHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINPK+ +EKQ Y EGCLS+P +++K++R ++R+ A++ G
Sbjct: 61 MDLSEDKDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEAIDQNGNAI 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ EGLLA+C+QHEIDHLNG IF++YLS K+ R K K +K
Sbjct: 121 DEEVEGLLAVCIQHEIDHLNGVIFVDYLSRLKQTRARDKVRKVLK 165
>gi|431925232|ref|YP_007238266.1| peptide deformylase [Pseudomonas stutzeri RCH2]
gi|431823519|gb|AGA84636.1| peptide deformylase [Pseudomonas stutzeri RCH2]
Length = 168
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D L+++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDELRQLIDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++R+ AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E++AEGLLA+C+QHE DHLNGK+F++YLS+ K++RI KK K
Sbjct: 121 ELVAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEK 162
>gi|422620759|ref|ZP_16689434.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|422628602|ref|ZP_16693810.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|422665996|ref|ZP_16725866.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|424065254|ref|ZP_17802734.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424069923|ref|ZP_17807365.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440719870|ref|ZP_20900293.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|440728125|ref|ZP_20908344.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|443640746|ref|ZP_21124596.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
gi|330901114|gb|EGH32533.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|330937252|gb|EGH41267.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330976422|gb|EGH76478.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|408001647|gb|EKG41942.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|408003560|gb|EKG43731.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|440362232|gb|ELP99432.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|440367110|gb|ELQ04179.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|443280763|gb|ELS39768.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
Length = 168
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 124/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ V INP+I + E Y EGCLS+PG + + R +++RV AL+ +GK +
Sbjct: 61 MDLSEDRSEPMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E++AEGLLAIC+QHE DHLNGK+F++YLSN K++RI KK K K
Sbjct: 121 ELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 165
>gi|192358847|ref|YP_001984035.1| peptide deformylase [Cellvibrio japonicus Ueda107]
gi|238692437|sp|B3PGY7.1|DEF_CELJU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|190685012|gb|ACE82690.1| peptide deformylase [Cellvibrio japonicus Ueda107]
Length = 169
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 124/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ +A+P+T+ D ++++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MALLPILEFPDPRLRTVAKPVTQVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q VFINP+I +E Y+EGCLS+PG + ++R IRV AL+ G F
Sbjct: 61 IDVSEDKSQPLVFINPEIEVLDEELSQYDEGCLSVPGFYETVERPGHIRVKALDRAGNAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLA+C+QHE+DHLNGK+F++++S FK+ RI K K K
Sbjct: 121 ELQPQGLLAVCIQHELDHLNGKLFVDHISPFKRSRIRSKLEKKHK 165
>gi|409396477|ref|ZP_11247463.1| peptide deformylase [Pseudomonas sp. Chol1]
gi|409118958|gb|EKM95348.1| peptide deformylase [Pseudomonas sp. Chol1]
Length = 168
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDGIRQLIDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ ++E Y EGCLS+PG + + R +++RV AL+ +G+ +
Sbjct: 61 MDLSEDKSEPRVFINPEFEALTEEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EIIAEGLLA+C+QHE DHLNGK+F++YLS+ K++RI KK K
Sbjct: 121 EIIAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEK 162
>gi|254784305|ref|YP_003071733.1| peptide deformylase [Teredinibacter turnerae T7901]
gi|259645186|sp|C5BKQ0.1|DEF_TERTT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|237684580|gb|ACR11844.1| peptide deformylase [Teredinibacter turnerae T7901]
Length = 168
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ +A+P+ + D ++ II +M ETMY A GIGLAA+QV++H+Q+++
Sbjct: 1 MALLPILEFPDARLRTVAKPVEQVDERVRAIIDDMFETMYDAPGIGLAATQVNVHEQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N+++ VFINP+I + Y EGCLS+PG + ++ R + +RV ALN +G+ F
Sbjct: 61 IDISENHDEPLVFINPRIDVLDETLFDYEEGCLSVPGFYEEVTRPRHVRVTALNRDGEEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ EGLLA+C+QHEIDHL GK+F++Y+SN K++RI KK K K+
Sbjct: 121 VLEPEGLLAVCIQHEIDHLKGKLFVDYVSNIKRQRIRKKLEKQHKE 166
>gi|421615478|ref|ZP_16056502.1| peptide deformylase [Pseudomonas stutzeri KOS6]
gi|409782551|gb|EKN62106.1| peptide deformylase [Pseudomonas stutzeri KOS6]
Length = 168
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDDIRQLIDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++R+ AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E++AEGLLA+C+QHE DHLNGK+F++YLS+ K++RI KK K
Sbjct: 121 ELVAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEK 162
>gi|398878984|ref|ZP_10634088.1| peptide deformylase [Pseudomonas sp. GM67]
gi|398883314|ref|ZP_10638271.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398196976|gb|EJM83966.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398197893|gb|EJM84865.1| peptide deformylase [Pseudomonas sp. GM67]
Length = 168
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILDILEFPDSRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINP+ + E + Y EGCLS+PG + + R ++++V AL+ +G+ +
Sbjct: 61 MDLSEDRTEPRVFINPEFEPLTDEMEQYQEGCLSVPGFYENVDRPQKVKVKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLSN K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162
>gi|71905663|ref|YP_283250.1| peptide deformylase [Dechloromonas aromatica RCB]
gi|71845284|gb|AAZ44780.1| peptide deformylase [Dechloromonas aromatica RCB]
Length = 167
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 124/165 (75%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RLKK+A P+ + D +++K++ +M ETMY A GIGLAA+QVD+HK++++
Sbjct: 1 MALLPILRFPDPRLKKVALPVAKVDDSIRKLVADMAETMYEAPGIGLAATQVDVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++LQ FINP ++ + Q EGCLS+PGI++K++R++ + V L+++G
Sbjct: 61 IDVSEDKSELQAFINP-VLSRCEGSQTGEEGCLSVPGIYDKVERAESVVVTYLDLDGNQQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA+CLQHE+DHLNG +F+++LS K+ RI K K +
Sbjct: 120 TLAADGLLAVCLQHELDHLNGTVFVDHLSLLKQTRIRNKLAKQAR 164
>gi|393775076|ref|ZP_10363390.1| peptide deformylase [Ralstonia sp. PBA]
gi|392717653|gb|EIZ05213.1| peptide deformylase [Ralstonia sp. PBA]
Length = 167
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 122/163 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL +A+P+ D ++ +I +M ETMY A GIGLAA+QVD+H+Q+++
Sbjct: 1 MAKLDILEYPDPRLYTVAKPVKVVDDRIRTLIADMAETMYAAPGIGLAATQVDVHEQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +QL+VFINP+++W S+E + EGCLS+P ++K++R+ R++V ALN G+ F
Sbjct: 61 MDLSESKDQLRVFINPELVWSSEEHLLGEEGCLSVPDYYDKVERAARVKVKALNEHGEPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+ LLA+C+QHE+DHL G++F++YLS K+ R+ K K
Sbjct: 121 ELEADELLAVCIQHEMDHLAGRVFVQYLSPLKQNRVRSKLKKR 163
>gi|146305096|ref|YP_001185561.1| peptide deformylase [Pseudomonas mendocina ymp]
gi|421502977|ref|ZP_15949929.1| peptide deformylase [Pseudomonas mendocina DLHK]
gi|166198520|sp|A4XNB3.1|DEF_PSEMY RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145573297|gb|ABP82829.1| peptide deformylase [Pseudomonas mendocina ymp]
gi|400346434|gb|EJO94792.1| peptide deformylase [Pseudomonas mendocina DLHK]
Length = 168
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++++ AL+ +G+ F
Sbjct: 61 MDLSEDKSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLSN K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162
>gi|398989735|ref|ZP_10692968.1| peptide deformylase [Pseudomonas sp. GM24]
gi|399012774|ref|ZP_10715092.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398115018|gb|EJM04813.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398146961|gb|EJM35685.1| peptide deformylase [Pseudomonas sp. GM24]
Length = 168
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINP+ ++E Y EGCLS+PG + + R +++R+ AL+ +GK +
Sbjct: 61 MDLSEDRTEPRVFINPEFESLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166
>gi|303256332|ref|ZP_07342348.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
gi|330999027|ref|ZP_08322752.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
gi|302861061|gb|EFL84136.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
gi|329575769|gb|EGG57295.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
Length = 175
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 119/162 (73%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL A +TEFD LK++ +M ETMY A G+GLAA+QVD H +L++
Sbjct: 1 MALLPILKYPDPRLATKAAVVTEFDDKLKQLAADMAETMYKAPGVGLAATQVDRHIRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI++ N L+V +NP+++ S+E + + EGCLSLPGI++K+ R +++V A ++EG F
Sbjct: 61 IDITEEKNDLKVLVNPELVESSEETKPWEEGCLSLPGIYDKVTRPAKVKVKAQDLEGNFF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLA+C+QHE+DHL G +F+++LS KK+RI K K
Sbjct: 121 ELECDGLLAVCVQHEMDHLEGTVFVDHLSMLKKQRIRHKIRK 162
>gi|452750253|ref|ZP_21950005.1| peptide deformylase [Pseudomonas stutzeri NF13]
gi|452005903|gb|EMD98183.1| peptide deformylase [Pseudomonas stutzeri NF13]
Length = 168
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDGIRQLIDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++R+ AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E++AEGLLA+C+QHE DHLNGK+F++YLS+ K++RI KK K
Sbjct: 121 ELVAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEK 162
>gi|392419120|ref|YP_006455724.1| peptide deformylase [Pseudomonas stutzeri CCUG 29243]
gi|390981308|gb|AFM31301.1| peptide deformylase [Pseudomonas stutzeri CCUG 29243]
Length = 168
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDEIRQLIDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++R+ AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E++AEGLLA+C+QHE DHLNGK+F++YLS+ K++RI KK K
Sbjct: 121 EMVAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEK 162
>gi|398853371|ref|ZP_10609974.1| peptide deformylase [Pseudomonas sp. GM80]
gi|398239902|gb|EJN25600.1| peptide deformylase [Pseudomonas sp. GM80]
Length = 168
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 124/163 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILDILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINP+ ++E + Y EGCLS+PG + + R +++++ AL+ +GK +
Sbjct: 61 MDLSEDRTEPRVFINPEFESLTEEMEQYQEGCLSVPGFYENVDRPQKVKIKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQ 163
>gi|224826194|ref|ZP_03699297.1| peptide deformylase [Pseudogulbenkiania ferrooxidans 2002]
gi|224601831|gb|EEG08011.1| peptide deformylase [Pseudogulbenkiania ferrooxidans 2002]
Length = 167
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A P+ D ++++I +M ETMY GIGLAA+QV++H+++++
Sbjct: 1 MALLTILHYPDERLHKVARPVGAVDERIRQLIDDMAETMYECNGIGLAATQVNVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + L F+NP+I+ + +Y EGCLS+PGI++K+ RS+ +RV ALN G+ F
Sbjct: 61 IDVSEEKSALTAFVNPEIV-ERRGDTVYEEGCLSVPGIYDKVHRSEWVRVRALNRNGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
EI +GLLAIC+QHEIDHL+GK+F++YLS K+ RI K K K
Sbjct: 120 EIETDGLLAICIQHEIDHLDGKVFVDYLSQLKQSRIKAKMKKREK 164
>gi|398807803|ref|ZP_10566675.1| peptide deformylase [Variovorax sp. CF313]
gi|398088837|gb|EJL79385.1| peptide deformylase [Variovorax sp. CF313]
Length = 172
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 115/158 (72%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+ YPD RL +A+P+ D +K ++ +M ETMY A GIGLAA+QVD+H++++++DIS+
Sbjct: 6 ILSYPDKRLHTVAKPVQGVDARVKALVADMLETMYDASGIGLAATQVDVHERVVVIDISE 65
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
NQ V INP+IIW S EK + EGCLS+PGI++ + RS ++V AL+ G+ I A+
Sbjct: 66 ERNQPIVLINPEIIWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGESRTIEAD 125
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
GLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 126 GLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQ 163
>gi|423092858|ref|ZP_17080654.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
gi|397882446|gb|EJK98933.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
Length = 168
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E + Y EGCLS+PG + + R +++R+ AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFETLTDEMEQYQEGCLSVPGFYENVDRPQKVRIKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 EMIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|161501956|ref|YP_257174.2| peptide deformylase [Pseudomonas protegens Pf-5]
gi|341579779|gb|AAY95440.2| peptide deformylase [Pseudomonas protegens Pf-5]
Length = 168
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +R+++ AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166
>gi|121606766|ref|YP_984095.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
gi|120595735|gb|ABM39174.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
Length = 173
Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 120/165 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L I+ YPD RL +A+P+ FD L+++ M TMY A GIGLAA+QVD+H++L++
Sbjct: 1 MTPLTILRYPDPRLHTVAKPVAAFDARLRQLADAMFHTMYAAEGIGLAATQVDVHERLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ V INP+I+W S E +I +EGCLS+PGI++ ++R+ ++V AL++ G+
Sbjct: 61 IDVSEGRNQPLVLINPEIVWASAETRIGDEGCLSVPGIYDGVERALAVKVAALDLNGQKQ 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
AEG+LA+C+QHE+DHL GK+F+EYLS K+ RI K +K K
Sbjct: 121 LHEAEGMLAVCIQHEMDHLIGKVFVEYLSPLKRNRIKTKLIKQKK 165
>gi|330500987|ref|YP_004377856.1| peptide deformylase [Pseudomonas mendocina NK-01]
gi|328915273|gb|AEB56104.1| peptide deformylase [Pseudomonas mendocina NK-01]
Length = 168
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++++ AL+ +G+ +
Sbjct: 61 MDLSEDKSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+IAEGLLA+C+QHE DHLNGK+F++YLSN K++RI KK K ++
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQ 166
>gi|399007439|ref|ZP_10709948.1| peptide deformylase [Pseudomonas sp. GM17]
gi|398120202|gb|EJM09870.1| peptide deformylase [Pseudomonas sp. GM17]
Length = 168
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +R+++ AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFEALTDEMGQYQEGCLSVPGFYENVDRPQRVKIRALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166
>gi|30249917|ref|NP_841987.1| peptide deformylase [Nitrosomonas europaea ATCC 19718]
gi|39931083|sp|Q82TC8.1|DEF2_NITEU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|30180954|emb|CAD85881.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
Length = 185
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 119/166 (71%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL KIA + ++ ++ NM ETMY A GIGLAA+QVD+H+++++
Sbjct: 18 MAILNILRYPDERLHKIATEVPSITREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIV 77
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++L V INP+II S + EGCLS+PGIF+K+ R++ + V A I+GK F
Sbjct: 78 IDVSETRDELLVLINPEIIASSGNAE-TQEGCLSVPGIFDKVTRAEEVTVRATGIDGKSF 136
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A GLLA+C+QHE+DHL GK+F+EYLS FK+ RI+ K K ++
Sbjct: 137 EMDASGLLAVCIQHEMDHLMGKVFVEYLSPFKQSRILSKLKKQARR 182
>gi|398997464|ref|ZP_10700289.1| peptide deformylase [Pseudomonas sp. GM21]
gi|398124106|gb|EJM13629.1| peptide deformylase [Pseudomonas sp. GM21]
Length = 168
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E + Y EGCLS+PG + + R ++++V AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFETLTDEMEQYQEGCLSVPGFYENVDRPQKVKVKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS+ K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEK 162
>gi|399518641|ref|ZP_10759595.1| peptide deformylase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399113135|emb|CCH36153.1| peptide deformylase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 168
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++++ AL+ +G+ +
Sbjct: 61 MDLSEDKSEPRVFINPEFEPLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+IAEGLLA+C+QHE DHLNGK+F++YLSN K++RI KK K ++
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQ 166
>gi|359781166|ref|ZP_09284391.1| peptide deformylase [Pseudomonas psychrotolerans L19]
gi|359371226|gb|EHK71792.1| peptide deformylase [Pseudomonas psychrotolerans L19]
Length = 168
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 122/163 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+PI D L++ I +M ETMY A GIGLAA+QV++H++L++
Sbjct: 1 MAILDILEFPDPRLRTVAKPIDTVDDALRQTIDDMFETMYEAPGIGLAATQVNVHRRLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP+ ++E Y EGCLS+PG + K+ R +R+RV AL+ +GK F
Sbjct: 61 IDVSEDKSEPLVFINPEAEPLTQELGEYQEGCLSIPGFYEKVCRPERVRVKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ +GLLA+C+QHEIDHL+GK+F++YLS K++RI KK K
Sbjct: 121 ELECDGLLAVCIQHEIDHLDGKLFVDYLSPLKRDRIKKKLEKQ 163
>gi|257456003|ref|ZP_05621212.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
gi|257446592|gb|EEV21626.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
Length = 176
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 120/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MTL I+ YPD RL+ +A+P+T FD LK +I +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MTLRTILNYPDPRLRTLAKPVTHFDDELKTLIDDMFETMYAAKGIGLAATQVDEHIQLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q +VFINP + + E Y EGCLS+P ++K+ R K +++ AL+ +G F
Sbjct: 61 MDLSEDGSQPRVFINPIVTPLADELYSYEEGCLSVPEYYDKVDRPKHVKIEALDAQGNPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+GLLA+C+QHEIDHLNGKIF++YLS K++R K K +K+
Sbjct: 121 VEEAQGLLAVCIQHEIDHLNGKIFVDYLSKLKQDRARDKVRKVVKQ 166
>gi|333898252|ref|YP_004472125.1| peptide deformylase [Pseudomonas fulva 12-X]
gi|333113517|gb|AEF20031.1| Peptide deformylase [Pseudomonas fulva 12-X]
Length = 168
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 123/163 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D L+++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDALRQLIDDMFETMYDAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP+ + E Y EGCLS+PG + + R ++++++AL+ +GK F
Sbjct: 61 MDLSEDKSEPLVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKINALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 EMIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQ 163
>gi|425896692|ref|ZP_18873283.1| peptide deformylase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397882103|gb|EJK98591.1| peptide deformylase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 168
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +R+++ AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFEALTDEMGQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166
>gi|114330413|ref|YP_746635.1| peptide deformylase [Nitrosomonas eutropha C91]
gi|114307427|gb|ABI58670.1| peptide deformylase [Nitrosomonas eutropha C91]
Length = 168
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 119/166 (71%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL KIA + ++ + NM ETMY A G+GLAA+QVD+HK++++
Sbjct: 1 MAILNILRYPDERLHKIAAVVPSVTREIRILASNMAETMYAAAGVGLAATQVDVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ ++L V INP+II S K EGCLS+PGIF+K+ R+++I V A +I+GK F
Sbjct: 61 IDTSETRDELLVLINPEIIA-STGKSETQEGCLSVPGIFDKVSRAEQITVRATDIDGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A GLLA+C+QHE+DHL GK+F+EYLS FK+ RI+ K K +K
Sbjct: 120 EMDATGLLAVCIQHEMDHLIGKVFVEYLSPFKQSRILSKLKKQARK 165
>gi|152988653|ref|YP_001345416.1| peptide deformylase [Pseudomonas aeruginosa PA7]
gi|150963811|gb|ABR85836.1| peptide deformylase [Pseudomonas aeruginosa PA7]
Length = 168
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ ++E Y EGCLS+PG + + R +++R+ AL+ +GK F
Sbjct: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E +AEGLLA+C+QHE DHLNG++F++YLS K++RI KK K ++
Sbjct: 121 EEVAEGLLAVCIQHECDHLNGRLFVDYLSTLKRDRIRKKLEKQHRQ 166
>gi|77456245|ref|YP_345750.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398976375|ref|ZP_10686281.1| peptide deformylase [Pseudomonas sp. GM25]
gi|77380248|gb|ABA71761.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398139211|gb|EJM28212.1| peptide deformylase [Pseudomonas sp. GM25]
Length = 168
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 123/163 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINP+ + E + Y EGCLS+PG + + R +++++ AL+ +GK +
Sbjct: 61 MDLSEDRTEPRVFINPEFESLTDEMEQYQEGCLSVPGFYENVDRPQKVKIKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQ 163
>gi|319796457|ref|YP_004158097.1| peptide deformylase [Variovorax paradoxus EPS]
gi|315598920|gb|ADU39986.1| peptide deformylase [Variovorax paradoxus EPS]
Length = 172
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 115/158 (72%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+ YPD RL +A+P+ D +K ++ +M ETMY A GIGLAA+Q+D+H++L+++D+S+
Sbjct: 6 ILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDAEGIGLAATQIDVHERLVVIDVSE 65
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N+ V INP+I W S EK + EGCLS+PGI++ + RS ++V AL+ G+M I A+
Sbjct: 66 ERNKPIVLINPEITWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGEMRTIEAD 125
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
GLLA+C+QHE+DHL GK+F+EYLS K+ RI K LK
Sbjct: 126 GLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQ 163
>gi|395800088|ref|ZP_10479367.1| peptide deformylase [Pseudomonas sp. Ag1]
gi|421140895|ref|ZP_15600891.1| peptide deformylase [Pseudomonas fluorescens BBc6R8]
gi|395335930|gb|EJF67792.1| peptide deformylase [Pseudomonas sp. Ag1]
gi|404508097|gb|EKA22071.1| peptide deformylase [Pseudomonas fluorescens BBc6R8]
Length = 168
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 121/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDAKVRQLVDDMFETMYEAPGIGLAATQVDVHQRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP+ + E Y EGCLS+P + + R +R+++ AL+ +GK F
Sbjct: 61 MDLSEDRSEPLVFINPEFETLTDEMGQYQEGCLSVPDFYENVDRPQRVKIKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 EMIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|146280418|ref|YP_001170571.1| peptide deformylase [Pseudomonas stutzeri A1501]
gi|339492105|ref|YP_004712398.1| peptide deformylase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|386018662|ref|YP_005936686.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
gi|158514117|sp|A4VFH8.1|DEF_PSEU5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145568623|gb|ABP77729.1| polypeptide deformylase [Pseudomonas stutzeri A1501]
gi|327478634|gb|AEA81944.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
gi|338799477|gb|AEJ03309.1| peptide deformylase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 168
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + + Y EGCLS+PG + + R +++R+ AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPEFEPLTDQMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS+ K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEK 162
>gi|347538123|ref|YP_004845547.1| peptide deformylase [Pseudogulbenkiania sp. NH8B]
gi|345641300|dbj|BAK75133.1| peptide deformylase [Pseudogulbenkiania sp. NH8B]
Length = 167
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL K+A P+ D ++++I +M ETMY GIGLAA+QV++H+++++
Sbjct: 1 MALLTILHYPDERLHKVARPVGAVDERIRQLIDDMAETMYECNGIGLAATQVNVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + L F+NP+I+ + +Y EGCLS+PGI++K+ RS+ +RV AL+ G+ F
Sbjct: 61 IDVSEEKSALTAFVNPEIV-ERRGDTVYEEGCLSVPGIYDKVHRSEWVRVRALDRNGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
EI +GLLAIC+QHEIDHL+GK+F++YLS K+ RI K K K
Sbjct: 120 EIETDGLLAICIQHEIDHLDGKVFVDYLSQLKQSRIKAKMKKREK 164
>gi|88705378|ref|ZP_01103089.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
gi|88700468|gb|EAQ97576.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
Length = 168
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 116/162 (71%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+ D +L+ +I NM ETMY A GIGLAA+QV++HK+LL+
Sbjct: 1 MAVLDILEFPDPRLRTVAKPVESVDDDLRALIDNMIETMYEASGIGLAATQVNVHKRLLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
LDIS+N +Q VFINP++ Y+EGCLS+PG + ++ R +++RV AL +G+ F
Sbjct: 61 LDISENRDQPMVFINPEVTVLDDTLGSYDEGCLSVPGFYEEVNRPRKVRVEALGRDGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+GL AICLQHEIDHL+GK+F++Y+S K+ RI K K
Sbjct: 121 SQELDGLAAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEK 162
>gi|389680439|ref|ZP_10171789.1| peptide deformylase [Pseudomonas chlororaphis O6]
gi|388555544|gb|EIM18787.1| peptide deformylase [Pseudomonas chlororaphis O6]
Length = 168
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 125/166 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +R+++ AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFEPLTDEMGQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166
>gi|167950832|ref|ZP_02537906.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
gi|345863829|ref|ZP_08816037.1| peptide deformylase [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345878650|ref|ZP_08830354.1| peptide deformylase [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344224327|gb|EGV50726.1| peptide deformylase [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|345125155|gb|EGW55027.1| peptide deformylase [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 194
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 125/165 (75%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+++PD RL+ A+P+++ D ++K++ +M ETMY A GIGLAA+QV++ KQ+++
Sbjct: 19 MAILDILHFPDSRLRNKAKPVSQVDDAIRKLVDDMFETMYEAPGIGLAATQVNVAKQIIV 78
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ INP+I+ E+++ +EGCLS+PGI+ +KR+ RI V AL+ +G F
Sbjct: 79 IDLSEEKNQPLCLINPEILSKEGEEKM-DEGCLSVPGIYESVKRAARISVRALDRDGAPF 137
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ EGLLA+C+QHEIDHLNGK+F++YLS+ K++RI K+ K +
Sbjct: 138 ELETEGLLAVCIQHEIDHLNGKLFVDYLSSLKRQRIRKRLEKESR 182
>gi|398891391|ref|ZP_10644767.1| peptide deformylase [Pseudomonas sp. GM55]
gi|398187072|gb|EJM74426.1| peptide deformylase [Pseudomonas sp. GM55]
Length = 168
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINPK+ + E Y EGCLS+PG + + R +R++V AL+ +G+ +
Sbjct: 61 MDLSEDRTEPRVFINPKLETLTDEMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAE LLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEDLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|82701528|ref|YP_411094.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
gi|82409593|gb|ABB73702.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
Length = 191
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL IA P+ E ++ ++ +M ETMY A G+GLAA+QVD+HK++++
Sbjct: 25 MALLKILQYPDERLHTIAAPVPEVTDEIRVLVQDMAETMYAAPGVGLAATQVDVHKRVIV 84
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S ++QL V INP+I + E Y EGCLS+PGIF K+ R+ +I V ALN +G+ F
Sbjct: 85 IDVSNTHDQLLVLINPEITTHEGESD-YEEGCLSVPGIFGKVPRAAQITVEALNKDGERF 143
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+GLLA+C+QHE+DHL G++F+EY S K+ RI KF K +K
Sbjct: 144 TLDADGLLAVCIQHEMDHLLGRVFVEYWSRMKQSRIQAKFRKQRRK 189
>gi|388544127|ref|ZP_10147416.1| peptide deformylase [Pseudomonas sp. M47T1]
gi|388277955|gb|EIK97528.1| peptide deformylase [Pseudomonas sp. M47T1]
Length = 168
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + VFINP+ ++E Y EGCLS+PG + + R +R+++ A + +GK +
Sbjct: 61 MDLSEDRSAPMVFINPEFESLTEEMGQYQEGCLSVPGFYENVDRPQRVKIKAQDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLSN K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162
>gi|358013003|ref|ZP_09144813.1| peptide deformylase [Acinetobacter sp. P8-3-8]
Length = 176
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 122/165 (73%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ +PD RL+ IA+P+ ++++ +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MALLNILSFPDPRLRTIAKPVDTVTDEIRQLAADMFETMYEAPGIGLAATQVDQHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q VFINPK+ +++ Y EGCLS+P I++K++R R+++ A+++EG F
Sbjct: 61 IDVSENRDQPMVFINPKVTPLTEQTLPYEEGCLSVPQIYDKVERPSRVKIEAIDLEGNAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLA+C+QHE+DHLNGK+F++YLS K++R +K K ++
Sbjct: 121 ELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVR 165
>gi|407794102|ref|ZP_11141131.1| N-formylmethionyl-tRNA deformylase [Idiomarina xiamenensis 10-D-4]
gi|407213526|gb|EKE83382.1| N-formylmethionyl-tRNA deformylase [Idiomarina xiamenensis 10-D-4]
Length = 172
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 115/164 (70%), Gaps = 3/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ YPD RL+ +AEPI + D L+ I +M ETMY + G+GLAA+QVD+HK+L +
Sbjct: 1 MAKLAVLKYPDERLRTVAEPIAQVDEALRTTIDDMFETMYESQGVGLAATQVDVHKRLFV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNE-GCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
D S++ N+ VFINP+I E NE GCLS PG++ K++R+ ++ V AL+ G+
Sbjct: 61 ADCSEDQNEPLVFINPEIT--ESEGDFTNEEGCLSFPGVYAKVERASKVTVSALDKHGER 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
F AEGLLAIC+QHEIDHLNGK+F++YLS K+ERI KK K
Sbjct: 119 FSKTAEGLLAICIQHEIDHLNGKLFVDYLSPLKRERIRKKLEKE 162
>gi|419952771|ref|ZP_14468918.1| peptide deformylase [Pseudomonas stutzeri TS44]
gi|387970816|gb|EIK55094.1| peptide deformylase [Pseudomonas stutzeri TS44]
Length = 168
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTLAKPVKVVDDGIRQLIDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ ++E Y EGCLS+PG + + R ++++V AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFEALTEELDQYQEGCLSVPGFYENVDRPQKVKVRALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS+ K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEK 162
>gi|407693961|ref|YP_006818749.1| peptide deformylase 1 [Alcanivorax dieselolei B5]
gi|407251299|gb|AFT68406.1| Peptide deformylase 1 [Alcanivorax dieselolei B5]
Length = 168
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 120/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ +A+P+ + D L+K+I +M ETMY A GIGLAA+QV++H++LL+
Sbjct: 1 MAKLEILEFPDPRLRTVAKPVEQVDDALRKLIDDMIETMYEASGIGLAATQVNVHQRLLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q VFINP+I + + Y EGCLS+PG + +++R R+ + AL+ +G F
Sbjct: 61 IDVSEERDQPLVFINPEITPLTGDLAPYEEGCLSVPGFYEQVERPARVMIKALDRDGNPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLA C+QHEIDHL+GK+F++Y+S K++RI KK K
Sbjct: 121 EMEADGLLATCIQHEIDHLDGKLFVDYVSRLKRDRIKKKLQK 162
>gi|402701205|ref|ZP_10849184.1| peptide deformylase [Pseudomonas fragi A22]
Length = 168
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDEVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ V INP++ + E Y EGCLS+PG + + R +R+++ AL+ +GK F
Sbjct: 61 MDLSEDRSEPLVLINPELEMLTDEMGQYQEGCLSVPGYYENVDRPQRVKIKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 EMIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|398900910|ref|ZP_10649897.1| peptide deformylase [Pseudomonas sp. GM50]
gi|398180739|gb|EJM68317.1| peptide deformylase [Pseudomonas sp. GM50]
Length = 168
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILDILEFPDSRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++++ AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFEVLTDEVDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|399003947|ref|ZP_10706592.1| peptide deformylase [Pseudomonas sp. GM18]
gi|398121237|gb|EJM10874.1| peptide deformylase [Pseudomonas sp. GM18]
Length = 168
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILDILEFPDSRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++++ AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFETLTDEMGQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From Pseudomonas
Aeruginosa
gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From Pseudomonas
Aeruginosa
gi|47168958|pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
gi|47168959|pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
Length = 180
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 13 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 72
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ ++E Y EGCLS+PG + + R +++R+ AL+ +G F
Sbjct: 73 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 132
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E +AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 133 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 178
>gi|388565893|ref|ZP_10152373.1| peptide deformylase [Hydrogenophaga sp. PBC]
gi|388266878|gb|EIK92388.1| peptide deformylase [Hydrogenophaga sp. PBC]
Length = 173
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 115/159 (72%)
Query: 4 LPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDI 63
LPI++YPD RL +A+P+ D ++ +I M TMY A GIGLAA+QVD+H++L+++D+
Sbjct: 7 LPILHYPDPRLHTVAKPVAAVDERIRALIPRMLATMYEANGIGLAATQVDVHERLIVIDV 66
Query: 64 SKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEII 123
S++ ++ V INP I W S E + EGCLS+PGI++ ++RS +RV AL+ EG I
Sbjct: 67 SESRDRPMVLINPVIEWASPETRKGEEGCLSVPGIYDGVERSVGVRVRALDGEGVERTIE 126
Query: 124 AEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
AEG+LA+C+QHE+DHL GK+F+EYLS K+ RI K +K
Sbjct: 127 AEGMLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKSKLVK 165
>gi|330806738|ref|YP_004351200.1| peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378948015|ref|YP_005205503.1| hypothetical protein PSF113_0073 [Pseudomonas fluorescens F113]
gi|423694583|ref|ZP_17669073.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
gi|327374846|gb|AEA66196.1| Peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359758029|gb|AEV60108.1| Def [Pseudomonas fluorescens F113]
gi|388004381|gb|EIK65694.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
Length = 168
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++++ AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFETLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|116053739|ref|YP_788174.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|313111460|ref|ZP_07797261.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
gi|355650971|ref|ZP_09056399.1| peptide deformylase [Pseudomonas sp. 2_1_26]
gi|386062991|ref|YP_005978295.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|421177852|ref|ZP_15635497.1| peptide deformylase [Pseudomonas aeruginosa CI27]
gi|115588960|gb|ABJ14975.1| polypeptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|310883763|gb|EFQ42357.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
gi|348031550|dbj|BAK86910.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|354826495|gb|EHF10707.1| peptide deformylase [Pseudomonas sp. 2_1_26]
gi|404528714|gb|EKA38777.1| peptide deformylase [Pseudomonas aeruginosa CI27]
Length = 168
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ ++E Y EGCLS+PG + + R +++R+ AL+ +G F
Sbjct: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E +AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
>gi|304313372|ref|YP_003812970.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1]
gi|301799105|emb|CBL47348.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1]
Length = 170
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ +PD RL+ A+P+T+FD L+K+ +M ETMY A GIGLAA+Q+++H+Q+++
Sbjct: 1 MALLDILEFPDPRLRTQAKPVTQFDAALRKLTEDMLETMYDAPGIGLAATQINVHQQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q VFINP+I EK+ Y EGCLS+PG + R I V ALN +G+ F
Sbjct: 61 MDVSEDKSQPMVFINPQITVVGGEKE-YEEGCLSVPGFHENVVRPDVIHVKALNAQGEAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLL++CLQHE+DHLNG +F++++S K++RI +K K K
Sbjct: 120 ELQADGLLSVCLQHEMDHLNGVLFVDHISRLKRDRIRRKLEKQHK 164
>gi|424920645|ref|ZP_18344006.1| peptide deformylase [Pseudomonas fluorescens R124]
gi|404301805|gb|EJZ55767.1| peptide deformylase [Pseudomonas fluorescens R124]
Length = 215
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 48 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 107
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINP+ + E Y EGCLS+PG + + R +++++ AL+ +G+ +
Sbjct: 108 MDLSEDRTEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPY 167
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 168 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 209
>gi|443474080|ref|ZP_21064101.1| Peptide deformylase [Pseudomonas pseudoalcaligenes KF707]
gi|442905015|gb|ELS29930.1| Peptide deformylase [Pseudomonas pseudoalcaligenes KF707]
Length = 168
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 125/163 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++ +I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDSIRTLIDDMFETMYAAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ ++E Y EGCLS+PG + + R +++++ AL+ +G+ +
Sbjct: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+IAEGLLA+C+QHE DHLNGK+F++YLS+ K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEKQ 163
>gi|398961098|ref|ZP_10678496.1| peptide deformylase [Pseudomonas sp. GM30]
gi|398153049|gb|EJM41556.1| peptide deformylase [Pseudomonas sp. GM30]
Length = 215
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 48 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 107
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINP+ + E Y EGCLS+PG + + R +++++ AL+ +G+ +
Sbjct: 108 MDLSEDRTEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPY 167
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E++AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 168 ELVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 209
>gi|262089743|gb|ACY24837.1| Def peptide deformylase [uncultured organism]
Length = 169
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 120/156 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+TE + ++K+I +M ETMY A G+GLAASQ+++H+++++
Sbjct: 1 MAILEILEFPDPRLRTIAKPVTEVNDRVRKLIDDMFETMYDAPGVGLAASQINVHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q VFINP++ + Y+EGCLS+PG + ++R + I V AL+ +GK F
Sbjct: 61 IDVSEDKSQPMVFINPEVTVLDSDLHEYDEGCLSVPGFYETVERPEHISVTALDRDGKSF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
I EGLLA+C+QHE+DHLNGK+F++Y+S+FK+ RI
Sbjct: 121 TIKPEGLLAVCIQHELDHLNGKLFVDYISSFKRTRI 156
>gi|119503586|ref|ZP_01625669.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
gi|119460648|gb|EAW41740.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
Length = 168
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 120/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA P+T D ++++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAILSILEFPDPRLRTIAVPVTHVDARVQRLTDDMLETMYDAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q Q+FINP + + Y+EGCLS+PG + I+R +RIRV A + +G++F
Sbjct: 61 IDISENKDQPQIFINPVVEALDQTLGEYDEGCLSVPGFYETIRRPERIRVTAKDRDGELF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+GLLAICLQHEIDHL GK+F++YLS K++RI K K ++
Sbjct: 121 SRELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRGKLEKAQRQ 166
>gi|398926156|ref|ZP_10662317.1| peptide deformylase [Pseudomonas sp. GM48]
gi|398171193|gb|EJM59104.1| peptide deformylase [Pseudomonas sp. GM48]
Length = 168
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINP++ + E Y EGCLS+PG + + R +R++V AL+ +G+ +
Sbjct: 61 MDLSEDRTEPRVFINPELEPLTDEMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAE LLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEDLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|410692111|ref|YP_003622732.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
3As]
gi|294338535|emb|CAZ86864.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
3As]
Length = 168
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 118/166 (71%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II YPD RL +A+P+ D ++ ++ M ETMY + G+GLAA+QVD+H+++++
Sbjct: 1 MEQLTIIQYPDPRLYTVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ NQ INP+I+ +S E + + EGCLS+PGI++K+ R +RV AL+ +G+ F
Sbjct: 61 MDTSEERNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GL A+C+QHE+DHL GK+F++YLS K+ RI K LK ++
Sbjct: 121 EMDADGLTAVCIQHEMDHLLGKVFVDYLSPLKRNRIKTKMLKRQRQ 166
>gi|398947746|ref|ZP_10672382.1| peptide deformylase [Pseudomonas sp. GM33]
gi|426406931|ref|YP_007027030.1| peptide deformylase [Pseudomonas sp. UW4]
gi|169123281|gb|ACA47112.1| peptide deformylase [Pseudomonas putida]
gi|398161658|gb|EJM49885.1| peptide deformylase [Pseudomonas sp. GM33]
gi|426265148|gb|AFY17225.1| peptide deformylase [Pseudomonas sp. UW4]
Length = 168
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINP++ + + Y EGCLS+PG + + R +R++V AL+ +GK +
Sbjct: 61 MDLSEDRTEPRVFINPELEPLTDDMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAE LLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEDLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|408374191|ref|ZP_11171880.1| peptide deformylase [Alcanivorax hongdengensis A-11-3]
gi|407765852|gb|EKF74300.1| peptide deformylase [Alcanivorax hongdengensis A-11-3]
Length = 168
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 120/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ +A+P+ + D L+K+I +M ETMY A GIGLAASQV++H +L++
Sbjct: 1 MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMFETMYDAPGIGLAASQVNVHIRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+I + + Y EGCLS+PG + K++R R+R+ AL+ +G F
Sbjct: 61 MDLSEDKSEPRVFINPEITPLTDDTAPYEEGCLSVPGFYEKVERPARVRIKALDRDGNTF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+ LLA C+QHEIDHL+GK+F++Y+S K++RI KK K
Sbjct: 121 EEEADELLATCIQHEIDHLDGKLFVDYVSRLKRDRIRKKLEK 162
>gi|398868370|ref|ZP_10623769.1| peptide deformylase [Pseudomonas sp. GM78]
gi|398233340|gb|EJN19274.1| peptide deformylase [Pseudomonas sp. GM78]
Length = 168
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+ +T D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKTVTVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINP+ + E + Y EGCLS+PG + + R ++++V AL+ +G+ +
Sbjct: 61 MDLSEDRTEPRVFINPEFEPLTDEMEQYQEGCLSVPGFYENVDRPQKVKVKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|398828003|ref|ZP_10586205.1| peptide deformylase [Phyllobacterium sp. YR531]
gi|398218721|gb|EJN05223.1| peptide deformylase [Phyllobacterium sp. YR531]
Length = 176
Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 120/164 (73%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P++ PD L++I++P+ FD +L+K +M +TMY A GIGLAA Q+ Q+L+
Sbjct: 1 MSIKPLVILPDPLLRQISKPVESFDADLRKFSADMLDTMYDAPGIGLAAIQIGTPLQMLV 60
Query: 61 LDISKNNNQ--LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K + QV+INPK++W S E+ +Y EGCLS+P + +++R K++RV L+I+GK
Sbjct: 61 IDLAKEDEPKAPQVYINPKVLWSSDERNVYEEGCLSIPDYYAEVERPKQVRVSYLDIDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E ++KKF K
Sbjct: 121 AQEVDADGLLATCLQHEIDHLNGVLFIDYISRLKREMVVKKFKK 164
>gi|226942060|ref|YP_002797134.1| Def [Laribacter hongkongensis HLHK9]
gi|226716987|gb|ACO76125.1| Def [Laribacter hongkongensis HLHK9]
Length = 167
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL +A P+ D L+++I +M ETMY A GIGLAA+Q+D H++L++
Sbjct: 1 MALLNILHYPDERLHTVARPVDVVDDALRRLIDDMAETMYAAHGIGLAATQIDYHRRLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ L V INP I + E +Y EGCLS+PGI++K+ R++ + V AL+ G+ F
Sbjct: 61 IDLSEEHDGLLVLINPVITRKAGET-VYEEGCLSVPGIYDKVTRAETVTVEALDRNGQPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ AEGLLAIC+QHEIDHL+GK+F+E+LS K+ RI +K K ++
Sbjct: 120 SLDAEGLLAICIQHEIDHLDGKVFVEHLSQMKQSRIKQKLKKRERQ 165
>gi|49081366|gb|AAT50122.1| PA0019, partial [synthetic construct]
Length = 169
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ +++ Y EGCLS+PG + + R +++R+ AL+ +G F
Sbjct: 61 MDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E +AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
>gi|398869699|ref|ZP_10625057.1| peptide deformylase [Pseudomonas sp. GM74]
gi|398210548|gb|EJM97192.1| peptide deformylase [Pseudomonas sp. GM74]
Length = 168
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +R++V AL+ +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFEPLTDEMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAE LLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEDLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|15595217|ref|NP_248709.1| peptide deformylase [Pseudomonas aeruginosa PAO1]
gi|107099012|ref|ZP_01362930.1| hypothetical protein PaerPA_01000019 [Pseudomonas aeruginosa PACS2]
gi|218888765|ref|YP_002437629.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
gi|254237739|ref|ZP_04931062.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
gi|254243131|ref|ZP_04936453.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
gi|296386491|ref|ZP_06875990.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
gi|386056090|ref|YP_005972612.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|392981429|ref|YP_006480016.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|416866946|ref|ZP_11915972.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|416887710|ref|ZP_11922769.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|418587865|ref|ZP_13151886.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|418591628|ref|ZP_13155524.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|419757390|ref|ZP_14283733.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|420141067|ref|ZP_14648783.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|421153046|ref|ZP_15612608.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
gi|421156964|ref|ZP_15616383.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|421167539|ref|ZP_15625722.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
gi|421183715|ref|ZP_15641164.1| peptide deformylase [Pseudomonas aeruginosa E2]
gi|421514625|ref|ZP_15961311.1| peptide deformylase [Pseudomonas aeruginosa PAO579]
gi|424943600|ref|ZP_18359363.1| polypeptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|451983637|ref|ZP_21931913.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
gi|17432949|sp|Q9I7A8.1|DEF_PSEAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase [Pseudomonas aeruginosa PAO1]
gi|126169670|gb|EAZ55181.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
gi|126196509|gb|EAZ60572.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
gi|218768988|emb|CAW24746.1| polypeptide deformylase [Pseudomonas aeruginosa LESB58]
gi|334833122|gb|EGM12290.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|334833891|gb|EGM12916.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|346060046|dbj|GAA19929.1| polypeptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|347302396|gb|AEO72510.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|375041377|gb|EHS34078.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|375049687|gb|EHS42178.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|384396189|gb|EIE42609.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|392316934|gb|AFM62314.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|403246194|gb|EJY59934.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|404348353|gb|EJZ74690.1| peptide deformylase [Pseudomonas aeruginosa PAO579]
gi|404524330|gb|EKA34679.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
gi|404534227|gb|EKA43980.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
gi|404539809|gb|EKA49256.1| peptide deformylase [Pseudomonas aeruginosa E2]
gi|404551100|gb|EKA59787.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|451758583|emb|CCQ84436.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
gi|453044695|gb|EME92417.1| peptide deformylase [Pseudomonas aeruginosa PA21_ST175]
Length = 168
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ +++ Y EGCLS+PG + + R +++R+ AL+ +G F
Sbjct: 61 MDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E +AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
>gi|430759746|ref|YP_007215603.1| Peptide deformylase [Thioalkalivibrio nitratireducens DSM 14787]
gi|430009370|gb|AGA32122.1| Peptide deformylase [Thioalkalivibrio nitratireducens DSM 14787]
Length = 180
Score = 178 bits (451), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 124/166 (74%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ A+P+ E D ++++++ +M ETMY A GIGLAA+Q+++ K++L+
Sbjct: 1 MALREILCFPDPRLRLRADPVAEVDDSIRELVDDMFETMYAAPGIGLAATQINVQKRILV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
D+S++ N+ INP+I+ E+++ +EGCLS+PG + +++R++RIRV ALN +G+ F
Sbjct: 61 ADVSEDQNEPYCLINPEILSRDGEEEM-DEGCLSVPGFYERVRRAERIRVRALNRDGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ GLLA+C+QHEIDHL+GK+F++Y+SN K+ RI KK K +
Sbjct: 120 ELETGGLLAVCIQHEIDHLDGKLFVDYISNLKRTRIRKKLEKQAAR 165
>gi|395495802|ref|ZP_10427381.1| peptide deformylase [Pseudomonas sp. PAMC 25886]
Length = 168
Score = 178 bits (451), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 121/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++H+++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDAKVRQLVDDMFETMYEAPGIGLAATQVNVHQRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP+ + E Y EGCLS+P + + R +R+++ AL+ +GK F
Sbjct: 61 MDLSEDRSEPLVFINPEFETLTDEMGQYQEGCLSVPDFYENVDRPQRVKIKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 EMIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|398920310|ref|ZP_10659227.1| peptide deformylase [Pseudomonas sp. GM49]
gi|398168319|gb|EJM56340.1| peptide deformylase [Pseudomonas sp. GM49]
Length = 168
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 121/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINP+ + E Y EGCLS+PG + + R +R++V AL+ +G+ +
Sbjct: 61 MDLSEDRTEPRVFINPEFEPLTDEMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAE LLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEDLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|34809567|pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
gi|34809568|pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 171
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ +++ Y EGCLS+PG + + R +++R+ AL+ +G F
Sbjct: 61 MDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E +AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
>gi|372487500|ref|YP_005027065.1| peptide deformylase [Dechlorosoma suillum PS]
gi|359354053|gb|AEV25224.1| peptide deformylase [Dechlorosoma suillum PS]
Length = 167
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 120/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RLKK+A P+ + D ++ + +M ETMY A GIGLAA+QVD+HKQ+++
Sbjct: 1 MALLPILRFPDPRLKKVAVPVEKIDDGIRALARDMAETMYEAPGIGLAATQVDVHKQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++L V INP+ I + Q+ EGCLS+PGI++K++R++ I V L+++GK
Sbjct: 61 IDVSETKDELLVLINPE-ITHRDGLQVGEEGCLSVPGIYDKVERAEHIAVRYLDLDGKAC 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ +GLLA+C+QHE+DHL GK+F+++LS K+ RI K K +
Sbjct: 120 SLETDGLLAVCIQHEMDHLQGKVFVDHLSQLKQGRIKAKLAKQAR 164
>gi|85711005|ref|ZP_01042066.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
gi|85695409|gb|EAQ33346.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
Length = 173
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 116/163 (71%), Gaps = 3/163 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD RL+ +A+PI + D L+ I +M ETMY + G+GLAA+QVD+H++L +
Sbjct: 1 MTKLTVLKYPDERLRTVAQPIEQVDDALRATIDDMFETMYESQGVGLAATQVDVHQRLFV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNE-GCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
D S+N N+ VFINP+I E NE GCLS P +F K++R++ I V AL+ G+
Sbjct: 61 ADCSENQNEPLVFINPEITR--SEGHFTNEEGCLSFPNVFAKVERAESITVQALDKNGER 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
F + AEGLLAIC+QHEIDHL+GK+F++YLS K+ERI KK K
Sbjct: 119 FSMDAEGLLAICVQHEIDHLDGKLFVDYLSPLKRERIRKKLEK 161
>gi|124265476|ref|YP_001019480.1| peptide deformylase [Methylibium petroleiphilum PM1]
gi|124258251|gb|ABM93245.1| peptide deformylase [Methylibium petroleiphilum PM1]
Length = 170
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 120/165 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ E D +++++ +M ETMY A G+GLAA+QVD+H+++++
Sbjct: 1 MPLLDILRYPDPRLHTVAKPVKEVDERVRQLVDDMLETMYDAQGVGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + N+ +V INP+++ S E + +EGCLS+P I++K+ R ++ V AL +G+ +
Sbjct: 61 IDVSDDRNEPRVLINPELLQVSDEMVVGDEGCLSVPQIYDKVPRHAKVTVRALGRDGQAY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ AE LL++C+QHE+DHL GK+F+EYLS K+ RI K LK +
Sbjct: 121 QFDAEELLSVCVQHEMDHLMGKVFVEYLSPLKRNRIKSKMLKKTR 165
>gi|118589715|ref|ZP_01547120.1| peptide deformylase [Stappia aggregata IAM 12614]
gi|118437801|gb|EAV44437.1| peptide deformylase [Labrenzia aggregata IAM 12614]
Length = 202
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 118/167 (70%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ PII PD L+++ P+ D +++K+ +M ETMY A GIGLAASQ+ + +++ +
Sbjct: 31 MTIRPIITIPDPVLREVCAPVATVDDDVRKLADDMLETMYDAPGIGLAASQIGLLQRIFV 90
Query: 61 LDISKNN--NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD++K++ + VFINPKI+W S + +Y EGCLS+P + +++R + V LN EG
Sbjct: 91 LDVAKDDAPKEPMVFINPKIVWSSDDLSVYQEGCLSIPDYYEEVERPAEVTVQFLNREGA 150
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
EI A+GLLA C+QHE+DHLNGK+FI+YLS K++R++KKF K K
Sbjct: 151 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAK 197
>gi|398841293|ref|ZP_10598516.1| peptide deformylase [Pseudomonas sp. GM102]
gi|398862313|ref|ZP_10617923.1| peptide deformylase [Pseudomonas sp. GM79]
gi|398108801|gb|EJL98750.1| peptide deformylase [Pseudomonas sp. GM102]
gi|398230960|gb|EJN16964.1| peptide deformylase [Pseudomonas sp. GM79]
Length = 168
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILDILEFPDSRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++++ A + +G+ +
Sbjct: 61 MDLSEDRSEPRVFINPEFEVLTDEVDQYQEGCLSVPGFYENVDRPQKVKIKAQDRDGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|296134589|ref|YP_003641831.1| peptide deformylase [Thiomonas intermedia K12]
gi|295794711|gb|ADG29501.1| peptide deformylase [Thiomonas intermedia K12]
Length = 168
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 118/166 (71%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL +A+P+ D ++ ++ M ETMY + G+GLAA+QVD+H+++++
Sbjct: 1 MEQLTILQYPDPRLYIVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ NQ INP+I+ +S E + + EGCLS+PGI++K+ R +RV AL+ +G+ F
Sbjct: 61 MDTSEQRNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GL A+C+QHE+DHL GK+F++YLS K+ RI K LK ++
Sbjct: 121 EMDADGLTAVCIQHEMDHLMGKVFVDYLSPLKRNRIKTKMLKRQRQ 166
>gi|404379975|ref|ZP_10985022.1| peptide deformylase [Simonsiella muelleri ATCC 29453]
gi|294482611|gb|EFG30301.1| peptide deformylase [Simonsiella muelleri ATCC 29453]
Length = 171
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD +L +A+P++E + +KK++ +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 1 MALLPILKYPDPKLHTVAKPVSEVNDRIKKLVADMAETMYESRGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQL INP II + + Y EGCLS+PG+++ + R++R+ V L+ +G
Sbjct: 61 IDLSEERNQLITLINP-IITHKDGETTYEEGCLSVPGVYDTVTRAERVTVEFLDADGHAQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
++ A+GLLAIC+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 120 KLDADGLLAICIQHELDHLQGKVFVEYLSPLKQNRIKTKMKK 161
>gi|269214256|ref|ZP_06158455.1| peptide deformylase [Neisseria lactamica ATCC 23970]
gi|269210257|gb|EEZ76712.1| peptide deformylase [Neisseria lactamica ATCC 23970]
Length = 181
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 74
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 75 MDLSENRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 133
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 134 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQSRIKTKLKKRQK 178
>gi|403516814|ref|YP_006650947.1| polypeptide deformylase [Burkholderia pseudomallei BPC006]
gi|403072458|gb|AFR14038.1| polypeptide deformylase [Burkholderia pseudomallei BPC006]
Length = 144
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 111/139 (79%)
Query: 24 FDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIWYSK 83
D ++K++ +M ETMY A GIGLAA+QVD+H++++++D+S++ N+L+VFINP+I+W
Sbjct: 1 MDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVIDVSEDKNELRVFINPEIVWTGD 60
Query: 84 EKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKI 143
KQ+Y EGCLS+PG++++++R R+RV AL+ +G+ FE+ EGLLA+C+QHE+DHL G++
Sbjct: 61 GKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPFELDCEGLLAVCIQHEMDHLMGRV 120
Query: 144 FIEYLSNFKKERIIKKFLK 162
F++YLS K+ RI K K
Sbjct: 121 FVQYLSPLKQTRIKTKMKK 139
>gi|253997897|ref|YP_003049960.1| peptide deformylase [Methylovorus glucosetrophus SIP3-4]
gi|313199962|ref|YP_004038620.1| peptide deformylase [Methylovorus sp. MP688]
gi|253984576|gb|ACT49433.1| peptide deformylase [Methylovorus glucosetrophus SIP3-4]
gi|312439278|gb|ADQ83384.1| peptide deformylase [Methylovorus sp. MP688]
Length = 166
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL +A+P+ E + N++++I +M ETMY A GIGLAA+QVD+H+Q+++
Sbjct: 1 MAILDILNYPDPRLYTVAKPVKEVNANIRRLIDDMAETMYAAPGIGLAATQVDVHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L+VFINPKI Q Y EGCLS+PGI+ + R+ + V AL+ G+ F
Sbjct: 61 MDLSEAKNELRVFINPKITAKCG-AQDYEEGCLSVPGIYENVTRAAEVTVEALDRNGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLA+C+QHE+DHL GK+F++YLS K+ RI K K
Sbjct: 120 VLEAQGLLAVCIQHEMDHLLGKVFVDYLSPLKQNRIKTKLKK 161
>gi|407792151|ref|ZP_11139222.1| peptide deformylase [Gallaecimonas xiamenensis 3-C-1]
gi|407198008|gb|EKE68053.1| peptide deformylase [Gallaecimonas xiamenensis 3-C-1]
Length = 173
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 126/166 (75%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++YPD RL+ +A+P+ E + +++++ +M +TMY GIGLAA+QVD+H Q+++
Sbjct: 1 MAVLNVLHYPDERLRTVAKPVAEVNDAIRQLVSDMFDTMYDENGIGLAATQVDVHLQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ N+ +VFINP+II K + +EGCLS+PG + +++R++ I+V AL+ +G+ F
Sbjct: 61 MDISEERNERRVFINPEIIEKDG-KAMGDEGCLSVPGSYAEVERAEHIKVKALDEQGQEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ AEGLLA+C+QHE+DHL GK+FI+YLS K+ERI KK K ++
Sbjct: 120 ILEAEGLLAVCVQHELDHLKGKLFIDYLSPLKRERIRKKLEKEARQ 165
>gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 167
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 123/165 (74%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
+L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK+++++
Sbjct: 1 AILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVM 60
Query: 62 DISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
D+S++ ++ +VFINP+ +++ Y EGCLS+PG + + R +++R+ AL+ +G FE
Sbjct: 61 DLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFE 120
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 EVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 165
>gi|395650510|ref|ZP_10438360.1| peptide deformylase [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 168
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++H+++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHQRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ ++E Y EGCLS+P + ++R R++++AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPEFEPLTEEMGEYQEGCLSVPEFYENVERPLRVKINALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|336314015|ref|ZP_08568937.1| peptide deformylase [Rheinheimera sp. A13L]
gi|335881954|gb|EGM79831.1| peptide deformylase [Rheinheimera sp. A13L]
Length = 168
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+L +++YPD RL+ +A + E +K++ +M +TMY GIGLAA+QV++HK++++
Sbjct: 1 MTVLTVLHYPDDRLRTVAAAVPEVTAEIKQLTADMLDTMYDENGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N N+ +FINP+II S + + Y EGCLS+P + K++R+ + V A N +G+ F
Sbjct: 61 IDVSENRNEPMIFINPEIIAKSGDTE-YEEGCLSVPQSYAKVERAAAVTVKAQNTKGEWF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ AEGLLAICLQHE+DHL GK+FI+YLS K++RI KK K +
Sbjct: 120 ELQAEGLLAICLQHELDHLVGKLFIDYLSPLKRDRIKKKLEKEAR 164
>gi|163851063|ref|YP_001639106.1| peptide deformylase [Methylobacterium extorquens PA1]
gi|218529893|ref|YP_002420709.1| peptide deformylase [Methylobacterium extorquens CM4]
gi|240138197|ref|YP_002962669.1| peptide deformylase [Methylobacterium extorquens AM1]
gi|254560757|ref|YP_003067852.1| peptide deformylase [Methylobacterium extorquens DM4]
gi|418059748|ref|ZP_12697687.1| Peptide deformylase [Methylobacterium extorquens DSM 13060]
gi|163662668|gb|ABY30035.1| peptide deformylase [Methylobacterium extorquens PA1]
gi|218522196|gb|ACK82781.1| peptide deformylase [Methylobacterium extorquens CM4]
gi|240008166|gb|ACS39392.1| peptide deformylase [Methylobacterium extorquens AM1]
gi|254268035|emb|CAX23906.1| peptide deformylase [Methylobacterium extorquens DM4]
gi|373566690|gb|EHP92680.1| Peptide deformylase [Methylobacterium extorquens DSM 13060]
Length = 171
Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 121/168 (72%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P++ PD +L+ +EP+ ++ + +M ETMY A G+GLAA Q+ + K+++
Sbjct: 1 MTVRPLVILPDAQLRLTSEPVAAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60
Query: 61 LDISKNNNQ--LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D SK+ N V++NP+I+W S+EK++Y+EGCLS+P + +++R R+RV +N++G+
Sbjct: 61 IDTSKDENAKNPTVYLNPEIVWVSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMNLDGQ 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ E A+GLLA CLQHEIDHLNG +FI++LS K++R++KKF K K+
Sbjct: 121 IVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAKR 168
>gi|387812479|ref|YP_005427956.1| peptide deformylase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381337486|emb|CCG93533.1| peptide deformylase [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 167
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 115/157 (73%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+ YPD RL+ IA+P+ E +++ +I +M ETMY A GIGLAA+QVD+HKQ++++D+S+
Sbjct: 5 ILEYPDPRLRTIAKPVEEVTDDIRTLIDDMFETMYDARGIGLAATQVDVHKQIIVMDLSE 64
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
+ + +VFINPK+ E + EGCLS+PG + +KR + R+ A + +GK F + AE
Sbjct: 65 DKTEPRVFINPKVEVLDGELEAMQEGCLSVPGFYEDVKRIEHCRITARDRDGKEFVLEAE 124
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLA+C+QHE+DHLNGK+F++YLS K+ RI KK K
Sbjct: 125 GLLAVCIQHEMDHLNGKLFVDYLSQLKRNRIRKKLEK 161
>gi|56459130|ref|YP_154411.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
gi|81678352|sp|Q5QXI5.1|DEF_IDILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|56178140|gb|AAV80862.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
Length = 174
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 117/164 (71%), Gaps = 3/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + ++ YPD RL+K+A+ I + D N++ +I +M ETMY G+GLAA+QVD+H++L +
Sbjct: 1 MAKMTVLQYPDERLRKVAQKIEKVDDNIRSVIDDMFETMYEEQGVGLAATQVDVHRRLFV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYN-EGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
D S++ N+ VFINP+I E N EGCLS PG++ K++R++RI V AL+ G+
Sbjct: 61 SDCSEDQNEPLVFINPEIT--EAEGHFKNDEGCLSFPGVYAKVERAERITVTALDKNGER 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
F AEGLLAIC+QHEIDHL+GK+F++YLS K+ERI KK K
Sbjct: 119 FSRSAEGLLAICIQHEIDHLDGKLFVDYLSPLKRERIRKKLEKE 162
>gi|350572382|ref|ZP_08940682.1| peptide deformylase [Neisseria wadsworthii 9715]
gi|349790166|gb|EGZ44085.1| peptide deformylase [Neisseria wadsworthii 9715]
Length = 167
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 119/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ E D +K ++ +M ETMY A GIGLAA+QV++H+++++
Sbjct: 1 MALLNILKYPDERLHIVAKPVAEIDNRIKTLVTDMFETMYEAKGIGLAATQVNVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ +VFINP+I E Y EGCLS+PGI++ + R++R+ V AL+ G+ F
Sbjct: 61 MDLSEERNEPRVFINPQITHKDGET-TYEEGCLSVPGIYDTVTRAERVTVEALDENGQKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL GK+FIE+LS K+ RI K K K
Sbjct: 120 TLEADGLLAICIQHELDHLMGKVFIEHLSQLKQNRIKTKLKKRAK 164
>gi|296447194|ref|ZP_06889124.1| peptide deformylase [Methylosinus trichosporium OB3b]
gi|296255253|gb|EFH02350.1| peptide deformylase [Methylosinus trichosporium OB3b]
Length = 179
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + PII PD RL+ ++EP+ D +++++ +M ETMY A G+GLAA QV + K++L+
Sbjct: 1 MAIRPIITLPDPRLRLVSEPVAVIDAEIRQLLDDMLETMYDAPGVGLAAIQVAVAKRILV 60
Query: 61 LDISKNNNQ--LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
D ++ + VFINP+I+W S+E +Y EGCLS+P F +++R R+RV L+ EG
Sbjct: 61 ADATRGDEPKNPMVFINPQIVWASEELGVYQEGCLSVPDYFEEVQRPARVRVSFLDREGA 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA LQHEIDHL G +FI++LS K+ER++KKF+K +
Sbjct: 121 TCEIEADGLLATVLQHEIDHLEGGLFIDHLSRLKRERVVKKFVKAAAR 168
>gi|254515964|ref|ZP_05128024.1| peptide deformylase [gamma proteobacterium NOR5-3]
gi|219675686|gb|EED32052.1| peptide deformylase [gamma proteobacterium NOR5-3]
Length = 168
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 113/162 (69%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+ D L+ +I NM ETMY A GIGLAA+QV++H++LL+
Sbjct: 1 MAVLDILEFPDPRLRTVAKPVEVVDDALRTLIDNMLETMYAASGIGLAATQVNVHQRLLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
LD S+N + +FINP++ Y+EGCLS+PG + ++ R + IRV AL +GK F
Sbjct: 61 LDTSENRDSPMIFINPQVTILDDTLGSYDEGCLSVPGFYEEVNRPRTIRVEALGRDGKAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ +GL AICLQHEIDHL+GK+F++Y+S K+ RI K K
Sbjct: 121 SLELDGLTAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEK 162
>gi|120552986|ref|YP_957337.1| peptide deformylase [Marinobacter aquaeolei VT8]
gi|120322835|gb|ABM17150.1| peptide deformylase [Marinobacter aquaeolei VT8]
Length = 167
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 115/157 (73%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+ YPD RL+ IA+P+ E +++ +I +M ETMY A GIGLAA+QVD+HKQ++++D+S+
Sbjct: 5 ILEYPDPRLRTIAKPVEEVTDDIRTLIDDMFETMYDARGIGLAATQVDVHKQIIVMDLSE 64
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
+ + +VFINPK+ E + EGCLS+PG + +KR + R+ A + +GK F + AE
Sbjct: 65 DKTEPRVFINPKVEVLDGELEAMQEGCLSVPGFYEDVKRIEHCRITAKDRDGKEFVLEAE 124
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLA+C+QHE+DHLNGK+F++YLS K+ RI KK K
Sbjct: 125 GLLAVCIQHEMDHLNGKLFVDYLSQLKRNRIRKKLEK 161
>gi|325913842|ref|ZP_08176201.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
gi|325539917|gb|EGD11554.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
Length = 170
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 116/165 (70%), Gaps = 4/165 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDATEVTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N QVFINP+I+ E Q+Y EGCLS+PGIF + R+ I V L+ +G
Sbjct: 61 FMVIDVSEEKNAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAIAVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ E+ EGLLA+C+QHE+DHL+GK+F++YLS K+E + KK K
Sbjct: 120 QAHELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164
>gi|350560488|ref|ZP_08929328.1| peptide deformylase [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349782756|gb|EGZ37039.1| peptide deformylase [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 180
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 122/166 (73%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ A P+ E ++++++ +M ETMY A GIGLAA+Q+++ K++L+
Sbjct: 1 MALREILCFPDPRLRLRAVPVAEVSDSIRELVDDMFETMYAAPGIGLAATQINVQKRILV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
D+S++ N+ INP+I+ E+++ +EGCLS+PG + +++R++RIRV ALN +G+ F
Sbjct: 61 ADVSEDQNEPYCLINPEILSRDGEEEM-DEGCLSVPGFYERVRRAERIRVRALNRDGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ GLLA+C+QHEIDHL+GK+F++YLSN K+ RI KK K +
Sbjct: 120 ELETGGLLAVCIQHEIDHLDGKLFVDYLSNLKRTRIRKKLEKQTAR 165
>gi|358451497|ref|ZP_09161930.1| peptide deformylase [Marinobacter manganoxydans MnI7-9]
gi|385333485|ref|YP_005887436.1| peptide deformylase [Marinobacter adhaerens HP15]
gi|311696635|gb|ADP99508.1| peptide deformylase [Marinobacter adhaerens HP15]
gi|357223966|gb|EHJ02498.1| peptide deformylase [Marinobacter manganoxydans MnI7-9]
Length = 167
Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 122/164 (74%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILD 62
+L I+ YPD RL+ IA+P+ E +K+I +M ETMY A GIGLAA+QV++HKQ++++D
Sbjct: 2 ILEILEYPDPRLRTIAKPVEEVTDADRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVMD 61
Query: 63 ISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+S++ ++ +VFINP++ E++ EGCLS+PG + ++R + + A++ +GK FE+
Sbjct: 62 LSEDKSEPRVFINPEVEVLDGEREAMQEGCLSVPGFYEDVERIEHCMIRAMDRDGKPFEL 121
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+GLLA+C+QHE+DHLNG++F++YLS+ K+ RI KK K KK
Sbjct: 122 EAKGLLAVCIQHEMDHLNGRLFVDYLSSLKRNRIRKKLEKQHKK 165
>gi|375110118|ref|ZP_09756354.1| peptide deformylase [Alishewanella jeotgali KCTC 22429]
gi|397168810|ref|ZP_10492246.1| peptide deformylase [Alishewanella aestuarii B11]
gi|374569867|gb|EHR41014.1| peptide deformylase [Alishewanella jeotgali KCTC 22429]
gi|396089397|gb|EJI86971.1| peptide deformylase [Alishewanella aestuarii B11]
Length = 171
Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++++PD RL+ IA+P+ E + +++++ +M ETMY GIGLAA+QV++H ++++
Sbjct: 1 MAVLKVLHFPDERLRTIAKPVAEVNAEIRQLVKDMLETMYDENGIGLAATQVNVHLRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ QVFINP+II + E Y EGCLS+P + + R+K + V A +I+G F
Sbjct: 61 IDLSEERNQPQVFINPEIIAHDGETS-YEEGCLSVPQNYASVSRAKNVTVKAQDIDGNWF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLAICLQHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 ELQADGLLAICLQHELDHLIGKLFIDYLSPLKRDRIRKKLEKEAK 164
>gi|380510245|ref|ZP_09853652.1| peptide deformylase [Xanthomonas sacchari NCPPB 4393]
Length = 170
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 118/168 (70%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ ++++ +M ETMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSAAFQRLLDDMFETMYDAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N QVFINP+I+ E Q+Y EGCLS+PGI+ + R+ I V L+ +G
Sbjct: 61 FMVIDVSEEKNAPQVFINPQIVQRDGE-QVYQEGCLSVPGIYADVTRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ +GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 QPQELSTDGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLAKARK 167
>gi|393763533|ref|ZP_10352153.1| peptide deformylase [Alishewanella agri BL06]
gi|392605601|gb|EIW88492.1| peptide deformylase [Alishewanella agri BL06]
Length = 171
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++++PD RL+ IA+P+ E + +++++ +M ETMY GIGLAA+QV++H ++++
Sbjct: 1 MAVLKVLHFPDERLRTIAKPVAEVNAEIRQLVKDMLETMYDENGIGLAATQVNVHLRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ NQ QVFINP+II + E Y EGCLS+P + + R+K + V A +I+G F
Sbjct: 61 IDLSEDRNQPQVFINPEIIAHDGETS-YEEGCLSVPQNYASVSRAKIVTVKAQDIDGNWF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLAICLQHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 ELQADGLLAICLQHELDHLIGKLFIDYLSPLKRDRIRKKLEKEAK 164
>gi|289209433|ref|YP_003461499.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
gi|288945064|gb|ADC72763.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
Length = 177
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+++PD RL+ AEP+ D ++ ++ +M ETMY A GIGLAA+Q+++ K++L+ D+S
Sbjct: 6 ILHFPDPRLRLKAEPVETVDDEIRTLVDDMLETMYDAPGIGLAATQINVQKRVLVADVSD 65
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
+ ++ V INP+I+ S E+++ +EGCLS+PG + K++R+ RIRV AL +G+ FE+ +
Sbjct: 66 DQSEPHVLINPEILETSGEEEM-DEGCLSVPGFYEKVQRADRIRVRALGRDGEPFELDID 124
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
GLLA+C+QHEIDHL+GK+F++YLS+ K+ RI KK K
Sbjct: 125 GLLAVCIQHEIDHLDGKLFVDYLSSLKRNRIRKKLEKQ 162
>gi|389694008|ref|ZP_10182102.1| peptide deformylase [Microvirga sp. WSM3557]
gi|388587394|gb|EIM27687.1| peptide deformylase [Microvirga sp. WSM3557]
Length = 172
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 122/168 (72%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P++ PD +L+ ++EPIT+ ++++ +M ETMY A G+GLAA Q+ + +++
Sbjct: 1 MSIRPLVIIPDSKLRLVSEPITDISSEIRRLADDMLETMYDAPGVGLAAIQIGVPVRMVT 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+SK++++ Q V INP+I W S+EK++Y EGCLS+P + +++R R+R +N++G+
Sbjct: 61 MDVSKSDDERQPMVLINPEITWASEEKRVYEEGCLSIPEYYEEVERPDRVRFRFMNLQGE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A+GLLA C+QHEIDHLNG +FI+YLS K++R++ KF K K+
Sbjct: 121 TIEQDADGLLATCVQHEIDHLNGVLFIDYLSKLKRDRVMTKFKKAAKR 168
>gi|297250811|ref|ZP_06934289.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
gi|296837967|gb|EFH21905.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
Length = 181
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDGRVRKLVADMFETMYEARGIGLAATQVDVHERVVV 74
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 75 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 133
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 134 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178
>gi|188580852|ref|YP_001924297.1| peptide deformylase [Methylobacterium populi BJ001]
gi|179344350|gb|ACB79762.1| peptide deformylase [Methylobacterium populi BJ001]
Length = 171
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 120/168 (71%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P++ PD +L+ I+EP+ ++ + +M ETMY A G+GLAA Q+ + K+++
Sbjct: 1 MTVRPLVILPDAQLRLISEPVGTVTEEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60
Query: 61 LDISKNNNQ--LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D SK+ N V++NP+I+W S+EK++Y+EGCLS+P + +++R R+RV + ++G+
Sbjct: 61 IDTSKDENAKNPTVYLNPEIVWSSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A+GLLA CLQHEIDHLNG +FI++LS K++R++KKF K K+
Sbjct: 121 TVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAKR 168
>gi|393766411|ref|ZP_10354967.1| peptide deformylase [Methylobacterium sp. GXF4]
gi|392728192|gb|EIZ85501.1| peptide deformylase [Methylobacterium sp. GXF4]
Length = 171
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 121/168 (72%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P++ PD L++ +EP+ ++ ++ +M ETMY A G+GLAA QV + K+++
Sbjct: 1 MTIRPLVILPDAVLRRTSEPVGPITPEIRTLVADMFETMYDAPGVGLAAIQVGVAKRVVT 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D SK + +VFI+P+I+W S+EK++Y+EGCLS+P + +++R R+RV +IEG+
Sbjct: 61 IDTSKEEGVREPRVFIDPEIVWSSEEKRLYDEGCLSIPEYYAEVERPDRVRVKFRDIEGR 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA C+QHEIDHLNG +FI+++S K++R+IK+F K K+
Sbjct: 121 EQEIEADGLLATCIQHEIDHLNGVLFIDHISKLKRDRVIKRFTKAAKR 168
>gi|383936053|ref|ZP_09989483.1| peptide deformylase [Rheinheimera nanhaiensis E407-8]
gi|383702809|dbj|GAB59574.1| peptide deformylase [Rheinheimera nanhaiensis E407-8]
Length = 171
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++YPD RL+ +A+P+ + +K+++ +M +TMY GIGLAA+QV++H+++++
Sbjct: 1 MAVLHVLHYPDERLRTVAKPVDSVNAEIKQLVADMLDTMYAENGIGLAATQVNVHQRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+ VFINP+II S + Y EGCLS+P + K++R+ I V AL+ G F
Sbjct: 61 IDVSEDRNEPMVFINPEIISRSGDTS-YEEGCLSVPQSYGKVERAAEITVKALDKNGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLAICLQHE+DHL GK+FI+YLS K+ERI KK K K
Sbjct: 120 ELKADGLLAICLQHELDHLVGKLFIDYLSPLKRERIRKKLEKEAK 164
>gi|329894842|ref|ZP_08270642.1| Peptide deformylase [gamma proteobacterium IMCC3088]
gi|328922736|gb|EGG30070.1| Peptide deformylase [gamma proteobacterium IMCC3088]
Length = 178
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 119/162 (73%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ +PD RL+ IA+P+ E + +I +M ETMY A GIGLAA+QV++H+++L+
Sbjct: 11 MALLQILEFPDPRLRTIAKPVAEVTDQHRALIKDMFETMYQAPGIGLAATQVNVHERILV 70
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP++ E Y+EGCLS+PG ++ + R +RI+V ALN +G+ +
Sbjct: 71 IDVSEDKSEPRVFINPEVEVLDPELGEYDEGCLSVPGFYDTVCRPQRIKVRALNEQGEAY 130
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E GLLAICLQHEIDHL+GK+F++YLS K+ RI KK K
Sbjct: 131 EEELGGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEK 172
>gi|345876227|ref|ZP_08828001.1| peptide deformylase [Neisseria weaveri LMG 5135]
gi|417957675|ref|ZP_12600595.1| peptide deformylase [Neisseria weaveri ATCC 51223]
gi|343966832|gb|EGV35084.1| peptide deformylase [Neisseria weaveri LMG 5135]
gi|343968008|gb|EGV36246.1| peptide deformylase [Neisseria weaveri ATCC 51223]
Length = 166
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ E D ++ ++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILKYPDERLHIVAKPVAEIDDRIRTLVADMFETMYEANGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ +VFINP II + + Y EGCLS+PGI++ + R++ + V AL+ +G+ F
Sbjct: 61 MDLSEERNEPRVFINP-IITHKDGETTYEEGCLSVPGIYDTVTRAEHVIVEALDEKGQKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+GLLAIC+QHE+DHL GK+F+E+LS K+ RI K K K+
Sbjct: 120 TLEADGLLAICIQHELDHLMGKVFVEHLSQLKQNRIKTKLKKRAKQ 165
>gi|422110718|ref|ZP_16380632.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378546|emb|CBX22818.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 167
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>gi|340363530|ref|ZP_08685860.1| peptide deformylase [Neisseria macacae ATCC 33926]
gi|339885675|gb|EGQ75382.1| peptide deformylase [Neisseria macacae ATCC 33926]
Length = 174
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 8 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 67
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 68 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 126
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 127 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 171
>gi|336450417|ref|ZP_08620868.1| peptide deformylase [Idiomarina sp. A28L]
gi|336282812|gb|EGN76033.1| peptide deformylase [Idiomarina sp. A28L]
Length = 170
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 120/167 (71%), Gaps = 5/167 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+ YPD RL+ +A+PI D L+++I +M ETMY + G+GLAA+QV++HK+L I
Sbjct: 1 MAEMTILKYPDERLRTVAKPIESVDDALRQVIDDMFETMYSSEGVGLAATQVNVHKRLFI 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYN--EGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
D S+ N+ VFINP I ++ IY EGCLS P ++ K++R+ +I+V AL+ EG+
Sbjct: 61 ADCSEKGNEPLVFINPVI---TERDGIYENEEGCLSFPNVYAKVERAGKIKVRALDREGE 117
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+FE AEGLLAIC+QHEIDHLNGK+F++YLS K++RI KK K +
Sbjct: 118 IFEREAEGLLAICIQHEIDHLNGKLFVDYLSPLKRDRIRKKLEKEAR 164
>gi|387891272|ref|YP_006321569.1| peptide deformylase [Pseudomonas fluorescens A506]
gi|423689107|ref|ZP_17663627.1| peptide deformylase [Pseudomonas fluorescens SS101]
gi|387159897|gb|AFJ55096.1| peptide deformylase [Pseudomonas fluorescens A506]
gi|387999206|gb|EIK60535.1| peptide deformylase [Pseudomonas fluorescens SS101]
Length = 168
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 122/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++H ++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +V+INP+ ++E Y EGCLS+P + ++R R+++ AL+ +GK F
Sbjct: 61 MDLSEDRSEPRVYINPEFEPLTEEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|350427684|ref|XP_003494843.1| PREDICTED: peptide deformylase-like [Bombus impatiens]
Length = 170
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LP++ +PD RL+K A+P+TE +++ I +M +TMY GIGLAA+QVD H+++++
Sbjct: 1 MAILPVLRFPDERLRKKAQPVTEITPEIQQFIDDMIDTMYEKQGIGLAATQVDFHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N++ V INP+II S E I +EGCLS+P + R +RI++ AL+ EGK +
Sbjct: 61 IDVSEEGNEVYVIINPEIIDKSGETGI-DEGCLSVPDTQAFVPRFERIKIKALDREGKPY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
EI A+GLLAIC+QHE+DHL+GK+F++YLS K++RI +K K +
Sbjct: 120 EIDADGLLAICIQHEMDHLDGKLFVDYLSALKRQRIAQKLEKQAR 164
>gi|440738507|ref|ZP_20918037.1| peptide deformylase [Pseudomonas fluorescens BRIP34879]
gi|447919231|ref|YP_007399799.1| peptide deformylase [Pseudomonas poae RE*1-1-14]
gi|440380963|gb|ELQ17511.1| peptide deformylase [Pseudomonas fluorescens BRIP34879]
gi|445203094|gb|AGE28303.1| peptide deformylase [Pseudomonas poae RE*1-1-14]
Length = 168
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 121/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++H ++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +V+INP+ + E Y EGCLS+P + ++R R+++ AL+ +GK F
Sbjct: 61 MDLSEDRSEPKVYINPEFEPLTDEMGEYQEGCLSVPEFYESVERPLRVKIKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|302877267|ref|YP_003845831.1| peptide deformylase [Gallionella capsiferriformans ES-2]
gi|302580056|gb|ADL54067.1| peptide deformylase [Gallionella capsiferriformans ES-2]
Length = 167
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL IA+ + + + +K++ +M ETMY A G+GLAA+QV++H+Q+++
Sbjct: 1 MAILQILQYPDERLHTIAKKVVQVNDVTRKLVQDMAETMYAAPGVGLAATQVNVHEQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +++L VFINP+I+ S E++ EGCLS+PGI+ ++R+ +I V ALN +G+ F
Sbjct: 61 VDVSETHDELLVFINPEILHRSGEQE-GEEGCLSVPGIYENVRRADKISVRALNQQGESF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ AEG LA+C+QHE+DHL+G++F+EYLS K+ R+ K K ++
Sbjct: 120 TLDAEGFLAVCIQHEVDHLHGRVFVEYLSQLKQSRLRAKLKKRRRE 165
>gi|313667406|ref|YP_004047690.1| polypeptide deformylase [Neisseria lactamica 020-06]
gi|313004868|emb|CBN86294.1| polypeptide deformylase [Neisseria lactamica 020-06]
Length = 167
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>gi|419795997|ref|ZP_14321571.1| peptide deformylase [Neisseria sicca VK64]
gi|385699950|gb|EIG30213.1| peptide deformylase [Neisseria sicca VK64]
Length = 193
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 27 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP II E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 87 MDLTEDRSEPRVFINPVIIEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 145
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 146 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190
>gi|15676038|ref|NP_273168.1| peptide deformylase [Neisseria meningitidis MC58]
gi|121633988|ref|YP_974233.1| peptide deformylase [Neisseria meningitidis FAM18]
gi|161870945|ref|YP_001600125.1| peptide deformylase [Neisseria meningitidis 053442]
gi|218767202|ref|YP_002341714.1| peptide deformylase [Neisseria meningitidis Z2491]
gi|254805844|ref|YP_003084065.1| peptide deformylase [Neisseria meningitidis alpha14]
gi|385323261|ref|YP_005877700.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis 8013]
gi|385327476|ref|YP_005881779.1| polypeptide deformylase [Neisseria meningitidis alpha710]
gi|385338993|ref|YP_005892866.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis WUE 2594]
gi|385339155|ref|YP_005893027.1| peptide deformylase [Neisseria meningitidis G2136]
gi|385342849|ref|YP_005896720.1| peptide deformylase [Neisseria meningitidis M01-240149]
gi|385850380|ref|YP_005896895.1| peptide deformylase [Neisseria meningitidis M04-240196]
gi|385852320|ref|YP_005898834.1| peptide deformylase [Neisseria meningitidis H44/76]
gi|385854288|ref|YP_005900801.1| peptide deformylase [Neisseria meningitidis M01-240355]
gi|385856258|ref|YP_005902770.1| peptide deformylase [Neisseria meningitidis NZ-05/33]
gi|416159203|ref|ZP_11605679.1| peptide deformylase [Neisseria meningitidis N1568]
gi|416167583|ref|ZP_11607681.1| peptide deformylase [Neisseria meningitidis OX99.30304]
gi|416176242|ref|ZP_11609543.1| peptide deformylase [Neisseria meningitidis M6190]
gi|416181154|ref|ZP_11611509.1| peptide deformylase [Neisseria meningitidis M13399]
gi|416186057|ref|ZP_11613506.1| peptide deformylase [Neisseria meningitidis M0579]
gi|416190858|ref|ZP_11615969.1| peptide deformylase [Neisseria meningitidis ES14902]
gi|416194640|ref|ZP_11617410.1| peptide deformylase [Neisseria meningitidis CU385]
gi|416199747|ref|ZP_11619456.1| peptide deformylase [Neisseria meningitidis 961-5945]
gi|416211454|ref|ZP_11621380.1| peptide deformylase [Neisseria meningitidis M01-240013]
gi|418287327|ref|ZP_12899940.1| peptide deformylase [Neisseria meningitidis NM233]
gi|418289567|ref|ZP_12901836.1| peptide deformylase [Neisseria meningitidis NM220]
gi|421537899|ref|ZP_15984081.1| peptide deformylase [Neisseria meningitidis 93003]
gi|421539307|ref|ZP_15985469.1| peptide deformylase [Neisseria meningitidis 93004]
gi|421541455|ref|ZP_15987572.1| peptide deformylase [Neisseria meningitidis NM255]
gi|421543512|ref|ZP_15989603.1| peptide deformylase [Neisseria meningitidis NM140]
gi|421545572|ref|ZP_15991632.1| peptide deformylase [Neisseria meningitidis NM183]
gi|421547641|ref|ZP_15993673.1| peptide deformylase [Neisseria meningitidis NM2781]
gi|421549669|ref|ZP_15995679.1| peptide deformylase [Neisseria meningitidis 69166]
gi|421551848|ref|ZP_15997830.1| peptide deformylase [Neisseria meningitidis NM576]
gi|421553859|ref|ZP_15999811.1| peptide deformylase [Neisseria meningitidis 98008]
gi|421556096|ref|ZP_16002013.1| peptide deformylase [Neisseria meningitidis 80179]
gi|421558227|ref|ZP_16004111.1| peptide deformylase [Neisseria meningitidis 92045]
gi|421560262|ref|ZP_16006121.1| peptide deformylase [Neisseria meningitidis NM2657]
gi|421562337|ref|ZP_16008164.1| peptide deformylase [Neisseria meningitidis NM2795]
gi|421564486|ref|ZP_16010285.1| peptide deformylase [Neisseria meningitidis NM3081]
gi|421566582|ref|ZP_16012325.1| peptide deformylase [Neisseria meningitidis NM3001]
gi|421907682|ref|ZP_16337557.1| polypeptide deformylase [Neisseria meningitidis alpha704]
gi|433464104|ref|ZP_20421598.1| peptide deformylase [Neisseria meningitidis NM422]
gi|433466227|ref|ZP_20423690.1| peptide deformylase [Neisseria meningitidis 87255]
gi|433468308|ref|ZP_20425746.1| peptide deformylase [Neisseria meningitidis 98080]
gi|433470444|ref|ZP_20427844.1| peptide deformylase [Neisseria meningitidis 68094]
gi|433472491|ref|ZP_20429861.1| peptide deformylase [Neisseria meningitidis 97021]
gi|433474584|ref|ZP_20431932.1| peptide deformylase [Neisseria meningitidis 88050]
gi|433476687|ref|ZP_20434015.1| peptide deformylase [Neisseria meningitidis 70012]
gi|433478834|ref|ZP_20436133.1| peptide deformylase [Neisseria meningitidis 63041]
gi|433480915|ref|ZP_20438187.1| peptide deformylase [Neisseria meningitidis 2006087]
gi|433483039|ref|ZP_20440279.1| peptide deformylase [Neisseria meningitidis 2002038]
gi|433485137|ref|ZP_20442344.1| peptide deformylase [Neisseria meningitidis 97014]
gi|433487308|ref|ZP_20444487.1| peptide deformylase [Neisseria meningitidis M13255]
gi|433489482|ref|ZP_20446621.1| peptide deformylase [Neisseria meningitidis NM418]
gi|433491583|ref|ZP_20448686.1| peptide deformylase [Neisseria meningitidis NM586]
gi|433493705|ref|ZP_20450781.1| peptide deformylase [Neisseria meningitidis NM762]
gi|433495821|ref|ZP_20452870.1| peptide deformylase [Neisseria meningitidis M7089]
gi|433497821|ref|ZP_20454838.1| peptide deformylase [Neisseria meningitidis M7124]
gi|433499893|ref|ZP_20456886.1| peptide deformylase [Neisseria meningitidis NM174]
gi|433501987|ref|ZP_20458960.1| peptide deformylase [Neisseria meningitidis NM126]
gi|433504106|ref|ZP_20461051.1| peptide deformylase [Neisseria meningitidis 9506]
gi|433508452|ref|ZP_20465338.1| peptide deformylase [Neisseria meningitidis 12888]
gi|433510378|ref|ZP_20467222.1| peptide deformylase [Neisseria meningitidis 4119]
gi|433512468|ref|ZP_20469270.1| peptide deformylase [Neisseria meningitidis 63049]
gi|433514579|ref|ZP_20471355.1| peptide deformylase [Neisseria meningitidis 2004090]
gi|433516695|ref|ZP_20473449.1| peptide deformylase [Neisseria meningitidis 96023]
gi|433518888|ref|ZP_20475615.1| peptide deformylase [Neisseria meningitidis 65014]
gi|433520897|ref|ZP_20477599.1| peptide deformylase [Neisseria meningitidis 61103]
gi|433523044|ref|ZP_20479717.1| peptide deformylase [Neisseria meningitidis 97020]
gi|433525160|ref|ZP_20481806.1| peptide deformylase [Neisseria meningitidis 69096]
gi|433527272|ref|ZP_20483885.1| peptide deformylase [Neisseria meningitidis NM3652]
gi|433529363|ref|ZP_20485963.1| peptide deformylase [Neisseria meningitidis NM3642]
gi|433531485|ref|ZP_20488054.1| peptide deformylase [Neisseria meningitidis 2007056]
gi|433533699|ref|ZP_20490248.1| peptide deformylase [Neisseria meningitidis 2001212]
gi|433535710|ref|ZP_20492230.1| peptide deformylase [Neisseria meningitidis 77221]
gi|433537870|ref|ZP_20494357.1| peptide deformylase [Neisseria meningitidis 70030]
gi|433540043|ref|ZP_20496500.1| peptide deformylase [Neisseria meningitidis 63006]
gi|54036954|sp|P63916.1|DEF_NEIMB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|54040742|sp|P63915.1|DEF_NEIMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|158512959|sp|A1KRE5.1|DEF_NEIMF RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189083074|sp|A9M464.1|DEF_NEIM0 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|7225325|gb|AAF40569.1| peptide deformylase [Neisseria meningitidis MC58]
gi|120865694|emb|CAM09421.1| polypeptide deformylase [Neisseria meningitidis FAM18]
gi|121051210|emb|CAM07481.1| polypeptide deformylase [Neisseria meningitidis Z2491]
gi|161596498|gb|ABX74158.1| polypeptide deformylase [Neisseria meningitidis 053442]
gi|254669386|emb|CBA08535.1| peptide deformylase [Neisseria meningitidis alpha14]
gi|254671149|emb|CBA08206.1| polypeptide deformylase [Neisseria meningitidis alpha153]
gi|254672814|emb|CBA06953.1| polypeptide deformylase [Neisseria meningitidis alpha275]
gi|261391648|emb|CAX49096.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis 8013]
gi|308388328|gb|ADO30648.1| polypeptide deformylase [Neisseria meningitidis alpha710]
gi|319411407|emb|CBY91818.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis WUE 2594]
gi|325129146|gb|EGC51994.1| peptide deformylase [Neisseria meningitidis N1568]
gi|325131145|gb|EGC53866.1| peptide deformylase [Neisseria meningitidis OX99.30304]
gi|325133177|gb|EGC55848.1| peptide deformylase [Neisseria meningitidis M6190]
gi|325135219|gb|EGC57844.1| peptide deformylase [Neisseria meningitidis M13399]
gi|325137169|gb|EGC59764.1| peptide deformylase [Neisseria meningitidis M0579]
gi|325138789|gb|EGC61341.1| peptide deformylase [Neisseria meningitidis ES14902]
gi|325141255|gb|EGC63754.1| peptide deformylase [Neisseria meningitidis CU385]
gi|325143271|gb|EGC65609.1| peptide deformylase [Neisseria meningitidis 961-5945]
gi|325145432|gb|EGC67708.1| peptide deformylase [Neisseria meningitidis M01-240013]
gi|325197399|gb|ADY92855.1| peptide deformylase [Neisseria meningitidis G2136]
gi|325199324|gb|ADY94779.1| peptide deformylase [Neisseria meningitidis H44/76]
gi|325203055|gb|ADY98509.1| peptide deformylase [Neisseria meningitidis M01-240149]
gi|325203229|gb|ADY98682.1| peptide deformylase [Neisseria meningitidis M01-240355]
gi|325205203|gb|ADZ00656.1| peptide deformylase [Neisseria meningitidis M04-240196]
gi|325207147|gb|ADZ02599.1| peptide deformylase [Neisseria meningitidis NZ-05/33]
gi|372203322|gb|EHP17021.1| peptide deformylase [Neisseria meningitidis NM220]
gi|372203898|gb|EHP17495.1| peptide deformylase [Neisseria meningitidis NM233]
gi|389604730|emb|CCA43656.1| peptide deformylase [Neisseria meningitidis alpha522]
gi|393291351|emb|CCI73556.1| polypeptide deformylase [Neisseria meningitidis alpha704]
gi|402317936|gb|EJU53463.1| peptide deformylase [Neisseria meningitidis 93003]
gi|402319824|gb|EJU55328.1| peptide deformylase [Neisseria meningitidis NM255]
gi|402321887|gb|EJU57358.1| peptide deformylase [Neisseria meningitidis 93004]
gi|402325800|gb|EJU61207.1| peptide deformylase [Neisseria meningitidis NM183]
gi|402326354|gb|EJU61756.1| peptide deformylase [Neisseria meningitidis NM140]
gi|402327661|gb|EJU63048.1| peptide deformylase [Neisseria meningitidis NM2781]
gi|402331620|gb|EJU66952.1| peptide deformylase [Neisseria meningitidis 69166]
gi|402333116|gb|EJU68431.1| peptide deformylase [Neisseria meningitidis NM576]
gi|402334217|gb|EJU69509.1| peptide deformylase [Neisseria meningitidis 98008]
gi|402337949|gb|EJU73188.1| peptide deformylase [Neisseria meningitidis 80179]
gi|402338621|gb|EJU73852.1| peptide deformylase [Neisseria meningitidis 92045]
gi|402340435|gb|EJU75635.1| peptide deformylase [Neisseria meningitidis NM2657]
gi|402342993|gb|EJU78148.1| peptide deformylase [Neisseria meningitidis NM2795]
gi|402345006|gb|EJU80133.1| peptide deformylase [Neisseria meningitidis NM3001]
gi|402346083|gb|EJU81187.1| peptide deformylase [Neisseria meningitidis NM3081]
gi|432205015|gb|ELK61046.1| peptide deformylase [Neisseria meningitidis 87255]
gi|432205914|gb|ELK61929.1| peptide deformylase [Neisseria meningitidis NM422]
gi|432206644|gb|ELK62648.1| peptide deformylase [Neisseria meningitidis 98080]
gi|432211877|gb|ELK67821.1| peptide deformylase [Neisseria meningitidis 68094]
gi|432212375|gb|ELK68313.1| peptide deformylase [Neisseria meningitidis 97021]
gi|432212644|gb|ELK68579.1| peptide deformylase [Neisseria meningitidis 88050]
gi|432217840|gb|ELK73705.1| peptide deformylase [Neisseria meningitidis 70012]
gi|432218808|gb|ELK74660.1| peptide deformylase [Neisseria meningitidis 63041]
gi|432219268|gb|ELK75115.1| peptide deformylase [Neisseria meningitidis 2006087]
gi|432223869|gb|ELK79644.1| peptide deformylase [Neisseria meningitidis 2002038]
gi|432224980|gb|ELK80740.1| peptide deformylase [Neisseria meningitidis 97014]
gi|432226073|gb|ELK81806.1| peptide deformylase [Neisseria meningitidis M13255]
gi|432230478|gb|ELK86153.1| peptide deformylase [Neisseria meningitidis NM418]
gi|432231268|gb|ELK86935.1| peptide deformylase [Neisseria meningitidis NM586]
gi|432231883|gb|ELK87538.1| peptide deformylase [Neisseria meningitidis NM762]
gi|432237004|gb|ELK92604.1| peptide deformylase [Neisseria meningitidis M7124]
gi|432237463|gb|ELK93056.1| peptide deformylase [Neisseria meningitidis M7089]
gi|432237961|gb|ELK93546.1| peptide deformylase [Neisseria meningitidis NM174]
gi|432243489|gb|ELK99000.1| peptide deformylase [Neisseria meningitidis 9506]
gi|432243742|gb|ELK99248.1| peptide deformylase [Neisseria meningitidis NM126]
gi|432250103|gb|ELL05501.1| peptide deformylase [Neisseria meningitidis 12888]
gi|432250223|gb|ELL05618.1| peptide deformylase [Neisseria meningitidis 63049]
gi|432250656|gb|ELL06046.1| peptide deformylase [Neisseria meningitidis 4119]
gi|432256243|gb|ELL11566.1| peptide deformylase [Neisseria meningitidis 2004090]
gi|432256487|gb|ELL11809.1| peptide deformylase [Neisseria meningitidis 96023]
gi|432256853|gb|ELL12164.1| peptide deformylase [Neisseria meningitidis 65014]
gi|432262681|gb|ELL17916.1| peptide deformylase [Neisseria meningitidis 61103]
gi|432262917|gb|ELL18148.1| peptide deformylase [Neisseria meningitidis 97020]
gi|432263308|gb|ELL18528.1| peptide deformylase [Neisseria meningitidis 69096]
gi|432267341|gb|ELL22519.1| peptide deformylase [Neisseria meningitidis NM3652]
gi|432269505|gb|ELL24662.1| peptide deformylase [Neisseria meningitidis 2007056]
gi|432270014|gb|ELL25161.1| peptide deformylase [Neisseria meningitidis NM3642]
gi|432274252|gb|ELL29345.1| peptide deformylase [Neisseria meningitidis 2001212]
gi|432276010|gb|ELL31072.1| peptide deformylase [Neisseria meningitidis 70030]
gi|432276721|gb|ELL31776.1| peptide deformylase [Neisseria meningitidis 77221]
gi|432278024|gb|ELL33068.1| peptide deformylase [Neisseria meningitidis 63006]
Length = 167
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K+I +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>gi|229587596|ref|YP_002869715.1| peptide deformylase [Pseudomonas fluorescens SBW25]
gi|388466634|ref|ZP_10140844.1| peptide deformylase [Pseudomonas synxantha BG33R]
gi|229359462|emb|CAY46303.1| peptide deformylase [Pseudomonas fluorescens SBW25]
gi|388010214|gb|EIK71401.1| peptide deformylase [Pseudomonas synxantha BG33R]
Length = 168
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 121/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++H ++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +V+INP+ + E Y EGCLS+P + ++R R+++ AL+ +GK F
Sbjct: 61 MDLSEDRSEPRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|255067832|ref|ZP_05319687.1| peptide deformylase [Neisseria sicca ATCC 29256]
gi|255047923|gb|EET43387.1| peptide deformylase [Neisseria sicca ATCC 29256]
Length = 193
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 27 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 87 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 145
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 146 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190
>gi|304388911|ref|ZP_07370958.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
gi|427826210|ref|ZP_18993269.1| peptide deformylase [Neisseria meningitidis H44/76]
gi|304337045|gb|EFM03232.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
gi|316985956|gb|EFV64895.1| peptide deformylase [Neisseria meningitidis H44/76]
Length = 181
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K+I +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 74
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 75 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 133
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 134 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178
>gi|433506162|ref|ZP_20463081.1| peptide deformylase [Neisseria meningitidis 9757]
gi|432244178|gb|ELK99673.1| peptide deformylase [Neisseria meningitidis 9757]
Length = 167
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K+I +M ETMY + G+GLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>gi|408479915|ref|ZP_11186134.1| peptide deformylase [Pseudomonas sp. R81]
Length = 168
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 121/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++H ++++
Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +V+INP+ + E Y EGCLS+P + ++R R+++ AL+ +GK F
Sbjct: 61 MDLSEDRSEPKVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 162
>gi|59802191|ref|YP_208903.1| peptide deformylase [Neisseria gonorrhoeae FA 1090]
gi|240015128|ref|ZP_04722041.1| peptide deformylase [Neisseria gonorrhoeae DGI18]
gi|240017578|ref|ZP_04724118.1| peptide deformylase [Neisseria gonorrhoeae FA6140]
gi|268593743|ref|ZP_06127910.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
gi|268597818|ref|ZP_06131985.1| peptide deformylase [Neisseria gonorrhoeae FA19]
gi|268602403|ref|ZP_06136570.1| peptide deformylase [Neisseria gonorrhoeae PID18]
gi|268604665|ref|ZP_06138832.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
gi|268683123|ref|ZP_06149985.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
gi|268687550|ref|ZP_06154412.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
gi|75507292|sp|Q5F5P6.1|DEF_NEIG1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|59719086|gb|AAW90491.1| putative polypeptide deformylase [Neisseria gonorrhoeae FA 1090]
gi|268547132|gb|EEZ42550.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
gi|268551606|gb|EEZ46625.1| peptide deformylase [Neisseria gonorrhoeae FA19]
gi|268586534|gb|EEZ51210.1| peptide deformylase [Neisseria gonorrhoeae PID18]
gi|268588796|gb|EEZ53472.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
gi|268623407|gb|EEZ55807.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
gi|268627834|gb|EEZ60234.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
Length = 167
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>gi|312958120|ref|ZP_07772643.1| peptide deformylase [Pseudomonas fluorescens WH6]
gi|311287551|gb|EFQ66109.1| peptide deformylase [Pseudomonas fluorescens WH6]
Length = 212
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 121/162 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++H ++++
Sbjct: 45 MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 104
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +V+INP+ + E Y EGCLS+P + ++R R+++ AL+ +GK F
Sbjct: 105 MDLSEDRSEPRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPF 164
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K
Sbjct: 165 EMIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEK 206
>gi|297183538|gb|ADI19667.1| N-formylmethionyl-tRNA deformylase [uncultured Alteromonadales
bacterium HF4000_16C08]
Length = 169
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+P+ E + +K+++ +M ETM GIGLAA+QV+ H Q+++
Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+ +VFINP+I I EGCLS+PG + K++R++ I V ALN EG+ F
Sbjct: 61 MDVSEDQNEPRVFINPEITRKDG-STISEEGCLSVPGNYAKVERAEAITVKALNEEGEAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ AEGLLAIC+QHE+DHL GK+FI+YLS K++RI KK K+ +
Sbjct: 120 ELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKDAR 164
>gi|384085893|ref|ZP_09997068.1| peptide deformylase [Acidithiobacillus thiooxidans ATCC 19377]
Length = 167
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 122/166 (73%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL I+ +PD RLK +A+PI D ++++ +M ETMY A GIGLAA QV ++L++
Sbjct: 1 MSLLKILEFPDQRLKNMAQPIVRVDKQVQQLADDMAETMYDAPGIGLAAPQVAAGQRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N N L V +NP+II +S E+++ EGCLS+PG+ ++R+++I + A ++GK+
Sbjct: 61 VDVSENRNDLMVLVNPEIIAHSGEEEM-KEGCLSVPGVLETVRRAEKITLRATTVQGKLI 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GLLA+C+QHEIDHLNG +F+++LS K+ I +K K +++
Sbjct: 120 ELEADGLLAVCIQHEIDHLNGTLFVDHLSRLKQNLIRRKAEKRVRQ 165
>gi|83642943|ref|YP_431378.1| peptide deformylase [Hahella chejuensis KCTC 2396]
gi|123767556|sp|Q2SQX1.1|DEF_HAHCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|83630986|gb|ABC26953.1| peptide deformylase [Hahella chejuensis KCTC 2396]
Length = 168
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 117/165 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+ L I+ +PD RL+ +A+P+ FD L ++I +M ETMY A GIGLAA+QVD+HK++++
Sbjct: 1 MSKLQILEFPDPRLRTVAKPVQTFDAALGQLIDDMFETMYEAPGIGLAATQVDVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP I + + EGCLS+PG + + R +++ A + G+ +
Sbjct: 61 IDVSEDKSEPMVFINPDIEVLDGDPEEMQEGCLSVPGFYESVTRIPHVKIRAQDRNGESY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A GLLA+CLQHE+DHLNGK++++YLSN K+ RI KK K K
Sbjct: 121 EMEARGLLAVCLQHEVDHLNGKLYVDYLSNVKRTRIRKKLEKQHK 165
>gi|194099884|ref|YP_002003021.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
gi|291042744|ref|ZP_06568485.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
gi|293398236|ref|ZP_06642441.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
gi|385336803|ref|YP_005890750.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107]
gi|193935174|gb|ACF30998.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
gi|291013178|gb|EFE05144.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
gi|291611499|gb|EFF40569.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
gi|317165346|gb|ADV08887.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 181
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 74
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 75 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKF 133
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 134 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178
>gi|395778965|ref|ZP_10459476.1| peptide deformylase [Bartonella elizabethae Re6043vi]
gi|423714813|ref|ZP_17689037.1| peptide deformylase [Bartonella elizabethae F9251]
gi|395417140|gb|EJF83492.1| peptide deformylase [Bartonella elizabethae Re6043vi]
gi|395431032|gb|EJF97060.1| peptide deformylase [Bartonella elizabethae F9251]
Length = 176
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 121/169 (71%), Gaps = 4/169 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P++ PD L++I++PI FD L+K+ +M ETMY A GIGLAA Q+ I ++L+
Sbjct: 1 MSMRPLVTLPDPILREISKPIEHFDAALQKLADDMLETMYRAKGIGLAAIQIGIPLRMLV 60
Query: 61 LDISKNN---NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+DIS N N L V INP+I+W S+E+ IY EGCLS+P F +++R KR+RV N EG
Sbjct: 61 MDISPNEEPKNPL-VIINPEILWLSEERNIYKEGCLSIPDYFAEVERPKRLRVRYQNREG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
K EI A+ LLA CLQHE+DHL+G++FI+Y+S K++ +I+KF K K+
Sbjct: 120 KQTEIEADDLLATCLQHEMDHLDGRLFIDYISKIKRDMVIRKFKKRAKE 168
>gi|126668176|ref|ZP_01739137.1| peptide deformylase [Marinobacter sp. ELB17]
gi|126627325|gb|EAZ97961.1| peptide deformylase [Marinobacter sp. ELB17]
Length = 167
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 121/164 (73%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILD 62
+L I+ YPD RL+ +A+P+T ++ +I +M ETMY A GIGLAASQV++H+Q++++D
Sbjct: 2 ILNILEYPDPRLRTLAKPVTTVTDEIRTLIDDMFETMYDAAGIGLAASQVNVHQQIVVMD 61
Query: 63 ISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+S++N++ +VFINPKI + + EGCLS+PG + +++R + + AL+ G+ FEI
Sbjct: 62 LSEDNSEPKVFINPKIGILDGDLEAMQEGCLSVPGFYEEVERIEHCLIKALDRNGEAFEI 121
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A GLLA+C+QHE+DHLNGK+F++YLS+ K+ RI KK K KK
Sbjct: 122 EARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLQKK 165
>gi|49474898|ref|YP_032939.1| peptide deformylase [Bartonella henselae str. Houston-1]
gi|81696215|sp|Q6G5F0.1|DEF_BARHE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|49237703|emb|CAF26892.1| Polypeptide deformylase [Bartonella henselae str. Houston-1]
Length = 176
Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 119/168 (70%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P++ PD L++I++P+ D ++K+ +M ETMYHA G+GLAA Q+ I ++L+
Sbjct: 1 MPMRPLVIVPDPILREISKPVEYIDSAVQKLADDMLETMYHAQGVGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD+S+N+ Q V INP+++W S E+ IY EGCLS+P F +++R KR+ V N EGK
Sbjct: 61 LDVSRNDEQKNPLVIINPEVLWLSDERNIYKEGCLSIPEYFAEVERPKRLCVRYQNREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+ LLA CLQHEIDHLNG++FI+YLS K++ +I+KF K K+
Sbjct: 121 QTEIEADDLLATCLQHEIDHLNGRLFIDYLSKIKRDMVIRKFKKRAKE 168
>gi|378824112|ref|ZP_09846654.1| peptide deformylase [Sutterella parvirubra YIT 11816]
gi|378597062|gb|EHY30408.1| peptide deformylase [Sutterella parvirubra YIT 11816]
Length = 177
Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 113/162 (69%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YP L AEPIT FD L+++ +M ETMY A G+GLAA+QV + +++++
Sbjct: 1 MALLPILQYPHPALAARAEPITAFDEELRRLAADMAETMYAAPGVGLAANQVGVLRRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ + L INP+++ S+E + EGCLSL G++ +KR R+RV A N++G+ F
Sbjct: 61 VDVTEDKSGLMTLINPEVVEASEELRDCEEGCLSLKGLYEHVKRPDRVRVRAQNLDGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A GLLA C+QHEIDHL G +FI++LS KK+R +K K
Sbjct: 121 EFEATGLLATCVQHEIDHLEGVVFIDHLSRLKKDRAAQKLRK 162
>gi|261378988|ref|ZP_05983561.1| peptide deformylase [Neisseria cinerea ATCC 14685]
gi|269144603|gb|EEZ71021.1| peptide deformylase [Neisseria cinerea ATCC 14685]
Length = 167
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++ ++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAESVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E+LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164
>gi|349610696|ref|ZP_08890029.1| peptide deformylase [Neisseria sp. GT4A_CT1]
gi|348609572|gb|EGY59308.1| peptide deformylase [Neisseria sp. GT4A_CT1]
Length = 167
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 120/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ VFINP II E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPLVFINPVIIEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>gi|225075032|ref|ZP_03718231.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
NRL30031/H210]
gi|261380545|ref|ZP_05985118.1| peptide deformylase [Neisseria subflava NJ9703]
gi|319639522|ref|ZP_07994269.1| peptide deformylase [Neisseria mucosa C102]
gi|224953637|gb|EEG34846.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
NRL30031/H210]
gi|284796513|gb|EFC51860.1| peptide deformylase [Neisseria subflava NJ9703]
gi|317399093|gb|EFV79767.1| peptide deformylase [Neisseria mucosa C102]
Length = 167
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++ ++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E+LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164
>gi|410664993|ref|YP_006917364.1| peptide deformylase [Simiduia agarivorans SA1 = DSM 21679]
gi|409027350|gb|AFU99634.1| peptide deformylase [Simiduia agarivorans SA1 = DSM 21679]
Length = 167
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 116/161 (72%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+ +PD RL+ A+P+ E ++++I +M ETMY GIGLAA+Q+++H+Q++++DIS+
Sbjct: 5 ILEFPDPRLRTKAKPVAEVTDAVRELIDDMFETMYDCPGIGLAATQINVHEQIIVIDISE 64
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
NQ VFINP+I +E Y+EGCLS+PG ++R IRV AL+ +GK FEI +
Sbjct: 65 EQNQPMVFINPEIEVLDQETGTYDEGCLSVPGFSETVERPIHIRVRALDRDGKAFEIQPD 124
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
GLLA C+QHEIDHLNGK+F++++S K++RI KK K ++
Sbjct: 125 GLLATCIQHEIDHLNGKLFVDHISTLKRDRIRKKLEKQHRQ 165
>gi|241760428|ref|ZP_04758522.1| peptide deformylase [Neisseria flavescens SK114]
gi|241319097|gb|EER55590.1| peptide deformylase [Neisseria flavescens SK114]
Length = 167
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++ ++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E+LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164
>gi|288575787|ref|ZP_05977581.2| peptide deformylase [Neisseria mucosa ATCC 25996]
gi|288566988|gb|EFC88548.1| peptide deformylase [Neisseria mucosa ATCC 25996]
Length = 193
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 27 MALLNILQYPDERLHTVAKPVEKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VF+NP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 87 MDLTEDRSEPRVFVNPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 145
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 146 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190
>gi|254491036|ref|ZP_05104217.1| peptide deformylase [Methylophaga thiooxidans DMS010]
gi|224463549|gb|EEF79817.1| peptide deformylase [Methylophaga thiooxydans DMS010]
Length = 167
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 125/166 (75%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+++PD RL+K AEPIT+ + ++++ +M ETMY A GIGLAA+QV+I K++L+
Sbjct: 1 MAILNILHFPDPRLRKKAEPITDVNDKIRQLADDMLETMYDAPGIGLAATQVNIQKRILV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ + V INP+I+ E++ + EGCLS+P + + R+ ++++ A+N++G+ F
Sbjct: 61 IDISEDKSDPLVLINPEIVAAEGERE-FEEGCLSVPEAYEAVIRADKVKIKAVNLQGEDF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E +GLLA C+QHEIDHL+GK+F++YLSN K++RI K+ K+ K+
Sbjct: 120 EFTTDGLLATCVQHEIDHLDGKLFVDYLSNLKRQRIKKRLEKHQKQ 165
>gi|23009516|ref|ZP_00050535.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
magnetotacticum MS-1]
Length = 171
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 119/168 (70%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P++ PD +L+ I+EP+ ++ + +M ETMY A G+GLAA Q+ + K+++
Sbjct: 1 MTVRPLVILPDAQLRLISEPVEAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVPKRVVT 60
Query: 61 LDISKNNNQ--LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D SK+ V++NP+I+W S+EK++Y+EGCLS+P + +++R R+RV + ++G+
Sbjct: 61 IDTSKDETAKNPTVYLNPEIVWASEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A+GLLA CLQHEIDHLNG +FI++LS K++R++KKF K K+
Sbjct: 121 TVEREADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFSKAAKR 168
>gi|254501503|ref|ZP_05113654.1| peptide deformylase [Labrenzia alexandrii DFL-11]
gi|222437574|gb|EEE44253.1| peptide deformylase [Labrenzia alexandrii DFL-11]
Length = 189
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 112/167 (67%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT PII PD L+++ PI + D + +M ETMY A GIGLAASQV I K++ +
Sbjct: 18 MTKRPIITIPDPVLREVCAPIEKVDAETIALADDMLETMYDAPGIGLAASQVGILKRIFV 77
Query: 61 LDISKNN--NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD++K + + VFINP+IIWY E +Y EGCLS+P + ++R + V ++ EG
Sbjct: 78 LDVAKEDAPKEPMVFINPEIIWYGDELSVYQEGCLSIPDYYEDVERPAEVAVKFMDREGA 137
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
EI A+GLLA C+QHE+DHLNGK+FI+YLS K++R++KKF K K
Sbjct: 138 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAK 184
>gi|402772862|ref|YP_006592399.1| peptide deformylase [Methylocystis sp. SC2]
gi|401774882|emb|CCJ07748.1| Peptide deformylase [Methylocystis sp. SC2]
Length = 188
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPII PD L+KI+EP+ D +++++ +M ETMY A G+GLAA QV + K++++
Sbjct: 1 MAILPIITLPDPLLRKISEPVDRVDDEVRRLLDDMLETMYEAPGVGLAAIQVAVAKRIVV 60
Query: 61 LDISKNN-NQLQVF-INPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DI K + +F INP+IIW S+E +Y EGCLS+P F +KR R+RV L+ EG
Sbjct: 61 VDIGKTEETRAPLFLINPEIIWASEELSVYQEGCLSVPDYFEDVKRPARVRVRHLDREGA 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E AEGLLA +QHE+DHL G +FI++LS K+ER++KKF K +
Sbjct: 121 VQEFDAEGLLATVVQHELDHLEGGLFIDHLSRLKRERVVKKFNKAAR 167
>gi|89092291|ref|ZP_01165245.1| peptide deformylase [Neptuniibacter caesariensis]
gi|89083379|gb|EAR62597.1| peptide deformylase [Oceanospirillum sp. MED92]
Length = 171
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 115/162 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD RL+ IAEP++E ++ I +M ETMY A GIGLAA+QV+IHK+++
Sbjct: 1 MAKLTILEYPDPRLRTIAEPVSEVTDEIRAQIDDMFETMYAAPGIGLAATQVNIHKRIVT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS + N+ V INP+ +E Y EGCLS+PG + +KR ++I++ AL+ G+ +
Sbjct: 61 MDISDDQNEPLVLINPEFEVIDEELHKYQEGCLSVPGFYEDVKRPQKIKLKALDYNGEAY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLA+C+QHE+DHLNGK+F++YLS K+ RI K K
Sbjct: 121 ELEAEGLLAVCIQHELDHLNGKLFVDYLSMLKRNRIKGKLEK 162
>gi|78049482|ref|YP_365657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325926150|ref|ZP_08187511.1| peptide deformylase [Xanthomonas perforans 91-118]
gi|346726574|ref|YP_004853243.1| peptide deformylase [Xanthomonas axonopodis pv. citrumelo F1]
gi|78037912|emb|CAJ25657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325543495|gb|EGD14917.1| peptide deformylase [Xanthomonas perforans 91-118]
gi|346651321|gb|AEO43945.1| peptide deformylase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 170
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 117/168 (69%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++DIS N QVF+NP+I+ E Q+Y EGCLS+PGI+ + R+ I V L+ +G
Sbjct: 61 FMVIDISDEKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ A+GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 QAQELQADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167
>gi|384426237|ref|YP_005635594.1| peptide deformylase [Xanthomonas campestris pv. raphani 756C]
gi|341935337|gb|AEL05476.1| peptide deformylase [Xanthomonas campestris pv. raphani 756C]
Length = 170
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 116/165 (70%), Gaps = 4/165 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDI---NLKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ + QVFINP+I+ E Q+Y EGCLS+PGIF + R+ I V L+ +G
Sbjct: 61 FMVIDVSEEKDAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ E+ +GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K
Sbjct: 120 QAQELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164
>gi|88801027|ref|ZP_01116576.1| peptide deformylase [Reinekea blandensis MED297]
gi|88776230|gb|EAR07456.1| peptide deformylase [Reinekea sp. MED297]
Length = 169
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ +PD RL+ +A+PI + D ++K+ +M ETMY A GIGLAASQVD H +L++
Sbjct: 1 MALLDILEFPDPRLRTVAKPIEKVDGEIQKLADDMLETMYDAPGIGLAASQVDRHIRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N + INP+ ++ + Y EGCLS+PG + K+ RS RI V ALN +G
Sbjct: 61 VDVSEDQNDPHILINPEYDRLGEDIE-YQEGCLSVPGYYEKVSRSDRISVRALNRDGDAI 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A L AIC+QHEIDHL+GK+F++YLSN K+ RI KK K K+
Sbjct: 120 EFEATDLFAICIQHEIDHLDGKLFVDYLSNLKRTRIRKKLEKQHKQ 165
>gi|94499926|ref|ZP_01306462.1| peptide deformylase [Bermanella marisrubri]
gi|94428127|gb|EAT13101.1| peptide deformylase [Oceanobacter sp. RED65]
Length = 171
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 117/163 (71%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ E +K+I +M ETMY GIGLAA+QV++H+Q+++
Sbjct: 1 MAILEILEFPDTRLRTIAKPVEEVTDAHRKLIDDMFETMYDCPGIGLAATQVNVHEQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ ++ VFINPK+ E + EGCLS+PG + ++R + ++ AL+ G+ +
Sbjct: 61 MDISEDRSEPHVFINPKVTVLDGEPEKMQEGCLSVPGFYEDVERIEHCKIEALDRNGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A GLLA+C+QHE+DHLNGK+F++YLS K++RI KK K
Sbjct: 121 ELEARGLLAVCIQHEMDHLNGKLFVDYLSTTKRDRIRKKLEKQ 163
>gi|329118894|ref|ZP_08247589.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
gi|327464922|gb|EGF11212.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
Length = 167
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D +K +I +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEKIDARIKTLIADMFETMYEARGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ +VFINP +I + + Y EGCLS+PGI++ + R++ + V ALN G+ F
Sbjct: 61 MDLSEERNEPRVFINP-VITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALNENGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K ++
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIRTKLKKRQRQ 165
>gi|325267954|ref|ZP_08134603.1| peptide deformylase [Kingella denitrificans ATCC 33394]
gi|324980640|gb|EGC16303.1| peptide deformylase [Kingella denitrificans ATCC 33394]
Length = 167
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 117/166 (70%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +P+ RL +A+P+ + D ++ ++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLPILTHPNERLHIVAKPVAQVDDRIRTLVADMAETMYAAKGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +NQL INP I E + EGCLS+PGI++ + R++ + V L+ EGK
Sbjct: 61 IDLSEEHNQLLALINPTITKKDGET-TFEEGCLSVPGIYDTVSRAETVTVEYLDTEGKPQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+GLLAIC+QHE+DHL GK+F+EYLS K+ RI K K ++
Sbjct: 120 SLDADGLLAICIQHELDHLAGKLFVEYLSPLKQSRIKSKLKKRQRE 165
>gi|152981416|ref|YP_001353370.1| formylmethionine deformylase [Janthinobacterium sp. Marseille]
gi|151281493|gb|ABR89903.1| formylmethionine deformylase [Janthinobacterium sp. Marseille]
Length = 173
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 117/166 (70%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD RL +AEP+ + ++++++ +MT+TMY GIGLAA+QVD+H Q+++
Sbjct: 1 MTRLSVLQYPDPRLYTVAEPVQQITQDIRRLVADMTQTMYALDGIGLAATQVDVHLQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+LQV INP I+ + + Y EGCLS+P +F ++R+ I V AL+++GK
Sbjct: 61 IDVSEKQNRLQVLINPTIVKMGGKAE-YEEGCLSVPDVFESVRRAAWIHVRALDLDGKTI 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++ AEGL A+C+QHE+DHL G +F+E+LS + RI+ K ++
Sbjct: 120 DVQAEGLKAMCIQHEMDHLQGMVFVEHLSPTNQRRILNSLSKQSRR 165
>gi|21233177|ref|NP_639094.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66770117|ref|YP_244879.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
8004]
gi|188993325|ref|YP_001905335.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
B100]
gi|39931165|sp|Q8P4F9.1|DEF2_XANCP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|21115026|gb|AAM43006.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66575449|gb|AAY50859.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
8004]
gi|167735085|emb|CAP53297.1| Peptide deformylase [Xanthomonas campestris pv. campestris]
Length = 170
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 116/165 (70%), Gaps = 4/165 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDI---NLKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ + QVFINP+I+ E Q+Y EGCLS+PGIF + R+ I V L+ +G
Sbjct: 61 FMVIDVSEEKDAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ E+ +GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K
Sbjct: 120 QPQELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164
>gi|319940733|ref|ZP_08015075.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
gi|319805884|gb|EFW02651.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
Length = 179
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 115/162 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ YP +L AEP+ +F+ +K ++ +M ETMY A G+GLAA+QV I K++++
Sbjct: 1 MAKLPILQYPHPKLAAKAEPVADFNDAIKTLVNDMAETMYAAPGVGLAANQVGILKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI+ +N+ L VFINP+II + + EGCLSL G++ +KR ++RVHA NIEG+ F
Sbjct: 61 IDITDDNSDLLVFINPEIIETKGDLVDHEEGCLSLKGLYEHVKRPGQVRVHAQNIEGEPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ GLLA+C+QHE+DHLNG +FI++LS KK+R K K
Sbjct: 121 ELECTGLLAVCIQHEVDHLNGIVFIDHLSQLKKQRACTKLRK 162
>gi|357416610|ref|YP_004929630.1| peptide deformylase [Pseudoxanthomonas spadix BD-a59]
gi|355334188|gb|AER55589.1| peptide deformylase [Pseudoxanthomonas spadix BD-a59]
Length = 173
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 115/165 (69%), Gaps = 4/165 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITE---FDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+T + + ++ +M ETMY A GIGLAASQVD+H++
Sbjct: 4 MALLPILEFPDPRLRTRAVPVTAERVAEPAFQTLLDDMFETMYQAPGIGLAASQVDVHQR 63
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N QVFINP+I+ S E Q+ EGCLS+PGIF + R++ I V L+ G
Sbjct: 64 FMVIDVSEEKNTPQVFINPEIVDKSGE-QVCQEGCLSVPGIFADVTRAEAITVRFLDRTG 122
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE+DHL+GK+F++YLS K+E + KK K
Sbjct: 123 AAQELQVEGLLAVCIQHELDHLDGKLFVDYLSPLKREMVRKKLAK 167
>gi|429744976|ref|ZP_19278431.1| peptide deformylase [Neisseria sp. oral taxon 020 str. F0370]
gi|429161635|gb|EKY04017.1| peptide deformylase [Neisseria sp. oral taxon 020 str. F0370]
Length = 167
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 123/166 (74%), Gaps = 3/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++ ++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQI-YNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+D+S++ ++ +VFINP I+ K+ Q Y EGCLS+PGI++ + R++R++V AL+ +G+
Sbjct: 61 MDLSEDRSEPRVFINPVIV--EKDGQTTYEEGCLSVPGIYDTVTRAERVKVEALDEKGEK 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
F + A+GLLAIC+QHE+DHL G +F+E+LS K+ RI K K K
Sbjct: 119 FTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164
>gi|238792969|ref|ZP_04636599.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909]
gi|238727823|gb|EEQ19347.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909]
Length = 170
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+HKQ+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R+++++V AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKVRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|335041809|ref|ZP_08534836.1| N-formylmethionyl-tRNA deformylase [Methylophaga aminisulfidivorans
MP]
gi|333788423|gb|EGL54305.1| N-formylmethionyl-tRNA deformylase [Methylophaga aminisulfidivorans
MP]
Length = 167
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+++PD RL+K AEPI E +++++ +M ETMY A GIGLAA+QV++ K+L++
Sbjct: 1 MAILNILHFPDPRLRKKAEPIEEVTDDIRQLADDMLETMYDAPGIGLAANQVNVQKRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ ++ + INP+I+ E++ Y EGCLS+P + + R+ + + A+N +G+ F
Sbjct: 61 IDISEDKSEPLILINPEILDKQGERE-YEEGCLSVPEAYETVVRADTVTIKAVNRDGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E AEGLLA C+QHEIDHL+GK+F++YLSN K+ERI K+ K+ K+
Sbjct: 120 EFSAEGLLATCVQHEIDHLDGKLFVDYLSNLKRERIKKRLEKHQKQ 165
>gi|399543081|ref|YP_006556389.1| peptide deformylase [Marinobacter sp. BSs20148]
gi|399158413|gb|AFP28976.1| Peptide deformylase [Marinobacter sp. BSs20148]
Length = 167
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 119/164 (72%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILD 62
+L I+ YPD RL+ +A+P+ ++ +I +M ETMY A+GIGLAASQV++H+Q++++D
Sbjct: 2 ILDILEYPDPRLRTLAKPVITVTDEIRTLIDDMFETMYDAVGIGLAASQVNVHQQIVVMD 61
Query: 63 ISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+S +N++ +VFINPKI + + EGCLS+PG + ++R + + AL+ G+ FEI
Sbjct: 62 LSDDNSEPRVFINPKIEVLDGDLEAMQEGCLSVPGFYEDVERIEHCLIKALDRNGEAFEI 121
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A GLLA+C+QHE+DHLNGK+F++YLS+ K+ RI KK K KK
Sbjct: 122 EARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLQKK 165
>gi|294625234|ref|ZP_06703874.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|294666267|ref|ZP_06731518.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292600462|gb|EFF44559.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292603976|gb|EFF47376.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 170
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 117/168 (69%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++DIS N QVF+NP+I+ E Q+Y EGCLS+PGI+ + R+ I V L+ +G
Sbjct: 61 FMVIDISDERNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ A+GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 QPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167
>gi|372272357|ref|ZP_09508405.1| peptide deformylase [Marinobacterium stanieri S30]
Length = 171
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 115/162 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ IAEP+ + D ++KI+ +M ETMY A GIGLAA+QV++HK+++
Sbjct: 1 MAKLNILEFPDPRLRTIAEPVEQVDDEIRKIVDDMFETMYDAPGIGLAATQVNVHKRIVT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ N+ V INP+ E + EGCLS+PG + ++KR RI + AL+ +G +
Sbjct: 61 IDISEEGNEPLVMINPEFTVLQDELEEMQEGCLSVPGFYEEVKRPNRILLKALDRDGTPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLA+C+QHE+DHLNGK+F++YL+ K+ RI K K
Sbjct: 121 ELEAEGLLAVCIQHELDHLNGKLFVDYLTALKRNRIRGKLEK 162
>gi|339478027|ref|YP_004706847.1| peptide deformylase [Candidatus Moranella endobia PCIT]
gi|338172578|gb|AEI74979.1| peptide deformylase [Candidatus Moranella endobia PCIT]
Length = 164
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 121/159 (76%), Gaps = 1/159 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MTLL +++YPD RL+K+A+P+T + ++ ++ +M ETMY A GIGLAA+QVDIH++L++
Sbjct: 1 MTLLQVLHYPDKRLRKVAKPVTNVNNAIRSLLNDMFETMYAADGIGLAATQVDIHQRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
LD+S+N+ Q V INP+++ S E I NEGCLS+PG + R+ ++RV AL+ G F
Sbjct: 61 LDVSENHRQRLVLINPELLDKSGEISI-NEGCLSIPGQHCFVPRAAKVRVRALDSNGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKK 159
E+ AE LL+IC+QHE+DHL GK+F++YLS K++ I++K
Sbjct: 120 ELEAEDLLSICIQHEMDHLVGKLFVDYLSPLKRQLILQK 158
>gi|238758793|ref|ZP_04619967.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236]
gi|238703090|gb|EEP95633.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236]
Length = 170
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+HKQ+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R+++++V AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKVRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|288941787|ref|YP_003444027.1| peptide deformylase [Allochromatium vinosum DSM 180]
gi|288897159|gb|ADC62995.1| peptide deformylase [Allochromatium vinosum DSM 180]
Length = 185
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL++ A P+ + D +++++ +M ETMY A GIGLAA+QVD+ +Q+++
Sbjct: 1 MAILDILTFPDPRLRQKARPVEQVDDQIRRLVDDMLETMYAAPGIGLAATQVDVQRQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ FINP+++ +Q+ +EGCLS+PG F + R++R+ V AL+ +GK F
Sbjct: 61 IDVSEGHDTPLCFINPRLVAREGTEQM-DEGCLSVPGFFETVTRAERVTVEALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++ A+GLLA+C+QHE+DHL+GK+F++++S K++RI K K K+
Sbjct: 120 KLDADGLLAVCIQHEMDHLDGKLFVDHISILKRQRIRHKLEKQRKE 165
>gi|422348841|ref|ZP_16429733.1| peptide deformylase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404658893|gb|EKB31755.1| peptide deformylase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 170
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 117/169 (69%), Gaps = 3/169 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPII YPD L AEP+TEF+ L+K+ +M ETMY A G+GLAA+QV K++++
Sbjct: 1 MALLPIIQYPDPVLAAKAEPVTEFNDELRKLAADMAETMYAAPGVGLAANQVGSLKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI+ N L V +NP I +++E + EGCLSL G++ K+ R + V A +++GK F
Sbjct: 61 IDITDEKNNLLVLVNPYIKSHTEELAEFEEGCLSLKGLYEKVSRPDGVTVCAQDLDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI---IKKFLKNIKK 166
EI A GLLA+CLQHE+DHL+G +FI++LS KK+R ++K KN K+
Sbjct: 121 EIEATGLLAVCLQHELDHLDGTVFIDHLSRLKKDRAKTKLRKLRKNDKQ 169
>gi|390990475|ref|ZP_10260760.1| peptide deformylase [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|418515524|ref|ZP_13081704.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|418522002|ref|ZP_13088041.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|372554798|emb|CCF67735.1| peptide deformylase [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|410701626|gb|EKQ60144.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410707822|gb|EKQ66272.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 170
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 117/168 (69%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++DIS N QVF+NP+I+ E Q+Y EGCLS+PGI+ + R+ I V L+ +G
Sbjct: 61 FMVIDISDEKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ A+GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 QPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167
>gi|254483306|ref|ZP_05096537.1| peptide deformylase [marine gamma proteobacterium HTCC2148]
gi|214036401|gb|EEB77077.1| peptide deformylase [marine gamma proteobacterium HTCC2148]
Length = 168
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 116/166 (69%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A P+ ++++ +M ETMY A GIGLAA+QV++H+++L+
Sbjct: 1 MAVLEILEFPDPRLRTVAAPVNSVTDKHRQLLDDMLETMYAAPGIGLAATQVNVHERILV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N VFINP++ KE Y+EGCLS+PG + + R +RI V AL +GK F
Sbjct: 61 IDLSEKQNDPLVFINPEVEILDKELGEYDEGCLSVPGYYETVNRPQRIAVKALGRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EGLLAICLQHEIDHL+GK+F++YLS K+ RI KK K+ ++
Sbjct: 121 SSEIEGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEKDQRR 166
>gi|325924333|ref|ZP_08185877.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
gi|325545198|gb|EGD16508.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
Length = 170
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ ++++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSPAFQRLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S N QVFINP+I+ E Q+Y EGCLS+PGI+ + R+ I V ++ G
Sbjct: 61 FMVIDVSDEKNLPQVFINPQIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYVDRHG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ EGLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 QAQELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167
>gi|285019618|ref|YP_003377329.1| peptide deformylase [Xanthomonas albilineans GPE PC73]
gi|283474836|emb|CBA17335.1| putative peptide deformylase protein [Xanthomonas albilineans GPE
PC73]
Length = 170
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 119/168 (70%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LL I+ +PD RL+ AEP+ ++ ++++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLTILEFPDSRLRTKAEPVDPAEVASVAFQRLLDDMFDTMYAAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N VF+NP+I+ E Q++ EGCLS+PGI+ + RS+ I V L+ +G
Sbjct: 61 FMVIDVSEEKNAPHVFVNPQIVQREGE-QVHQEGCLSVPGIYADVTRSESITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ +GLLA+C+QHE+DHL+GK+F++YLS K+E + KK +K K
Sbjct: 120 QSQELTTDGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLVKARK 167
>gi|406915568|gb|EKD54636.1| hypothetical protein ACD_60C00060G0004 [uncultured bacterium]
Length = 167
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+Y+P L KIA P+TEFD LKK+I +M ETMYHA G+GLAA QV I K++ +
Sbjct: 1 MALLPIVYHPHPALHKIASPVTEFDKALKKLIEDMYETMYHANGVGLAAPQVAISKRIAV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ Q INP+II E ++ GCLS+P ++K+ R+ ++ V A ++ GK F
Sbjct: 61 IDVSEDRTQPFCIINPEIIKKEGE-EMMEAGCLSVPNTYDKVPRATKVIVRAQDVTGKFF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++ GLL CLQHEIDHL+GK++I+YLS+ K+ +IKK K++++
Sbjct: 120 DLEGSGLLGHCLQHEIDHLDGKLYIDYLSSLKRNLLIKKMQKHLRQ 165
>gi|298370618|ref|ZP_06981933.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
gi|298281228|gb|EFI22718.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
Length = 167
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 120/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+ + + D ++K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKSVGKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>gi|339481945|ref|YP_004693731.1| peptide deformylase [Nitrosomonas sp. Is79A3]
gi|338804090|gb|AEJ00332.1| Peptide deformylase [Nitrosomonas sp. Is79A3]
Length = 199
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 116/162 (71%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL +A P+ + ++ +I ++ ETMY A GIGLAA+QVD+H+++++
Sbjct: 33 MAILKILQYPDERLHTVAAPVAQVTDKIRLLIKDLAETMYAAPGIGLAATQVDVHERVIV 92
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ ++QL V INP+II S Y EGCLS+PGI+ K++R++ I V ALN EG+ F
Sbjct: 93 IDTSETHDQLLVLINPEII-ASNGLSDYEEGCLSVPGIYGKVQRAESIAVRALNTEGESF 151
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLA+C+QHE+DHL GK+F+EY S K+ R + + K
Sbjct: 152 VLNADGLLAVCIQHEMDHLAGKVFVEYWSRLKQARTLARLKK 193
>gi|254467786|ref|ZP_05081192.1| peptide deformylase [beta proteobacterium KB13]
gi|207086596|gb|EDZ63879.1| peptide deformylase [beta proteobacterium KB13]
Length = 166
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL KIAE + FD + +K++ +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 1 MALLKILKYPDPRLHKIAEIVEVFDESTEKLVQDMAETMYESKGIGLAATQVDVHRRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS + L V INPK+I + +++ Y+EGCLS+PG F +KR + I + +++G +
Sbjct: 61 IDISDDKKDLLVLINPKLIKFDGQQE-YDEGCLSVPGFFETVKRYENITISYQDLKGNIK 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLL++C+QHE+DHL GK+FIEYLS K++RI KK K
Sbjct: 120 TLEADGLLSVCIQHEMDHLVGKVFIEYLSQLKQQRIKKKISK 161
>gi|15964172|ref|NP_384525.1| peptide deformylase [Sinorhizobium meliloti 1021]
gi|334314822|ref|YP_004547441.1| peptide deformylase [Sinorhizobium meliloti AK83]
gi|384528159|ref|YP_005712247.1| Peptide deformylase [Sinorhizobium meliloti BL225C]
gi|407719261|ref|YP_006838923.1| peptide deformylase [Sinorhizobium meliloti Rm41]
gi|433612205|ref|YP_007189003.1| peptide deformylase [Sinorhizobium meliloti GR4]
gi|15073348|emb|CAC41856.1| Probable peptide deformylase [Sinorhizobium meliloti 1021]
gi|333810335|gb|AEG03004.1| Peptide deformylase [Sinorhizobium meliloti BL225C]
gi|334093816|gb|AEG51827.1| Peptide deformylase [Sinorhizobium meliloti AK83]
gi|407317493|emb|CCM66097.1| Peptide deformylase [Sinorhizobium meliloti Rm41]
gi|429550395|gb|AGA05404.1| peptide deformylase [Sinorhizobium meliloti GR4]
Length = 178
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 117/167 (70%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++++ P+ D +++++ +M ETMY A GIGLAA Q+ + K+LL+
Sbjct: 5 MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 64
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD++K + Q VFINPK++ S+E+ +Y EGCLS+P + +++R I V ++ EGK
Sbjct: 65 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 124
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ AEGLLA CLQHEIDHLNG +FI+Y+S K++ +I++F K K
Sbjct: 125 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAK 171
>gi|384534517|ref|YP_005718602.1| probabable peptide deformylase [Sinorhizobium meliloti SM11]
gi|418400256|ref|ZP_12973798.1| peptide deformylase [Sinorhizobium meliloti CCNWSX0020]
gi|23396548|sp|Q92SH6.2|DEF_RHIME RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|336031409|gb|AEH77341.1| probabable peptide deformylase [Sinorhizobium meliloti SM11]
gi|359505725|gb|EHK78245.1| peptide deformylase [Sinorhizobium meliloti CCNWSX0020]
Length = 174
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 117/167 (70%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++++ P+ D +++++ +M ETMY A GIGLAA Q+ + K+LL+
Sbjct: 1 MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD++K + Q VFINPK++ S+E+ +Y EGCLS+P + +++R I V ++ EGK
Sbjct: 61 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ AEGLLA CLQHEIDHLNG +FI+Y+S K++ +I++F K K
Sbjct: 121 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAK 167
>gi|406595023|ref|YP_006746153.1| peptide deformylase [Alteromonas macleodii ATCC 27126]
gi|407681931|ref|YP_006797105.1| peptide deformylase [Alteromonas macleodii str. 'English Channel
673']
gi|406372344|gb|AFS35599.1| peptide deformylase [Alteromonas macleodii ATCC 27126]
gi|407243542|gb|AFT72728.1| peptide deformylase [Alteromonas macleodii str. 'English Channel
673']
Length = 169
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 120/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+P+ E + +K+++ +M ETM GIGLAA+QV+ H Q+++
Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+ +VFINP+II I EGCLS+PG + K++R++ I V AL+ G+ F
Sbjct: 61 MDVSEDQNEPRVFINPEIIRKDG-STISEEGCLSVPGNYAKVERAESITVKALDQNGESF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ AEGLLAIC+QHE+DHL GK+FI+YLS K++RI KK K +
Sbjct: 120 ELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEAR 164
>gi|22127893|ref|NP_671316.1| peptide deformylase [Yersinia pestis KIM10+]
gi|45440100|ref|NP_991639.1| peptide deformylase [Yersinia pestis biovar Microtus str. 91001]
gi|51597955|ref|YP_072146.1| peptide deformylase [Yersinia pseudotuberculosis IP 32953]
gi|108809222|ref|YP_653138.1| peptide deformylase [Yersinia pestis Antiqua]
gi|108813987|ref|YP_649754.1| peptide deformylase [Yersinia pestis Nepal516]
gi|145597483|ref|YP_001161558.1| peptide deformylase [Yersinia pestis Pestoides F]
gi|150260710|ref|ZP_01917438.1| polypeptide deformylase [Yersinia pestis CA88-4125]
gi|153950090|ref|YP_001402830.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758]
gi|162418261|ref|YP_001605206.1| peptide deformylase [Yersinia pestis Angola]
gi|165927898|ref|ZP_02223730.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165936499|ref|ZP_02225067.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275]
gi|166010552|ref|ZP_02231450.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166213183|ref|ZP_02239218.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004]
gi|167398768|ref|ZP_02304292.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167419139|ref|ZP_02310892.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167425700|ref|ZP_02317453.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167468246|ref|ZP_02332950.1| peptide deformylase [Yersinia pestis FV-1]
gi|170022577|ref|YP_001719082.1| peptide deformylase [Yersinia pseudotuberculosis YPIII]
gi|186897151|ref|YP_001874263.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+]
gi|218927448|ref|YP_002345323.1| peptide deformylase [Yersinia pestis CO92]
gi|229836276|ref|ZP_04456443.1| peptide deformylase [Yersinia pestis Pestoides A]
gi|229840100|ref|ZP_04460259.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842182|ref|ZP_04462337.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India
195]
gi|229904518|ref|ZP_04519629.1| peptide deformylase [Yersinia pestis Nepal516]
gi|270488264|ref|ZP_06205338.1| peptide deformylase [Yersinia pestis KIM D27]
gi|294502316|ref|YP_003566378.1| peptide deformylase [Yersinia pestis Z176003]
gi|384120800|ref|YP_005503420.1| peptide deformylase [Yersinia pestis D106004]
gi|384124682|ref|YP_005507296.1| peptide deformylase [Yersinia pestis D182038]
gi|384137781|ref|YP_005520483.1| peptide deformylase [Yersinia pestis A1122]
gi|384412871|ref|YP_005622233.1| peptide deformylase [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|420544665|ref|ZP_15042871.1| peptide deformylase [Yersinia pestis PY-01]
gi|420549968|ref|ZP_15047614.1| peptide deformylase [Yersinia pestis PY-02]
gi|420555425|ref|ZP_15052469.1| peptide deformylase [Yersinia pestis PY-03]
gi|420561071|ref|ZP_15057382.1| peptide deformylase [Yersinia pestis PY-04]
gi|420566106|ref|ZP_15061923.1| peptide deformylase [Yersinia pestis PY-05]
gi|420571723|ref|ZP_15067024.1| peptide deformylase [Yersinia pestis PY-06]
gi|420577065|ref|ZP_15071852.1| peptide deformylase [Yersinia pestis PY-07]
gi|420582427|ref|ZP_15076738.1| peptide deformylase [Yersinia pestis PY-08]
gi|420587558|ref|ZP_15081376.1| peptide deformylase [Yersinia pestis PY-09]
gi|420592861|ref|ZP_15086145.1| peptide deformylase [Yersinia pestis PY-10]
gi|420598540|ref|ZP_15091236.1| peptide deformylase [Yersinia pestis PY-11]
gi|420604097|ref|ZP_15096183.1| peptide deformylase [Yersinia pestis PY-12]
gi|420609428|ref|ZP_15101028.1| peptide deformylase [Yersinia pestis PY-13]
gi|420614677|ref|ZP_15105712.1| peptide deformylase [Yersinia pestis PY-14]
gi|420620108|ref|ZP_15110440.1| peptide deformylase [Yersinia pestis PY-15]
gi|420625173|ref|ZP_15115027.1| peptide deformylase [Yersinia pestis PY-16]
gi|420630339|ref|ZP_15119722.1| peptide deformylase [Yersinia pestis PY-19]
gi|420635469|ref|ZP_15124308.1| peptide deformylase [Yersinia pestis PY-25]
gi|420641078|ref|ZP_15129362.1| peptide deformylase [Yersinia pestis PY-29]
gi|420646226|ref|ZP_15134088.1| peptide deformylase [Yersinia pestis PY-32]
gi|420651859|ref|ZP_15139131.1| peptide deformylase [Yersinia pestis PY-34]
gi|420657292|ref|ZP_15144038.1| peptide deformylase [Yersinia pestis PY-36]
gi|420662640|ref|ZP_15148808.1| peptide deformylase [Yersinia pestis PY-42]
gi|420667642|ref|ZP_15153329.1| peptide deformylase [Yersinia pestis PY-45]
gi|420672964|ref|ZP_15158169.1| peptide deformylase [Yersinia pestis PY-46]
gi|420678459|ref|ZP_15163172.1| peptide deformylase [Yersinia pestis PY-47]
gi|420683689|ref|ZP_15167874.1| peptide deformylase [Yersinia pestis PY-48]
gi|420688856|ref|ZP_15172467.1| peptide deformylase [Yersinia pestis PY-52]
gi|420694665|ref|ZP_15177554.1| peptide deformylase [Yersinia pestis PY-53]
gi|420699901|ref|ZP_15182141.1| peptide deformylase [Yersinia pestis PY-54]
gi|420706072|ref|ZP_15187008.1| peptide deformylase [Yersinia pestis PY-55]
gi|420711364|ref|ZP_15191817.1| peptide deformylase [Yersinia pestis PY-56]
gi|420716726|ref|ZP_15196575.1| peptide deformylase [Yersinia pestis PY-58]
gi|420722377|ref|ZP_15201382.1| peptide deformylase [Yersinia pestis PY-59]
gi|420728002|ref|ZP_15206375.1| peptide deformylase [Yersinia pestis PY-60]
gi|420733129|ref|ZP_15210993.1| peptide deformylase [Yersinia pestis PY-61]
gi|420738591|ref|ZP_15215929.1| peptide deformylase [Yersinia pestis PY-63]
gi|420743832|ref|ZP_15220625.1| peptide deformylase [Yersinia pestis PY-64]
gi|420749715|ref|ZP_15225558.1| peptide deformylase [Yersinia pestis PY-65]
gi|420754757|ref|ZP_15230089.1| peptide deformylase [Yersinia pestis PY-66]
gi|420760890|ref|ZP_15234949.1| peptide deformylase [Yersinia pestis PY-71]
gi|420766046|ref|ZP_15239619.1| peptide deformylase [Yersinia pestis PY-72]
gi|420771082|ref|ZP_15244124.1| peptide deformylase [Yersinia pestis PY-76]
gi|420776438|ref|ZP_15248961.1| peptide deformylase [Yersinia pestis PY-88]
gi|420781885|ref|ZP_15253741.1| peptide deformylase [Yersinia pestis PY-89]
gi|420787342|ref|ZP_15258518.1| peptide deformylase [Yersinia pestis PY-90]
gi|420792786|ref|ZP_15263425.1| peptide deformylase [Yersinia pestis PY-91]
gi|420797916|ref|ZP_15268030.1| peptide deformylase [Yersinia pestis PY-92]
gi|420803310|ref|ZP_15272886.1| peptide deformylase [Yersinia pestis PY-93]
gi|420808469|ref|ZP_15277557.1| peptide deformylase [Yersinia pestis PY-94]
gi|420814288|ref|ZP_15282761.1| peptide deformylase [Yersinia pestis PY-95]
gi|420819408|ref|ZP_15287413.1| peptide deformylase [Yersinia pestis PY-96]
gi|420824503|ref|ZP_15291963.1| peptide deformylase [Yersinia pestis PY-98]
gi|420830313|ref|ZP_15297212.1| peptide deformylase [Yersinia pestis PY-99]
gi|420835136|ref|ZP_15301559.1| peptide deformylase [Yersinia pestis PY-100]
gi|420840262|ref|ZP_15306203.1| peptide deformylase [Yersinia pestis PY-101]
gi|420845875|ref|ZP_15311285.1| peptide deformylase [Yersinia pestis PY-102]
gi|420851198|ref|ZP_15316047.1| peptide deformylase [Yersinia pestis PY-103]
gi|420856802|ref|ZP_15320757.1| peptide deformylase [Yersinia pestis PY-113]
gi|421761666|ref|ZP_16198466.1| peptide deformylase [Yersinia pestis INS]
gi|23396545|sp|Q8ZJ79.1|DEF_YERPE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|81691640|sp|Q664V4.1|DEF_YERPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123073067|sp|Q1CCX6.1|DEF_YERPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123372104|sp|Q1C2X9.1|DEF_YERPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|158514064|sp|A4TH23.1|DEF_YERPP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|167012067|sp|A7FNK2.1|DEF_YERP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238687338|sp|A9R927.1|DEF_YERPG RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238688470|sp|B1JJH8.1|DEF_YERPY RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238691391|sp|B2K504.1|DEF_YERPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|21961030|gb|AAM87567.1|AE014004_5 peptide deformylase [Yersinia pestis KIM10+]
gi|45434955|gb|AAS60516.1| polypeptide deformylase [Yersinia pestis biovar Microtus str.
91001]
gi|51591237|emb|CAH22903.1| polypeptide deformylase [Yersinia pseudotuberculosis IP 32953]
gi|108777635|gb|ABG20154.1| peptide deformylase [Yersinia pestis Nepal516]
gi|108781135|gb|ABG15193.1| peptide deformylase [Yersinia pestis Antiqua]
gi|115346059|emb|CAL18925.1| polypeptide deformylase [Yersinia pestis CO92]
gi|145209179|gb|ABP38586.1| peptide deformylase [Yersinia pestis Pestoides F]
gi|149290118|gb|EDM40195.1| polypeptide deformylase [Yersinia pestis CA88-4125]
gi|152961585|gb|ABS49046.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758]
gi|162351076|gb|ABX85024.1| peptide deformylase [Yersinia pestis Angola]
gi|165915615|gb|EDR34224.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275]
gi|165920174|gb|EDR37475.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165990642|gb|EDR42943.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166205481|gb|EDR49961.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004]
gi|166963133|gb|EDR59154.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051272|gb|EDR62680.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167055390|gb|EDR65184.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169749111|gb|ACA66629.1| peptide deformylase [Yersinia pseudotuberculosis YPIII]
gi|186700177|gb|ACC90806.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+]
gi|229678636|gb|EEO74741.1| peptide deformylase [Yersinia pestis Nepal516]
gi|229690492|gb|EEO82546.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India
195]
gi|229696466|gb|EEO86513.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229706344|gb|EEO92351.1| peptide deformylase [Yersinia pestis Pestoides A]
gi|262360396|gb|ACY57117.1| peptide deformylase [Yersinia pestis D106004]
gi|262364346|gb|ACY60903.1| peptide deformylase [Yersinia pestis D182038]
gi|270336768|gb|EFA47545.1| peptide deformylase [Yersinia pestis KIM D27]
gi|294352775|gb|ADE63116.1| peptide deformylase [Yersinia pestis Z176003]
gi|320013375|gb|ADV96946.1| peptide deformylase [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|342852910|gb|AEL71463.1| peptide deformylase [Yersinia pestis A1122]
gi|391433126|gb|EIQ94495.1| peptide deformylase [Yersinia pestis PY-01]
gi|391434058|gb|EIQ95302.1| peptide deformylase [Yersinia pestis PY-02]
gi|391436793|gb|EIQ97718.1| peptide deformylase [Yersinia pestis PY-03]
gi|391449126|gb|EIR08875.1| peptide deformylase [Yersinia pestis PY-04]
gi|391449707|gb|EIR09405.1| peptide deformylase [Yersinia pestis PY-05]
gi|391451928|gb|EIR11384.1| peptide deformylase [Yersinia pestis PY-06]
gi|391465076|gb|EIR23299.1| peptide deformylase [Yersinia pestis PY-07]
gi|391466643|gb|EIR24699.1| peptide deformylase [Yersinia pestis PY-08]
gi|391468791|gb|EIR26633.1| peptide deformylase [Yersinia pestis PY-09]
gi|391482529|gb|EIR38971.1| peptide deformylase [Yersinia pestis PY-10]
gi|391483088|gb|EIR39483.1| peptide deformylase [Yersinia pestis PY-12]
gi|391483429|gb|EIR39788.1| peptide deformylase [Yersinia pestis PY-11]
gi|391497326|gb|EIR52196.1| peptide deformylase [Yersinia pestis PY-13]
gi|391498332|gb|EIR53113.1| peptide deformylase [Yersinia pestis PY-15]
gi|391501873|gb|EIR56233.1| peptide deformylase [Yersinia pestis PY-14]
gi|391512934|gb|EIR66206.1| peptide deformylase [Yersinia pestis PY-16]
gi|391514597|gb|EIR67689.1| peptide deformylase [Yersinia pestis PY-19]
gi|391516194|gb|EIR69111.1| peptide deformylase [Yersinia pestis PY-25]
gi|391528537|gb|EIR80342.1| peptide deformylase [Yersinia pestis PY-29]
gi|391531474|gb|EIR82966.1| peptide deformylase [Yersinia pestis PY-34]
gi|391532644|gb|EIR84005.1| peptide deformylase [Yersinia pestis PY-32]
gi|391545649|gb|EIR95715.1| peptide deformylase [Yersinia pestis PY-36]
gi|391547335|gb|EIR97239.1| peptide deformylase [Yersinia pestis PY-42]
gi|391548064|gb|EIR97900.1| peptide deformylase [Yersinia pestis PY-45]
gi|391561707|gb|EIS10213.1| peptide deformylase [Yersinia pestis PY-46]
gi|391562827|gb|EIS11205.1| peptide deformylase [Yersinia pestis PY-47]
gi|391564904|gb|EIS13064.1| peptide deformylase [Yersinia pestis PY-48]
gi|391577036|gb|EIS23509.1| peptide deformylase [Yersinia pestis PY-52]
gi|391577941|gb|EIS24282.1| peptide deformylase [Yersinia pestis PY-53]
gi|391589065|gb|EIS34006.1| peptide deformylase [Yersinia pestis PY-55]
gi|391592620|gb|EIS37016.1| peptide deformylase [Yersinia pestis PY-54]
gi|391593185|gb|EIS37517.1| peptide deformylase [Yersinia pestis PY-56]
gi|391606016|gb|EIS48798.1| peptide deformylase [Yersinia pestis PY-60]
gi|391608009|gb|EIS50547.1| peptide deformylase [Yersinia pestis PY-58]
gi|391608702|gb|EIS51167.1| peptide deformylase [Yersinia pestis PY-59]
gi|391620660|gb|EIS61793.1| peptide deformylase [Yersinia pestis PY-61]
gi|391621570|gb|EIS62598.1| peptide deformylase [Yersinia pestis PY-63]
gi|391629942|gb|EIS69784.1| peptide deformylase [Yersinia pestis PY-64]
gi|391632107|gb|EIS71672.1| peptide deformylase [Yersinia pestis PY-65]
gi|391643396|gb|EIS81573.1| peptide deformylase [Yersinia pestis PY-71]
gi|391646145|gb|EIS83936.1| peptide deformylase [Yersinia pestis PY-72]
gi|391649501|gb|EIS86882.1| peptide deformylase [Yersinia pestis PY-66]
gi|391655943|gb|EIS92626.1| peptide deformylase [Yersinia pestis PY-76]
gi|391662868|gb|EIS98766.1| peptide deformylase [Yersinia pestis PY-88]
gi|391667905|gb|EIT03184.1| peptide deformylase [Yersinia pestis PY-89]
gi|391669459|gb|EIT04589.1| peptide deformylase [Yersinia pestis PY-90]
gi|391673086|gb|EIT07841.1| peptide deformylase [Yersinia pestis PY-91]
gi|391687124|gb|EIT20470.1| peptide deformylase [Yersinia pestis PY-93]
gi|391688710|gb|EIT21905.1| peptide deformylase [Yersinia pestis PY-92]
gi|391689985|gb|EIT23061.1| peptide deformylase [Yersinia pestis PY-94]
gi|391701258|gb|EIT33282.1| peptide deformylase [Yersinia pestis PY-95]
gi|391704391|gb|EIT36053.1| peptide deformylase [Yersinia pestis PY-96]
gi|391705046|gb|EIT36646.1| peptide deformylase [Yersinia pestis PY-98]
gi|391715913|gb|EIT46412.1| peptide deformylase [Yersinia pestis PY-99]
gi|391720699|gb|EIT50699.1| peptide deformylase [Yersinia pestis PY-100]
gi|391721256|gb|EIT51210.1| peptide deformylase [Yersinia pestis PY-101]
gi|391731702|gb|EIT60371.1| peptide deformylase [Yersinia pestis PY-102]
gi|391734366|gb|EIT62629.1| peptide deformylase [Yersinia pestis PY-103]
gi|391737534|gb|EIT65411.1| peptide deformylase [Yersinia pestis PY-113]
gi|411177988|gb|EKS48000.1| peptide deformylase [Yersinia pestis INS]
Length = 170
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H+Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|374313843|ref|YP_005060272.1| polypeptide deformylase [Serratia symbiotica str. 'Cinara cedri']
gi|363988069|gb|AEW44260.1| polypeptide deformylase [Serratia symbiotica str. 'Cinara cedri']
Length = 170
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 125/166 (75%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+Y+P+ RL+KIA P+ E + N+++I+ +M +TMY GIGLAA+Q+DIH+++++
Sbjct: 1 MSVLQILYFPEYRLRKIAAPVKEVNANVQRIVDDMFDTMYSKEGIGLAATQIDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DISKN +Q QV INP+I+ S I EGCLS+P + + R+ ++V AL++ GK F
Sbjct: 61 MDISKNRDQGQVLINPEILETSGVTSI-EEGCLSIPNLRALVPRAAYVKVCALSVNGKYF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A LLAIC+QHE+DHL GK+FI+YLS K++RI +K +KN+ K
Sbjct: 120 ELEAYDLLAICIQHEMDHLIGKLFIDYLSPLKRQRIRQK-IKNMAK 164
>gi|291612480|ref|YP_003522637.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
gi|291582592|gb|ADE10250.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
Length = 167
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 120/163 (73%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPII YPD RL K+A+ + + + +K++ +M ETMY A GIGLAA+QVD H +L++
Sbjct: 1 MAILPIIQYPDERLHKVAKKVEQINEATRKLVRDMAETMYAAPGIGLAATQVDKHIRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ L+VFINP+++ +K+ EGCLS+PGI+ K+ R++ + V+AL+ GK F
Sbjct: 61 IDVSETHDDLKVFINPELVDSMGDKE-NEEGCLSVPGIYEKVTRAEFVTVNALDEHGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
+ AEGLLA+C+QHE+DHL G++F+E LS+ K+ RI K K
Sbjct: 120 TLNAEGLLAVCIQHEMDHLQGRVFVEKLSHLKQTRIRAKLKKQ 162
>gi|163867376|ref|YP_001608570.1| peptide deformylase [Bartonella tribocorum CIP 105476]
gi|189083066|sp|A9ILK4.1|DEF_BART1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|161017017|emb|CAK00575.1| polypeptide deformylase [Bartonella tribocorum CIP 105476]
Length = 178
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 118/170 (69%), Gaps = 4/170 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + ++ PD L+++++P+ + D L+++ +M ETMYHA GIGLAA Q+ I ++L+
Sbjct: 1 MPMRSLVTLPDPILREVSKPVEQVDTALQELADDMLETMYHAKGIGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ----VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIE 116
+D+S N Q V INP+I+W S E+ +Y EGCLS+P F +++R KR+RV N E
Sbjct: 61 IDVSGNAEDTQKKPLVIINPEILWLSDERNVYKEGCLSIPDYFAEVERPKRLRVRYQNRE 120
Query: 117 GKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
GK EI A+ LLA CLQHEIDHL+G++FI+Y+S K++ +I+KF K K+
Sbjct: 121 GKQKEIEADDLLATCLQHEIDHLDGRLFIDYISRIKRDMVIRKFKKRAKE 170
>gi|238898789|ref|YP_002924471.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|259645182|sp|C4K6Y0.1|DEF_HAMD5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|229466549|gb|ACQ68323.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 171
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+++PD RL+KIA P+ + D +++I +M ETMY A GIGLAA+QV+IH+++++
Sbjct: 1 MSILQILHFPDDRLRKIASPVKKMDDQIRQIADDMLETMYQAEGIGLAATQVNIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q + INP+++ S E I EGCLS+PG I R+K I + ALN EG+ F
Sbjct: 61 IDVSEDRHQPLILINPELLEKSGETGI-EEGCLSIPGEKAFIPRAKEITIQALNREGRSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+ LLAIC+QHE+DHL GK+F++YLS FK++RI KK K
Sbjct: 120 RLSADDLLAICIQHEMDHLIGKLFVDYLSPFKRQRIQKKMEK 161
>gi|170749551|ref|YP_001755811.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
gi|170656073|gb|ACB25128.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
Length = 171
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 118/168 (70%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P++ PD L+ +EP+ ++ ++ +M ETMY A G+GLAA Q+ + K+++
Sbjct: 1 MTIRPLVILPDPVLRLGSEPVGPITAEIRTLVADMFETMYDAPGVGLAAIQIGVPKRVVT 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D SK +VFINP+I+W S+EK++Y+EGCLS+P + +++R R+RV +++G
Sbjct: 61 IDTSKEEGVRDARVFINPEIVWSSEEKRVYDEGCLSIPDYYAEVERPDRVRVKFRDLDGT 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLL+ C+QHEIDHLNG +FI++LS K++R+IKKF K K+
Sbjct: 121 EREIEADGLLSTCIQHEIDHLNGVLFIDHLSKLKRDRVIKKFTKAAKR 168
>gi|325983533|ref|YP_004295935.1| peptide deformylase [Nitrosomonas sp. AL212]
gi|325533052|gb|ADZ27773.1| peptide deformylase [Nitrosomonas sp. AL212]
Length = 167
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 115/162 (70%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD +L +A P+++ ++ +I +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAILKILQYPDEKLHTVAAPVSQITDKIRTLINDMAETMYAAPGIGLAATQVDVHERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ N L V INP+I S Y EGCLS+PGI+ K++R++ ++V ALN +G+ F
Sbjct: 61 IDTSEARNDLLVLINPEIT-ASNGISDYEEGCLSVPGIYGKVQRAESVKVRALNAQGESF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLA+C+QHE+DHL GK+F+EY S K+ R + K K
Sbjct: 120 VLDADGLLAVCIQHEMDHLAGKVFVEYWSRLKQVRTLAKLKK 161
>gi|433679681|ref|ZP_20511384.1| peptide deformylase [Xanthomonas translucens pv. translucens DSM
18974]
gi|430815204|emb|CCP41987.1| peptide deformylase [Xanthomonas translucens pv. translucens DSM
18974]
Length = 170
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 118/168 (70%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A + D+ ++++ +M ETMY A GIGLAASQVD+H++
Sbjct: 1 MALLPILEFPDSRLRTKALQVDPADVTAPAFQRLLDDMFETMYEAPGIGLAASQVDVHQR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N QVFINP+I+ E Q++ EGCLS+PGI+ + R++ I V L+ G
Sbjct: 61 FMVIDVSEEKNAPQVFINPQIVQCDGE-QVHQEGCLSVPGIYADVTRAEAIVVRYLDRHG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ A+GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 RPQELSADGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLAKARK 167
>gi|407685821|ref|YP_006800994.1| peptide deformylase [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|407698284|ref|YP_006823071.1| peptide deformylase [Alteromonas macleodii str. 'Black Sea 11']
gi|407247431|gb|AFT76616.1| peptide deformylase [Alteromonas macleodii str. 'Black Sea 11']
gi|407289201|gb|AFT93513.1| peptide deformylase [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 169
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 120/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+P+ E + +K+++ +M ETM GIGLAA+QV+ H Q+++
Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+ +VFINP+II I EGCLS+PG + K++R++ I V AL+ G+ F
Sbjct: 61 MDVSEDQNEPRVFINPEIIRKDG-STISEEGCLSVPGNYAKVERAEAITVKALDQNGESF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ AEGLLAIC+QHE+DHL GK+FI+YLS K++RI KK K +
Sbjct: 120 ELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEAR 164
>gi|21244525|ref|NP_644107.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
gi|381170714|ref|ZP_09879868.1| peptide deformylase [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|39931168|sp|Q8PG20.1|DEF2_XANAC RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|21110197|gb|AAM38643.1| polypeptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
gi|380688766|emb|CCG36355.1| peptide deformylase [Xanthomonas citri pv. mangiferaeindicae LMG
941]
Length = 170
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++DIS N QVF+NP+I+ E Q+Y EGCLS+PGI+ + R+ I V L+ +G
Sbjct: 61 FMVIDISDEKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ A+GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 QPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167
>gi|291619142|ref|YP_003521884.1| Def [Pantoea ananatis LMG 20103]
gi|378765425|ref|YP_005193884.1| peptide deformylase [Pantoea ananatis LMG 5342]
gi|386017391|ref|YP_005935689.1| peptide deformylase Def [Pantoea ananatis AJ13355]
gi|386077678|ref|YP_005991203.1| peptide deformylase Def [Pantoea ananatis PA13]
gi|291154172|gb|ADD78756.1| Def [Pantoea ananatis LMG 20103]
gi|327395471|dbj|BAK12893.1| peptide deformylase Def [Pantoea ananatis AJ13355]
gi|354986859|gb|AER30983.1| peptide deformylase Def [Pantoea ananatis PA13]
gi|365184897|emb|CCF07847.1| peptide deformylase [Pantoea ananatis LMG 5342]
Length = 170
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+KIA P+ E + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRKIAAPVKEVNADVQRIVDDMFETMYSEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++R++V AL+ EGK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDREGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ LLAIC+QHEIDHL+GK+FI+YLS K++RI K K
Sbjct: 120 ELETGDLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKTKLEK 161
>gi|333374958|ref|ZP_08466788.1| peptide deformylase [Kingella kingae ATCC 23330]
gi|332974243|gb|EGK11176.1| peptide deformylase [Kingella kingae ATCC 23330]
Length = 167
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 115/162 (70%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +P+ RL +A+P+ + D ++ ++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLPILTHPNERLHIVAQPVVQVDDRIRTLVQDMAETMYAARGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +NQL INP +I + Y EGCLS+PGI++ + R+K I V L+ +G
Sbjct: 61 IDLSEEHNQLLALINP-VITKKDGETTYEEGCLSVPGIYDTVTRAKTITVEFLDTQGNKQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 120 SLDADGLLAICIQHELDHLAGKLFVEYLSPLKQNRIKTKLKK 161
>gi|150395282|ref|YP_001325749.1| peptide deformylase [Sinorhizobium medicae WSM419]
gi|150026797|gb|ABR58914.1| peptide deformylase [Sinorhizobium medicae WSM419]
Length = 174
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 117/167 (70%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++++ P+ D +++++ +M ETMY A GIGLAA Q+ + K+LL+
Sbjct: 1 MTIKPLIILPDPVLRQVSTPVETVDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD++K + Q VFINPK++ S+E+ +Y EGCLS+P + +++R I V ++ EGK
Sbjct: 61 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K++ +I+KF K K
Sbjct: 121 EQAVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAK 167
>gi|157372744|ref|YP_001480733.1| peptide deformylase [Serratia proteamaculans 568]
gi|167012065|sp|A8GKG5.1|DEF_SERP5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|157324508|gb|ABV43605.1| peptide deformylase [Serratia proteamaculans 568]
Length = 169
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+K+A P+ E + N+++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHYPDDRLRKVAAPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R+ +++ AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAAAVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|333906418|ref|YP_004480004.1| peptide deformylase [Marinomonas posidonica IVIA-Po-181]
gi|333476424|gb|AEF53085.1| Peptide deformylase [Marinomonas posidonica IVIA-Po-181]
Length = 172
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 112/162 (69%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LP++ YPD RL+KIA P+++F L+ I +M +TMY G+GLAA+QVD H ++++
Sbjct: 1 MAVLPVLEYPDPRLRKIAAPVSDFTDELQTTIDDMLDTMYDENGVGLAATQVDYHYRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ NQ VFINP+ E + EGCLS+PG + + R+ R++V AL+ GK F
Sbjct: 61 MDHSEERNQPIVFINPEFDVLDDEPNEFQEGCLSVPGFYEHLYRAARVKVKALDRHGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ + L+A+C+QHEIDHL+GK+F++YLS K+ RI K K
Sbjct: 121 EMDVDELMAVCVQHEIDHLDGKLFVDYLSPLKRNRIKSKLEK 162
>gi|238021725|ref|ZP_04602151.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147]
gi|237866339|gb|EEP67381.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147]
Length = 167
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 116/162 (71%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +P+ RL +A+P+ + D ++ ++ +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 1 MALLPILTHPNERLHIVAQPVAQVDERIRTLVQDMAETMYASKGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQL INP +I + Y EGCLS+PGI+ ++ R++ I V L+I+G
Sbjct: 61 IDLSEEKNQLLALINP-VITKKDGETTYEEGCLSVPGIYEEVTRAETITVEFLDIQGNKQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHE+DHLNGK+F+EYLS K+ RI K K
Sbjct: 120 TLDADGLLAICVQHELDHLNGKLFVEYLSPLKQNRIKTKMKK 161
>gi|372267039|ref|ZP_09503087.1| peptide deformylase [Alteromonas sp. S89]
Length = 168
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 118/162 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+K+AEP+ E + + +I M ETMY A G+GLAA+Q+++H+++++
Sbjct: 1 MAKLEILEFPDPRLRKVAEPVAEVTDDHRTLIEAMFETMYEAPGVGLAATQINVHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ V INP++ E Y+EGCLS+PG + K++R ++IR+ AL+ G+ +
Sbjct: 61 IDVSEDQSEPLVLINPEVEVLDPEIHKYDEGCLSVPGFYEKVERPRKIRLKALDRNGETY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ AEGLLA+C+QHEIDHL+GK+F++Y+S K+ RI K K
Sbjct: 121 ALEAEGLLAVCIQHEIDHLDGKLFVDYISPLKRNRIRSKLEK 162
>gi|407784414|ref|ZP_11131563.1| peptide deformylase [Celeribacter baekdonensis B30]
gi|407204116|gb|EKE74097.1| peptide deformylase [Celeribacter baekdonensis B30]
Length = 197
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 111/165 (67%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MTL PI+ +PD RLKK+ +P+TEFD +L + +M +TMY A GIGLAA QV + K++L+
Sbjct: 25 MTLKPILIHPDPRLKKVCDPVTEFDRDLARFADDMLQTMYEAPGIGLAAPQVGLTKRMLV 84
Query: 61 LDISKNNN---QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D K + + V +NP + W S EK +Y EGCLS+PG + ++R K +RV L++EG
Sbjct: 85 MDCVKEASGTPEPMVMVNPAVTWSSDEKNVYEEGCLSIPGQYADVERPKMVRVSWLDVEG 144
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
K E + L A C+QHEIDHL+G +FI+YL K++ I +K K
Sbjct: 145 KAHEEEFDALWATCVQHEIDHLDGILFIDYLKPLKRQMITRKMQK 189
>gi|437999593|ref|YP_007183326.1| peptide deformylase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813214|ref|YP_007449667.1| peptide deformylase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429338827|gb|AFZ83249.1| peptide deformylase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779183|gb|AGF50063.1| peptide deformylase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 177
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL II YPD RL+ IA P+ D ++ II++M ETMY++ GIGLAA+QV+I +++++
Sbjct: 1 MALLNIINYPDNRLRNIANPVPVVDQRVRGIIYDMLETMYNSEGIGLAATQVNIQERIIV 60
Query: 61 LDI-SKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+DI + INP+IIW S E I NEGCLS+PGI+++++R I A++ +G +
Sbjct: 61 IDIYGSGGSDFIALINPEIIWRSSEMYIDNEGCLSIPGIYDRVERCSEIVYVAMDKDGNI 120
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A GLLA C+QHEIDHLNGK+FIEYLS+ K+ RI K+ K+ K
Sbjct: 121 AEHRANGLLARCIQHEIDHLNGKLFIEYLSSLKQNRIRSKYRKSKTK 167
>gi|453066261|gb|EMF07210.1| peptide deformylase [Serratia marcescens VGH107]
Length = 169
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+K+A P+ E + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R+ ++++ AL+ EGK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAAQVKIRALDREGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|451812491|ref|YP_007448945.1| peptide deformylase [Candidatus Kinetoplastibacterium galatii
TCC219]
gi|451778393|gb|AGF49341.1| peptide deformylase [Candidatus Kinetoplastibacterium galatii
TCC219]
Length = 178
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 122/167 (73%), Gaps = 1/167 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL IA+P++ D ++ II++M ETMY++ GIGLAA+QV+I +++++
Sbjct: 1 MALLNILNYPDKRLYNIAKPVSVVDSRVRDIIYDMLETMYNSDGIGLAATQVNIQERIVV 60
Query: 61 LDISKNN-NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+DI+ +N + INP+IIW S E QI NEGCLS+PGI++K++R I A++ +G
Sbjct: 61 IDINNSNGSDFISLINPEIIWRSNEVQIDNEGCLSVPGIYDKVERFSEIVCVAMDKDGNK 120
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+GL A C+QHEIDHL+GK+F+EYLS+FK++RI + K+ K
Sbjct: 121 VKYHADGLFARCIQHEIDHLDGKLFVEYLSSFKQDRIRSRCKKSKTK 167
>gi|121999101|ref|YP_001003888.1| peptide deformylase [Halorhodospira halophila SL1]
gi|121590506|gb|ABM63086.1| peptide deformylase [Halorhodospira halophila SL1]
Length = 169
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL++ AEP+ E D +++++ +M ETMY A GIGLAA+QV +++ +
Sbjct: 1 MALLDILVYPDPRLRERAEPVAEVDDAVRRLVDDMLETMYEARGIGLAATQVGDRRRVAV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP+I+ + E EGCLS+PG ++ + R+ R+R AL+ + +
Sbjct: 61 IDVSEERDEPLVLINPEILEATGEAS-GEEGCLSIPGYYDDVARATRVRYRALDRDAQPI 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E AEG LA+CLQHEIDHL+G++FI+YLS K++R+ K+ K
Sbjct: 120 EGEAEGTLAVCLQHEIDHLDGRLFIDYLSELKRKRVRKRMEKR 162
>gi|406941862|gb|EKD74236.1| peptide deformylase [uncultured bacterium]
Length = 167
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+Y+P L KIAEP+TEF+ LKK+I +M ETMYHA GIGLAA QV I K+L +
Sbjct: 1 MALLTIVYHPHPVLHKIAEPVTEFNDTLKKLIQDMYETMYHAEGIGLAAPQVAIAKRLAV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ NQ INP+II + +++ GCLS+P ++K+ R+ +++V A N GK F
Sbjct: 61 IDISEERNQPFCIINPEIIV-KEGQEMMEAGCLSVPHTYDKVPRATKVKVRAQNETGKFF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLL CLQHEIDHL+GK++I+YLS K+ +IKK K ++
Sbjct: 120 EMEGDGLLGHCLQHEIDHLDGKLYIDYLSPLKRSLLIKKMQKYLR 164
>gi|386289394|ref|ZP_10066524.1| peptide deformylase [gamma proteobacterium BDW918]
gi|385277457|gb|EIF41439.1| peptide deformylase [gamma proteobacterium BDW918]
Length = 172
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 117/162 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+ D ++K+I +M +TMY A GIGLAASQV++H+Q+++
Sbjct: 1 MAVLEILEFPDPRLRTVAKPVKIVDDRVRKLIDDMFDTMYEAPGIGLAASQVNVHEQIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ ++ VFINP+I + Y+EGCLS+PG + ++R + IRV AL+ G F
Sbjct: 61 IDISEDRSEPLVFINPEISVLDHDTFQYDEGCLSVPGFYETVERPQHIRVKALDRNGDAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ EGLLA+C+QHE DHL GK+F++Y+S K+ RI K +K
Sbjct: 121 EMTPEGLLAVCIQHENDHLLGKLFVDYISPLKRNRIRGKMVK 162
>gi|424793181|ref|ZP_18219325.1| Peptide deformylase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422796755|gb|EKU25209.1| Peptide deformylase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 170
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 118/168 (70%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A + D+ ++++ +M ETMY A GIGLAASQVD+H++
Sbjct: 1 MALLPILEFPDPRLRTKALQVDPADVTAPAFQRLLDDMFETMYEAPGIGLAASQVDVHQR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ + QVFINP+I+ E Q++ EGCLS+PGI+ + R++ I V L+ G
Sbjct: 61 FMVIDVSEEKDAPQVFINPQIVQRDGE-QVHQEGCLSVPGIYADVTRAETIVVRYLDRHG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ A+GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 RPQELSADGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLAKARK 167
>gi|339061845|ref|ZP_08649045.1| Peptide deformylase [gamma proteobacterium IMCC2047]
gi|330720123|gb|EGG98527.1| Peptide deformylase [gamma proteobacterium IMCC2047]
Length = 168
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 118/162 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ A PI + D +++K+ +M ETMY+A GIGLAA+QV++ K++++
Sbjct: 1 MALLPILEFPDPRLRNKALPINDVDDSIRKLADDMLETMYYAPGIGLAATQVNVQKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q VFINP++ + +EGCLS+PG + ++R I+V A + G+ F
Sbjct: 61 IDVSEDKSQPLVFINPEVEVIGDGFEEMDEGCLSVPGFYETVQRPDHIKVRAQDRNGETF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI +G+LA+C+QHEIDHL+GK+F++YLS K++RI KK K
Sbjct: 121 EIEDDGMLAVCIQHEIDHLDGKLFVDYLSPLKRQRIRKKLEK 162
>gi|257091704|ref|YP_003165345.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257044228|gb|ACV33416.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 167
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 116/165 (70%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LLPI+ +PD RL+K+A + + D ++++ +M ETMY A GIGLAA+QVD+H ++++
Sbjct: 1 MSLLPILRFPDPRLRKVAARVDKIDDGIRRLARDMAETMYEAPGIGLAATQVDVHARVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ +QL INP+I+ Q+ EGCLS+PG+++K++R++ + V +++G
Sbjct: 61 VDASETRDQLLTLINPEILQQDG-LQVCEEGCLSVPGVYDKVERAEHVVVRYQDLDGAEQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A GLLA+CLQHEIDHL G++F+E+LS K+ RI K K +
Sbjct: 120 TVDATGLLAVCLQHEIDHLQGRVFVEHLSQLKQLRIRNKLAKQAR 164
>gi|448244227|ref|YP_007408280.1| peptide deformylase [Serratia marcescens WW4]
gi|445214591|gb|AGE20261.1| peptide deformylase [Serratia marcescens WW4]
Length = 169
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+K+A P+ E + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R+ ++++ AL+ EGK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAAQVKIRALDREGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|397163107|ref|ZP_10486572.1| peptide deformylase [Enterobacter radicincitans DSM 16656]
gi|396095254|gb|EJI92799.1| peptide deformylase [Enterobacter radicincitans DSM 16656]
Length = 169
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+AEP+ E + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLHVLHIPDERLRKVAEPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDEQLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKTF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEK 161
>gi|332139430|ref|YP_004425168.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
gi|410859674|ref|YP_006974908.1| peptide deformylase [Alteromonas macleodii AltDE1]
gi|238693290|sp|B4S291.1|DEF_ALTMD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|327549452|gb|AEA96170.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
gi|410816936|gb|AFV83553.1| peptide deformylase [Alteromonas macleodii AltDE1]
Length = 169
Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 119/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+P+ E + +K+++ +M ETM GIGLAA+QV+ H Q+++
Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+ +VFINP+I I EGCLS+PG + K++R++ I V AL+ G+ F
Sbjct: 61 MDVSEDQNEPRVFINPEITRKDG-STISEEGCLSVPGNYAKVERAEAITVKALDQNGEAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ AEGLLAIC+QHE+DHL GK+FI+YLS K++RI KK K +
Sbjct: 120 ELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEAR 164
>gi|418938199|ref|ZP_13491761.1| Peptide deformylase [Rhizobium sp. PDO1-076]
gi|375055200|gb|EHS51473.1| Peptide deformylase [Rhizobium sp. PDO1-076]
Length = 170
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 118/167 (70%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D +++++ +M ETMY A GIGLAA QV + +++L+
Sbjct: 1 MTIKPLIILPDPLLRQVSQPIERVDADIRRLAEDMLETMYEAPGIGLAAIQVGVARRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DISK ++ + VFINP+I+ S E+ +Y EGCLS+P + +++R I V +L+ EG+
Sbjct: 61 IDISKEGDEREPLVFINPEIVRSSDERSVYEEGCLSIPDYYAEVERPAAITVKSLDREGR 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
A+GLLA CLQHEIDHLNG +FI+++S K+E +IKKF K K
Sbjct: 121 ETLTEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKASK 167
>gi|383318247|ref|YP_005379089.1| peptide deformylase [Frateuria aurantia DSM 6220]
gi|379045351|gb|AFC87407.1| peptide deformylase [Frateuria aurantia DSM 6220]
Length = 168
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L I+ +PD RL+ A +T FD +L++++ +M ETMY A G+GLAA+QV++H+Q+L+
Sbjct: 1 MTTLDILQFPDPRLRTKAAEVTRFDADLRQLVEDMYETMYAANGVGLAATQVNVHQQVLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
D+S++ INP+I+ E Q+Y EGCLS PGIF + R+ + V A++++GK
Sbjct: 61 ADMSEDREAPMALINPRIVAREGE-QVYQEGCLSFPGIFADVTRALAVTVEAVDVDGKPL 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ +G LA+C+QHE+DHL GK+F+++LS K+ ++K+ K K
Sbjct: 120 RVDVDGPLAVCIQHEMDHLAGKVFVDHLSGLKRSILLKRLEKQRK 164
>gi|307943158|ref|ZP_07658503.1| peptide deformylase [Roseibium sp. TrichSKD4]
gi|307773954|gb|EFO33170.1| peptide deformylase [Roseibium sp. TrichSKD4]
Length = 196
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 114/164 (69%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT I+ PD +L+++ P+ D ++K + +M ETMY A GIGLAASQ+ + K+L +
Sbjct: 23 MTKRSILTIPDAQLREVCAPVETVDADIKALADDMFETMYAAPGIGLAASQIGVLKRLFV 82
Query: 61 LDISKNN--NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD++K + VFINPKI+W S++ +Y EGCLS+P + I+R ++RV LN +G
Sbjct: 83 LDVAKEDAPKDPMVFINPKIVWSSEDTSVYQEGCLSIPDYYEDIERPAKVRVQFLNRDGA 142
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLA C+QHE+DHL G++FI+YLS K++R++KKF K
Sbjct: 143 EQEMEADGLLATCIQHELDHLYGRLFIDYLSKLKRDRVMKKFNK 186
>gi|405377555|ref|ZP_11031496.1| peptide deformylase [Rhizobium sp. CF142]
gi|397325992|gb|EJJ30316.1| peptide deformylase [Rhizobium sp. CF142]
Length = 171
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 118/167 (70%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D +L+++ +M ETMY A GIGLAA QV + +++L+
Sbjct: 1 MTIKPLIILPDPVLRQVSKPIERVDADLQRLTDDMLETMYDAPGIGLAAIQVGVPRRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+SK + Q VFINP+I+ S ++ +Y EGCLS+P + +++R ++ V L+ EGK
Sbjct: 61 IDLSKEGEEKQPLVFINPEIVSSSDDRSVYEEGCLSIPDYYAEVERPAKVTVKYLDREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K+E +IKKF K K
Sbjct: 121 EQSVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167
>gi|284006131|emb|CBA71372.1| polypeptide deformylase [Arsenophonus nasoniae]
Length = 171
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I++YPD RL+KIAEP+ + D +++I+ +M ETMY GIGLAA+QV+IH+++++
Sbjct: 1 MSVLNILHYPDERLRKIAEPVKKVDAEIQRIVNDMFETMYEEEGIGLAATQVNIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+ V INP I+ S E I EGCLS+P + R+K +++ AL++ GK F
Sbjct: 61 IDVSESRNERLVLINPVILETSGETGI-EEGCLSVPEQRAFVPRAKWVKIKALDVNGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ + LLAIC+QHEIDHLNGK+FI+YLS K++RI +K K
Sbjct: 120 ELETDDLLAICIQHEIDHLNGKLFIDYLSALKRQRIRQKIEK 161
>gi|119943871|ref|YP_941551.1| peptide deformylase [Psychromonas ingrahamii 37]
gi|119862475|gb|ABM01952.1| peptide deformylase [Psychromonas ingrahamii 37]
Length = 167
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 116/162 (71%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ IA+P+ + + LKK NM ETMY G+GLAA+QV+ H++L++
Sbjct: 1 MALLEVLRFPDKRLRTIAKPVEQITVELKKTAENMIETMYEEEGVGLAATQVNFHRRLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ V INP I+ +S E +I EGCLS+P ++KR++ + + L+IEGK
Sbjct: 61 IDVSEQRNQAMVIINPVIVEHSGE-EISEEGCLSVPETNAEVKRAEFVTLEYLDIEGKQQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLA+CLQHEIDHLNGK+FI+YLS K++RI K K
Sbjct: 120 VLKADGLLAVCLQHEIDHLNGKLFIDYLSPLKQKRIKTKLEK 161
>gi|378580949|ref|ZP_09829601.1| peptide deformylase [Pantoea stewartii subsp. stewartii DC283]
gi|377816428|gb|EHT99531.1| peptide deformylase [Pantoea stewartii subsp. stewartii DC283]
Length = 170
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRKIAAPVKEVNAEVQRIVDDMFETMYSEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++R++V AL+ EGK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDREGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ LLAIC+QHEIDHL+GK+FI+YLS K++RI K K
Sbjct: 120 ELETGDLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKTKLEK 161
>gi|149375618|ref|ZP_01893387.1| polypeptide deformylase [Marinobacter algicola DG893]
gi|149360020|gb|EDM48475.1| polypeptide deformylase [Marinobacter algicola DG893]
Length = 167
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 118/164 (71%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILD 62
+L I+ YPD RL+ IA+P+ E +K+I +M ETMY A GIGLAA+QV++HKQ++++D
Sbjct: 2 ILDILEYPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVMD 61
Query: 63 ISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+S++ ++ +VFINP++ E + EGCLS+PG + + R + + A+ +GK FEI
Sbjct: 62 LSEDKSEPRVFINPEVEVLEGELEEMQEGCLSVPGFYEDVSRIEHCMIRAIGRDGKPFEI 121
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A GLLA+C+QHE+DHLNGK+F++YLS+ K+ RI KK K KK
Sbjct: 122 EARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLHKK 165
>gi|423110640|ref|ZP_17098335.1| peptide deformylase [Klebsiella oxytoca 10-5243]
gi|423116638|ref|ZP_17104329.1| peptide deformylase [Klebsiella oxytoca 10-5245]
gi|376377606|gb|EHS90374.1| peptide deformylase [Klebsiella oxytoca 10-5245]
gi|376378704|gb|EHS91462.1| peptide deformylase [Klebsiella oxytoca 10-5243]
Length = 169
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ EGK F
Sbjct: 61 IDVSENRDEQLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|289664808|ref|ZP_06486389.1| peptide deformylase [Xanthomonas campestris pv. vasculorum NCPPB
702]
gi|289667878|ref|ZP_06488953.1| peptide deformylase [Xanthomonas campestris pv. musacearum NCPPB
4381]
Length = 170
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAELTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S N QVF+NP+I+ E Q+Y EGCLS+PGI+ + R+ I V L+ +G
Sbjct: 61 FMVIDVSDEKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ +GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 QPQELHTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167
>gi|394990079|ref|ZP_10382911.1| peptide deformylase [Sulfuricella denitrificans skB26]
gi|393790344|dbj|GAB72550.1| peptide deformylase [Sulfuricella denitrificans skB26]
Length = 167
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 124/165 (75%), Gaps = 4/165 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L II+YPD RL +A P+ E + ++++ +M ETMY A GIGLAA+QV++HKQ+++
Sbjct: 1 MAILNIIHYPDERLHTVATPVVEVNEEIRRLASDMAETMYAAPGIGLAATQVNVHKQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ N+LQVFINP+II S+ K + EGCLS+PGI+ + R++R+ V AL++EGK F
Sbjct: 61 VDISEERNRLQVFINPEIIA-SEGKIEHEEGCLSVPGIYENVTRAERVTVKALDVEGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI---IKKFLK 162
+ +GLLAIC+QHEIDHL GK+F+EYLS K RI +KK ++
Sbjct: 120 TLKVDGLLAICIQHEIDHLKGKVFVEYLSRLKLNRIRLKMKKLMR 164
>gi|119475268|ref|ZP_01615621.1| peptide deformylase [marine gamma proteobacterium HTCC2143]
gi|119451471|gb|EAW32704.1| peptide deformylase [marine gamma proteobacterium HTCC2143]
Length = 168
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 118/166 (71%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+L I+ +PD RL+ IA+ + D +++ ++ +M TMY A GIGLAA+Q++IH+++++
Sbjct: 1 MTILQILEFPDPRLRTIAKTVDTVDESIRTLLDDMLVTMYDASGIGLAATQINIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q QVFINP+II Y EGCLS+PG + R ++I V AL+ +G F
Sbjct: 61 IDVSETGDQPQVFINPEIIILDGPDHEYEEGCLSVPGFHETVSRPEKIIVKALDRDGNPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ EGLLA+C+QHE+DHLNGK+F++++S K++RI K K K+
Sbjct: 121 ELQPEGLLAVCIQHEVDHLNGKLFVDHISQLKRKRIRAKLEKQHKQ 166
>gi|451936722|ref|YP_007460576.1| peptide deformylase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777645|gb|AGF48620.1| peptide deformylase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 177
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 119/163 (73%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL IA+P++ D ++ II++M +TM+++ GIGLAA+QV+I +++++
Sbjct: 1 MALLNILNYPDKRLHNIAKPVSVVDSRVRGIIYDMLDTMHNSEGIGLAATQVNIQERIIV 60
Query: 61 LDISKN-NNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+DI++N N+ INP+IIW S + + NEGCLS+PGI++K++R I AL+
Sbjct: 61 IDINENENSNCITLINPEIIWRSDKLETDNEGCLSVPGIYDKVERYSEIVCVALDKNSNK 120
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GL A C+QHEIDHLNGK+F+EYLSNFK++RI ++ K
Sbjct: 121 IEYRADGLFARCIQHEIDHLNGKLFVEYLSNFKQDRIRSRYKK 163
>gi|238754205|ref|ZP_04615563.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
gi|238707701|gb|EEQ00061.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
Length = 170
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+K+A P+ E + +++I+ +M +TMY GIGLAA+QVDIH+Q+++
Sbjct: 1 MSVLQVLHYPDERLRKVATPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R+++I++ AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKIKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLDK 161
>gi|87121016|ref|ZP_01076908.1| peptide deformylase [Marinomonas sp. MED121]
gi|86163854|gb|EAQ65127.1| peptide deformylase [Marinomonas sp. MED121]
Length = 169
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 112/166 (67%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LP++ YPD RL+ +A+P+T+F+ L+ I +M ETMY G+GLAA+QVD H++L++
Sbjct: 1 MAVLPVLEYPDPRLRTVAKPVTDFNDALQVKIDDMLETMYDQNGLGLAATQVDFHQRLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ N VFINP+ EGCLS+PG + I R+ R++V AL+ G F
Sbjct: 61 MDFSEEKNDPMVFINPRFEVLDDAANEEQEGCLSVPGFYEHIYRAARVKVIALDRNGNEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E GLLA+C+QHEIDHL+GK+ ++YLS K+ RI K +KN K+
Sbjct: 121 EKKVAGLLAVCVQHEIDHLDGKLMVDYLSPLKRNRIKTKLVKNQKR 166
>gi|240122199|ref|ZP_04735161.1| peptide deformylase [Neisseria gonorrhoeae PID24-1]
gi|254494753|ref|ZP_05107924.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
gi|268600061|ref|ZP_06134228.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
gi|268683213|ref|ZP_06150075.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
gi|226513793|gb|EEH63138.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
gi|268584192|gb|EEZ48868.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
gi|268623497|gb|EEZ55897.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
Length = 161
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 7 IYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKN 66
+ YPD RL +A+P+ + D ++K++ +M ETMY + GIGLAA+QVD+H++++++D++++
Sbjct: 1 MQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVVMDLTED 60
Query: 67 NNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEG 126
++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F + A+G
Sbjct: 61 RSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKFTLEADG 119
Query: 127 LLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
LLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 LLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 158
>gi|372275655|ref|ZP_09511691.1| peptide deformylase [Pantoea sp. SL1_M5]
gi|390436443|ref|ZP_10224981.1| peptide deformylase [Pantoea agglomerans IG1]
Length = 170
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+K+A P+ E + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + V INP+++ S E I EGCLS+P + R++R++V AL+ EGK F
Sbjct: 61 IDVSESREERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDREGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A LLAIC+QHEIDHL GK+FI+YLS K++RI K K
Sbjct: 120 ELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKNKLEK 161
>gi|344339702|ref|ZP_08770630.1| Peptide deformylase [Thiocapsa marina 5811]
gi|343800438|gb|EGV18384.1| Peptide deformylase [Thiocapsa marina 5811]
Length = 177
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 120/163 (73%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL++ A P+ D + +++ +M ETMY A GIGLAA QV++ +++++
Sbjct: 1 MAKLDILTFPDPRLRRKAIPVARVDADTVRLVDDMLETMYAAPGIGLAAIQVNVPRRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++++ INP+I+ E+Q+ +EGCLS+PG F +KR++R+RV AL+ EGK F
Sbjct: 61 IDVSESHDAPLCLINPEILSREGEEQM-DEGCLSVPGFFETVKRAERVRVQALDREGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
+ A+GLLA+C+QHEIDHL+GK+F++++S K++RI +K K
Sbjct: 120 TLDADGLLAVCIQHEIDHLDGKLFVDHISMLKRQRIRRKLEKE 162
>gi|340000946|ref|YP_004731830.1| polypeptide deformylase [Salmonella bongori NCTC 12419]
gi|339514308|emb|CCC32071.1| polypeptide deformylase [Salmonella bongori NCTC 12419]
Length = 169
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ EGK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|90415408|ref|ZP_01223342.1| polypeptide deformylase [gamma proteobacterium HTCC2207]
gi|90332731|gb|EAS47901.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207]
Length = 168
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 116/162 (71%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+ E D +K++I +M +TM A GIGLAA+Q+D+H ++++
Sbjct: 1 MAILKILEFPDPRLRTVAKPVAEVDETIKRLIADMFDTMKDAQGIGLAATQIDVHLRVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+++ +++ +VFINP+I + Y EGCLS+PG + K+ R + + AL+ EGK F
Sbjct: 61 MNLGEDDIGPRVFINPEIEPLDESVDPYEEGCLSVPGFYEKVDRPAHVVIRALDGEGKAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A GLLA+C+QHEIDHL GK+F++YLS FK++RI KK K
Sbjct: 121 KEEARGLLAVCIQHEIDHLEGKLFVDYLSPFKRQRIRKKLEK 162
>gi|377579901|ref|ZP_09808859.1| peptide deformylase [Escherichia hermannii NBRC 105704]
gi|377538768|dbj|GAB54024.1| peptide deformylase [Escherichia hermannii NBRC 105704]
Length = 168
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+AEP+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ E I EGCLS+P + R++R+++ AL+ +GK +
Sbjct: 61 IDVSENRDERLVLINPELLEKEGETGI-EEGCLSIPEQRALVPRAERVKIRALDRDGKSY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEK 161
>gi|320539229|ref|ZP_08038900.1| peptide deformylase [Serratia symbiotica str. Tucson]
gi|320030867|gb|EFW12875.1| peptide deformylase [Serratia symbiotica str. Tucson]
Length = 169
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+KIA P+ E + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDDRLRKIAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS N +Q V INP+++ S E I EGCLSLP + R+ +++ AL+ +GK F
Sbjct: 61 IDISNNRDQRLVLINPELLEKSGETGI-EEGCLSLPEQRALVPRAANVKIRALDFDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|53803080|ref|YP_115237.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
gi|53756841|gb|AAU91132.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
Length = 178
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+L I+ +PD RL+K A P+ FD L++ + +M ETMY A G+GLAA+QV++HK++L+
Sbjct: 1 MTILSILEFPDERLRKKAAPVEVFDDTLRRTVDDMFETMYAAPGVGLAATQVNVHKRILV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + INP+++ ++ EGCLS+PGIF K+ R++ +RV A + G+ F
Sbjct: 61 IDVSEEKDAPLCLINPELLEKQGNGEM-EEGCLSVPGIFEKVPRAESVRVRAQDRNGEFF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ AEGLLA+C+QHE+DHL GK+F+++LS K++ KK K
Sbjct: 120 EMSAEGLLAVCIQHEMDHLEGKLFLDHLSTLKRQMARKKLQKE 162
>gi|392547672|ref|ZP_10294809.1| N-terminal methionine peptide deformylase [Pseudoalteromonas rubra
ATCC 29570]
Length = 169
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ +A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAKLAVLSFPDERLRTVAKPVAEVNDEIRQIVADMLETMYEENGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ +V INP+II I EGCLS+P + K+ R++ + V ALN G+ +
Sbjct: 61 IDVSEERDEPRVLINPEIIAKDG-STISEEGCLSVPYSYAKVDRAETVTVKALNEHGESY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E A+GLLA+C+QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 EFDADGLLAVCVQHELDHLQGKLFIDYLSPLKRQRIRKKIEKEAK 164
>gi|328545268|ref|YP_004305377.1| peptide deformylase 1 [Polymorphum gilvum SL003B-26A1]
gi|326415010|gb|ADZ72073.1| Peptide deformylase 1 [Polymorphum gilvum SL003B-26A1]
Length = 172
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT I+ PD L++ EP+ + D ++K+ +M ETMY A GIGLAASQ+ + K+L +
Sbjct: 1 MTKRDILIIPDPVLRQHCEPVVKVDDAIRKLADDMLETMYAAPGIGLAASQIGVLKRLFV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD++K + VFINP+I+W S+E +Y EGCLS+P + +++R +RV N +G
Sbjct: 61 LDVAKEDQPRAPMVFINPEIVWASEEMSVYQEGCLSIPEYYEEVERPASVRVRFFNRDGD 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLA C+QHE DHLNG++FI+YLS K++R++KKF K +
Sbjct: 121 EQELQADGLLATCIQHEYDHLNGRLFIDYLSKLKRDRVVKKFAKQAR 167
>gi|381400643|ref|ZP_09925567.1| Def [Kingella kingae PYKK081]
gi|380834406|gb|EIC14250.1| Def [Kingella kingae PYKK081]
Length = 167
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 114/162 (70%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +P+ RL +A+P+ + D ++ ++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MALLPILTHPNERLHIVAQPVVQVDDRIRTLVQDMAETMYAARGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +NQL INP +I + Y EGCLS+PGI++ + R+ I V L+ +G
Sbjct: 61 IDLSEEHNQLLALINP-VITKKDGETTYEEGCLSVPGIYDTVTRANTITVEFLDTQGNKQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHE+DHL GK+F+EYLS K+ RI K K
Sbjct: 120 SLDADGLLAICIQHELDHLAGKLFVEYLSPLKQNRIKTKLKK 161
>gi|386827620|ref|ZP_10114727.1| peptide deformylase [Beggiatoa alba B18LD]
gi|386428504|gb|EIJ42332.1| peptide deformylase [Beggiatoa alba B18LD]
Length = 167
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+++PD RL+ A+P+ D +K+II +M ETMY A GIGLAA+QV+I Q+++
Sbjct: 1 MALLEILHFPDPRLRHKAKPVQVVDAEVKRIIADMFETMYQARGIGLAATQVNIALQIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ NQ INP+I S ++ EGCLS+P I+++++R++ + V ALN EG+
Sbjct: 61 IDISEEKNQPICLINPEITHRSG-LEVMEEGCLSVPSIYDEVERAEFVTVSALNCEGEPL 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ GLLA+C+QHE+DHL GK+F++YLS K++RI KK K +K
Sbjct: 120 ELSTGGLLAVCIQHELDHLEGKLFVDYLSALKRQRIRKKLEKQERK 165
>gi|127514664|ref|YP_001095861.1| peptide deformylase [Shewanella loihica PV-4]
gi|126639959|gb|ABO25602.1| peptide deformylase [Shewanella loihica PV-4]
Length = 170
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL ++ +PD RL+ IA+PITEF+ L+ I NM ETMY GIGLAA+QVD H QL++
Sbjct: 1 MSLLKVLRFPDERLRTIAKPITEFNAELQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + + +VFIN +II S + EGCLS+PGI+ K+ R++ + + AL+ +G F
Sbjct: 61 MDLQDDVERPKVFINLEIIEKSGDF-CNEEGCLSVPGIYAKVDRAEFVTIKALDRDGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GL AICLQHE+DHLNGK+F++YLS K++RI +K K +
Sbjct: 120 TLEADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAAR 164
>gi|238763701|ref|ZP_04624660.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638]
gi|238698003|gb|EEP90761.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638]
Length = 170
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|85060224|ref|YP_455926.1| peptide deformylase [Sodalis glossinidius str. 'morsitans']
gi|123738923|sp|Q2NQQ4.1|DEF_SODGM RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|84780744|dbj|BAE75521.1| polypeptide deformylase [Sodalis glossinidius str. 'morsitans']
Length = 171
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL +++YPD RL+K+A+P+ + + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSLLQVLHYPDERLRKVAKPVVDVNDAIRRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q V INP+++ S E I +EGCLS+P + R+++++V AL+ +G F
Sbjct: 61 IDVSESRDQRLVMINPELLEKSGETGI-DEGCLSIPDQRGFVPRAEKVKVQALDRDGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEK 161
>gi|397660263|ref|YP_006500965.1| peptide deformylase [Klebsiella oxytoca E718]
gi|394348310|gb|AFN34431.1| Peptide deformylase [Klebsiella oxytoca E718]
Length = 169
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ S E I EGCLS+P + R++++++ AL+ EGK F
Sbjct: 61 IDVSENREEQLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|429106389|ref|ZP_19168258.1| Peptide deformylase [Cronobacter malonaticus 681]
gi|429111890|ref|ZP_19173660.1| Peptide deformylase [Cronobacter malonaticus 507]
gi|426293112|emb|CCJ94371.1| Peptide deformylase [Cronobacter malonaticus 681]
gi|426313047|emb|CCJ99773.1| Peptide deformylase [Cronobacter malonaticus 507]
Length = 171
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 124/162 (76%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+ +AEP+TE + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRIVAEPVTEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEK 161
>gi|227820644|ref|YP_002824614.1| peptide deformylase [Sinorhizobium fredii NGR234]
gi|227339643|gb|ACP23861.1| peptide deformylase [Sinorhizobium fredii NGR234]
Length = 174
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++++ P+ D +++++ +M ETMY A GIGLAA Q+ + ++LL+
Sbjct: 1 MTIKPLIILPDPILRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD+SK + VFINPKI+ S+E+ +Y EGCLS+P + +++R I V L+ +GK
Sbjct: 61 LDVSKEGEEKTPLVFINPKIVKSSEERSVYEEGCLSIPDYYAEVERPAAIAVEYLDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K++ +I+KF K K
Sbjct: 121 QQSVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAK 167
>gi|194439835|ref|ZP_03071900.1| peptide deformylase [Escherichia coli 101-1]
gi|420389187|ref|ZP_14888462.1| peptide deformylase [Escherichia coli EPEC C342-62]
gi|422784428|ref|ZP_16837209.1| peptide deformylase [Escherichia coli TW10509]
gi|194421225|gb|EDX37247.1| peptide deformylase [Escherichia coli 101-1]
gi|323974492|gb|EGB69619.1| peptide deformylase [Escherichia coli TW10509]
gi|391315777|gb|EIQ73299.1| peptide deformylase [Escherichia coli EPEC C342-62]
Length = 169
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|365922494|ref|ZP_09446693.1| peptide deformylase [Cardiobacterium valvarum F0432]
gi|364573092|gb|EHM50609.1| peptide deformylase [Cardiobacterium valvarum F0432]
Length = 186
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 116/178 (65%), Gaps = 15/178 (8%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL I+ +PD RL++ AEP+T FD LK I +M TMY A GIGLAA+QV+IH+++++
Sbjct: 1 MSLLDILIHPDQRLRQTAEPVTAFDNRLKIITDDMFATMYEAHGIGLAATQVNIHRRIIV 60
Query: 61 LDISKNNNQLQ---------------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRS 105
+D+ + + + + INP+II +S E ++ EGCLSLPG F +KR
Sbjct: 61 MDVPEKREEDESNDIPPETPVPHTRLILINPEIISHSAETAVWQEGCLSLPGQFADVKRP 120
Query: 106 KRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
K IR ++ G E AEGLL +C+QHEIDHLNG +FI++LS K+ERI KK K+
Sbjct: 121 KTIRYAYYDLGGARCEAEAEGLLGVCIQHEIDHLNGVLFIDHLSRLKRERIEKKLAKS 178
>gi|325272511|ref|ZP_08138888.1| peptide deformylase [Pseudomonas sp. TJI-51]
gi|324102354|gb|EGB99823.1| peptide deformylase [Pseudomonas sp. TJI-51]
Length = 168
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 123/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+T FD L+++I +M ETMY A GIGLAA+QV++H+Q+++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVTVFDDALRQLIDDMFETMYEAPGIGLAATQVNVHQQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP + + + Y EGCLS+PG + + R R+RV A + +GK F
Sbjct: 61 MDLSEDRSEPRVFINPTVEELTDDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ EGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQ 166
>gi|158422422|ref|YP_001523714.1| polypeptide or peptide deformylase family protein [Azorhizobium
caulinodans ORS 571]
gi|158329311|dbj|BAF86796.1| polypeptide or peptide deformylase family protein [Azorhizobium
caulinodans ORS 571]
Length = 172
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 117/168 (69%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ P+ +L++I+ P+ D ++K+ +M ETMY A GIGLAA QV +HK+++
Sbjct: 1 MAILPILIIPEPQLRQISAPVPRIDKEIEKLAADMLETMYDAPGIGLAAIQVGVHKRVIT 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DI++ + V INP+++ S+E YNEGCLS+P + +++R ++ V +++G
Sbjct: 61 IDIAREDAPKNPIVLINPEVVSASEETSFYNEGCLSIPEYYEEVERPAQVTVRYQDLKGA 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA CLQHEIDHLNG +FI++LS K+ER+IKKF K ++
Sbjct: 121 THEIAADGLLATCLQHEIDHLNGVLFIDHLSRLKRERVIKKFTKAARR 168
>gi|254473716|ref|ZP_05087111.1| peptide deformylase [Pseudovibrio sp. JE062]
gi|211957102|gb|EEA92307.1| peptide deformylase [Pseudovibrio sp. JE062]
Length = 175
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 117/174 (67%), Gaps = 8/174 (4%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ I + P+ L++ PI + + ++ + +M +TMY A GIGLAASQ+ + K++ +
Sbjct: 1 MTIREIKFVPEACLREKCAPIEDINDEIRTLADDMLQTMYDAPGIGLAASQIGVMKRMFV 60
Query: 61 LDISKNNNQLQ--------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHA 112
LD+++ ++ VFINP+I W S+EK Y EGCLS+PGI+ ++R +RV
Sbjct: 61 LDVAERESEEDDSVEKEPMVFINPEITWSSEEKNTYQEGCLSIPGIYEDVERPAEVRVSF 120
Query: 113 LNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
LNIEG+ EI A GLLA C+QHE+DHLNG +FI+YLS K++RI+KK +K K+
Sbjct: 121 LNIEGEKQEIEAGGLLATCIQHELDHLNGVLFIDYLSRLKRDRIVKKMIKQQKQ 174
>gi|238797211|ref|ZP_04640712.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969]
gi|238718848|gb|EEQ10663.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969]
Length = 170
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|123444064|ref|YP_001008034.1| peptide deformylase [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|238788878|ref|ZP_04632668.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641]
gi|332163227|ref|YP_004299804.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|386310766|ref|YP_006006822.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
Y11]
gi|418243717|ref|ZP_12870177.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|420260314|ref|ZP_14762997.1| peptide deformylase [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|433549203|ref|ZP_20505249.1| Peptide deformylase [Yersinia enterocolitica IP 10393]
gi|158512897|sp|A1JRZ1.1|DEF_YERE8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|122091025|emb|CAL13908.1| polypeptide deformylase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238722905|gb|EEQ14555.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641]
gi|318607709|emb|CBY29207.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
Y11]
gi|325667457|gb|ADZ44101.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330861818|emb|CBX71990.1| peptide deformylase [Yersinia enterocolitica W22703]
gi|351776785|gb|EHB19071.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|404512130|gb|EKA25982.1| peptide deformylase [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|431790244|emb|CCO68289.1| Peptide deformylase [Yersinia enterocolitica IP 10393]
Length = 170
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|424879774|ref|ZP_18303406.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WU95]
gi|392516137|gb|EIW40869.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WU95]
Length = 171
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P++ PD L+++++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLVILPDPVLRQLSKPIERLDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DIS+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDISREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|198282168|ref|YP_002218489.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667290|ref|YP_002424533.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|415967538|ref|ZP_11558209.1| polypeptide deformylase [Acidithiobacillus sp. GGI-221]
gi|198246689|gb|ACH82282.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519503|gb|ACK80089.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|339833252|gb|EGQ61110.1| polypeptide deformylase [Acidithiobacillus sp. GGI-221]
Length = 167
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ PD RLK +A PI D ++++ +M ETMY A GIGLAA QV +L++
Sbjct: 1 MPLLKILEIPDARLKDVARPIARVDKQIQQLADDMAETMYDAPGIGLAAPQVAAGHRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N N L +NP+II + E+++ EGCLS+PG+ ++R++++ V A ++GK
Sbjct: 61 VDVSENRNDLLTLLNPEIIARTGEEEM-KEGCLSVPGVLETVRRAEKVTVRATTVQGKTV 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLA+CLQHEIDHL+G +FI++LS K+ I +K K ++
Sbjct: 120 ELEADGLLAVCLQHEIDHLDGTLFIDHLSRLKQSLIRRKAEKRVR 164
>gi|344344901|ref|ZP_08775760.1| Peptide deformylase [Marichromatium purpuratum 984]
gi|343803595|gb|EGV21502.1| Peptide deformylase [Marichromatium purpuratum 984]
Length = 178
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 126/166 (75%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+K A+P+ + D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAMLEILTFPDPRLRKAAKPVDQVDDAVRRLIDDMLETMYAAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++++Q INP+I+ E+Q+ GCLS+PG + + R++R++V AL+ +GK F
Sbjct: 61 IDISEDHDQPLCLINPEILEREGEEQMEE-GCLSVPGFYESVTRAERVQVKALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ +GLLA+C+QHE+DHLNGK+F++++S+ K++RI +K K K+
Sbjct: 120 TLETDGLLAVCIQHELDHLNGKLFVDHISSLKRQRIRRKLEKVSKR 165
>gi|218460831|ref|ZP_03500922.1| peptide deformylase [Rhizobium etli Kim 5]
Length = 171
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPILRQLSQPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|114705885|ref|ZP_01438788.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506]
gi|114538731|gb|EAU41852.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506]
Length = 173
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+K +EP+ D LK+ +M ETMY A GIGLAA QV ++L
Sbjct: 1 MTIKPLIILPDPVLRKTSEPVARVDDALKRFADDMLETMYEAPGIGLAAIQVGEPLRMLT 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DISK + +VF+NP+I+ S++ +Y EGCLS+P F +++R R+ V L ++G+
Sbjct: 61 IDISKEEEAKEPRVFLNPEIVSRSEDFSVYEEGCLSIPEYFAEVERPARVSVRYLGLDGE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
M E AEGLLA CLQHEIDHLNG +FI+YLS K++ +IKKF K +
Sbjct: 121 MHEEEAEGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVIKKFTKAAR 167
>gi|333985160|ref|YP_004514370.1| peptide deformylase [Methylomonas methanica MC09]
gi|333809201|gb|AEG01871.1| Peptide deformylase [Methylomonas methanica MC09]
Length = 168
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ +PD RL+ +AE + + D N+K ++ +M ETMY A G+GLAA+QV++HK++++
Sbjct: 1 MSILTILEFPDKRLRTVAEEVNQVDDNIKTLVDDMLETMYAAKGVGLAATQVNVHKRVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ ++ INPKI+ E++ GCLS+PG F K+ R++ I+V ALN +G+ F
Sbjct: 61 MDISEDKDEPICLINPKIVEKDGEEESEE-GCLSVPGFFEKVSRAEHIKVQALNRDGQSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A LLA+C+QHE+DHL GK+F++YLS FK+ RI K K
Sbjct: 120 ELEARELLAVCIQHEMDHLQGKLFVDYLSAFKRNRIKAKLDK 161
>gi|333891511|ref|YP_004465386.1| peptide deformylase [Alteromonas sp. SN2]
gi|332991529|gb|AEF01584.1| peptide deformylase [Alteromonas sp. SN2]
Length = 169
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 120/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+P+ E + ++K+++ +M ETM GIGLAA+QVD H Q+++
Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDDIKQLVSDMFETMKDENGIGLAATQVDRHVQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
++++++ ++ +VFINP+I I EGCLS+PG + K++R++ I V ALN G+ F
Sbjct: 61 MNVAEDQDEPRVFINPEITKKDG-STISEEGCLSVPGNYAKVERAEEITVKALNENGEAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI KK K +
Sbjct: 120 ELEADGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEAR 164
>gi|294138834|ref|YP_003554812.1| polypeptide deformylase [Shewanella violacea DSS12]
gi|293325303|dbj|BAJ00034.1| polypeptide deformylase [Shewanella violacea DSS12]
Length = 170
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 116/165 (70%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL ++ +PD RL+ A+P+TEF+ L+ I NM ETMY GIGLAA+QVD H+QL+I
Sbjct: 1 MSLLKVLRFPDERLRTFAKPVTEFNTGLQTQIDNMFETMYEEKGIGLAATQVDYHRQLII 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +VFIN +I+ S EGCLS+PGI+ I+R++ + + AL+ +G F
Sbjct: 61 MDLQDEEERPKVFINLEIVASSGHFS-NEEGCLSVPGIYADIERAEHVTIKALDRDGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAICLQHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 120 TLEADGLLAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAAR 164
>gi|375257647|ref|YP_005016817.1| peptide deformylase [Klebsiella oxytoca KCTC 1686]
gi|402843863|ref|ZP_10892247.1| peptide deformylase [Klebsiella sp. OBRC7]
gi|423105143|ref|ZP_17092845.1| peptide deformylase [Klebsiella oxytoca 10-5242]
gi|365907125|gb|AEX02578.1| peptide deformylase [Klebsiella oxytoca KCTC 1686]
gi|376381909|gb|EHS94645.1| peptide deformylase [Klebsiella oxytoca 10-5242]
gi|402276028|gb|EJU25157.1| peptide deformylase [Klebsiella sp. OBRC7]
Length = 169
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ S E I EGCLS+P + R++++++ AL+ EGK F
Sbjct: 61 IDVSENREEQLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|374329412|ref|YP_005079596.1| peptide deformylase [Pseudovibrio sp. FO-BEG1]
gi|359342200|gb|AEV35574.1| Peptide deformylase [Pseudovibrio sp. FO-BEG1]
Length = 175
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 117/174 (67%), Gaps = 8/174 (4%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ I + P+ L++ PI + + ++ + +M +TMY A GIGLAASQ+ + K++ +
Sbjct: 1 MTIREIKFVPEACLREKCAPIEDINDEIRTLADDMLQTMYDAPGIGLAASQIGVMKRMFV 60
Query: 61 LDISKNNNQLQ--------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHA 112
LD+++ ++ VFINP+I W S+EK Y EGCLS+PG++ ++R +RV
Sbjct: 61 LDVAERESEEDDSVEKEPMVFINPEITWSSEEKNTYQEGCLSIPGVYEDVERPAEVRVSF 120
Query: 113 LNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
LNIEG+ EI A GLLA C+QHE+DHLNG +FI+YLS K++RI+KK +K K+
Sbjct: 121 LNIEGEKQEIEAGGLLATCIQHELDHLNGVLFIDYLSRLKRDRIVKKMIKQQKQ 174
>gi|308188323|ref|YP_003932454.1| peptide deformylase [Pantoea vagans C9-1]
gi|308058833|gb|ADO11005.1| peptide deformylase [Pantoea vagans C9-1]
Length = 170
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+K+A P+ E + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + V INP+++ S E I EGCLS+P + R++R++V AL+ +GK F
Sbjct: 61 IDVSESREERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDRDGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A LLAIC+QHEIDHL GK+FI+YLS K++RI K K
Sbjct: 120 ELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEK 161
>gi|421588144|ref|ZP_16033464.1| peptide deformylase [Rhizobium sp. Pop5]
gi|403707226|gb|EJZ22278.1| peptide deformylase [Rhizobium sp. Pop5]
Length = 171
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 117/167 (70%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D++L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPLLRQLSKPIERVDVDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDVSREGEEKQPQVFINPEIVTSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167
>gi|134094837|ref|YP_001099912.1| peptide deformylase [Herminiimonas arsenicoxydans]
gi|133738740|emb|CAL61787.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas
arsenicoxydans]
Length = 177
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+ L I+ YPD RL K+A+ +T+ D +++++ +M +TMY A GIGLAA+QV++H ++++
Sbjct: 1 MSKLAILQYPDERLHKVAQAVTQVDAGIRRLVEDMAQTMYAADGIGLAATQVNVHLRVIL 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ +QL V INP++I + EGCLS+P ++ K+KR+ IR+ AL+I GK F
Sbjct: 61 VDISEDRSQLLVMINPEVIKMGGSAEC-EEGCLSVPDVYEKVKRAAWIRLRALDINGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GL A+C+QHE+DHL G +F+E+LS + RI+ K
Sbjct: 120 EVQADGLKAMCIQHELDHLQGMVFVEHLSPLNQARILSTLAK 161
>gi|24114564|ref|NP_709074.1| peptide deformylase [Shigella flexneri 2a str. 301]
gi|30064608|ref|NP_838779.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
gi|74313805|ref|YP_312224.1| peptide deformylase [Shigella sonnei Ss046]
gi|110807134|ref|YP_690654.1| peptide deformylase [Shigella flexneri 5 str. 8401]
gi|170680840|ref|YP_001745549.1| peptide deformylase [Escherichia coli SMS-3-5]
gi|218702049|ref|YP_002409678.1| peptide deformylase [Escherichia coli IAI39]
gi|260857407|ref|YP_003231298.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
gi|260870029|ref|YP_003236431.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
gi|300935284|ref|ZP_07150295.1| peptide deformylase [Escherichia coli MS 21-1]
gi|331674794|ref|ZP_08375551.1| peptide deformylase [Escherichia coli TA280]
gi|331684929|ref|ZP_08385515.1| peptide deformylase [Escherichia coli H299]
gi|383180460|ref|YP_005458465.1| peptide deformylase [Shigella sonnei 53G]
gi|384544868|ref|YP_005728932.1| putative N-formylmethionyl-tRNA deformylase [Shigella flexneri
2002017]
gi|386626090|ref|YP_006145818.1| peptide deformylase [Escherichia coli O7:K1 str. CE10]
gi|414578067|ref|ZP_11435239.1| peptide deformylase [Shigella sonnei 3233-85]
gi|415787651|ref|ZP_11494198.1| peptide deformylase [Escherichia coli EPECa14]
gi|415820329|ref|ZP_11509518.1| peptide deformylase [Escherichia coli OK1180]
gi|415851174|ref|ZP_11527923.1| peptide deformylase [Shigella sonnei 53G]
gi|417127236|ref|ZP_11974727.1| peptide deformylase [Escherichia coli 97.0246]
gi|417197594|ref|ZP_12016528.1| peptide deformylase [Escherichia coli 4.0522]
gi|417211259|ref|ZP_12021676.1| peptide deformylase [Escherichia coli JB1-95]
gi|417296370|ref|ZP_12083617.1| peptide deformylase [Escherichia coli 900105 (10e)]
gi|417593689|ref|ZP_12244378.1| peptide deformylase [Escherichia coli 2534-86]
gi|417704343|ref|ZP_12353441.1| peptide deformylase [Shigella flexneri K-218]
gi|417715256|ref|ZP_12364200.1| peptide deformylase [Shigella flexneri K-272]
gi|417719191|ref|ZP_12368080.1| peptide deformylase [Shigella flexneri K-227]
gi|417725941|ref|ZP_12374720.1| peptide deformylase [Shigella flexneri K-304]
gi|417731222|ref|ZP_12379901.1| peptide deformylase [Shigella flexneri K-671]
gi|417735351|ref|ZP_12383996.1| peptide deformylase [Shigella flexneri 2747-71]
gi|418252663|ref|ZP_12878216.1| peptide deformylase [Shigella flexneri 6603-63]
gi|418268753|ref|ZP_12887422.1| peptide deformylase [Shigella sonnei str. Moseley]
gi|419205498|ref|ZP_13748661.1| peptide deformylase [Escherichia coli DEC8B]
gi|419211747|ref|ZP_13754814.1| peptide deformylase [Escherichia coli DEC8C]
gi|419217687|ref|ZP_13760681.1| peptide deformylase [Escherichia coli DEC8D]
gi|419223436|ref|ZP_13766348.1| peptide deformylase [Escherichia coli DEC8E]
gi|419228909|ref|ZP_13771750.1| peptide deformylase [Escherichia coli DEC9A]
gi|419234502|ref|ZP_13777270.1| peptide deformylase [Escherichia coli DEC9B]
gi|419241077|ref|ZP_13783767.1| peptide deformylase [Escherichia coli DEC9C]
gi|419245355|ref|ZP_13787988.1| peptide deformylase [Escherichia coli DEC9D]
gi|419251216|ref|ZP_13793784.1| peptide deformylase [Escherichia coli DEC9E]
gi|419256908|ref|ZP_13799408.1| peptide deformylase [Escherichia coli DEC10A]
gi|419263895|ref|ZP_13806297.1| peptide deformylase [Escherichia coli DEC10B]
gi|419275371|ref|ZP_13817654.1| peptide deformylase [Escherichia coli DEC10D]
gi|419286204|ref|ZP_13828367.1| peptide deformylase [Escherichia coli DEC10F]
gi|419878380|ref|ZP_14399852.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9534]
gi|419879806|ref|ZP_14401230.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9545]
gi|419891907|ref|ZP_14411947.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9570]
gi|419897529|ref|ZP_14417113.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9574]
gi|419904398|ref|ZP_14423398.1| peptide deformylase [Escherichia coli O26:H11 str. CVM9942]
gi|419906933|ref|ZP_14425790.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10026]
gi|420090404|ref|ZP_14602173.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9602]
gi|420096498|ref|ZP_14607867.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9634]
gi|420104545|ref|ZP_14615236.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9455]
gi|420111240|ref|ZP_14621084.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9553]
gi|420117572|ref|ZP_14626928.1| hypothetical protein ECO10021_28897 [Escherichia coli O26:H11 str.
CVM10021]
gi|420123473|ref|ZP_14632363.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10030]
gi|420126555|ref|ZP_14635290.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10224]
gi|420135675|ref|ZP_14643755.1| peptide deformylase [Escherichia coli O26:H11 str. CVM9952]
gi|420322254|ref|ZP_14824077.1| peptide deformylase [Shigella flexneri 2850-71]
gi|420334130|ref|ZP_14835758.1| peptide deformylase [Shigella flexneri K-1770]
gi|420360636|ref|ZP_14861590.1| peptide deformylase [Shigella sonnei 3226-85]
gi|422831892|ref|ZP_16880023.1| peptide deformylase [Escherichia coli B093]
gi|424748550|ref|ZP_18176690.1| peptide deformylase [Escherichia coli O26:H11 str. CFSAN001629]
gi|424766949|ref|ZP_18194286.1| peptide deformylase [Escherichia coli O111:H11 str. CFSAN001630]
gi|424769951|ref|ZP_18197167.1| peptide deformylase [Escherichia coli O111:H8 str. CFSAN001632]
gi|424839519|ref|ZP_18264156.1| peptide deformylase [Shigella flexneri 5a str. M90T]
gi|425381566|ref|ZP_18765563.1| peptide deformylase [Escherichia coli EC1865]
gi|432545017|ref|ZP_19781851.1| peptide deformylase [Escherichia coli KTE236]
gi|432550499|ref|ZP_19787258.1| peptide deformylase [Escherichia coli KTE237]
gi|432618523|ref|ZP_19854627.1| peptide deformylase [Escherichia coli KTE75]
gi|432623641|ref|ZP_19859658.1| peptide deformylase [Escherichia coli KTE76]
gi|432682018|ref|ZP_19917376.1| peptide deformylase [Escherichia coli KTE143]
gi|432817048|ref|ZP_20050808.1| peptide deformylase [Escherichia coli KTE115]
gi|450193527|ref|ZP_21892034.1| peptide deformylase [Escherichia coli SEPT362]
gi|39930879|sp|Q83PZ1.1|DEF_SHIFL RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|122957164|sp|Q0T016.1|DEF_SHIF8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123773439|sp|Q3YWX3.1|DEF_SHISS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767584|sp|B7NLK6.1|DEF_ECO7I RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767588|sp|B1LGP3.1|DEF_ECOSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|24053759|gb|AAN44781.1| peptide deformylase [Shigella flexneri 2a str. 301]
gi|30042867|gb|AAP18590.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
gi|73857282|gb|AAZ89989.1| peptide deformylase [Shigella sonnei Ss046]
gi|110616682|gb|ABF05349.1| peptide deformylase [Shigella flexneri 5 str. 8401]
gi|170518558|gb|ACB16736.1| peptide deformylase [Escherichia coli SMS-3-5]
gi|218372035|emb|CAR19895.1| peptide deformylase [Escherichia coli IAI39]
gi|257756056|dbj|BAI27558.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
gi|257766385|dbj|BAI37880.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
gi|281602655|gb|ADA75639.1| putative N-formylmethionyl-tRNA deformylase [Shigella flexneri
2002017]
gi|300459487|gb|EFK22980.1| peptide deformylase [Escherichia coli MS 21-1]
gi|323154124|gb|EFZ40327.1| peptide deformylase [Escherichia coli EPECa14]
gi|323164851|gb|EFZ50642.1| peptide deformylase [Shigella sonnei 53G]
gi|323179177|gb|EFZ64751.1| peptide deformylase [Escherichia coli OK1180]
gi|331067703|gb|EGI39101.1| peptide deformylase [Escherichia coli TA280]
gi|331077300|gb|EGI48512.1| peptide deformylase [Escherichia coli H299]
gi|332749605|gb|EGJ80022.1| peptide deformylase [Shigella flexneri K-671]
gi|332753999|gb|EGJ84372.1| peptide deformylase [Shigella flexneri 2747-71]
gi|332996761|gb|EGK16386.1| peptide deformylase [Shigella flexneri K-272]
gi|332998313|gb|EGK17913.1| peptide deformylase [Shigella flexneri K-218]
gi|333012534|gb|EGK31915.1| peptide deformylase [Shigella flexneri K-304]
gi|333014514|gb|EGK33862.1| peptide deformylase [Shigella flexneri K-227]
gi|345333276|gb|EGW65727.1| peptide deformylase [Escherichia coli 2534-86]
gi|349739826|gb|AEQ14532.1| peptide deformylase [Escherichia coli O7:K1 str. CE10]
gi|371615974|gb|EHO04350.1| peptide deformylase [Escherichia coli B093]
gi|378044952|gb|EHW07362.1| peptide deformylase [Escherichia coli DEC8B]
gi|378049980|gb|EHW12314.1| peptide deformylase [Escherichia coli DEC8C]
gi|378058534|gb|EHW20742.1| peptide deformylase [Escherichia coli DEC8D]
gi|378061877|gb|EHW24056.1| peptide deformylase [Escherichia coli DEC8E]
gi|378069747|gb|EHW31832.1| peptide deformylase [Escherichia coli DEC9A]
gi|378074637|gb|EHW36671.1| peptide deformylase [Escherichia coli DEC9B]
gi|378076294|gb|EHW38302.1| peptide deformylase [Escherichia coli DEC9C]
gi|378087340|gb|EHW49200.1| peptide deformylase [Escherichia coli DEC9D]
gi|378091042|gb|EHW52876.1| peptide deformylase [Escherichia coli DEC9E]
gi|378097466|gb|EHW59218.1| peptide deformylase [Escherichia coli DEC10A]
gi|378101114|gb|EHW62803.1| peptide deformylase [Escherichia coli DEC10B]
gi|378112472|gb|EHW74051.1| peptide deformylase [Escherichia coli DEC10D]
gi|378126834|gb|EHW88227.1| peptide deformylase [Escherichia coli DEC10F]
gi|383468571|gb|EID63592.1| peptide deformylase [Shigella flexneri 5a str. M90T]
gi|386144539|gb|EIG91005.1| peptide deformylase [Escherichia coli 97.0246]
gi|386188899|gb|EIH77688.1| peptide deformylase [Escherichia coli 4.0522]
gi|386195863|gb|EIH90098.1| peptide deformylase [Escherichia coli JB1-95]
gi|386259814|gb|EIJ15288.1| peptide deformylase [Escherichia coli 900105 (10e)]
gi|388335448|gb|EIL02013.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9534]
gi|388348763|gb|EIL14334.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9570]
gi|388355173|gb|EIL20032.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9574]
gi|388367679|gb|EIL31345.1| peptide deformylase [Escherichia coli O26:H11 str. CVM9942]
gi|388370639|gb|EIL34156.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9545]
gi|388377853|gb|EIL40633.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10026]
gi|391243175|gb|EIQ02471.1| peptide deformylase [Shigella flexneri K-1770]
gi|391246044|gb|EIQ05308.1| peptide deformylase [Shigella flexneri 2850-71]
gi|391278403|gb|EIQ37110.1| peptide deformylase [Shigella sonnei 3226-85]
gi|391282215|gb|EIQ40851.1| peptide deformylase [Shigella sonnei 3233-85]
gi|394385813|gb|EJE63329.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9602]
gi|394388309|gb|EJE65591.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9634]
gi|394392138|gb|EJE68933.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10224]
gi|394398836|gb|EJE74973.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9553]
gi|394401965|gb|EJE77729.1| hypothetical protein ECO10021_28897 [Escherichia coli O26:H11 str.
CVM10021]
gi|394403983|gb|EJE79471.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9455]
gi|394417013|gb|EJE90771.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10030]
gi|394419733|gb|EJE93315.1| peptide deformylase [Escherichia coli O26:H11 str. CVM9952]
gi|397896429|gb|EJL12848.1| peptide deformylase [Shigella sonnei str. Moseley]
gi|397902165|gb|EJL18494.1| peptide deformylase [Shigella flexneri 6603-63]
gi|408294308|gb|EKJ12708.1| peptide deformylase [Escherichia coli EC1865]
gi|421933186|gb|EKT90979.1| peptide deformylase [Escherichia coli O111:H11 str. CFSAN001630]
gi|421943104|gb|EKU00396.1| peptide deformylase [Escherichia coli O111:H8 str. CFSAN001632]
gi|421944157|gb|EKU01418.1| peptide deformylase [Escherichia coli O26:H11 str. CFSAN001629]
gi|431071844|gb|ELD79601.1| peptide deformylase [Escherichia coli KTE236]
gi|431077401|gb|ELD84652.1| peptide deformylase [Escherichia coli KTE237]
gi|431151574|gb|ELE52587.1| peptide deformylase [Escherichia coli KTE75]
gi|431156569|gb|ELE57236.1| peptide deformylase [Escherichia coli KTE76]
gi|431217565|gb|ELF15131.1| peptide deformylase [Escherichia coli KTE143]
gi|431361451|gb|ELG48032.1| peptide deformylase [Escherichia coli KTE115]
gi|449317420|gb|EMD07509.1| peptide deformylase [Escherichia coli SEPT362]
Length = 169
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|384421020|ref|YP_005630380.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463933|gb|AEQ98212.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 170
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S N QVF+NP+I+ E Q+ EGCLS+PGI+ + R+ I V L+ +G
Sbjct: 61 FMVIDVSDEKNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ A+GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 QAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167
>gi|432836235|ref|ZP_20069767.1| peptide deformylase [Escherichia coli KTE136]
gi|431382336|gb|ELG66674.1| peptide deformylase [Escherichia coli KTE136]
Length = 169
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+SKN ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSKNRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|354595950|ref|ZP_09013967.1| Peptide deformylase [Brenneria sp. EniD312]
gi|353673885|gb|EHD19918.1| Peptide deformylase [Brenneria sp. EniD312]
Length = 169
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ A P+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLHVLHFPDERLRIKARPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+++ S + I EGCLS+P + R++R++V AL+ EG F
Sbjct: 61 IDVSETRDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAERVKVRALDREGNTF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLAIC+QHE+DHL GK+FI+YLS+ K++RI +K K
Sbjct: 120 ELEAEGLLAICIQHEMDHLVGKLFIDYLSSLKRQRIRQKLEK 161
>gi|114321775|ref|YP_743458.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1]
gi|122310781|sp|Q0A5B9.1|DEF_ALHEH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|114228169|gb|ABI57968.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1]
Length = 178
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 122/167 (73%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL+++A P+ + D +++++ +M ETMY A GIGLAA+QV +++++++
Sbjct: 1 MAILDILVYPDPRLREVAAPVAQVDDDIRRLADDMLETMYDAQGIGLAATQVGVNQRVVV 60
Query: 61 LDISKNN-NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+D+++ Q V INP+I+ + EGCLS+PG + ++R++RIR AL+ EG+
Sbjct: 61 MDLAEEGARQPLVLINPEIL-DREGAATGQEGCLSIPGFYEDVERAERIRFRALDREGRP 119
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+E AEGL+A+C+QHEIDHL+GK+F++YLS K++RI +K K +++
Sbjct: 120 WEQEAEGLMAVCVQHEIDHLDGKLFVDYLSELKRKRIRRKLEKLVRQ 166
>gi|442609882|ref|ZP_21024612.1| Peptide deformylase [Pseudoalteromonas luteoviolacea B = ATCC
29581]
gi|441748602|emb|CCQ10674.1| Peptide deformylase [Pseudoalteromonas luteoviolacea B = ATCC
29581]
Length = 169
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 119/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ +AEP+ E + +++I+ +M ETMY GIGLAA+QV+IH+++++
Sbjct: 1 MARLEVLRFPDERLRTVAEPVAEVNDEVRQIVQDMFETMYDENGIGLAATQVNIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +V INP+II + I EGCLS+P + K+ R++ + V ALN +G+ +
Sbjct: 61 IDVSEDRDEPRVLINPEIIEKAG-CTISEEGCLSVPSSYAKVDRAETVTVRALNEKGESY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
AEGLLA+C+QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 TFDAEGLLAVCVQHELDHLMGKLFIDYLSPLKRQRIRKKLEKEAK 164
>gi|88860597|ref|ZP_01135234.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
tunicata D2]
gi|88817192|gb|EAR27010.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
tunicata D2]
Length = 167
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ IA+P+T+ D ++KKI+ +M +TMY GIGLAA+Q +IH ++++
Sbjct: 1 MAFLEVLRFPDERLRTIAKPVTQVDDSIKKIVADMFDTMYEESGIGLAATQANIHLRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ + V INP+I I EGCLS+P + K+ R++ + V ALN++G+ F
Sbjct: 61 IDVTEDKSDQLVLINPEITKKDG-STISEEGCLSVPNSYAKVDRAETVTVKALNLDGQEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI KK K K
Sbjct: 120 SLDADGLLAICIQHELDHLQGKLFVDYLSPLKRDRIRKKLEKEAK 164
>gi|429083008|ref|ZP_19146059.1| Peptide deformylase [Cronobacter condimenti 1330]
gi|426548195|emb|CCJ72100.1| Peptide deformylase [Cronobacter condimenti 1330]
Length = 171
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+ +AEP+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ ALN +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALNRDGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEK 161
>gi|261346901|ref|ZP_05974545.1| peptide deformylase [Providencia rustigianii DSM 4541]
gi|282564968|gb|EFB70503.1| peptide deformylase [Providencia rustigianii DSM 4541]
Length = 173
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I++YPD RL+ IA+P+ + D ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLNILHYPDERLRTIAKPVEKVDASIQRIVDDMFETMYDEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ V INP++I E I EGCLS+P + R+++++V ALN G++F
Sbjct: 61 IDVSESRSERLVLINPELIDKKGETGI-EEGCLSIPEQQGFVARAEQVKVRALNYNGELF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEK 161
>gi|218672914|ref|ZP_03522583.1| peptide deformylase [Rhizobium etli GR56]
Length = 171
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPILRQLSQPIERMDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|217977312|ref|YP_002361459.1| peptide deformylase [Methylocella silvestris BL2]
gi|254767594|sp|B8ENG6.1|DEF_METSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|217502688|gb|ACK50097.1| peptide deformylase [Methylocella silvestris BL2]
Length = 196
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 114/170 (67%), Gaps = 5/170 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L PII PD RL+ +A P+ D ++ ++ +M ETMY A GIGLAA+Q+ + +++++
Sbjct: 1 MPLRPIIILPDKRLRLVARPVASVDSEVRALMDDMLETMYEAPGIGLAATQIAVDRRVIV 60
Query: 61 LDISKNNNQLQ-----VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNI 115
LD++K + NP+I+W S+E Y EGCLS+P + ++ R +++RV L+
Sbjct: 61 LDVAKRRDDSAKADPICLANPEILWASEELSSYEEGCLSIPEFYEEVFRPEKVRVGYLDR 120
Query: 116 EGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+G+ EI A+GLLA CLQHEIDHLNG +FI+++S K+ RIIKKF K K
Sbjct: 121 DGRRREIEADGLLATCLQHEIDHLNGVLFIDHISRLKRARIIKKFEKAAK 170
>gi|157148861|ref|YP_001456180.1| peptide deformylase [Citrobacter koseri ATCC BAA-895]
gi|166198515|sp|A8AQI1.1|DEF_CITK8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|157086066|gb|ABV15744.1| hypothetical protein CKO_04699 [Citrobacter koseri ATCC BAA-895]
Length = 169
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|58424802|gb|AAW73839.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 183
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 14 MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 73
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S N QVF+NP+I+ E Q+ EGCLS+PGI+ + R+ I V L+ +G
Sbjct: 74 FMVIDVSDEKNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLDRQG 132
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ A+GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 133 QAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 180
>gi|424873417|ref|ZP_18297079.1| peptide deformylase [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393169118|gb|EJC69165.1| peptide deformylase [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 171
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DIS+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDISREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVAVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|307132806|ref|YP_003884822.1| peptide deformylase [Dickeya dadantii 3937]
gi|306530335|gb|ADN00266.1| peptide deformylase [Dickeya dadantii 3937]
Length = 169
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ A+P+ E + +++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRIKAQPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+++ S + I EGCLS+P + R++R+ V AL+ EGK F
Sbjct: 61 IDVSEERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAERVSVRALDREGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEAEGLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEK 161
>gi|238752657|ref|ZP_04614128.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
gi|238709084|gb|EEQ01331.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
Length = 170
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M +TMY GIGLAA+QVD+H Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNSEIQRIVDDMFDTMYAEEGIGLAATQVDVHLQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEK 161
>gi|440730993|ref|ZP_20911043.1| peptide deformylase [Xanthomonas translucens DAR61454]
gi|440375617|gb|ELQ12320.1| peptide deformylase [Xanthomonas translucens DAR61454]
Length = 170
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 117/168 (69%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDI---NLKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A + D+ ++++ +M ETMY A GIGLAASQVD+H++
Sbjct: 1 MALLPILEFPDPRLRTKALQVDPADVIAPAFQRLLDDMFETMYEAPGIGLAASQVDVHQR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N QVFINP+I+ E Q++ EGCLS+PGI+ + R++ I V L+ G
Sbjct: 61 FMVIDVSEEKNAPQVFINPQIVQRDGE-QVHQEGCLSVPGIYADVTRAEAIVVRYLDRHG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 WPQELSADGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLAKARK 167
>gi|84622203|ref|YP_449575.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|161899019|ref|YP_199224.2| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84366143|dbj|BAE67301.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 170
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S N QVF+NP+I+ E Q+ EGCLS+PGI+ + R+ I V L+ +G
Sbjct: 61 FMVIDVSDEKNLPQVFVNPEIVSKQGE-QLCQEGCLSVPGIYADVSRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ A+GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 QAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167
>gi|311277759|ref|YP_003939990.1| peptide deformylase [Enterobacter cloacae SCF1]
gi|308746954|gb|ADO46706.1| peptide deformylase [Enterobacter cloacae SCF1]
Length = 169
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+AEP+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHIPDERLRKVAEPVQEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ Q V INP++I E I EGCLS+P + R++ ++V AL+ +GK F
Sbjct: 61 IDVSEDREQQLVLINPELIEKDGETGI-EEGCLSVPEQRALVPRAETVKVRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELNADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|86356069|ref|YP_467961.1| peptide deformylase [Rhizobium etli CFN 42]
gi|86280171|gb|ABC89234.1| peptide deformylase protein [Rhizobium etli CFN 42]
Length = 171
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 117/167 (70%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ Q QVFINP+I+ S ++ +Y EGCLS+P + +++R + V L+ EGK
Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDDRSVYEEGCLSIPDYYAEVERPATVSVKYLDREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K+E +IKKF K K
Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167
>gi|344198258|ref|YP_004782584.1| peptide deformylase [Acidithiobacillus ferrivorans SS3]
gi|343773702|gb|AEM46258.1| Peptide deformylase [Acidithiobacillus ferrivorans SS3]
Length = 174
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ +PD RLK +A+PI D ++++ +M ETMY A GIGLAA QV +L++
Sbjct: 8 MPLLKILEFPDARLKSMAQPIARVDKQIQQLADDMAETMYDAPGIGLAAPQVAAGHRLIV 67
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N N L +NP+II + E+++ EGCLS+PG+ ++R++++ V A ++G+
Sbjct: 68 VDVSENRNDLLTLVNPEIIASTGEEEM-KEGCLSVPGVLEMVRRAEKVTVRATTVQGRTI 126
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLA+CLQHEIDHLNG + +++LS K+ I +K K ++
Sbjct: 127 ELEADGLLAVCLQHEIDHLNGTLLVDHLSRLKQNLIRRKADKRVR 171
>gi|283788078|ref|YP_003367943.1| polypeptide deformylase [Citrobacter rodentium ICC168]
gi|282951532|emb|CBG91231.1| polypeptide deformylase [Citrobacter rodentium ICC168]
Length = 169
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ E I EGCLS+P + R++++++ AL+ EGK F
Sbjct: 61 IDVSENRDERLVLINPELLEKEGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|116250199|ref|YP_766037.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841]
gi|115254847|emb|CAK05921.1| putative peptide deformylase (polypeptide deformylase) [Rhizobium
leguminosarum bv. viciae 3841]
Length = 171
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DIS+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDISREGEEKQPQVFINPEIVKSSDERSLYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|71279368|ref|YP_266802.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
gi|71145108|gb|AAZ25581.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
Length = 171
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 111/165 (67%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+L I+ +PD RL+ A+P+T+ II +M TMY G+GLAA+QVDIH+++++
Sbjct: 1 MTILTILRFPDPRLRTKAQPVTDITDATATIIDDMLATMYEENGVGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S++N+Q +FINP+II S E I EGCLS+PG + K+ R V AL+ GK F
Sbjct: 61 MDTSEDNDQPIIFINPEIIATSNETSINEEGCLSVPGTYAKVDRHDACTVKALDRHGKEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A L +IC+QHE+DHL G +F++YLS K++RI KK K K
Sbjct: 121 SLNATELQSICIQHELDHLKGVLFVDYLSPLKRQRIQKKLEKEAK 165
>gi|270264340|ref|ZP_06192606.1| peptide deformylase [Serratia odorifera 4Rx13]
gi|421785887|ref|ZP_16222308.1| peptide deformylase [Serratia plymuthica A30]
gi|270041476|gb|EFA14574.1| peptide deformylase [Serratia odorifera 4Rx13]
gi|407751925|gb|EKF62087.1| peptide deformylase [Serratia plymuthica A30]
Length = 169
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+K+A P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHYPDERLRKVAAPVKEVNATIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R+ +++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAANVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|422007066|ref|ZP_16354053.1| peptide deformylase [Providencia rettgeri Dmel1]
gi|414097912|gb|EKT59564.1| peptide deformylase [Providencia rettgeri Dmel1]
Length = 173
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+ IA+P+ + D ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLNVLHYPDERLRTIAKPVDKVDASIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP+++ S E I EGCLS+P + R+++++V ALN G+ F
Sbjct: 61 IDVSETRDERLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEQVKVRALNYNGESF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEK 161
>gi|384083011|ref|ZP_09994186.1| peptide deformylase [gamma proteobacterium HIMB30]
Length = 170
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 112/163 (68%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ IA+P+ D +++ +I +M ETMY A GIGLAA+Q+D+H ++++
Sbjct: 1 MALRKILEFPDPRLRTIAKPVETVDDSIRTLIDDMFETMYEAQGIGLAATQIDVHLRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + N+ V INP+ +KE EGCLS+PGI +KR + IR+ AL+ +G +
Sbjct: 61 IDLQDDQNEPLVMINPEFDTLTKEIDEMQEGCLSVPGIHEVVKRPEHIRLKALDRDGNSY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A GL A+C+QHE DHLNGK+F+++LSN K+ RI K K
Sbjct: 121 ELEATGLFAVCIQHECDHLNGKLFVDHLSNLKRSRIKAKLTKQ 163
>gi|424888917|ref|ZP_18312520.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393174466|gb|EJC74510.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 171
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ ++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPILRQASKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQTVDADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|212554450|gb|ACJ26904.1| Polypeptide deformylase [Shewanella piezotolerans WP3]
Length = 170
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL ++ +PD RL+ +A+PITEF+ L+ I +M ETMY GIGLAA+QVD H+QL++
Sbjct: 1 MSLLKVLRFPDERLRTVAKPITEFNAALQTQIDDMFETMYEEKGIGLAATQVDFHQQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ ++ +VFIN +II S + EGCLS+PGI+ K+ R++ + + AL+ +G F
Sbjct: 61 MDLQDEIDRPKVFINLEIIAKSGDF-CNEEGCLSVPGIYAKVDRAEFVTIKALDRDGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ AEGL AICLQHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 120 TLEAEGLFAICLQHELDHLAGKLFVDYLSPLKRQRIKQKLEKAAR 164
>gi|424898026|ref|ZP_18321600.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393182253|gb|EJC82292.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 171
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ ++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPILRQASKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ Q QVFINP+I+ S E+ IY EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSIYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|421728649|ref|ZP_16167801.1| peptide deformylase [Klebsiella oxytoca M5al]
gi|410370558|gb|EKP25287.1| peptide deformylase [Klebsiella oxytoca M5al]
Length = 169
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ S E I EGCLS+P + R++++++ AL+ EGK +
Sbjct: 61 IDVSENREEQLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKPY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|402490565|ref|ZP_10837354.1| peptide deformylase [Rhizobium sp. CCGE 510]
gi|401810591|gb|EJT02964.1| peptide deformylase [Rhizobium sp. CCGE 510]
Length = 171
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ ++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPVLRQSSKPIERVDADLQRLADDMLETMYDAPGIGLAAVQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DI++ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDIAREGEERQPQVFINPEIVTSSDERSVYEEGCLSIPDYYAEVERPAIVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|83404829|ref|YP_424843.1| peptide deformylase [Escherichia coli]
gi|157149370|ref|YP_001451409.1| peptide deformylase [Escherichia coli E24377A]
gi|298206469|ref|YP_003717571.1| peptide deformylase [Escherichia coli ETEC 1392/75]
gi|419281279|ref|ZP_13823506.1| peptide deformylase [Escherichia coli DEC10E]
gi|419384110|ref|ZP_13925032.1| peptide deformylase [Escherichia coli DEC14D]
gi|420389199|ref|ZP_14888473.1| peptide deformylase [Escherichia coli EPEC C342-62]
gi|83308554|emb|CAI79523.1| peptide deformylase [Escherichia coli]
gi|157076537|gb|ABV16250.1| peptide deformylase [Escherichia coli E24377A]
gi|297374341|emb|CBL93313.1| peptide deformylase [Escherichia coli ETEC 1392/75]
gi|378121946|gb|EHW83393.1| peptide deformylase [Escherichia coli DEC10E]
gi|378239477|gb|EHX99462.1| peptide deformylase [Escherichia coli DEC14D]
gi|391315432|gb|EIQ72956.1| peptide deformylase [Escherichia coli EPEC C342-62]
Length = 169
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|329295654|ref|ZP_08252990.1| peptide deformylase [Plautia stali symbiont]
Length = 170
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+KIA P+ + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDDRLRKIAAPVAAVNADVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + V INP+++ S E + EGCLS+P + R++R++V AL+ +G F
Sbjct: 61 IDVSESREERLVLINPELLEKSGETGM-EEGCLSIPEQRAFVPRAERVKVRALDRDGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLAIC+QHE+DHL+GK+FI+YLS K++RI +K K
Sbjct: 120 ELETDGLLAICIQHELDHLDGKLFIDYLSPLKRQRIKQKLEK 161
>gi|395233958|ref|ZP_10412192.1| peptide deformylase [Enterobacter sp. Ag1]
gi|394731580|gb|EJF31339.1| peptide deformylase [Enterobacter sp. Ag1]
Length = 169
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L +++ PD RL+K+A+P+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MAFLQVLHIPDERLRKVAKPVEEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDEQLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|424915776|ref|ZP_18339140.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392851952|gb|EJB04473.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 171
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ ++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPILRQASKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|161506040|ref|YP_001573152.1| peptide deformylase [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|189083077|sp|A9MN80.1|DEF_SALAR RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|160867387|gb|ABX24010.1| hypothetical protein SARI_04221 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 169
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N N+ V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSENRNERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|15803814|ref|NP_289848.1| peptide deformylase [Escherichia coli O157:H7 str. EDL933]
gi|15833406|ref|NP_312179.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai]
gi|16131166|ref|NP_417745.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655]
gi|26249871|ref|NP_755911.1| peptide deformylase [Escherichia coli CFT073]
gi|82545649|ref|YP_409596.1| peptide deformylase [Shigella boydii Sb227]
gi|82778584|ref|YP_404933.1| peptide deformylase [Shigella dysenteriae Sd197]
gi|91212713|ref|YP_542699.1| peptide deformylase [Escherichia coli UTI89]
gi|110643525|ref|YP_671255.1| peptide deformylase [Escherichia coli 536]
gi|117625569|ref|YP_858892.1| peptide deformylase [Escherichia coli APEC O1]
gi|157156138|ref|YP_001464754.1| peptide deformylase [Escherichia coli E24377A]
gi|157162760|ref|YP_001460078.1| peptide deformylase [Escherichia coli HS]
gi|168752265|ref|ZP_02777287.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113]
gi|168758514|ref|ZP_02783521.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401]
gi|168764969|ref|ZP_02789976.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501]
gi|168769148|ref|ZP_02794155.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486]
gi|168777856|ref|ZP_02802863.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196]
gi|168783853|ref|ZP_02808860.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076]
gi|168786176|ref|ZP_02811183.1| peptide deformylase [Escherichia coli O157:H7 str. EC869]
gi|170018478|ref|YP_001723432.1| peptide deformylase [Escherichia coli ATCC 8739]
gi|170082807|ref|YP_001732127.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B]
gi|170769511|ref|ZP_02903964.1| peptide deformylase [Escherichia albertii TW07627]
gi|191169294|ref|ZP_03031043.1| peptide deformylase [Escherichia coli B7A]
gi|191174456|ref|ZP_03035957.1| peptide deformylase [Escherichia coli F11]
gi|193066484|ref|ZP_03047528.1| peptide deformylase [Escherichia coli E22]
gi|193071544|ref|ZP_03052453.1| peptide deformylase [Escherichia coli E110019]
gi|194430283|ref|ZP_03062778.1| peptide deformylase [Escherichia coli B171]
gi|194435085|ref|ZP_03067323.1| peptide deformylase [Shigella dysenteriae 1012]
gi|194439997|ref|ZP_03072055.1| peptide deformylase [Escherichia coli 101-1]
gi|195939834|ref|ZP_03085216.1| peptide deformylase [Escherichia coli O157:H7 str. EC4024]
gi|208806494|ref|ZP_03248831.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206]
gi|208814593|ref|ZP_03255922.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045]
gi|208821413|ref|ZP_03261733.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042]
gi|209400361|ref|YP_002272743.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115]
gi|209920752|ref|YP_002294836.1| peptide deformylase [Escherichia coli SE11]
gi|215488586|ref|YP_002331017.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69]
gi|217325115|ref|ZP_03441199.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588]
gi|218550562|ref|YP_002384353.1| peptide deformylase [Escherichia fergusonii ATCC 35469]
gi|218555844|ref|YP_002388757.1| peptide deformylase [Escherichia coli IAI1]
gi|218560348|ref|YP_002393261.1| peptide deformylase [Escherichia coli S88]
gi|218691573|ref|YP_002399785.1| peptide deformylase [Escherichia coli ED1a]
gi|218696979|ref|YP_002404646.1| peptide deformylase [Escherichia coli 55989]
gi|218706894|ref|YP_002414413.1| peptide deformylase [Escherichia coli UMN026]
gi|222157990|ref|YP_002558129.1| Peptide deformylase [Escherichia coli LF82]
gi|227883418|ref|ZP_04001223.1| peptide deformylase [Escherichia coli 83972]
gi|237703016|ref|ZP_04533497.1| peptide deformylase [Escherichia sp. 3_2_53FAA]
gi|238902377|ref|YP_002928173.1| peptide deformylase [Escherichia coli BW2952]
gi|251786540|ref|YP_003000844.1| peptide deformylase [Escherichia coli BL21(DE3)]
gi|253771890|ref|YP_003034721.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254163214|ref|YP_003046322.1| peptide deformylase [Escherichia coli B str. REL606]
gi|254289964|ref|YP_003055712.1| peptide deformylase [Escherichia coli BL21(DE3)]
gi|254795223|ref|YP_003080060.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359]
gi|260846084|ref|YP_003223862.1| peptide deformylase [Escherichia coli O103:H2 str. 12009]
gi|261224591|ref|ZP_05938872.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK2000]
gi|261254515|ref|ZP_05947048.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK966]
gi|293406884|ref|ZP_06650808.1| peptide deformylase [Escherichia coli FVEC1412]
gi|293412705|ref|ZP_06655373.1| peptide deformylase [Escherichia coli B354]
gi|293416705|ref|ZP_06659342.1| peptide deformylase [Escherichia coli B185]
gi|293453605|ref|ZP_06664024.1| peptide deformylase [Escherichia coli B088]
gi|297517904|ref|ZP_06936290.1| peptide deformylase [Escherichia coli OP50]
gi|298382625|ref|ZP_06992220.1| def [Escherichia coli FVEC1302]
gi|300815503|ref|ZP_07095728.1| peptide deformylase [Escherichia coli MS 107-1]
gi|300896634|ref|ZP_07115151.1| peptide deformylase [Escherichia coli MS 198-1]
gi|300903535|ref|ZP_07121457.1| peptide deformylase [Escherichia coli MS 84-1]
gi|300918261|ref|ZP_07134865.1| peptide deformylase [Escherichia coli MS 115-1]
gi|300921905|ref|ZP_07138060.1| peptide deformylase [Escherichia coli MS 182-1]
gi|300932179|ref|ZP_07147459.1| peptide deformylase [Escherichia coli MS 187-1]
gi|300973966|ref|ZP_07172373.1| peptide deformylase [Escherichia coli MS 200-1]
gi|300979823|ref|ZP_07174725.1| peptide deformylase [Escherichia coli MS 45-1]
gi|301018856|ref|ZP_07183095.1| peptide deformylase [Escherichia coli MS 69-1]
gi|301021204|ref|ZP_07185238.1| peptide deformylase [Escherichia coli MS 196-1]
gi|301046057|ref|ZP_07193236.1| peptide deformylase [Escherichia coli MS 185-1]
gi|301305496|ref|ZP_07211588.1| peptide deformylase [Escherichia coli MS 124-1]
gi|301325148|ref|ZP_07218680.1| peptide deformylase [Escherichia coli MS 78-1]
gi|301643894|ref|ZP_07243924.1| peptide deformylase [Escherichia coli MS 146-1]
gi|306816371|ref|ZP_07450509.1| peptide deformylase [Escherichia coli NC101]
gi|307315135|ref|ZP_07594718.1| peptide deformylase [Escherichia coli W]
gi|309794562|ref|ZP_07688984.1| peptide deformylase [Escherichia coli MS 145-7]
gi|312968388|ref|ZP_07782598.1| peptide deformylase [Escherichia coli 2362-75]
gi|312972452|ref|ZP_07786626.1| peptide deformylase [Escherichia coli 1827-70]
gi|331643982|ref|ZP_08345111.1| peptide deformylase [Escherichia coli H736]
gi|331649083|ref|ZP_08350169.1| peptide deformylase [Escherichia coli M605]
gi|331654879|ref|ZP_08355878.1| peptide deformylase [Escherichia coli M718]
gi|331659577|ref|ZP_08360515.1| peptide deformylase [Escherichia coli TA206]
gi|331664899|ref|ZP_08365800.1| peptide deformylase [Escherichia coli TA143]
gi|331670116|ref|ZP_08370955.1| peptide deformylase [Escherichia coli TA271]
gi|331679355|ref|ZP_08380025.1| peptide deformylase [Escherichia coli H591]
gi|332281841|ref|ZP_08394254.1| peptide deformylase [Shigella sp. D9]
gi|366161351|ref|ZP_09461213.1| peptide deformylase [Escherichia sp. TW09308]
gi|378711274|ref|YP_005276167.1| peptide deformylase [Escherichia coli KO11FL]
gi|386283046|ref|ZP_10060686.1| peptide deformylase [Escherichia sp. 4_1_40B]
gi|386594006|ref|YP_006090406.1| peptide deformylase [Escherichia coli DH1]
gi|386601305|ref|YP_006102811.1| peptide deformylase [Escherichia coli IHE3034]
gi|386605837|ref|YP_006112137.1| peptide deformylase [Escherichia coli UM146]
gi|386610661|ref|YP_006126147.1| peptide deformylase [Escherichia coli W]
gi|386616065|ref|YP_006135731.1| peptide deformylase [Escherichia coli UMNK88]
gi|386620894|ref|YP_006140474.1| Peptide deformylase [Escherichia coli NA114]
gi|386631166|ref|YP_006150886.1| peptide deformylase [Escherichia coli str. 'clone D i2']
gi|386636086|ref|YP_006155805.1| peptide deformylase [Escherichia coli str. 'clone D i14']
gi|386640882|ref|YP_006107680.1| peptide deformylase [Escherichia coli ABU 83972]
gi|386699760|ref|YP_006163597.1| peptide deformylase [Escherichia coli KO11FL]
gi|386706529|ref|YP_006170376.1| Peptide deformylase [Escherichia coli P12b]
gi|386711179|ref|YP_006174900.1| peptide deformylase [Escherichia coli W]
gi|387608993|ref|YP_006097849.1| polypeptide deformylase [Escherichia coli 042]
gi|387613962|ref|YP_006117078.1| polypeptide deformylase [Escherichia coli ETEC H10407]
gi|387618576|ref|YP_006121598.1| peptide deformylase [Escherichia coli O83:H1 str. NRG 857C]
gi|387622938|ref|YP_006130566.1| peptide deformylase [Escherichia coli DH1]
gi|387831164|ref|YP_003351101.1| polypeptide deformylase [Escherichia coli SE15]
gi|387884456|ref|YP_006314758.1| peptide deformylase [Escherichia coli Xuzhou21]
gi|388479952|ref|YP_492146.1| peptide deformylase [Escherichia coli str. K-12 substr. W3110]
gi|404376656|ref|ZP_10981810.1| peptide deformylase [Escherichia sp. 1_1_43]
gi|407471249|ref|YP_006782308.1| peptide deformylase [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407480095|ref|YP_006777244.1| peptide deformylase [Escherichia coli O104:H4 str. 2011C-3493]
gi|410480656|ref|YP_006768202.1| peptide deformylase [Escherichia coli O104:H4 str. 2009EL-2050]
gi|415776511|ref|ZP_11488032.1| peptide deformylase [Escherichia coli 3431]
gi|415795750|ref|ZP_11497263.1| peptide deformylase [Escherichia coli E128010]
gi|415830869|ref|ZP_11516667.1| peptide deformylase [Escherichia coli OK1357]
gi|415839121|ref|ZP_11520939.1| peptide deformylase [Escherichia coli RN587/1]
gi|415862909|ref|ZP_11536270.1| peptide deformylase [Escherichia coli MS 85-1]
gi|415879132|ref|ZP_11544592.1| peptide deformylase [Escherichia coli MS 79-10]
gi|416272755|ref|ZP_11643238.1| Peptide deformylase [Shigella dysenteriae CDC 74-1112]
gi|416278431|ref|ZP_11644588.1| Peptide deformylase [Shigella boydii ATCC 9905]
gi|416293272|ref|ZP_11650383.1| Peptide deformylase [Shigella flexneri CDC 796-83]
gi|416311800|ref|ZP_11657197.1| Peptide deformylase [Escherichia coli O157:H7 str. 1044]
gi|416320323|ref|ZP_11662875.1| Peptide deformylase [Escherichia coli O157:H7 str. EC1212]
gi|416326431|ref|ZP_11666640.1| Peptide deformylase [Escherichia coli O157:H7 str. 1125]
gi|416336394|ref|ZP_11672957.1| Peptide deformylase [Escherichia coli WV_060327]
gi|416344187|ref|ZP_11678061.1| Peptide deformylase [Escherichia coli EC4100B]
gi|416777934|ref|ZP_11875506.1| peptide deformylase [Escherichia coli O157:H7 str. G5101]
gi|416789218|ref|ZP_11880349.1| peptide deformylase [Escherichia coli O157:H- str. 493-89]
gi|416801081|ref|ZP_11885254.1| peptide deformylase [Escherichia coli O157:H- str. H 2687]
gi|416811982|ref|ZP_11890203.1| peptide deformylase [Escherichia coli O55:H7 str. 3256-97]
gi|416832657|ref|ZP_11899820.1| peptide deformylase [Escherichia coli O157:H7 str. LSU-61]
gi|416899675|ref|ZP_11929081.1| peptide deformylase [Escherichia coli STEC_7v]
gi|417087031|ref|ZP_11954078.1| Chloro Complex [Escherichia coli cloneA_i1]
gi|417117245|ref|ZP_11968106.1| peptide deformylase [Escherichia coli 1.2741]
gi|417135827|ref|ZP_11980612.1| peptide deformylase [Escherichia coli 5.0588]
gi|417141288|ref|ZP_11984201.1| peptide deformylase [Escherichia coli 97.0259]
gi|417146630|ref|ZP_11987477.1| peptide deformylase [Escherichia coli 1.2264]
gi|417157342|ref|ZP_11994966.1| peptide deformylase [Escherichia coli 96.0497]
gi|417162700|ref|ZP_11998030.1| peptide deformylase [Escherichia coli 99.0741]
gi|417175898|ref|ZP_12005694.1| peptide deformylase [Escherichia coli 3.2608]
gi|417184084|ref|ZP_12009776.1| peptide deformylase [Escherichia coli 93.0624]
gi|417222116|ref|ZP_12025556.1| peptide deformylase [Escherichia coli 96.154]
gi|417228338|ref|ZP_12030096.1| peptide deformylase [Escherichia coli 5.0959]
gi|417240632|ref|ZP_12036822.1| peptide deformylase [Escherichia coli 9.0111]
gi|417249513|ref|ZP_12041297.1| peptide deformylase [Escherichia coli 4.0967]
gi|417264173|ref|ZP_12051567.1| peptide deformylase [Escherichia coli 2.3916]
gi|417268059|ref|ZP_12055420.1| peptide deformylase [Escherichia coli 3.3884]
gi|417272595|ref|ZP_12059944.1| peptide deformylase [Escherichia coli 2.4168]
gi|417275941|ref|ZP_12063273.1| peptide deformylase [Escherichia coli 3.2303]
gi|417280539|ref|ZP_12067839.1| peptide deformylase [Escherichia coli 3003]
gi|417309803|ref|ZP_12096632.1| Peptide deformylase 1 [Escherichia coli PCN033]
gi|417582894|ref|ZP_12233694.1| peptide deformylase [Escherichia coli STEC_B2F1]
gi|417588389|ref|ZP_12239152.1| peptide deformylase [Escherichia coli STEC_C165-02]
gi|417598681|ref|ZP_12249308.1| peptide deformylase [Escherichia coli 3030-1]
gi|417604160|ref|ZP_12254724.1| peptide deformylase [Escherichia coli STEC_94C]
gi|417605415|ref|ZP_12255965.1| peptide deformylase [Escherichia coli STEC_DG131-3]
gi|417625366|ref|ZP_12275657.1| peptide deformylase [Escherichia coli STEC_H.1.8]
gi|417627050|ref|ZP_12277301.1| peptide deformylase [Escherichia coli STEC_MHI813]
gi|417636376|ref|ZP_12286585.1| peptide deformylase [Escherichia coli STEC_S1191]
gi|417641186|ref|ZP_12291318.1| peptide deformylase [Escherichia coli TX1999]
gi|417663858|ref|ZP_12313438.1| peptide deformylase [Escherichia coli AA86]
gi|417668765|ref|ZP_12318305.1| peptide deformylase [Escherichia coli STEC_O31]
gi|417674231|ref|ZP_12323666.1| peptide deformylase [Shigella dysenteriae 155-74]
gi|417684057|ref|ZP_12333398.1| peptide deformylase [Shigella boydii 3594-74]
gi|417691630|ref|ZP_12340839.1| peptide deformylase [Shigella boydii 5216-82]
gi|417757630|ref|ZP_12405695.1| peptide deformylase [Escherichia coli DEC2B]
gi|417806927|ref|ZP_12453859.1| peptide deformylase [Escherichia coli O104:H4 str. LB226692]
gi|417834673|ref|ZP_12481115.1| peptide deformylase [Escherichia coli O104:H4 str. 01-09591]
gi|417866398|ref|ZP_12511439.1| hypothetical protein C22711_3327 [Escherichia coli O104:H4 str.
C227-11]
gi|417946708|ref|ZP_12589919.1| peptide deformylase [Escherichia coli XH140A]
gi|417978400|ref|ZP_12619168.1| peptide deformylase [Escherichia coli XH001]
gi|418040827|ref|ZP_12679060.1| peptide deformylase [Escherichia coli W26]
gi|418304910|ref|ZP_12916704.1| peptide deformylase [Escherichia coli UMNF18]
gi|418942234|ref|ZP_13495522.1| peptide deformylase [Escherichia coli O157:H43 str. T22]
gi|419004005|ref|ZP_13551517.1| peptide deformylase [Escherichia coli DEC1B]
gi|419009679|ref|ZP_13557097.1| peptide deformylase [Escherichia coli DEC1C]
gi|419015264|ref|ZP_13562603.1| peptide deformylase [Escherichia coli DEC1D]
gi|419020309|ref|ZP_13567608.1| peptide deformylase [Escherichia coli DEC1E]
gi|419025773|ref|ZP_13572992.1| peptide deformylase [Escherichia coli DEC2A]
gi|419030903|ref|ZP_13578051.1| peptide deformylase [Escherichia coli DEC2C]
gi|419036534|ref|ZP_13583610.1| peptide deformylase [Escherichia coli DEC2D]
gi|419041607|ref|ZP_13588625.1| peptide deformylase [Escherichia coli DEC2E]
gi|419047432|ref|ZP_13594364.1| peptide deformylase [Escherichia coli DEC3A]
gi|419053053|ref|ZP_13599920.1| peptide deformylase [Escherichia coli DEC3B]
gi|419060199|ref|ZP_13606990.1| peptide deformylase [Escherichia coli DEC3C]
gi|419064552|ref|ZP_13611272.1| peptide deformylase [Escherichia coli DEC3D]
gi|419072615|ref|ZP_13618205.1| peptide deformylase [Escherichia coli DEC3E]
gi|419072801|ref|ZP_13618383.1| peptide deformylase [Escherichia coli DEC3F]
gi|419084025|ref|ZP_13629452.1| peptide deformylase [Escherichia coli DEC4A]
gi|419088358|ref|ZP_13633709.1| peptide deformylase [Escherichia coli DEC4B]
gi|419095244|ref|ZP_13640514.1| peptide deformylase [Escherichia coli DEC4C]
gi|419100158|ref|ZP_13645348.1| peptide deformylase [Escherichia coli DEC4D]
gi|419105901|ref|ZP_13651025.1| peptide deformylase [Escherichia coli DEC4E]
gi|419112057|ref|ZP_13657103.1| peptide deformylase [Escherichia coli DEC4F]
gi|419122538|ref|ZP_13667480.1| peptide deformylase [Escherichia coli DEC5B]
gi|419144363|ref|ZP_13689093.1| peptide deformylase [Escherichia coli DEC6A]
gi|419150328|ref|ZP_13694976.1| peptide deformylase [Escherichia coli DEC6B]
gi|419155753|ref|ZP_13700309.1| peptide deformylase [Escherichia coli DEC6C]
gi|419157197|ref|ZP_13701731.1| peptide deformylase [Escherichia coli DEC6D]
gi|419166153|ref|ZP_13710604.1| peptide deformylase [Escherichia coli DEC6E]
gi|419172118|ref|ZP_13715997.1| peptide deformylase [Escherichia coli DEC7A]
gi|419176944|ref|ZP_13720755.1| peptide deformylase [Escherichia coli DEC7B]
gi|419182680|ref|ZP_13726289.1| peptide deformylase [Escherichia coli DEC7C]
gi|419188299|ref|ZP_13731805.1| peptide deformylase [Escherichia coli DEC7D]
gi|419193427|ref|ZP_13736872.1| peptide deformylase [Escherichia coli DEC7E]
gi|419279923|ref|ZP_13822165.1| peptide deformylase [Escherichia coli DEC10E]
gi|419291477|ref|ZP_13833562.1| peptide deformylase [Escherichia coli DEC11A]
gi|419296765|ref|ZP_13838802.1| peptide deformylase [Escherichia coli DEC11B]
gi|419302281|ref|ZP_13844273.1| peptide deformylase [Escherichia coli DEC11C]
gi|419308293|ref|ZP_13850186.1| peptide deformylase [Escherichia coli DEC11D]
gi|419313321|ref|ZP_13855179.1| peptide deformylase [Escherichia coli DEC11E]
gi|419318729|ref|ZP_13860527.1| peptide deformylase [Escherichia coli DEC12A]
gi|419324995|ref|ZP_13866682.1| peptide deformylase [Escherichia coli DEC12B]
gi|419330939|ref|ZP_13872535.1| peptide deformylase [Escherichia coli DEC12C]
gi|419336425|ref|ZP_13877942.1| peptide deformylase [Escherichia coli DEC12D]
gi|419341835|ref|ZP_13883290.1| peptide deformylase [Escherichia coli DEC12E]
gi|419347034|ref|ZP_13888404.1| peptide deformylase [Escherichia coli DEC13A]
gi|419356967|ref|ZP_13898214.1| peptide deformylase [Escherichia coli DEC13C]
gi|419363203|ref|ZP_13904396.1| peptide deformylase [Escherichia coli DEC13D]
gi|419371867|ref|ZP_13912976.1| peptide deformylase [Escherichia coli DEC14A]
gi|419387993|ref|ZP_13928861.1| peptide deformylase [Escherichia coli DEC14D]
gi|419393434|ref|ZP_13934235.1| peptide deformylase [Escherichia coli DEC15A]
gi|419398534|ref|ZP_13939296.1| peptide deformylase [Escherichia coli DEC15B]
gi|419403816|ref|ZP_13944535.1| peptide deformylase [Escherichia coli DEC15C]
gi|419408974|ref|ZP_13949659.1| peptide deformylase [Escherichia coli DEC15D]
gi|419414524|ref|ZP_13955160.1| peptide deformylase [Escherichia coli DEC15E]
gi|419702113|ref|ZP_14229709.1| peptide deformylase [Escherichia coli SCI-07]
gi|419813383|ref|ZP_14338231.1| peptide deformylase [Escherichia coli O32:H37 str. P4]
gi|419863990|ref|ZP_14386484.1| peptide deformylase [Escherichia coli O103:H25 str. CVM9340]
gi|419872195|ref|ZP_14394236.1| peptide deformylase [Escherichia coli O103:H2 str. CVM9450]
gi|419912484|ref|ZP_14430938.1| peptide deformylase [Escherichia coli KD1]
gi|419918770|ref|ZP_14436948.1| peptide deformylase [Escherichia coli KD2]
gi|419921287|ref|ZP_14439343.1| peptide deformylase [Escherichia coli 541-15]
gi|419926679|ref|ZP_14444427.1| peptide deformylase [Escherichia coli 541-1]
gi|419933796|ref|ZP_14450946.1| peptide deformylase [Escherichia coli 576-1]
gi|419944199|ref|ZP_14460708.1| peptide deformylase [Escherichia coli HM605]
gi|419949211|ref|ZP_14465457.1| peptide deformylase [Escherichia coli CUMT8]
gi|420271735|ref|ZP_14774086.1| peptide deformylase [Escherichia coli PA22]
gi|420277322|ref|ZP_14779602.1| peptide deformylase [Escherichia coli PA40]
gi|420282533|ref|ZP_14784765.1| peptide deformylase [Escherichia coli TW06591]
gi|420288764|ref|ZP_14790946.1| peptide deformylase [Escherichia coli TW10246]
gi|420294430|ref|ZP_14796542.1| peptide deformylase [Escherichia coli TW11039]
gi|420300285|ref|ZP_14802328.1| peptide deformylase [Escherichia coli TW09109]
gi|420306535|ref|ZP_14808523.1| peptide deformylase [Escherichia coli TW10119]
gi|420311939|ref|ZP_14813867.1| peptide deformylase [Escherichia coli EC1738]
gi|420317253|ref|ZP_14819125.1| peptide deformylase [Escherichia coli EC1734]
gi|420327468|ref|ZP_14829213.1| peptide deformylase [Shigella flexneri CCH060]
gi|420349246|ref|ZP_14850626.1| peptide deformylase [Shigella boydii 965-58]
gi|420354783|ref|ZP_14855862.1| peptide deformylase [Shigella boydii 4444-74]
gi|420382328|ref|ZP_14881763.1| peptide deformylase [Shigella dysenteriae 225-75]
gi|420387527|ref|ZP_14886867.1| peptide deformylase [Escherichia coli EPECa12]
gi|420393395|ref|ZP_14892640.1| peptide deformylase [Escherichia coli EPEC C342-62]
gi|421685421|ref|ZP_16125197.1| peptide deformylase [Shigella flexneri 1485-80]
gi|421778035|ref|ZP_16214621.1| peptide deformylase [Escherichia coli AD30]
gi|421820821|ref|ZP_16256300.1| peptide deformylase [Escherichia coli 10.0821]
gi|421826123|ref|ZP_16261476.1| peptide deformylase [Escherichia coli FRIK920]
gi|421832873|ref|ZP_16268153.1| peptide deformylase [Escherichia coli PA7]
gi|422333631|ref|ZP_16414640.1| peptide deformylase [Escherichia coli 4_1_47FAA]
gi|422361614|ref|ZP_16442231.1| peptide deformylase [Escherichia coli MS 110-3]
gi|422364953|ref|ZP_16445462.1| peptide deformylase [Escherichia coli MS 153-1]
gi|422371096|ref|ZP_16451479.1| peptide deformylase [Escherichia coli MS 16-3]
gi|422373689|ref|ZP_16453988.1| peptide deformylase [Escherichia coli MS 60-1]
gi|422379712|ref|ZP_16459898.1| peptide deformylase [Escherichia coli MS 57-2]
gi|422751127|ref|ZP_16805036.1| peptide deformylase [Escherichia coli H252]
gi|422757060|ref|ZP_16810882.1| peptide deformylase [Escherichia coli H263]
gi|422763835|ref|ZP_16817589.1| peptide deformylase [Escherichia coli E1167]
gi|422768926|ref|ZP_16822650.1| peptide deformylase [Escherichia coli E1520]
gi|422773593|ref|ZP_16827277.1| peptide deformylase [Escherichia coli E482]
gi|422778149|ref|ZP_16831800.1| peptide deformylase [Escherichia coli H120]
gi|422784176|ref|ZP_16836959.1| peptide deformylase [Escherichia coli TW10509]
gi|422793329|ref|ZP_16846025.1| peptide deformylase [Escherichia coli TA007]
gi|422801224|ref|ZP_16849720.1| peptide deformylase [Escherichia coli M863]
gi|422807220|ref|ZP_16855650.1| peptide deformylase [Escherichia fergusonii B253]
gi|422818446|ref|ZP_16866658.1| peptide deformylase [Escherichia coli M919]
gi|422836854|ref|ZP_16884888.1| peptide deformylase [Escherichia coli E101]
gi|422841295|ref|ZP_16889264.1| peptide deformylase [Escherichia coli H397]
gi|422960832|ref|ZP_16972025.1| peptide deformylase [Escherichia coli H494]
gi|422973940|ref|ZP_16976037.1| peptide deformylase [Escherichia coli TA124]
gi|422989477|ref|ZP_16980249.1| peptide deformylase [Escherichia coli O104:H4 str. C227-11]
gi|422996372|ref|ZP_16987135.1| peptide deformylase [Escherichia coli O104:H4 str. C236-11]
gi|423001522|ref|ZP_16992275.1| peptide deformylase [Escherichia coli O104:H4 str. 09-7901]
gi|423005181|ref|ZP_16995926.1| peptide deformylase [Escherichia coli O104:H4 str. 04-8351]
gi|423011687|ref|ZP_17002419.1| peptide deformylase [Escherichia coli O104:H4 str. 11-3677]
gi|423020914|ref|ZP_17011621.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4404]
gi|423026079|ref|ZP_17016774.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4522]
gi|423031898|ref|ZP_17022584.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4623]
gi|423034770|ref|ZP_17025448.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423039898|ref|ZP_17030567.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423046582|ref|ZP_17037241.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423055119|ref|ZP_17043925.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423057111|ref|ZP_17045910.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423702788|ref|ZP_17677220.1| peptide deformylase [Escherichia coli H730]
gi|423707573|ref|ZP_17681953.1| peptide deformylase [Escherichia coli B799]
gi|424085899|ref|ZP_17822385.1| peptide deformylase [Escherichia coli FDA517]
gi|424092298|ref|ZP_17828227.1| peptide deformylase [Escherichia coli FRIK1996]
gi|424117771|ref|ZP_17851603.1| peptide deformylase [Escherichia coli PA3]
gi|424149384|ref|ZP_17880754.1| peptide deformylase [Escherichia coli PA15]
gi|424155232|ref|ZP_17886163.1| peptide deformylase [Escherichia coli PA24]
gi|424254404|ref|ZP_17891710.1| peptide deformylase [Escherichia coli PA25]
gi|424451670|ref|ZP_17903338.1| peptide deformylase [Escherichia coli PA32]
gi|424464320|ref|ZP_17914691.1| peptide deformylase [Escherichia coli PA39]
gi|424477126|ref|ZP_17926438.1| peptide deformylase [Escherichia coli PA42]
gi|424482886|ref|ZP_17931861.1| peptide deformylase [Escherichia coli TW07945]
gi|424489066|ref|ZP_17937611.1| peptide deformylase [Escherichia coli TW09098]
gi|424502420|ref|ZP_17949305.1| peptide deformylase [Escherichia coli EC4203]
gi|424508672|ref|ZP_17955053.1| peptide deformylase [Escherichia coli EC4196]
gi|424522224|ref|ZP_17966335.1| peptide deformylase [Escherichia coli TW14301]
gi|424528100|ref|ZP_17971811.1| peptide deformylase [Escherichia coli EC4421]
gi|424534248|ref|ZP_17977591.1| peptide deformylase [Escherichia coli EC4422]
gi|424540301|ref|ZP_17983240.1| peptide deformylase [Escherichia coli EC4013]
gi|424546432|ref|ZP_17988798.1| peptide deformylase [Escherichia coli EC4402]
gi|424552654|ref|ZP_17994493.1| peptide deformylase [Escherichia coli EC4439]
gi|424558839|ref|ZP_18000244.1| peptide deformylase [Escherichia coli EC4436]
gi|424565179|ref|ZP_18006177.1| peptide deformylase [Escherichia coli EC4437]
gi|424577464|ref|ZP_18017512.1| peptide deformylase [Escherichia coli EC1845]
gi|424583283|ref|ZP_18022925.1| peptide deformylase [Escherichia coli EC1863]
gi|425099957|ref|ZP_18502685.1| peptide deformylase [Escherichia coli 3.4870]
gi|425112065|ref|ZP_18513981.1| peptide deformylase [Escherichia coli 6.0172]
gi|425121590|ref|ZP_18523275.1| peptide deformylase [Escherichia coli 8.0569]
gi|425127989|ref|ZP_18529152.1| peptide deformylase [Escherichia coli 8.0586]
gi|425133733|ref|ZP_18534578.1| peptide deformylase [Escherichia coli 8.2524]
gi|425140309|ref|ZP_18540685.1| peptide deformylase [Escherichia coli 10.0833]
gi|425164359|ref|ZP_18563241.1| peptide deformylase [Escherichia coli FDA506]
gi|425170103|ref|ZP_18568571.1| peptide deformylase [Escherichia coli FDA507]
gi|425176162|ref|ZP_18574277.1| peptide deformylase [Escherichia coli FDA504]
gi|425182206|ref|ZP_18579896.1| peptide deformylase [Escherichia coli FRIK1999]
gi|425195239|ref|ZP_18592004.1| peptide deformylase [Escherichia coli NE1487]
gi|425201714|ref|ZP_18597916.1| peptide deformylase [Escherichia coli NE037]
gi|425208099|ref|ZP_18603891.1| peptide deformylase [Escherichia coli FRIK2001]
gi|425213854|ref|ZP_18609249.1| peptide deformylase [Escherichia coli PA4]
gi|425219976|ref|ZP_18614934.1| peptide deformylase [Escherichia coli PA23]
gi|425226524|ref|ZP_18620986.1| peptide deformylase [Escherichia coli PA49]
gi|425232781|ref|ZP_18626816.1| peptide deformylase [Escherichia coli PA45]
gi|425238704|ref|ZP_18632419.1| peptide deformylase [Escherichia coli TT12B]
gi|425244942|ref|ZP_18638243.1| peptide deformylase [Escherichia coli MA6]
gi|425256917|ref|ZP_18649424.1| peptide deformylase [Escherichia coli CB7326]
gi|425263169|ref|ZP_18655165.1| peptide deformylase [Escherichia coli EC96038]
gi|425269168|ref|ZP_18660793.1| peptide deformylase [Escherichia coli 5412]
gi|425274477|ref|ZP_18665874.1| peptide deformylase [Escherichia coli TW15901]
gi|425290424|ref|ZP_18681246.1| peptide deformylase [Escherichia coli 3006]
gi|425296622|ref|ZP_18686785.1| peptide deformylase [Escherichia coli PA38]
gi|425307067|ref|ZP_18696746.1| peptide deformylase [Escherichia coli N1]
gi|425337934|ref|ZP_18725285.1| peptide deformylase [Escherichia coli EC1847]
gi|425356354|ref|ZP_18742416.1| peptide deformylase [Escherichia coli EC1850]
gi|425362315|ref|ZP_18747957.1| peptide deformylase [Escherichia coli EC1856]
gi|425368532|ref|ZP_18753650.1| peptide deformylase [Escherichia coli EC1862]
gi|425387736|ref|ZP_18771290.1| peptide deformylase [Escherichia coli EC1866]
gi|425394388|ref|ZP_18777492.1| peptide deformylase [Escherichia coli EC1868]
gi|425406617|ref|ZP_18788834.1| peptide deformylase [Escherichia coli EC1870]
gi|425413003|ref|ZP_18794761.1| peptide deformylase [Escherichia coli NE098]
gi|425424163|ref|ZP_18805320.1| peptide deformylase [Escherichia coli 0.1288]
gi|427806479|ref|ZP_18973546.1| peptide deformylase [Escherichia coli chi7122]
gi|427811069|ref|ZP_18978134.1| peptide deformylase [Escherichia coli]
gi|428955096|ref|ZP_19026886.1| peptide deformylase [Escherichia coli 88.1042]
gi|428961084|ref|ZP_19032373.1| peptide deformylase [Escherichia coli 89.0511]
gi|428967703|ref|ZP_19038410.1| peptide deformylase [Escherichia coli 90.0091]
gi|428973483|ref|ZP_19043804.1| peptide deformylase [Escherichia coli 90.0039]
gi|428985681|ref|ZP_19055068.1| peptide deformylase [Escherichia coli 93.0055]
gi|428991815|ref|ZP_19060798.1| peptide deformylase [Escherichia coli 93.0056]
gi|429016592|ref|ZP_19083469.1| peptide deformylase [Escherichia coli 95.0943]
gi|429022410|ref|ZP_19088925.1| peptide deformylase [Escherichia coli 96.0428]
gi|429034666|ref|ZP_19100183.1| peptide deformylase [Escherichia coli 96.0939]
gi|429040752|ref|ZP_19105847.1| peptide deformylase [Escherichia coli 96.0932]
gi|429052801|ref|ZP_19117354.1| peptide deformylase [Escherichia coli 97.0003]
gi|429062973|ref|ZP_19126957.1| peptide deformylase [Escherichia coli 97.0007]
gi|429075883|ref|ZP_19139121.1| peptide deformylase [Escherichia coli 99.0678]
gi|429720943|ref|ZP_19255864.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429772840|ref|ZP_19304858.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02030]
gi|429778206|ref|ZP_19310174.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429786512|ref|ZP_19318405.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02092]
gi|429787456|ref|ZP_19319346.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02093]
gi|429793252|ref|ZP_19325098.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02281]
gi|429799832|ref|ZP_19331625.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02318]
gi|429803447|ref|ZP_19335205.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02913]
gi|429808088|ref|ZP_19339808.1| peptide deformylase [Escherichia coli O104:H4 str. 11-03439]
gi|429813788|ref|ZP_19345464.1| peptide deformylase [Escherichia coli O104:H4 str. 11-04080]
gi|429818998|ref|ZP_19350630.1| peptide deformylase [Escherichia coli O104:H4 str. 11-03943]
gi|429834828|ref|ZP_19365126.1| peptide deformylase [Escherichia coli 97.0010]
gi|429905347|ref|ZP_19371323.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429909484|ref|ZP_19375446.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-9941]
gi|429915354|ref|ZP_19381300.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429920401|ref|ZP_19386328.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429926205|ref|ZP_19392116.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429930140|ref|ZP_19396040.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429936678|ref|ZP_19402563.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429942360|ref|ZP_19408232.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429945043|ref|ZP_19410903.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429952598|ref|ZP_19418443.1| peptide deformylase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429955953|ref|ZP_19421783.1| peptide deformylase [Escherichia coli O104:H4 str. Ec12-0466]
gi|432355280|ref|ZP_19598547.1| peptide deformylase [Escherichia coli KTE2]
gi|432359734|ref|ZP_19602947.1| peptide deformylase [Escherichia coli KTE4]
gi|432364532|ref|ZP_19607687.1| peptide deformylase [Escherichia coli KTE5]
gi|432366733|ref|ZP_19609850.1| peptide deformylase [Escherichia coli KTE10]
gi|432373856|ref|ZP_19616887.1| peptide deformylase [Escherichia coli KTE11]
gi|432378461|ref|ZP_19621444.1| peptide deformylase [Escherichia coli KTE12]
gi|432383186|ref|ZP_19626111.1| peptide deformylase [Escherichia coli KTE15]
gi|432389040|ref|ZP_19631920.1| peptide deformylase [Escherichia coli KTE16]
gi|432393878|ref|ZP_19636700.1| peptide deformylase [Escherichia coli KTE21]
gi|432399233|ref|ZP_19642007.1| peptide deformylase [Escherichia coli KTE25]
gi|432403655|ref|ZP_19646399.1| peptide deformylase [Escherichia coli KTE26]
gi|432408358|ref|ZP_19651061.1| peptide deformylase [Escherichia coli KTE28]
gi|432413508|ref|ZP_19656162.1| peptide deformylase [Escherichia coli KTE39]
gi|432418808|ref|ZP_19661401.1| peptide deformylase [Escherichia coli KTE44]
gi|432423692|ref|ZP_19666230.1| peptide deformylase [Escherichia coli KTE178]
gi|432427916|ref|ZP_19670399.1| peptide deformylase [Escherichia coli KTE181]
gi|432433499|ref|ZP_19675923.1| peptide deformylase [Escherichia coli KTE187]
gi|432438095|ref|ZP_19680478.1| peptide deformylase [Escherichia coli KTE188]
gi|432442771|ref|ZP_19685106.1| peptide deformylase [Escherichia coli KTE189]
gi|432447891|ref|ZP_19690187.1| peptide deformylase [Escherichia coli KTE191]
gi|432451518|ref|ZP_19693775.1| peptide deformylase [Escherichia coli KTE193]
gi|432458407|ref|ZP_19700583.1| peptide deformylase [Escherichia coli KTE201]
gi|432462620|ref|ZP_19704753.1| peptide deformylase [Escherichia coli KTE204]
gi|432467598|ref|ZP_19709676.1| peptide deformylase [Escherichia coli KTE205]
gi|432472633|ref|ZP_19714670.1| peptide deformylase [Escherichia coli KTE206]
gi|432477612|ref|ZP_19719601.1| peptide deformylase [Escherichia coli KTE208]
gi|432482607|ref|ZP_19724557.1| peptide deformylase [Escherichia coli KTE210]
gi|432491060|ref|ZP_19732923.1| peptide deformylase [Escherichia coli KTE213]
gi|432497400|ref|ZP_19739192.1| peptide deformylase [Escherichia coli KTE214]
gi|432501841|ref|ZP_19743592.1| peptide deformylase [Escherichia coli KTE216]
gi|432506158|ref|ZP_19747877.1| peptide deformylase [Escherichia coli KTE220]
gi|432515677|ref|ZP_19752892.1| peptide deformylase [Escherichia coli KTE224]
gi|432519474|ref|ZP_19756653.1| peptide deformylase [Escherichia coli KTE228]
gi|432525613|ref|ZP_19762731.1| peptide deformylase [Escherichia coli KTE230]
gi|432528140|ref|ZP_19765216.1| peptide deformylase [Escherichia coli KTE233]
gi|432535651|ref|ZP_19772610.1| peptide deformylase [Escherichia coli KTE234]
gi|432555370|ref|ZP_19792088.1| peptide deformylase [Escherichia coli KTE47]
gi|432560554|ref|ZP_19797209.1| peptide deformylase [Escherichia coli KTE49]
gi|432565652|ref|ZP_19802212.1| peptide deformylase [Escherichia coli KTE51]
gi|432570514|ref|ZP_19807020.1| peptide deformylase [Escherichia coli KTE53]
gi|432575519|ref|ZP_19811990.1| peptide deformylase [Escherichia coli KTE55]
gi|432577513|ref|ZP_19813962.1| peptide deformylase [Escherichia coli KTE56]
gi|432584811|ref|ZP_19821202.1| peptide deformylase [Escherichia coli KTE57]
gi|432589664|ref|ZP_19826016.1| peptide deformylase [Escherichia coli KTE58]
gi|432594480|ref|ZP_19830792.1| peptide deformylase [Escherichia coli KTE60]
gi|432599533|ref|ZP_19835803.1| peptide deformylase [Escherichia coli KTE62]
gi|432604111|ref|ZP_19840341.1| peptide deformylase [Escherichia coli KTE66]
gi|432609320|ref|ZP_19845501.1| peptide deformylase [Escherichia coli KTE67]
gi|432613292|ref|ZP_19849449.1| peptide deformylase [Escherichia coli KTE72]
gi|432628914|ref|ZP_19864882.1| peptide deformylase [Escherichia coli KTE77]
gi|432633152|ref|ZP_19869072.1| peptide deformylase [Escherichia coli KTE80]
gi|432638487|ref|ZP_19874352.1| peptide deformylase [Escherichia coli KTE81]
gi|432642842|ref|ZP_19878667.1| peptide deformylase [Escherichia coli KTE83]
gi|432647959|ref|ZP_19883744.1| peptide deformylase [Escherichia coli KTE86]
gi|432652879|ref|ZP_19888624.1| peptide deformylase [Escherichia coli KTE87]
gi|432657522|ref|ZP_19893218.1| peptide deformylase [Escherichia coli KTE93]
gi|432662491|ref|ZP_19898125.1| peptide deformylase [Escherichia coli KTE111]
gi|432676403|ref|ZP_19911851.1| peptide deformylase [Escherichia coli KTE142]
gi|432687099|ref|ZP_19922389.1| peptide deformylase [Escherichia coli KTE156]
gi|432688556|ref|ZP_19923826.1| peptide deformylase [Escherichia coli KTE161]
gi|432696151|ref|ZP_19931343.1| peptide deformylase [Escherichia coli KTE162]
gi|432700803|ref|ZP_19935947.1| peptide deformylase [Escherichia coli KTE169]
gi|432706020|ref|ZP_19941115.1| peptide deformylase [Escherichia coli KTE171]
gi|432707628|ref|ZP_19942704.1| peptide deformylase [Escherichia coli KTE6]
gi|432715133|ref|ZP_19950160.1| peptide deformylase [Escherichia coli KTE8]
gi|432720408|ref|ZP_19955372.1| peptide deformylase [Escherichia coli KTE9]
gi|432724751|ref|ZP_19959664.1| peptide deformylase [Escherichia coli KTE17]
gi|432729334|ref|ZP_19964208.1| peptide deformylase [Escherichia coli KTE18]
gi|432734037|ref|ZP_19968861.1| peptide deformylase [Escherichia coli KTE45]
gi|432743021|ref|ZP_19977735.1| peptide deformylase [Escherichia coli KTE23]
gi|432747265|ref|ZP_19981926.1| peptide deformylase [Escherichia coli KTE43]
gi|432751752|ref|ZP_19986331.1| peptide deformylase [Escherichia coli KTE29]
gi|432756214|ref|ZP_19990758.1| peptide deformylase [Escherichia coli KTE22]
gi|432761122|ref|ZP_19995612.1| peptide deformylase [Escherichia coli KTE46]
gi|432766680|ref|ZP_20001095.1| peptide deformylase [Escherichia coli KTE48]
gi|432767645|ref|ZP_20002038.1| peptide deformylase [Escherichia coli KTE50]
gi|432772033|ref|ZP_20006347.1| peptide deformylase [Escherichia coli KTE54]
gi|432780294|ref|ZP_20014514.1| peptide deformylase [Escherichia coli KTE59]
gi|432785252|ref|ZP_20019429.1| peptide deformylase [Escherichia coli KTE63]
gi|432789287|ref|ZP_20023414.1| peptide deformylase [Escherichia coli KTE65]
gi|432794498|ref|ZP_20028579.1| peptide deformylase [Escherichia coli KTE78]
gi|432796014|ref|ZP_20030054.1| peptide deformylase [Escherichia coli KTE79]
gi|432803468|ref|ZP_20037420.1| peptide deformylase [Escherichia coli KTE84]
gi|432807535|ref|ZP_20041449.1| peptide deformylase [Escherichia coli KTE91]
gi|432811008|ref|ZP_20044865.1| peptide deformylase [Escherichia coli KTE101]
gi|432822722|ref|ZP_20056410.1| peptide deformylase [Escherichia coli KTE118]
gi|432824176|ref|ZP_20057846.1| peptide deformylase [Escherichia coli KTE123]
gi|432828911|ref|ZP_20062528.1| peptide deformylase [Escherichia coli KTE135]
gi|432841087|ref|ZP_20074546.1| peptide deformylase [Escherichia coli KTE140]
gi|432846366|ref|ZP_20079008.1| peptide deformylase [Escherichia coli KTE141]
gi|432854691|ref|ZP_20082962.1| peptide deformylase [Escherichia coli KTE144]
gi|432865342|ref|ZP_20088439.1| peptide deformylase [Escherichia coli KTE146]
gi|432870772|ref|ZP_20091192.1| peptide deformylase [Escherichia coli KTE147]
gi|432877349|ref|ZP_20095069.1| peptide deformylase [Escherichia coli KTE154]
gi|432888618|ref|ZP_20102331.1| peptide deformylase [Escherichia coli KTE158]
gi|432890732|ref|ZP_20103587.1| peptide deformylase [Escherichia coli KTE165]
gi|432900551|ref|ZP_20110930.1| peptide deformylase [Escherichia coli KTE192]
gi|432906991|ref|ZP_20115467.1| peptide deformylase [Escherichia coli KTE194]
gi|432914857|ref|ZP_20120184.1| peptide deformylase [Escherichia coli KTE190]
gi|432922418|ref|ZP_20125262.1| peptide deformylase [Escherichia coli KTE173]
gi|432929148|ref|ZP_20130198.1| peptide deformylase [Escherichia coli KTE175]
gi|432930657|ref|ZP_20131065.1| peptide deformylase [Escherichia coli KTE184]
gi|432940096|ref|ZP_20138010.1| peptide deformylase [Escherichia coli KTE183]
gi|432949481|ref|ZP_20144262.1| peptide deformylase [Escherichia coli KTE196]
gi|432957137|ref|ZP_20148640.1| peptide deformylase [Escherichia coli KTE197]
gi|432963802|ref|ZP_20153149.1| peptide deformylase [Escherichia coli KTE202]
gi|432965057|ref|ZP_20153981.1| peptide deformylase [Escherichia coli KTE203]
gi|432973562|ref|ZP_20162405.1| peptide deformylase [Escherichia coli KTE207]
gi|432975487|ref|ZP_20164321.1| peptide deformylase [Escherichia coli KTE209]
gi|432982730|ref|ZP_20171500.1| peptide deformylase [Escherichia coli KTE211]
gi|432987134|ref|ZP_20175846.1| peptide deformylase [Escherichia coli KTE215]
gi|432992385|ref|ZP_20181043.1| peptide deformylase [Escherichia coli KTE217]
gi|432997047|ref|ZP_20185629.1| peptide deformylase [Escherichia coli KTE218]
gi|433001644|ref|ZP_20190162.1| peptide deformylase [Escherichia coli KTE223]
gi|433006867|ref|ZP_20195290.1| peptide deformylase [Escherichia coli KTE227]
gi|433009482|ref|ZP_20197894.1| peptide deformylase [Escherichia coli KTE229]
gi|433015586|ref|ZP_20203920.1| peptide deformylase [Escherichia coli KTE104]
gi|433020417|ref|ZP_20208572.1| peptide deformylase [Escherichia coli KTE105]
gi|433025151|ref|ZP_20213124.1| peptide deformylase [Escherichia coli KTE106]
gi|433030197|ref|ZP_20218047.1| peptide deformylase [Escherichia coli KTE109]
gi|433035166|ref|ZP_20222864.1| peptide deformylase [Escherichia coli KTE112]
gi|433040285|ref|ZP_20227876.1| peptide deformylase [Escherichia coli KTE113]
gi|433044818|ref|ZP_20232304.1| peptide deformylase [Escherichia coli KTE117]
gi|433049721|ref|ZP_20237055.1| peptide deformylase [Escherichia coli KTE120]
gi|433054910|ref|ZP_20242076.1| peptide deformylase [Escherichia coli KTE122]
gi|433059767|ref|ZP_20246803.1| peptide deformylase [Escherichia coli KTE124]
gi|433064727|ref|ZP_20251637.1| peptide deformylase [Escherichia coli KTE125]
gi|433069601|ref|ZP_20256374.1| peptide deformylase [Escherichia coli KTE128]
gi|433074537|ref|ZP_20261178.1| peptide deformylase [Escherichia coli KTE129]
gi|433079472|ref|ZP_20265991.1| peptide deformylase [Escherichia coli KTE131]
gi|433084212|ref|ZP_20270659.1| peptide deformylase [Escherichia coli KTE133]
gi|433088936|ref|ZP_20275301.1| peptide deformylase [Escherichia coli KTE137]
gi|433093662|ref|ZP_20279918.1| peptide deformylase [Escherichia coli KTE138]
gi|433098086|ref|ZP_20284261.1| peptide deformylase [Escherichia coli KTE139]
gi|433102872|ref|ZP_20288944.1| peptide deformylase [Escherichia coli KTE145]
gi|433107534|ref|ZP_20293498.1| peptide deformylase [Escherichia coli KTE148]
gi|433112517|ref|ZP_20298372.1| peptide deformylase [Escherichia coli KTE150]
gi|433117162|ref|ZP_20302947.1| peptide deformylase [Escherichia coli KTE153]
gi|433121849|ref|ZP_20307509.1| peptide deformylase [Escherichia coli KTE157]
gi|433126851|ref|ZP_20312397.1| peptide deformylase [Escherichia coli KTE160]
gi|433131834|ref|ZP_20317263.1| peptide deformylase [Escherichia coli KTE163]
gi|433136522|ref|ZP_20321854.1| peptide deformylase [Escherichia coli KTE166]
gi|433140915|ref|ZP_20326160.1| peptide deformylase [Escherichia coli KTE167]
gi|433145890|ref|ZP_20331023.1| peptide deformylase [Escherichia coli KTE168]
gi|433150920|ref|ZP_20335920.1| peptide deformylase [Escherichia coli KTE174]
gi|433155432|ref|ZP_20340364.1| peptide deformylase [Escherichia coli KTE176]
gi|433160387|ref|ZP_20345213.1| peptide deformylase [Escherichia coli KTE177]
gi|433165273|ref|ZP_20350003.1| peptide deformylase [Escherichia coli KTE179]
gi|433180107|ref|ZP_20364492.1| peptide deformylase [Escherichia coli KTE82]
gi|433185000|ref|ZP_20369237.1| peptide deformylase [Escherichia coli KTE85]
gi|433190091|ref|ZP_20374179.1| peptide deformylase [Escherichia coli KTE88]
gi|433200030|ref|ZP_20383917.1| peptide deformylase [Escherichia coli KTE94]
gi|433205003|ref|ZP_20388753.1| peptide deformylase [Escherichia coli KTE95]
gi|433209409|ref|ZP_20393076.1| peptide deformylase [Escherichia coli KTE97]
gi|433214260|ref|ZP_20397842.1| peptide deformylase [Escherichia coli KTE99]
gi|433325905|ref|ZP_20402911.1| peptide deformylase [Escherichia coli J96]
gi|442592588|ref|ZP_21010562.1| Peptide deformylase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442599334|ref|ZP_21017054.1| Peptide deformylase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|442607477|ref|ZP_21022247.1| Peptide deformylase [Escherichia coli Nissle 1917]
gi|443619349|ref|YP_007383205.1| peptide deformylase [Escherichia coli APEC O78]
gi|444926906|ref|ZP_21246179.1| peptide deformylase [Escherichia coli 09BKT078844]
gi|444933351|ref|ZP_21252344.1| peptide deformylase [Escherichia coli 99.0814]
gi|444939297|ref|ZP_21257993.1| peptide deformylase [Escherichia coli 99.0815]
gi|444944311|ref|ZP_21262784.1| peptide deformylase [Escherichia coli 99.0816]
gi|444960930|ref|ZP_21278737.1| peptide deformylase [Escherichia coli 99.1753]
gi|444976628|ref|ZP_21293726.1| peptide deformylase [Escherichia coli 99.1805]
gi|444982703|ref|ZP_21299598.1| peptide deformylase [Escherichia coli ATCC 700728]
gi|444987510|ref|ZP_21304282.1| peptide deformylase [Escherichia coli PA11]
gi|444994080|ref|ZP_21310696.1| peptide deformylase [Escherichia coli PA13]
gi|445004354|ref|ZP_21320729.1| peptide deformylase [Escherichia coli PA2]
gi|445009503|ref|ZP_21325724.1| peptide deformylase [Escherichia coli PA47]
gi|445015555|ref|ZP_21331632.1| peptide deformylase [Escherichia coli PA48]
gi|445015777|ref|ZP_21331840.1| peptide deformylase [Escherichia coli PA8]
gi|445030849|ref|ZP_21346513.1| peptide deformylase [Escherichia coli 99.1781]
gi|445036878|ref|ZP_21352394.1| peptide deformylase [Escherichia coli 99.1762]
gi|445047159|ref|ZP_21362403.1| peptide deformylase [Escherichia coli 3.4880]
gi|445054026|ref|ZP_21368995.1| peptide deformylase [Escherichia coli 99.0670]
gi|450222936|ref|ZP_21896995.1| peptide deformylase [Escherichia coli O08]
gi|450251206|ref|ZP_21901754.1| peptide deformylase [Escherichia coli S17]
gi|452971242|ref|ZP_21969469.1| peptide deformylase [Escherichia coli O157:H7 str. EC4009]
gi|62288071|sp|P0A6K3.2|DEF_ECOLI RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|62288072|sp|P0A6K4.2|DEF_ECOL6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|62288073|sp|P0A6K5.2|DEF_ECO57 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|122990717|sp|Q1R646.1|DEF_ECOUT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123048786|sp|Q0TCH5.1|DEF_ECOL5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123728325|sp|Q31VZ0.1|DEF_SHIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123769545|sp|Q32B63.1|DEF_SHIDS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|158512616|sp|A1AGH8.1|DEF_ECOK1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|167012062|sp|A8A591.1|DEF_ECOHS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189083070|sp|B1IQ13.1|DEF_ECOLC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|229487486|sp|B1X6D9.1|DEF_ECODH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238058209|sp|B6I200.1|DEF_ECOSE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238058220|sp|B5YT06.1|DEF_ECO5E RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767581|sp|B7UK10.1|DEF_ECO27 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767582|sp|B7MCQ2.1|DEF_ECO45 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767583|sp|B7LHY3.1|DEF_ECO55 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767585|sp|B7N171.1|DEF_ECO81 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767586|sp|B7M0Z2.1|DEF_ECO8A RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767587|sp|B7NDQ8.1|DEF_ECOLU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767589|sp|B7LRQ3.1|DEF_ESCF3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|259645179|sp|C4ZUE1.1|DEF_ECOBW RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|266618787|pdb|3K6L|A Chain A, The Structure Of E.Coli Peptide Deformylase (Pdf) In
Complex With Peptidomimetic Ligand Bb2827
gi|266618788|pdb|3K6L|B Chain B, The Structure Of E.Coli Peptide Deformylase (Pdf) In
Complex With Peptidomimetic Ligand Bb2827
gi|266618789|pdb|3K6L|C Chain C, The Structure Of E.Coli Peptide Deformylase (Pdf) In
Complex With Peptidomimetic Ligand Bb2827
gi|12517916|gb|AAG58408.1|AE005556_1 peptide deformylase [Escherichia coli O157:H7 str. EDL933]
gi|26110299|gb|AAN82485.1|AE016767_245 Peptide deformylase [Escherichia coli CFT073]
gi|41474|emb|CAA45206.1| fms [Escherichia coli K-12]
gi|443989|emb|CAA54367.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli K-12]
gi|471304|emb|CAA54826.1| deformylase [Escherichia coli]
gi|606221|gb|AAA58084.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli str.
K-12 substr. MG1655]
gi|1789682|gb|AAC76312.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655]
gi|13363625|dbj|BAB37575.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai]
gi|81242732|gb|ABB63442.1| peptide deformylase [Shigella dysenteriae Sd197]
gi|81247060|gb|ABB67768.1| peptide deformylase [Shigella boydii Sb227]
gi|85676755|dbj|BAE78005.1| peptide deformylase [Escherichia coli str. K12 substr. W3110]
gi|91074287|gb|ABE09168.1| peptide deformylase [Escherichia coli UTI89]
gi|110345117|gb|ABG71354.1| peptide deformylase [Escherichia coli 536]
gi|115514693|gb|ABJ02768.1| peptide deformylase [Escherichia coli APEC O1]
gi|157068440|gb|ABV07695.1| peptide deformylase [Escherichia coli HS]
gi|157078168|gb|ABV17876.1| peptide deformylase [Escherichia coli E24377A]
gi|169753406|gb|ACA76105.1| peptide deformylase [Escherichia coli ATCC 8739]
gi|169890642|gb|ACB04349.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B]
gi|170121568|gb|EDS90499.1| peptide deformylase [Escherichia albertii TW07627]
gi|187766994|gb|EDU30838.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196]
gi|188013857|gb|EDU51979.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113]
gi|188998869|gb|EDU67855.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076]
gi|189354695|gb|EDU73114.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401]
gi|189361833|gb|EDU80252.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486]
gi|189365123|gb|EDU83539.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501]
gi|189374112|gb|EDU92528.1| peptide deformylase [Escherichia coli O157:H7 str. EC869]
gi|190900649|gb|EDV60449.1| peptide deformylase [Escherichia coli B7A]
gi|190905264|gb|EDV64902.1| peptide deformylase [Escherichia coli F11]
gi|192925865|gb|EDV80515.1| peptide deformylase [Escherichia coli E22]
gi|192955132|gb|EDV85626.1| peptide deformylase [Escherichia coli E110019]
gi|194411672|gb|EDX27999.1| peptide deformylase [Escherichia coli B171]
gi|194416692|gb|EDX32823.1| peptide deformylase [Shigella dysenteriae 1012]
gi|194421049|gb|EDX37078.1| peptide deformylase [Escherichia coli 101-1]
gi|208726295|gb|EDZ75896.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206]
gi|208735870|gb|EDZ84557.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045]
gi|208741536|gb|EDZ89218.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042]
gi|209161761|gb|ACI39194.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115]
gi|209757358|gb|ACI76991.1| peptide deformylase [Escherichia coli]
gi|209757360|gb|ACI76992.1| peptide deformylase [Escherichia coli]
gi|209757362|gb|ACI76993.1| peptide deformylase [Escherichia coli]
gi|209757366|gb|ACI76995.1| peptide deformylase [Escherichia coli]
gi|209914011|dbj|BAG79085.1| polypeptide deformylase [Escherichia coli SE11]
gi|215266658|emb|CAS11097.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69]
gi|217321336|gb|EEC29760.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588]
gi|218353711|emb|CAU99982.1| peptide deformylase [Escherichia coli 55989]
gi|218358103|emb|CAQ90750.1| peptide deformylase [Escherichia fergusonii ATCC 35469]
gi|218362612|emb|CAR00238.1| peptide deformylase [Escherichia coli IAI1]
gi|218367117|emb|CAR04891.1| peptide deformylase [Escherichia coli S88]
gi|218429137|emb|CAR10089.2| peptide deformylase [Escherichia coli ED1a]
gi|218433991|emb|CAR14908.1| peptide deformylase [Escherichia coli UMN026]
gi|222034995|emb|CAP77738.1| Peptide deformylase [Escherichia coli LF82]
gi|226838953|gb|EEH70976.1| peptide deformylase [Escherichia sp. 1_1_43]
gi|226902280|gb|EEH88539.1| peptide deformylase [Escherichia sp. 3_2_53FAA]
gi|227839562|gb|EEJ50028.1| peptide deformylase [Escherichia coli 83972]
gi|238861987|gb|ACR63985.1| peptide deformylase [Escherichia coli BW2952]
gi|242378813|emb|CAQ33605.1| peptide deformylase [Escherichia coli BL21(DE3)]
gi|253322934|gb|ACT27536.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975115|gb|ACT40786.1| peptide deformylase [Escherichia coli B str. REL606]
gi|253979271|gb|ACT44941.1| peptide deformylase [Escherichia coli BL21(DE3)]
gi|254594623|gb|ACT73984.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359]
gi|257761231|dbj|BAI32728.1| peptide deformylase [Escherichia coli O103:H2 str. 12009]
gi|260447695|gb|ACX38117.1| peptide deformylase [Escherichia coli DH1]
gi|281180321|dbj|BAI56651.1| polypeptide deformylase [Escherichia coli SE15]
gi|284923293|emb|CBG36387.1| polypeptide deformylase [Escherichia coli 042]
gi|291321731|gb|EFE61162.1| peptide deformylase [Escherichia coli B088]
gi|291425695|gb|EFE98729.1| peptide deformylase [Escherichia coli FVEC1412]
gi|291431281|gb|EFF04266.1| peptide deformylase [Escherichia coli B185]
gi|291468352|gb|EFF10845.1| peptide deformylase [Escherichia coli B354]
gi|294491738|gb|ADE90494.1| peptide deformylase [Escherichia coli IHE3034]
gi|298276461|gb|EFI17979.1| def [Escherichia coli FVEC1302]
gi|299881612|gb|EFI89823.1| peptide deformylase [Escherichia coli MS 196-1]
gi|300301942|gb|EFJ58327.1| peptide deformylase [Escherichia coli MS 185-1]
gi|300308976|gb|EFJ63496.1| peptide deformylase [Escherichia coli MS 200-1]
gi|300359511|gb|EFJ75381.1| peptide deformylase [Escherichia coli MS 198-1]
gi|300399513|gb|EFJ83051.1| peptide deformylase [Escherichia coli MS 69-1]
gi|300404408|gb|EFJ87946.1| peptide deformylase [Escherichia coli MS 84-1]
gi|300409429|gb|EFJ92967.1| peptide deformylase [Escherichia coli MS 45-1]
gi|300414522|gb|EFJ97832.1| peptide deformylase [Escherichia coli MS 115-1]
gi|300421706|gb|EFK05017.1| peptide deformylase [Escherichia coli MS 182-1]
gi|300460063|gb|EFK23556.1| peptide deformylase [Escherichia coli MS 187-1]
gi|300532395|gb|EFK53457.1| peptide deformylase [Escherichia coli MS 107-1]
gi|300839191|gb|EFK66951.1| peptide deformylase [Escherichia coli MS 124-1]
gi|300847980|gb|EFK75740.1| peptide deformylase [Escherichia coli MS 78-1]
gi|301077737|gb|EFK92543.1| peptide deformylase [Escherichia coli MS 146-1]
gi|305850767|gb|EFM51224.1| peptide deformylase [Escherichia coli NC101]
gi|306905484|gb|EFN36019.1| peptide deformylase [Escherichia coli W]
gi|307555374|gb|ADN48149.1| peptide deformylase [Escherichia coli ABU 83972]
gi|307628321|gb|ADN72625.1| peptide deformylase [Escherichia coli UM146]
gi|308121612|gb|EFO58874.1| peptide deformylase [Escherichia coli MS 145-7]
gi|309703698|emb|CBJ03039.1| polypeptide deformylase [Escherichia coli ETEC H10407]
gi|310334829|gb|EFQ01034.1| peptide deformylase [Escherichia coli 1827-70]
gi|312287213|gb|EFR15123.1| peptide deformylase [Escherichia coli 2362-75]
gi|312947837|gb|ADR28664.1| peptide deformylase [Escherichia coli O83:H1 str. NRG 857C]
gi|315062578|gb|ADT76905.1| peptide deformylase [Escherichia coli W]
gi|315137862|dbj|BAJ45021.1| peptide deformylase [Escherichia coli DH1]
gi|315255870|gb|EFU35838.1| peptide deformylase [Escherichia coli MS 85-1]
gi|315284579|gb|EFU44024.1| peptide deformylase [Escherichia coli MS 110-3]
gi|315292338|gb|EFU51690.1| peptide deformylase [Escherichia coli MS 153-1]
gi|315297152|gb|EFU56432.1| peptide deformylase [Escherichia coli MS 16-3]
gi|315617089|gb|EFU97699.1| peptide deformylase [Escherichia coli 3431]
gi|320173931|gb|EFW49107.1| Peptide deformylase [Shigella dysenteriae CDC 74-1112]
gi|320182716|gb|EFW57602.1| Peptide deformylase [Shigella boydii ATCC 9905]
gi|320187008|gb|EFW61720.1| Peptide deformylase [Shigella flexneri CDC 796-83]
gi|320191679|gb|EFW66329.1| Peptide deformylase [Escherichia coli O157:H7 str. EC1212]
gi|320195378|gb|EFW70005.1| Peptide deformylase [Escherichia coli WV_060327]
gi|320199474|gb|EFW74064.1| Peptide deformylase [Escherichia coli EC4100B]
gi|320639591|gb|EFX09185.1| peptide deformylase [Escherichia coli O157:H7 str. G5101]
gi|320645089|gb|EFX14105.1| peptide deformylase [Escherichia coli O157:H- str. 493-89]
gi|320650400|gb|EFX18866.1| peptide deformylase [Escherichia coli O157:H- str. H 2687]
gi|320655925|gb|EFX23845.1| peptide deformylase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320666399|gb|EFX33382.1| peptide deformylase [Escherichia coli O157:H7 str. LSU-61]
gi|323162965|gb|EFZ48800.1| peptide deformylase [Escherichia coli E128010]
gi|323182765|gb|EFZ68166.1| peptide deformylase [Escherichia coli OK1357]
gi|323189108|gb|EFZ74392.1| peptide deformylase [Escherichia coli RN587/1]
gi|323376835|gb|ADX49103.1| peptide deformylase [Escherichia coli KO11FL]
gi|323934515|gb|EGB30923.1| peptide deformylase [Escherichia coli E1520]
gi|323939292|gb|EGB35504.1| peptide deformylase [Escherichia coli E482]
gi|323944293|gb|EGB40369.1| peptide deformylase [Escherichia coli H120]
gi|323950200|gb|EGB46082.1| peptide deformylase [Escherichia coli H252]
gi|323954591|gb|EGB50374.1| peptide deformylase [Escherichia coli H263]
gi|323966248|gb|EGB61683.1| peptide deformylase [Escherichia coli M863]
gi|323970090|gb|EGB65364.1| peptide deformylase [Escherichia coli TA007]
gi|323974761|gb|EGB69874.1| peptide deformylase [Escherichia coli TW10509]
gi|324009052|gb|EGB78271.1| peptide deformylase [Escherichia coli MS 57-2]
gi|324014963|gb|EGB84182.1| peptide deformylase [Escherichia coli MS 60-1]
gi|324111965|gb|EGC05944.1| peptide deformylase [Escherichia fergusonii B253]
gi|324116324|gb|EGC10244.1| peptide deformylase [Escherichia coli E1167]
gi|326342535|gb|EGD66309.1| Peptide deformylase [Escherichia coli O157:H7 str. 1044]
gi|326344522|gb|EGD68271.1| Peptide deformylase [Escherichia coli O157:H7 str. 1125]
gi|327250935|gb|EGE62628.1| peptide deformylase [Escherichia coli STEC_7v]
gi|330909331|gb|EGH37845.1| peptide deformylase [Escherichia coli AA86]
gi|331036276|gb|EGI08502.1| peptide deformylase [Escherichia coli H736]
gi|331041581|gb|EGI13725.1| peptide deformylase [Escherichia coli M605]
gi|331046894|gb|EGI18972.1| peptide deformylase [Escherichia coli M718]
gi|331052792|gb|EGI24825.1| peptide deformylase [Escherichia coli TA206]
gi|331057409|gb|EGI29395.1| peptide deformylase [Escherichia coli TA143]
gi|331062178|gb|EGI34098.1| peptide deformylase [Escherichia coli TA271]
gi|331072527|gb|EGI43852.1| peptide deformylase [Escherichia coli H591]
gi|332085435|gb|EGI90601.1| peptide deformylase [Shigella boydii 5216-82]
gi|332086260|gb|EGI91416.1| peptide deformylase [Shigella dysenteriae 155-74]
gi|332090315|gb|EGI95413.1| peptide deformylase [Shigella boydii 3594-74]
gi|332104193|gb|EGJ07539.1| peptide deformylase [Shigella sp. D9]
gi|332345234|gb|AEE58568.1| peptide deformylase [Escherichia coli UMNK88]
gi|333971395|gb|AEG38200.1| Peptide deformylase [Escherichia coli NA114]
gi|338768585|gb|EGP23376.1| Peptide deformylase 1 [Escherichia coli PCN033]
gi|339417008|gb|AEJ58680.1| peptide deformylase [Escherichia coli UMNF18]
gi|340732817|gb|EGR61953.1| peptide deformylase [Escherichia coli O104:H4 str. 01-09591]
gi|340738384|gb|EGR72633.1| peptide deformylase [Escherichia coli O104:H4 str. LB226692]
gi|341919687|gb|EGT69297.1| hypothetical protein C22711_3327 [Escherichia coli O104:H4 str.
C227-11]
gi|342361516|gb|EGU25652.1| peptide deformylase [Escherichia coli XH140A]
gi|342927011|gb|EGU95733.1| peptide deformylase [Escherichia coli MS 79-10]
gi|344191997|gb|EGV46099.1| peptide deformylase [Escherichia coli XH001]
gi|345332462|gb|EGW64918.1| peptide deformylase [Escherichia coli STEC_C165-02]
gi|345334674|gb|EGW67115.1| peptide deformylase [Escherichia coli STEC_B2F1]
gi|345347528|gb|EGW79832.1| peptide deformylase [Escherichia coli STEC_94C]
gi|345349552|gb|EGW81833.1| peptide deformylase [Escherichia coli 3030-1]
gi|345367522|gb|EGW99563.1| peptide deformylase [Escherichia coli STEC_DG131-3]
gi|345373430|gb|EGX05389.1| peptide deformylase [Escherichia coli STEC_H.1.8]
gi|345378760|gb|EGX10680.1| peptide deformylase [Escherichia coli STEC_MHI813]
gi|345385264|gb|EGX15109.1| peptide deformylase [Escherichia coli STEC_S1191]
gi|345391488|gb|EGX21277.1| peptide deformylase [Escherichia coli TX1999]
gi|354858612|gb|EHF19061.1| peptide deformylase [Escherichia coli O104:H4 str. C236-11]
gi|354863066|gb|EHF23500.1| peptide deformylase [Escherichia coli O104:H4 str. C227-11]
gi|354863956|gb|EHF24386.1| peptide deformylase [Escherichia coli O104:H4 str. 04-8351]
gi|354871101|gb|EHF31499.1| peptide deformylase [Escherichia coli O104:H4 str. 09-7901]
gi|354877639|gb|EHF37997.1| peptide deformylase [Escherichia coli O104:H4 str. 11-3677]
gi|354886540|gb|EHF46822.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4404]
gi|354890432|gb|EHF50671.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4522]
gi|354894753|gb|EHF54943.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4623]
gi|354906558|gb|EHF66632.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354909201|gb|EHF69234.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354911186|gb|EHF71191.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354913959|gb|EHF73944.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354921637|gb|EHF81558.1| peptide deformylase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|355349951|gb|EHF99152.1| Chloro Complex [Escherichia coli cloneA_i1]
gi|355422065|gb|AER86262.1| peptide deformylase [Escherichia coli str. 'clone D i2']
gi|355426985|gb|AER91181.1| peptide deformylase [Escherichia coli str. 'clone D i14']
gi|359333469|dbj|BAL39916.1| peptide deformylase [Escherichia coli str. K-12 substr. MDS42]
gi|371593611|gb|EHN82489.1| peptide deformylase [Escherichia coli H494]
gi|371596151|gb|EHN84991.1| peptide deformylase [Escherichia coli TA124]
gi|371604547|gb|EHN93174.1| peptide deformylase [Escherichia coli H397]
gi|371606968|gb|EHN95553.1| peptide deformylase [Escherichia coli E101]
gi|373245345|gb|EHP64816.1| peptide deformylase [Escherichia coli 4_1_47FAA]
gi|375322423|gb|EHS68180.1| peptide deformylase [Escherichia coli O157:H43 str. T22]
gi|377840456|gb|EHU05528.1| peptide deformylase [Escherichia coli DEC1C]
gi|377843011|gb|EHU08052.1| peptide deformylase [Escherichia coli DEC1B]
gi|377854260|gb|EHU19147.1| peptide deformylase [Escherichia coli DEC1D]
gi|377857310|gb|EHU22162.1| peptide deformylase [Escherichia coli DEC1E]
gi|377860485|gb|EHU25310.1| peptide deformylase [Escherichia coli DEC2A]
gi|377871281|gb|EHU35945.1| peptide deformylase [Escherichia coli DEC2B]
gi|377874179|gb|EHU38809.1| peptide deformylase [Escherichia coli DEC2C]
gi|377876287|gb|EHU40894.1| peptide deformylase [Escherichia coli DEC2D]
gi|377886781|gb|EHU51260.1| peptide deformylase [Escherichia coli DEC2E]
gi|377890140|gb|EHU54598.1| peptide deformylase [Escherichia coli DEC3A]
gi|377891900|gb|EHU56352.1| peptide deformylase [Escherichia coli DEC3B]
gi|377900283|gb|EHU64617.1| peptide deformylase [Escherichia coli DEC3C]
gi|377905439|gb|EHU69708.1| peptide deformylase [Escherichia coli DEC3E]
gi|377907050|gb|EHU71286.1| peptide deformylase [Escherichia coli DEC3D]
gi|377920579|gb|EHU84596.1| peptide deformylase [Escherichia coli DEC4A]
gi|377927420|gb|EHU91335.1| peptide deformylase [Escherichia coli DEC4B]
gi|377934577|gb|EHU98405.1| peptide deformylase [Escherichia coli DEC3F]
gi|377937053|gb|EHV00841.1| peptide deformylase [Escherichia coli DEC4C]
gi|377938817|gb|EHV02580.1| peptide deformylase [Escherichia coli DEC4D]
gi|377945404|gb|EHV09099.1| peptide deformylase [Escherichia coli DEC4E]
gi|377953418|gb|EHV16996.1| peptide deformylase [Escherichia coli DEC4F]
gi|377962606|gb|EHV26058.1| peptide deformylase [Escherichia coli DEC5B]
gi|377989619|gb|EHV52785.1| peptide deformylase [Escherichia coli DEC6B]
gi|377990608|gb|EHV53766.1| peptide deformylase [Escherichia coli DEC6A]
gi|377993430|gb|EHV56562.1| peptide deformylase [Escherichia coli DEC6C]
gi|378007637|gb|EHV70605.1| peptide deformylase [Escherichia coli DEC6E]
gi|378012856|gb|EHV75783.1| peptide deformylase [Escherichia coli DEC7A]
gi|378016301|gb|EHV79187.1| peptide deformylase [Escherichia coli DEC6D]
gi|378021452|gb|EHV84154.1| peptide deformylase [Escherichia coli DEC7C]
gi|378025239|gb|EHV87883.1| peptide deformylase [Escherichia coli DEC7D]
gi|378030379|gb|EHV92980.1| peptide deformylase [Escherichia coli DEC7B]
gi|378035806|gb|EHV98358.1| peptide deformylase [Escherichia coli DEC7E]
gi|378124836|gb|EHW86239.1| peptide deformylase [Escherichia coli DEC10E]
gi|378126202|gb|EHW87598.1| peptide deformylase [Escherichia coli DEC11A]
gi|378138986|gb|EHX00235.1| peptide deformylase [Escherichia coli DEC11B]
gi|378145542|gb|EHX06704.1| peptide deformylase [Escherichia coli DEC11D]
gi|378146852|gb|EHX08001.1| peptide deformylase [Escherichia coli DEC11C]
gi|378155240|gb|EHX16299.1| peptide deformylase [Escherichia coli DEC11E]
gi|378162338|gb|EHX23302.1| peptide deformylase [Escherichia coli DEC12B]
gi|378166151|gb|EHX27077.1| peptide deformylase [Escherichia coli DEC12A]
gi|378166873|gb|EHX27791.1| peptide deformylase [Escherichia coli DEC12C]
gi|378179649|gb|EHX40357.1| peptide deformylase [Escherichia coli DEC12D]
gi|378183746|gb|EHX44387.1| peptide deformylase [Escherichia coli DEC13A]
gi|378183916|gb|EHX44555.1| peptide deformylase [Escherichia coli DEC12E]
gi|378195248|gb|EHX55748.1| peptide deformylase [Escherichia coli DEC13D]
gi|378196455|gb|EHX56941.1| peptide deformylase [Escherichia coli DEC13C]
gi|378213494|gb|EHX73806.1| peptide deformylase [Escherichia coli DEC14A]
gi|378228548|gb|EHX88699.1| peptide deformylase [Escherichia coli DEC14D]
gi|378235100|gb|EHX95172.1| peptide deformylase [Escherichia coli DEC15A]
gi|378240436|gb|EHY00406.1| peptide deformylase [Escherichia coli DEC15B]
gi|378244907|gb|EHY04848.1| peptide deformylase [Escherichia coli DEC15C]
gi|378252770|gb|EHY12656.1| peptide deformylase [Escherichia coli DEC15D]
gi|378257300|gb|EHY17140.1| peptide deformylase [Escherichia coli DEC15E]
gi|380346684|gb|EIA34976.1| peptide deformylase [Escherichia coli SCI-07]
gi|383104697|gb|AFG42206.1| Peptide deformylase [Escherichia coli P12b]
gi|383391287|gb|AFH16245.1| peptide deformylase [Escherichia coli KO11FL]
gi|383406871|gb|AFH13114.1| peptide deformylase [Escherichia coli W]
gi|383476275|gb|EID68221.1| peptide deformylase [Escherichia coli W26]
gi|385153725|gb|EIF15753.1| peptide deformylase [Escherichia coli O32:H37 str. P4]
gi|385537852|gb|EIF84719.1| peptide deformylase [Escherichia coli M919]
gi|385709522|gb|EIG46519.1| peptide deformylase [Escherichia coli H730]
gi|385709724|gb|EIG46720.1| peptide deformylase [Escherichia coli B799]
gi|386120047|gb|EIG68684.1| peptide deformylase [Escherichia sp. 4_1_40B]
gi|386139789|gb|EIG80944.1| peptide deformylase [Escherichia coli 1.2741]
gi|386153681|gb|EIH04970.1| peptide deformylase [Escherichia coli 5.0588]
gi|386155778|gb|EIH12128.1| peptide deformylase [Escherichia coli 97.0259]
gi|386162570|gb|EIH24366.1| peptide deformylase [Escherichia coli 1.2264]
gi|386166092|gb|EIH32612.1| peptide deformylase [Escherichia coli 96.0497]
gi|386173191|gb|EIH45203.1| peptide deformylase [Escherichia coli 99.0741]
gi|386178590|gb|EIH56069.1| peptide deformylase [Escherichia coli 3.2608]
gi|386183646|gb|EIH66393.1| peptide deformylase [Escherichia coli 93.0624]
gi|386201918|gb|EII00909.1| peptide deformylase [Escherichia coli 96.154]
gi|386207673|gb|EII12178.1| peptide deformylase [Escherichia coli 5.0959]
gi|386212667|gb|EII23111.1| peptide deformylase [Escherichia coli 9.0111]
gi|386219834|gb|EII36298.1| peptide deformylase [Escherichia coli 4.0967]
gi|386221882|gb|EII44311.1| peptide deformylase [Escherichia coli 2.3916]
gi|386230417|gb|EII57772.1| peptide deformylase [Escherichia coli 3.3884]
gi|386236295|gb|EII68271.1| peptide deformylase [Escherichia coli 2.4168]
gi|386241192|gb|EII78110.1| peptide deformylase [Escherichia coli 3.2303]
gi|386244868|gb|EII86598.1| peptide deformylase [Escherichia coli 3003]
gi|386797914|gb|AFJ30948.1| peptide deformylase [Escherichia coli Xuzhou21]
gi|388335313|gb|EIL01882.1| peptide deformylase [Escherichia coli O103:H2 str. CVM9450]
gi|388341138|gb|EIL07281.1| peptide deformylase [Escherichia coli O103:H25 str. CVM9340]
gi|388389539|gb|EIL51066.1| peptide deformylase [Escherichia coli KD2]
gi|388391666|gb|EIL53118.1| peptide deformylase [Escherichia coli KD1]
gi|388397897|gb|EIL58854.1| peptide deformylase [Escherichia coli 541-15]
gi|388408972|gb|EIL69299.1| peptide deformylase [Escherichia coli 541-1]
gi|388410162|gb|EIL70413.1| peptide deformylase [Escherichia coli 576-1]
gi|388419336|gb|EIL79078.1| peptide deformylase [Escherichia coli CUMT8]
gi|388419539|gb|EIL79268.1| peptide deformylase [Escherichia coli HM605]
gi|390638832|gb|EIN18326.1| peptide deformylase [Escherichia coli FRIK1996]
gi|390640466|gb|EIN19924.1| peptide deformylase [Escherichia coli FDA517]
gi|390675241|gb|EIN51398.1| peptide deformylase [Escherichia coli PA3]
gi|390698834|gb|EIN73207.1| peptide deformylase [Escherichia coli PA15]
gi|390712193|gb|EIN85150.1| peptide deformylase [Escherichia coli PA22]
gi|390719349|gb|EIN92075.1| peptide deformylase [Escherichia coli PA25]
gi|390721273|gb|EIN93973.1| peptide deformylase [Escherichia coli PA24]
gi|390739563|gb|EIO10731.1| peptide deformylase [Escherichia coli PA32]
gi|390756197|gb|EIO25708.1| peptide deformylase [Escherichia coli PA40]
gi|390763589|gb|EIO32830.1| peptide deformylase [Escherichia coli PA39]
gi|390766367|gb|EIO35491.1| peptide deformylase [Escherichia coli PA42]
gi|390779324|gb|EIO47038.1| peptide deformylase [Escherichia coli TW06591]
gi|390787369|gb|EIO54859.1| peptide deformylase [Escherichia coli TW07945]
gi|390787716|gb|EIO55189.1| peptide deformylase [Escherichia coli TW10246]
gi|390794062|gb|EIO61363.1| peptide deformylase [Escherichia coli TW11039]
gi|390802353|gb|EIO69393.1| peptide deformylase [Escherichia coli TW09098]
gi|390804656|gb|EIO71604.1| peptide deformylase [Escherichia coli TW09109]
gi|390814250|gb|EIO80830.1| peptide deformylase [Escherichia coli TW10119]
gi|390823766|gb|EIO89797.1| peptide deformylase [Escherichia coli EC4203]
gi|390828630|gb|EIO94281.1| peptide deformylase [Escherichia coli EC4196]
gi|390843996|gb|EIP07763.1| peptide deformylase [Escherichia coli TW14301]
gi|390848652|gb|EIP12112.1| peptide deformylase [Escherichia coli EC4421]
gi|390859095|gb|EIP21455.1| peptide deformylase [Escherichia coli EC4422]
gi|390863493|gb|EIP25627.1| peptide deformylase [Escherichia coli EC4013]
gi|390868087|gb|EIP29850.1| peptide deformylase [Escherichia coli EC4402]
gi|390876232|gb|EIP37220.1| peptide deformylase [Escherichia coli EC4439]
gi|390881601|gb|EIP42176.1| peptide deformylase [Escherichia coli EC4436]
gi|390891449|gb|EIP51079.1| peptide deformylase [Escherichia coli EC4437]
gi|390898492|gb|EIP57765.1| peptide deformylase [Escherichia coli EC1738]
gi|390906464|gb|EIP65355.1| peptide deformylase [Escherichia coli EC1734]
gi|390916799|gb|EIP75240.1| peptide deformylase [Escherichia coli EC1863]
gi|390917542|gb|EIP75960.1| peptide deformylase [Escherichia coli EC1845]
gi|391248230|gb|EIQ07474.1| peptide deformylase [Shigella flexneri CCH060]
gi|391266853|gb|EIQ25799.1| peptide deformylase [Shigella boydii 965-58]
gi|391274470|gb|EIQ33278.1| peptide deformylase [Shigella boydii 4444-74]
gi|391298475|gb|EIQ56475.1| peptide deformylase [Shigella dysenteriae 225-75]
gi|391302881|gb|EIQ60727.1| peptide deformylase [Escherichia coli EPECa12]
gi|391310236|gb|EIQ67891.1| peptide deformylase [Escherichia coli EPEC C342-62]
gi|397783631|gb|EJK94489.1| peptide deformylase [Escherichia coli STEC_O31]
gi|404334909|gb|EJZ61385.1| peptide deformylase [Shigella flexneri 1485-80]
gi|406775818|gb|AFS55242.1| peptide deformylase [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407052392|gb|AFS72443.1| peptide deformylase [Escherichia coli O104:H4 str. 2011C-3493]
gi|407067284|gb|AFS88331.1| peptide deformylase [Escherichia coli O104:H4 str. 2009EL-2071]
gi|408062129|gb|EKG96635.1| peptide deformylase [Escherichia coli PA7]
gi|408064507|gb|EKG98988.1| peptide deformylase [Escherichia coli FRIK920]
gi|408077491|gb|EKH11695.1| peptide deformylase [Escherichia coli FDA506]
gi|408080966|gb|EKH15005.1| peptide deformylase [Escherichia coli FDA507]
gi|408089450|gb|EKH22760.1| peptide deformylase [Escherichia coli FDA504]
gi|408095533|gb|EKH28502.1| peptide deformylase [Escherichia coli FRIK1999]
gi|408106540|gb|EKH38638.1| peptide deformylase [Escherichia coli NE1487]
gi|408113341|gb|EKH44941.1| peptide deformylase [Escherichia coli NE037]
gi|408119503|gb|EKH50569.1| peptide deformylase [Escherichia coli FRIK2001]
gi|408125676|gb|EKH56272.1| peptide deformylase [Escherichia coli PA4]
gi|408135543|gb|EKH65319.1| peptide deformylase [Escherichia coli PA23]
gi|408138310|gb|EKH67985.1| peptide deformylase [Escherichia coli PA49]
gi|408144731|gb|EKH73951.1| peptide deformylase [Escherichia coli PA45]
gi|408153034|gb|EKH81444.1| peptide deformylase [Escherichia coli TT12B]
gi|408158133|gb|EKH86261.1| peptide deformylase [Escherichia coli MA6]
gi|408171397|gb|EKH98516.1| peptide deformylase [Escherichia coli CB7326]
gi|408178100|gb|EKI04833.1| peptide deformylase [Escherichia coli EC96038]
gi|408181312|gb|EKI07873.1| peptide deformylase [Escherichia coli 5412]
gi|408190910|gb|EKI16537.1| peptide deformylase [Escherichia coli TW15901]
gi|408210420|gb|EKI34984.1| peptide deformylase [Escherichia coli 3006]
gi|408214730|gb|EKI39141.1| peptide deformylase [Escherichia coli PA38]
gi|408226279|gb|EKI49928.1| peptide deformylase [Escherichia coli N1]
gi|408253259|gb|EKI74863.1| peptide deformylase [Escherichia coli EC1847]
gi|408272293|gb|EKI92392.1| peptide deformylase [Escherichia coli EC1850]
gi|408275193|gb|EKI95167.1| peptide deformylase [Escherichia coli EC1856]
gi|408283570|gb|EKJ02727.1| peptide deformylase [Escherichia coli EC1862]
gi|408305266|gb|EKJ22665.1| peptide deformylase [Escherichia coli EC1868]
gi|408305966|gb|EKJ23346.1| peptide deformylase [Escherichia coli EC1866]
gi|408322434|gb|EKJ38420.1| peptide deformylase [Escherichia coli EC1870]
gi|408324731|gb|EKJ40656.1| peptide deformylase [Escherichia coli NE098]
gi|408341600|gb|EKJ56044.1| peptide deformylase [Escherichia coli 0.1288]
gi|408456940|gb|EKJ80745.1| peptide deformylase [Escherichia coli AD30]
gi|408546911|gb|EKK24312.1| peptide deformylase [Escherichia coli 3.4870]
gi|408547902|gb|EKK25288.1| peptide deformylase [Escherichia coli 6.0172]
gi|408565191|gb|EKK41279.1| peptide deformylase [Escherichia coli 8.0586]
gi|408566360|gb|EKK42432.1| peptide deformylase [Escherichia coli 8.0569]
gi|408576815|gb|EKK52400.1| peptide deformylase [Escherichia coli 10.0833]
gi|408579448|gb|EKK54908.1| peptide deformylase [Escherichia coli 8.2524]
gi|408608300|gb|EKK81699.1| peptide deformylase [Escherichia coli 10.0821]
gi|412964661|emb|CCK48590.1| peptide deformylase [Escherichia coli chi7122]
gi|412971248|emb|CCJ45903.1| peptide deformylase [Escherichia coli]
gi|427202337|gb|EKV72669.1| peptide deformylase [Escherichia coli 88.1042]
gi|427203574|gb|EKV73877.1| peptide deformylase [Escherichia coli 89.0511]
gi|427218768|gb|EKV87755.1| peptide deformylase [Escherichia coli 90.0091]
gi|427225587|gb|EKV94218.1| peptide deformylase [Escherichia coli 90.0039]
gi|427239378|gb|EKW06862.1| peptide deformylase [Escherichia coli 93.0056]
gi|427239787|gb|EKW07261.1| peptide deformylase [Escherichia coli 93.0055]
gi|427259191|gb|EKW25255.1| peptide deformylase [Escherichia coli 95.0943]
gi|427274436|gb|EKW39088.1| peptide deformylase [Escherichia coli 96.0428]
gi|427281436|gb|EKW45753.1| peptide deformylase [Escherichia coli 96.0939]
gi|427289862|gb|EKW53368.1| peptide deformylase [Escherichia coli 96.0932]
gi|427297082|gb|EKW60123.1| peptide deformylase [Escherichia coli 97.0003]
gi|427312718|gb|EKW74868.1| peptide deformylase [Escherichia coli 97.0007]
gi|427324538|gb|EKW86010.1| peptide deformylase [Escherichia coli 99.0678]
gi|429253126|gb|EKY37620.1| peptide deformylase [Escherichia coli 97.0010]
gi|429346684|gb|EKY83463.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02092]
gi|429356663|gb|EKY93338.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429357538|gb|EKY94211.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02030]
gi|429372830|gb|EKZ09379.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02093]
gi|429374771|gb|EKZ11310.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02281]
gi|429377401|gb|EKZ13922.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02318]
gi|429388633|gb|EKZ25058.1| peptide deformylase [Escherichia coli O104:H4 str. 11-02913]
gi|429391402|gb|EKZ27806.1| peptide deformylase [Escherichia coli O104:H4 str. 11-03439]
gi|429392411|gb|EKZ28812.1| peptide deformylase [Escherichia coli O104:H4 str. 11-03943]
gi|429401932|gb|EKZ38225.1| peptide deformylase [Escherichia coli O104:H4 str. 11-04080]
gi|429402985|gb|EKZ39270.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429406612|gb|EKZ42867.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429414653|gb|EKZ50827.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429418123|gb|EKZ54269.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429424415|gb|EKZ60516.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429428218|gb|EKZ64294.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429433275|gb|EKZ69308.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429440235|gb|EKZ76213.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429445133|gb|EKZ81075.1| peptide deformylase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429449074|gb|EKZ84976.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429454725|gb|EKZ90583.1| peptide deformylase [Escherichia coli O104:H4 str. Ec12-0466]
gi|429458832|gb|EKZ94652.1| peptide deformylase [Escherichia coli O104:H4 str. Ec11-9941]
gi|430872751|gb|ELB96331.1| peptide deformylase [Escherichia coli KTE2]
gi|430874043|gb|ELB97608.1| peptide deformylase [Escherichia coli KTE4]
gi|430883383|gb|ELC06377.1| peptide deformylase [Escherichia coli KTE5]
gi|430891536|gb|ELC14062.1| peptide deformylase [Escherichia coli KTE10]
gi|430893278|gb|ELC15602.1| peptide deformylase [Escherichia coli KTE11]
gi|430896095|gb|ELC18339.1| peptide deformylase [Escherichia coli KTE12]
gi|430903571|gb|ELC25307.1| peptide deformylase [Escherichia coli KTE15]
gi|430904510|gb|ELC26219.1| peptide deformylase [Escherichia coli KTE16]
gi|430913106|gb|ELC34236.1| peptide deformylase [Escherichia coli KTE25]
gi|430915090|gb|ELC36174.1| peptide deformylase [Escherichia coli KTE21]
gi|430923068|gb|ELC43805.1| peptide deformylase [Escherichia coli KTE26]
gi|430927229|gb|ELC47793.1| peptide deformylase [Escherichia coli KTE28]
gi|430933337|gb|ELC53743.1| peptide deformylase [Escherichia coli KTE39]
gi|430936586|gb|ELC56854.1| peptide deformylase [Escherichia coli KTE44]
gi|430942036|gb|ELC62174.1| peptide deformylase [Escherichia coli KTE178]
gi|430950674|gb|ELC69902.1| peptide deformylase [Escherichia coli KTE187]
gi|430951754|gb|ELC70962.1| peptide deformylase [Escherichia coli KTE181]
gi|430960649|gb|ELC78700.1| peptide deformylase [Escherichia coli KTE188]
gi|430963814|gb|ELC81393.1| peptide deformylase [Escherichia coli KTE189]
gi|430970971|gb|ELC87993.1| peptide deformylase [Escherichia coli KTE191]
gi|430977947|gb|ELC94770.1| peptide deformylase [Escherichia coli KTE193]
gi|430979865|gb|ELC96629.1| peptide deformylase [Escherichia coli KTE201]
gi|430985883|gb|ELD02466.1| peptide deformylase [Escherichia coli KTE204]
gi|430991218|gb|ELD07622.1| peptide deformylase [Escherichia coli KTE205]
gi|430995624|gb|ELD11914.1| peptide deformylase [Escherichia coli KTE206]
gi|431002219|gb|ELD17732.1| peptide deformylase [Escherichia coli KTE208]
gi|431004223|gb|ELD19449.1| peptide deformylase [Escherichia coli KTE210]
gi|431018208|gb|ELD31644.1| peptide deformylase [Escherichia coli KTE213]
gi|431020935|gb|ELD34264.1| peptide deformylase [Escherichia coli KTE214]
gi|431026020|gb|ELD39095.1| peptide deformylase [Escherichia coli KTE216]
gi|431035506|gb|ELD46889.1| peptide deformylase [Escherichia coli KTE220]
gi|431038372|gb|ELD49268.1| peptide deformylase [Escherichia coli KTE224]
gi|431047726|gb|ELD57711.1| peptide deformylase [Escherichia coli KTE228]
gi|431048724|gb|ELD58692.1| peptide deformylase [Escherichia coli KTE230]
gi|431057892|gb|ELD67302.1| peptide deformylase [Escherichia coli KTE234]
gi|431060763|gb|ELD70085.1| peptide deformylase [Escherichia coli KTE233]
gi|431081014|gb|ELD87793.1| peptide deformylase [Escherichia coli KTE47]
gi|431088615|gb|ELD94485.1| peptide deformylase [Escherichia coli KTE49]
gi|431090248|gb|ELD96017.1| peptide deformylase [Escherichia coli KTE51]
gi|431097587|gb|ELE02914.1| peptide deformylase [Escherichia coli KTE53]
gi|431104800|gb|ELE09164.1| peptide deformylase [Escherichia coli KTE55]
gi|431112607|gb|ELE16289.1| peptide deformylase [Escherichia coli KTE56]
gi|431114711|gb|ELE18238.1| peptide deformylase [Escherichia coli KTE57]
gi|431117793|gb|ELE21017.1| peptide deformylase [Escherichia coli KTE58]
gi|431125937|gb|ELE28291.1| peptide deformylase [Escherichia coli KTE60]
gi|431128349|gb|ELE30533.1| peptide deformylase [Escherichia coli KTE62]
gi|431135631|gb|ELE37506.1| peptide deformylase [Escherichia coli KTE67]
gi|431137491|gb|ELE39336.1| peptide deformylase [Escherichia coli KTE66]
gi|431146314|gb|ELE47750.1| peptide deformylase [Escherichia coli KTE72]
gi|431160784|gb|ELE61285.1| peptide deformylase [Escherichia coli KTE77]
gi|431167335|gb|ELE67600.1| peptide deformylase [Escherichia coli KTE80]
gi|431168809|gb|ELE69041.1| peptide deformylase [Escherichia coli KTE81]
gi|431177608|gb|ELE77522.1| peptide deformylase [Escherichia coli KTE83]
gi|431177932|gb|ELE77845.1| peptide deformylase [Escherichia coli KTE86]
gi|431187294|gb|ELE86795.1| peptide deformylase [Escherichia coli KTE87]
gi|431187633|gb|ELE87132.1| peptide deformylase [Escherichia coli KTE93]
gi|431197073|gb|ELE95939.1| peptide deformylase [Escherichia coli KTE111]
gi|431211631|gb|ELF09592.1| peptide deformylase [Escherichia coli KTE142]
gi|431219534|gb|ELF16928.1| peptide deformylase [Escherichia coli KTE156]
gi|431231377|gb|ELF27138.1| peptide deformylase [Escherichia coli KTE162]
gi|431235858|gb|ELF31072.1| peptide deformylase [Escherichia coli KTE161]
gi|431239914|gb|ELF34376.1| peptide deformylase [Escherichia coli KTE169]
gi|431240700|gb|ELF35148.1| peptide deformylase [Escherichia coli KTE171]
gi|431253064|gb|ELF46576.1| peptide deformylase [Escherichia coli KTE8]
gi|431255162|gb|ELF48416.1| peptide deformylase [Escherichia coli KTE6]
gi|431260443|gb|ELF52540.1| peptide deformylase [Escherichia coli KTE9]
gi|431261970|gb|ELF53960.1| peptide deformylase [Escherichia coli KTE17]
gi|431271151|gb|ELF62290.1| peptide deformylase [Escherichia coli KTE18]
gi|431271930|gb|ELF63048.1| peptide deformylase [Escherichia coli KTE45]
gi|431281178|gb|ELF72081.1| peptide deformylase [Escherichia coli KTE23]
gi|431289165|gb|ELF79906.1| peptide deformylase [Escherichia coli KTE43]
gi|431293692|gb|ELF83975.1| peptide deformylase [Escherichia coli KTE29]
gi|431299755|gb|ELF89321.1| peptide deformylase [Escherichia coli KTE22]
gi|431306429|gb|ELF94742.1| peptide deformylase [Escherichia coli KTE46]
gi|431307277|gb|ELF95569.1| peptide deformylase [Escherichia coli KTE48]
gi|431322064|gb|ELG09652.1| peptide deformylase [Escherichia coli KTE50]
gi|431324024|gb|ELG11480.1| peptide deformylase [Escherichia coli KTE54]
gi|431324686|gb|ELG12102.1| peptide deformylase [Escherichia coli KTE59]
gi|431326331|gb|ELG13677.1| peptide deformylase [Escherichia coli KTE63]
gi|431335167|gb|ELG22307.1| peptide deformylase [Escherichia coli KTE65]
gi|431336982|gb|ELG24076.1| peptide deformylase [Escherichia coli KTE78]
gi|431346007|gb|ELG32920.1| peptide deformylase [Escherichia coli KTE84]
gi|431349235|gb|ELG36076.1| peptide deformylase [Escherichia coli KTE79]
gi|431352976|gb|ELG39734.1| peptide deformylase [Escherichia coli KTE91]
gi|431360170|gb|ELG46781.1| peptide deformylase [Escherichia coli KTE101]
gi|431365455|gb|ELG51960.1| peptide deformylase [Escherichia coli KTE118]
gi|431378701|gb|ELG63692.1| peptide deformylase [Escherichia coli KTE123]
gi|431382983|gb|ELG67124.1| peptide deformylase [Escherichia coli KTE135]
gi|431386319|gb|ELG70275.1| peptide deformylase [Escherichia coli KTE140]
gi|431392601|gb|ELG76172.1| peptide deformylase [Escherichia coli KTE141]
gi|431397773|gb|ELG81205.1| peptide deformylase [Escherichia coli KTE144]
gi|431402088|gb|ELG85401.1| peptide deformylase [Escherichia coli KTE146]
gi|431408757|gb|ELG91939.1| peptide deformylase [Escherichia coli KTE147]
gi|431413971|gb|ELG96720.1| peptide deformylase [Escherichia coli KTE158]
gi|431418051|gb|ELH00465.1| peptide deformylase [Escherichia coli KTE154]
gi|431423506|gb|ELH05632.1| peptide deformylase [Escherichia coli KTE192]
gi|431427957|gb|ELH09899.1| peptide deformylase [Escherichia coli KTE194]
gi|431431026|gb|ELH12804.1| peptide deformylase [Escherichia coli KTE165]
gi|431435416|gb|ELH17025.1| peptide deformylase [Escherichia coli KTE173]
gi|431435925|gb|ELH17532.1| peptide deformylase [Escherichia coli KTE190]
gi|431440556|gb|ELH21884.1| peptide deformylase [Escherichia coli KTE175]
gi|431454028|gb|ELH34406.1| peptide deformylase [Escherichia coli KTE196]
gi|431459990|gb|ELH40279.1| peptide deformylase [Escherichia coli KTE183]
gi|431460708|gb|ELH40993.1| peptide deformylase [Escherichia coli KTE184]
gi|431464706|gb|ELH44824.1| peptide deformylase [Escherichia coli KTE197]
gi|431470329|gb|ELH50251.1| peptide deformylase [Escherichia coli KTE202]
gi|431477172|gb|ELH56942.1| peptide deformylase [Escherichia coli KTE203]
gi|431478909|gb|ELH58652.1| peptide deformylase [Escherichia coli KTE207]
gi|431486301|gb|ELH65951.1| peptide deformylase [Escherichia coli KTE209]
gi|431489328|gb|ELH68955.1| peptide deformylase [Escherichia coli KTE211]
gi|431491535|gb|ELH71139.1| peptide deformylase [Escherichia coli KTE217]
gi|431494379|gb|ELH73967.1| peptide deformylase [Escherichia coli KTE215]
gi|431502645|gb|ELH81530.1| peptide deformylase [Escherichia coli KTE218]
gi|431504626|gb|ELH83250.1| peptide deformylase [Escherichia coli KTE223]
gi|431510314|gb|ELH88559.1| peptide deformylase [Escherichia coli KTE227]
gi|431521408|gb|ELH98653.1| peptide deformylase [Escherichia coli KTE229]
gi|431527251|gb|ELI03973.1| peptide deformylase [Escherichia coli KTE104]
gi|431528054|gb|ELI04765.1| peptide deformylase [Escherichia coli KTE105]
gi|431532316|gb|ELI08876.1| peptide deformylase [Escherichia coli KTE106]
gi|431540945|gb|ELI16396.1| peptide deformylase [Escherichia coli KTE109]
gi|431547558|gb|ELI21855.1| peptide deformylase [Escherichia coli KTE112]
gi|431549192|gb|ELI23279.1| peptide deformylase [Escherichia coli KTE113]
gi|431553835|gb|ELI27757.1| peptide deformylase [Escherichia coli KTE117]
gi|431562556|gb|ELI35855.1| peptide deformylase [Escherichia coli KTE120]
gi|431566707|gb|ELI39727.1| peptide deformylase [Escherichia coli KTE124]
gi|431567241|gb|ELI40242.1| peptide deformylase [Escherichia coli KTE122]
gi|431578773|gb|ELI51363.1| peptide deformylase [Escherichia coli KTE125]
gi|431580166|gb|ELI52732.1| peptide deformylase [Escherichia coli KTE128]
gi|431584294|gb|ELI56278.1| peptide deformylase [Escherichia coli KTE129]
gi|431594309|gb|ELI64591.1| peptide deformylase [Escherichia coli KTE131]
gi|431598483|gb|ELI68275.1| peptide deformylase [Escherichia coli KTE133]
gi|431602386|gb|ELI71825.1| peptide deformylase [Escherichia coli KTE137]
gi|431608019|gb|ELI77371.1| peptide deformylase [Escherichia coli KTE138]
gi|431613114|gb|ELI82315.1| peptide deformylase [Escherichia coli KTE139]
gi|431616669|gb|ELI85694.1| peptide deformylase [Escherichia coli KTE145]
gi|431624659|gb|ELI93257.1| peptide deformylase [Escherichia coli KTE148]
gi|431625766|gb|ELI94324.1| peptide deformylase [Escherichia coli KTE150]
gi|431631515|gb|ELI99822.1| peptide deformylase [Escherichia coli KTE153]
gi|431639567|gb|ELJ07422.1| peptide deformylase [Escherichia coli KTE157]
gi|431641420|gb|ELJ09159.1| peptide deformylase [Escherichia coli KTE160]
gi|431643911|gb|ELJ11599.1| peptide deformylase [Escherichia coli KTE163]
gi|431654071|gb|ELJ21142.1| peptide deformylase [Escherichia coli KTE166]
gi|431656976|gb|ELJ23948.1| peptide deformylase [Escherichia coli KTE167]
gi|431658766|gb|ELJ25676.1| peptide deformylase [Escherichia coli KTE168]
gi|431667786|gb|ELJ34363.1| peptide deformylase [Escherichia coli KTE174]
gi|431671149|gb|ELJ37435.1| peptide deformylase [Escherichia coli KTE176]
gi|431674717|gb|ELJ40873.1| peptide deformylase [Escherichia coli KTE177]
gi|431684377|gb|ELJ49985.1| peptide deformylase [Escherichia coli KTE179]
gi|431698411|gb|ELJ63455.1| peptide deformylase [Escherichia coli KTE82]
gi|431702992|gb|ELJ67684.1| peptide deformylase [Escherichia coli KTE88]
gi|431703054|gb|ELJ67745.1| peptide deformylase [Escherichia coli KTE85]
gi|431716926|gb|ELJ81030.1| peptide deformylase [Escherichia coli KTE95]
gi|431718321|gb|ELJ82400.1| peptide deformylase [Escherichia coli KTE94]
gi|431728545|gb|ELJ92223.1| peptide deformylase [Escherichia coli KTE97]
gi|431732555|gb|ELJ96007.1| peptide deformylase [Escherichia coli KTE99]
gi|432345919|gb|ELL40411.1| peptide deformylase [Escherichia coli J96]
gi|441607669|emb|CCP96009.1| Peptide deformylase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441651929|emb|CCQ02551.1| Peptide deformylase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|441711334|emb|CCQ08224.1| Peptide deformylase [Escherichia coli Nissle 1917]
gi|443423857|gb|AGC88761.1| peptide deformylase [Escherichia coli APEC O78]
gi|444534741|gb|ELV14937.1| peptide deformylase [Escherichia coli 99.0814]
gi|444537596|gb|ELV17514.1| peptide deformylase [Escherichia coli 09BKT078844]
gi|444544264|gb|ELV23340.1| peptide deformylase [Escherichia coli 99.0815]
gi|444554303|gb|ELV31878.1| peptide deformylase [Escherichia coli 99.0816]
gi|444568580|gb|ELV45249.1| peptide deformylase [Escherichia coli 99.1753]
gi|444589116|gb|ELV64466.1| peptide deformylase [Escherichia coli ATCC 700728]
gi|444590601|gb|ELV65911.1| peptide deformylase [Escherichia coli PA11]
gi|444591593|gb|ELV66876.1| peptide deformylase [Escherichia coli 99.1805]
gi|444611923|gb|ELV86240.1| peptide deformylase [Escherichia coli PA2]
gi|444616802|gb|ELV90951.1| peptide deformylase [Escherichia coli PA13]
gi|444618219|gb|ELV92310.1| peptide deformylase [Escherichia coli PA48]
gi|444619211|gb|ELV93262.1| peptide deformylase [Escherichia coli PA47]
gi|444638660|gb|ELW11991.1| peptide deformylase [Escherichia coli 99.1781]
gi|444639516|gb|ELW12825.1| peptide deformylase [Escherichia coli PA8]
gi|444642086|gb|ELW15296.1| peptide deformylase [Escherichia coli 99.1762]
gi|444657795|gb|ELW30261.1| peptide deformylase [Escherichia coli 3.4880]
gi|444675316|gb|ELW46770.1| peptide deformylase [Escherichia coli 99.0670]
gi|449314429|gb|EMD04595.1| peptide deformylase [Escherichia coli O08]
gi|449315682|gb|EMD05819.1| peptide deformylase [Escherichia coli S17]
Length = 169
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|398792543|ref|ZP_10553137.1| peptide deformylase [Pantoea sp. YR343]
gi|398212921|gb|EJM99522.1| peptide deformylase [Pantoea sp. YR343]
Length = 170
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+KIA P+ + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDDRLRKIAAPVATVNADVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++ ++V A + +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAEWVKVRAQDRDGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLAIC+QHEIDHL+GK+FI+YLS K++RI +K K
Sbjct: 120 ELETDGLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKQKLEK 161
>gi|339484972|ref|YP_004699500.1| peptide deformylase [Pseudomonas putida S16]
gi|421530563|ref|ZP_15977036.1| peptide deformylase [Pseudomonas putida S11]
gi|431800092|ref|YP_007226995.1| peptide deformylase [Pseudomonas putida HB3267]
gi|338835815|gb|AEJ10620.1| peptide deformylase [Pseudomonas putida S16]
gi|402211935|gb|EJT83359.1| peptide deformylase [Pseudomonas putida S11]
gi|430790857|gb|AGA71052.1| peptide deformylase [Pseudomonas putida HB3267]
Length = 168
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 123/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+T FD L+++I +M ETMY A GIGLAA+QV++H+Q+++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVTVFDDALRQLIDDMFETMYEAPGIGLAATQVNVHQQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP + + + Y EGCLS+PG + + R R+RV A + +GK +
Sbjct: 61 MDLSEDRSEPRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ EGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQ 166
>gi|188492250|ref|ZP_02999520.1| peptide deformylase [Escherichia coli 53638]
gi|291284645|ref|YP_003501463.1| peptide deformylase [Escherichia coli O55:H7 str. CB9615]
gi|387508678|ref|YP_006160934.1| peptide deformylase [Escherichia coli O55:H7 str. RM12579]
gi|416822287|ref|ZP_11894723.1| peptide deformylase [Escherichia coli O55:H7 str. USDA 5905]
gi|417285001|ref|ZP_12072292.1| peptide deformylase [Escherichia coli TW07793]
gi|419128135|ref|ZP_13673009.1| peptide deformylase [Escherichia coli DEC5C]
gi|419133390|ref|ZP_13678217.1| peptide deformylase [Escherichia coli DEC5D]
gi|419138548|ref|ZP_13683338.1| peptide deformylase [Escherichia coli DEC5E]
gi|425251130|ref|ZP_18644068.1| peptide deformylase [Escherichia coli 5905]
gi|432487043|ref|ZP_19728951.1| peptide deformylase [Escherichia coli KTE212]
gi|432672370|ref|ZP_19907893.1| peptide deformylase [Escherichia coli KTE119]
gi|433175167|ref|ZP_20359679.1| peptide deformylase [Escherichia coli KTE232]
gi|188487449|gb|EDU62552.1| peptide deformylase [Escherichia coli 53638]
gi|209757364|gb|ACI76994.1| peptide deformylase [Escherichia coli]
gi|290764518|gb|ADD58479.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615]
gi|320661377|gb|EFX28792.1| peptide deformylase [Escherichia coli O55:H7 str. USDA 5905]
gi|374360672|gb|AEZ42379.1| peptide deformylase [Escherichia coli O55:H7 str. RM12579]
gi|377970873|gb|EHV34231.1| peptide deformylase [Escherichia coli DEC5C]
gi|377972113|gb|EHV35463.1| peptide deformylase [Escherichia coli DEC5D]
gi|377980672|gb|EHV43932.1| peptide deformylase [Escherichia coli DEC5E]
gi|386250242|gb|EII96409.1| peptide deformylase [Escherichia coli TW07793]
gi|408162091|gb|EKH90011.1| peptide deformylase [Escherichia coli 5905]
gi|431013756|gb|ELD27478.1| peptide deformylase [Escherichia coli KTE212]
gi|431208156|gb|ELF06378.1| peptide deformylase [Escherichia coli KTE119]
gi|431689602|gb|ELJ55105.1| peptide deformylase [Escherichia coli KTE232]
Length = 169
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|238921409|ref|YP_002934924.1| peptide deformylase, putative [Edwardsiella ictaluri 93-146]
gi|259645180|sp|C5BF17.1|DEF_EDWI9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238870978|gb|ACR70689.1| peptide deformylase, putative [Edwardsiella ictaluri 93-146]
Length = 171
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++++PD RL+ IA+P+ E +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ + E I EGCLS+P + R++ I+V AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLQHDGEAGI-EEGCLSVPEQRALVTRAENIKVRALDRDGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEK 161
>gi|187732040|ref|YP_001881970.1| peptide deformylase [Shigella boydii CDC 3083-94]
gi|238689490|sp|B2U2Q4.1|DEF_SHIB3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|187429032|gb|ACD08306.1| peptide deformylase [Shigella boydii CDC 3083-94]
Length = 169
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPKQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|238783197|ref|ZP_04627223.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970]
gi|238715993|gb|EEQ07979.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970]
Length = 170
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ + LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELETDDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|269140540|ref|YP_003297241.1| peptide deformylase [Edwardsiella tarda EIB202]
gi|387869012|ref|YP_005700481.1| Peptide deformylase [Edwardsiella tarda FL6-60]
gi|267986201|gb|ACY86030.1| peptide deformylase [Edwardsiella tarda EIB202]
gi|304560325|gb|ADM42989.1| Peptide deformylase [Edwardsiella tarda FL6-60]
Length = 171
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++++PD RL+ IA+P+ E +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ + E I EGCLS+P + R++ I+V AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLQHDGEAGI-EEGCLSVPEQRALVTRAESIKVRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEK 161
>gi|156932268|ref|YP_001436184.1| peptide deformylase [Cronobacter sakazakii ATCC BAA-894]
gi|424801326|ref|ZP_18226868.1| Peptide deformylase [Cronobacter sakazakii 696]
gi|166198516|sp|A7MPE9.1|DEF_ENTS8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|156530522|gb|ABU75348.1| hypothetical protein ESA_00039 [Cronobacter sakazakii ATCC BAA-894]
gi|423237047|emb|CCK08738.1| Peptide deformylase [Cronobacter sakazakii 696]
Length = 171
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+ +AEP+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRDGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEK 161
>gi|387130877|ref|YP_006293767.1| Peptide deformylase [Methylophaga sp. JAM7]
gi|386272166|gb|AFJ03080.1| Peptide deformylase [Methylophaga sp. JAM7]
Length = 167
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+L I++YPD RL+ A+P+ + +++++ +M ETMY A GIGLAA QVDI ++++
Sbjct: 1 MTILNILHYPDPRLRNKAQPVESVNNDVRQLAEDMLETMYDAPGIGLAAIQVDIPLRVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ + + INP+I+ + ++ + EGCLS+P + + R+ IR AL+++G +
Sbjct: 61 IDISEDKSAPMILINPEILEKNGQRD-FQEGCLSVPEAYETVTRADTIRFQALDLDGNPY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E AEGLLA C+QHEIDHL+GK+F++YLSN K+ERI KK K+ K+
Sbjct: 120 EQDAEGLLATCIQHEIDHLDGKLFVDYLSNLKRERIRKKIEKHTKQ 165
>gi|336247453|ref|YP_004591163.1| peptide deformylase [Enterobacter aerogenes KCTC 2190]
gi|334733509|gb|AEG95884.1| peptide deformylase [Enterobacter aerogenes KCTC 2190]
Length = 169
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+AEP+ E + +++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ E I EGCLS+P + R++ +++ AL+ EGK F
Sbjct: 61 IDVSENREERLVLINPELLEKDGETGI-EEGCLSIPEQRALVPRAETVKIRALDREGKTF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|309785609|ref|ZP_07680240.1| peptide deformylase [Shigella dysenteriae 1617]
gi|308926729|gb|EFP72205.1| peptide deformylase [Shigella dysenteriae 1617]
Length = 169
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEGGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|381150289|ref|ZP_09862158.1| peptide deformylase [Methylomicrobium album BG8]
gi|380882261|gb|EIC28138.1| peptide deformylase [Methylomicrobium album BG8]
Length = 170
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ +PD RL+K AE + D +++K++ +M ETMY + G+GLAA+QV++ +++++
Sbjct: 1 MSILTILEFPDERLRKKAEKVQAIDDSIRKLVDDMFETMYESRGVGLAATQVNVQRRVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N INP+I+ ++ EGCLS+PG F K++R++ +RV ALN +G+ F
Sbjct: 61 IDVSEEKNVPLCLINPEIVAKDGVEE-SEEGCLSVPGFFEKVQRAEHVRVKALNRDGQPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A LLA+C+QHEIDHL+GK+F++YLS K++RI KK K
Sbjct: 120 ELEARDLLAVCIQHEIDHLDGKLFVDYLSPLKRQRIKKKLEK 161
>gi|268593574|ref|ZP_06127795.1| peptide deformylase [Providencia rettgeri DSM 1131]
gi|291310851|gb|EFE51304.1| peptide deformylase [Providencia rettgeri DSM 1131]
Length = 173
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+ IA+P+ + D ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLNVLHYPDERLRTIAKPVDKVDASIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + V INP+++ S E I EGCLS+P + R+++++V ALN G+ F
Sbjct: 61 IDVSETRDDRLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEQVKVRALNYNGESF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEK 161
>gi|241202826|ref|YP_002973922.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240856716|gb|ACS54383.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 171
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DI++ Q QVFINP+++ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDIAREGEEKQPQVFINPEVVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|392543418|ref|ZP_10290555.1| peptide deformylase [Pseudoalteromonas piscicida JCM 20779]
Length = 170
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAILEVLKFPDERLRTVAQPVAEVNDEVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ +V INP+I + EGCLS+P + K+ R++ + V A N G+ +
Sbjct: 61 IDVSEERDEPRVLINPEITKRDG-STVSEEGCLSVPYSYAKVDRAETVTVKATNEHGETY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLA+C+QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 ELDADGLLAVCIQHELDHLVGKLFIDYLSPLKRDRIRKKLEKEAK 164
>gi|237728621|ref|ZP_04559102.1| peptide deformylase [Citrobacter sp. 30_2]
gi|283835704|ref|ZP_06355445.1| hypothetical protein CIT292_10096 [Citrobacter youngae ATCC 29220]
gi|365102971|ref|ZP_09333077.1| peptide deformylase [Citrobacter freundii 4_7_47CFAA]
gi|226909243|gb|EEH95161.1| peptide deformylase [Citrobacter sp. 30_2]
gi|291068383|gb|EFE06492.1| peptide deformylase [Citrobacter youngae ATCC 29220]
gi|363645822|gb|EHL85077.1| peptide deformylase [Citrobacter freundii 4_7_47CFAA]
Length = 169
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDEQLVLINPELLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|183600719|ref|ZP_02962212.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827]
gi|386743665|ref|YP_006216844.1| peptide deformylase [Providencia stuartii MRSN 2154]
gi|188019699|gb|EDU57739.1| peptide deformylase [Providencia stuartii ATCC 25827]
gi|384480358|gb|AFH94153.1| peptide deformylase [Providencia stuartii MRSN 2154]
Length = 174
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+ IA+P+ + D +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLNVLHYPDERLRTIAKPVEKVDAEIQQIVDDMFETMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+++ S E I EGCLS+P + R++ ++V AL+ G F
Sbjct: 61 IDVSETRDQRLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEHVKVRALDYNGDSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEK 161
>gi|24371632|ref|NP_715674.1| peptide deformylase Def [Shewanella oneidensis MR-1]
gi|32363158|sp|Q8EKQ8.1|DEF1_SHEON RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|24345388|gb|AAN53119.1| peptide deformylase Def [Shewanella oneidensis MR-1]
Length = 168
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 114/166 (68%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ A PITEF+ L+ I +M ETMY GIGLAA+QVD HKQL++
Sbjct: 1 MALLKVLRFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +VFINP+II S + EGCLS+PGI+ K+ R++ + V AL+ G F
Sbjct: 61 MDLQDEVERPKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ L AIC+QHE+DHL GK+F++YLS K++RI +K K K+
Sbjct: 120 TVEADDLFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAKQ 165
>gi|423122393|ref|ZP_17110077.1| peptide deformylase [Klebsiella oxytoca 10-5246]
gi|376392210|gb|EHT04875.1| peptide deformylase [Klebsiella oxytoca 10-5246]
Length = 169
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+AEP+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ E I EGCLS+P + R++ +++ AL+ EGK F
Sbjct: 61 IDVSENREEQLVLINPELLEKDGETGI-EEGCLSIPEQRALVPRAETVKIRALDREGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELNADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|417103872|ref|ZP_11961221.1| peptide deformylase protein [Rhizobium etli CNPAF512]
gi|327191106|gb|EGE58154.1| peptide deformylase protein [Rhizobium etli CNPAF512]
Length = 171
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVEYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167
>gi|300822910|ref|ZP_07103046.1| peptide deformylase [Escherichia coli MS 119-7]
gi|300524676|gb|EFK45745.1| peptide deformylase [Escherichia coli MS 119-7]
Length = 169
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKLKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|451811767|ref|YP_007448222.1| peptide deformylase [Candidatus Kinetoplastibacterium crithidii
TCC036E]
gi|451776925|gb|AGF47924.1| peptide deformylase [Candidatus Kinetoplastibacterium crithidii
TCC036E]
Length = 168
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 114/162 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL+ +A+ IT F+ + KI+ +M TMYH+ GIGLAA+QVDIHK++++
Sbjct: 1 MILLPILKYPDERLRIVADQITCFNEQIAKIVEDMAYTMYHSNGIGLAATQVDIHKRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ N L V INP+I+ +S K++ EGCLS+ + K++R I A + G
Sbjct: 61 IDISEERNNLMVLINPEIVTFSDTKELSEEGCLSVFDTYEKVQRFCSITCKAYDQYGVAK 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
I A GLL+ C+QHEIDHLNG+IFI+YLS+ K++RI + K
Sbjct: 121 TIDAYGLLSRCIQHEIDHLNGRIFIDYLSSLKRDRISSRIKK 162
>gi|398349954|ref|YP_006395418.1| peptide deformylase Def [Sinorhizobium fredii USDA 257]
gi|390125280|gb|AFL48661.1| peptide deformylase Def [Sinorhizobium fredii USDA 257]
Length = 174
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++++ P+ D +++++ +M ETMY A GIGLAA Q+ + ++LL+
Sbjct: 1 MTIKPLIILPDPVLRQVSTPVETIDDDIRRLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD+SK + + VFINPKI+ S+E+ +Y EGCLS+P + +++R I V + +GK
Sbjct: 61 LDVSKEGEEKKPLVFINPKIVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEFRDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K++ +I+KF K K
Sbjct: 121 EQSVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAK 167
>gi|417792982|ref|ZP_12440281.1| peptide deformylase [Cronobacter sakazakii E899]
gi|429117062|ref|ZP_19177980.1| Peptide deformylase [Cronobacter sakazakii 701]
gi|429121506|ref|ZP_19182127.1| Peptide deformylase [Cronobacter sakazakii 680]
gi|449306570|ref|YP_007438926.1| peptide deformylase [Cronobacter sakazakii SP291]
gi|333952960|gb|EGL70963.1| peptide deformylase [Cronobacter sakazakii E899]
gi|426320191|emb|CCK04093.1| Peptide deformylase [Cronobacter sakazakii 701]
gi|426323979|emb|CCK12864.1| Peptide deformylase [Cronobacter sakazakii 680]
gi|449096603|gb|AGE84637.1| peptide deformylase [Cronobacter sakazakii SP291]
Length = 171
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+ +AEP+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEK 161
>gi|261856667|ref|YP_003263950.1| peptide deformylase [Halothiobacillus neapolitanus c2]
gi|261837136|gb|ACX96903.1| peptide deformylase [Halothiobacillus neapolitanus c2]
Length = 171
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL ++ +PD RL+++A + +FD ++++ M ETMY A G+GLAA+Q+D+H+++ +
Sbjct: 1 MSLLEVLLFPDERLRRVAAEVKQFDARVQRLSEQMLETMYDARGVGLAATQIDVHERMFV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
D +++ + VFINP I+ S + EGCLS+PG+ +K+ R++ +RV A N G+
Sbjct: 61 ADCAEDGCAPEPLVFINPVILDRSGSVE-SEEGCLSIPGVTDKVMRAEAVRVRAQNAFGE 119
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
FE A GLLAIC+QHEIDHL+G++FI+YLS K++RI KK K +++
Sbjct: 120 SFEREAGGLLAICIQHEIDHLDGRLFIDYLSPLKRQRIRKKLEKALRQ 167
>gi|392310462|ref|ZP_10272996.1| peptide deformylase [Pseudoalteromonas citrea NCIMB 1889]
Length = 169
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ +A+P+T+ + +++II +M ETMY GIGLAA+QV+IH+++++
Sbjct: 1 MAKLEVLRFPDERLRTVAQPVTDVNDEIRQIINDMKETMYDENGIGLAATQVNIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ V INP+II + + EGCLS+P + K+ R++ ++V AL+ GK F
Sbjct: 61 IDVSEERNEAMVLINPEIIE-KEGSTVSEEGCLSVPYSYAKVDRAESVKVKALDENGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 QYEADGLLAICTQHELDHLLGKLFIDYLSPLKRQRIRKKLEKEAK 164
>gi|418021014|ref|ZP_12660185.1| peptide deformylase [Candidatus Regiella insecticola R5.15]
gi|347603632|gb|EGY28426.1| peptide deformylase [Candidatus Regiella insecticola R5.15]
Length = 174
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 125/171 (73%), Gaps = 10/171 (5%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+++PD++L+KIA+P+ + D N+++I+ +M +TMY GIGLAA+QV+IHKQ+++
Sbjct: 1 MSILKILHFPDVQLRKIAKPVEKIDANIERIVDDMFDTMYAEEGIGLAATQVNIHKQIIV 60
Query: 61 LDISKNNNQLQ---------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVH 111
+ IS + +Q + V INP+++ S E I EGCLS+PG+ ++ RS+++++
Sbjct: 61 IHISDDRDQNERTEAHHCPLVLINPELLEESGETGI-EEGCLSIPGVRARVTRSEKVKIR 119
Query: 112 ALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
AL+ +G F + A+GLLAIC+QHE+DHL GK+FI+YLS K +RI KK K
Sbjct: 120 ALDRDGNSFTLEADGLLAICIQHEMDHLKGKLFIDYLSPLKFQRIQKKIEK 170
>gi|365846736|ref|ZP_09387236.1| peptide deformylase [Yokenella regensburgei ATCC 43003]
gi|364573466|gb|EHM50962.1| peptide deformylase [Yokenella regensburgei ATCC 43003]
Length = 169
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+AEP+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLHVLHIPDERLRKVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP ++ S E I EGCLS+P + R++ +++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPTLLEKSGETGI-EEGCLSIPEQRALVPRAETVKISALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|212709012|ref|ZP_03317140.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM
30120]
gi|422020864|ref|ZP_16367390.1| peptide deformylase [Providencia alcalifaciens Dmel2]
gi|212688378|gb|EEB47906.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM
30120]
gi|414100359|gb|EKT61978.1| peptide deformylase [Providencia alcalifaciens Dmel2]
Length = 173
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+ +A+P+ + D ++++II +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLNVLHYPDERLRTVAKPVEKVDASIQRIIDDMFDTMYDEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+ V INP+++ E I EGCLS+P + R+++++V ALN G F
Sbjct: 61 IDVSESRNERLVLINPELLNKEGETGI-EEGCLSVPEQHGFVPRAEKVKVRALNYNGDAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEK 161
>gi|304399256|ref|ZP_07381122.1| peptide deformylase [Pantoea sp. aB]
gi|440759390|ref|ZP_20938530.1| Peptide deformylase [Pantoea agglomerans 299R]
gi|304353182|gb|EFM17563.1| peptide deformylase [Pantoea sp. aB]
gi|436426878|gb|ELP24575.1| Peptide deformylase [Pantoea agglomerans 299R]
Length = 170
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+K+A P+ E + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + V INP+++ S E I EGCLS+P + R++R++V AL+ +G F
Sbjct: 61 IDVSESREERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDRDGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A LLAIC+QHEIDHL GK+FI+YLS K++RI K K
Sbjct: 120 ELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEK 161
>gi|300721398|ref|YP_003710669.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
gi|297627886|emb|CBJ88432.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
Length = 170
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+ IA+P+ + D +++II +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHYPDERLRTIAKPVEKVDAEIQRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ QL V INP+++ S E I EGCLS+P + R ++I++ AL+ G+ F
Sbjct: 61 IDVSEDRKQLLVLINPELLNESGETGI-EEGCLSVPEQRGFVPRFEQIKIKALDYHGQPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEK 161
>gi|387887663|ref|YP_006317961.1| peptide deformylase [Escherichia blattae DSM 4481]
gi|414595863|ref|ZP_11445470.1| peptide deformylase [Escherichia blattae NBRC 105725]
gi|386922496|gb|AFJ45450.1| peptide deformylase [Escherichia blattae DSM 4481]
gi|403193151|dbj|GAB83122.1| peptide deformylase [Escherichia blattae NBRC 105725]
Length = 170
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ +AEP+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLHVLHFPDERLRTVAEPVKEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+++NQ V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDISEHHNQQLVLINPELLEKSGETGI-EEGCLSVPEQRALVPRAEKVKIRALDRDGNTF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKVEK 161
>gi|440232805|ref|YP_007346598.1| peptide deformylase [Serratia marcescens FGI94]
gi|440054510|gb|AGB84413.1| peptide deformylase [Serratia marcescens FGI94]
Length = 172
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+K+A P+ E + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+++ S E I EGCLS+P + R++++++ AL+ GK F
Sbjct: 61 IDVSETRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDYNGKTF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEK 161
>gi|432539632|ref|ZP_19776525.1| peptide deformylase [Escherichia coli KTE235]
gi|432667839|ref|ZP_19903411.1| peptide deformylase [Escherichia coli KTE116]
gi|431067048|gb|ELD75657.1| peptide deformylase [Escherichia coli KTE235]
gi|431197670|gb|ELE96497.1| peptide deformylase [Escherichia coli KTE116]
Length = 169
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYVEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|421080412|ref|ZP_15541345.1| Peptide deformylase [Pectobacterium wasabiae CFBP 3304]
gi|401704844|gb|EJS95034.1| Peptide deformylase [Pectobacterium wasabiae CFBP 3304]
Length = 170
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 122/166 (73%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ A+P+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP++I S E I EGCLS+P + R++ ++V AL+ EGK+F
Sbjct: 61 IDVSEERDQRLVLINPELIEKSGETGI-EEGCLSIPETRALVPRAEHVKVRALDREGKVF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A LLAIC+QHE+DHL GK+FI+YLS K++RI +K K K+
Sbjct: 120 ELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165
>gi|378824654|ref|YP_005187386.1| peptide deformylase [Sinorhizobium fredii HH103]
gi|365177706|emb|CCE94561.1| peptide deformylase [Sinorhizobium fredii HH103]
Length = 174
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++++ P+ D +++++ +M ETMY A GIGLAA Q+ + K+LL+
Sbjct: 1 MTIKPLIILPDPILRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVSKRLLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD+SK + + VFINPKI+ ++E+ +Y EGCLS+P + +++R I V + +GK
Sbjct: 61 LDVSKEGEEKKPLVFINPKIVKSTEERSVYEEGCLSIPDYYAEVERPAGITVEYRDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K++ +I+KF K K
Sbjct: 121 EQSVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAK 167
>gi|190890084|ref|YP_001976626.1| peptide deformylase [Rhizobium etli CIAT 652]
gi|190695363|gb|ACE89448.1| peptide deformylase protein [Rhizobium etli CIAT 652]
Length = 171
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D +L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167
>gi|423126056|ref|ZP_17113735.1| peptide deformylase [Klebsiella oxytoca 10-5250]
gi|376397628|gb|EHT10258.1| peptide deformylase [Klebsiella oxytoca 10-5250]
Length = 169
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNTEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ S E I EGCLS+P + R++++++ AL+ +GK +
Sbjct: 61 IDVSENREEQLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|409204031|ref|ZP_11232231.1| peptide deformylase [Pseudoalteromonas flavipulchra JG1]
Length = 170
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAILEVLKFPDERLRTVAQPVAEINDEVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ +V INP+I + EGCLS+P + K+ R++ + V A N G+ +
Sbjct: 61 IDVSEERDEPRVLINPEITKRDG-STVSEEGCLSVPYSYAKVDRAETVTVKATNEHGETY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLA+C+QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 ELDADGLLAVCIQHELDHLVGKLFIDYLSPLKRDRIRKKLEKEAK 164
>gi|381403013|ref|ZP_09927697.1| peptide deformylase [Pantoea sp. Sc1]
gi|380736212|gb|EIB97275.1| peptide deformylase [Pantoea sp. Sc1]
Length = 170
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+K+A P+ E + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + V INP+++ S E I EGCLS+P + R++R++V AL+ +G F
Sbjct: 61 IDVSESREERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAERVKVRALDRDGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A LLAIC+QHEIDHL GK+FI+YLS K++RI + K
Sbjct: 120 ELEASDLLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTRLEK 161
>gi|292489813|ref|YP_003532703.1| peptide deformylase [Erwinia amylovora CFBP1430]
gi|292900855|ref|YP_003540224.1| polypeptide deformylase [Erwinia amylovora ATCC 49946]
gi|428786794|ref|ZP_19004271.1| peptide deformylase [Erwinia amylovora ACW56400]
gi|291200703|emb|CBJ47836.1| polypeptide deformylase [Erwinia amylovora ATCC 49946]
gi|291555250|emb|CBA23521.1| peptide deformylase [Erwinia amylovora CFBP1430]
gi|312173996|emb|CBX82249.1| peptide deformylase [Erwinia amylovora ATCC BAA-2158]
gi|426274635|gb|EKV52376.1| peptide deformylase [Erwinia amylovora ACW56400]
Length = 169
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ +A+P+ E + N+++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSESRDERLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHELDHLVGKLFIDYLSPMKRQRIRQKLEK 161
>gi|410629253|ref|ZP_11339957.1| peptide deformylase [Glaciecola mesophila KMM 241]
gi|410151049|dbj|GAC26726.1| peptide deformylase [Glaciecola mesophila KMM 241]
Length = 169
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ + D ++K ++ +M ETM GIGLAA+Q+D+HK++++
Sbjct: 1 MAILDVLRFPDERLRTVATPVDKIDSSIKTLVSDMLETMKDENGIGLAATQIDVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ QVFINP+I + I EGCLS+P + K++R+++I V AL+ G F
Sbjct: 61 IDVSEEQDKPQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAEKITVKALDENGDAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI K K +
Sbjct: 120 TLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEAR 164
>gi|402851222|ref|ZP_10899392.1| Peptide deformylase [Rhodovulum sp. PH10]
gi|402498514|gb|EJW10256.1| Peptide deformylase [Rhodovulum sp. PH10]
Length = 174
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 115/164 (70%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD RL+ ++EP+T D +K ++ +M ETMY A GIGLAA QV + K+++
Sbjct: 1 MALRDIIVLPDKRLRLVSEPVTLIDDEIKTLVADMFETMYKAPGIGLAAIQVGVAKRVVT 60
Query: 61 LDISKNNNQ--LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD+S+ +++ + FINP+I+W S++ +Y EGCLS+P I ++R ++++V L++EG+
Sbjct: 61 LDVSRKDDEKNPKAFINPQIVWASEDLNVYEEGCLSIPDIHEDVERPEKVKVRYLDLEGR 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GL A C+QHEIDHLNG +FI+++S K+ I KKF K
Sbjct: 121 TREEDADGLFATCIQHEIDHLNGVLFIDHISRLKRHFITKKFTK 164
>gi|170724408|ref|YP_001758434.1| peptide deformylase [Shewanella woodyi ATCC 51908]
gi|169809755|gb|ACA84339.1| peptide deformylase [Shewanella woodyi ATCC 51908]
Length = 169
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 117/166 (70%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL ++ +PD +L+ IA+P+TEF+ +L+ I NM ETMY GIGLAA+QVD H QL++
Sbjct: 1 MSLLKVLRFPDEKLRTIAKPVTEFNADLQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +VFIN +I+ S + EGCLS+PGIF ++R++ + + AL+ EG F
Sbjct: 61 MDLQDEVERPKVFINLEIVASSGHFE-NEEGCLSVPGIFANVERAEHVTIKALDREGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+GL ICLQHE+DHL GK+F++YLS K++RI +K K ++
Sbjct: 120 TLEADGLFGICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARQ 165
>gi|38639603|ref|NP_943372.1| peptide deformylase [Klebsiella pneumoniae CG43]
gi|168998831|ref|YP_001688099.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044]
gi|262040714|ref|ZP_06013948.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|424833487|ref|ZP_18258210.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|449060203|ref|ZP_21737869.1| peptide deformylase [Klebsiella pneumoniae hvKP1]
gi|38016701|gb|AAR07722.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae
CG43]
gi|238549851|dbj|BAH66202.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|259041938|gb|EEW42975.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|414710875|emb|CCN32523.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|448874078|gb|EMB09139.1| peptide deformylase [Klebsiella pneumoniae hvKP1]
Length = 169
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ ALN GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALNRYGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|126640269|ref|YP_001083253.1| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
ATCC 17978]
Length = 142
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 104/132 (78%)
Query: 35 MTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLS 94
M ETMY A GIGLAASQVD H QL+++D+S++ ++ VFINPK+ ++E Q Y EGCLS
Sbjct: 1 MFETMYAAPGIGLAASQVDRHIQLIVMDLSESKDEPMVFINPKVTPLTEETQPYEEGCLS 60
Query: 95 LPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKE 154
+P I++K+ R R+++ A+N+EG+ FEI A+GLLA+C+QHE+DHLNGK+F++YLS K++
Sbjct: 61 VPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQ 120
Query: 155 RIIKKFLKNIKK 166
R +K K +++
Sbjct: 121 RAREKVEKIVRQ 132
>gi|16766695|ref|NP_462310.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56415326|ref|YP_152401.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|62181912|ref|YP_218329.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161616432|ref|YP_001590397.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|167554203|ref|ZP_02347944.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167995181|ref|ZP_02576271.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168239761|ref|ZP_02664819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168245233|ref|ZP_02670165.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168264713|ref|ZP_02686686.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168468037|ref|ZP_02701874.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|168823236|ref|ZP_02835236.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194444564|ref|YP_002042658.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194451296|ref|YP_002047431.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194734454|ref|YP_002116350.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197248664|ref|YP_002148327.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197265509|ref|ZP_03165583.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197364256|ref|YP_002143893.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|198245506|ref|YP_002217370.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|200388386|ref|ZP_03214998.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|205354966|ref|YP_002228767.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207858648|ref|YP_002245299.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|238913879|ref|ZP_04657716.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|374978044|ref|ZP_09719387.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|375003267|ref|ZP_09727606.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|375116252|ref|ZP_09761422.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|375120884|ref|ZP_09766051.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|375125865|ref|ZP_09771029.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|378446784|ref|YP_005234416.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378452236|ref|YP_005239596.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378701300|ref|YP_005183258.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378957745|ref|YP_005215232.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|378986000|ref|YP_005249156.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|378990711|ref|YP_005253875.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379702665|ref|YP_005244393.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|386593083|ref|YP_006089483.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|409247118|ref|YP_006887818.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|416424235|ref|ZP_11691492.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416435015|ref|ZP_11697985.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416437076|ref|ZP_11698601.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416448822|ref|ZP_11706526.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416453439|ref|ZP_11709585.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416461762|ref|ZP_11715464.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416462971|ref|ZP_11715742.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416476112|ref|ZP_11720956.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416489902|ref|ZP_11726504.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416502489|ref|ZP_11732801.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416510251|ref|ZP_11736926.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416516402|ref|ZP_11739084.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416525276|ref|ZP_11741538.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416539549|ref|ZP_11750009.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416543700|ref|ZP_11752425.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416552264|ref|ZP_11756987.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|416559524|ref|ZP_11760749.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|416567099|ref|ZP_11764182.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|416575691|ref|ZP_11768507.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416582085|ref|ZP_11772423.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416595301|ref|ZP_11781114.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416602554|ref|ZP_11785350.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416606256|ref|ZP_11787630.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416613523|ref|ZP_11792077.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416618639|ref|ZP_11794652.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416634990|ref|ZP_11802841.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416641507|ref|ZP_11805499.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416647707|ref|ZP_11808537.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416659335|ref|ZP_11814772.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|416668367|ref|ZP_11818864.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416672431|ref|ZP_11820693.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416692148|ref|ZP_11826348.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416704457|ref|ZP_11830279.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|416714220|ref|ZP_11837612.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416720709|ref|ZP_11842310.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416721772|ref|ZP_11842893.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416729761|ref|ZP_11848246.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416741933|ref|ZP_11855459.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|416747464|ref|ZP_11858238.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416754114|ref|ZP_11861133.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416763310|ref|ZP_11866999.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416766414|ref|ZP_11869109.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|418482262|ref|ZP_13051284.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418489969|ref|ZP_13056527.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|418495171|ref|ZP_13061615.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418498826|ref|ZP_13065239.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418503543|ref|ZP_13069903.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418510120|ref|ZP_13076408.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|418515108|ref|ZP_13081296.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|418525413|ref|ZP_13091394.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|418760135|ref|ZP_13316296.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|418767909|ref|ZP_13323965.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|418768861|ref|ZP_13324903.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|418782102|ref|ZP_13337969.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|418784160|ref|ZP_13339998.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|418789936|ref|ZP_13345718.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|418792629|ref|ZP_13348370.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|418800388|ref|ZP_13356046.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|418806609|ref|ZP_13362179.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418810771|ref|ZP_13366308.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418818466|ref|ZP_13373938.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418823796|ref|ZP_13379197.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418829208|ref|ZP_13384195.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418837896|ref|ZP_13392754.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418841710|ref|ZP_13396527.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418846622|ref|ZP_13401389.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|418851536|ref|ZP_13406247.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418854707|ref|ZP_13409373.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|418861140|ref|ZP_13415709.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418865700|ref|ZP_13420173.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|418870620|ref|ZP_13425034.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|419730650|ref|ZP_14257585.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419734815|ref|ZP_14261699.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419741484|ref|ZP_14268176.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419743265|ref|ZP_14269930.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419750256|ref|ZP_14276720.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|419787944|ref|ZP_14313645.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|419794884|ref|ZP_14320490.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|421356755|ref|ZP_15807074.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421365472|ref|ZP_15815693.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421365563|ref|ZP_15815780.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421374526|ref|ZP_15824656.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421374610|ref|ZP_15824737.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421383204|ref|ZP_15833244.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421387341|ref|ZP_15837343.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421388563|ref|ZP_15838552.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421392758|ref|ZP_15842708.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421400250|ref|ZP_15850139.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421403431|ref|ZP_15853279.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421408079|ref|ZP_15857882.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421412276|ref|ZP_15862034.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421418307|ref|ZP_15868011.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421419693|ref|ZP_15869381.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421428044|ref|ZP_15877660.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421432547|ref|ZP_15882117.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421437139|ref|ZP_15886662.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421441582|ref|ZP_15891049.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421445488|ref|ZP_15894913.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421450098|ref|ZP_15899476.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|421571758|ref|ZP_16017426.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421575477|ref|ZP_16021090.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421578886|ref|ZP_16024456.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421586043|ref|ZP_16031526.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|421882972|ref|ZP_16314220.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|422027635|ref|ZP_16373967.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422032677|ref|ZP_16378776.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|423141922|ref|ZP_17129560.1| peptide deformylase [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|427554651|ref|ZP_18929269.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427572288|ref|ZP_18933879.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427593803|ref|ZP_18938787.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427617901|ref|ZP_18943698.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427641323|ref|ZP_18948552.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427657663|ref|ZP_18953299.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427662881|ref|ZP_18958171.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427678038|ref|ZP_18963078.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427800754|ref|ZP_18968457.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|436592460|ref|ZP_20512218.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|436793004|ref|ZP_20521624.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|436796411|ref|ZP_20522836.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436810104|ref|ZP_20529321.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436812097|ref|ZP_20530754.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436846462|ref|ZP_20539299.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436848343|ref|ZP_20540050.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436854765|ref|ZP_20544229.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436861647|ref|ZP_20548662.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436874392|ref|ZP_20556945.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436883849|ref|ZP_20562093.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436890477|ref|ZP_20565806.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436892216|ref|ZP_20566644.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436903380|ref|ZP_20573802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436907863|ref|ZP_20575619.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436921644|ref|ZP_20583915.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436929885|ref|ZP_20588454.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436931787|ref|ZP_20589228.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436939623|ref|ZP_20593903.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436949831|ref|ZP_20599605.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436965070|ref|ZP_20606465.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436975470|ref|ZP_20611607.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436984155|ref|ZP_20614368.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436988813|ref|ZP_20616322.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437011586|ref|ZP_20624554.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437019116|ref|ZP_20626987.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437034167|ref|ZP_20632907.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437046798|ref|ZP_20638591.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437052918|ref|ZP_20642199.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437055215|ref|ZP_20643421.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437062840|ref|ZP_20647728.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437077275|ref|ZP_20655431.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437085887|ref|ZP_20660311.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437096196|ref|ZP_20664814.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437102113|ref|ZP_20666430.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437121914|ref|ZP_20672000.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437130192|ref|ZP_20676486.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437138299|ref|ZP_20680909.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437147452|ref|ZP_20686842.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437156077|ref|ZP_20692035.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437160446|ref|ZP_20694631.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437164666|ref|ZP_20697248.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437179349|ref|ZP_20705328.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437180966|ref|ZP_20706285.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437194265|ref|ZP_20710967.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437263676|ref|ZP_20719622.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437268878|ref|ZP_20722192.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437279823|ref|ZP_20727809.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437289694|ref|ZP_20731127.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437305335|ref|ZP_20734210.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437324951|ref|ZP_20739970.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437343420|ref|ZP_20745784.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437384626|ref|ZP_20750610.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437412485|ref|ZP_20753375.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437442482|ref|ZP_20757868.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437462134|ref|ZP_20762527.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437471823|ref|ZP_20765328.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437496225|ref|ZP_20773165.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437501622|ref|ZP_20774378.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437544070|ref|ZP_20782788.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437560368|ref|ZP_20786013.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437574283|ref|ZP_20789688.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437585627|ref|ZP_20792984.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437599166|ref|ZP_20796813.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437618309|ref|ZP_20803110.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437635202|ref|ZP_20807098.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437664882|ref|ZP_20814457.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437686061|ref|ZP_20819275.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437700770|ref|ZP_20823942.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437717810|ref|ZP_20828408.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437737173|ref|ZP_20832905.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437796278|ref|ZP_20837580.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437803237|ref|ZP_20838526.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437822753|ref|ZP_20843463.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|437848810|ref|ZP_20847193.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438044395|ref|ZP_20855944.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438094309|ref|ZP_20861644.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438104925|ref|ZP_20866080.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438113846|ref|ZP_20869785.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|440763488|ref|ZP_20942527.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
gi|440766154|ref|ZP_20945154.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|440772259|ref|ZP_20951165.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|445135968|ref|ZP_21383404.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|445144550|ref|ZP_21387147.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|445155494|ref|ZP_21392324.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|445174212|ref|ZP_21396997.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445232939|ref|ZP_21406218.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445250376|ref|ZP_21408807.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445336419|ref|ZP_21415710.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445348655|ref|ZP_21419684.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445364221|ref|ZP_21424885.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|452122781|ref|YP_007473029.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|23396546|sp|Q8ZLM7.1|DEF_SALTY RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|75505525|sp|Q57J64.1|DEF_SALCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|81677960|sp|Q5PIT8.1|DEF_SALPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189083078|sp|A9N8B1.1|DEF_SALPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238690058|sp|B5F7R3.1|DEF_SALA4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238690317|sp|B5FJI2.1|DEF_SALDC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238690438|sp|B5R1E3.1|DEF_SALEP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238690545|sp|B5RH49.1|DEF_SALG2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238690672|sp|B4TJX7.1|DEF_SALHS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238690738|sp|B5BGV3.1|DEF_SALPK RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238693518|sp|B4SUQ8.1|DEF_SALNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238693718|sp|B4TXB0.1|DEF_SALSV RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|16421962|gb|AAL22269.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56129583|gb|AAV79089.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62129545|gb|AAX67248.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161365796|gb|ABX69564.1| hypothetical protein SPAB_04247 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403227|gb|ACF63449.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194409600|gb|ACF69819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194709956|gb|ACF89177.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195628902|gb|EDX48312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197095733|emb|CAR61303.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197212367|gb|ACH49764.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197243764|gb|EDY26384.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197287582|gb|EDY26974.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197940022|gb|ACH77355.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199605484|gb|EDZ04029.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|205274747|emb|CAR39803.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205321541|gb|EDZ09380.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205327093|gb|EDZ13857.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205336019|gb|EDZ22783.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205340500|gb|EDZ27264.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205346889|gb|EDZ33520.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206710451|emb|CAR34809.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261248563|emb|CBG26401.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995615|gb|ACY90500.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301159949|emb|CBW19468.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914429|dbj|BAJ38403.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|320087852|emb|CBY97615.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|321226458|gb|EFX51508.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322615053|gb|EFY11977.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322617340|gb|EFY14241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322625562|gb|EFY22387.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322626404|gb|EFY23213.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632084|gb|EFY28837.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322635037|gb|EFY31760.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322643262|gb|EFY39829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322646654|gb|EFY43161.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322650000|gb|EFY46419.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322652717|gb|EFY49057.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322659526|gb|EFY55770.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322665532|gb|EFY61719.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322670426|gb|EFY66565.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322670499|gb|EFY66633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322675075|gb|EFY71158.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681612|gb|EFY77641.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322685956|gb|EFY81945.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|322716398|gb|EFZ07969.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|323131764|gb|ADX19194.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|323195826|gb|EFZ80999.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323196418|gb|EFZ81569.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323202703|gb|EFZ87742.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323211256|gb|EFZ96101.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323216035|gb|EGA00766.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323223474|gb|EGA07802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323226796|gb|EGA10986.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323231842|gb|EGA15952.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323233205|gb|EGA17300.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323237272|gb|EGA21337.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323245507|gb|EGA29506.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323249013|gb|EGA32935.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323250636|gb|EGA34517.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323256865|gb|EGA40579.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323263014|gb|EGA46561.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323266014|gb|EGA49509.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323272771|gb|EGA56174.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|326625151|gb|EGE31496.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|326630115|gb|EGE36458.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|332990258|gb|AEF09241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|353074182|gb|EHB39943.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|357208356|gb|AET56402.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|363549375|gb|EHL33729.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363559193|gb|EHL43368.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363559899|gb|EHL44048.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|363562419|gb|EHL46517.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363564750|gb|EHL48792.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363575879|gb|EHL59725.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|363579113|gb|EHL62907.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|366059720|gb|EHN23988.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366064235|gb|EHN28436.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366068340|gb|EHN32484.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|366072631|gb|EHN36720.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366073069|gb|EHN37147.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366077147|gb|EHN41167.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|366077224|gb|EHN41243.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|366830142|gb|EHN57015.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372206678|gb|EHP20181.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|379049851|gb|EHY67744.1| peptide deformylase [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379987480|emb|CCF86493.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|381291394|gb|EIC32636.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381293040|gb|EIC34212.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381295636|gb|EIC36745.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381307324|gb|EIC48182.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|381311750|gb|EIC52560.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|383800124|gb|AFH47206.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|392613592|gb|EIW96047.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|392618642|gb|EIX01037.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|392732699|gb|EIZ89906.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|392741482|gb|EIZ98582.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|392743804|gb|EJA00870.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|392744700|gb|EJA01744.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|392754504|gb|EJA11420.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|392759538|gb|EJA16389.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|392761213|gb|EJA18042.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|392767409|gb|EJA24178.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|392780457|gb|EJA37109.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392781767|gb|EJA38405.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392784632|gb|EJA41220.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392785463|gb|EJA42039.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392797442|gb|EJA53749.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392804888|gb|EJA61027.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392808071|gb|EJA64126.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392809831|gb|EJA65860.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|392817425|gb|EJA73339.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392823742|gb|EJA79536.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|392825302|gb|EJA81054.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392827297|gb|EJA83007.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|392830207|gb|EJA85863.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|395980539|gb|EJH89763.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395993169|gb|EJI02269.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|395993265|gb|EJI02361.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395994044|gb|EJI03126.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|395995964|gb|EJI05021.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396007730|gb|EJI16674.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396009567|gb|EJI18492.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396020062|gb|EJI28911.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396020080|gb|EJI28928.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396024172|gb|EJI32960.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396028930|gb|EJI37682.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396028991|gb|EJI37741.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396038531|gb|EJI47167.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396043168|gb|EJI51781.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396048001|gb|EJI56567.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396049541|gb|EJI58080.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396050074|gb|EJI58607.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396050751|gb|EJI59272.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396063456|gb|EJI71848.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|396065081|gb|EJI73460.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|396067917|gb|EJI76270.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|402519313|gb|EJW26675.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402522517|gb|EJW29841.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402522857|gb|EJW30176.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402528768|gb|EJW36017.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|414013916|gb|EKS97778.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414015179|gb|EKS99005.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414015490|gb|EKS99304.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414028656|gb|EKT11833.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414030034|gb|EKT13176.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414032160|gb|EKT15172.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414043519|gb|EKT26018.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414043737|gb|EKT26221.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414048732|gb|EKT30967.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414056581|gb|EKT38393.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414063089|gb|EKT44287.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|434955826|gb|ELL49625.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|434961543|gb|ELL54824.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434965789|gb|ELL58707.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434976584|gb|ELL68808.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434977773|gb|ELL69865.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434978405|gb|ELL70439.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434990714|gb|ELL82251.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434993782|gb|ELL85180.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434997006|gb|ELL88288.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435000435|gb|ELL91582.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435001208|gb|ELL92328.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435006515|gb|ELL97403.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435018779|gb|ELM09236.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435021392|gb|ELM11766.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435025053|gb|ELM15234.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435030728|gb|ELM20735.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435032914|gb|ELM22832.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435044614|gb|ELM34290.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435047401|gb|ELM36989.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435047462|gb|ELM37044.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435049701|gb|ELM39217.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435053030|gb|ELM42503.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435064361|gb|ELM53494.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435064697|gb|ELM53818.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435071970|gb|ELM60904.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435076252|gb|ELM65038.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435077204|gb|ELM65962.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435080591|gb|ELM69267.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435089816|gb|ELM78230.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435098986|gb|ELM87210.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435103564|gb|ELM91644.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435103616|gb|ELM91693.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435104141|gb|ELM92212.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435108147|gb|ELM96115.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435123138|gb|ELN10635.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435124382|gb|ELN11841.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435125890|gb|ELN13317.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435133296|gb|ELN20464.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435133887|gb|ELN21033.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435137334|gb|ELN24400.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435147260|gb|ELN34033.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435151136|gb|ELN37790.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435154764|gb|ELN41328.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435160589|gb|ELN46858.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435166963|gb|ELN52910.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435170791|gb|ELN56522.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435173462|gb|ELN58971.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435182283|gb|ELN67309.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435187390|gb|ELN72157.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435192147|gb|ELN76698.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435193202|gb|ELN77684.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435201727|gb|ELN85612.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435203297|gb|ELN87058.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435211441|gb|ELN94555.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435219625|gb|ELO01970.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435226173|gb|ELO07758.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435226748|gb|ELO08304.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435228945|gb|ELO10346.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435234479|gb|ELO15336.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435238495|gb|ELO19128.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435238512|gb|ELO19144.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435245932|gb|ELO25959.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435259397|gb|ELO38622.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435261337|gb|ELO40493.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435263560|gb|ELO42605.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435265432|gb|ELO44285.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435266836|gb|ELO45564.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435273498|gb|ELO51765.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435280681|gb|ELO58376.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435284155|gb|ELO61658.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435284882|gb|ELO62300.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435290681|gb|ELO67586.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435303502|gb|ELO79376.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435306471|gb|ELO81761.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|435314650|gb|ELO88044.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435320164|gb|ELO92830.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|435321882|gb|ELO94230.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435329262|gb|ELP00708.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|435338657|gb|ELP07849.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|436419226|gb|ELP17105.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|436419713|gb|ELP17587.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
gi|436423661|gb|ELP21468.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|444845578|gb|ELX70786.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|444846717|gb|ELX71873.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444848968|gb|ELX74086.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|444859296|gb|ELX84247.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444861823|gb|ELX86694.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444873963|gb|ELX98233.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444876035|gb|ELY00224.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444883293|gb|ELY07185.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|444889737|gb|ELY13140.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|451911785|gb|AGF83591.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 169
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|206580091|ref|YP_002236311.1| peptide deformylase [Klebsiella pneumoniae 342]
gi|288933300|ref|YP_003437359.1| peptide deformylase [Klebsiella variicola At-22]
gi|290512102|ref|ZP_06551470.1| peptide deformylase [Klebsiella sp. 1_1_55]
gi|238058213|sp|B5XNC4.1|DEF_KLEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|206569149|gb|ACI10925.1| peptide deformylase [Klebsiella pneumoniae 342]
gi|288888029|gb|ADC56347.1| peptide deformylase [Klebsiella variicola At-22]
gi|289775892|gb|EFD83892.1| peptide deformylase [Klebsiella sp. 1_1_55]
Length = 169
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+AEP+ E + +++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENREERLVLINPELLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|300946508|ref|ZP_07160774.1| peptide deformylase [Escherichia coli MS 116-1]
gi|300955324|ref|ZP_07167706.1| peptide deformylase [Escherichia coli MS 175-1]
gi|417290885|ref|ZP_12078166.1| peptide deformylase [Escherichia coli B41]
gi|419940143|ref|ZP_14456897.1| peptide deformylase [Escherichia coli 75]
gi|432738782|ref|ZP_19973516.1| peptide deformylase [Escherichia coli KTE42]
gi|300317768|gb|EFJ67552.1| peptide deformylase [Escherichia coli MS 175-1]
gi|300453814|gb|EFK17434.1| peptide deformylase [Escherichia coli MS 116-1]
gi|386253207|gb|EIJ02897.1| peptide deformylase [Escherichia coli B41]
gi|388404235|gb|EIL64722.1| peptide deformylase [Escherichia coli 75]
gi|431279810|gb|ELF70757.1| peptide deformylase [Escherichia coli KTE42]
Length = 169
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKICALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|410634872|ref|ZP_11345499.1| peptide deformylase [Glaciecola lipolytica E3]
gi|410145616|dbj|GAC12704.1| peptide deformylase [Glaciecola lipolytica E3]
Length = 170
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 119/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+P+ D +KK++ +M +TM GIGLAA+QV++HK++++
Sbjct: 1 MAILKVLKFPDERLRTVAKPVDNVDGEIKKLVDDMFDTMREENGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ N +VFINP+II + I EGCLS+P + K++R++ I V AL++EG +
Sbjct: 61 MDISEDQNTPRVFINPEIIEMDGQ-TISEEGCLSVPNSYAKVERAEHIIVKALDVEGNEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI K K +
Sbjct: 120 TLEADGLLAICIQHELDHLKGKLFVDYLSPLKRKRIRSKLEKEAR 164
>gi|221135272|ref|ZP_03561575.1| peptide deformylase [Glaciecola sp. HTCC2999]
Length = 169
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ A+P+ + + +++ ++ +M ETM G+GLAA+QV++H+Q+++
Sbjct: 1 MAVLTVLTFPDERLRTKAKPVNDINDSIRTLVADMFETMKAERGVGLAATQVNVHQQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + + VFINPK+I + +I EGCLS+P + K++R++ I+V ALN G+ F
Sbjct: 61 MDVSDDQDTPLVFINPKVI-EQRGTKINEEGCLSVPNNYAKVERAEWIKVSALNEHGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ AEGLLA+C+QHE+DHL GK+F++YLS+ K++RI+KK K +
Sbjct: 120 TMEAEGLLAVCIQHEMDHLQGKLFVDYLSSLKRQRIMKKLEKEAR 164
>gi|407717361|ref|YP_006838641.1| peptide deformylase 1 [Cycloclasticus sp. P1]
gi|407257697|gb|AFT68138.1| Peptide deformylase 1 [Cycloclasticus sp. P1]
Length = 176
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L I+++PD RL+ A IT FD L++ I +M ETMY A GIGLAA+QV+ HK+L++
Sbjct: 1 MTKLNILHFPDKRLRTKATDITVFDDELRQFIRDMFETMYAAPGIGLAATQVNYHKRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+ INP +I + + ++ EGCLS+PG + ++R++ + + A + GK F
Sbjct: 61 IDVSEDKNEQLCLINP-VITHKEGIEVMQEGCLSVPGFYEDVERAESVTISAQDEHGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLA+C+QHEIDHL+GK+F++YLS K+ RI KK ++
Sbjct: 120 ELTADDLLAVCIQHEIDHLDGKLFVDYLSPLKRNRIRKKLVR 161
>gi|113968375|ref|YP_732168.1| peptide deformylase [Shewanella sp. MR-4]
gi|114045540|ref|YP_736090.1| peptide deformylase [Shewanella sp. MR-7]
gi|117918494|ref|YP_867686.1| peptide deformylase [Shewanella sp. ANA-3]
gi|113883059|gb|ABI37111.1| peptide deformylase [Shewanella sp. MR-4]
gi|113886982|gb|ABI41033.1| peptide deformylase [Shewanella sp. MR-7]
gi|117610826|gb|ABK46280.1| peptide deformylase [Shewanella sp. ANA-3]
Length = 168
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 114/166 (68%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ A P+TEF L+ I +M ETMY GIGLAA+QVD HKQL++
Sbjct: 1 MALLKVLRFPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ ++ +VFINP+II S + EGCLS+PGI+ K+ R++ + V AL+ G F
Sbjct: 61 MDLQDEVDRPKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ L AIC+QHE+DHL GK+F++YLS K++RI +K K ++
Sbjct: 120 TVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARQ 165
>gi|152972195|ref|YP_001337341.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238896783|ref|YP_002921528.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|330002243|ref|ZP_08304254.1| peptide deformylase [Klebsiella sp. MS 92-3]
gi|424931497|ref|ZP_18349869.1| Peptide deformylase 1 [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|425074593|ref|ZP_18477696.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425083463|ref|ZP_18486560.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|425085229|ref|ZP_18488322.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|425093578|ref|ZP_18496662.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|428936960|ref|ZP_19010314.1| peptide deformylase [Klebsiella pneumoniae JHCK1]
gi|166198519|sp|A6TEU0.1|DEF_KLEP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|150957044|gb|ABR79074.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238549110|dbj|BAH65461.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|328537382|gb|EGF63631.1| peptide deformylase [Klebsiella sp. MS 92-3]
gi|405596058|gb|EKB69428.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405598664|gb|EKB71866.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405608644|gb|EKB81595.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405610553|gb|EKB83348.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|407805684|gb|EKF76935.1| Peptide deformylase 1 [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|426297259|gb|EKV59776.1| peptide deformylase [Klebsiella pneumoniae JHCK1]
Length = 169
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+AEP+ E + +++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENREEQLVLINPEMLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|352106583|ref|ZP_08961526.1| peptide deformylase [Halomonas sp. HAL1]
gi|350597626|gb|EHA13754.1| peptide deformylase [Halomonas sp. HAL1]
Length = 170
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 116/166 (69%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ +PD RL+ A + D ++K++ +M ETMY A GIGLAA+Q+D+H+++++
Sbjct: 1 MAKLPILEFPDERLRTKAAAVETVDDEVRKLVDDMLETMYDARGIGLAATQIDVHRRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S +N+Q V INP+ EK+ +EGCLS+P + ++ R +++++AL+ G +
Sbjct: 61 MDVSDDNSQPLVLINPRYTPIGDEKEPLSEGCLSIPDYYAEVPRFLKVQLNALDRNGDAY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ AEGLLA C+QHE DHL G +F++YLS K++RI+KK K K+
Sbjct: 121 ELEAEGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRILKKMQKRHKQ 166
>gi|445181041|ref|ZP_21398225.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444871864|gb|ELX96254.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
Length = 169
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRAIVPRAEKVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|389783171|ref|ZP_10194665.1| peptide deformylase [Rhodanobacter spathiphylli B39]
gi|388435109|gb|EIL92027.1| peptide deformylase [Rhodanobacter spathiphylli B39]
Length = 169
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ +PD RL+ AEP+T FD LK+ + +M ETMY A G+GLAA+QV++H+++L+
Sbjct: 1 MSVLSILEFPDPRLRTRAEPVTVFDAKLKQFVADMLETMYAANGVGLAATQVNVHQRVLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
D+S NQ V IN +I+ Q+Y EGCLS PG++ + R+ +RV A + +GK
Sbjct: 61 ADMSDERNQPLVLINARIVEKDG-SQVYQEGCLSFPGLYADVTRALAVRVQAQDADGKDI 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
I AEG LA+C+QHE+DHL GK+F++YLS
Sbjct: 120 VIEAEGPLAVCIQHELDHLEGKVFVDYLS 148
>gi|383280359|pdb|4AL2|A Chain A, Peptide Deformylase (Ni-Form) With Hydrosulfide
gi|383280360|pdb|4AL2|B Chain B, Peptide Deformylase (Ni-Form) With Hydrosulfide
gi|383280361|pdb|4AL2|C Chain C, Peptide Deformylase (Ni-Form) With Hydrosulfide
Length = 186
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 122/161 (75%), Gaps = 1/161 (0%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++
Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 DISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK FE
Sbjct: 61 DVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 160
>gi|209547667|ref|YP_002279584.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533423|gb|ACI53358.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 171
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ ++PI D +L+ + +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPILRQASKPIERVDADLQGLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKFLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|389839363|ref|YP_006341447.1| peptide deformylase [Cronobacter sakazakii ES15]
gi|429088355|ref|ZP_19151087.1| Peptide deformylase [Cronobacter universalis NCTC 9529]
gi|429102049|ref|ZP_19164023.1| Peptide deformylase [Cronobacter turicensis 564]
gi|387849839|gb|AFJ97936.1| peptide deformylase [Cronobacter sakazakii ES15]
gi|426288698|emb|CCJ90136.1| Peptide deformylase [Cronobacter turicensis 564]
gi|426508158|emb|CCK16199.1| Peptide deformylase [Cronobacter universalis NCTC 9529]
Length = 171
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+ +AEP+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ GK F
Sbjct: 61 IDVSENRDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRNGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEK 161
>gi|271502213|ref|YP_003335239.1| peptide deformylase [Dickeya dadantii Ech586]
gi|270345768|gb|ACZ78533.1| peptide deformylase [Dickeya dadantii Ech586]
Length = 169
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ A+P+ E + +++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRTQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+++ S + I EGCLS+P + R++ ++V AL+ EGK F
Sbjct: 61 IDVSEERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELDADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEK 161
>gi|430001987|emb|CCF17767.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Rhizobium sp.]
Length = 170
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++P+ + D + ++ +M ETMY A GIGLAA Q+ + ++LL+
Sbjct: 1 MTIKPLIILPDPILRQVSKPVEQVDSEITRLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60
Query: 61 LDISKNNNQ--LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+SK + Q+FINP+I+ S E+ +Y EGCLS+P + +++R + V ++ EGK
Sbjct: 61 IDVSKEDEDKAPQLFINPQIVASSDERSVYEEGCLSIPDYYAEVERPAAVTVDYIDREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K+E +IKKF K +
Sbjct: 121 QQTLQADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAR 167
>gi|92114984|ref|YP_574912.1| peptide deformylase [Chromohalobacter salexigens DSM 3043]
gi|123387341|sp|Q1QTJ5.1|DEF_CHRSD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|91798074|gb|ABE60213.1| peptide deformylase [Chromohalobacter salexigens DSM 3043]
Length = 170
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 112/163 (68%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ A P+ D +K++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAKLTILEFPDERLRTKAAPVETVDDETRKLVDDMLETMYDAQGIGLAATQVDVHRRVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + +Q +V INP+ E++ EGCLS+P + ++ R+ R+ + AL+ +G +
Sbjct: 61 MDVSDDRSQPRVLINPEYTPLGDEREPMQEGCLSIPEYYAEVPRALRVSLKALDRDGNPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+GLLA C+QHE DHL G +F++YLS K++R++KK K
Sbjct: 121 ELEADGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRVLKKMQKR 163
>gi|281306913|pdb|2W3T|A Chain A, Chloro Complex Of The Ni-Form Of E.Coli Deformylase
gi|281306914|pdb|2W3U|A Chain A, Formate Complex Of The Ni-Form Of E.Coli Deformylase
Length = 188
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 122/161 (75%), Gaps = 1/161 (0%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++
Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 DISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK FE
Sbjct: 61 DVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 160
>gi|359393982|ref|ZP_09187035.1| Peptide deformylase [Halomonas boliviensis LC1]
gi|357971229|gb|EHJ93674.1| Peptide deformylase [Halomonas boliviensis LC1]
Length = 170
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 117/166 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ +PD RL+ A + D ++K++ +M ETMY A GIGLAA+Q+D+H+++++
Sbjct: 1 MAKLPILEFPDERLRTKAAAVETVDDEVRKLVDDMLETMYDARGIGLAATQIDVHRRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S +N+Q V INP+ I EK+ +EGCLS+P + ++ R +++++AL+ G+ +
Sbjct: 61 MDVSDDNSQPLVLINPRYIPIGDEKEPLSEGCLSIPEYYAEVPRFLKVQLNALDRNGEAY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ AEGLLA C+QHE DHL G +F++YLS K+ RI+KK K K+
Sbjct: 121 ELEAEGLLAHCIQHEYDHLEGVLFVDYLSPLKRNRILKKMQKRHKQ 166
>gi|399908757|ref|ZP_10777309.1| peptide deformylase [Halomonas sp. KM-1]
Length = 169
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 117/165 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ A P+ D +++++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAKLTILEFPDERLRTRAAPVEAVDDEVRRLVDDMLETMYDASGIGLAATQVDVHRRVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + V INP+ +E+++ +EGCLS+P + ++ R+ ++R+ AL+ +GK +
Sbjct: 61 MDVSEERSHPLVLINPEYTPIGEERELMSEGCLSIPEYYAEVPRALKVRLKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLA C+QHE DHL G +F++YLS K++R++KK K K
Sbjct: 121 ELEADGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRVLKKMQKRHK 165
>gi|395231845|ref|ZP_10410122.1| peptide deformylase [Citrobacter sp. A1]
gi|421847962|ref|ZP_16281088.1| peptide deformylase [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|424734280|ref|ZP_18162822.1| protein smf [Citrobacter sp. L17]
gi|394714308|gb|EJF20287.1| peptide deformylase [Citrobacter sp. A1]
gi|411770647|gb|EKS54409.1| peptide deformylase [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|422892094|gb|EKU31971.1| protein smf [Citrobacter sp. L17]
gi|455644206|gb|EMF23311.1| peptide deformylase [Citrobacter freundii GTC 09479]
Length = 169
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ E I EGCLS+P + R++++++ AL+ GK F
Sbjct: 61 IDVSENRDEQLVLINPELLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|255020222|ref|ZP_05292291.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
gi|340780758|ref|YP_004747365.1| peptide deformylase [Acidithiobacillus caldus SM-1]
gi|254970364|gb|EET27857.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
gi|340554910|gb|AEK56664.1| Peptide deformylase [Acidithiobacillus caldus SM-1]
Length = 168
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 119/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD+RLK+ A PI D +++ + +M ETMY A GIGLAA QV ++L++
Sbjct: 1 MALLKIVEYPDVRLKQEAAPIARIDRDIEALADDMAETMYAAPGIGLAAIQVAAPQRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+L +NP+II S E+++ EGCLS+PG+ ++R++R++V AL++ GK
Sbjct: 61 VDVSEARNELLTLVNPEIIESSGEEEM-QEGCLSVPGVLETVRRAERVKVRALDLRGKTL 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLA+CLQHEIDHLNG +F+++LS K+ I +K K ++
Sbjct: 120 ELEADGLLAVCLQHEIDHLNGTLFVDHLSRLKQNLIRRKAEKRLR 164
>gi|182677492|ref|YP_001831638.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
gi|182633375|gb|ACB94149.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
Length = 193
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 116/177 (65%), Gaps = 11/177 (6%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD L+++ +P+ + D +++++ +M ETMY A GIGLAASQ+ + K++++
Sbjct: 1 MALRSIITIPDPLLRRVCDPVADVDSEIRRLMDDMLETMYDAPGIGLAASQIAVMKRVIV 60
Query: 61 LDISKNNN-----------QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIR 109
+D++K Q NP+I+W S+E Y EGCLS+P + ++ R R+R
Sbjct: 61 MDVAKRRKGEDGAEADVAPQPLALANPEILWASEELSTYEEGCLSIPDYYEEVVRPARVR 120
Query: 110 VHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
V L+ +G+ E+ A+G+LA C+QHEIDHLNG +FI+++S K+ERI+KKF K K+
Sbjct: 121 VGYLDRQGQRQELEADGILATCVQHEIDHLNGVLFIDHISRLKRERIVKKFSKAAKR 177
>gi|410620543|ref|ZP_11331411.1| peptide deformylase [Glaciecola polaris LMG 21857]
gi|410159903|dbj|GAC35549.1| peptide deformylase [Glaciecola polaris LMG 21857]
Length = 169
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ IA+P+ D +K ++ +M ETM GIGLAA+QVD+HK++++
Sbjct: 1 MAILDVLRFPDERLRTIAKPVETIDSAIKTLVSDMLETMKDENGIGLAATQVDVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + QVFINP I + + I EGCLS+P + K++R+++I V AL+ G F
Sbjct: 61 IDVSEKQDTPQVFINPDI-THMEGTTISEEGCLSVPNNYAKVERAEKITVKALDENGDSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI K K +
Sbjct: 120 TLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEAR 164
>gi|333929432|ref|YP_004503011.1| peptide deformylase [Serratia sp. AS12]
gi|333934385|ref|YP_004507963.1| peptide deformylase [Serratia plymuthica AS9]
gi|386331255|ref|YP_006027425.1| Peptide deformylase [Serratia sp. AS13]
gi|333475992|gb|AEF47702.1| Peptide deformylase [Serratia plymuthica AS9]
gi|333493492|gb|AEF52654.1| Peptide deformylase [Serratia sp. AS12]
gi|333963588|gb|AEG30361.1| Peptide deformylase [Serratia sp. AS13]
Length = 169
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 120/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+K+A P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHYPDERLRKVAAPVKEVNATIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R+ +++ AL+ +G F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAANVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|422788826|ref|ZP_16841561.1| peptide deformylase [Escherichia coli H489]
gi|323959563|gb|EGB55216.1| peptide deformylase [Escherichia coli H489]
Length = 169
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ + E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKNGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|395783639|ref|ZP_10463488.1| peptide deformylase [Bartonella melophagi K-2C]
gi|395425761|gb|EJF91921.1| peptide deformylase [Bartonella melophagi K-2C]
Length = 174
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 117/164 (71%), Gaps = 4/164 (2%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
++ PD L+K+++PI D+ ++K+ +M ETMYHA GIGLAA QV + ++L++DI++
Sbjct: 4 LVTLPDPILRKVSKPIEHIDLAIQKLADDMLETMYHAQGIGLAAIQVGVPLRMLVIDIAE 63
Query: 66 NN---NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
NN N L V INP+I+W S E+ IY EGCLS+P + +++R KR+RV + EGK EI
Sbjct: 64 NNTPKNPL-VVINPEILWLSDERNIYKEGCLSIPEYYAQVERPKRLRVRYSDREGKQTEI 122
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLA CLQHEIDHLNG +FI+++S K++ +I+K K K+
Sbjct: 123 EADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKLKKRAKE 166
>gi|301632277|ref|XP_002945217.1| PREDICTED: peptide deformylase 1-like [Xenopus (Silurana)
tropicalis]
Length = 217
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 102/140 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL ++A+P+ D ++ ++ +M TMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAILPILCYPDPRLHQVAQPVRAVDARIQSLVSDMLATMYDAQGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ NQ V INP+I+W S EK + +EGCLS+PGI++ ++R + V AL+ +G
Sbjct: 61 IDTSEERNQPLVLINPEIVWASAEKVVRDEGCLSVPGIYDGVERCSAVHVRALDEKGAAR 120
Query: 121 EIIAEGLLAICLQHEIDHLN 140
I AEGLLA+C+QHE+DHL
Sbjct: 121 VIQAEGLLAVCMQHEMDHLT 140
>gi|294638020|ref|ZP_06716280.1| peptide deformylase [Edwardsiella tarda ATCC 23685]
gi|451967543|ref|ZP_21920782.1| peptide deformylase [Edwardsiella tarda NBRC 105688]
gi|291088812|gb|EFE21373.1| peptide deformylase [Edwardsiella tarda ATCC 23685]
gi|451313642|dbj|GAC66144.1| peptide deformylase [Edwardsiella tarda NBRC 105688]
Length = 171
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++++PD RL+ IA+P+ E +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHFPDERLRTIAKPVNEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+++ E I EGCLS+P + R++ I V AL+ +GK F
Sbjct: 61 IDISENRDQRLVLINPELLQKGGETGI-EEGCLSVPEQRALVPRAETITVRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEK 161
>gi|300718672|ref|YP_003743475.1| peptide deformylase [Erwinia billingiae Eb661]
gi|299064508|emb|CAX61628.1| Peptide deformylase [Erwinia billingiae Eb661]
Length = 174
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ +A+P+ E + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ S E I EGCLS+P + R++++++ AL+ EG +
Sbjct: 61 IDVSENREERLVLINPEMLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGNSY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEK 161
>gi|119773185|ref|YP_925925.1| peptide deformylase [Shewanella amazonensis SB2B]
gi|119765685|gb|ABL98255.1| peptide deformylase [Shewanella amazonensis SB2B]
Length = 167
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ +A+P+TEF L+ I +M ETMY GIGLAA+QVD H++L++
Sbjct: 1 MPLLKVLRFPDERLRTVAKPVTEFTPALQSQIDDMFETMYEENGIGLAATQVDFHQRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +VFINP+I+ S + EGCLS+PG++ K+ R++ I V AL+ G F
Sbjct: 61 MDLQDEVERPKVFINPEIVAKSGDF-CNEEGCLSVPGVYAKVDRAELITVKALDRNGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GL AICLQHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 120 TVEADGLFAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKAAR 164
>gi|293393278|ref|ZP_06637592.1| peptide deformylase [Serratia odorifera DSM 4582]
gi|291424188|gb|EFE97403.1| peptide deformylase [Serratia odorifera DSM 4582]
Length = 169
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+K+A P+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+++ S E I EGCLS+P + R++++++ AL+ G F
Sbjct: 61 IDVSETRDQRLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDYNGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELAADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAK 164
>gi|4699740|pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni2+ Containing Form,
Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
gi|4699741|pdb|1ICJ|B Chain B, Pdf Protein Is Crystallized As Ni2+ Containing Form,
Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
gi|4699742|pdb|1ICJ|C Chain C, Pdf Protein Is Crystallized As Ni2+ Containing Form,
Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
gi|5821888|pdb|1BS4|A Chain A, Peptide Deformylase As Zn2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
gi|5821889|pdb|1BS4|B Chain B, Peptide Deformylase As Zn2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
gi|5821890|pdb|1BS4|C Chain C, Peptide Deformylase As Zn2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
gi|5821891|pdb|1BS5|A Chain A, Peptide Deformylase As Zn2+ Containing Form
gi|5821892|pdb|1BS5|B Chain B, Peptide Deformylase As Zn2+ Containing Form
gi|5821893|pdb|1BS5|C Chain C, Peptide Deformylase As Zn2+ Containing Form
gi|5821894|pdb|1BS6|A Chain A, Peptide Deformylase As Ni2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
gi|5821895|pdb|1BS6|B Chain B, Peptide Deformylase As Ni2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
gi|5821896|pdb|1BS6|C Chain C, Peptide Deformylase As Ni2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
gi|5821900|pdb|1BS7|A Chain A, Peptide Deformylase As Ni2+ Containing Form
gi|5821901|pdb|1BS7|B Chain B, Peptide Deformylase As Ni2+ Containing Form
gi|5821902|pdb|1BS7|C Chain C, Peptide Deformylase As Ni2+ Containing Form
gi|5821903|pdb|1BS8|A Chain A, Peptide Deformylase As Zn2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
gi|5821904|pdb|1BS8|B Chain B, Peptide Deformylase As Zn2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
gi|5821905|pdb|1BS8|C Chain C, Peptide Deformylase As Zn2+ Containing Form In Complex
With Tripeptide Met-Ala-Ser
gi|5821915|pdb|1BSZ|A Chain A, Peptide Deformylase As Fe2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
gi|5821916|pdb|1BSZ|B Chain B, Peptide Deformylase As Fe2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
gi|5821917|pdb|1BSZ|C Chain C, Peptide Deformylase As Fe2+ Containing Form (Native) In
Complex With Inhibitor Polyethylene Glycol
gi|7767088|pdb|1BSJ|A Chain A, Cobalt Deformylase Inhibitor Complex From E.Coli
gi|7767089|pdb|1BSK|A Chain A, Zinc Deformylase Inhibitor Complex From E.Coli
gi|16975207|pdb|1G27|A Chain A, Crystal Structure Of E.Coli Polypeptide Deformylase
Complexed With The Inhibitor Bb-3497
gi|16975208|pdb|1G27|B Chain B, Crystal Structure Of E.Coli Polypeptide Deformylase
Complexed With The Inhibitor Bb-3497
gi|16975209|pdb|1G27|C Chain C, Crystal Structure Of E.Coli Polypeptide Deformylase
Complexed With The Inhibitor Bb-3497
gi|16975210|pdb|1G2A|A Chain A, The Crystal Structure Of E.Coli Peptide Deformylase
Complexed With Actinonin
gi|16975211|pdb|1G2A|B Chain B, The Crystal Structure Of E.Coli Peptide Deformylase
Complexed With Actinonin
gi|16975212|pdb|1G2A|C Chain C, The Crystal Structure Of E.Coli Peptide Deformylase
Complexed With Actinonin
gi|22219291|pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide Deformylase Complexed
With Antibiotic Actinonin
gi|22219292|pdb|1LRU|B Chain B, Crystal Structure Of E.Coli Peptide Deformylase Complexed
With Antibiotic Actinonin
gi|22219293|pdb|1LRU|C Chain C, Crystal Structure Of E.Coli Peptide Deformylase Complexed
With Antibiotic Actinonin
gi|62738424|pdb|1XEM|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
Zinc- Peptide Deformylase Bound To Formate
gi|62738425|pdb|1XEN|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
Iron- Peptide Deformylase Bound To Formate
gi|62738426|pdb|1XEO|A Chain A, High Resolution Crystals Structure Of Cobalt- Peptide
Deformylase Bound To Formate
gi|75766233|pdb|2AI8|A Chain A, E.Coli Polypeptide Deformylase Complexed With Sb-485343
gi|75766234|pdb|2AI8|B Chain B, E.Coli Polypeptide Deformylase Complexed With Sb-485343
gi|75766235|pdb|2AI8|C Chain C, E.Coli Polypeptide Deformylase Complexed With Sb-485343
Length = 168
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 122/161 (75%), Gaps = 1/161 (0%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++
Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 DISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK FE
Sbjct: 61 DVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 160
>gi|398800927|ref|ZP_10560187.1| peptide deformylase [Pantoea sp. GM01]
gi|398093744|gb|EJL84119.1| peptide deformylase [Pantoea sp. GM01]
Length = 170
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+KIA P+ + ++++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDDRLRKIAAPVATVNADVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++ ++V A + +G F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRAFVPRAEWVKVRAQDRDGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLAIC+QHEIDHL+GK+FI+YLS K++RI +K K
Sbjct: 120 ELETDGLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKQKLEK 161
>gi|375267070|ref|YP_005024513.1| peptide deformylase [Vibrio sp. EJY3]
gi|369842390|gb|AEX23534.1| peptide deformylase [Vibrio sp. EJY3]
Length = 172
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 114/162 (70%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ E ++KI+ +M ETMY GIGLAA+QVDIHK++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK F
Sbjct: 61 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 TFDADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQEKLAK 161
>gi|218513698|ref|ZP_03510538.1| peptide deformylase [Rhizobium etli 8C-3]
Length = 171
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D L+++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPFLRQLSKPIERVDAELQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ Q QVFINP+I+ S E+ +Y EGCLS+P + +++R + V L+ GK
Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K+E +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167
>gi|152977798|ref|YP_001343427.1| peptide deformylase [Actinobacillus succinogenes 130Z]
gi|150839521|gb|ABR73492.1| peptide deformylase [Actinobacillus succinogenes 130Z]
Length = 183
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ YPD RLK +A P+TEF+ L+ I +M +TMY GIGLAA+QVD+HK+++
Sbjct: 13 MALLNVLIYPDERLKTVAAPVTEFNDELQTFIDDMFDTMYQEEGIGLAATQVDVHKRVIT 72
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS N+ V INP+++ E I EGCLSLPG + R ++I V ALN G+ F
Sbjct: 73 IDISGEKNEQLVLINPELLDSEGETGI-EEGCLSLPGFRGFVPRKEKITVKALNRYGEEF 131
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHE+DHLNG +F +YLS K+ R+ +K +K
Sbjct: 132 TLHADGLLAICIQHEMDHLNGIVFADYLSPLKRNRMKEKLVK 173
>gi|420240715|ref|ZP_14744917.1| peptide deformylase [Rhizobium sp. CF080]
gi|398075470|gb|EJL66583.1| peptide deformylase [Rhizobium sp. CF080]
Length = 171
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++PI D L K+ +M ETMY A GIGLAA Q+ + ++LL+
Sbjct: 1 MTIKPLIILPDPILRQVSKPIERVDAELLKLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+++ Q QVFINP+I+ S E +Y EGCLS+P + +++R + V L +GK
Sbjct: 61 VDVAREGEEKQPQVFINPEIVRSSDEIAVYEEGCLSIPEYYAEVERPATVSVRHLGRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ + A+GLLA CLQHEIDHLNG +FI+++S K+E +IKKF K K
Sbjct: 121 EYVVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAK 167
>gi|323135726|ref|ZP_08070809.1| peptide deformylase [Methylocystis sp. ATCC 49242]
gi|322398817|gb|EFY01336.1| peptide deformylase [Methylocystis sp. ATCC 49242]
Length = 188
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPII PD RL+K++EP+ D + +++ +M ETMY A GIGLAA QV + K++++
Sbjct: 1 MALLPIITLPDPRLRKVSEPVERIDAEIHRLLDDMLETMYAAPGIGLAAIQVAVAKRIVV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DI K ++ INP+IIW S+E Y EGCLS+P F+ +KR ++V L+ G+
Sbjct: 61 VDIGKTEDERSPLFLINPEIIWASEELSSYQEGCLSVPDYFDDVKRPAMVKVRHLDRHGQ 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E A GLLA +QHE++HL G +FI+ LS K+ER++KKF K +
Sbjct: 121 TQEFDAVGLLATVVQHELEHLEGGLFIDNLSRLKRERVVKKFSKAAR 167
>gi|378980995|ref|YP_005229136.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|419976859|ref|ZP_14492246.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419982565|ref|ZP_14497820.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419988193|ref|ZP_14503294.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|419993960|ref|ZP_14508888.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419999774|ref|ZP_14514540.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420005617|ref|ZP_14520233.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420011348|ref|ZP_14525802.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420017349|ref|ZP_14531624.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420022824|ref|ZP_14536981.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|420028604|ref|ZP_14542575.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420034492|ref|ZP_14548276.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420040096|ref|ZP_14553713.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420045879|ref|ZP_14559336.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420051696|ref|ZP_14564974.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420057362|ref|ZP_14570501.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420062802|ref|ZP_14575763.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420068814|ref|ZP_14581583.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420074856|ref|ZP_14587441.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420080300|ref|ZP_14592727.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420085443|ref|ZP_14597667.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|428149694|ref|ZP_18997508.1| Peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428943311|ref|ZP_19016224.1| peptide deformylase [Klebsiella pneumoniae VA360]
gi|364520406|gb|AEW63534.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397339580|gb|EJJ32820.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397340041|gb|EJJ33258.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397341673|gb|EJJ34848.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397357341|gb|EJJ50103.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397357357|gb|EJJ50118.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397360908|gb|EJJ53578.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397373706|gb|EJJ66102.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397376066|gb|EJJ68336.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397382794|gb|EJJ74949.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397391377|gb|EJJ83232.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397392513|gb|EJJ84305.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397400473|gb|EJJ92115.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397408718|gb|EJK00069.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397408825|gb|EJK00170.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397419613|gb|EJK10753.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397425862|gb|EJK16723.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397427178|gb|EJK17963.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397432466|gb|EJK23125.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397441935|gb|EJK32300.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397449159|gb|EJK39305.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|426296990|gb|EKV59540.1| peptide deformylase [Klebsiella pneumoniae VA360]
gi|427540454|emb|CCM93646.1| Peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
Length = 169
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+AEP+ E + +++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ E I EGCLS+P + R++++++ AL +GK F
Sbjct: 61 IDVSENREEQLVLINPEMLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALERDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|392552735|ref|ZP_10299872.1| peptide deformylase [Pseudoalteromonas spongiae UST010723-006]
Length = 170
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+ + + + + KKI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAILEVLRFPDERLRTVAQEVAQINDDTKKIVSDMLETMYDENGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ V INP+II K I EGCLS+PG + K+ R++ + + A + G +
Sbjct: 61 IDVSEEGNEPLVLINPEIIKKDGSK-ISEEGCLSVPGSYAKVDRAETVTIKAFDENGNQY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E A+GLLA+C+QHE+DHL G +FI+YLS K++RI KK K K
Sbjct: 120 EKDADGLLAVCIQHELDHLKGVLFIDYLSPLKRQRIRKKLEKEAK 164
>gi|157959861|ref|YP_001499895.1| peptide deformylase [Shewanella pealeana ATCC 700345]
gi|157844861|gb|ABV85360.1| peptide deformylase [Shewanella pealeana ATCC 700345]
Length = 199
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 118/166 (71%), Gaps = 3/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL ++ +PD RL+ +A+PITEF+ L+ I +M ETMY GIGLAA+QVD H QL++
Sbjct: 30 MSLLKVLRFPDERLRTVAQPITEFNPALQTQIDDMFETMYEEKGIGLAATQVDYHHQLIV 89
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNE-GCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+D+ + +VFIN +I +K NE GCLS+PG++ K+ R++ + + AL+ +GK
Sbjct: 90 MDLQDEVERPKVFINLEIT--AKSGDFCNEEGCLSVPGVYAKVDRAEFVTIKALDRDGKE 147
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
F + A+GL AICLQHE+DHL+GK+F++YLS K++RI +K K +
Sbjct: 148 FTLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAAR 193
>gi|418827009|ref|ZP_13382176.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
gi|392802474|gb|EJA58687.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
Length = 188
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|188535243|ref|YP_001909040.1| peptide deformylase [Erwinia tasmaniensis Et1/99]
gi|238692005|sp|B2VK93.1|DEF_ERWT9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|188030285|emb|CAO98174.1| Peptide deformylase [Erwinia tasmaniensis Et1/99]
Length = 169
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ +A+P+ E + N+++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ V I+P+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSEDRDERLVLIDPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEK 161
>gi|157830814|pdb|1DFF|A Chain A, Peptide Deformylase
Length = 164
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 122/161 (75%), Gaps = 1/161 (0%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++
Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 DISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK FE
Sbjct: 61 DVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 160
>gi|418294659|ref|ZP_12906547.1| peptide deformylase, partial [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379066030|gb|EHY78773.1| peptide deformylase, partial [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 145
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 109/138 (78%)
Query: 25 DINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIWYSKE 84
D ++++I +M ETMY A GIGLAA+QV++HK+++++D+S++ ++ +VFINP++ + E
Sbjct: 2 DDGIRQLIDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPRVFINPELESLTDE 61
Query: 85 KQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIF 144
Y EGCLS+PG + + R +++R+ AL+ +GK +E++AEGLLA+C+QHE DHLNGK+F
Sbjct: 62 MDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPYEMVAEGLLAVCIQHECDHLNGKLF 121
Query: 145 IEYLSNFKKERIIKKFLK 162
++YLS+ K++RI KK K
Sbjct: 122 VDYLSSLKRDRIKKKLEK 139
>gi|383188352|ref|YP_005198480.1| peptide deformylase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371586610|gb|AEX50340.1| peptide deformylase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 170
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+++PD RL+ A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQILHFPDERLRITAKPVKEVNAEIQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R+ +++V AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPDQRALVPRAAKVKVRALDRDGKTF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKMAK 164
>gi|319407942|emb|CBI81596.1| polypeptide deformylase [Bartonella schoenbuchensis R1]
Length = 174
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 118/164 (71%), Gaps = 4/164 (2%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
++ PD L+++++P+ + D+ ++K+ +M ETMYHA GIGLAA QV + ++L++DI++
Sbjct: 4 LVTLPDPILREVSKPVEQIDLAIQKLADDMLETMYHAQGIGLAAIQVGVPLRMLVIDIAE 63
Query: 66 NN---NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
NN N L V INP+I+W S E+ IY EGCLS+P + +++R KR+RV + EGK EI
Sbjct: 64 NNTPKNPL-VVINPEILWLSDERNIYKEGCLSIPEYYAQVERPKRLRVRYSDREGKQTEI 122
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLA CLQHEIDHLNG +FI+++S K++ +I+K K K+
Sbjct: 123 EADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKLKKRAKE 166
>gi|237806929|ref|YP_002891369.1| peptide deformylase [Tolumonas auensis DSM 9187]
gi|259645187|sp|C4L7Y4.1|DEF_TOLAT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|237499190|gb|ACQ91783.1| peptide deformylase [Tolumonas auensis DSM 9187]
Length = 167
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 116/162 (71%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+KIA PI + +L+ II +M ETMY GIGLAA+QV+IHK+L++
Sbjct: 1 MATLDVLRFPDERLRKIATPIEKITSDLEHIIEDMFETMYLEEGIGLAATQVNIHKRLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+N +Q VFINP++I E I EGCLS+P + R++ I+V AL+ G+ F
Sbjct: 61 VDTSENRDQPMVFINPELIEKRGETGI-EEGCLSVPECRAFVPRAEWIKVRALDRHGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI A+GLLAICLQHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 EIEADGLLAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEK 161
>gi|227328917|ref|ZP_03832941.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 170
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ A+P+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP++I S + I EGCLS+P + R++ ++V AL+ EGK F
Sbjct: 61 IDVSEERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A LLAIC+QHE+DHL GK+FI+YLS K++RI +K K K+
Sbjct: 120 ELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165
>gi|170718226|ref|YP_001785248.1| peptide deformylase [Haemophilus somnus 2336]
gi|189083072|sp|B0UWZ5.1|DEF_HAES2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|168826355|gb|ACA31726.1| peptide deformylase [Haemophilus somnus 2336]
Length = 170
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ YPD RLK +AEP++ FD L+ I NM ETMYH GIGLAA+QV++HK+++
Sbjct: 1 MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI V INPKI+ E I EGCLSLPG+ + R + ++V A N +G+ F
Sbjct: 61 IDIEGTKENQIVLINPKILESFGETGI-EEGCLSLPGLRGFVPRKETVKVKAQNRQGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F ++LS K++R+ +K LK
Sbjct: 120 MLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLK 161
>gi|163751680|ref|ZP_02158899.1| polypeptide deformylase [Shewanella benthica KT99]
gi|161328419|gb|EDP99575.1| polypeptide deformylase [Shewanella benthica KT99]
Length = 170
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL I+ +PD RL+ +A+P+TEF+ L+ I NM ETMY G+GLAA+QVD H+QL+I
Sbjct: 1 MSLLKILRFPDERLRTLAKPVTEFNTGLQTQINNMFETMYEDKGVGLAATQVDYHRQLII 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +VFIN +I+ S EGCLS+PG + I+R++ + + AL+ +G F
Sbjct: 61 MDLQDEEERPKVFINLEIVASSGHFS-NEEGCLSVPGFYADIERAEHVTIKALDRDGIEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GL AICLQHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 120 TLDADGLFAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAAR 164
>gi|409435828|ref|ZP_11263036.1| peptide deformylase [Rhizobium mesoamericanum STM3625]
gi|408752586|emb|CCM74183.1| peptide deformylase [Rhizobium mesoamericanum STM3625]
Length = 172
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++I++PI D + +++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPLLRQISKPIERVDADFQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ + Q VF+NP+I+ S E+ +Y EGCLS+P + +++R + V L+ +GK
Sbjct: 61 IDVSREGEEKQPLVFVNPEIVVSSDERSVYEEGCLSIPDYYAEVERPATVTVKYLDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K++ +IKKF K K
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAAK 167
>gi|260599606|ref|YP_003212177.1| peptide deformylase [Cronobacter turicensis z3032]
gi|260218783|emb|CBA34131.1| Peptide deformylase [Cronobacter turicensis z3032]
Length = 177
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+ +AEP+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 7 MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 66
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ GK F
Sbjct: 67 IDVSENRDERLVLINPELLEQSGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRNGKSF 125
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 126 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEK 167
>gi|338999392|ref|ZP_08638039.1| peptide deformylase [Halomonas sp. TD01]
gi|338763721|gb|EGP18706.1| peptide deformylase [Halomonas sp. TD01]
Length = 170
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 115/165 (69%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ +PD RL+ A P+ D +++++ +M ETMY A GIGLAA+QVD+H ++++
Sbjct: 1 MAKLPILEFPDERLRTKAAPVETVDDEVRQLVDDMLETMYDARGIGLAATQVDVHSRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S +N+Q V INP+ EK+ +EGCLS+P + ++ R ++ ++AL+ G+ +
Sbjct: 61 MDVSDDNSQPLVLINPRYEPIGDEKEPLSEGCLSIPEYYAEVPRYLKVTLNALDRSGEPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLA C+QHE DHL G +F++YLS K++R++KK K K
Sbjct: 121 ELEADGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRVMKKMQKRHK 165
>gi|336313697|ref|ZP_08568636.1| peptide deformylase [Shewanella sp. HN-41]
gi|335862718|gb|EGM67910.1| peptide deformylase [Shewanella sp. HN-41]
Length = 170
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ A+PITEF+ L+ I +M ETMY GIGLAA+QVD HKQL++
Sbjct: 1 MALLKVLRFPDERLRTQAKPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + + +VFINP+II S + EGCLS+PGI+ K+ R++ + V AL+ G F
Sbjct: 61 IDLQDDVERSKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A L AIC+QHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 120 TVEANELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAR 164
>gi|259909966|ref|YP_002650322.1| peptide deformylase [Erwinia pyrifoliae Ep1/96]
gi|385786292|ref|YP_005817401.1| peptide deformylase [Erwinia sp. Ejp617]
gi|387872966|ref|YP_005804353.1| peptide deformylase [Erwinia pyrifoliae DSM 12163]
gi|224965588|emb|CAX57120.1| Peptide deformylase [Erwinia pyrifoliae Ep1/96]
gi|283480066|emb|CAY75982.1| peptide deformylase [Erwinia pyrifoliae DSM 12163]
gi|310765564|gb|ADP10514.1| peptide deformylase [Erwinia sp. Ejp617]
Length = 169
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ +A+P+ E + N+++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +G
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNSV 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEK 161
>gi|410088705|ref|ZP_11285394.1| Peptide deformylase [Morganella morganii SC01]
gi|421494911|ref|ZP_15942248.1| DEF [Morganella morganii subsp. morganii KT]
gi|455737430|ref|YP_007503696.1| Peptide deformylase [Morganella morganii subsp. morganii KT]
gi|400190800|gb|EJO23959.1| DEF [Morganella morganii subsp. morganii KT]
gi|409764840|gb|EKN48968.1| Peptide deformylase [Morganella morganii SC01]
gi|455418993|gb|AGG29323.1| Peptide deformylase [Morganella morganii subsp. morganii KT]
Length = 169
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL +++YPD RL+KIA+P+ + D ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MALLTVLHYPDERLRKIAKPVEKVDAGIQKIVDDMFETMYDEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ V INP+++ S E I EGCLS+P + R++ +++ AL+ G+ F
Sbjct: 61 IDVSEERNERLVLINPELLEKSGEAGI-EEGCLSIPEQRAFVPRAEHVKIRALDYNGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELETGDLLAICIQHEMDHLEGKLFVDYLSAMKRQRIRQKVEK 161
>gi|16762876|ref|NP_458493.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29144363|ref|NP_807705.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|213161458|ref|ZP_03347168.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213418738|ref|ZP_03351804.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
gi|213584235|ref|ZP_03366061.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-0664]
gi|213650879|ref|ZP_03380932.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
gi|289824191|ref|ZP_06543786.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
gi|378962280|ref|YP_005219766.1| peptide deformylase 1 [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|23396544|sp|Q8Z1W9.1|DEF_SALTI RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|25303718|pir||AB1010 formylmethionine deformylase (EC 3.5.1.31) - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16505183|emb|CAD09179.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29140001|gb|AAO71565.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|374356152|gb|AEZ47913.1| Peptide deformylase 1 [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
Length = 169
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ G F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|168234463|ref|ZP_02659521.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|194472649|ref|ZP_03078633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194459013|gb|EDX47852.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205331619|gb|EDZ18383.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
Length = 169
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEANGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|418774075|ref|ZP_13330046.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418802082|ref|ZP_13357713.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|392751577|gb|EJA08525.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392778585|gb|EJA35257.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
Length = 169
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSENRDERLVLINPELQEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|240849749|ref|YP_002971137.1| polypeptide deformylase [Bartonella grahamii as4aup]
gi|240266872|gb|ACS50460.1| polypeptide deformylase [Bartonella grahamii as4aup]
Length = 178
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 118/170 (69%), Gaps = 4/170 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + ++ PD L+++++P+ + D L+K+ +M ETMY+A GIGLAA Q+ I ++L+
Sbjct: 1 MPMRSLVTLPDPILREVSKPVDQVDSALQKLADDMLETMYNAKGIGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ----VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIE 116
+D+S N+ + V INP+I+W S E+ IY EGCLS+P F +++R KR+ V N E
Sbjct: 61 IDVSGNSEDERKKPFVIINPEILWLSDERNIYKEGCLSIPDYFAEVERPKRLCVRYQNRE 120
Query: 117 GKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
GK EI A+ LLA CLQHEIDHL+G++FI+Y+S K++ +I+KF K K+
Sbjct: 121 GKQTEIEADDLLATCLQHEIDHLDGRLFIDYISKIKRDMVIRKFKKRAKE 170
>gi|50122919|ref|YP_052086.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
gi|81693081|sp|Q6D002.1|DEF_ERWCT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|49613445|emb|CAG76896.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
Length = 169
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ A+P+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP++I S + I EGCLS+P + R++ ++V AL+ EGK F
Sbjct: 61 IDVSEERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A LLAIC+QHE+DHL GK+FI+YLS K++RI +K K K+
Sbjct: 120 ELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165
>gi|146291135|ref|YP_001181559.1| peptide deformylase [Shewanella putrefaciens CN-32]
gi|145562825|gb|ABP73760.1| peptide deformylase [Shewanella putrefaciens CN-32]
Length = 170
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ A+PITEFD L+ I NM ETMY GIGLAA+QVD HKQL++
Sbjct: 1 MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +VFINP+II S + EGCLS+PGI+ K+ R++ + V AL+ G F
Sbjct: 61 MDLQDEVERPKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGCEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ L AIC+QHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 120 IVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAR 164
>gi|222084707|ref|YP_002543236.1| peptide deformylase [Agrobacterium radiobacter K84]
gi|398379645|ref|ZP_10537765.1| peptide deformylase [Rhizobium sp. AP16]
gi|221722155|gb|ACM25311.1| peptide deformylase [Agrobacterium radiobacter K84]
gi|397722277|gb|EJK82821.1| peptide deformylase [Rhizobium sp. AP16]
Length = 171
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ ++PI D + ++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPLLRQASKPIERVDTEILRLADDMLETMYDAPGIGLAAVQIGVARRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+++ Q VFINP+++ S E+ +Y EGCLS+P + +++R R+ V ++ +GK
Sbjct: 61 IDVAREGEDKQPLVFINPEVVASSDERSVYEEGCLSIPDYYAEVERPARVTVKHIDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
I A+GLLA CLQHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQLIEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|37528512|ref|NP_931857.1| peptide deformylase [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|39930823|sp|Q7MYI2.1|DEF_PHOLL RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|36787950|emb|CAE17067.1| polypeptide deformylase (PDF) (formylmethionine deformylase)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 170
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+ IA P+ D +++II +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHYPDERLRTIATPVETVDAEIRRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ V INP+++ S E I EGCLS+P + R++++++ AL+ G+ F
Sbjct: 61 IDVSETRNERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIKALDYNGRPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELQADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEK 161
>gi|365140594|ref|ZP_09346604.1| peptide deformylase [Klebsiella sp. 4_1_44FAA]
gi|386036819|ref|YP_005956732.1| peptide deformylase [Klebsiella pneumoniae KCTC 2242]
gi|419764948|ref|ZP_14291187.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|424832656|ref|ZP_18257384.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|449053759|ref|ZP_21732590.1| peptide deformylase [Klebsiella pneumoniae hvKP1]
gi|339763947|gb|AEK00168.1| peptide deformylase [Klebsiella pneumoniae KCTC 2242]
gi|363653449|gb|EHL92415.1| peptide deformylase [Klebsiella sp. 4_1_44FAA]
gi|397742076|gb|EJK89295.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|414710099|emb|CCN31803.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|448875564|gb|EMB10577.1| peptide deformylase [Klebsiella pneumoniae hvKP1]
Length = 169
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+AEP+ E + +++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ E I EGCLS+P + R++++++ AL+ GK F
Sbjct: 61 IDVSENREEQLVLINPEMLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|315125137|ref|YP_004067140.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
SM9913]
gi|315013650|gb|ADT66988.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
SM9913]
Length = 168
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ IA+ +T D +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MARLEVLRFPDERLRTIAKEVTVVDDQVREIVKDMLETMYDENGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ V INP+II + EGCLS+P + K+ R++ + V ALN EGK F
Sbjct: 61 IDVSEERNEPLVLINPQIIKKDG-STVSEEGCLSVPHSYAKVDRAETVTVAALNEEGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 ILDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164
>gi|322831106|ref|YP_004211133.1| peptide deformylase [Rahnella sp. Y9602]
gi|384256274|ref|YP_005400208.1| peptide deformylase [Rahnella aquatilis HX2]
gi|321166307|gb|ADW72006.1| peptide deformylase [Rahnella sp. Y9602]
gi|380752250|gb|AFE56641.1| peptide deformylase [Rahnella aquatilis HX2]
Length = 170
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+++PD RL+ A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQILHFPDERLRITAKPVKEVNAEIQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPDQRALVPRAEKVKIRALDRDGKTF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKMAK 164
>gi|335424666|ref|ZP_08553670.1| peptide deformylase [Salinisphaera shabanensis E1L3A]
gi|334888097|gb|EGM26403.1| peptide deformylase [Salinisphaera shabanensis E1L3A]
Length = 173
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+++PD RL++ EP+T FD L + I +M ETMY A G+GLAA+QV +++ +
Sbjct: 1 MAILEILHFPDPRLRERTEPVTVFDETLSRFIDDMFETMYDAPGVGLAATQVGDTRRVAV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S++ N+ V NP+I+W ++ + +EGCLS+P ++K+KR R+R A + +G+ +
Sbjct: 61 MDCSEDRNERIVMCNPEILW-REDLETVDEGCLSVPDHYDKVKRYARVRFAAQDRDGERY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ AEGLLA C+QHE+ HL+G ++I+ LS K+ERI +K K ++
Sbjct: 120 EMDAEGLLAQCVQHELAHLDGGLYIDQLSRLKRERIRRKLAKAARQ 165
>gi|253690150|ref|YP_003019340.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|259645184|sp|C6DFR5.1|DEF_PECCP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|251756728|gb|ACT14804.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 170
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++++PD RL+ A+P+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP++I S + I EGCLS+P + R++ ++V AL+ EGK F
Sbjct: 61 IDVSEERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKTF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A LLAIC+QHE+DHL GK+FI+YLS K++RI +K K K+
Sbjct: 120 ELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165
>gi|258545465|ref|ZP_05705699.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
gi|258519298|gb|EEV88157.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
Length = 184
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 114/177 (64%), Gaps = 13/177 (7%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ +PD RL+K AEP+++F LK I NM TMY A GIGLAA+QV+IH+++++
Sbjct: 1 MPLLDILIHPDRRLRKTAEPVSQFTNALKTITDNMFATMYEAHGIGLAATQVNIHQRIVV 60
Query: 61 LDISKNNNQLQ-------------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKR 107
+D+ + + V INP+II S+E + EGCLSLPG F ++R +
Sbjct: 61 MDVPERREDDETETPDAPIPHTKLVLINPEIIATSEETASWQEGCLSLPGQFADVERPAK 120
Query: 108 IRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNI 164
IR ++ G E AEGLL +C+QHEIDHLNG +FI++LS K+ER+ KK K++
Sbjct: 121 IRYAYYDLGGSRCEGEAEGLLGVCIQHEIDHLNGVLFIDHLSRLKRERLEKKLAKSL 177
>gi|304415447|ref|ZP_07396096.1| peptide deformylase [Candidatus Regiella insecticola LSR1]
gi|304282711|gb|EFL91225.1| peptide deformylase [Candidatus Regiella insecticola LSR1]
Length = 200
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 126/175 (72%), Gaps = 10/175 (5%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+++PD++L+KIA+P+ + D N+++I+ +M +T+Y GIGLAA+QV+IHKQ+++
Sbjct: 24 MPILKILHFPDVQLRKIAKPVEKIDANIERIVDDMFDTIYAEEGIGLAATQVNIHKQIIV 83
Query: 61 LDISKNNNQLQ---------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVH 111
+ I +++Q + V INP+++ S E I EGCLS+PG+ +KRS+R+++
Sbjct: 84 IHIPDDSDQNERIEAHYRPLVLINPELLEESGETGI-KEGCLSIPGVREWVKRSERVKIR 142
Query: 112 ALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
AL+ +G F + A+GLLAIC+QHE+DHL GK+FI+YLS K +RI KK K ++
Sbjct: 143 ALDRDGNSFTLEADGLLAICIQHEMDHLKGKLFIDYLSPLKFQRIQKKIRKKAQR 197
>gi|403060217|ref|YP_006648434.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402807543|gb|AFR05181.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 170
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++++PD RL+ A+P+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP++I S + I EGCLS+P + R++ ++V AL+ EGK F
Sbjct: 61 IDVSEERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A LLAIC+QHE+DHL GK+FI+YLS K++RI +K K K+
Sbjct: 120 ELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165
>gi|157373176|ref|YP_001471776.1| peptide deformylase [Shewanella sediminis HAW-EB3]
gi|157315550|gb|ABV34648.1| Peptide deformylase [Shewanella sediminis HAW-EB3]
Length = 170
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 116/166 (69%), Gaps = 3/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL ++ +PD RL+ IA+P+ EF+ +L+ I NM +TMY GIGLAA+QVD H+ L+I
Sbjct: 1 MSLLKVLRFPDERLRTIAKPVAEFNADLQAQIDNMFDTMYEEKGIGLAATQVDFHQHLII 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNE-GCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+D+ + + VFIN +I +++ NE GCLS+PGI+ + R++ + + A + EG
Sbjct: 61 MDLQDDVERPTVFINMEIT--ARDGSCTNEEGCLSVPGIYANVDRAESVTIKAFDREGVE 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
F + A+GL AICLQHE+DHLNGK+F++YLS K++RI +K K +
Sbjct: 119 FTLDADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAAR 164
>gi|385873665|gb|AFI92185.1| Peptide deformylase [Pectobacterium sp. SCC3193]
Length = 170
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ A+ + E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRITAQSVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP++I S E I EGCLS+P + R++ ++V AL+ EGK+F
Sbjct: 61 IDVSEERDQRMVLINPELIEKSGETGI-EEGCLSIPETRALVPRAEHVKVRALDREGKVF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A LLAIC+QHE+DHL GK+FI+YLS K++RI +K K K+
Sbjct: 120 ELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165
>gi|410610887|ref|ZP_11321992.1| peptide deformylase [Glaciecola psychrophila 170]
gi|410169598|dbj|GAC35881.1| peptide deformylase [Glaciecola psychrophila 170]
Length = 169
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+ I + D ++ II +M +TM GIGLAA+QVD+HKQL++
Sbjct: 1 MAILDVLRFPDERLRTVAKKIEKVDKSITAIIADMFDTMRDENGIGLAATQVDVHKQLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + VFINP+I + K I EGCLS+P + +++R+++I V AL+ G+ F
Sbjct: 61 MDVSENQDAPMVFINPEITQ-KEGKTISEEGCLSVPNNYAQVERAEKITVSALDKTGEHF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI K K +
Sbjct: 120 TLEADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIKTKLEKEAR 164
>gi|120596857|ref|YP_961431.1| peptide deformylase [Shewanella sp. W3-18-1]
gi|120556950|gb|ABM22877.1| peptide deformylase [Shewanella sp. W3-18-1]
Length = 170
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ A+PITEFD L+ I NM ETMY GIGLAA+QVD HKQL++
Sbjct: 1 MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +VFINP+II S + EGCLS+PGI+ K+ R++ + V AL+ G F
Sbjct: 61 MDLQDEIERPKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGCEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ L AIC+QHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 120 IVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAR 164
>gi|451940123|ref|YP_007460761.1| polypeptide deformylase [Bartonella australis Aust/NH1]
gi|451899510|gb|AGF73973.1| polypeptide deformylase [Bartonella australis Aust/NH1]
Length = 176
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 119/168 (70%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P+I PD+ L+++++P+ D ++K+ +M ETMY A G+GLAA QV + ++L+
Sbjct: 1 MSVKPLILLPDLVLREVSKPVEHIDSAIQKLADDMLETMYDAQGVGLAAIQVAVPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+++ ++ V INP+I+W S E+ +Y EGCLS+P + +++R K +RV + EGK
Sbjct: 61 VDVARQDSSQNPLVIINPEILWLSDERSVYKEGCLSIPDYYAEVERPKCLRVRYRDREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+ LLA CLQHEIDHLNG++FI+++S K++ +I+KF K K+
Sbjct: 121 QKEIEADDLLATCLQHEIDHLNGRLFIDHISKMKRDIVIRKFKKRAKE 168
>gi|91791393|ref|YP_561044.1| peptide deformylase [Shewanella denitrificans OS217]
gi|91713395|gb|ABE53321.1| peptide deformylase [Shewanella denitrificans OS217]
Length = 170
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ IA P+T+F L+ I +M ETMY GIGLAASQVD H+QL++
Sbjct: 1 MPLLNVLRFPDERLRTIAVPVTDFGPQLQAQIDSMIETMYAEKGIGLAASQVDFHQQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + + ++FINP+I+ S E EGCLS+PG++ K+ R++ + + AL+ +GK F
Sbjct: 61 MDLQDDIERPKIFINPEIVAKSGEFS-NEEGCLSVPGVYAKVDRAEFVTLKALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ L AIC+QHE+DHL GK+F++YLS K++RI K K +
Sbjct: 120 TVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEAR 164
>gi|317494307|ref|ZP_07952721.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|365834671|ref|ZP_09376114.1| peptide deformylase [Hafnia alvei ATCC 51873]
gi|316917557|gb|EFV38902.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|364568784|gb|EHM46422.1| peptide deformylase [Hafnia alvei ATCC 51873]
Length = 169
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++++PD RL+ +A+P+ E +++I+ +M +TMY GIGLAA+QVD+H+++++
Sbjct: 1 MAVLQVLHFPDERLRTVAQPVKEVTPEIQRIVDDMFDTMYAEEGIGLAATQVDVHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ E I EGCLS+P + R++R+++ AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLSSDGETGI-EEGCLSVPEHRALVPRAERVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEK 161
>gi|319785850|ref|YP_004145325.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
gi|317464362|gb|ADV26094.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
Length = 170
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 112/165 (67%), Gaps = 4/165 (2%)
Query: 1 MTLLPIIYYPDIRLKKIA---EPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A EP ++++ +M ETMY A GIGLAA+QVD H +
Sbjct: 1 MALLPILEFPDPRLRTKAAQVEPAQVTTPGFQRLVDDMFETMYEAPGIGLAATQVDQHLR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D S++ + VFINP+I+ S+ ++Y EGCLS+PGI+ + R+ I V L+ EG
Sbjct: 61 FMVIDTSEDKSAPMVFINPEIVQ-SQGGRVYQEGCLSVPGIYADVTRADTIVVRFLDREG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ E+ A+GLLA C+QHE+DHL GK+F++YLS K+E + KK K
Sbjct: 120 RQQELAADGLLATCIQHEMDHLEGKLFVDYLSPLKREMVRKKLAK 164
>gi|429098212|ref|ZP_19160318.1| Peptide deformylase [Cronobacter dublinensis 582]
gi|426284552|emb|CCJ86431.1| Peptide deformylase [Cronobacter dublinensis 582]
Length = 171
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+ +AEP+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ E I EGCLS+P + R++++++ AL+ GK F
Sbjct: 61 IDVSENRDERLVLINPELLEQCGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRNGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEK 161
>gi|415857094|ref|ZP_11531923.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
gi|417709368|ref|ZP_12358391.1| peptide deformylase [Shigella flexneri VA-6]
gi|417741101|ref|ZP_12389665.1| peptide deformylase [Shigella flexneri 4343-70]
gi|417743805|ref|ZP_12392334.1| peptide deformylase [Shigella flexneri 2930-71]
gi|417829792|ref|ZP_12476335.1| peptide deformylase [Shigella flexneri J1713]
gi|419198992|ref|ZP_13742286.1| peptide deformylase [Escherichia coli DEC8A]
gi|420365309|ref|ZP_14866176.1| peptide deformylase [Shigella sonnei 4822-66]
gi|420375829|ref|ZP_14875653.1| peptide deformylase [Shigella flexneri 1235-66]
gi|313648791|gb|EFS13231.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
gi|332749748|gb|EGJ80163.1| peptide deformylase [Shigella flexneri 4343-70]
gi|332766530|gb|EGJ96737.1| peptide deformylase [Shigella flexneri 2930-71]
gi|332998300|gb|EGK17901.1| peptide deformylase [Shigella flexneri VA-6]
gi|335573684|gb|EGM60028.1| peptide deformylase [Shigella flexneri J1713]
gi|378044149|gb|EHW06570.1| peptide deformylase [Escherichia coli DEC8A]
gi|391292338|gb|EIQ50674.1| peptide deformylase [Shigella sonnei 4822-66]
gi|391309300|gb|EIQ66974.1| peptide deformylase [Shigella flexneri 1235-66]
Length = 164
Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 119/157 (75%), Gaps = 1/157 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++D+S+
Sbjct: 1 MLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE 60
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK FE+ AE
Sbjct: 61 NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAE 119
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 GLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 156
>gi|251788004|ref|YP_003002725.1| peptide deformylase [Dickeya zeae Ech1591]
gi|247536625|gb|ACT05246.1| peptide deformylase [Dickeya zeae Ech1591]
Length = 169
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ A+P+ E + +++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRIQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+++ S + I EGCLS+P + R++ ++V AL+ EGK F
Sbjct: 61 IDVSEERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEK 161
>gi|109896355|ref|YP_659610.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
gi|109698636|gb|ABG38556.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
Length = 169
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ + D ++K ++ +M ETM GIGLAA+Q+++HK++++
Sbjct: 1 MAILDVLRFPDERLRTVATPVDKIDSSIKTLVSDMLETMKDENGIGLAATQINVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ QVFINP+I + I EGCLS+P + K++R++++ V AL+ G F
Sbjct: 61 IDVSEEQDKPQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAEKVTVKALDENGDAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI K K +
Sbjct: 120 TLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEAR 164
>gi|146313352|ref|YP_001178426.1| peptide deformylase [Enterobacter sp. 638]
gi|167012063|sp|A4WF95.1|DEF_ENT38 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145320228|gb|ABP62375.1| peptide deformylase [Enterobacter sp. 638]
Length = 169
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+ +AEP+ E + +++I+ +M +TMY GIGLAA+QVDIHK++++
Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENREERLVLINPELLEQSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|357406749|ref|YP_004918673.1| peptide deformylase [Methylomicrobium alcaliphilum 20Z]
gi|351719414|emb|CCE25090.1| Peptide deformylase (PDF) [Methylomicrobium alcaliphilum 20Z]
Length = 176
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 115/160 (71%), Gaps = 1/160 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
+++L I+ +PD RL+K A P+ D +++K++ +M ETMY A G+GLAA+QV++HK++++
Sbjct: 7 LSILTILEFPDERLRKKAAPVETVDADIRKLVDDMFETMYEARGVGLAATQVNVHKRVIV 66
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ INP+I+ ++ EGCLS+PG F +KR++ I+V ALN +G+ F
Sbjct: 67 IDVSEEKKSPLCLINPEILAKDGIEET-EEGCLSVPGFFETVKRAEHIKVRALNRDGESF 125
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKF 160
E AE LLA+C+QHE+DHL GK+F++Y+S K++ I KK
Sbjct: 126 EFEAEDLLAVCVQHEMDHLEGKLFVDYISPLKRQMIKKKL 165
>gi|227115518|ref|ZP_03829174.1| peptide deformylase [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 170
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++++PD RL+ A+P+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP++I S + I EGCLS+P + R++ ++V AL+ EGK F
Sbjct: 61 IDVSEERDQRLVLINPELIEKSGDTGI-EEGCLSIPETRALVPRAEHVKVRALDREGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A LLAIC+QHE+DHL GK+FI+YLS K++RI +K K K+
Sbjct: 120 ELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165
>gi|395780427|ref|ZP_10460889.1| peptide deformylase [Bartonella washoensis 085-0475]
gi|423711978|ref|ZP_17686283.1| peptide deformylase [Bartonella washoensis Sb944nv]
gi|395412826|gb|EJF79306.1| peptide deformylase [Bartonella washoensis Sb944nv]
gi|395418773|gb|EJF85090.1| peptide deformylase [Bartonella washoensis 085-0475]
Length = 178
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 119/168 (70%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P++ PD L++++ P+ D L+K+ +M ETMY+A G+GLAA QV + ++L+
Sbjct: 1 MSIKPLVTLPDPILREVSRPVEHVDSTLQKLADDMLETMYNAQGVGLAAIQVGLPLRMLV 60
Query: 61 LDISKNN---NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D+S+N+ N L V INP+++W S E+ ++ EGCLS+P F +++R KR+ V + EG
Sbjct: 61 IDVSRNDAPKNPL-VIINPEVLWLSDERNVHKEGCLSIPEYFAEVERPKRLCVRYSDREG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
K EI A+ LLA CLQHEIDHLNG++FI+++S K++ +I+KF K +
Sbjct: 120 KHIEIEADDLLATCLQHEIDHLNGRLFIDHISKIKRDMVIRKFKKRAR 167
>gi|386037746|ref|YP_005957452.1| peptide deformylase [Klebsiella pneumoniae KCTC 2242]
gi|339764668|gb|AEK00888.1| peptide deformylase [Klebsiella pneumoniae KCTC 2242]
Length = 169
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ ALN K F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALNRYDKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>gi|113460190|ref|YP_718247.1| peptide deformylase [Haemophilus somnus 129PT]
gi|123131908|sp|Q0I181.1|DEF_HAES1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|112822233|gb|ABI24322.1| peptide deformylase [Haemophilus somnus 129PT]
Length = 170
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ YPD RLK +AEP++ FD L+ I NM ETMYH GIGLAA+QV++HK+++
Sbjct: 1 MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI V INP+I+ E I EGCLSLPG+ + R + ++V A N +G+ F
Sbjct: 61 IDIEGTKENQIVLINPEILESFGETGI-EEGCLSLPGLRGFVPRKETVKVKAQNRQGEDF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F ++LS K++R+ +K LK
Sbjct: 120 MLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLK 161
>gi|431930628|ref|YP_007243674.1| peptide deformylase [Thioflavicoccus mobilis 8321]
gi|431828931|gb|AGA90044.1| peptide deformylase [Thioflavicoccus mobilis 8321]
Length = 178
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 114/166 (68%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ A+P+ D +++I+ +M ETMY A GIGLAA QV I +++++
Sbjct: 1 MAKLDILTFPDSRLRNKAKPVPTVDDAVRQIVDDMLETMYDAPGIGLAAIQVGIPQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N INP+I+ S E ++ EGCLS+PG + R+ +R AL+ +GK F
Sbjct: 61 IDVSEEKNAPLCLINPQILAKSGEAEM-EEGCLSVPGFLEPVTRADWVRAAALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI AEGLLA C+QHEIDHL+GK+F++Y+S+ K+ RI KK K ++
Sbjct: 120 EIEAEGLLATCIQHEIDHLDGKLFVDYISSLKRYRIRKKLEKERRQ 165
>gi|359438231|ref|ZP_09228267.1| peptide deformylase [Pseudoalteromonas sp. BSi20311]
gi|359446419|ref|ZP_09236096.1| peptide deformylase [Pseudoalteromonas sp. BSi20439]
gi|392557232|ref|ZP_10304369.1| peptide deformylase [Pseudoalteromonas undina NCIMB 2128]
gi|358027070|dbj|GAA64516.1| peptide deformylase [Pseudoalteromonas sp. BSi20311]
gi|358039758|dbj|GAA72345.1| peptide deformylase [Pseudoalteromonas sp. BSi20439]
Length = 168
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ IA+ +T D +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MARLEVLRFPDERLRTIAKEVTVVDDQVREIVKDMLETMYDENGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP+II + EGCLS+P + K+ R++ + V ALN EGK F
Sbjct: 61 IDVSEERDEPLVLINPQIIKKDG-STVSEEGCLSVPHSYAKVDRAETVTVAALNEEGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 ILDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164
>gi|261823200|ref|YP_003261306.1| peptide deformylase [Pectobacterium wasabiae WPP163]
gi|261607213|gb|ACX89699.1| peptide deformylase [Pectobacterium wasabiae WPP163]
Length = 170
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ A+ + E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDERLRITAQSVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP++I S E I EGCLS+P + R++ ++V AL+ EGK+F
Sbjct: 61 IDVSEERDQRLVLINPELIEKSGETGI-EEGCLSIPETRALVPRAEHVKVRALDREGKVF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A LLAIC+QHE+DHL GK+FI+YLS K++RI +K K K+
Sbjct: 120 ELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165
>gi|440225369|ref|YP_007332460.1| peptide deformylase [Rhizobium tropici CIAT 899]
gi|440036880|gb|AGB69914.1| peptide deformylase [Rhizobium tropici CIAT 899]
Length = 171
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ ++PI + D ++++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPLLRQASKPIEQIDTEIQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+++ + VFINP+I+ S E+ +Y EGCLS+P + +++R R+ V L+ GK
Sbjct: 61 IDVAREGEEKAPLVFINPEIVASSDERSVYEEGCLSIPDYYAEVERPARVTVKHLDRNGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
AEGLLA C+QHEIDHLNG +FI+Y+S K+E +IKKF K K
Sbjct: 121 EQLTEAEGLLATCVQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAK 167
>gi|386311816|ref|YP_006007981.1| peptide deformylase [Shewanella putrefaciens 200]
gi|319424441|gb|ADV52515.1| peptide deformylase [Shewanella putrefaciens 200]
Length = 170
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 113/165 (68%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ A+PITEFD L+ I NM ETMY GIGLAA+QVD HKQL++
Sbjct: 1 MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +VFINP+II S + EGCLS+PGI+ K+ R++ + V AL+ G F
Sbjct: 61 MDLQDEVERPKVFINPEIISSSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRNGCEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A L AIC+QHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 120 IVEANELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAR 164
>gi|408379935|ref|ZP_11177526.1| peptide deformylase [Agrobacterium albertimagni AOL15]
gi|407746312|gb|EKF57837.1| peptide deformylase [Agrobacterium albertimagni AOL15]
Length = 170
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 115/168 (68%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++++ PI D L+++I +M ETMY A GIGLAA QV + ++LL+
Sbjct: 1 MTIKPLIILPDPLLRQVSAPIERVDAELEQLIDDMLETMYEAPGIGLAAIQVGVPRRLLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K + V+INP+II S E+ +Y EGCLS+P + +++R I V ++ +GK
Sbjct: 61 IDLAKEGEEPAPLVYINPEIIKSSDERSVYEEGCLSIPDYYAEVERPASITVKSIGRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+GLLA CLQHEIDHLNG +FI+++S K+E +IK+F K ++
Sbjct: 121 ETVTEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKRFTKAARQ 168
>gi|429093877|ref|ZP_19156449.1| Peptide deformylase [Cronobacter dublinensis 1210]
gi|426741182|emb|CCJ82562.1| Peptide deformylase [Cronobacter dublinensis 1210]
Length = 172
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+ +AEP+ E + ++++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ E I EGCLS+P + R++++++ AL+ GK F
Sbjct: 61 IDVSENRDERLVLINPELLEQCGETGI-EEGCLSIPEQRAFVPRAEKVKIRALDRNGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEK 161
>gi|374621130|ref|ZP_09693664.1| peptide deformylase [gamma proteobacterium HIMB55]
gi|374304357|gb|EHQ58541.1| peptide deformylase [gamma proteobacterium HIMB55]
Length = 168
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 111/166 (66%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+ +PD RL+ A P+ D ++ ++ +M ETMY A GIGLAASQ+D+H+Q+++
Sbjct: 1 MAIRKILEFPDPRLRTKAAPVETVDRRIQTLVEDMFETMYDANGIGLAASQIDVHEQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + + +VFINP + + + EGCLS+PG ++R K IRV AL+ +G
Sbjct: 61 IDLSNDRSTPRVFINPNVEVIDESLDGFEEGCLSVPGFSESVERPKAIRVTALDQDGTAI 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ GLLA+CLQHE+DHL GK+F++YLS K++RI ++ K ++
Sbjct: 121 DETVTGLLAVCLQHEMDHLQGKLFVDYLSPLKRQRIRQRLEKEQRR 166
>gi|390951441|ref|YP_006415200.1| peptide deformylase [Thiocystis violascens DSM 198]
gi|390428010|gb|AFL75075.1| peptide deformylase [Thiocystis violascens DSM 198]
Length = 178
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ A P+ D +++++ +M ETMY A GIGLAA+QVD+ Q+L+
Sbjct: 1 MAKLDILTFPDPRLRHKARPVEHVDAAIQRLVDDMLETMYAAPGIGLAATQVDVPLQVLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ ++ INP+I+ +Q+ +EGCLS+PG + + R++R+ V AL+ G+ F
Sbjct: 61 IDTSERHDTPLCLINPRILSLEGTEQM-DEGCLSVPGFYETVTRAERVSVQALDRAGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+GLLA+C+QHEIDHL GK+F++++S K++RI +K K+ ++
Sbjct: 120 TLDADGLLAVCIQHEIDHLAGKLFVDHISMLKRQRIRRKLEKDQRQ 165
>gi|440285903|ref|YP_007338668.1| peptide deformylase [Enterobacteriaceae bacterium strain FGI 57]
gi|440045425|gb|AGB76483.1| peptide deformylase [Enterobacteriaceae bacterium strain FGI 57]
Length = 169
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ + I EGCLS+P + R++++++ AL+ GK F
Sbjct: 61 IDVSENRDEQLVLINPELLEKHGDTGI-EEGCLSIPEQRALVPRAEQVKIRALDRNGKAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|343511702|ref|ZP_08748857.1| peptide deformylase [Vibrio scophthalmi LMG 19158]
gi|343515776|ref|ZP_08752826.1| peptide deformylase [Vibrio sp. N418]
gi|342797437|gb|EGU33087.1| peptide deformylase [Vibrio scophthalmi LMG 19158]
gi|342797732|gb|EGU33373.1| peptide deformylase [Vibrio sp. N418]
Length = 169
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+II E I EGCLS+PG + R+ + V ALN +G+ F
Sbjct: 61 IDISETRDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGEAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 SFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAK 161
>gi|448748148|ref|ZP_21729793.1| Formylmethionine deformylase [Halomonas titanicae BH1]
gi|445564269|gb|ELY20393.1| Formylmethionine deformylase [Halomonas titanicae BH1]
Length = 170
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 116/166 (69%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ +PD RL+ A + D +++++ +M ETMY A GIGLAA+Q+D+H+++++
Sbjct: 1 MAKLPILEFPDERLRTKAAAVETVDDEVRQLVDDMLETMYDARGIGLAATQIDVHRRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S +N+Q V INP+ EK+ +EGCLS+P + ++ R +++++AL+ G+ +
Sbjct: 61 MDVSDDNSQPLVLINPRYTPIGDEKEPLSEGCLSIPEHYAEVPRYLKVQLNALDRNGEAY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ AEGLLA C+QHE DHL G +F++YLS K++RI KK K K+
Sbjct: 121 ELEAEGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRIRKKMQKRHKQ 166
>gi|395782233|ref|ZP_10462637.1| peptide deformylase [Bartonella rattimassiliensis 15908]
gi|395419172|gb|EJF85473.1| peptide deformylase [Bartonella rattimassiliensis 15908]
Length = 178
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 116/169 (68%), Gaps = 4/169 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + ++ PD L+++++P+ +FD LK++ +M TMY+A G+GLAA Q+ I ++L+
Sbjct: 1 MPVRSLVTLPDPILREVSKPVEQFDSALKELADDMLRTMYNAKGVGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ----VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIE 116
+D+S N+ Q V INP+I+W S E+ IY EGCLS+P F +++R KR+ + + E
Sbjct: 61 MDVSGNSEDNQKKPLVIINPEILWLSDERNIYQEGCLSIPDYFAEVERPKRLCIRYQDRE 120
Query: 117 GKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
GK EI A+ LLA CLQHEIDHLNG +FI+YLS K++ +I+KF K K
Sbjct: 121 GKHTEIEADDLLATCLQHEIDHLNGHLFIDYLSKIKRDIVIRKFKKRAK 169
>gi|343496684|ref|ZP_08734776.1| peptide deformylase [Vibrio nigripulchritudo ATCC 27043]
gi|342820881|gb|EGU55688.1| peptide deformylase [Vibrio nigripulchritudo ATCC 27043]
Length = 173
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S +Q V INP+I E I EGCLS+PG + R+ + V AL+ EGK +
Sbjct: 61 IDVSDTRDQPMVLINPEITDKRGEDGI-EEGCLSIPGARALVPRAAEVSVTALDREGKEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K LK
Sbjct: 120 SFEADELLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKMLK 161
>gi|423204430|ref|ZP_17190986.1| peptide deformylase [Aeromonas veronii AMC34]
gi|404627295|gb|EKB24100.1| peptide deformylase [Aeromonas veronii AMC34]
Length = 170
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ F L++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N V INP++I I EGCLS+PG + R+++I++ AL+ GK F
Sbjct: 61 IDVSENREDPLVLINPEVISQCGSTGI-EEGCLSVPGSRALVPRAEQIKIRALDRHGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K ++
Sbjct: 120 ELEADDLLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMARE 165
>gi|451823352|ref|YP_007459626.1| N-formylmethionyl-tRNA deformylase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776152|gb|AGF47193.1| N-formylmethionyl-tRNA deformylase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 167
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 114/162 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +AEP+ +FD NL II +M TMY++ G+GLAA+QV+I K++++
Sbjct: 1 MALLSILKYPDSRLNLVAEPVRDFDDNLNLIIKDMAFTMYNSNGLGLAATQVNIQKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ N L V INP+I +S K EGCLS+ ++ K++RS I ++ G++
Sbjct: 61 IDISEDQNHLMVLINPEITVFSNNKLFEREGCLSVVDVYEKVERSSNIICKFMDQNGELR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ AEGLL+ C+QHE+DHLNGK+FI+ LS+ K++RI K K
Sbjct: 121 NLEAEGLLSRCIQHELDHLNGKLFIDRLSSLKRDRIRTKINK 162
>gi|406675260|ref|ZP_11082449.1| peptide deformylase [Aeromonas veronii AMC35]
gi|404627592|gb|EKB24392.1| peptide deformylase [Aeromonas veronii AMC35]
Length = 170
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ F L++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N V INP++I I EGCLS+PG + R+++I++ AL+ GK F
Sbjct: 61 IDVSENREDPLVLINPEVIEQCGSTGI-EEGCLSVPGSRALVPRAEQIKIRALDRNGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K ++
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165
>gi|153834309|ref|ZP_01986976.1| peptide deformylase [Vibrio harveyi HY01]
gi|148869317|gb|EDL68331.1| peptide deformylase [Vibrio harveyi HY01]
Length = 172
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 114/162 (70%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ E ++KI+ +M ETMY GIGLAA+QVDIHK++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK +
Sbjct: 61 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 TFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQEKLAK 161
>gi|114770091|ref|ZP_01447629.1| peptide deformylase [Rhodobacterales bacterium HTCC2255]
gi|114548928|gb|EAU51811.1| peptide deformylase [alpha proteobacterium HTCC2255]
Length = 172
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 111/164 (67%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LLPI+ +PD RLKK+ P+ D +K+ +M ETMY A G+GLAA QV ++ +
Sbjct: 1 MSLLPILLHPDPRLKKLCVPVQSVDAETRKLADSMIETMYDAPGVGLAAPQVASDARIFV 60
Query: 61 LDI--SKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D S+++NQ V INP+II S+E Y+EGCLSLP +F ++R K++R+ L+I+GK
Sbjct: 61 MDCTDSESDNQPLVLINPEIISVSEELNTYSEGCLSLPDLFEDVERPKQVRMSFLDIDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ +GL A C QHE+DHLNG +FI++LS K+ + KK +K
Sbjct: 121 QHNELFDGLWATCAQHELDHLNGVLFIDHLSRMKRSMMTKKMVK 164
>gi|444354434|ref|YP_007390578.1| Peptide deformylase (EC 3.5.1.88) [Enterobacter aerogenes EA1509E]
gi|443905264|emb|CCG33038.1| Peptide deformylase (EC 3.5.1.88) [Enterobacter aerogenes EA1509E]
Length = 164
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ PD RL+K+AEP+ E + +++I+ +M +TMY GIGLAA+QVDIH++++++D+S+
Sbjct: 1 MLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSE 60
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N + V INP+++ E I EGCLS+P + R++ +++ AL+ EGK FE+ A+
Sbjct: 61 NREERLVLINPELLEKDGETGI-EEGCLSIPEQRALVPRAETVKIRALDREGKTFELEAD 119
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 GLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 156
>gi|423203176|ref|ZP_17189754.1| peptide deformylase [Aeromonas veronii AER39]
gi|404613405|gb|EKB10427.1| peptide deformylase [Aeromonas veronii AER39]
Length = 170
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ F L++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N V INP++I I EGCLS+PG + R+++I++ AL+ GK F
Sbjct: 61 IDVSENREDPLVLINPEVIEQCGSTGI-EEGCLSVPGSRALVPRAEQIKIRALDRHGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K ++
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165
>gi|330831510|ref|YP_004394462.1| peptide deformylase 1 [Aeromonas veronii B565]
gi|423211839|ref|ZP_17198372.1| peptide deformylase [Aeromonas veronii AER397]
gi|328806646|gb|AEB51845.1| Peptide deformylase 1 [Aeromonas veronii B565]
gi|404612640|gb|EKB09698.1| peptide deformylase [Aeromonas veronii AER397]
Length = 170
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ F L++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N V INP++I I EGCLS+PG + R+++I++ AL+ GK F
Sbjct: 61 IDVSENREDPLVLINPEVIEQCGSTGI-EEGCLSVPGSRALVPRAEQIKIRALDRNGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K ++
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165
>gi|244539096|dbj|BAH83139.1| peptide deformylase [Candidatus Ishikawaella capsulata Mpkobe]
Length = 167
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+++PD RL++IA+ +T D +++ +I +M+ETMY GIGLAA+QVDI++++++
Sbjct: 3 MSILKILHFPDHRLRRIAKLVTHVDKHIQYLIDDMSETMYAEQGIGLAATQVDINQRIIV 62
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + L V INP+++ +I EGCLS+P + + R++ I++ AL+ +GK +
Sbjct: 63 IDVSENRDSLYVMINPEVLEKRGHARI-KEGCLSIPNFRDFVSRAEYIKIQALDRDGKKY 121
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ + GLLAIC+QHEIDHL+GK+FI+YLS K++RI KK K
Sbjct: 122 ELESYGLLAICIQHEIDHLDGKLFIDYLSPLKRQRIEKKISK 163
>gi|386816649|ref|ZP_10103867.1| peptide deformylase [Thiothrix nivea DSM 5205]
gi|386421225|gb|EIJ35060.1| peptide deformylase [Thiothrix nivea DSM 5205]
Length = 176
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 120/166 (72%), Gaps = 6/166 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+++PD RL+K A P+ E + ++I+ +M TMY GIGLAA+QV++H++++
Sbjct: 1 MAQLEILHHPDPRLRKKAAPVGEVNTATRQIVEDMFATMYANKGIGLAATQVNVHQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQI-YNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+D+S++ + INP+I+ SKE I + EGCLS+P + K+ R++RIRV AL+ +G +
Sbjct: 61 IDVSEDKTEPLCLINPEIL--SKEGSIEHEEGCLSVPDFYEKVTRAERIRVRALDRDGNV 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKER---IIKKFLK 162
FE A+GLLAIC+QHE+DHL GK+F++YLS K++R +++K+ K
Sbjct: 119 FERDADGLLAICIQHEMDHLEGKLFVDYLSTLKQQRARKVVQKWEK 164
>gi|163803316|ref|ZP_02197194.1| peptide deformylase [Vibrio sp. AND4]
gi|159172886|gb|EDP57725.1| peptide deformylase [Vibrio sp. AND4]
Length = 172
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ E ++KI+ +M ETMY GIGLAA+QVDIHK++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK +
Sbjct: 61 IDVSETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAK 161
>gi|415810455|ref|ZP_11502822.1| peptide deformylase [Escherichia coli LT-68]
gi|417614892|ref|ZP_12265346.1| peptide deformylase [Escherichia coli STEC_EH250]
gi|418956330|ref|ZP_13508258.1| peptide deformylase [Escherichia coli J53]
gi|418998697|ref|ZP_13546281.1| peptide deformylase [Escherichia coli DEC1A]
gi|419351495|ref|ZP_13892825.1| peptide deformylase [Escherichia coli DEC13B]
gi|419367087|ref|ZP_13908237.1| peptide deformylase [Escherichia coli DEC13E]
gi|419377351|ref|ZP_13918370.1| peptide deformylase [Escherichia coli DEC14B]
gi|420338990|ref|ZP_14840542.1| peptide deformylase [Shigella flexneri K-315]
gi|421815695|ref|ZP_16251352.1| peptide deformylase [Escherichia coli 8.0416]
gi|423727241|ref|ZP_17701152.1| peptide deformylase [Escherichia coli PA31]
gi|424079443|ref|ZP_17816410.1| peptide deformylase [Escherichia coli FDA505]
gi|424098971|ref|ZP_17834246.1| peptide deformylase [Escherichia coli FRIK1985]
gi|424105183|ref|ZP_17839925.1| peptide deformylase [Escherichia coli FRIK1990]
gi|424111831|ref|ZP_17846060.1| peptide deformylase [Escherichia coli 93-001]
gi|424123957|ref|ZP_17857263.1| peptide deformylase [Escherichia coli PA5]
gi|424130107|ref|ZP_17863009.1| peptide deformylase [Escherichia coli PA9]
gi|424136429|ref|ZP_17868876.1| peptide deformylase [Escherichia coli PA10]
gi|424142982|ref|ZP_17874848.1| peptide deformylase [Escherichia coli PA14]
gi|424332906|ref|ZP_17897616.1| peptide deformylase [Escherichia coli PA28]
gi|424457858|ref|ZP_17908967.1| peptide deformylase [Escherichia coli PA33]
gi|424470620|ref|ZP_17920431.1| peptide deformylase [Escherichia coli PA41]
gi|424495731|ref|ZP_17943342.1| peptide deformylase [Escherichia coli TW09195]
gi|424516026|ref|ZP_17960658.1| peptide deformylase [Escherichia coli TW14313]
gi|424571309|ref|ZP_18011852.1| peptide deformylase [Escherichia coli EC4448]
gi|424817835|ref|ZP_18242986.1| hypothetical protein ECD227_2952 [Escherichia fergusonii ECD227]
gi|425106054|ref|ZP_18508366.1| peptide deformylase [Escherichia coli 5.2239]
gi|425116840|ref|ZP_18518629.1| peptide deformylase [Escherichia coli 8.0566]
gi|425146017|ref|ZP_18546005.1| peptide deformylase [Escherichia coli 10.0869]
gi|425152136|ref|ZP_18551746.1| peptide deformylase [Escherichia coli 88.0221]
gi|425158010|ref|ZP_18557269.1| peptide deformylase [Escherichia coli PA34]
gi|425188472|ref|ZP_18585740.1| peptide deformylase [Escherichia coli FRIK1997]
gi|425279674|ref|ZP_18670900.1| peptide deformylase [Escherichia coli ARS4.2123]
gi|425285056|ref|ZP_18676085.1| peptide deformylase [Escherichia coli TW00353]
gi|425302146|ref|ZP_18692029.1| peptide deformylase [Escherichia coli 07798]
gi|425313313|ref|ZP_18702487.1| peptide deformylase [Escherichia coli EC1735]
gi|425319290|ref|ZP_18708073.1| peptide deformylase [Escherichia coli EC1736]
gi|425325389|ref|ZP_18713740.1| peptide deformylase [Escherichia coli EC1737]
gi|425331757|ref|ZP_18719588.1| peptide deformylase [Escherichia coli EC1846]
gi|425344247|ref|ZP_18731132.1| peptide deformylase [Escherichia coli EC1848]
gi|425350049|ref|ZP_18736511.1| peptide deformylase [Escherichia coli EC1849]
gi|425374848|ref|ZP_18759485.1| peptide deformylase [Escherichia coli EC1864]
gi|425400528|ref|ZP_18783228.1| peptide deformylase [Escherichia coli EC1869]
gi|425419316|ref|ZP_18800580.1| peptide deformylase [Escherichia coli FRIK523]
gi|425430590|ref|ZP_18811194.1| peptide deformylase [Escherichia coli 0.1304]
gi|428949022|ref|ZP_19021293.1| peptide deformylase [Escherichia coli 88.1467]
gi|428979904|ref|ZP_19049719.1| peptide deformylase [Escherichia coli 90.2281]
gi|428997702|ref|ZP_19066291.1| peptide deformylase [Escherichia coli 94.0618]
gi|429003978|ref|ZP_19072071.1| peptide deformylase [Escherichia coli 95.0183]
gi|429010077|ref|ZP_19077527.1| peptide deformylase [Escherichia coli 95.1288]
gi|429028493|ref|ZP_19094481.1| peptide deformylase [Escherichia coli 96.0427]
gi|429046602|ref|ZP_19111309.1| peptide deformylase [Escherichia coli 96.0107]
gi|429057483|ref|ZP_19121762.1| peptide deformylase [Escherichia coli 97.1742]
gi|429069208|ref|ZP_19132659.1| peptide deformylase [Escherichia coli 99.0672]
gi|429080919|ref|ZP_19144043.1| peptide deformylase [Escherichia coli 99.0713]
gi|429828392|ref|ZP_19359409.1| peptide deformylase [Escherichia coli 96.0109]
gi|444949107|ref|ZP_21267406.1| peptide deformylase [Escherichia coli 99.0839]
gi|444954738|ref|ZP_21272813.1| peptide deformylase [Escherichia coli 99.0848]
gi|444961608|ref|ZP_21279380.1| peptide deformylase [Escherichia coli 99.1775]
gi|444972213|ref|ZP_21289538.1| peptide deformylase [Escherichia coli 99.1793]
gi|444992726|ref|ZP_21309364.1| peptide deformylase [Escherichia coli PA19]
gi|445025999|ref|ZP_21341811.1| peptide deformylase [Escherichia coli 7.1982]
gi|445042683|ref|ZP_21358041.1| peptide deformylase [Escherichia coli PA35]
gi|445052685|ref|ZP_21367705.1| peptide deformylase [Escherichia coli 95.0083]
gi|323173923|gb|EFZ59551.1| peptide deformylase [Escherichia coli LT-68]
gi|325498855|gb|EGC96714.1| hypothetical protein ECD227_2952 [Escherichia fergusonii ECD227]
gi|345359907|gb|EGW92081.1| peptide deformylase [Escherichia coli STEC_EH250]
gi|377840321|gb|EHU05395.1| peptide deformylase [Escherichia coli DEC1A]
gi|378197339|gb|EHX57820.1| peptide deformylase [Escherichia coli DEC13B]
gi|378210279|gb|EHX70642.1| peptide deformylase [Escherichia coli DEC13E]
gi|378216064|gb|EHX76352.1| peptide deformylase [Escherichia coli DEC14B]
gi|384381090|gb|EIE38953.1| peptide deformylase [Escherichia coli J53]
gi|390640656|gb|EIN20107.1| peptide deformylase [Escherichia coli FDA505]
gi|390658123|gb|EIN35925.1| peptide deformylase [Escherichia coli FRIK1985]
gi|390658180|gb|EIN35980.1| peptide deformylase [Escherichia coli 93-001]
gi|390661207|gb|EIN38869.1| peptide deformylase [Escherichia coli FRIK1990]
gi|390678571|gb|EIN54522.1| peptide deformylase [Escherichia coli PA5]
gi|390682203|gb|EIN57979.1| peptide deformylase [Escherichia coli PA9]
gi|390693635|gb|EIN68254.1| peptide deformylase [Escherichia coli PA10]
gi|390698115|gb|EIN72504.1| peptide deformylase [Escherichia coli PA14]
gi|390725378|gb|EIN97887.1| peptide deformylase [Escherichia coli PA28]
gi|390738860|gb|EIO10057.1| peptide deformylase [Escherichia coli PA31]
gi|390742863|gb|EIO13852.1| peptide deformylase [Escherichia coli PA33]
gi|390764767|gb|EIO33964.1| peptide deformylase [Escherichia coli PA41]
gi|390825631|gb|EIO91548.1| peptide deformylase [Escherichia coli TW09195]
gi|390843113|gb|EIP06931.1| peptide deformylase [Escherichia coli TW14313]
gi|390893494|gb|EIP53045.1| peptide deformylase [Escherichia coli EC4448]
gi|391257218|gb|EIQ16338.1| peptide deformylase [Shigella flexneri K-315]
gi|408067590|gb|EKH02023.1| peptide deformylase [Escherichia coli PA34]
gi|408101934|gb|EKH34352.1| peptide deformylase [Escherichia coli FRIK1997]
gi|408198748|gb|EKI23964.1| peptide deformylase [Escherichia coli ARS4.2123]
gi|408199662|gb|EKI24857.1| peptide deformylase [Escherichia coli TW00353]
gi|408211313|gb|EKI35861.1| peptide deformylase [Escherichia coli 07798]
gi|408225018|gb|EKI48714.1| peptide deformylase [Escherichia coli EC1735]
gi|408236194|gb|EKI59106.1| peptide deformylase [Escherichia coli EC1736]
gi|408239908|gb|EKI62633.1| peptide deformylase [Escherichia coli EC1737]
gi|408244484|gb|EKI66913.1| peptide deformylase [Escherichia coli EC1846]
gi|408257110|gb|EKI78454.1| peptide deformylase [Escherichia coli EC1848]
gi|408263720|gb|EKI84554.1| peptide deformylase [Escherichia coli EC1849]
gi|408289402|gb|EKJ08163.1| peptide deformylase [Escherichia coli EC1864]
gi|408316873|gb|EKJ33126.1| peptide deformylase [Escherichia coli EC1869]
gi|408334883|gb|EKJ49753.1| peptide deformylase [Escherichia coli FRIK523]
gi|408344272|gb|EKJ58647.1| peptide deformylase [Escherichia coli 0.1304]
gi|408546799|gb|EKK24206.1| peptide deformylase [Escherichia coli 5.2239]
gi|408565130|gb|EKK41221.1| peptide deformylase [Escherichia coli 8.0566]
gi|408589318|gb|EKK63839.1| peptide deformylase [Escherichia coli 10.0869]
gi|408594902|gb|EKK69175.1| peptide deformylase [Escherichia coli 88.0221]
gi|408597149|gb|EKK71222.1| peptide deformylase [Escherichia coli 8.0416]
gi|427206248|gb|EKV76465.1| peptide deformylase [Escherichia coli 88.1467]
gi|427222345|gb|EKV91135.1| peptide deformylase [Escherichia coli 90.2281]
gi|427243822|gb|EKW11177.1| peptide deformylase [Escherichia coli 94.0618]
gi|427258159|gb|EKW24261.1| peptide deformylase [Escherichia coli 95.0183]
gi|427261500|gb|EKW27431.1| peptide deformylase [Escherichia coli 95.1288]
gi|427277108|gb|EKW41657.1| peptide deformylase [Escherichia coli 96.0427]
gi|427296621|gb|EKW59670.1| peptide deformylase [Escherichia coli 96.0107]
gi|427309474|gb|EKW71791.1| peptide deformylase [Escherichia coli 97.1742]
gi|427317153|gb|EKW79063.1| peptide deformylase [Escherichia coli 99.0672]
gi|427326268|gb|EKW87691.1| peptide deformylase [Escherichia coli 99.0713]
gi|429251851|gb|EKY36419.1| peptide deformylase [Escherichia coli 96.0109]
gi|444555520|gb|ELV32983.1| peptide deformylase [Escherichia coli 99.0839]
gi|444560771|gb|ELV37914.1| peptide deformylase [Escherichia coli 99.0848]
gi|444575312|gb|ELV51556.1| peptide deformylase [Escherichia coli 99.1793]
gi|444586469|gb|ELV61972.1| peptide deformylase [Escherichia coli 99.1775]
gi|444605005|gb|ELV79661.1| peptide deformylase [Escherichia coli PA19]
gi|444635157|gb|ELW08595.1| peptide deformylase [Escherichia coli 7.1982]
gi|444651048|gb|ELW23858.1| peptide deformylase [Escherichia coli PA35]
gi|444660865|gb|ELW33210.1| peptide deformylase [Escherichia coli 95.0083]
Length = 164
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 119/157 (75%), Gaps = 1/157 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++D+S+
Sbjct: 1 MLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE 60
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK FE+ A+
Sbjct: 61 NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAD 119
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 GLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 156
>gi|350529766|ref|ZP_08908707.1| peptide deformylase [Vibrio rotiferianus DAT722]
Length = 172
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ E ++KI+ +M ETMY GIGLAA+QVDIHK++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK +
Sbjct: 61 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAK 161
>gi|28899816|ref|NP_799421.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
gi|153837667|ref|ZP_01990334.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
gi|260362018|ref|ZP_05775023.1| peptide deformylase [Vibrio parahaemolyticus K5030]
gi|260876495|ref|ZP_05888850.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
gi|260897448|ref|ZP_05905944.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
gi|260901339|ref|ZP_05909734.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
gi|417321567|ref|ZP_12108103.1| peptide deformylase [Vibrio parahaemolyticus 10329]
gi|433659116|ref|YP_007276495.1| Peptide deformylase [Vibrio parahaemolyticus BB22OP]
gi|31076643|sp|Q87KD5.1|DEF1_VIBPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|28808068|dbj|BAC61305.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
gi|149748957|gb|EDM59784.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
gi|308087895|gb|EFO37590.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
gi|308090413|gb|EFO40108.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
gi|308109891|gb|EFO47431.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
gi|308114143|gb|EFO51683.1| peptide deformylase [Vibrio parahaemolyticus K5030]
gi|328471167|gb|EGF42069.1| peptide deformylase [Vibrio parahaemolyticus 10329]
gi|432509804|gb|AGB11321.1| Peptide deformylase [Vibrio parahaemolyticus BB22OP]
Length = 172
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++KI+ +M ETMY GIGLAA+QVDIHK++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVDAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK F
Sbjct: 61 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAK 161
>gi|419116822|ref|ZP_13661833.1| peptide deformylase [Escherichia coli DEC5A]
gi|377958169|gb|EHV21689.1| peptide deformylase [Escherichia coli DEC5A]
Length = 164
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 119/157 (75%), Gaps = 1/157 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++D+S+
Sbjct: 1 MLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE 60
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK FE+ A+
Sbjct: 61 NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAD 119
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 GLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 156
>gi|197287101|ref|YP_002152973.1| peptide deformylase [Proteus mirabilis HI4320]
gi|227354903|ref|ZP_03839317.1| polypeptide deformylase [Proteus mirabilis ATCC 29906]
gi|425070312|ref|ZP_18473426.1| peptide deformylase [Proteus mirabilis WGLW6]
gi|425070624|ref|ZP_18473730.1| peptide deformylase [Proteus mirabilis WGLW4]
gi|194684588|emb|CAR46445.1| polypeptide deformylase [Proteus mirabilis HI4320]
gi|227164985|gb|EEI49824.1| polypeptide deformylase [Proteus mirabilis ATCC 29906]
gi|404595444|gb|EKA95988.1| peptide deformylase [Proteus mirabilis WGLW6]
gi|404600146|gb|EKB00594.1| peptide deformylase [Proteus mirabilis WGLW4]
Length = 171
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++YPD RL+ IA+P+ + D ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+++ + I EGCLS+P + R++R++V AL+ G+ F
Sbjct: 61 IDISETRDQKLVLINPELLDQEGDTGI-EEGCLSIPEQRAFVPRAERVKVRALDYNGQPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K+
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKR 165
>gi|91226303|ref|ZP_01261143.1| peptide deformylase [Vibrio alginolyticus 12G01]
gi|262392831|ref|YP_003284685.1| peptide deformylase [Vibrio sp. Ex25]
gi|451972170|ref|ZP_21925381.1| peptide deformylase [Vibrio alginolyticus E0666]
gi|91189314|gb|EAS75593.1| peptide deformylase [Vibrio alginolyticus 12G01]
gi|262336425|gb|ACY50220.1| peptide deformylase [Vibrio sp. Ex25]
gi|451931835|gb|EMD79518.1| peptide deformylase [Vibrio alginolyticus E0666]
Length = 172
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++KI+ +M ETMY GIGLAA+QVDIHK++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK F
Sbjct: 61 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAK 161
>gi|156972726|ref|YP_001443633.1| peptide deformylase [Vibrio harveyi ATCC BAA-1116]
gi|388599827|ref|ZP_10158223.1| peptide deformylase [Vibrio campbellii DS40M4]
gi|424034607|ref|ZP_17774010.1| peptide deformylase [Vibrio cholerae HENC-01]
gi|424039273|ref|ZP_17777674.1| peptide deformylase [Vibrio cholerae HENC-02]
gi|166198526|sp|A7N121.1|DEF_VIBHB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|156524320|gb|ABU69406.1| hypothetical protein VIBHAR_00391 [Vibrio harveyi ATCC BAA-1116]
gi|408872268|gb|EKM11489.1| peptide deformylase [Vibrio cholerae HENC-01]
gi|408893171|gb|EKM30455.1| peptide deformylase [Vibrio cholerae HENC-02]
Length = 172
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ E ++KI+ +M ETMY GIGLAA+QVDIHK++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK +
Sbjct: 61 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAK 161
>gi|307543965|ref|YP_003896444.1| peptide deformylase [Halomonas elongata DSM 2581]
gi|307215989|emb|CBV41259.1| peptide deformylase [Halomonas elongata DSM 2581]
Length = 170
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 113/165 (68%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ +PD RL+ A + D +++++ +M ETMY A GIGLAA+QVD+H+++++
Sbjct: 1 MAKLPILEFPDERLRTEAAAVETVDDEVRQLVDDMLETMYDARGIGLAATQVDVHRRVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + + V INP+ E++ EGCLS+P + ++ R+ ++ + ALN +G+ +
Sbjct: 61 MDVSDDQSAPLVLINPEYTPIGDEREPMQEGCLSIPEYYAEVPRALKVHLKALNRQGEPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ AEGLLA C+QHE DHL G +F++YLS K++R++KK K K
Sbjct: 121 ELEAEGLLAHCIQHECDHLRGVLFVDYLSPLKRDRVMKKMQKRHK 165
>gi|411011230|ref|ZP_11387559.1| peptide deformylase [Aeromonas aquariorum AAK1]
gi|423199141|ref|ZP_17185724.1| peptide deformylase [Aeromonas hydrophila SSU]
gi|404629495|gb|EKB26242.1| peptide deformylase [Aeromonas hydrophila SSU]
Length = 170
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ IA P+ F L+ I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAILDVLRFPDERLRTIAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N V INP+II + I EGCLS+PG + R++ ++V AL+ GK F
Sbjct: 61 IDVSENREDPLVLINPEIIEQAGSTGI-EEGCLSVPGSRALVPRAEWVKVRALDRHGKAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K ++
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165
>gi|317049806|ref|YP_004117454.1| peptide deformylase [Pantoea sp. At-9b]
gi|316951423|gb|ADU70898.1| peptide deformylase [Pantoea sp. At-9b]
Length = 170
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+KIA P+ D +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHFPDDRLRKIAAPVKTVDAGVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + V INP+++ E I EGCLS+P + R++ ++V A + +G F
Sbjct: 61 IDVSESREERLVLINPELLEKGGETGI-EEGCLSIPEQRAFVPRAEWVKVRAQDRDGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLAIC+QHEIDHL+GK+FI+YLS K++RI +K K
Sbjct: 120 ELETDGLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKQKLEK 161
>gi|254447455|ref|ZP_05060921.1| peptide deformylase [gamma proteobacterium HTCC5015]
gi|198262798|gb|EDY87077.1| peptide deformylase [gamma proteobacterium HTCC5015]
Length = 169
Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+++PD RL++ +P+ + D L++ I +M ETMY A GIGLAA QV+ H++LLI
Sbjct: 1 MAKLEILHFPDPRLRQACKPVEQVDDELRQFIDDMFETMYDAPGIGLAAIQVNRHERLLI 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
D+S++ + VFINP+II + ++ EGCLS+PG + ++R++ I V AL+ +GK F
Sbjct: 61 TDVSEDASNPLVFINPEIIE-ADGVEVTQEGCLSVPGFYENVERAEHIVVKALDRDGKAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ +GL A+C+QHEIDHL+GK+F++YLS K+ RI
Sbjct: 120 EMACDGLQAVCVQHEIDHLDGKLFVDYLSPLKRNRI 155
>gi|345869606|ref|ZP_08821563.1| Peptide deformylase [Thiorhodococcus drewsii AZ1]
gi|343922989|gb|EGV33686.1| Peptide deformylase [Thiorhodococcus drewsii AZ1]
Length = 176
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ A P+T+ D ++++++ +M ETMY A GIGLAA+QVD+ +++++
Sbjct: 1 MAKLDILTFPDPRLRLKALPVTQVDDSVRELVDDMLETMYAAPGIGLAANQVDVQRRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+N++ INP+I+ + Q+ +EGCLS+PG F + R++ + V AL+ +G F
Sbjct: 61 IDTSENHDTPLCLINPEILSKEGKTQM-DEGCLSVPGFFEPVTRAEAVTVSALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+GLLA+C+QHE+DHL+GK+F++++S K++RI +K K+ ++
Sbjct: 120 TLEADGLLAVCIQHELDHLDGKLFVDHISILKRQRIRRKLEKDQRQ 165
>gi|389795255|ref|ZP_10198385.1| peptide deformylase [Rhodanobacter fulvus Jip2]
gi|388431032|gb|EIL88136.1| peptide deformylase [Rhodanobacter fulvus Jip2]
Length = 169
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ +PD RL+ A P+T FD LK+ + +M ETMY A G+GLAA+QV++H+++L+
Sbjct: 1 MSVLSILEFPDPRLRTRAVPVTVFDAKLKQFVADMFETMYAANGVGLAATQVNVHQRVLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
D+S+ + IN +I+ + Q+Y EGCLS PG++ + R+ +++V A + G F
Sbjct: 61 TDMSEGRTEPLALINAQILE-KEGSQVYQEGCLSFPGLYADVTRALKVKVKAQDAAGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ AEG LA+C+QHEIDHL+GK+F+++LS K+ ++K+ K K+
Sbjct: 120 VVDAEGPLAVCIQHEIDHLDGKVFVDHLSALKRGMLLKRLEKARKQ 165
>gi|381157106|ref|ZP_09866340.1| peptide deformylase [Thiorhodovibrio sp. 970]
gi|380880969|gb|EIC23059.1| peptide deformylase [Thiorhodovibrio sp. 970]
Length = 182
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 123/163 (75%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +P+ RL+ AEP+ + D N+++I+ +M ETMY A GIGLAA QV I K++++
Sbjct: 1 MAKLEILTFPNARLRNHAEPVAQVDANIQRIVDDMLETMYAAPGIGLAAIQVGIAKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N+NQ V INP+I+ E+++ +EGCLS+PG + ++R++R+R ALN +GK F
Sbjct: 61 IDISENHNQPVVLINPEILALEGEEEM-DEGCLSVPGYYETVRRAERVRARALNRKGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ GLLA+C+QHEIDHL GK+F++YLS+ K++RI +K K+
Sbjct: 120 ELETGGLLAVCIQHEIDHLEGKLFVDYLSSLKRQRIRRKLEKD 162
>gi|152994060|ref|YP_001338895.1| peptide deformylase [Marinomonas sp. MWYL1]
gi|150834984|gb|ABR68960.1| peptide deformylase [Marinomonas sp. MWYL1]
Length = 181
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 110/162 (67%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ YPD RL+KIA+PIT+F L+ I +M +TMY G+GLAA+QVD H +L++
Sbjct: 11 MAVLTVLEYPDKRLRKIAKPITKFTDELQTKIDDMLDTMYDENGLGLAATQVDYHHRLVV 70
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ N+ VFINP+ E + EGCLS+PG + I R+ ++RV AL+ GK F
Sbjct: 71 MDFSEERNEPIVFINPEFEVLDDEPNEFQEGCLSVPGFYEHIYRAAKVRVKALDRNGKPF 130
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ + L+A+C+QHE+DHL+GK+ ++YL+ K+ RI K K
Sbjct: 131 TLEVDELMAVCVQHEVDHLDGKLMVDYLTPLKRNRIKSKLEK 172
>gi|410647447|ref|ZP_11357879.1| peptide deformylase [Glaciecola agarilytica NO2]
gi|410133037|dbj|GAC06278.1| peptide deformylase [Glaciecola agarilytica NO2]
Length = 169
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ + D +K +I +M ETM GIGLAA+Q+++HK++++
Sbjct: 1 MAILDVLRFPDERLRTVAAPVEKIDGTIKTLISDMLETMKDENGIGLAATQINVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + QVFINP+I + I EGCLS+P + K++R++ I V+AL+ G F
Sbjct: 61 IDVSEKQDNPQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAETISVNALDENGDAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI K K +
Sbjct: 120 TLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEAR 164
>gi|332304409|ref|YP_004432260.1| peptide deformylase [Glaciecola sp. 4H-3-7+YE-5]
gi|410640997|ref|ZP_11351522.1| peptide deformylase [Glaciecola chathamensis S18K6]
gi|332171738|gb|AEE20992.1| peptide deformylase [Glaciecola sp. 4H-3-7+YE-5]
gi|410139357|dbj|GAC09709.1| peptide deformylase [Glaciecola chathamensis S18K6]
Length = 169
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ + D +K +I +M ETM GIGLAA+Q+++HK++++
Sbjct: 1 MAILDVLRFPDERLRTVAAPVEKIDGTIKTLISDMLETMKDENGIGLAATQINVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + QVFINP+I + I EGCLS+P + K++R++ I V+AL+ G F
Sbjct: 61 IDVSEKQDNPQVFINPEI-THMDGTTISEEGCLSVPNNYAKVERAETITVNALDENGDAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI K K +
Sbjct: 120 TLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEAR 164
>gi|117620047|ref|YP_854786.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561454|gb|ABK38402.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 170
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ F L+ I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N V INP+II + I EGCLS+PG + R++ ++V AL+ GK F
Sbjct: 61 IDVSENREDPLVLINPEIIEQAGSTGI-EEGCLSVPGSRALVPRAEWVKVRALDRHGKAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K ++
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165
>gi|49473752|ref|YP_031794.1| peptide deformylase [Bartonella quintana str. Toulouse]
gi|81696103|sp|Q6G1G6.1|DEF_BARQU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|49239255|emb|CAF25576.1| Polypeptide deformylase [Bartonella quintana str. Toulouse]
Length = 176
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P+I PD L+++++P+ D ++K+ +M ETMY A G+GLAA Q+ I ++L+
Sbjct: 1 MPIKPLIILPDPILREVSKPVEHVDSTIQKLADDMLETMYDAQGVGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+N Q V INP+I+W S E+ I EGCLS+P + +I+R KR+ V + EGK
Sbjct: 61 IDVSRNETQKNPLVIINPEILWLSDERNICKEGCLSIPEYYTEIERPKRLCVRYQDREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+ LLA CLQHEIDHLNG++FI+++S K++ +I+KF K K+
Sbjct: 121 QTEIEADHLLATCLQHEIDHLNGRLFIDHISKIKRDMVIRKFKKRAKE 168
>gi|343507206|ref|ZP_08744648.1| peptide deformylase [Vibrio ichthyoenteri ATCC 700023]
gi|342800226|gb|EGU35766.1| peptide deformylase [Vibrio ichthyoenteri ATCC 700023]
Length = 169
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++KI+ +M ETMY GIGLAA+QVD+H+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+II E I EGCLS+PG + R+ + V ALN +G+ F
Sbjct: 61 IDISETRDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 SFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAK 161
>gi|262040754|ref|ZP_06013985.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259041898|gb|EEW42938.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 169
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+K+AEP+ E + +++I+ +M +TMY GIGLAA+QVDIH+++++
Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ E I EGCLS+P + R++++++ AL+ K F
Sbjct: 61 IDVSENREEQLVLINPEMLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNDKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|332533677|ref|ZP_08409536.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
gi|332036841|gb|EGI73302.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
Length = 168
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ +A+ + + D +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MARLEVLRFPDERLRTVAKDVVQVDDTVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ V INP+II + EGCLS+P + K+ R++ + V ALN G+ F
Sbjct: 61 IDVSEERNEPLVLINPQIIKKDG-STVSEEGCLSVPNSYAKVDRAETVTVAALNENGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 VLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164
>gi|269962644|ref|ZP_06176989.1| peptide deformylase [Vibrio harveyi 1DA3]
gi|269832567|gb|EEZ86681.1| peptide deformylase [Vibrio harveyi 1DA3]
Length = 193
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ E ++KI+ +M ETMY GIGLAA+QVD+HK++++
Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHKRIVV 81
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK +
Sbjct: 82 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEY 140
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 141 TFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAK 182
>gi|403529999|ref|YP_006664528.1| peptide deformylase [Bartonella quintana RM-11]
gi|403232071|gb|AFR25814.1| peptide deformylase [Bartonella quintana RM-11]
Length = 176
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P++ PD L+++++P+ D ++K+ +M ETMY A G+GLAA Q+ I ++L+
Sbjct: 1 MPIKPLVILPDPILREVSKPVEHVDSTIQKLADDMLETMYDAQGVGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+N Q V INP+I+W S E+ I EGCLS+P + +I+R KR+ V + EGK
Sbjct: 61 IDVSRNETQKNPLVIINPEILWLSDERNICKEGCLSIPEYYTEIERPKRLCVRYQDREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+ LLA CLQHEIDHLNG++FI+++S K++ +I+KF K K+
Sbjct: 121 QTEIEADHLLATCLQHEIDHLNGRLFIDHISKIKRDMVIRKFKKRAKE 168
>gi|422017027|ref|ZP_16363600.1| peptide deformylase [Providencia burhodogranariea DSM 19968]
gi|414091196|gb|EKT52887.1| peptide deformylase [Providencia burhodogranariea DSM 19968]
Length = 174
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 120/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+ IA+P+ + D ++ II +M ETMY GIGLAA+QV+IH+++++
Sbjct: 1 MSVLNVLHYPDERLRTIAKPVEKIDAEIQHIIDDMFETMYDEEGIGLAATQVNIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP+++ S E I EGCLS+P + R++++++ AL+ G+ F
Sbjct: 61 IDVSETRDERLVLINPELLDKSGETGI-EEGCLSIPEQHGFVPRAEKVKIRALDYNGESF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI ++ K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQRVEK 161
>gi|381395652|ref|ZP_09921347.1| peptide deformylase [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379328531|dbj|GAB56480.1| peptide deformylase [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 169
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+ L ++ +PD RL+ +A+ + D +++ ++ +M ETM GIGLAA+QV++HK++++
Sbjct: 1 MSTLEVLTFPDERLRTVAKHVPAVDKSIQTLVKDMFETMKEEKGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + N+ VFINP+II S I EGCLS+P + K+ R++ ++V ALN +G+ F
Sbjct: 61 MDVSSDQNEPYVFINPEIIEKSG-SIISEEGCLSVPDNYAKVDRAEFVKVQALNEKGENF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A GLLA+C+QHE+DHL GK+F++YLS K++RI KK K +
Sbjct: 120 ELEAHGLLAVCIQHELDHLQGKLFVDYLSPLKRDRIKKKLEKEAR 164
>gi|395785421|ref|ZP_10465153.1| peptide deformylase [Bartonella tamiae Th239]
gi|423717680|ref|ZP_17691870.1| peptide deformylase [Bartonella tamiae Th307]
gi|395424968|gb|EJF91139.1| peptide deformylase [Bartonella tamiae Th239]
gi|395427080|gb|EJF93196.1| peptide deformylase [Bartonella tamiae Th307]
Length = 176
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 113/164 (68%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ PI+ PD L+ +++P+ D L+K+ +M ETMY A GIGLAA Q+ +LL+
Sbjct: 1 MSIKPIVLLPDPVLRTLSKPVERVDQELQKLADDMLETMYEAPGIGLAAIQIGEPLRLLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K ++ Q+FINP++IW S E+ +Y EGCLS+P + +++R K+I V LN EG
Sbjct: 61 IDVAKKDDPKNPQIFINPEVIWTSDERNVYEEGCLSIPDYYAEVERPKKIGVRYLNREGT 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLA CLQHEIDHLNG +FI+++S K++ +I+KF K
Sbjct: 121 QCTCEADDLLATCLQHEIDHLNGVLFIDHISKLKRDMVIRKFKK 164
>gi|422406596|ref|ZP_16483621.1| peptide deformylase, partial [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881833|gb|EGH15982.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 136
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 102/132 (77%)
Query: 34 NMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCL 93
+M ETMY A GIGLAA+QV++HK+++++D+S++ ++ VFINP+I + E Y EGCL
Sbjct: 2 DMFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPMVFINPEIEKLTDEMDQYQEGCL 61
Query: 94 SLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKK 153
S+PG + + R +++RV AL+ GK +E++AEGLLAIC+QHE DHLNGK+F++YLSN K+
Sbjct: 62 SVPGFYENVDRPQKVRVKALDRNGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKR 121
Query: 154 ERIIKKFLKNIK 165
+RI KK K K
Sbjct: 122 DRIKKKLEKQHK 133
>gi|359455369|ref|ZP_09244601.1| peptide deformylase [Pseudoalteromonas sp. BSi20495]
gi|414071411|ref|ZP_11407380.1| peptide deformylase [Pseudoalteromonas sp. Bsw20308]
gi|358047599|dbj|GAA80850.1| peptide deformylase [Pseudoalteromonas sp. BSi20495]
gi|410806131|gb|EKS12128.1| peptide deformylase [Pseudoalteromonas sp. Bsw20308]
Length = 168
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ IA+ + + D +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MARLEVLRFPDERLRTIAKEVAQVDDTVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP+II I EGCLS+P + K+ R++ + V ALN G+ F
Sbjct: 61 IDVSEERDEPLVLINPQIIKKDG-STISEEGCLSVPNSYAKVDRAETVTVSALNENGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 VLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164
>gi|114561212|ref|YP_748725.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
gi|114332505|gb|ABI69887.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
Length = 188
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 113/165 (68%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ IA+P+T+F L+ I NM ETMY GIGLAA+QVD H+QL++
Sbjct: 19 MPLLNVLRFPDERLRTIAQPVTDFGPQLQTQIDNMLETMYLEKGIGLAATQVDFHQQLIV 78
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +FINP+I+ S + EGCLS+PGI+ K+ R++ + + AL+ GK F
Sbjct: 79 MDLQDEVERPTIFINPQIVASSGDL-ANEEGCLSVPGIYAKVDRAEFVTLKALDRHGKEF 137
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ L AIC+QHE+DHL GK+F++YLS K++RI K K +
Sbjct: 138 IVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEAR 182
>gi|420377552|ref|ZP_14877140.1| peptide deformylase [Shigella flexneri 1235-66]
gi|391295093|gb|EIQ53263.1| peptide deformylase [Shigella flexneri 1235-66]
Length = 164
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 118/157 (75%), Gaps = 1/157 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++D+S+
Sbjct: 1 MLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE 60
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N ++ V INP+++ E I EGCLS+P + R++++++ AL+ +GK FE+ A+
Sbjct: 61 NRDERLVLINPELLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAD 119
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 GLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 156
>gi|126172288|ref|YP_001048437.1| peptide deformylase [Shewanella baltica OS155]
gi|152998582|ref|YP_001364263.1| peptide deformylase [Shewanella baltica OS185]
gi|160873157|ref|YP_001552473.1| peptide deformylase [Shewanella baltica OS195]
gi|217971247|ref|YP_002355998.1| peptide deformylase [Shewanella baltica OS223]
gi|378706393|ref|YP_005271287.1| peptide deformylase [Shewanella baltica OS678]
gi|386338965|ref|YP_006035331.1| Peptide deformylase [Shewanella baltica OS117]
gi|418022972|ref|ZP_12661958.1| Peptide deformylase [Shewanella baltica OS625]
gi|125995493|gb|ABN59568.1| peptide deformylase [Shewanella baltica OS155]
gi|151363200|gb|ABS06200.1| peptide deformylase [Shewanella baltica OS185]
gi|160858679|gb|ABX47213.1| peptide deformylase [Shewanella baltica OS195]
gi|217496382|gb|ACK44575.1| peptide deformylase [Shewanella baltica OS223]
gi|315265382|gb|ADT92235.1| peptide deformylase [Shewanella baltica OS678]
gi|334861366|gb|AEH11837.1| Peptide deformylase [Shewanella baltica OS117]
gi|353537974|gb|EHC07530.1| Peptide deformylase [Shewanella baltica OS625]
Length = 170
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 112/165 (67%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ A PITEF+ L+ I +M ETMY GIGLAA+QVD HKQL++
Sbjct: 1 MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +VFINP+II S + EGCLS+PGI+ K+ R++ + V AL+ G F
Sbjct: 61 MDLQDEVERPKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ L AIC+QHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 120 IVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAR 164
>gi|194367357|ref|YP_002029967.1| peptide deformylase [Stenotrophomonas maltophilia R551-3]
gi|238693439|sp|B4SKH7.1|DEF_STRM5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|194350161|gb|ACF53284.1| peptide deformylase [Stenotrophomonas maltophilia R551-3]
Length = 170
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 114/168 (67%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A I ++ ++++ NM +TMY A GIGLAA+QVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAALIDAAEVTTPAFQELVDNMFQTMYDAPGIGLAATQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N+ VFINP+I+ + +Y EGCLS+PGIF + R+ I V L+ +G
Sbjct: 61 FMVIDVSEEKNEPHVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDRDG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ A +LA C+QHE+DHL+GK+FI+YLS K+E + KK K K
Sbjct: 120 QQQELEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167
>gi|242237892|ref|YP_002986073.1| peptide deformylase [Dickeya dadantii Ech703]
gi|242129949|gb|ACS84251.1| peptide deformylase [Dickeya dadantii Ech703]
Length = 170
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++++PD RL+ A+P+ E + ++++I+ +M +TMY GIGLAA+QV+IH+++++
Sbjct: 1 MSVLQVLHFPDERLRITAKPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVNIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+++ S + I EGCLS+P + R++R+++ AL+ +GK F
Sbjct: 61 IDVSEERDQRLVLINPELLEKSGDTGI-EEGCLSIPETRALVPRAERVKIRALDKDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELETDGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEK 161
>gi|160896282|ref|YP_001561864.1| peptide deformylase [Delftia acidovorans SPH-1]
gi|333917291|ref|YP_004491023.1| peptide deformylase [Delftia sp. Cs1-4]
gi|160361866|gb|ABX33479.1| peptide deformylase [Delftia acidovorans SPH-1]
gi|162662271|gb|EDQ49167.1| predicted protein [Physcomitrella patens subsp. patens]
gi|333747491|gb|AEF92668.1| Peptide deformylase [Delftia sp. Cs1-4]
Length = 170
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 121/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++LPI+ YPD RL +A+P+ + D +++++ +M TMY A G+GLAA+QV++H+++++
Sbjct: 1 MSILPILCYPDPRLHTVAKPVAKVDDRIRQLVQDMYATMYDAQGVGLAATQVNVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ INP+++W S+E Q+ EGCLS+PGI++ ++RS I+V AL+ G
Sbjct: 61 VDVSEGRDEPFALINPELLWASEETQLGEEGCLSVPGIYDGVERSTAIKVKALDENGNER 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
I AEG AIC+QHE+DHL GK+F+EYLS K+ RI K LK K+
Sbjct: 121 IIEAEGFKAICIQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQKQ 166
>gi|401871479|pdb|4AZ4|A Chain A, E.Coli Deformylase With Co(Ii) And Hydrosulfide
Length = 186
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 121/161 (75%), Gaps = 1/161 (0%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++
Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 DISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK FE
Sbjct: 61 DVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAI +QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 LEADGLLAIXIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 160
>gi|383280362|pdb|4AL3|A Chain A, Peptide Deformylase (Co-Form) With Mercaptoethanol
Length = 186
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 121/161 (75%), Gaps = 1/161 (0%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++
Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 DISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
D+S+N ++ V INP+++ S E I EG LS+P + R++++++ AL+ +GK FE
Sbjct: 61 DVSENRDERLVLINPELLEKSGETGI-EEGXLSIPEQRALVPRAEKVKIRALDRDGKPFE 119
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 160
>gi|344943065|ref|ZP_08782352.1| Peptide deformylase [Methylobacter tundripaludum SV96]
gi|344260352|gb|EGW20624.1| Peptide deformylase [Methylobacter tundripaludum SV96]
Length = 168
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ +PD RL+K A + D +KK++ +M ETMY + G+GLAA+QV++H+++++
Sbjct: 1 MSILSILEFPDERLRKKAAIVKTVDDKIKKLVDDMLETMYESHGVGLAATQVNVHQRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ + INP+II K+ EGCLS+PG F K++R++ I V AL+ EG+ F
Sbjct: 61 IDVSEEKDAPLCLINPEIIEKDGVKE-SEEGCLSVPGFFEKVERAEHIIVKALDREGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A LLA+C+QHE+DHL+GK+F++Y+S K++RI KK K
Sbjct: 120 ELSARDLLAVCVQHELDHLDGKLFVDYISPLKRQRIKKKLEK 161
>gi|373951656|ref|ZP_09611617.1| Peptide deformylase [Shewanella baltica OS183]
gi|386322526|ref|YP_006018643.1| Peptide deformylase [Shewanella baltica BA175]
gi|333816671|gb|AEG09337.1| Peptide deformylase [Shewanella baltica BA175]
gi|373888256|gb|EHQ17148.1| Peptide deformylase [Shewanella baltica OS183]
Length = 170
Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 112/165 (67%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ A PITEF+ L+ I +M ETMY GIGLAA+QVD HKQL++
Sbjct: 1 MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +VFINP+II S + EGCLS+PGI+ K+ R++ + V AL+ G F
Sbjct: 61 MDLQDEVERHKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ L AIC+QHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 120 IVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAR 164
>gi|334125891|ref|ZP_08499875.1| peptide deformylase [Enterobacter hormaechei ATCC 49162]
gi|401765475|ref|YP_006580482.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|449472087|ref|XP_004153493.1| PREDICTED: peptide deformylase-like [Cucumis sativus]
gi|333386291|gb|EGK57508.1| peptide deformylase [Enterobacter hormaechei ATCC 49162]
gi|400177009|gb|AFP71858.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 169
Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+ +AEP+ E + +++I+ +M +TMY GIGLAA+QVDIHK++++
Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|295096931|emb|CBK86021.1| peptide deformylase [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 169
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+ +AEP+ E + +++I+ +M +TMY GIGLAA+QVDIHK++++
Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSENRDERLVLINPEMLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|402778719|ref|YP_006634265.1| Peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|402539673|gb|AFQ63822.1| Peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae 1084]
Length = 164
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 117/157 (74%), Gaps = 1/157 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ PD RL+K+AEP+ E + +++I+ +M +TMY GIGLAA+QVDIH++++++D+S+
Sbjct: 1 MLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSE 60
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N + V INP+++ E I EGCLS+P + R++++++ AL+ +GK FE+ A+
Sbjct: 61 NREEQLVLINPEMLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAD 119
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 GLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 156
>gi|27364480|ref|NP_760008.1| peptide deformylase [Vibrio vulnificus CMCP6]
gi|31076651|sp|Q8DDE3.1|DEF1_VIBVU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|27360599|gb|AAO09535.1| peptide deformylase [Vibrio vulnificus CMCP6]
Length = 170
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 114/162 (70%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ N+ V INP+I+ E I EGCLS+PG + R+ + V AL+ +G F
Sbjct: 61 IDISESRNEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGHEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAK 161
>gi|417619890|ref|ZP_12270296.1| peptide deformylase [Escherichia coli G58-1]
gi|345371981|gb|EGX03949.1| peptide deformylase [Escherichia coli G58-1]
Length = 164
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 119/157 (75%), Gaps = 1/157 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++D+S+
Sbjct: 1 MLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE 60
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK FE+ A+
Sbjct: 61 NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKICALDRDGKPFELEAD 119
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 GLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 156
>gi|253991650|ref|YP_003043006.1| peptide deformylase [Photorhabdus asymbiotica]
gi|253783100|emb|CAQ86265.1| peptide deformylase [Photorhabdus asymbiotica]
Length = 170
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I++YPD RL+ IA P+ + D ++ I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MPILQILHYPDERLRTIATPVEKVDAKIQSIVDDMFETMYAEDGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S N+ V INP+++ + + I EGCLS+P + R++++++ AL+ G+ F
Sbjct: 61 IDVSDTRNERLVLINPELLEKNGKTGI-EEGCLSIPEQRALVSRAEKVKIRALDYNGQSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELQADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEK 161
>gi|220933382|ref|YP_002512281.1| peptide deformylase [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|254767610|sp|B8GU11.1|DEF_THISH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|219994692|gb|ACL71294.1| peptide deformylase [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 178
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+++PD RL+K A P+ + D +++++ +M ETMY A GIGLAA+QV++ +Q+++
Sbjct: 1 MAKLEILHFPDPRLRKRAVPVDKVDDEIRRLVDDMFETMYDAPGIGLAATQVNVQRQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+NN+Q VFINP+I+ E+++ EGCLS+PG F ++R+ R+RV AL+ G+ F
Sbjct: 61 IDVSENNDQPLVFINPEILDRVGEEEM-QEGCLSVPGYFETVRRADRVRVRALDRNGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ +GLLA+C+QHE+DHL+GK+F++YLS K+ RI KK K
Sbjct: 120 ELETDGLLAVCIQHEMDHLDGKLFVDYLSPLKRNRIQKKLEK 161
>gi|118594097|ref|ZP_01551444.1| peptide deformylase [Methylophilales bacterium HTCC2181]
gi|118439875|gb|EAV46502.1| peptide deformylase [Methylophilales bacterium HTCC2181]
Length = 165
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD L K+A+ + D KK+I +M ETMY + GIGLAA+QV+ H+++++
Sbjct: 1 MAILTILTYPDPNLHKVAKRVINVDEVHKKLIKDMAETMYGSNGIGLAATQVNFHERIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS + N L INP+II + KQ Y EGCLS+PG + ++R I+V +L+ GK F
Sbjct: 61 IDISDDKNDLLTLINPEIIQ-KEGKQEYEEGCLSVPGFYEAVERFDYIKVQSLDNRGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
EI A GLL++C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 120 EIEAHGLLSVCIQHEMDHLEGKVFVEYLSPLKQNRI 155
>gi|77166461|ref|YP_344986.1| peptide deformylase [Nitrosococcus oceani ATCC 19707]
gi|254435308|ref|ZP_05048815.1| peptide deformylase [Nitrosococcus oceani AFC27]
gi|123593232|sp|Q3J6U0.1|DEF_NITOC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|76884775|gb|ABA59456.1| peptide deformylase [Nitrosococcus oceani ATCC 19707]
gi|207088419|gb|EDZ65691.1| peptide deformylase [Nitrosococcus oceani AFC27]
Length = 167
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 112/163 (68%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I++YPD RL++ A+P+ D ++KK+ +M ETMY A GIGLAA QV++ KQ+++
Sbjct: 1 MAILNILHYPDPRLRRKAQPVAAVDKSIKKLADDMLETMYQAPGIGLAAVQVNVPKQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ + V INP+I+ + + EGCLS+P IF + R+ I VH L+ EG+
Sbjct: 61 IDISEDKSSPLVLINPEIVARQGKAE-SEEGCLSVPEIFEPVTRAAEITVHYLDREGQKQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ + LLA C+QHE+DHL GK+FI+Y S K++RI KK K
Sbjct: 120 ELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKR 162
>gi|260774554|ref|ZP_05883467.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
gi|260610460|gb|EEX35666.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
Length = 170
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 118/166 (71%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + +Q V INP+II E I EGCLS+PG + R+ + V ALN +G+ +
Sbjct: 61 IDVSDSRDQPMVLINPQIIEKRGEDGI-EEGCLSVPGSRALVPRAAEVTVKALNRDGEEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLAIC+QHE+DHL GK+F++YLS K++R IK+ L+ IK+
Sbjct: 120 TFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKR-IKEKLEKIKR 164
>gi|359435205|ref|ZP_09225428.1| peptide deformylase [Pseudoalteromonas sp. BSi20652]
gi|359442175|ref|ZP_09232049.1| peptide deformylase [Pseudoalteromonas sp. BSi20429]
gi|392535953|ref|ZP_10283090.1| peptide deformylase [Pseudoalteromonas arctica A 37-1-2]
gi|357918106|dbj|GAA61677.1| peptide deformylase [Pseudoalteromonas sp. BSi20652]
gi|358035958|dbj|GAA68298.1| peptide deformylase [Pseudoalteromonas sp. BSi20429]
Length = 167
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ IA+ + + D +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MARLEVLRFPDERLRTIAKDVAQVDDTVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP+II + EGCLS+P + K+ R++ + V ALN G+ F
Sbjct: 61 IDVSEERDEPLVLINPQIIKKDG-STVSEEGCLSVPNSYAKVDRAETVTVAALNENGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 VLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164
>gi|83859278|ref|ZP_00952799.1| polypeptide deformylase [Oceanicaulis sp. HTCC2633]
gi|83852725|gb|EAP90578.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633]
Length = 175
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 114/166 (68%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+ PD RLK +++P+ D L+ ++ +M ETMY A GIGLAA QV + K++++
Sbjct: 1 MAIREILTVPDPRLKLVSKPVDAVDDALRALMDDMVETMYAADGIGLAAIQVGVDKRVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S N + ++NP I +++ + Y EGCLS+P +F+ ++R K+++V L+ +G+
Sbjct: 61 MDLSDERNDPRYYVNPVITPLTEDLKPYQEGCLSVPDVFDSVERPKKVKVEYLDYDGEKR 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E IAE L A+C+QHE+DHL G +FI+YLS K++R +KK K +K+
Sbjct: 121 EEIAEDLFAVCIQHEMDHLEGVVFIDYLSRLKRDRAVKKVQKLVKQ 166
>gi|224585201|ref|YP_002639000.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|383498052|ref|YP_005398741.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|417329204|ref|ZP_12114114.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|417336808|ref|ZP_12119160.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|417344163|ref|ZP_12124567.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|417352643|ref|ZP_12129802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417361077|ref|ZP_12135049.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|417376216|ref|ZP_12145463.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|417386184|ref|ZP_12150952.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417390025|ref|ZP_12153633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|417430423|ref|ZP_12161120.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|417470134|ref|ZP_12166364.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|417484961|ref|ZP_12172319.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|417513913|ref|ZP_12177844.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|417520974|ref|ZP_12182773.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|417534325|ref|ZP_12188120.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|417536782|ref|ZP_12189838.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|224469729|gb|ACN47559.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|353565581|gb|EHC31318.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|353565974|gb|EHC31598.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353566637|gb|EHC32062.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353585028|gb|EHC44988.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|353593854|gb|EHC51520.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|353603998|gb|EHC58919.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353615126|gb|EHC66747.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353620009|gb|EHC70245.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|353625907|gb|EHC74578.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353633979|gb|EHC80659.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353635367|gb|EHC81699.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353642583|gb|EHC86995.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353658971|gb|EHC99010.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|353669635|gb|EHD06480.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|357954511|gb|EHJ80674.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|380464873|gb|AFD60276.1| polypeptide deformylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
Length = 164
Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 118/157 (75%), Gaps = 1/157 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++D+S+
Sbjct: 1 MLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSE 60
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +G FE+ A+
Sbjct: 61 NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEAD 119
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 GLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 156
>gi|296104994|ref|YP_003615140.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|392980962|ref|YP_006479550.1| peptide deformylase [Enterobacter cloacae subsp. dissolvens SDM]
gi|295059453|gb|ADF64191.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|392326895|gb|AFM61848.1| peptide deformylase [Enterobacter cloacae subsp. dissolvens SDM]
Length = 169
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+ +AEP+ E + +++I+ +M +TMY GIGLAA+QVDIHK++++
Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ S E I EGCLS+P + R++++++ AL+ EG F
Sbjct: 61 IDVSENRDGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|222147432|ref|YP_002548389.1| peptide deformylase [Agrobacterium vitis S4]
gi|221734422|gb|ACM35385.1| peptide deformylase [Agrobacterium vitis S4]
Length = 176
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT PII PD L+++++PI D +L+++I +M ETMY A GIGLAA Q+ + ++LL+
Sbjct: 5 MTTKPIIILPDPLLREVSQPIERIDADLERLIDDMLETMYDAPGIGLAAVQIAVPRRLLV 64
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+SK Q VFINP+II S+ + Y EGCLS+P + +++R + V +L+ GK
Sbjct: 65 IDVSKEGEDKQPLVFINPEIIGSSQARSTYEEGCLSIPDYYAEVERPAAVTVKSLDRHGK 124
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERII 157
I A+GLLA CLQHEIDHLNG +FI+++S K+E +I
Sbjct: 125 EQVIEADGLLATCLQHEIDHLNGTLFIDHISRLKREMVI 163
>gi|94676503|ref|YP_588858.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
gi|123384127|sp|Q1LT56.1|DEF_BAUCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|94219653|gb|ABF13812.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
Length = 167
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 117/160 (73%), Gaps = 1/160 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LLPI+YYPD RL++I++P+ + + ++ +I+++M +TMYH GIGLAA QV+I+ +++
Sbjct: 1 MSLLPILYYPDHRLRQISKPVNKINNSIYRIVYDMFDTMYHKNGIGLAAPQVNINLNIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N Q V INP+++ S E I+ EGCLS+P + R+K I+V AL++ G F
Sbjct: 61 IDVSENKEQRLVLINPELLAKSGETGIH-EGCLSIPEQHGFVPRAKNIKVRALDLNGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKF 160
+ L AIC+QHE+DHL GK+FI+YLS K++R++KK
Sbjct: 120 NLETNDLQAICIQHEMDHLVGKLFIDYLSPLKRQRLLKKM 159
>gi|444428410|ref|ZP_21223743.1| peptide deformylase [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444238359|gb|ELU49969.1| peptide deformylase [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 172
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ E ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK +
Sbjct: 61 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAK 161
>gi|320154884|ref|YP_004187263.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
gi|319930196|gb|ADV85060.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
Length = 170
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 114/162 (70%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ N+ V INP+I+ E I EGCLS+PG + R+ + V AL+ +G F
Sbjct: 61 IDISESRNEPMVLINPEILEKHGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGHEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAK 161
>gi|262273080|ref|ZP_06050897.1| peptide deformylase [Grimontia hollisae CIP 101886]
gi|262222836|gb|EEY74144.1| peptide deformylase [Grimontia hollisae CIP 101886]
Length = 170
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVESVTPEIQKIVDDMLETMYQEDGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+II E I EGCLS+PG + R+ + V AL+ +G +
Sbjct: 61 IDISETRDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRASEVTVKALDRDGNEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K++R IK+ L+ IK+
Sbjct: 120 QFEADDLLAICVQHELDHLEGKLFVDYLSPLKQQR-IKQKLEKIKR 164
>gi|254229999|ref|ZP_04923400.1| peptide deformylase [Vibrio sp. Ex25]
gi|269966999|ref|ZP_06181069.1| peptide deformylase [Vibrio alginolyticus 40B]
gi|151937501|gb|EDN56358.1| peptide deformylase [Vibrio sp. Ex25]
gi|269828393|gb|EEZ82657.1| peptide deformylase [Vibrio alginolyticus 40B]
Length = 203
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++KI+ +M ETMY GIGLAA+QVDIHK++++
Sbjct: 32 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 91
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK F
Sbjct: 92 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEF 150
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 151 TFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAK 192
>gi|384423404|ref|YP_005632762.1| Peptide deformylase [Vibrio cholerae LMA3984-4]
gi|327482957|gb|AEA77364.1| Peptide deformylase [Vibrio cholerae LMA3984-4]
Length = 169
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 118/166 (71%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 61 IDISENRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 120 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 164
>gi|387769762|ref|ZP_10125962.1| peptide deformylase [Pasteurella bettyae CCUG 2042]
gi|386906151|gb|EIJ70895.1| peptide deformylase [Pasteurella bettyae CCUG 2042]
Length = 171
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+L ++ YPD RLK IAEP+TEF+ L+ I NM +TMY GIGLAA+QV++HK+++
Sbjct: 1 MTVLNVLIYPDERLKTIAEPVTEFNDELQTFIDNMFDTMYQEEGIGLAATQVNVHKRVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI+ + VFINP+++ E I CLSLPG + R +++ V ALN +G+ F
Sbjct: 61 IDITGEKTEQLVFINPELLDGEGETGIEEG-CLSLPGFRGYVPRKEKVTVKALNRQGQEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F +YLS K+ RI +K +K
Sbjct: 120 TLHADGLLAICIQHEIDHLNGIVFADYLSPLKRNRIKEKLVK 161
>gi|209886650|ref|YP_002290507.1| peptide deformylase [Oligotropha carboxidovorans OM5]
gi|337739837|ref|YP_004631565.1| peptide deformylase Def [Oligotropha carboxidovorans OM5]
gi|386028855|ref|YP_005949630.1| peptide deformylase Def [Oligotropha carboxidovorans OM4]
gi|229487488|sp|B6JJP8.1|DEF_OLICO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|209874846|gb|ACI94642.1| peptide deformylase [Oligotropha carboxidovorans OM5]
gi|336093923|gb|AEI01749.1| peptide deformylase Def [Oligotropha carboxidovorans OM4]
gi|336097501|gb|AEI05324.1| peptide deformylase Def [Oligotropha carboxidovorans OM5]
Length = 171
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + II PD RL++++EP+ + ++ + +M ETMY A GIGLAA QV + +L+
Sbjct: 1 MAIREIISIPDKRLRRVSEPVEKITSEVRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 60
Query: 61 LDISKNNNQL--QVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K + +VFINP+I+ S++ +Y EGCLS+P + +++R +RV +++EG+
Sbjct: 61 MDLAKKEGESAPRVFINPEILSKSEDIAVYEEGCLSIPEYYEEVERPASVRVRFMDLEGE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E AEGL A C+QHEIDHLNG +FI+YLS K++R++KKF K K
Sbjct: 121 VHEEDAEGLFATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAK 167
>gi|359787046|ref|ZP_09290117.1| peptide deformylase [Halomonas sp. GFAJ-1]
gi|359295696|gb|EHK59959.1| peptide deformylase [Halomonas sp. GFAJ-1]
Length = 170
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 117/165 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ +PD RL+ A + D +++++ +M ETMY A GIGLAA+Q+DIH+++++
Sbjct: 1 MAKLPILEFPDERLRTKAVAVETVDDEVRQLVDDMLETMYDARGIGLAATQIDIHRRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S +N+Q V INP+ +EK+ +EGCLS+P + ++ R +++++AL+ G+ +
Sbjct: 61 MDVSDDNSQPLVLINPRYEPMGEEKEPLSEGCLSIPEYYAEVPRFLKVKLNALDRNGEPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLA C+QHE DHL G +F++YLS K++R+++K K K
Sbjct: 121 ELEADGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRVLRKMQKRHK 165
>gi|291333895|gb|ADD93575.1| peptide deformylase [uncultured marine bacterium
MedDCM-OCT-S04-C385]
Length = 171
Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 118/167 (70%), Gaps = 1/167 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ +PD RL+ A+P+ E K++I NM TMY + GIGLAA+QVD H+++L+
Sbjct: 1 MKLLKILEFPDPRLRTKAKPVQEVTNVHKELIDNMIHTMYESKGIGLAATQVDFHERILV 60
Query: 61 LDISKNNNQLQVFINPKI-IWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+DIS+ + QVFINP++ I KEK Y EGCLS+PG + +I R ++I+V L+ +GK
Sbjct: 61 IDISEERDDPQVFINPEVEILNKKEKSGYEEGCLSVPGFYEEIIRPEKIKVTYLDRDGKK 120
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++ EGLLA+ +QHEIDHL G + ++Y+S+ K++RI +K K+ K+
Sbjct: 121 QTLMPEGLLAVVIQHEIDHLEGILMVDYISSIKRQRIKQKLQKSAKE 167
>gi|421911830|ref|ZP_16341575.1| Peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421914245|ref|ZP_16343894.1| Peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|410114032|emb|CCM84200.1| Peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410123393|emb|CCM86519.1| Peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
Length = 164
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ PD RL+K+AEP+ E + +++I+ +M +TMY GIGLAA+QVDIH++++++D+S+
Sbjct: 1 MLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSE 60
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N + V INP+++ E I EGCLS+P + R++++++ AL +GK FE+ A+
Sbjct: 61 NREEQLVLINPEMLEKDGETGI-EEGCLSIPEQRALVPRAEKVKIRALERDGKPFELEAD 119
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 GLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 156
>gi|424048348|ref|ZP_17785901.1| peptide deformylase [Vibrio cholerae HENC-03]
gi|408882587|gb|EKM21393.1| peptide deformylase [Vibrio cholerae HENC-03]
Length = 172
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ E ++KI+ +M ETMY GIGLAA+QVD+HK++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V AL+ GK +
Sbjct: 61 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGKEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAK 161
>gi|292493779|ref|YP_003529218.1| peptide deformylase [Nitrosococcus halophilus Nc4]
gi|291582374|gb|ADE16831.1| peptide deformylase [Nitrosococcus halophilus Nc4]
Length = 167
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I++YPD RL++ A+P+ D ++KK+ +M ETMY A GIGLAA QV++ K++++
Sbjct: 1 MAILNILHYPDPRLRRKAQPVATVDESIKKLADDMLETMYQAPGIGLAAIQVNVPKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ + V INP+I+ + K +EGCLS+P IF + R+ I V L+ EG+
Sbjct: 61 IDISEDKSSPLVLINPEIVA-RRGKAESDEGCLSVPEIFEPVTRAAEITVRYLDREGQEQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ A+ LLA C+QHE+DHL GK+FI+YLS K++RI KK K
Sbjct: 120 ELEAQELLATCIQHELDHLEGKLFIDYLSTLKRQRIRKKVEKR 162
>gi|389799086|ref|ZP_10202090.1| peptide deformylase [Rhodanobacter sp. 116-2]
gi|388443711|gb|EIL99848.1| peptide deformylase [Rhodanobacter sp. 116-2]
Length = 169
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ +PD RL+ A P++ FD LK+ + +M ETMY A G+GLAA+QV++H+++L+
Sbjct: 1 MSILSILEFPDPRLRTRAAPVSVFDAKLKQFVADMFETMYAANGVGLAATQVNVHQRVLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ V IN +I+ Q+Y EGCLS PG++ + R+ R+RV A +++GK
Sbjct: 61 IDMSEERNQPLVLINAEIVEKDG-AQVYQEGCLSFPGLYADVTRALRVRVKAQDVDGKAV 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
AEG LA+ +QHE+DHL GK+F++YLS
Sbjct: 120 VHEAEGPLAVAVQHEMDHLEGKVFVDYLS 148
>gi|395788204|ref|ZP_10467779.1| peptide deformylase [Bartonella birtlesii LL-WM9]
gi|395409537|gb|EJF76125.1| peptide deformylase [Bartonella birtlesii LL-WM9]
Length = 176
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 119/169 (70%), Gaps = 4/169 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P+I PD L+K+++P+ D L+K+ +M +TMY+A G+GLAA Q+ I ++L+
Sbjct: 1 MSIKPLITLPDPILRKVSKPVDHIDSTLQKLADDMLDTMYNAQGVGLAAIQIGIPLRMLV 60
Query: 61 LDISKNN---NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D+S+++ N L V INP+I+W S E+ IY EGCLS+P + +++R KR+ V + +G
Sbjct: 61 IDVSRDDIPKNPL-VVINPEILWLSDERNIYKEGCLSIPEYYAEVERPKRLYVRYQDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
K EI + LLA CLQHEIDHLNG +FI+++S K++ +I+KF K K+
Sbjct: 120 KQTEIETDDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKFKKRAKE 168
>gi|229530168|ref|ZP_04419557.1| peptide deformylase [Vibrio cholerae 12129(1)]
gi|229332301|gb|EEN97788.1| peptide deformylase [Vibrio cholerae 12129(1)]
Length = 194
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 118/166 (71%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 26 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 86 IDISENRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 144
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 145 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 189
>gi|365540337|ref|ZP_09365512.1| peptide deformylase [Vibrio ordalii ATCC 33509]
Length = 169
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEDGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+I+ E I EGCLS+PG + R+ I V AL+ G F
Sbjct: 61 IDISENRDQPMVLINPEILEKRGEDGI-EEGCLSVPGSRALVPRAAEITVKALDRNGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 SFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIRDKLEK 161
>gi|389808842|ref|ZP_10204978.1| peptide deformylase [Rhodanobacter thiooxydans LCS2]
gi|388442425|gb|EIL98621.1| peptide deformylase [Rhodanobacter thiooxydans LCS2]
Length = 169
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 108/149 (72%), Gaps = 1/149 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ +PD RL+ A P++ FD NLK+ + +M ETMY A G+GLAA+QV++H+++L+
Sbjct: 1 MSVLSILEFPDPRLRTRAAPVSVFDANLKQFVADMFETMYAANGVGLAATQVNVHQRVLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ V IN +I+ Q+Y EGCLS PG++ + R+ +++V A + +GK F
Sbjct: 61 IDMSEERNQPLVLINAEIVAKDG-AQVYQEGCLSFPGLYADVTRALKVKVKAQDPDGKDF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
AEG LA+ +QHE+DHL GK+F++YLS
Sbjct: 120 VYEAEGPLAVAVQHEMDHLEGKVFVDYLS 148
>gi|342903781|ref|ZP_08725586.1| Peptide deformylase [Haemophilus haemolyticus M21621]
gi|341954451|gb|EGT80931.1| Peptide deformylase [Haemophilus haemolyticus M21621]
Length = 169
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+TE + ++KII +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R ++++V AL+ +GK F
Sbjct: 61 IDVEGDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVKVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLDADGLLAICIQHEIDHLNGVLFVDYLSPLKRQRIKEKLVK 161
>gi|37681409|ref|NP_936018.1| peptide deformylase [Vibrio vulnificus YJ016]
gi|39930925|sp|Q7MGK6.1|DEF2_VIBVY RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|37200161|dbj|BAC95989.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016]
Length = 202
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 114/162 (70%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 33 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 92
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ N+ V INP+I+ E I EGCLS+PG + R+ + V AL+ +G F
Sbjct: 93 IDISESRNEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGHEF 151
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 152 TLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAK 193
>gi|167621968|ref|YP_001672262.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
gi|167351990|gb|ABZ74603.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
Length = 199
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 118/166 (71%), Gaps = 3/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL ++ +PD RL+ +A+PI EF+ L+ I +M ETMY GIGLA++QV+ H QL++
Sbjct: 30 MSLLKVLQFPDERLRTVAKPIAEFNAALQTQIDDMFETMYEEKGIGLASTQVNYHHQLIV 89
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNE-GCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+D+ + + +VFIN +I+ +K NE GCLS+PG++ K+ R++ + + AL+ +G
Sbjct: 90 MDLQDDVERPKVFINLEIV--AKSGDFCNEEGCLSVPGVYAKVDRAEFVTIKALDRDGNE 147
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
F + A+GL AICLQHE+DHL+GK+F++YLS K++RI +K K +
Sbjct: 148 FSLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAAR 193
>gi|400406431|ref|YP_006589179.1| peptide deformylase [secondary endosymbiont of Heteropsylla cubana]
gi|400364684|gb|AFP85751.1| peptide deformylase [secondary endosymbiont of Heteropsylla cubana]
Length = 175
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+YYPD RL+KIA+P+ + + + +I+ +M ETMY GIGLAA+QVDIH+ +++
Sbjct: 1 MALLKILYYPDKRLRKIAKPVIKVNKAICRIVDDMFETMYSKNGIGLAATQVDIHQLIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DISK +Q V INP I+ YS K EGCLS+P ++ + RS++++V AL+ G F
Sbjct: 61 IDISKKQDQRLVLINPTILEYSG-KISTKEGCLSIPYQYSSVSRSEKVKVKALDYYGNNF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
+ A LLAIC+QHE+DHL GK+FI+Y+S K++RI
Sbjct: 120 YLEANDLLAICIQHEMDHLIGKLFIDYISPLKRQRI 155
>gi|256823831|ref|YP_003147794.1| peptide deformylase [Kangiella koreensis DSM 16069]
gi|256797370|gb|ACV28026.1| peptide deformylase [Kangiella koreensis DSM 16069]
Length = 175
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ A+P+T+F L++ I +M ETMY A GIGLAA+QV+IHKQ +
Sbjct: 1 MAILEILEFPDPRLRTKAKPVTDFGDELQQQIDSMFETMYAAPGIGLAATQVNIHKQFFV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + ++ VFINP+I+ +++ EGCLS PG++ K++R+ I V AL+ GK F
Sbjct: 61 IDVSDDKSEPLVFINPQIVEKRGVEEM-EEGCLSFPGVYAKVQRANEIVVKALDRHGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIK 158
E+ LLA+C+QHE DH+ GK+F++YLS K+ RI K
Sbjct: 120 EMDTGELLAVCIQHENDHIEGKLFVDYLSPLKRNRIRK 157
>gi|297581920|ref|ZP_06943840.1| peptide deformylase [Vibrio cholerae RC385]
gi|297533787|gb|EFH72628.1| peptide deformylase [Vibrio cholerae RC385]
Length = 190
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ NM ETMY GIGLAA+QVDIH+++++
Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDNMLETMYAEEGIGLAATQVDIHQRIVV 81
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 82 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 140
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 141 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 185
>gi|326793337|ref|YP_004311157.1| peptide deformylase [Marinomonas mediterranea MMB-1]
gi|326544101|gb|ADZ89321.1| Peptide deformylase [Marinomonas mediterranea MMB-1]
Length = 168
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 110/156 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LP++ YPD +L+ +A+ + + ++ I +M +TMY GIGLAA+QVDIH ++++
Sbjct: 1 MAVLPVLEYPDPKLRTVAKEVEQVTPEIQAYIDDMLDTMYDESGIGLAATQVDIHLRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ N+ VFINP+ + E + EGCLS+PG + I R+ +++V AL+ +GK F
Sbjct: 61 MDHSEERNEPMVFINPEFVVLDDEPNEFQEGCLSVPGYYEHIYRAAKVKVKALDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ + L+A+C+QHEIDHL+GK+F++Y+S K+ RI
Sbjct: 121 EMEVDELMAVCVQHEIDHLDGKLFVDYISPLKRNRI 156
>gi|294678913|ref|YP_003579528.1| peptide deformylase [Rhodobacter capsulatus SB 1003]
gi|294477733|gb|ADE87121.1| peptide deformylase-2 [Rhodobacter capsulatus SB 1003]
Length = 178
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 107/165 (64%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT PI+ +PD RLKK+ +P+ D ++++ +M ETMY A G+GLAA Q+ + ++ +
Sbjct: 3 MTTRPILIHPDPRLKKLCDPVAALDDTIRQLADDMLETMYDAPGVGLAAPQIGVMSRIFV 62
Query: 61 LDISKNNN---QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D +K + V INP+I W S+EK ++ EGCLSLP + + R K +R+ L ++G
Sbjct: 63 MDCAKEKTGFPEAMVMINPEITWVSEEKNVHEEGCLSLPEQYADVTRPKEVRMRWLGLDG 122
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+M E +GL A C QHE+DHLNGK+FI++L K++ + +K K
Sbjct: 123 QMHEEQFDGLWATCAQHELDHLNGKLFIDHLGPLKRQMVTRKLEK 167
>gi|365972376|ref|YP_004953937.1| peptide deformylase [Enterobacter cloacae EcWSU1]
gi|401679002|ref|ZP_10810950.1| Def Protein [Enterobacter sp. SST3]
gi|365751289|gb|AEW75516.1| Peptide deformylase [Enterobacter cloacae EcWSU1]
gi|400213722|gb|EJO44660.1| Def Protein [Enterobacter sp. SST3]
Length = 169
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+ +AEP+ E + +++I+ +M +TMY GIGLAA+QVDIHK++++
Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSENRDGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|338972103|ref|ZP_08627481.1| peptide deformylase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234714|gb|EGP09826.1| peptide deformylase [Bradyrhizobiaceae bacterium SG-6C]
Length = 200
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 113/162 (69%), Gaps = 2/162 (1%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
II PD +L+ I++P+ + +++ ++ +M +TMY A GIGLAA QV + +L+ +D+SK
Sbjct: 35 IIILPDKQLRLISKPVEKITPDIRTLVDDMFQTMYDAPGIGLAAIQVAVPLRLITMDLSK 94
Query: 66 NNNQ--LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEII 123
+ +VFINP+I+ S E +Y EGCLS+P + +++R R+RV +++EG M E
Sbjct: 95 KEGEKEPRVFINPEILASSDELSVYEEGCLSIPEYYEEVERPARVRVRFMDLEGVMREED 154
Query: 124 AEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
AEGL A C+QHEIDHLNG +F++YLS K++R++KKF K K
Sbjct: 155 AEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAK 196
>gi|319404989|emb|CBI78592.1| polypeptide deformylase [Bartonella sp. AR 15-3]
Length = 171
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 117/169 (69%), Gaps = 4/169 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P++ PD L+++++P+ D ++K+ +M ETMY+A G+GLAA QV I ++L+
Sbjct: 1 MSIKPLVILPDPILREVSKPVEHIDPIIQKLADDMLETMYNAQGVGLAAVQVGIPLRMLV 60
Query: 61 LDISKNN---NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+DIS + N L V INP+I+W S E+ +Y EGCLS+P F +++R K +R+ N EG
Sbjct: 61 VDISPKDAPKNSL-VVINPEILWISDERSVYREGCLSIPEYFAEVERPKCLRISYKNREG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
K EI A LLA CLQHEIDHLNG +FI+++S K++ +I+KF K KK
Sbjct: 120 KQEEIEANDLLATCLQHEIDHLNGYLFIDHISKTKRDMVIRKFKKRAKK 168
>gi|441506697|ref|ZP_20988655.1| Peptide deformylase [Photobacterium sp. AK15]
gi|441425638|gb|ELR63142.1| Peptide deformylase [Photobacterium sp. AK15]
Length = 170
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + ++KI+ +M ETMY GIGLAA+QV++H+++++
Sbjct: 1 MSVLQVLTFPDERLRTVAKPVEKVTPEIQKIVDDMLETMYDEEGIGLAATQVNVHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ V INP+I E I EGCLS+PG ++R+ + V AL+ +G F
Sbjct: 61 IDLSEERNQPMVLINPEITDKRGEDGI-EEGCLSVPGARALVQRAAEVSVKALDRDGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
AE LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 TFDAEDLLAICVQHELDHLEGKLFVDYLSPLKRQRIKQKMEK 161
>gi|399044438|ref|ZP_10738086.1| peptide deformylase [Rhizobium sp. CF122]
gi|398057217|gb|EJL49191.1| peptide deformylase [Rhizobium sp. CF122]
Length = 178
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L+++++ I D + +++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 7 MTIKPLIILPDPLLRQVSKLIERVDADFQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 66
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ + Q VF+NP+I+ S E+ +Y EGCLS+P + +++R + V L+ +GK
Sbjct: 67 IDVSREGEEKQPLVFVNPEILASSDERSVYEEGCLSIPDYYAEVERPAAVTVKYLDRDGK 126
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K++ +IKKF K K
Sbjct: 127 EQTVQADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAAK 173
>gi|146329347|ref|YP_001209086.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
gi|158513298|sp|A5EWL8.1|DEF_DICNV RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146232817|gb|ABQ13795.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
Length = 181
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 113/176 (64%), Gaps = 11/176 (6%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+ +PD RL+ A+P+T FD L +I+ NM ETMYH GIGLAA QV+I ++L++
Sbjct: 1 MAIYSILIHPDPRLRLPAQPVTHFDDALAEIVQNMYETMYHFHGIGLAAPQVNIQQRLIV 60
Query: 61 LDISKNNNQLQ-----------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIR 109
+D+ + + + V +NP+I+ S+E Q Y EGCLSLP + + R I
Sbjct: 61 MDVPQRSAEEGEKAEQIPSDKLVLVNPEIVQRSEECQDYEEGCLSLPNQYALVTRPANIT 120
Query: 110 VHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
V +I G E A+GLL++C+QHEIDHLNG +FI++LS K+ER+ KK K++K
Sbjct: 121 VRYQDITGATQERAAQGLLSVCIQHEIDHLNGGLFIDHLSRLKRERLEKKLAKSLK 176
>gi|427427058|ref|ZP_18917103.1| Peptide deformylase [Caenispirillum salinarum AK4]
gi|425883759|gb|EKV32434.1| Peptide deformylase [Caenispirillum salinarum AK4]
Length = 181
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 113/164 (68%), Gaps = 3/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ PD RLK A+P+ + D +++ +M ETMY A GIGLAA QV + K++++
Sbjct: 1 MALLPILVAPDPRLKTKAKPVEKVDAETAQLMEDMLETMYAAPGIGLAAPQVGVSKRVIV 60
Query: 61 LDISKNN--NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++ N L+ NP++IW S E + Y EGCLSLP ++ + R R++V ++ + +
Sbjct: 61 VDVAPEGEKNPLR-MANPEVIWASDELREYEEGCLSLPEQYDAVTRPDRVKVRYIDHQNE 119
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ EI A+GLLA C+QHEIDHL+GK+F+++LS+ K+ +++K K
Sbjct: 120 IREIEADGLLATCIQHEIDHLDGKLFVDHLSSLKRNMVLRKLTK 163
>gi|312882739|ref|ZP_07742474.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369597|gb|EFP97114.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 173
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A P+ ++K + +M ETMY GIGLAA+QVD HK++++
Sbjct: 1 MSVLQVLTFPDDRLRTVATPVENVTPEIQKFVDDMIETMYDEEGIGLAATQVDCHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ +Q V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK F
Sbjct: 61 IDVSETRDQPMVLINPEILDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLTK 161
>gi|444377963|ref|ZP_21177169.1| Peptide deformylase [Enterovibrio sp. AK16]
gi|443677955|gb|ELT84630.1| Peptide deformylase [Enterovibrio sp. AK16]
Length = 170
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 116/166 (69%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++ I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVESVTPEIQTIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+II E I EGCLS+PG + R+ + V AL+ +G +
Sbjct: 61 IDISETRDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVSRASEVTVKALDRDGNEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K++R IK+ L+ IK+
Sbjct: 120 QFEADDLLAICVQHELDHLEGKLFVDYLSPLKQQR-IKQKLEKIKR 164
>gi|417842405|ref|ZP_12488491.1| Peptide deformylase [Haemophilus haemolyticus M21127]
gi|341951696|gb|EGT78254.1| Peptide deformylase [Haemophilus haemolyticus M21127]
Length = 169
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+TE + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R ++++V AL+ +GK F
Sbjct: 61 IDVEGDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVKVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 161
>gi|348027488|ref|YP_004870174.1| peptide deformylase [Glaciecola nitratireducens FR1064]
gi|347944831|gb|AEP28181.1| peptide deformylase [Glaciecola nitratireducens FR1064]
Length = 169
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 113/165 (68%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + ++ +PD RL+ +A P+ E + ++ ++ +M +TM GIGLAASQ+D+H ++++
Sbjct: 1 MAVRTVLTFPDERLRTVAAPVEEVNKEIQTLVDDMFDTMKDEKGIGLAASQIDVHLRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S N+ +VFINP+I I EGCLS+P + K++R++++ V AL+ +GK F
Sbjct: 61 MDVSDEQNEPRVFINPEITKMDG-TTISEEGCLSVPNNYAKVERAEKVTVKALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+GLLAIC+QHE+DHL GK+ ++YLS K+ RI K K K
Sbjct: 120 ELEADGLLAICIQHELDHLKGKLLVDYLSPLKRNRIKTKLEKEAK 164
>gi|345301134|ref|YP_004830492.1| peptide deformylase [Enterobacter asburiae LF7a]
gi|345095071|gb|AEN66707.1| Peptide deformylase [Enterobacter asburiae LF7a]
Length = 169
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++ PD RL+ +AEP+ E + +++I+ +M +TMY GIGLAA+QVDIHK++++
Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSENRDGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADELLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 161
>gi|149190435|ref|ZP_01868706.1| peptide deformylase [Vibrio shilonii AK1]
gi|148835689|gb|EDL52655.1| peptide deformylase [Vibrio shilonii AK1]
Length = 169
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 113/166 (68%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++K++ +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKVVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS +Q V INP+I E I EGCLS+PG + R+ + V ALN +G+ F
Sbjct: 61 IDISDTRDQPMVLINPEITEKRGEDGI-EEGCLSVPGARALVPRAAEVSVKALNRDGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLAIC+QHE+DHL GK+F++YLS K++R IK L+ IK+
Sbjct: 120 TFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKR-IKDKLEKIKR 164
>gi|414165106|ref|ZP_11421353.1| peptide deformylase [Afipia felis ATCC 53690]
gi|410882886|gb|EKS30726.1| peptide deformylase [Afipia felis ATCC 53690]
Length = 189
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + II PD RL+ +++P+ + ++ + +M ETMY A GIGLAA QV + +L+
Sbjct: 19 MAIREIISIPDKRLRVVSDPVAKITPEVRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 78
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K + + VFINP+I+ S + +Y EGCLS+P + +++R+ +RV ++++GK
Sbjct: 79 MDLAKKEGETEPRVFINPEILSKSDDLSVYEEGCLSIPEYYEEVERAASVRVRFMDLDGK 138
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E AEGL A C+QHEIDHLNG +FI+YLS K++R++KKF K K
Sbjct: 139 VHEEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAK 185
>gi|417368583|ref|ZP_12140072.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353586245|gb|EHC45878.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
Length = 164
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 117/157 (74%), Gaps = 1/157 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH +++++D+S+
Sbjct: 1 MLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHLRIIVIDVSE 60
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +G FE+ A+
Sbjct: 61 NRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEAD 119
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 GLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 156
>gi|77359005|ref|YP_338580.1| peptide deformylase [Pseudoalteromonas haloplanktis TAC125]
gi|123587108|sp|Q3IDI2.1|DEF_PSEHT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|76873916|emb|CAI85137.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
haloplanktis TAC125]
Length = 167
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 113/165 (68%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ IA+ + D ++ II +M ETMY GIGLAA+QV+IH+++++
Sbjct: 1 MATLEVLRFPDERLRTIAQEVAHVDDQVRVIIKDMLETMYDENGIGLAATQVNIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N+ V INP+II + EGCLS+P + K+ R++ + V ALN +G+ F
Sbjct: 61 IDVSEERNEPLVLINPQIIKKDG-TTVSEEGCLSVPNSYAKVDRAETVTVAALNEQGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 VLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164
>gi|334345185|ref|YP_004553737.1| peptide deformylase [Sphingobium chlorophenolicum L-1]
gi|334101807|gb|AEG49231.1| Peptide deformylase [Sphingobium chlorophenolicum L-1]
Length = 176
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 115/174 (66%), Gaps = 9/174 (5%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ PD RL+ I+ P+ D +L+++I +M ETMY A GIGLAA QV + K++L+
Sbjct: 1 MAILPILEAPDPRLRTISSPVEAIDADLQRLIDDMLETMYDAPGIGLAAIQVGVPKRVLV 60
Query: 61 LDISKNNNQLQ---------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVH 111
+D+ + + + VFINP+I+ S++ +YNEGCLS+P F +++R IR
Sbjct: 61 IDLQEPESDEEDAPPVKKPMVFINPEILEGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120
Query: 112 ALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
++ +G++ E EGLLA CLQHE+DHL G +FI++LS K++ ++KK K K
Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174
>gi|357024209|ref|ZP_09086370.1| peptide deformylase [Mesorhizobium amorphae CCNWGS0123]
gi|355543895|gb|EHH13010.1| peptide deformylase [Mesorhizobium amorphae CCNWGS0123]
Length = 176
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 115/164 (70%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P+I PD L+++++P+ D L+K+ +M +TMY A GIGLAA Q+ +LL+
Sbjct: 1 MSIKPLIILPDPVLRQVSKPVERVDAPLRKLAGDMLDTMYDAPGIGLAAIQIGEPLRLLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K + VFINP+I+ S ++ +Y EGCLS+P + +++R +RV L+ +GK
Sbjct: 61 IDLAKEDETPAPHVFINPEILESSDQRSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ E+ AEGL+A CLQHEIDHLNG +FI+++S K++ ++KKF K
Sbjct: 121 LQEMQAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKK 164
>gi|15640078|ref|NP_229705.1| peptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121587283|ref|ZP_01677056.1| polypeptide deformylase [Vibrio cholerae 2740-80]
gi|121727904|ref|ZP_01680963.1| polypeptide deformylase [Vibrio cholerae V52]
gi|147673376|ref|YP_001218366.1| peptide deformylase [Vibrio cholerae O395]
gi|153212941|ref|ZP_01948535.1| polypeptide deformylase [Vibrio cholerae 1587]
gi|153802782|ref|ZP_01957368.1| polypeptide deformylase [Vibrio cholerae MZO-3]
gi|153817595|ref|ZP_01970262.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
gi|153821925|ref|ZP_01974592.1| polypeptide deformylase [Vibrio cholerae B33]
gi|153826444|ref|ZP_01979111.1| polypeptide deformylase [Vibrio cholerae MZO-2]
gi|153830125|ref|ZP_01982792.1| polypeptide deformylase [Vibrio cholerae 623-39]
gi|227080283|ref|YP_002808834.1| peptide deformylase [Vibrio cholerae M66-2]
gi|227116501|ref|YP_002818397.1| polypeptide deformylase [Vibrio cholerae O395]
gi|254291093|ref|ZP_04961890.1| polypeptide deformylase [Vibrio cholerae AM-19226]
gi|255746772|ref|ZP_05420718.1| peptide deformylase [Vibrio cholera CIRS 101]
gi|262155853|ref|ZP_06028975.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
gi|262166896|ref|ZP_06034617.1| peptide deformylase [Vibrio cholerae RC27]
gi|379739951|ref|YP_005331920.1| peptide deformylase [Vibrio cholerae IEC224]
gi|417811129|ref|ZP_12457797.1| peptide deformylase [Vibrio cholerae HC-49A2]
gi|417814882|ref|ZP_12461526.1| peptide deformylase [Vibrio cholerae HCUF01]
gi|417818649|ref|ZP_12465271.1| peptide deformylase [Vibrio cholerae HE39]
gi|418339220|ref|ZP_12948112.1| peptide deformylase [Vibrio cholerae HC-23A1]
gi|418342290|ref|ZP_12949111.1| peptide deformylase [Vibrio cholerae HC-28A1]
gi|418347472|ref|ZP_12952214.1| peptide deformylase [Vibrio cholerae HC-43A1]
gi|418356636|ref|ZP_12959352.1| peptide deformylase [Vibrio cholerae HC-61A1]
gi|419824521|ref|ZP_14348034.1| peptide deformylase [Vibrio cholerae CP1033(6)]
gi|419827750|ref|ZP_14351245.1| peptide deformylase [Vibrio cholerae HC-1A2]
gi|419834987|ref|ZP_14358437.1| peptide deformylase [Vibrio cholerae HC-46B1]
gi|421315314|ref|ZP_15765890.1| peptide deformylase [Vibrio cholerae CP1032(5)]
gi|421318848|ref|ZP_15769412.1| peptide deformylase [Vibrio cholerae CP1038(11)]
gi|421322901|ref|ZP_15773436.1| peptide deformylase [Vibrio cholerae CP1041(14)]
gi|421326353|ref|ZP_15776874.1| peptide deformylase [Vibrio cholerae CP1042(15)]
gi|421330278|ref|ZP_15780766.1| peptide deformylase [Vibrio cholerae CP1046(19)]
gi|421333971|ref|ZP_15784445.1| peptide deformylase [Vibrio cholerae CP1048(21)]
gi|421337786|ref|ZP_15788230.1| peptide deformylase [Vibrio cholerae HC-20A2]
gi|421341555|ref|ZP_15791966.1| peptide deformylase [Vibrio cholerae HC-43B1]
gi|421345292|ref|ZP_15795682.1| peptide deformylase [Vibrio cholerae HC-46A1]
gi|421348927|ref|ZP_15799298.1| peptide deformylase [Vibrio cholerae HE-25]
gi|421352815|ref|ZP_15803155.1| peptide deformylase [Vibrio cholerae HE-45]
gi|422305456|ref|ZP_16392660.1| peptide deformylase [Vibrio cholerae CP1035(8)]
gi|422890074|ref|ZP_16932531.1| peptide deformylase [Vibrio cholerae HC-40A1]
gi|422900649|ref|ZP_16936280.1| peptide deformylase [Vibrio cholerae HC-48A1]
gi|422905042|ref|ZP_16939928.1| peptide deformylase [Vibrio cholerae HC-70A1]
gi|422908561|ref|ZP_16943252.1| peptide deformylase [Vibrio cholerae HE-09]
gi|422911791|ref|ZP_16946339.1| peptide deformylase [Vibrio cholerae HFU-02]
gi|422915777|ref|ZP_16950142.1| peptide deformylase [Vibrio cholerae HC-02A1]
gi|422921292|ref|ZP_16954540.1| peptide deformylase [Vibrio cholerae BJG-01]
gi|422924257|ref|ZP_16957325.1| peptide deformylase [Vibrio cholerae HC-38A1]
gi|423143322|ref|ZP_17130956.1| peptide deformylase [Vibrio cholerae HC-19A1]
gi|423148302|ref|ZP_17135679.1| peptide deformylase [Vibrio cholerae HC-21A1]
gi|423152091|ref|ZP_17139321.1| peptide deformylase [Vibrio cholerae HC-22A1]
gi|423154882|ref|ZP_17142033.1| peptide deformylase [Vibrio cholerae HC-32A1]
gi|423158747|ref|ZP_17145733.1| peptide deformylase [Vibrio cholerae HC-33A2]
gi|423163410|ref|ZP_17150225.1| peptide deformylase [Vibrio cholerae HC-48B2]
gi|423729413|ref|ZP_17702763.1| peptide deformylase [Vibrio cholerae HC-17A1]
gi|423733326|ref|ZP_17706565.1| peptide deformylase [Vibrio cholerae HC-41B1]
gi|423744135|ref|ZP_17710941.1| peptide deformylase [Vibrio cholerae HC-50A2]
gi|423810685|ref|ZP_17714731.1| peptide deformylase [Vibrio cholerae HC-55C2]
gi|423844923|ref|ZP_17718469.1| peptide deformylase [Vibrio cholerae HC-59A1]
gi|423876955|ref|ZP_17722136.1| peptide deformylase [Vibrio cholerae HC-60A1]
gi|423888036|ref|ZP_17724980.1| peptide deformylase [Vibrio cholerae HC-62A1]
gi|423920448|ref|ZP_17729593.1| peptide deformylase [Vibrio cholerae HC-77A1]
gi|423941757|ref|ZP_17732990.1| peptide deformylase [Vibrio cholerae HE-40]
gi|423973178|ref|ZP_17736535.1| peptide deformylase [Vibrio cholerae HE-46]
gi|423994710|ref|ZP_17739474.1| peptide deformylase [Vibrio cholerae HC-02C1]
gi|424000593|ref|ZP_17743702.1| peptide deformylase [Vibrio cholerae HC-17A2]
gi|424004759|ref|ZP_17747762.1| peptide deformylase [Vibrio cholerae HC-37A1]
gi|424007627|ref|ZP_17750589.1| peptide deformylase [Vibrio cholerae HC-44C1]
gi|424011992|ref|ZP_17754757.1| peptide deformylase [Vibrio cholerae HC-55B2]
gi|424018004|ref|ZP_17757822.1| peptide deformylase [Vibrio cholerae HC-59B1]
gi|424022555|ref|ZP_17762237.1| peptide deformylase [Vibrio cholerae HC-62B1]
gi|424025575|ref|ZP_17765210.1| peptide deformylase [Vibrio cholerae HC-69A1]
gi|424584946|ref|ZP_18024557.1| peptide deformylase [Vibrio cholerae CP1030(3)]
gi|424589320|ref|ZP_18028784.1| peptide deformylase [Vibrio cholerae CP1037(10)]
gi|424593573|ref|ZP_18032931.1| peptide deformylase [Vibrio cholerae CP1040(13)]
gi|424597501|ref|ZP_18036717.1| peptide deformylase [Vibrio Cholerae CP1044(17)]
gi|424600278|ref|ZP_18039451.1| peptide deformylase [Vibrio cholerae CP1047(20)]
gi|424605177|ref|ZP_18044163.1| peptide deformylase [Vibrio cholerae CP1050(23)]
gi|424608903|ref|ZP_18047780.1| peptide deformylase [Vibrio cholerae HC-39A1]
gi|424611809|ref|ZP_18050636.1| peptide deformylase [Vibrio cholerae HC-41A1]
gi|424615699|ref|ZP_18054409.1| peptide deformylase [Vibrio cholerae HC-42A1]
gi|424620448|ref|ZP_18058995.1| peptide deformylase [Vibrio cholerae HC-47A1]
gi|424623385|ref|ZP_18061877.1| peptide deformylase [Vibrio cholerae HC-50A1]
gi|424627955|ref|ZP_18066282.1| peptide deformylase [Vibrio cholerae HC-51A1]
gi|424631903|ref|ZP_18070041.1| peptide deformylase [Vibrio cholerae HC-52A1]
gi|424634991|ref|ZP_18073027.1| peptide deformylase [Vibrio cholerae HC-55A1]
gi|424638816|ref|ZP_18076728.1| peptide deformylase [Vibrio cholerae HC-56A1]
gi|424643266|ref|ZP_18081041.1| peptide deformylase [Vibrio cholerae HC-56A2]
gi|424647070|ref|ZP_18084764.1| peptide deformylase [Vibrio cholerae HC-57A1]
gi|424651197|ref|ZP_18088738.1| peptide deformylase [Vibrio cholerae HC-57A2]
gi|424655151|ref|ZP_18092468.1| peptide deformylase [Vibrio cholerae HC-81A2]
gi|424657933|ref|ZP_18095207.1| peptide deformylase [Vibrio cholerae HE-16]
gi|440712029|ref|ZP_20892655.1| peptide deformylase [Vibrio cholerae 4260B]
gi|443502103|ref|ZP_21069112.1| peptide deformylase [Vibrio cholerae HC-64A1]
gi|443506003|ref|ZP_21072819.1| peptide deformylase [Vibrio cholerae HC-65A1]
gi|443509840|ref|ZP_21076531.1| peptide deformylase [Vibrio cholerae HC-67A1]
gi|443513680|ref|ZP_21080242.1| peptide deformylase [Vibrio cholerae HC-68A1]
gi|443517488|ref|ZP_21083931.1| peptide deformylase [Vibrio cholerae HC-71A1]
gi|443522075|ref|ZP_21088342.1| peptide deformylase [Vibrio cholerae HC-72A2]
gi|443525942|ref|ZP_21092049.1| peptide deformylase [Vibrio cholerae HC-78A1]
gi|443529009|ref|ZP_21095032.1| peptide deformylase [Vibrio cholerae HC-7A1]
gi|443533747|ref|ZP_21099687.1| peptide deformylase [Vibrio cholerae HC-80A1]
gi|443536571|ref|ZP_21102431.1| peptide deformylase [Vibrio cholerae HC-81A1]
gi|449054722|ref|ZP_21733390.1| Peptide deformylase [Vibrio cholerae O1 str. Inaba G4222]
gi|17432954|sp|Q9KVU3.1|DEF1_VIBCH RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|9654439|gb|AAF93224.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121548529|gb|EAX58585.1| polypeptide deformylase [Vibrio cholerae 2740-80]
gi|121629848|gb|EAX62263.1| polypeptide deformylase [Vibrio cholerae V52]
gi|124116167|gb|EAY34987.1| polypeptide deformylase [Vibrio cholerae 1587]
gi|124121695|gb|EAY40438.1| polypeptide deformylase [Vibrio cholerae MZO-3]
gi|126511863|gb|EAZ74457.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
gi|126520545|gb|EAZ77768.1| polypeptide deformylase [Vibrio cholerae B33]
gi|146315259|gb|ABQ19798.1| polypeptide deformylase [Vibrio cholerae O395]
gi|148874389|gb|EDL72524.1| polypeptide deformylase [Vibrio cholerae 623-39]
gi|149739830|gb|EDM54025.1| polypeptide deformylase [Vibrio cholerae MZO-2]
gi|150422938|gb|EDN14888.1| polypeptide deformylase [Vibrio cholerae AM-19226]
gi|227008171|gb|ACP04383.1| polypeptide deformylase [Vibrio cholerae M66-2]
gi|227011951|gb|ACP08161.1| polypeptide deformylase [Vibrio cholerae O395]
gi|255735529|gb|EET90928.1| peptide deformylase [Vibrio cholera CIRS 101]
gi|262024667|gb|EEY43347.1| peptide deformylase [Vibrio cholerae RC27]
gi|262030305|gb|EEY48947.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
gi|340044257|gb|EGR05210.1| peptide deformylase [Vibrio cholerae HE39]
gi|340046054|gb|EGR06989.1| peptide deformylase [Vibrio cholerae HCUF01]
gi|340046239|gb|EGR07170.1| peptide deformylase [Vibrio cholerae HC-49A2]
gi|341627250|gb|EGS52574.1| peptide deformylase [Vibrio cholerae HC-70A1]
gi|341628589|gb|EGS53817.1| peptide deformylase [Vibrio cholerae HC-48A1]
gi|341628791|gb|EGS53985.1| peptide deformylase [Vibrio cholerae HC-40A1]
gi|341640171|gb|EGS64763.1| peptide deformylase [Vibrio cholerae HE-09]
gi|341642065|gb|EGS66553.1| peptide deformylase [Vibrio cholerae HFU-02]
gi|341642138|gb|EGS66625.1| peptide deformylase [Vibrio cholerae HC-02A1]
gi|341649322|gb|EGS73301.1| peptide deformylase [Vibrio cholerae HC-38A1]
gi|341649366|gb|EGS73344.1| peptide deformylase [Vibrio cholerae BJG-01]
gi|356424047|gb|EHH77469.1| peptide deformylase [Vibrio cholerae HC-21A1]
gi|356428088|gb|EHH81318.1| peptide deformylase [Vibrio cholerae HC-19A1]
gi|356428773|gb|EHH81994.1| peptide deformylase [Vibrio cholerae HC-23A1]
gi|356436240|gb|EHH89360.1| peptide deformylase [Vibrio cholerae HC-22A1]
gi|356439189|gb|EHH92178.1| peptide deformylase [Vibrio cholerae HC-28A1]
gi|356446911|gb|EHH99702.1| peptide deformylase [Vibrio cholerae HC-32A1]
gi|356448904|gb|EHI01665.1| peptide deformylase [Vibrio cholerae HC-43A1]
gi|356450808|gb|EHI03518.1| peptide deformylase [Vibrio cholerae HC-61A1]
gi|356451474|gb|EHI04159.1| peptide deformylase [Vibrio cholerae HC-33A2]
gi|356456924|gb|EHI09501.1| peptide deformylase [Vibrio cholerae HC-48B2]
gi|378793461|gb|AFC56932.1| peptide deformylase [Vibrio cholerae IEC224]
gi|395924278|gb|EJH35084.1| peptide deformylase [Vibrio cholerae CP1032(5)]
gi|395925485|gb|EJH36283.1| peptide deformylase [Vibrio cholerae CP1041(14)]
gi|395926601|gb|EJH37379.1| peptide deformylase [Vibrio cholerae CP1038(11)]
gi|395936077|gb|EJH46807.1| peptide deformylase [Vibrio cholerae CP1042(15)]
gi|395936453|gb|EJH47177.1| peptide deformylase [Vibrio cholerae CP1046(19)]
gi|395938334|gb|EJH49028.1| peptide deformylase [Vibrio cholerae CP1048(21)]
gi|395948183|gb|EJH58836.1| peptide deformylase [Vibrio cholerae HC-43B1]
gi|395948324|gb|EJH58975.1| peptide deformylase [Vibrio cholerae HC-20A2]
gi|395948902|gb|EJH59537.1| peptide deformylase [Vibrio cholerae HC-46A1]
gi|395956963|gb|EJH67552.1| peptide deformylase [Vibrio cholerae HE-45]
gi|395957120|gb|EJH67705.1| peptide deformylase [Vibrio cholerae HE-25]
gi|395965514|gb|EJH75683.1| peptide deformylase [Vibrio cholerae HC-56A2]
gi|395965663|gb|EJH75826.1| peptide deformylase [Vibrio cholerae HC-57A2]
gi|395967970|gb|EJH77994.1| peptide deformylase [Vibrio cholerae HC-42A1]
gi|395977469|gb|EJH86878.1| peptide deformylase [Vibrio cholerae HC-47A1]
gi|395979828|gb|EJH89153.1| peptide deformylase [Vibrio cholerae CP1030(3)]
gi|395980232|gb|EJH89521.1| peptide deformylase [Vibrio cholerae CP1047(20)]
gi|408011529|gb|EKG49339.1| peptide deformylase [Vibrio cholerae HC-39A1]
gi|408017704|gb|EKG55190.1| peptide deformylase [Vibrio cholerae HC-50A1]
gi|408018599|gb|EKG56037.1| peptide deformylase [Vibrio cholerae HC-41A1]
gi|408023437|gb|EKG60601.1| peptide deformylase [Vibrio cholerae HC-52A1]
gi|408028529|gb|EKG65419.1| peptide deformylase [Vibrio cholerae HC-56A1]
gi|408028788|gb|EKG65650.1| peptide deformylase [Vibrio cholerae HC-55A1]
gi|408038007|gb|EKG74367.1| peptide deformylase [Vibrio cholerae CP1037(10)]
gi|408038784|gb|EKG75111.1| peptide deformylase [Vibrio cholerae HC-57A1]
gi|408038953|gb|EKG75266.1| peptide deformylase [Vibrio cholerae CP1040(13)]
gi|408046145|gb|EKG81861.1| peptide deformylase [Vibrio Cholerae CP1044(17)]
gi|408047916|gb|EKG83413.1| peptide deformylase [Vibrio cholerae CP1050(23)]
gi|408057361|gb|EKG92213.1| peptide deformylase [Vibrio cholerae HE-16]
gi|408058400|gb|EKG93203.1| peptide deformylase [Vibrio cholerae HC-81A2]
gi|408060043|gb|EKG94760.1| peptide deformylase [Vibrio cholerae HC-51A1]
gi|408613051|gb|EKK86382.1| peptide deformylase [Vibrio cholerae CP1033(6)]
gi|408624761|gb|EKK97699.1| peptide deformylase [Vibrio cholerae HC-1A2]
gi|408628846|gb|EKL01564.1| peptide deformylase [Vibrio cholerae CP1035(8)]
gi|408629223|gb|EKL01932.1| peptide deformylase [Vibrio cholerae HC-17A1]
gi|408632792|gb|EKL05227.1| peptide deformylase [Vibrio cholerae HC-41B1]
gi|408637515|gb|EKL09563.1| peptide deformylase [Vibrio cholerae HC-55C2]
gi|408645398|gb|EKL17053.1| peptide deformylase [Vibrio cholerae HC-60A1]
gi|408645441|gb|EKL17093.1| peptide deformylase [Vibrio cholerae HC-50A2]
gi|408646497|gb|EKL18097.1| peptide deformylase [Vibrio cholerae HC-59A1]
gi|408661015|gb|EKL32011.1| peptide deformylase [Vibrio cholerae HC-77A1]
gi|408661697|gb|EKL32680.1| peptide deformylase [Vibrio cholerae HC-62A1]
gi|408662684|gb|EKL33596.1| peptide deformylase [Vibrio cholerae HE-40]
gi|408666644|gb|EKL37423.1| peptide deformylase [Vibrio cholerae HE-46]
gi|408850351|gb|EKL90316.1| peptide deformylase [Vibrio cholerae HC-37A1]
gi|408850960|gb|EKL90901.1| peptide deformylase [Vibrio cholerae HC-17A2]
gi|408855788|gb|EKL95484.1| peptide deformylase [Vibrio cholerae HC-02C1]
gi|408859715|gb|EKL99370.1| peptide deformylase [Vibrio cholerae HC-46B1]
gi|408863174|gb|EKM02666.1| peptide deformylase [Vibrio cholerae HC-55B2]
gi|408868377|gb|EKM07713.1| peptide deformylase [Vibrio cholerae HC-44C1]
gi|408871815|gb|EKM11043.1| peptide deformylase [Vibrio cholerae HC-59B1]
gi|408876575|gb|EKM15688.1| peptide deformylase [Vibrio cholerae HC-62B1]
gi|408882472|gb|EKM21291.1| peptide deformylase [Vibrio cholerae HC-69A1]
gi|439972274|gb|ELP48569.1| peptide deformylase [Vibrio cholerae 4260B]
gi|443433586|gb|ELS76087.1| peptide deformylase [Vibrio cholerae HC-64A1]
gi|443437416|gb|ELS83507.1| peptide deformylase [Vibrio cholerae HC-65A1]
gi|443441255|gb|ELS90917.1| peptide deformylase [Vibrio cholerae HC-67A1]
gi|443445071|gb|ELS98322.1| peptide deformylase [Vibrio cholerae HC-68A1]
gi|443448905|gb|ELT05514.1| peptide deformylase [Vibrio cholerae HC-71A1]
gi|443451968|gb|ELT12205.1| peptide deformylase [Vibrio cholerae HC-72A2]
gi|443455750|gb|ELT19510.1| peptide deformylase [Vibrio cholerae HC-78A1]
gi|443460272|gb|ELT27660.1| peptide deformylase [Vibrio cholerae HC-7A1]
gi|443463095|gb|ELT34106.1| peptide deformylase [Vibrio cholerae HC-80A1]
gi|443467818|gb|ELT42472.1| peptide deformylase [Vibrio cholerae HC-81A1]
gi|448265868|gb|EMB03101.1| Peptide deformylase [Vibrio cholerae O1 str. Inaba G4222]
Length = 169
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 61 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 120 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 164
>gi|381201346|ref|ZP_09908473.1| N-formylmethionyl-tRNA deformylase [Sphingobium yanoikuyae XLDN2-5]
Length = 176
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 115/171 (67%), Gaps = 9/171 (5%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ PD RL+ I+ P+ D +L+++I +M ETMY A GIGLAA QV + K++L+
Sbjct: 1 MAILPILEAPDPRLRTISTPVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRILV 60
Query: 61 LDISKNNNQLQ---------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVH 111
+D+ + + + VFINP+I+ S E+ +YNEGCLS+P F +++R IR
Sbjct: 61 MDLQEPESDEEGAPPVKKPMVFINPEILKESDEQSVYNEGCLSVPDQFAEVERPAVIRAS 120
Query: 112 ALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
++ +G++ E EGLLAICLQHE+DHL G +FI++LS K++ ++KK K
Sbjct: 121 WMDRDGRIHEEQLEGLLAICLQHEMDHLEGVLFIDHLSRLKRDMLLKKLNK 171
>gi|336122746|ref|YP_004564794.1| peptide deformylase [Vibrio anguillarum 775]
gi|335340469|gb|AEH31752.1| Peptide deformylase [Vibrio anguillarum 775]
Length = 194
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 26 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEDGIGLAATQVDIHQRIVV 85
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ +Q V INP+I+ E I EGCLS+PG + R+ + V AL+ +G F
Sbjct: 86 IDISESRDQPMVLINPEILEKRGEDGI-EEGCLSVPGSRALVPRAAEVTVKALDRDGNEF 144
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K L+ IK+
Sbjct: 145 SFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIRDK-LEKIKR 189
>gi|388455536|ref|ZP_10137831.1| polypeptide deformylase [Fluoribacter dumoffii Tex-KL]
Length = 169
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+Y PD RL+ +A+P+ FD L+ +I +M ETMY A G+GLAA Q+ + +L +
Sbjct: 1 MAIHTILYLPDPRLRDVAKPVVHFDDKLQTLIDDMFETMYDARGVGLAAPQIGVGLRLSV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ EK+ + EGCLS+PG ++ + R++++ V AL+ GK F
Sbjct: 61 IDIEGDKQNQLVIINPEIVTAEGEKK-FEEGCLSVPGAYDTVIRAEKVTVKALDRNGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI AEGLLA CLQHEIDH+NGK+FI+ LS KK KK K
Sbjct: 120 EINAEGLLAECLQHEIDHMNGKLFIDLLSPLKKAMARKKLEK 161
>gi|297180810|gb|ADI17016.1| N-formylmethionyl-tRNA deformylase [uncultured Vibrionales
bacterium HF0010_22E23]
Length = 170
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++KI+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDERLRTVAKPVESVTPEIQKIVDDMLETMYEENGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP+II E I EGCLS+PG + R+ + V AL+ +G +
Sbjct: 61 IDVSETRDEPMVLINPEIIEKRGEDGI-EEGCLSVPGSQALVPRAAEVTVKALDRDGNEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K++R IK+ L+ IK+
Sbjct: 120 QFDADDLLAICVQHELDHLMGKLFVDYLSPLKRQR-IKQKLEKIKR 164
>gi|421596934|ref|ZP_16040648.1| peptide deformylase [Bradyrhizobium sp. CCGE-LA001]
gi|404270957|gb|EJZ34923.1| peptide deformylase [Bradyrhizobium sp. CCGE-LA001]
Length = 175
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 117/172 (68%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD +L+ +++PI + ++K+ +M ETMY A GIGLAA QV +L+
Sbjct: 1 MALREIIILPDKQLRLVSKPIEKVTPEIRKLADDMFETMYDAPGIGLAAIQVAQPLRLIT 60
Query: 61 LDISKNN------NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K + +Q +VFINP+II S+E Y EGCLS+P + +++R ++RV L+
Sbjct: 61 MDLAKRDEDGETRHQPRVFINPEIIASSEELSTYEEGCLSIPEYYEEVERPAKVRVRFLD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++GK+ E AEGL A C+QHEIDHLNG +F++YLS K++R++KKF K K+
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFEKAAKR 172
>gi|410629537|ref|ZP_11340237.1| peptide deformylase [Glaciecola arctica BSs20135]
gi|410151022|dbj|GAC17104.1| peptide deformylase [Glaciecola arctica BSs20135]
Length = 169
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+ I D ++ +I +M +TM GIGLAA+QV++HK+L++
Sbjct: 1 MAILDVLRFPDERLRTVAKKIENVDKSITGLISDMFDTMREENGIGLAATQVNVHKRLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + VFINP+I + + K I EGCLS+P + +++R+++I V AL+ G+ F
Sbjct: 61 MDVSENQDNPMVFINPEI-SHKEGKTISEEGCLSVPNNYAQVERAEKITVSALDKAGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI K K +
Sbjct: 120 TLEADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIKTKLEKEAR 164
>gi|319775435|ref|YP_004137923.1| peptide deformylase [Haemophilus influenzae F3047]
gi|329122537|ref|ZP_08251120.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
gi|317450026|emb|CBY86240.1| peptide deformylase [Haemophilus influenzae F3047]
gi|327473142|gb|EGF18566.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
Length = 169
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+TE + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R +++ V AL+ +GK F
Sbjct: 61 IDVEGDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K LK
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLK 161
>gi|288550484|ref|ZP_05970614.2| peptide deformylase [Enterobacter cancerogenus ATCC 35316]
gi|288314935|gb|EFC53873.1| peptide deformylase [Enterobacter cancerogenus ATCC 35316]
Length = 164
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ PD RL+ +AEP+ E + +++I+ +M +TMY GIGLAA+QVDIHK+++++D+S+
Sbjct: 1 MLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSE 60
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
N + V INP+++ S E I EGCLS+P + R++++++ AL+ EGK FE+ A+
Sbjct: 61 NRDGRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDREGKPFELEAD 119
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
LLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 DLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEK 156
>gi|119471681|ref|ZP_01614066.1| N-terminal methionine peptide deformylase [Alteromonadales
bacterium TW-7]
gi|359450339|ref|ZP_09239793.1| peptide deformylase [Pseudoalteromonas sp. BSi20480]
gi|392540119|ref|ZP_10287256.1| peptide deformylase [Pseudoalteromonas marina mano4]
gi|119445460|gb|EAW26747.1| N-terminal methionine peptide deformylase [Alteromonadales
bacterium TW-7]
gi|358043888|dbj|GAA76042.1| peptide deformylase [Pseudoalteromonas sp. BSi20480]
Length = 168
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+ IA+ + + D +++I+ +M ETMY GIGLAA+QV+IH+++++
Sbjct: 1 MARLEVLRFPDERLRTIAKDVADVDDQVRQIVKDMLETMYDENGIGLAATQVNIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP+II I EGCLS+P + K+ R++ + V ALN G+ F
Sbjct: 61 IDVSEERDEPLVLINPQIIKKDG-STISEEGCLSVPNSYAKVDRAETVTVAALNENGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI KK K K
Sbjct: 120 VLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164
>gi|54310617|ref|YP_131637.1| peptide deformylase [Photobacterium profundum SS9]
gi|46915060|emb|CAG21835.1| Putative polypeptide deformylase [Photobacterium profundum SS9]
Length = 169
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL ++ +PD RL+ IA+P+ +++ I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSLLQVLIFPDERLRTIAKPVEAITPDIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+I E I EGCLS+PG + R+ + V AL+ +G F
Sbjct: 61 IDISEERDQPMVLINPEITDKRGEDGI-EEGCLSVPGSRALVSRAAEVSVKALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 SFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEK 161
>gi|299132603|ref|ZP_07025798.1| peptide deformylase [Afipia sp. 1NLS2]
gi|298592740|gb|EFI52940.1| peptide deformylase [Afipia sp. 1NLS2]
Length = 189
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + II PD RL+ ++EP+ + ++ + +M ETMY A GIGLAA QV + +L+
Sbjct: 19 MAIREIISIPDKRLRLVSEPVDKITPEIRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 78
Query: 61 LDISKNNNQ--LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+SK + +VFINP+I+ S + +Y EGCLS+P + +++R +R+ ++++GK
Sbjct: 79 MDVSKKEGEKVPRVFINPEILSKSDDVSVYEEGCLSIPEYYEEVERPASVRIRYMDLDGK 138
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E AEGL A C+QHEIDH+NG +FI+YLS K++R++KKF K K
Sbjct: 139 VHEEDAEGLFATCIQHEIDHINGVLFIDYLSKLKRDRVMKKFTKAAK 185
>gi|373467154|ref|ZP_09558455.1| peptide deformylase [Haemophilus sp. oral taxon 851 str. F0397]
gi|371759113|gb|EHO47859.1| peptide deformylase [Haemophilus sp. oral taxon 851 str. F0397]
Length = 189
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+TE + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 21 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 80
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R ++++V AL+ +GK F
Sbjct: 81 IDVEGDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVKVRALDRDGKEF 139
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 140 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 181
>gi|52426256|ref|YP_089393.1| peptide deformylase [Mannheimia succiniciproducens MBEL55E]
gi|81691285|sp|Q65QF2.1|DEF_MANSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|52308308|gb|AAU38808.1| Def protein [Mannheimia succiniciproducens MBEL55E]
Length = 171
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ YPD RLK IAEP+TEF+ L+ I +M ETMY GIGLAA+QVD+HK+++
Sbjct: 1 MSVLNVLIYPDERLKTIAEPVTEFNDELQTFIDDMFETMYQEEGIGLAATQVDVHKRVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI+ + V INP+++ E I CLSLPG+ + R +++ V ALN +G+ F
Sbjct: 61 IDITGEKTEQLVLINPELLDGEGETGIEEG-CLSLPGLRGFVPRKEKVTVKALNRQGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F +YLS K+ R+ +K +K
Sbjct: 120 TLHADGLLAICIQHEIDHLNGIVFADYLSPLKRNRMKEKLVK 161
>gi|290477161|ref|YP_003470076.1| peptide deformylase [Xenorhabdus bovienii SS-2004]
gi|289176509|emb|CBJ83318.1| peptide deformylase [Xenorhabdus bovienii SS-2004]
Length = 170
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 117/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+ IA+P+ + D ++ II +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHYPDERLRTIAKPVEKVDAGIQSIIDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ I EGCLS+P + R +++++ AL+ G+ F
Sbjct: 61 IDVSENRDQRLVLINPELMNEVGATGI-EEGCLSVPEQRAFVPRFEQVKIKALDYHGQQF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+FI+YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKVEK 161
>gi|262191293|ref|ZP_06049487.1| peptide deformylase [Vibrio cholerae CT 5369-93]
gi|262032831|gb|EEY51375.1| peptide deformylase [Vibrio cholerae CT 5369-93]
Length = 190
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRVVV 81
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 82 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 140
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 141 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 185
>gi|319898269|ref|YP_004158362.1| polypeptide deformylase [Bartonella clarridgeiae 73]
gi|319402233|emb|CBI75766.1| polypeptide deformylase [Bartonella clarridgeiae 73]
Length = 171
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 117/169 (69%), Gaps = 4/169 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P++ PD L+++++P+ D ++K+ +M ETMY+A GIGLAA QV + ++L+
Sbjct: 1 MPIKPLVILPDPILREVSKPVEHIDSIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60
Query: 61 LDISKNN---NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
LDIS + N L V INP+I+W S E+ IY EGCLS+P + +++R K +R+ + EG
Sbjct: 61 LDISSKDAPKNPL-VVINPEILWISNERNIYREGCLSIPEYYAEVERPKYLRICYRDREG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
K EI A+ LLA CLQHEIDHLNG +FI+++S K++ +I+KF K KK
Sbjct: 120 KQAEIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKFKKRAKK 168
>gi|254851611|ref|ZP_05240961.1| peptide deformylase 2 [Vibrio cholerae MO10]
gi|360036730|ref|YP_004938493.1| peptide deformylase [Vibrio cholerae O1 str. 2010EL-1786]
gi|254847316|gb|EET25730.1| peptide deformylase 2 [Vibrio cholerae MO10]
gi|356647884|gb|AET27939.1| peptide deformylase [Vibrio cholerae O1 str. 2010EL-1786]
Length = 190
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 82 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 140
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 141 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 185
>gi|417844300|ref|ZP_12490345.1| Peptide deformylase [Haemophilus haemolyticus M21639]
gi|341956931|gb|EGT83346.1| Peptide deformylase [Haemophilus haemolyticus M21639]
Length = 169
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+TE + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R ++++V AL+ +GK F
Sbjct: 61 IDVEGDKQNQIVLINPEILVSEGETGI-EEGCLSIPGFRALVPRKEKVKVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 161
>gi|323496960|ref|ZP_08101988.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
gi|343499315|ref|ZP_08737298.1| peptide deformylase [Vibrio tubiashii ATCC 19109]
gi|418479408|ref|ZP_13048490.1| peptide deformylase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|323318034|gb|EGA71017.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
gi|342823190|gb|EGU57846.1| peptide deformylase [Vibrio tubiashii ATCC 19109]
gi|384572919|gb|EIF03423.1| peptide deformylase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 173
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ E ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V ALN +G+ +
Sbjct: 61 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGEEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAK 161
>gi|352090157|ref|ZP_08954329.1| peptide deformylase [Rhodanobacter sp. 2APBS1]
gi|351677535|gb|EHA60683.1| peptide deformylase [Rhodanobacter sp. 2APBS1]
Length = 189
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
+++L I+ +PD RL+ A P++ FD LK+ + +M ETMY A G+GLAA+QV++H+++L+
Sbjct: 21 VSILSILEFPDPRLRTRAAPVSVFDAKLKQFVADMFETMYAANGVGLAATQVNVHQRVLV 80
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ V IN +I+ Q+Y EGCLS PG++ + R+ R+RV A +++GK
Sbjct: 81 IDMSEERNQPLVLINAEIVEKDG-AQVYQEGCLSFPGLYADVTRALRVRVKAQDVDGKAV 139
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
AEG LA+ +QHE+DHL GK+F++YLS
Sbjct: 140 VHEAEGPLAVAVQHEMDHLEGKVFVDYLS 168
>gi|270157753|ref|ZP_06186410.1| peptide deformylase [Legionella longbeachae D-4968]
gi|289163978|ref|YP_003454116.1| polypeptide deformylase [Legionella longbeachae NSW150]
gi|269989778|gb|EEZ96032.1| peptide deformylase [Legionella longbeachae D-4968]
gi|288857151|emb|CBJ10967.1| putative polypeptide deformylase [Legionella longbeachae NSW150]
Length = 170
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+Y PD RL+++A+P+ FD L+ +I +M ETMY A G+GLAA Q+ I +L +
Sbjct: 1 MAIHTILYLPDARLREVAKPVVHFDDKLQTLIEDMFETMYAAHGVGLAAPQIGIGLRLSV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI+ + V INP+II EK+ + EGCLS+PG ++ + R++++ V AL+ GK F
Sbjct: 61 IDIAGDKKNQLVIINPEIIASEGEKK-FEEGCLSVPGAYDTVIRAEKVIVKALDRTGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI A+GLLA CLQHEIDH+NGK+FI+ LS KK KK K
Sbjct: 120 EIQADGLLAECLQHEIDHMNGKLFIDLLSPLKKAMARKKLEK 161
>gi|90581176|ref|ZP_01236975.1| peptide deformylase [Photobacterium angustum S14]
gi|90437697|gb|EAS62889.1| peptide deformylase [Vibrio angustum S14]
Length = 169
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 115/166 (69%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++ II +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ V +NP+I E I EGCLS+P + R+ + V AL+ +GK +
Sbjct: 61 IDVSEERNQPMVLVNPEITEERGEDGI-EEGCLSVPTARGFVPRAAGVSVTALDRDGKEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+GLLAIC+QHE+DHL GK+F++YLS K++R IK+ L+ IK+
Sbjct: 120 SFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQR-IKQKLEKIKR 164
>gi|410087503|ref|ZP_11284206.1| Peptide deformylase [Morganella morganii SC01]
gi|409765947|gb|EKN50045.1| Peptide deformylase [Morganella morganii SC01]
Length = 170
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 109/165 (66%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL + ++PD L++ A+P+T FD LK + NMTETMY GIGLAA QV + K+++I
Sbjct: 1 MALLTLRHFPDPCLRETAQPVTVFDDELKTFVTNMTETMYAERGIGLAAPQVGVCKRVII 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q INP+ I E + + GCLSLP + + +R + V +I G +
Sbjct: 61 VDVSENRDQPMALINPEFIQCDGEMMMMD-GCLSLPESYTETQRYSAVTVRYQDINGAEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ AEGL A CLQHEIDHLNGK+FI++LS K++RI KK K +K
Sbjct: 120 TLEAEGLQAGCLQHEIDHLNGKLFIDHLSPLKRQRIEKKVKKTLK 164
>gi|374261805|ref|ZP_09620383.1| peptide deformylase [Legionella drancourtii LLAP12]
gi|363537899|gb|EHL31315.1| peptide deformylase [Legionella drancourtii LLAP12]
Length = 171
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+Y PD RL+++++P+ FD L+ +I +M ETMY A G+GLAA+Q+ + +L +
Sbjct: 1 MAIHKILYLPDPRLRELSKPVVTFDDTLQTLIDDMFETMYDAHGVGLAAAQIGVSLRLSV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+II E + ++EGCLS+PG ++ + R++++ V AL+ GK F
Sbjct: 61 IDILGDKKNQIVIINPEIIASEGESK-FDEGCLSVPGAYDTVTRAEKVTVKALDRHGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI AEGLLA CLQHEIDH+NGK+FI+ LS KK KK K
Sbjct: 120 EIKAEGLLAECLQHEIDHMNGKLFIDMLSPLKKAMARKKLDK 161
>gi|417822211|ref|ZP_12468813.1| peptide deformylase [Vibrio cholerae HE48]
gi|340049824|gb|EGR10736.1| peptide deformylase [Vibrio cholerae HE48]
Length = 169
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMFETMYAEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 61 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 120 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 164
>gi|229508331|ref|ZP_04397835.1| peptide deformylase [Vibrio cholerae BX 330286]
gi|229508830|ref|ZP_04398321.1| peptide deformylase [Vibrio cholerae B33]
gi|229515915|ref|ZP_04405372.1| peptide deformylase [Vibrio cholerae TMA 21]
gi|229517101|ref|ZP_04406547.1| peptide deformylase [Vibrio cholerae RC9]
gi|229520217|ref|ZP_04409644.1| peptide deformylase [Vibrio cholerae TM 11079-80]
gi|229606606|ref|YP_002877254.1| peptide deformylase [Vibrio cholerae MJ-1236]
gi|229342811|gb|EEO07802.1| peptide deformylase [Vibrio cholerae TM 11079-80]
gi|229346164|gb|EEO11136.1| peptide deformylase [Vibrio cholerae RC9]
gi|229347015|gb|EEO11977.1| peptide deformylase [Vibrio cholerae TMA 21]
gi|229354105|gb|EEO19037.1| peptide deformylase [Vibrio cholerae B33]
gi|229354604|gb|EEO19526.1| peptide deformylase [Vibrio cholerae BX 330286]
gi|229369261|gb|ACQ59684.1| peptide deformylase [Vibrio cholerae MJ-1236]
Length = 194
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 26 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 86 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 144
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 145 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 189
>gi|260771088|ref|ZP_05880016.1| peptide deformylase [Vibrio furnissii CIP 102972]
gi|375129417|ref|YP_004991513.1| peptide deformylase [Vibrio furnissii NCTC 11218]
gi|260613977|gb|EEX39168.1| peptide deformylase [Vibrio furnissii CIP 102972]
gi|315178587|gb|ADT85501.1| peptide deformylase [Vibrio furnissii NCTC 11218]
Length = 170
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + ++KI+ +M ETMY GIGLAA+QVD+H+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP I+ E I EGCLS+PG + R+ + V ALN +G+ +
Sbjct: 61 IDISETRDEPMVLINPVILEKRGEDGI-EEGCLSVPGARALVARAAEVTVKALNRDGEEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLAIC+QHE+DHL GK+F++YLS K++R IK+ L+ IK+
Sbjct: 120 TFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKR-IKEKLEKIKR 164
>gi|160872447|ref|ZP_02062579.1| peptide deformylase [Rickettsiella grylli]
gi|159121246|gb|EDP46584.1| peptide deformylase [Rickettsiella grylli]
Length = 168
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + PII PD+RL+ IT FD L+++I +M ETMY A GIGLAA Q+ I K+L +
Sbjct: 1 MAIYPIIQLPDVRLRVPTTSITVFDATLQQLIDDMFETMYAAKGIGLAAPQIAISKKLAV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++ N + INP I+ K + + EGCLS+PGI++K R+ +++ AL+ GK +
Sbjct: 61 IDVTNNKSHTLCLINPTIV-EKKGEALLEEGCLSVPGIYDKAPRALWVKLQALDRNGKPY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI AEGLLA C+QHE+DHLNGK+F+++LS K+++ +K L IKK
Sbjct: 120 EIEAEGLLAHCIQHEVDHLNGKLFLDHLSPL-KQQLARKKLDKIKK 164
>gi|260914694|ref|ZP_05921160.1| peptide deformylase [Pasteurella dagmatis ATCC 43325]
gi|260631293|gb|EEX49478.1| peptide deformylase [Pasteurella dagmatis ATCC 43325]
Length = 170
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ YPD RLK +A+P+ E + +++I+ +M ETMYH GIGLAA+QVDIH++++
Sbjct: 1 MAKLNVLVYPDDRLKIVAKPVEEVNDKIREIVDDMFETMYHEEGIGLAATQVDIHQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ V INP+II E I EGCLSLPG + R +++ V AL+ G+ +
Sbjct: 61 IDVEGTKENQYVLINPEIIESCGETGI-EEGCLSLPGFRGFVPRKEKVTVKALDRNGEEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F +YLS K++R+ +K +K
Sbjct: 120 TLNADGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLVK 161
>gi|300115536|ref|YP_003762111.1| peptide deformylase [Nitrosococcus watsonii C-113]
gi|299541473|gb|ADJ29790.1| peptide deformylase [Nitrosococcus watsonii C-113]
Length = 167
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 111/163 (68%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I++YPD RL++ A+P+ D +++K+ +M ETMY A GIGLAA QV++ KQ+++
Sbjct: 1 MARLNILHYPDPRLRRKAQPVAVVDKSIRKLADDMLETMYQAPGIGLAAIQVNVPKQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS++ + V INP+II + + EGCLS+P IF + R+ I VH L+ EG+
Sbjct: 61 IDISEDKSSPLVLINPEIIARQGKAE-SEEGCLSVPEIFEPVTRAAEITVHYLDREGQKQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
E+ + LLA C+QHE+DHL GK+FI+Y S K++RI KK K
Sbjct: 120 ELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKR 162
>gi|90413779|ref|ZP_01221767.1| peptide deformylase [Photobacterium profundum 3TCK]
gi|90325248|gb|EAS41745.1| peptide deformylase [Photobacterium profundum 3TCK]
Length = 169
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL ++ +PD RL+ IA+P+ ++ I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSLLQVLTFPDERLRTIAKPVEAITPEIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+I E I EGCLS+PG + R+ + V AL+ +G F
Sbjct: 61 IDISEERDQPMVLINPEITDKRGEDGI-EEGCLSVPGSRALVPRAAEVSVKALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 SFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEK 161
>gi|15617090|ref|NP_240303.1| peptide deformylase [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219681842|ref|YP_002468228.1| peptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|219682397|ref|YP_002468781.1| peptide deformylase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|257471547|ref|ZP_05635546.1| peptide deformylase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
pisum)]
gi|11131992|sp|P57563.1|DEF_BUCAI RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767572|sp|B8D9R9.1|DEF_BUCA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767573|sp|B8D821.1|DEF_BUCAT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|25303709|pir||E84987 formylmethionine deformylase (EC 3.5.1.31) [imported] - Buchnera
sp. (strain APS)
gi|10039155|dbj|BAB13189.1| polypeptide deformylase [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219622130|gb|ACL30286.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624685|gb|ACL30840.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
Length = 173
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 115/163 (70%), Gaps = 3/163 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL I+YYPDIRL+ +A+P+ E + ++KI +M +TMY GIGLAA+QV+I Q+++
Sbjct: 1 MSLLKILYYPDIRLRILAKPVKEINKKIQKIANDMIDTMYQEEGIGLAATQVNIPLQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIY-NEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
++ + V INPKII KE I EGCLS+P I RS I+V A+N++G+
Sbjct: 61 VNTMEQKKNNLVLINPKII--KKEGDISIEEGCLSIPEYQASIPRSNYIQVQAVNLDGEK 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI A+ +L+IC+QHEIDHL GK+FI+YLS FK+ERI KKF K
Sbjct: 119 IEIEAKSILSICIQHEIDHLKGKLFIDYLSKFKRERIQKKFEK 161
>gi|298501230|ref|ZP_07011029.1| peptide deformylase [Vibrio cholerae MAK 757]
gi|297540102|gb|EFH76164.1| peptide deformylase [Vibrio cholerae MAK 757]
Length = 206
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 38 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 97
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 98 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 156
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 157 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 201
>gi|308047745|ref|YP_003911311.1| peptide deformylase [Ferrimonas balearica DSM 9799]
gi|307629935|gb|ADN74237.1| peptide deformylase [Ferrimonas balearica DSM 9799]
Length = 171
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 120/167 (71%), Gaps = 5/167 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + ++ +PD RL+ +AEP+T+F L++++ +M +TMY GIGLAA+Q++ H Q+++
Sbjct: 1 MAVREVLRFPDERLRTVAEPVTDFGPALQQLVDDMFDTMYEERGIGLAATQINEHVQVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYN--EGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D S++ ++ +VFINPKII +EK + EGCLS+PG++ K++R++ + A + EG
Sbjct: 61 MDHSEDRSEPKVFINPKII---EEKGHFTNEEGCLSVPGVYAKVERAEHVVFEAQDREGN 117
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
F + A+ LL+IC+QHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 118 PFTVEADELLSICIQHEMDHLLGKLFVDYLSPLKRQRIKQKLEKQAR 164
>gi|260775015|ref|ZP_05883915.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
gi|260609105|gb|EEX35264.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
Length = 173
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MSVLQVLTFPDERLRTVAKPVEKVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+I+ E I EGCLS+PG + R+ + V AL+ +GK +
Sbjct: 61 IDISETRDQPMVLINPEILDKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALDRDGKEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAK 161
>gi|89074760|ref|ZP_01161218.1| peptide deformylase [Photobacterium sp. SKA34]
gi|89049524|gb|EAR55085.1| peptide deformylase [Photobacterium sp. SKA34]
Length = 169
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++ II +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ NQ V +NPKI E I EGCLS+P + R+ + V AL+ GK +
Sbjct: 61 IDVSEERNQPMVLVNPKITEEHGEDGI-EEGCLSVPTARGFVPRAAGVSVTALDRNGKEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+GLLAIC+QHE+DHL GK+F++YLS K++R IK+ L+ IK+
Sbjct: 120 SFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQR-IKQKLEKIKR 164
>gi|323493839|ref|ZP_08098957.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
gi|323311973|gb|EGA65119.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
Length = 172
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S ++ V INP+II E I EGCLS+PG + R+ + V ALN +G+ F
Sbjct: 61 IDVSDTRDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAK 161
>gi|438130139|ref|ZP_20873457.1| peptide deformylase, partial [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434941699|gb|ELL48100.1| peptide deformylase, partial [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
Length = 149
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 114/149 (76%), Gaps = 1/149 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +G F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
E+ A+GLLAIC+QHE+DHL GK+FI+YLS
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLS 148
>gi|261250604|ref|ZP_05943179.1| peptide deformylase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417954288|ref|ZP_12597325.1| peptide deformylase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260939173|gb|EEX95160.1| peptide deformylase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342815556|gb|EGU50471.1| peptide deformylase [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 172
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I+ E I EGCLS+PG + R+ + V ALN +G+ F
Sbjct: 61 IDISETRDEPMVLINPEILEKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALNRDGEEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAK 161
>gi|334702671|ref|ZP_08518537.1| peptide deformylase [Aeromonas caviae Ae398]
Length = 170
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 114/166 (68%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ F L+ I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAILDVLRFPDERLRTVAAPVEAFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N + V INP+I+ S I EGCLS+PG + R++ ++V A + G F
Sbjct: 61 IDVSENREEQLVLINPEILEQSGSTGI-EEGCLSVPGNRALVPRAEWVKVRAQDRHGNTF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K ++
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165
>gi|427410654|ref|ZP_18900856.1| peptide deformylase [Sphingobium yanoikuyae ATCC 51230]
gi|425710984|gb|EKU74001.1| peptide deformylase [Sphingobium yanoikuyae ATCC 51230]
Length = 176
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 114/171 (66%), Gaps = 9/171 (5%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ PD RL+ I+ P+ D +L+++I +M ETMY A GIGLAA QV + K++L+
Sbjct: 1 MAILPILEAPDPRLRTISTPVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRILV 60
Query: 61 LDISKNNNQLQ---------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVH 111
+D+ + + + VFINP+I+ S E+ +YNEGCLS+P F +++R IR
Sbjct: 61 MDLQEPESDEEGAPPVKKPMVFINPEILKESDEQSVYNEGCLSVPDQFAEVERPAVIRAS 120
Query: 112 ALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
++ +G++ E EGLLA CLQHE+DHL G +FI++LS K++ ++KK K
Sbjct: 121 WMDRDGRIHEEQLEGLLATCLQHEMDHLEGVLFIDHLSRLKRDMLLKKLNK 171
>gi|389737496|ref|ZP_10190925.1| peptide deformylase [Rhodanobacter sp. 115]
gi|388434858|gb|EIL91786.1| peptide deformylase [Rhodanobacter sp. 115]
Length = 167
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 108/149 (72%), Gaps = 1/149 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ +PD RL+ A P+T FD LK+++ +M ETMY A G+GLAA+QV++H+ LL+
Sbjct: 1 MSVLSILEFPDPRLRTKAAPVTTFDGTLKQLVADMYETMYAANGVGLAATQVNVHRHLLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q IN +I+ Q+Y EGCLS PGI+ + R+ +++V A +++GK F
Sbjct: 61 IDMSEDRDQPLTLINAEILEKDG-AQVYQEGCLSFPGIYADVTRALKVKVKAQDLDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
AEG LA+ +QHE+DHL GK+F+++LS
Sbjct: 120 IYEAEGPLAVAVQHEMDHLAGKVFVDHLS 148
>gi|145633869|ref|ZP_01789590.1| peptide deformylase [Haemophilus influenzae 3655]
gi|145635938|ref|ZP_01791624.1| peptide deformylase [Haemophilus influenzae PittAA]
gi|229845579|ref|ZP_04465706.1| peptide deformylase [Haemophilus influenzae 6P18H1]
gi|144985241|gb|EDJ92084.1| peptide deformylase [Haemophilus influenzae 3655]
gi|145266797|gb|EDK06815.1| peptide deformylase [Haemophilus influenzae PittAA]
gi|229811514|gb|EEP47216.1| peptide deformylase [Haemophilus influenzae 6P18H1]
Length = 169
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+TE + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R +++ V AL+ +GK F
Sbjct: 61 IDVEGDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161
>gi|68249189|ref|YP_248301.1| peptide deformylase [Haemophilus influenzae 86-028NP]
gi|145629886|ref|ZP_01785678.1| peptide deformylase [Haemophilus influenzae 22.1-21]
gi|145637962|ref|ZP_01793602.1| peptide deformylase [Haemophilus influenzae PittHH]
gi|145639368|ref|ZP_01794973.1| peptide deformylase [Haemophilus influenzae PittII]
gi|145642285|ref|ZP_01797850.1| peptide deformylase [Haemophilus influenzae R3021]
gi|148826745|ref|YP_001291498.1| peptide deformylase [Haemophilus influenzae PittEE]
gi|148827778|ref|YP_001292531.1| peptide deformylase [Haemophilus influenzae PittGG]
gi|229846679|ref|ZP_04466787.1| peptide deformylase [Haemophilus influenzae 7P49H1]
gi|378696821|ref|YP_005178779.1| peptide deformylase [Haemophilus influenzae 10810]
gi|417841177|ref|ZP_12487282.1| Peptide deformylase [Haemophilus haemolyticus M19501]
gi|417841947|ref|ZP_12488042.1| Peptide deformylase [Haemophilus haemolyticus M19501]
gi|81336405|sp|Q4QMV6.1|DEF_HAEI8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|166198517|sp|A5UEB4.1|DEF_HAEIE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|166198518|sp|A5UH92.1|DEF_HAEIG RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|68057388|gb|AAX87641.1| peptide deformylase [Haemophilus influenzae 86-028NP]
gi|144977740|gb|EDJ87687.1| peptide deformylase [Haemophilus influenzae 22.1-21]
gi|145268853|gb|EDK08816.1| peptide deformylase [Haemophilus influenzae PittHH]
gi|145271415|gb|EDK11327.1| peptide deformylase [Haemophilus influenzae PittII]
gi|145273041|gb|EDK12922.1| peptide deformylase [Haemophilus influenzae 22.4-21]
gi|148716905|gb|ABQ99115.1| peptide deformylase [Haemophilus influenzae PittEE]
gi|148719020|gb|ABR00148.1| hypothetical protein CGSHiGG_06235 [Haemophilus influenzae PittGG]
gi|229810772|gb|EEP46490.1| peptide deformylase [Haemophilus influenzae 7P49H1]
gi|301169340|emb|CBW28939.1| peptide deformylase [Haemophilus influenzae 10810]
gi|309751783|gb|ADO81767.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2866]
gi|341947727|gb|EGT74368.1| Peptide deformylase [Haemophilus haemolyticus M19501]
gi|341949771|gb|EGT76372.1| Peptide deformylase [Haemophilus haemolyticus M19501]
Length = 169
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+TE + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R +++ V AL+ +GK F
Sbjct: 61 IDVEGDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161
>gi|88811384|ref|ZP_01126639.1| polypeptide deformylase [Nitrococcus mobilis Nb-231]
gi|88791273|gb|EAR22385.1| polypeptide deformylase [Nitrococcus mobilis Nb-231]
Length = 177
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 113/149 (75%), Gaps = 1/149 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I++YPD +L+ A+P+ + +++++ ++ ETMY A GIGLAA+QV+IH ++L+
Sbjct: 1 MAILDILHYPDPQLRIRAQPVEKVTDEVRRLVDDLFETMYDAPGIGLAATQVNIHWRVLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI++ N+ FINP+I+ E+++ EGCLS+PG F+ ++R++ ++VHA + G+ F
Sbjct: 61 VDITEAKNEPLAFINPQILERKGEEEM-QEGCLSVPGYFDTVRRAEWVKVHAQDRSGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
E+ +GLLA+C+QHEIDHL GK+F++YLS
Sbjct: 120 ELETDGLLAVCIQHEIDHLEGKLFVDYLS 148
>gi|374333832|ref|YP_005090519.1| peptide deformylase [Oceanimonas sp. GK1]
gi|372983519|gb|AEX99768.1| peptide deformylase [Oceanimonas sp. GK1]
Length = 169
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 114/164 (69%), Gaps = 1/164 (0%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILD 62
+L ++ +PD RL+ +A+P+ F L+ I+ +M ETMY GIGLAA+QVDIH++++++D
Sbjct: 4 VLEVLRFPDERLRTVAKPVDAFTPELQTIVDDMFETMYAEEGIGLAATQVDIHQRIIVID 63
Query: 63 ISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+S++ V INP+I+ I EGCLS+PG + R++R++V A + G+ FE+
Sbjct: 64 VSEDREHPLVLINPEILDSHGSTGI-EEGCLSVPGARALVPRAERVKVRAQDRHGETFEL 122
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K ++
Sbjct: 123 DADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKMEKMTRQ 166
>gi|398384447|ref|ZP_10542477.1| peptide deformylase [Sphingobium sp. AP49]
gi|397722606|gb|EJK83142.1| peptide deformylase [Sphingobium sp. AP49]
Length = 176
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 116/174 (66%), Gaps = 9/174 (5%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ PD RL+ I+ P+ D +L+++I +M +TMY A GIGLAA QV + K++L+
Sbjct: 1 MAILPILEAPDPRLRTISTPVEAIDDDLQRLIDDMFDTMYDAPGIGLAAIQVGVPKRVLV 60
Query: 61 LDISKNNNQLQ---------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVH 111
+D+ + ++ + VFINP+I+ S+E +YNEGCLS+P F +++R IR
Sbjct: 61 MDLQEPESEEEDAPPVKKPMVFINPEILKGSEELSVYNEGCLSVPDQFAEVERPAAIRAS 120
Query: 112 ALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
++ +G++ E EGLLA CLQHEIDHL G +FI++LS K++ ++KK K K
Sbjct: 121 WMDRDGRIHEEQLEGLLATCLQHEIDHLEGVLFIDHLSRLKRDMLLKKLNKARK 174
>gi|417839631|ref|ZP_12485804.1| Peptide deformylase [Haemophilus haemolyticus M19107]
gi|341951997|gb|EGT78540.1| Peptide deformylase [Haemophilus haemolyticus M19107]
Length = 169
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP++E + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVSEVNDAIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R ++++V AL+ +GK F
Sbjct: 61 IDVEGDKKNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVKVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 161
>gi|258622990|ref|ZP_05718005.1| peptide deformylase [Vibrio mimicus VM573]
gi|424810976|ref|ZP_18236310.1| peptide deformylase [Vibrio mimicus SX-4]
gi|258584773|gb|EEW09507.1| peptide deformylase [Vibrio mimicus VM573]
gi|342321987|gb|EGU17783.1| peptide deformylase [Vibrio mimicus SX-4]
Length = 169
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 116/166 (69%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++II +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 61 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 120 SFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 164
>gi|319897841|ref|YP_004136038.1| peptide deformylase [Haemophilus influenzae F3031]
gi|317433347|emb|CBY81725.1| peptide deformylase [Haemophilus influenzae F3031]
Length = 169
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK EP+TE + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVACEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R +++ V AL+ +GK F
Sbjct: 61 IDVEGDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K LK
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLK 161
>gi|258626114|ref|ZP_05720965.1| peptide deformylase [Vibrio mimicus VM603]
gi|262166814|ref|ZP_06034551.1| peptide deformylase [Vibrio mimicus VM223]
gi|262172812|ref|ZP_06040490.1| peptide deformylase [Vibrio mimicus MB-451]
gi|449146182|ref|ZP_21776974.1| peptide deformylase [Vibrio mimicus CAIM 602]
gi|258581640|gb|EEW06538.1| peptide deformylase [Vibrio mimicus VM603]
gi|261893888|gb|EEY39874.1| peptide deformylase [Vibrio mimicus MB-451]
gi|262026530|gb|EEY45198.1| peptide deformylase [Vibrio mimicus VM223]
gi|449078174|gb|EMB49116.1| peptide deformylase [Vibrio mimicus CAIM 602]
Length = 169
Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 116/166 (69%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 61 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 120 SFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 164
>gi|383817280|ref|ZP_09972657.1| peptide deformylase [Serratia sp. M24T3]
gi|383293900|gb|EIC82257.1| peptide deformylase [Serratia sp. M24T3]
Length = 169
Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+++PD RL+ +A+P+ E + +++I+ +M ETMY GIGLAA+QV+IH+++++
Sbjct: 1 MSVLQILHFPDDRLRIVAKPVKEVNAEIQQIVDDMFETMYAEEGIGLAATQVNIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++ + +Q V INP+++ S E I EGCLS+P + R+ +++ AL+ GK F
Sbjct: 61 IDVTDDKSQQLVLINPELLEQSGETGI-EEGCLSIPDQRGLVPRAANVKIRALDRNGKSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADELLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKMEK 161
>gi|456735002|gb|EMF59772.1| Peptide deformylase [Stenotrophomonas maltophilia EPM1]
Length = 170
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A I ++ +++I NM TMY A GIGLAA+QVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N+ +VFINP+I+ + +Y EGCLS+PGIF + R+ I V L+ G
Sbjct: 61 FMVIDVSEEKNEPRVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDRNG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ ++ A +LA C+QHE+DHL+GK+FI+YLS K+E + KK K K
Sbjct: 120 QEQQMEAGDVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167
>gi|294012439|ref|YP_003545899.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S]
gi|390166663|ref|ZP_10218921.1| N-formylmethionyl-tRNA deformylase [Sphingobium indicum B90A]
gi|292675769|dbj|BAI97287.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S]
gi|389590449|gb|EIM68439.1| N-formylmethionyl-tRNA deformylase [Sphingobium indicum B90A]
Length = 176
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 115/174 (66%), Gaps = 9/174 (5%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ PD RL+ I+ P+ D +L+++I +M ETMY A GIGLAA QV + K++L+
Sbjct: 1 MAILPILEAPDPRLRTISSPVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRVLV 60
Query: 61 LDISKNNNQLQ---------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVH 111
+D+ + + + VFINP+I+ S++ +YNEGCLS+P F +++R IR
Sbjct: 61 IDLQEPESDEEGAPPVKKPMVFINPEILDGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120
Query: 112 ALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
++ +G++ E EGLLA CLQHE+DHL G +FI++LS K++ ++KK K K
Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174
>gi|456358368|dbj|BAM92813.1| peptide deformylase [Agromonas oligotrophica S58]
Length = 175
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 118/173 (68%), Gaps = 7/173 (4%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+L II PD +L+ +++P+ + +++++ +M +TMY A GIGLAA QV +++
Sbjct: 1 MSLREIIILPDKQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60
Query: 61 LDISKNN-------NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHAL 113
+D++K + + +VFINP+II S E +Y EGCLS+P + +++R R+RV +
Sbjct: 61 MDLAKPDAEGGETKREPRVFINPEIIARSDELSVYEEGCLSIPEYYEEVERPARVRVRFI 120
Query: 114 NIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+++GK+ E AEGL A C+QHEIDHLNG +FI+YLS K++R++KKF K K+
Sbjct: 121 DLDGKLREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKR 173
>gi|421492964|ref|ZP_15940322.1| DEF [Morganella morganii subsp. morganii KT]
gi|455737809|ref|YP_007504075.1| Peptide deformylase [Morganella morganii subsp. morganii KT]
gi|400192592|gb|EJO25730.1| DEF [Morganella morganii subsp. morganii KT]
gi|455419372|gb|AGG29702.1| Peptide deformylase [Morganella morganii subsp. morganii KT]
Length = 170
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 109/165 (66%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL + ++PD L++ A+P+T FD LK + +MTETMY GIGLAA QV + K+++I
Sbjct: 1 MALLTLRHFPDPCLRETAQPVTVFDDELKTFVTDMTETMYAERGIGLAAPQVGVCKRVII 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q INP+ I E + + GCLSLP + + +R + V +I G +
Sbjct: 61 VDVSENRDQPMALINPEFIQCDGEMMMMD-GCLSLPESYTETQRYSAVTVRYQDINGAEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ AEGL A CLQHEIDHLNGK+FI++LS K++RI KK K +K
Sbjct: 120 TLEAEGLQAGCLQHEIDHLNGKLFIDHLSPLKRQRIEKKVKKTLK 164
>gi|417949580|ref|ZP_12592714.1| peptide deformylase [Vibrio splendidus ATCC 33789]
gi|342808089|gb|EGU43259.1| peptide deformylase [Vibrio splendidus ATCC 33789]
Length = 171
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ PD RL+ +A+P+ E ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+II E I EGCLS+PG + R+ + V AL+ +G F
Sbjct: 61 IDISETRDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAK 161
>gi|157830807|pdb|1DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr,
9 Structures
gi|256599481|pdb|2KMN|A Chain A, Solution Structure Of Peptide Deformylase Complexed With
Actinonin
Length = 147
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 114/148 (77%), Gaps = 1/148 (0%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++
Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 DISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK FE
Sbjct: 61 DVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLS 149
+ A+GLLAIC+QHE+DHL GK+F++YLS
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFMDYLS 147
>gi|148978497|ref|ZP_01814971.1| peptide deformylase [Vibrionales bacterium SWAT-3]
gi|145962404|gb|EDK27684.1| peptide deformylase [Vibrionales bacterium SWAT-3]
Length = 171
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ PD RL+ +A+P+ E ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+II E I EGCLS+PG + R+ + V AL+ +G F
Sbjct: 61 IDISETRDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRDGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAK 161
>gi|254507283|ref|ZP_05119419.1| peptide deformylase [Vibrio parahaemolyticus 16]
gi|219549743|gb|EED26732.1| peptide deformylase [Vibrio parahaemolyticus 16]
Length = 172
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+II E I EGCLS+PG + R+ + V ALN +G+ +
Sbjct: 61 IDISETRDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALNRDGEEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAK 161
>gi|406937039|gb|EKD70620.1| peptide deformylase [uncultured bacterium]
Length = 166
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 119/166 (71%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL+ A +T+ D +L + I +M ETMY A G+GLAA+QV+IH+Q+ +
Sbjct: 1 MAILEILQYPDPRLRIKAALVTKVDDDLLRQIDDMYETMYVAKGVGLAATQVNIHQQIFV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q +NP+II + + Q +EGCLS+ G ++K++R+ ++R+ + ++ K
Sbjct: 61 MDISQERDQKVCVLNPEII-HKEGIQYESEGCLSVAGAYDKVERALKVRMRGIGLDMKPI 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI AE LLA+C+QHEIDHLNG +FI++LS K++RI KK KN ++
Sbjct: 120 EIEAEDLLAVCIQHEIDHLNGILFIDHLSRLKQDRIRKKIDKNNRR 165
>gi|414168993|ref|ZP_11424830.1| peptide deformylase [Afipia clevelandensis ATCC 49720]
gi|410885752|gb|EKS33565.1| peptide deformylase [Afipia clevelandensis ATCC 49720]
Length = 172
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 112/162 (69%), Gaps = 2/162 (1%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
II PD +L+ I++P+ + +++ ++ +M +TMY A GIGLAA QV + +L+ +D+SK
Sbjct: 7 IIILPDKQLRLISKPVEKITPDIRTLVDDMFQTMYDAPGIGLAAIQVAVPLRLITMDLSK 66
Query: 66 NNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEII 123
+ + VFINP+I+ S E +Y EGCLS+P + +++R R+RV +++EG E
Sbjct: 67 KEGEKEPRVFINPEILASSDELSVYEEGCLSIPEYYEEVERPARVRVRFMDLEGVTREED 126
Query: 124 AEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
AEGL A C+QHEIDHLNG +F++YLS K++R++KKF K K
Sbjct: 127 AEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAK 168
>gi|260583339|ref|ZP_05851112.1| peptide deformylase [Haemophilus influenzae NT127]
gi|260093610|gb|EEW77525.1| peptide deformylase [Haemophilus influenzae NT127]
Length = 169
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+ E + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R ++++V AL+ +GK F
Sbjct: 61 IDVEGDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVKVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161
>gi|398819145|ref|ZP_10577706.1| peptide deformylase [Bradyrhizobium sp. YR681]
gi|398230148|gb|EJN16209.1| peptide deformylase [Bradyrhizobium sp. YR681]
Length = 174
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 115/172 (66%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD +L+ +++PI + ++K+ +M ETMY A GIGLAA Q+ +L+
Sbjct: 1 MALREIIILPDRQLRLVSKPIEKVTSEIRKLADDMLETMYDAPGIGLAAIQIAQPLRLIT 60
Query: 61 LDISKNNNQ------LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K + +VFINP+II S+E +Y EGCLS+P + +++R ++RV +
Sbjct: 61 MDLAKPDESGETTPLPRVFINPEIIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++GK+ E AEGL A C+QHEIDHLNG +F++YLS K++R+IKKF K K+
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVIKKFEKAAKR 172
>gi|27383220|ref|NP_774749.1| peptide deformylase [Bradyrhizobium japonicum USDA 110]
gi|39930882|sp|Q89BN9.1|DEF_BRAJA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|27356394|dbj|BAC53374.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110]
Length = 174
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 116/172 (67%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD +L+ +++PI + ++K+ +M ETMY A GIGLAA Q+ +L+
Sbjct: 1 MALREIIILPDKQLRLVSKPIEKVTTEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60
Query: 61 LDISKNNN------QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K + + +VFINP++I S+E +Y EGCLS+P + +++R ++RV +
Sbjct: 61 MDLAKRDENGETKPEPRVFINPEVIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++GK+ E AEGL A C+QHEIDHLNG +F++YLS K++R++KKF K K+
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEKAAKR 172
>gi|190576007|ref|YP_001973852.1| peptide deformylase [Stenotrophomonas maltophilia K279a]
gi|424670320|ref|ZP_18107345.1| peptide deformylase [Stenotrophomonas maltophilia Ab55555]
gi|229487565|sp|B2FIR4.1|DEF_STRMK RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|190013929|emb|CAQ47569.1| putative peptide deformylase [Stenotrophomonas maltophilia K279a]
gi|401070778|gb|EJP79292.1| peptide deformylase [Stenotrophomonas maltophilia Ab55555]
Length = 170
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 112/168 (66%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A I ++ +++I NM TMY A GIGLAA+QVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N+ VFINP+I+ + +Y EGCLS+PGIF + R+ I V L+ G
Sbjct: 61 FMVIDVSEEKNEPHVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDRNG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ ++ A +LA C+QHE+DHL+GK+FI+YLS K+E + KK K K
Sbjct: 120 QEQQMEAGDVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167
>gi|84393441|ref|ZP_00992198.1| peptide deformylase [Vibrio splendidus 12B01]
gi|86147129|ref|ZP_01065445.1| peptide deformylase [Vibrio sp. MED222]
gi|84375957|gb|EAP92847.1| peptide deformylase [Vibrio splendidus 12B01]
gi|85835013|gb|EAQ53155.1| peptide deformylase [Vibrio sp. MED222]
Length = 170
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 108/162 (66%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ PD RL+ +A+P+ E ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I E I EGCLS+PG + R+ + V AL+ EG F
Sbjct: 61 IDISETRDEPMVLINPEITDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDREGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAK 161
>gi|213855562|ref|ZP_03383802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
Length = 148
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 113/149 (75%), Gaps = 1/149 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ G F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRNGNPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
E+ A+GLLAIC+QHE+DHL GK+FI+YLS
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLS 148
>gi|407976014|ref|ZP_11156916.1| peptide deformylase [Nitratireductor indicus C115]
gi|407428515|gb|EKF41197.1| peptide deformylase [Nitratireductor indicus C115]
Length = 176
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 111/164 (67%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P++ PD L++ ++P+ D L+K +M +TMY A GIGLAA QV ++L+
Sbjct: 1 MTIKPLVLLPDPILRETSKPVERVDEALRKFADDMLDTMYDAPGIGLAAIQVGEPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S + + V +NP+I+ S + ++ EGCLS+P + ++R R+ V+ ++IEGK
Sbjct: 61 VDVSDKDEEPAPLVVLNPEIVARSDARNVHEEGCLSIPDYYADVERPARVTVNYMDIEGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
M + A+GLLA CLQHEIDHLNG +FI+YLS K++ +++KF K
Sbjct: 121 MQTVEADGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFRK 164
>gi|389878555|ref|YP_006372120.1| N-formylmethionyl-tRNA deformylase [Tistrella mobilis KA081020-065]
gi|388529339|gb|AFK54536.1| N-formylmethionyl-tRNA deformylase [Tistrella mobilis KA081020-065]
Length = 184
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 112/166 (67%), Gaps = 4/166 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M ++PI+ PD RL K A P+ D ++++++ +M ETMY A GIGLAA QV + +++++
Sbjct: 1 MAIMPILTAPDPRLTKTATPVARVDDDVRRLMDDMLETMYAAEGIGLAAPQVGVLQRVIV 60
Query: 61 LDIS---KNNNQLQVFI-NPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIE 116
+D+ + +F+ NP+I+W S E + Y EGCLSLP + + R +RV L+ +
Sbjct: 61 IDVCWGREGKEPTPLFMANPEIVWVSDEDKTYEEGCLSLPSHYADVVRPAAVRVRYLDRD 120
Query: 117 GKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
G + EI +GLLA+C+QHEIDHL+G +F+++LS+ K+ I++K +K
Sbjct: 121 GAVQEIEDDGLLAVCVQHEIDHLDGVLFVDHLSSIKRNMILRKLVK 166
>gi|157834784|pdb|2DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr,
20 Structures
Length = 147
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 113/148 (76%), Gaps = 1/148 (0%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
+L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++
Sbjct: 1 AVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 DISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK FE
Sbjct: 61 DVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLS 149
+ A+GLLAIC+QHE+DHL GK+F++YLS
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFMDYLS 147
>gi|52842801|ref|YP_096600.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|54295432|ref|YP_127847.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
gi|54298584|ref|YP_124953.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
gi|148358671|ref|YP_001249878.1| peptide deformylase [Legionella pneumophila str. Corby]
gi|296108239|ref|YP_003619940.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
gi|378778490|ref|YP_005186929.1| peptide deformylase [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|397665185|ref|YP_006506723.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
gi|397668268|ref|YP_006509805.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
gi|52629912|gb|AAU28653.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|53752369|emb|CAH13801.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
gi|53755264|emb|CAH16758.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
gi|148280444|gb|ABQ54532.1| peptide deformylase [Legionella pneumophila str. Corby]
gi|295650141|gb|ADG25988.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
gi|307611474|emb|CBX01145.1| hypothetical protein LPW_28441 [Legionella pneumophila 130b]
gi|364509306|gb|AEW52830.1| peptide deformylase [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|395128596|emb|CCD06814.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
gi|395131679|emb|CCD09972.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
Length = 170
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+Y PD RL+KIA+P+ FD +L+ +I +M +TMY A G+GLAA Q+ + +L +
Sbjct: 1 MAIRKILYLPDERLRKIAKPVETFDESLQTLINDMFDTMYDARGVGLAAPQIGVSLRLSV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + + V +NP+I+ EK+ + EGCLS+PG ++ + R++++ V AL+ GK F
Sbjct: 61 IDIVGDKKEQIVIVNPEIVSSHGEKE-FEEGCLSVPGAYDTVVRAEKVTVKALDRFGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKK 153
EI EGLLA CLQHEIDH+NGK+F++ LS K+
Sbjct: 120 EITGEGLLAECLQHEIDHMNGKLFVDMLSPLKR 152
>gi|226329516|ref|ZP_03805034.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198]
gi|225202702|gb|EEG85056.1| peptide deformylase [Proteus penneri ATCC 35198]
Length = 174
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L +++YPD RL+ IA+P+ + D ++KI+ +M ETMY GIGLAA+QV+IH+++++
Sbjct: 1 MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVNIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP+++ + + I EGCLS+P I R++ ++V AL+ G+ F
Sbjct: 61 IDVSETRDERLVLINPELLDANGDTGI-EEGCLSIPEQRAFIPRAEHVKVRALDYNGQPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEK 161
>gi|386720125|ref|YP_006186451.1| peptide deformylase [Stenotrophomonas maltophilia D457]
gi|384079687|emb|CCH14289.1| Peptide deformylase [Stenotrophomonas maltophilia D457]
Length = 170
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 112/168 (66%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A I ++ +++I NM TMY A GIGLAA+QVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAALIDAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N+ VFINP+I+ + +Y EGCLS+PGIF + R+ I V L+ G
Sbjct: 61 FMVIDVSEEKNEPHVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDRNG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ ++ A +LA C+QHE+DHL+GK+FI+YLS K+E + KK K K
Sbjct: 120 QEQQLEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167
>gi|345429246|ref|YP_004822364.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
gi|301155307|emb|CBW14773.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
Length = 169
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+ E + +++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVVEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ E I EGCLS+PG + R +++ V AL+ GK F
Sbjct: 61 IDIEGDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 161
>gi|350563946|ref|ZP_08932766.1| peptide deformylase [Thioalkalimicrobium aerophilum AL3]
gi|349778467|gb|EGZ32823.1| peptide deformylase [Thioalkalimicrobium aerophilum AL3]
Length = 170
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ YPD L++ P+ + + ++I +M TMY A GIGLAA Q+ + +++++
Sbjct: 1 MQKLELVLYPDAGLREKCRPVADMSDRIDQLIDDMFYTMYEAPGIGLAAPQIAVQERIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++N++ INP+II E + EGCLSLPGI+ ++KR + I+V ALN +G+
Sbjct: 61 VDVSEDNSKPLALINPEIIGTDGEIS-WEEGCLSLPGIYGEVKRPRHIKVRALNRDGQPI 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IA+ LLA+C+QHEIDHLNG +F ++LS K+ R++ KF K
Sbjct: 120 EMIADDLLAVCIQHEIDHLNGVLFTDHLSALKRTRLLHKFKK 161
>gi|408821886|ref|ZP_11206776.1| peptide deformylase [Pseudomonas geniculata N1]
Length = 170
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 112/168 (66%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A I ++ +++I NM TMY A GIGLAA+QVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N+ VFINP+I+ + +Y EGCLS+PGIF + R+ I V L+ G
Sbjct: 61 FMVIDVSEEKNEPHVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDRNG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ ++ A +LA C+QHE+DHL+GK+FI+YLS K+E + KK K K
Sbjct: 120 QEQQMEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167
>gi|395791605|ref|ZP_10471061.1| peptide deformylase [Bartonella alsatica IBS 382]
gi|395407908|gb|EJF74528.1| peptide deformylase [Bartonella alsatica IBS 382]
Length = 178
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P++ PD L+++++P+ D L+K+ +M +TMY A G+GLAA Q+ I ++L+
Sbjct: 1 MPIKPLVTLPDPILREVSKPVEHIDTALQKLADDMLDTMYDAKGVGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S N+ Q V INP+I+W S E I EGCLS+P + +++R KR+ V + EGK
Sbjct: 61 IDVSGNDAQKNPLVIINPEILWLSNEHNICKEGCLSIPEYYAEVERPKRLCVCYRDREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
EI A+ LLA CLQHEIDHLNG++FI+++S K++ +I+KF K +
Sbjct: 121 QTEIEADHLLATCLQHEIDHLNGRLFIDHISKIKRDMVIRKFKKRAR 167
>gi|254523595|ref|ZP_05135650.1| peptide deformylase [Stenotrophomonas sp. SKA14]
gi|344209026|ref|YP_004794167.1| peptide deformylase [Stenotrophomonas maltophilia JV3]
gi|219721186|gb|EED39711.1| peptide deformylase [Stenotrophomonas sp. SKA14]
gi|343780388|gb|AEM52941.1| peptide deformylase [Stenotrophomonas maltophilia JV3]
Length = 170
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 112/168 (66%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A I ++ +++I NM TMY A GIGLAA+QVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ N+ VFINP+I+ + +Y EGCLS+PGIF + R+ I V L+ G
Sbjct: 61 FMVIDVSEEKNEPHVFINPEIVAKDGGR-VYQEGCLSVPGIFADVTRADTITVKYLDRNG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ ++ A +LA C+QHE+DHL+GK+FI+YLS K+E + KK K K
Sbjct: 120 QEQQLEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167
>gi|334144600|ref|YP_004537756.1| peptide deformylase [Thioalkalimicrobium cyclicum ALM1]
gi|333965511|gb|AEG32277.1| Peptide deformylase [Thioalkalimicrobium cyclicum ALM1]
Length = 170
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ YPD L++ P+ E + + ++I +M TMY A GIGLAA QV + +++++
Sbjct: 1 MQKLELVLYPDTGLREKCRPVAEMNDRIDRLIDDMFYTMYEAPGIGLAAPQVAVQERVIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++N++ INP+II + + EGCLSLPGI+ ++KR + I+V LN +G+
Sbjct: 61 VDVSEDNSKPIALINPEIIGAEGDIS-WEEGCLSLPGIYGEVKRPRHIKVRGLNRDGQHT 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IA+ LLA+C+QHEIDHLNG +F ++LS K+ R++ KF K
Sbjct: 120 EMIADDLLAVCIQHEIDHLNGVLFTDHLSTLKRTRLLHKFKK 161
>gi|325577099|ref|ZP_08147583.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
gi|325160681|gb|EGC72802.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
Length = 175
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+ E + +++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 7 MTALNVLIYPDDHLKIVCEPVAEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 66
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ E I EGCLS+PG + R +++ V AL+ GK F
Sbjct: 67 IDIEGDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEF 125
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 126 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 167
>gi|419838551|ref|ZP_14361976.1| peptide deformylase [Haemophilus haemolyticus HK386]
gi|386910316|gb|EIJ74973.1| peptide deformylase [Haemophilus haemolyticus HK386]
Length = 169
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+TE + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R +++ V AL+ +GK F
Sbjct: 61 IDVEGDKQNQLVLINPEILVSEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 ILDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 161
>gi|261213229|ref|ZP_05927511.1| peptide deformylase [Vibrio sp. RC341]
gi|260837503|gb|EEX64206.1| peptide deformylase [Vibrio sp. RC341]
Length = 190
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 116/166 (69%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 82 IDISETRDEPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVSRAAEVTVKALDRNGQEY 140
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 141 RFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 185
>gi|374572311|ref|ZP_09645407.1| peptide deformylase [Bradyrhizobium sp. WSM471]
gi|374420632|gb|EHR00165.1| peptide deformylase [Bradyrhizobium sp. WSM471]
Length = 174
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 117/172 (68%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD +L+ +++PI + ++K+ +M ETMY A GIGLAA Q+ +L+
Sbjct: 1 MALREIIILPDKQLRLVSKPIEKVTPEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60
Query: 61 LDISKNNN------QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K + + +VFINP+II S++ +Y EGCLS+P + +++R ++RV ++
Sbjct: 61 MDLAKPDQDGETKPEPRVFINPEIIASSEDLSVYEEGCLSIPEYYEEVERPAKVRVRYMD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++GK+ E AEGL A C+QHEIDHLNG +F++YLS K++R++KKF K K+
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEKAAKR 172
>gi|16272565|ref|NP_438782.1| peptide deformylase [Haemophilus influenzae Rd KW20]
gi|260581531|ref|ZP_05849338.1| peptide deformylase [Haemophilus influenzae RdAW]
gi|1169264|sp|P44786.1|DEF_HAEIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|1573618|gb|AAC22282.1| polypeptide deformylase (def) [Haemophilus influenzae Rd KW20]
gi|260091805|gb|EEW75761.1| peptide deformylase [Haemophilus influenzae RdAW]
Length = 169
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+T+ + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R +++ V AL+ +GK F
Sbjct: 61 IDVEGDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161
>gi|145631964|ref|ZP_01787717.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
R3021]
gi|386266649|ref|YP_005830141.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2846]
gi|144982378|gb|EDJ89955.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
R3021]
gi|309973885|gb|ADO97086.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2846]
Length = 169
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+ E + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R +++ V AL+ +GK F
Sbjct: 61 IDVEGDKQNQFVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161
>gi|419802860|ref|ZP_14328040.1| peptide deformylase [Haemophilus parainfluenzae HK262]
gi|419845517|ref|ZP_14368784.1| peptide deformylase [Haemophilus parainfluenzae HK2019]
gi|385189100|gb|EIF36569.1| peptide deformylase [Haemophilus parainfluenzae HK262]
gi|386415385|gb|EIJ29917.1| peptide deformylase [Haemophilus parainfluenzae HK2019]
Length = 169
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP+ E + +++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPDDHLKIVCEPVAEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ E I EGCLS+PG + R +++ V AL+ GK F
Sbjct: 61 IDIEGDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVK 161
>gi|154247233|ref|YP_001418191.1| peptide deformylase [Xanthobacter autotrophicus Py2]
gi|154161318|gb|ABS68534.1| peptide deformylase [Xanthobacter autotrophicus Py2]
Length = 172
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 112/164 (68%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M PI+ P+ +L+ ++ + + D +KK++ +M +TMY A GIGLAA QV + ++++
Sbjct: 1 MATRPILIIPEPKLRTLSASVEKIDSEVKKLVEDMFDTMYDAPGIGLAAIQVGVQRRVVT 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+++ + INP+II S+E +Y EGCLS+P + +++R R+ V +IEG+
Sbjct: 61 IDVAREGEAKKPIALINPEIIAASEETSVYAEGCLSIPEYYEEVERPARVTVRFQDIEGQ 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ E+ A+GL A C+QHEIDHLNG +FI+++S K++R+IKKF K
Sbjct: 121 VREVAADGLFATCVQHEIDHLNGVLFIDHISKLKRDRVIKKFTK 164
>gi|15603424|ref|NP_246498.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
Pm70]
gi|378775409|ref|YP_005177652.1| peptide deformylase [Pasteurella multocida 36950]
gi|383311410|ref|YP_005364220.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
HN06]
gi|386835433|ref|YP_006240752.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
3480]
gi|417851635|ref|ZP_12497338.1| peptide deformylase [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|417854376|ref|ZP_12499682.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|425064280|ref|ZP_18467405.1| Peptide deformylase [Pasteurella multocida subsp. gallicida X73]
gi|425066437|ref|ZP_18469557.1| Peptide deformylase [Pasteurella multocida subsp. gallicida P1059]
gi|13431442|sp|P57948.1|DEF_PASMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|12721951|gb|AAK03643.1| Def [Pasteurella multocida subsp. multocida str. Pm70]
gi|338218066|gb|EGP03874.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|338218860|gb|EGP04587.1| peptide deformylase [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|356597957|gb|AET16683.1| peptide deformylase [Pasteurella multocida 36950]
gi|380872682|gb|AFF25049.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
HN06]
gi|385202138|gb|AFI46993.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
3480]
gi|404381222|gb|EJZ77700.1| Peptide deformylase [Pasteurella multocida subsp. gallicida X73]
gi|404381455|gb|EJZ77928.1| Peptide deformylase [Pasteurella multocida subsp. gallicida P1059]
Length = 170
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ YPD RLK IA+P+ E + +++I+ NM ETMY GIGLAA+QV+IH++++
Sbjct: 1 MARLNVLVYPDERLKIIAKPVVEVNDEIREIVDNMFETMYLEEGIGLAATQVNIHQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ V INP+II E I EGCLSLPG + R +++ + AL+ G+ +
Sbjct: 61 IDVEGTKENQYVLINPEIIDSCGETGI-EEGCLSLPGFRGFVPRKEKVTIKALDRHGEEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ AEGLLAIC+QHEIDHLNG +F +YLS K++R+ +K LK
Sbjct: 120 TLSAEGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLLK 161
>gi|350552659|ref|ZP_08921855.1| Peptide deformylase [Thiorhodospira sibirica ATCC 700588]
gi|349793334|gb|EGZ47170.1| Peptide deformylase [Thiorhodospira sibirica ATCC 700588]
Length = 180
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 117/167 (70%), Gaps = 3/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+++PD RL++ A+P+ D +++++ +M ETMY A GIGLAA Q+++ Q+++
Sbjct: 1 MAIYEILHFPDPRLRQKAKPVQVVDAEIQQLVADMFETMYAAKGIGLAAVQINVPLQVIV 60
Query: 61 LDISKNN--NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+ ++K N+ FINP+II + + + EGCLS+PG + ++R++RIRV AL+ EG
Sbjct: 61 MHLNKEGEENRPICFINPEII-HREGTMPWEEGCLSVPGFYENVQRAERIRVRALDREGN 119
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
FE+ A+GLL +C+QHE+DHLNGK+F+++LS K+ RI K K +
Sbjct: 120 PFELNADGLLGVCIQHEMDHLNGKLFVDHLSFLKRSRIQSKLQKQAR 166
>gi|400405857|ref|YP_006588716.1| peptide deformylase [secondary endosymbiont of Ctenarytaina
eucalypti]
gi|400364220|gb|AFP85288.1| peptide deformylase [secondary endosymbiont of Ctenarytaina
eucalypti]
Length = 171
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 115/162 (70%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL ++ YPD RL+K+A + + ++ I+ NM MY GIGLAA+QVDIH+++++
Sbjct: 1 MSLLQVLRYPDERLRKVAAFVPNVNDTVRSIVDNMFGAMYAKDGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + + R+K+I+V AL+ G F
Sbjct: 61 IDLSENRDRRLVLINPELLEKSGETGI-EEGCLSIPAYRSFVPRAKKIKVRALDRNGNNF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AE LLAIC+QHE+DHL G++F++YLS K++RI +K K
Sbjct: 120 ELEAEDLLAICIQHEMDHLMGRLFVDYLSPLKRQRIREKIKK 161
>gi|407069540|ref|ZP_11100378.1| peptide deformylase [Vibrio cyclitrophicus ZF14]
Length = 170
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 108/162 (66%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ PD RL+ +A+P+ E ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I E I EGCLS+PG + R+ + V AL+ EG F
Sbjct: 61 IDISETRDEPIVLINPEITEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDREGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 120 TFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAK 161
>gi|319780347|ref|YP_004139823.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166235|gb|ADV09773.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 176
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 112/164 (68%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P+I PD L+++++P+ D L+K+ +M TMY A GIGLAA Q+ +LL+
Sbjct: 1 MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRLLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K + VFINP+I+ + + +Y EGCLS+P + +++R +RV L+ +GK
Sbjct: 61 IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ EI AEGL+A CLQHEIDHLNG +FI+++S K++ ++KKF K
Sbjct: 121 LQEIEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKK 164
>gi|418407893|ref|ZP_12981210.1| peptide deformylase [Agrobacterium tumefaciens 5A]
gi|358005879|gb|EHJ98204.1| peptide deformylase [Agrobacterium tumefaciens 5A]
Length = 170
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ + PI + D + ++ +M ETMY A GIGLAA QV + +++L+
Sbjct: 1 MTIKPLIILPDPVLRQQSRPIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ + + + VFINP+I+ S + Y EGCLS+P + +++R + V ++ +GK
Sbjct: 61 IDVSREDEEKKPVVFINPEILKVSDDVSAYEEGCLSIPDYYAEVERPASLTVRYVDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K+E +IKKF K +
Sbjct: 121 QQTVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIKKFTKAAR 167
>gi|410446957|ref|ZP_11301059.1| peptide deformylase [SAR86 cluster bacterium SAR86E]
gi|409979944|gb|EKO36696.1| peptide deformylase [SAR86 cluster bacterium SAR86E]
Length = 163
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ +PD RL+K+A P+ +FD +L+KI +M ETMY GIGLAA+QVDIH ++++
Sbjct: 1 MARLKVLTFPDPRLRKVAAPVIKFDKSLEKITSDMLETMYSEDGIGLAATQVDIHMRIIV 60
Query: 61 LDISKNNNQLQVFINPKI-IWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+DIS+ N+ ++FINP+ I K + EGCLS+PG+ +I R I + +I G +
Sbjct: 61 MDISEARNEPKIFINPEFKILNDKSLLSFIEGCLSVPGVSEEITRPDNIILTWQDINGTI 120
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E GLL +C+QHEIDHL GK+ ++YLS K++RI KK K
Sbjct: 121 HEDKPSGLLTVCIQHEIDHLEGKLMVDYLSPLKRDRIRKKATK 163
>gi|319760357|ref|YP_004124295.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF]
gi|318039071|gb|ADV33621.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF]
Length = 168
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 114/162 (70%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I++YPD RL+K A+ +++ + K+IIF+M +TMY GIGLAA+QVDI +Q+++
Sbjct: 1 MSILKILHYPDKRLRKTAKFVSKISKHTKRIIFDMFDTMYAQQGIGLAATQVDIDQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ +N Q VFINP II EGCLS+P I I RSK+I V +LN +G +F
Sbjct: 61 IDLYQNITQRLVFINPIIIKKIGIIHTV-EGCLSIPKIKESIPRSKQIIVRSLNQDGNIF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI A LL++C+QHEIDHL GK+FI+YLS K +RI KK K
Sbjct: 120 EITATDLLSVCIQHEIDHLLGKLFIDYLSPLKIKRINKKIQK 161
>gi|365890026|ref|ZP_09428635.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
sp. STM 3809]
gi|365334182|emb|CCE01166.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
sp. STM 3809]
Length = 175
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 117/172 (68%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+L II PD +L+ +++P+ + +++++ +M +TMY A GIGLAA QV +++
Sbjct: 1 MSLREIIILPDRQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPVRVIT 60
Query: 61 LDISKNNN------QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K ++ + +VFINP+I+ S E +Y EGCLS+P + +++R R+RV +
Sbjct: 61 MDLAKPDSGGETKREPRVFINPEIVAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+EG + E AEGL A C+QHEIDHLNG +FI+YLS K++R++KKF K K+
Sbjct: 121 LEGVLREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKR 172
>gi|387126149|ref|YP_006294754.1| peptide deformylase [Methylophaga sp. JAM1]
gi|386273211|gb|AFI83109.1| Peptide deformylase [Methylophaga sp. JAM1]
Length = 167
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 117/166 (70%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+++PD RL+ A+PI + ++++ NM ETMY A GIGLAA+QV+ K+L++
Sbjct: 1 MARLNILHFPDPRLRLKAKPIEKVTDEIRQLAHNMLETMYDAPGIGLAATQVNEQKRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + INP++I E++ GCLS+P + + R+ IRV AL+++G+ F
Sbjct: 61 IDVSEDKSSPLFLINPELIETEGEREFEE-GCLSVPEAYETVTRADTIRVRALDLQGETF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+G+LA C+QHEIDHL GK+F++YLSN K++RI K+ K+ K+
Sbjct: 120 EMDADGILATCIQHEIDHLEGKLFVDYLSNLKRQRIKKRLEKHQKQ 165
>gi|395792602|ref|ZP_10472026.1| peptide deformylase [Bartonella vinsonii subsp. arupensis Pm136co]
gi|423713263|ref|ZP_17687523.1| peptide deformylase [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395423304|gb|EJF89499.1| peptide deformylase [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395432159|gb|EJF98148.1| peptide deformylase [Bartonella vinsonii subsp. arupensis Pm136co]
Length = 176
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 111/160 (69%), Gaps = 2/160 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + ++ PD L++I++P+ D L+++ +M ETMYHA G+GLAA Q+ I ++L+
Sbjct: 1 MPIKSLVTLPDPILREISKPVEHIDSALQQLADDMLETMYHAKGVGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S N++ V INP+I+W S E+ IY EGCLS+P + +++R KR+ V N EGK
Sbjct: 61 IDVSGNDDAKNPLVIINPEILWLSDERSIYKEGCLSIPEYYAEVERPKRLCVRYQNREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIK 158
EI A+ LLA CLQHEIDHLNG +FI+++S K++ +I+
Sbjct: 121 QTEIEADNLLATCLQHEIDHLNGCLFIDHISKLKRDMVIR 160
>gi|310815113|ref|YP_003963077.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
gi|308753848|gb|ADO41777.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
Length = 173
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 109/164 (66%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT PI+ +PD RL+ IA+P+ + ++++ +M ETMY A GIGLA QV +++++
Sbjct: 1 MTTRPILIHPDPRLRAIAKPLPDISDEIRRLADDMLETMYDAPGIGLAGPQVGQLQRIIV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD +K+ + Q V +NP+I+W S ++ +Y EGCLS+P + +++R ++V L++ G
Sbjct: 61 LDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGCLSIPDQYAEVERPASVKVRWLDLNGN 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ EGL A C+QHEIDHL+GK+FI+YL K++ I +K K
Sbjct: 121 EQDREMEGLWATCVQHEIDHLDGKLFIDYLGPMKRQLITRKMEK 164
>gi|262402048|ref|ZP_06078612.1| peptide deformylase [Vibrio sp. RC586]
gi|262351694|gb|EEZ00826.1| peptide deformylase [Vibrio sp. RC586]
Length = 169
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++II +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V A + G+ +
Sbjct: 61 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKAQDRNGQEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K+ RI +K K
Sbjct: 120 SFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEK 161
>gi|385232665|ref|YP_005794007.1| peptide deformylase [Ketogulonicigenium vulgare WSH-001]
gi|343461576|gb|AEM40011.1| Peptide deformylase [Ketogulonicigenium vulgare WSH-001]
Length = 186
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 109/164 (66%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT PI+ +PD RL+ IA+P+ + ++++ +M ETMY A GIGLA QV +++++
Sbjct: 14 MTTRPILIHPDPRLRAIAKPLPDISDEIRRLADDMLETMYDAPGIGLAGPQVGQLQRIIV 73
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD +K+ + Q V +NP+I+W S ++ +Y EGCLS+P + +++R ++V L++ G
Sbjct: 74 LDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGCLSIPDQYAEVERPASVKVRWLDLNGN 133
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ EGL A C+QHEIDHL+GK+FI+YL K++ I +K K
Sbjct: 134 EQDREMEGLWATCVQHEIDHLDGKLFIDYLGPMKRQLITRKMEK 177
>gi|421254357|ref|ZP_15709242.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
Anand1_buffalo]
gi|421264312|ref|ZP_15715304.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
P52VAC]
gi|401688392|gb|EJS83997.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
P52VAC]
gi|401692523|gb|EJS86981.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
Anand1_buffalo]
Length = 170
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ YPD RLK IA+P+ E + +++I+ NM ETMY GIGLAA+QV+IH++++
Sbjct: 1 MARLNVLVYPDERLKIIAKPVVEVNDEIREIVDNMFETMYLEEGIGLAATQVNIHQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ V INP+II E I EGCLSLPG + R +++ + AL G+ +
Sbjct: 61 IDVEGTKENQYVLINPEIIDSCGETGI-EEGCLSLPGFRGFVPRKEKVTIKALGRHGEEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ AEGLLAIC+QHEIDHLNG +F +YLS K++R+ +K LK
Sbjct: 120 TLSAEGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLLK 161
>gi|71276449|ref|ZP_00652725.1| Formylmethionine deformylase [Xylella fastidiosa Dixon]
gi|170731000|ref|YP_001776433.1| peptide deformylase [Xylella fastidiosa M12]
gi|238687947|sp|B0U4M4.1|DEF_XYLFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|71162765|gb|EAO12491.1| Formylmethionine deformylase [Xylella fastidiosa Dixon]
gi|71728969|gb|EAO31101.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
gi|167965793|gb|ACA12803.1| Peptide deformylase [Xylella fastidiosa M12]
Length = 170
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 116/172 (67%), Gaps = 10/172 (5%)
Query: 1 MTLLPIIYYPDIRLKK------IAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDI 54
M LLPI+ +PD RL+ +AE ++ + + ++ +M ETMY A GIGLAA+QV++
Sbjct: 1 MALLPILEFPDPRLRTKAVRVGVAEVVSS---SFQTLLDDMFETMYAAPGIGLAATQVNV 57
Query: 55 HKQLLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
H++ +++D+S+ N VFINP+I+ + Q++ EGCLS+PGI + R+ I V L+
Sbjct: 58 HQRFMVVDVSEEKNAPMVFINPEIVTREGD-QVFQEGCLSVPGIHADVTRALSIVVRFLD 116
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
G ++ AEGLLA+C+QHE+DHL+GK+FI+YLS K++ + +K K ++
Sbjct: 117 RHGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRRR 168
>gi|424863827|ref|ZP_18287739.1| peptide deformylase [SAR86 cluster bacterium SAR86A]
gi|400757148|gb|EJP71360.1| peptide deformylase [SAR86 cluster bacterium SAR86A]
Length = 169
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 115/164 (70%), Gaps = 1/164 (0%)
Query: 4 LPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDI 63
L I+ +PD +L+ +A+ IT+FD +L+K+ NM TMY A GIGLAA+QVD H +L+++D+
Sbjct: 5 LKILVFPDPKLRTVAKKITKFDKSLEKLSDNMLHTMYDANGIGLAATQVDEHIRLVVMDL 64
Query: 64 SKNNNQLQVFINPKIIWYSKEKQI-YNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
S++ N+ VF+NP+ + K + + EGCLS+PG + I R I + +++GK EI
Sbjct: 65 SEDRNEPMVFVNPEYKVQKEHKLVEFEEGCLSIPGFNHNIARPDNIELKWQDLKGKEHEI 124
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EG+L+IC+QHEIDHL GK+ ++Y+S K++R+ K+ LK K+
Sbjct: 125 KPEGMLSICIQHEIDHLEGKLMVDYVSALKRDRVRKRLLKEFKR 168
>gi|145300986|ref|YP_001143827.1| peptide deformylase [Aeromonas salmonicida subsp. salmonicida A449]
gi|418362666|ref|ZP_12963292.1| peptide deformylase [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|158514058|sp|A4ST57.1|DEF_AERS4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|142853758|gb|ABO92079.1| polypeptide deformylase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|356686115|gb|EHI50726.1| peptide deformylase [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 170
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 114/166 (68%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ F L+ I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N V INP+I+ + I EGCLS+P + R++ ++V AL+ G+ F
Sbjct: 61 IDVSENREDPLVLINPEILEQAGSTGI-EEGCLSVPDHRALVPRAEWVKVRALDRNGQPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K ++
Sbjct: 120 ELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMARE 165
>gi|451941377|ref|YP_007462014.1| polypeptide deformylase [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451900764|gb|AGF75226.1| polypeptide deformylase [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 176
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 112/160 (70%), Gaps = 2/160 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L ++ PD L++I++P+ D L+++ +M ETMYHA G+GLAA Q+ I ++L+
Sbjct: 1 MLLKSLVTLPDPILREISKPVEHIDSALQQLADDMLETMYHAKGVGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S N++ V INP+I+W S+E+ IY EGCLS+P + +++R KR+ V + EGK
Sbjct: 61 IDVSGNDDAKNPLVIINPEILWLSEERSIYKEGCLSIPEYYAEVERPKRLCVRYQDHEGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIK 158
EI A+ LLA CLQHEIDHLNG +FI+++S K++ +I+
Sbjct: 121 QTEIEADNLLATCLQHEIDHLNGCLFIDHISKLKRDMVIR 160
>gi|414175566|ref|ZP_11429970.1| peptide deformylase [Afipia broomeae ATCC 49717]
gi|410889395|gb|EKS37198.1| peptide deformylase [Afipia broomeae ATCC 49717]
Length = 171
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 110/162 (67%), Gaps = 2/162 (1%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
II PD +L+ I++P+ + ++ + +M +TMY A GIGLAA QV + +L+ +D+SK
Sbjct: 6 IIILPDKQLRLISKPVEKITPEIRALADDMFQTMYDAPGIGLAAIQVAVPLRLITMDLSK 65
Query: 66 NNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEII 123
+ + VFINP+I+ S E +Y EGCLS+P + +++R R+RV +++EG E
Sbjct: 66 KEGEKEPRVFINPEILASSDEMSVYEEGCLSIPEYYEEVERPARVRVRFMDLEGVTREED 125
Query: 124 AEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
AEGL A C+QHEIDHLNG +F++YLS K++R++KKF K K
Sbjct: 126 AEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAK 167
>gi|407772949|ref|ZP_11120251.1| peptide deformylase [Thalassospira profundimaris WP0211]
gi|407284902|gb|EKF10418.1| peptide deformylase [Thalassospira profundimaris WP0211]
Length = 172
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 109/164 (66%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ PD RLKK EP+ E + +K ++ +M ETMY A GIGLAA Q+ + K++++
Sbjct: 1 MALREILIVPDPRLKKECEPVEEVNDEIKTLLNDMLETMYAAPGIGLAAPQIGVMKRVVV 60
Query: 61 LDISKNNNQLQVF--INPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S + ++ + INP+IIW S+E IY EGCLS+P + ++R + + ++ G+
Sbjct: 61 MDVSDDKDKPEPLKLINPEIIWESEETSIYQEGCLSIPEQYADVERPAEVGMRYMDENGE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI A+GLLA C+QHEIDHL+G +F +YLS K+ I+KK K
Sbjct: 121 THEIEADGLLATCIQHEIDHLDGVLFTDYLSALKRNMILKKVQK 164
>gi|218710998|ref|YP_002418619.1| peptide deformylase [Vibrio splendidus LGP32]
gi|218324017|emb|CAV20379.1| Peptide deformylase [Vibrio splendidus LGP32]
Length = 206
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 108/162 (66%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ PD RL+ +A+P+ E ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 37 MSVLQVLTLPDNRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 96
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ V INP+I E I EGCLS+PG + R+ + V AL+ EG F
Sbjct: 97 IDISETRDEPMVLINPEITDKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDREGNEF 155
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ LLAIC+QHE+DHL GK+F++YLS K++RI K K
Sbjct: 156 TFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAK 197
>gi|59713150|ref|YP_205926.1| peptide deformylase [Vibrio fischeri ES114]
gi|197334102|ref|YP_002157326.1| peptide deformylase [Vibrio fischeri MJ11]
gi|75506885|sp|Q5E1Q8.1|DEF_VIBF1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238690282|sp|B5FCW6.1|DEF_VIBFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|59481251|gb|AAW87038.1| peptide deformylase [Vibrio fischeri ES114]
gi|197315592|gb|ACH65039.1| peptide deformylase [Vibrio fischeri MJ11]
Length = 170
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ +A+P+ ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MALLEVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP I S + I EGCLS+PG + RS + V AL+ +G F
Sbjct: 61 IDVSETRDEPMVLINPVITQKSGDDGI-EEGCLSVPGAKGLVPRSAEVSVSALDRDGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKER 155
A+ LLAIC+QHE+DHL+GK+F++YLS K++R
Sbjct: 120 SFDADDLLAICVQHELDHLDGKLFVDYLSPLKRKR 154
>gi|423687272|ref|ZP_17662080.1| peptide deformylase [Vibrio fischeri SR5]
gi|371493531|gb|EHN69133.1| peptide deformylase [Vibrio fischeri SR5]
Length = 170
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ +A+P+ ++K + +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MALLEVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP I S + I EGCLS+PG + RS + V AL+ +G F
Sbjct: 61 IDVSETRDEPMVLINPVITQKSGDDGI-EEGCLSVPGAKGLVPRSAEVSVRALDRDGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKER 155
A+ LLAIC+QHE+DHL+GK+F++YLS K++R
Sbjct: 120 SFDADDLLAICVQHELDHLDGKLFVDYLSPLKRKR 154
>gi|260426170|ref|ZP_05780149.1| peptide deformylase [Citreicella sp. SE45]
gi|260420662|gb|EEX13913.1| peptide deformylase [Citreicella sp. SE45]
Length = 176
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 109/162 (67%), Gaps = 4/162 (2%)
Query: 5 PIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS 64
PI+ +PD RLKK+ +P+ + +L+ + +M ETMY A GIGLAA QV I +L++LD +
Sbjct: 7 PILIHPDPRLKKLCDPVADLSDDLRTLADDMLETMYDAPGIGLAAPQVGILHRLIVLDCA 66
Query: 65 KNNN----QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
K +N + V INP+I+ S E+ +Y EGCLS+P + ++R K + V L+ +GK+
Sbjct: 67 KQDNGETPRPLVMINPRILASSDERSVYEEGCLSIPDQYADVERPKMVEVEWLDRDGKLQ 126
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ +GL A C+QHEIDHL+GK+FI+YL K++ I +K +K
Sbjct: 127 KEEFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVK 168
>gi|126733797|ref|ZP_01749544.1| Peptide deformylase [Roseobacter sp. CCS2]
gi|126716663|gb|EBA13527.1| Peptide deformylase [Roseobacter sp. CCS2]
Length = 173
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 110/165 (66%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RLKK+A P+ + +L+++ +M ETMY A GIGLAA Q+ + ++L+
Sbjct: 1 MALRNILIHPDPRLKKVATPVPSVNDDLRRLADDMLETMYDAPGIGLAAPQIAVMNRMLV 60
Query: 61 LDISKNNN---QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D +K ++ + V INP+++W S+E+ +Y EGCLS+P + +++R + V N++G
Sbjct: 61 MDCAKEDDATPEPMVLINPEVVWTSEEQNVYEEGCLSIPEQYAEVERPTEVEVTWTNLDG 120
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ +GL A C+QHEIDHL+GK+FI+YL K++ I +K K
Sbjct: 121 QAKRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQK 165
>gi|395764939|ref|ZP_10445559.1| peptide deformylase [Bartonella sp. DB5-6]
gi|395413756|gb|EJF80218.1| peptide deformylase [Bartonella sp. DB5-6]
Length = 176
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 115/168 (68%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+L +I PD L+++++P+ D L+K+ +M + MY A G+GLAA Q+ + ++L+
Sbjct: 1 MSLNSLIILPDPILREVSKPVEHVDSTLQKLADDMLDIMYEAQGVGLAAIQIGVPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S ++ Q V INPKI+W S E+ IY EGCLS+P + +++R KR+ V + +GK
Sbjct: 61 IDVSGDDIQKNPLVIINPKILWLSDERNIYKEGCLSIPEYYAEVERPKRLCVRYQDRQGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+ LLA CLQHEIDHLNG +FI+++S K++ +I+KF K K+
Sbjct: 121 QTEIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKFKKRAKE 168
>gi|386398889|ref|ZP_10083667.1| peptide deformylase [Bradyrhizobium sp. WSM1253]
gi|385739515|gb|EIG59711.1| peptide deformylase [Bradyrhizobium sp. WSM1253]
Length = 174
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 116/172 (67%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD +L+ +++PI + ++K+ +M ETMY A GIGLAA Q+ +L+
Sbjct: 1 MALREIIILPDKQLRLVSKPIEKVTPEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60
Query: 61 LDISKNNN------QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K + + +VFINP+II S++ +Y EGCLS+P + +++R ++RV +
Sbjct: 61 MDLAKPDQDGETKPEPRVFINPEIIASSEDLSVYEEGCLSIPEYYEEVERPAKVRVRYTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++GK+ E AEGL A C+QHEIDHLNG +F++YLS K++R++KKF K K+
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEKAAKR 172
>gi|229524948|ref|ZP_04414353.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
gi|229338529|gb|EEO03546.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
Length = 194
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 116/166 (69%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 26 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ + V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 86 IDISETRDLPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 144
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 145 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 189
>gi|407893274|ref|ZP_11152304.1| polypeptide deformylase [Diplorickettsia massiliensis 20B]
Length = 169
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 111/166 (66%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II+ PD RL++ E +T FD L+ +I +M ETMY GIGLAA Q+ + K+L I
Sbjct: 1 MALRTIIHLPDPRLRQPTESVTVFDAELQALIDDMFETMYSVKGIGLAAPQIAVSKKLAI 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + + INP ++ E + EGCLS+PG+++++ R+ +++ A + +G+ +
Sbjct: 61 IDVSDDRSTTLCLINPTLVEKQGEA-LLKEGCLSIPGVYDEVPRALWVKLSAQDRDGQPY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ AEGLLA C+QHEIDHLNG++F++YLS K+E KK K ++
Sbjct: 120 ELEAEGLLAHCIQHEIDHLNGRLFVDYLSPLKRELARKKVSKTKRR 165
>gi|418330758|ref|ZP_12941725.1| peptide deformylase [Vibrio cholerae HC-06A1]
gi|419831373|ref|ZP_14354848.1| peptide deformylase [Vibrio cholerae HC-61A2]
gi|356423392|gb|EHH76844.1| peptide deformylase [Vibrio cholerae HC-06A1]
gi|408652870|gb|EKL24061.1| peptide deformylase [Vibrio cholerae HC-61A2]
Length = 166
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 113/161 (70%), Gaps = 2/161 (1%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH++++++DIS+
Sbjct: 3 VLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVIDISE 62
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
+Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ ++ A+
Sbjct: 63 TRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFDAD 121
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 122 DLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 161
>gi|347528913|ref|YP_004835660.1| peptide deformylase [Sphingobium sp. SYK-6]
gi|345137594|dbj|BAK67203.1| peptide deformylase [Sphingobium sp. SYK-6]
Length = 176
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 111/174 (63%), Gaps = 9/174 (5%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + PII PD RL+ I+ P+ D L+ +I +M ETMY A GIGLAA Q+ + K++L+
Sbjct: 1 MAIRPIIETPDPRLRTISTPVETIDDALQTLIDDMFETMYAAPGIGLAAIQIGVPKRVLV 60
Query: 61 LDISKNNNQLQ---------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVH 111
+D+ + + + VFINP+I+ S E +YNEGCLS+P + ++ R RIR
Sbjct: 61 IDLQEPESDEEGAPPVKNPLVFINPRILEGSAEHSVYNEGCLSVPDQYAEVDRPARIRAS 120
Query: 112 ALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
++ +G++ E EGLLA CLQHE+DHL G +FI++LS K++ ++KK K K
Sbjct: 121 WMDRQGRIHEEELEGLLATCLQHEMDHLEGILFIDHLSRLKRDMLLKKLAKTRK 174
>gi|407782504|ref|ZP_11129716.1| N-formylmethionyl-tRNA deformylase [Oceanibaculum indicum P24]
gi|407205869|gb|EKE75835.1| N-formylmethionyl-tRNA deformylase [Oceanibaculum indicum P24]
Length = 175
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 112/164 (68%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LP++ PD RLKK A P+ D ++K + +M ETMY G+GLAA QV I ++++
Sbjct: 1 MAVLPLVVAPDPRLKKKALPVERVDDTIRKQMDDMVETMYAENGMGLAAPQVGISNRVIV 60
Query: 61 LDISKNNNQLQVF--INPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DI++ + +F NP+IIW S E + Y EGCLS+P + ++KR +++ ++ E +
Sbjct: 61 MDIARKDEDPVIFKMANPEIIWESPEIKSYEEGCLSVPEHYAEVKRPASVKIRFIDYENE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ EI A+G+LA+C+QHEIDHLNG +FI++LS+ K+ I +K LK
Sbjct: 121 IREIEADGVLAVCVQHEIDHLNGVLFIDHLSSLKRGIIARKLLK 164
>gi|365882864|ref|ZP_09422050.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
sp. ORS 375]
gi|365288757|emb|CCD94581.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
sp. ORS 375]
Length = 175
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 118/172 (68%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+L II PD +L+ +++P+ + ++++++ +M +TMY A GIGLAA QV +++
Sbjct: 1 MSLREIIILPDKQLRLVSKPVEKVTPDIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60
Query: 61 LDISKNNN------QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K ++ + +VFINP+II S E +Y EGCLS+P + +++R R+RV +
Sbjct: 61 MDLAKPDSGGETKREPRVFINPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++G + E AEGL A C+QHEIDHLNG +FI+YLS K++R++KKF K K+
Sbjct: 121 LDGVVREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKR 172
>gi|384214925|ref|YP_005606089.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 6]
gi|354953822|dbj|BAL06501.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 6]
Length = 174
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 116/172 (67%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD +L+ +++PI + ++K+ +M ETMY A GIGLAA Q+ +L+
Sbjct: 1 MALREIIILPDKQLRLVSKPIEKVTTEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60
Query: 61 LDISKNNN------QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K + + +VFINP+II S++ +Y EGCLS+P + +++R ++RV +
Sbjct: 61 MDLAKPDPDGETKPEPRVFINPEIIASSEDLSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++GK+ E AEGL A C+QHEIDHLNG +F++YLS K++R++KKF K K+
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFEKAAKR 172
>gi|429205990|ref|ZP_19197258.1| Peptide deformylase [Rhodobacter sp. AKP1]
gi|428190711|gb|EKX59255.1| Peptide deformylase [Rhodobacter sp. AKP1]
Length = 177
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 107/161 (66%), Gaps = 3/161 (1%)
Query: 5 PIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS 64
PI+ +PD RLKKI +P+ + +L+++ +M TMY A GIGLAA QV + ++L++LD +
Sbjct: 4 PILIHPDPRLKKICDPVGQITDDLRRLADDMLATMYDAPGIGLAAPQVGVTRRLIVLDCN 63
Query: 65 KNNNQLQ---VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
K ++ + +NP+++W S++ Y EGCLSLP +F +++R ++V ++G+ E
Sbjct: 64 KESDGARRPVAMVNPEVVWRSEDVSTYEEGCLSLPNVFAEVERPAEVKVRWTGLDGRDEE 123
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GL A C+QHEIDHL+GK+FI+YL K++ I +K K
Sbjct: 124 EQFAGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEK 164
>gi|433771874|ref|YP_007302341.1| peptide deformylase [Mesorhizobium australicum WSM2073]
gi|433663889|gb|AGB42965.1| peptide deformylase [Mesorhizobium australicum WSM2073]
Length = 176
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 112/164 (68%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P+I PD L+++++P+ D ++K+ +M TMY A GIGLAA QV ++L+
Sbjct: 1 MPIKPLIILPDPILRQVSKPVERVDAPVRKLADDMLATMYDAPGIGLAAIQVGEPLRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K + VFINP+I+ + + +Y EGCLS+P + +++R +RV L+ +GK
Sbjct: 61 IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ EI AEGL+A CLQHEIDHLNG +FI+++S K++ ++KKF K
Sbjct: 121 LQEIEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKK 164
>gi|90419800|ref|ZP_01227709.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
gi|90335841|gb|EAS49589.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
Length = 170
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 113/168 (67%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ ++P+ D ++++ +M ETMY A GIGLAA Q+ ++++
Sbjct: 1 MTIKPLIILPDPVLRQTSKPVETVDDQVRRLADDMLETMYDAPGIGLAAIQIGEPLRMMV 60
Query: 61 LDISKNN--NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+SK N ++F+NP+I+ S +Y EGCLS+P + +++R + V L ++GK
Sbjct: 61 IDVSKEEEENAPRIFLNPEILTISDAVSVYEEGCLSIPDYYAEVERPAEVTVRYLGLDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
M E A+G+LA C+QHE+DHLNG +FI+++S K++ ++KKF K ++
Sbjct: 121 MHEETADGILATCVQHELDHLNGVLFIDHISKLKRDMVVKKFTKAARR 168
>gi|325291800|ref|YP_004277664.1| polypeptide deformylase [Agrobacterium sp. H13-3]
gi|325059653|gb|ADY63344.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
H13-3]
Length = 170
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ + PI + D + ++ +M ETMY A GIGLAA QV + +++L+
Sbjct: 1 MTIKPLIILPDPVLRQQSRPIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ + + + VFINP+I+ S + Y EGCLS+P + +++R + V ++ +GK
Sbjct: 61 IDVSREDEEKKPVVFINPEILRVSDDVSAYEEGCLSIPDYYAEVERPASLTVRYVDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K+E +IKKF K +
Sbjct: 121 HQMVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIKKFTKAAR 167
>gi|15837528|ref|NP_298216.1| peptide deformylase [Xylella fastidiosa 9a5c]
gi|28199634|ref|NP_779948.1| peptide deformylase [Xylella fastidiosa Temecula1]
gi|182682379|ref|YP_001830539.1| peptide deformylase [Xylella fastidiosa M23]
gi|386083714|ref|YP_005999996.1| peptide deformylase [Xylella fastidiosa subsp. fastidiosa GB514]
gi|417558656|ref|ZP_12209618.1| N-formylmethionyl-tRNA deformylase Def [Xylella fastidiosa EB92.1]
gi|54036955|sp|P63918.1|DEF_XYLFT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|54040743|sp|P63917.1|DEF_XYLFA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238691097|sp|B2I8S4.1|DEF_XYLF2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|9105847|gb|AAF83736.1|AE003931_13 polypeptide deformylase [Xylella fastidiosa 9a5c]
gi|28057749|gb|AAO29597.1| polypeptide deformylase [Xylella fastidiosa Temecula1]
gi|182632489|gb|ACB93265.1| peptide deformylase [Xylella fastidiosa M23]
gi|307578661|gb|ADN62630.1| peptide deformylase [Xylella fastidiosa subsp. fastidiosa GB514]
gi|338178736|gb|EGO81719.1| N-formylmethionyl-tRNA deformylase Def [Xylella fastidiosa EB92.1]
Length = 170
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 116/172 (67%), Gaps = 10/172 (5%)
Query: 1 MTLLPIIYYPDIRLKK------IAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDI 54
M LLPI+ +PD RL+ +AE ++ + + ++ +M ETMY A GIGLAA+QV++
Sbjct: 1 MALLPILEFPDPRLRTKAVRVGVAEVVSS---SFQTLLDDMFETMYAAPGIGLAATQVNV 57
Query: 55 HKQLLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
H++ +++D+S+ N VFINP+I+ + Q++ EGCLS+PGI + R+ I V L+
Sbjct: 58 HQRFMVIDVSEEKNVPMVFINPEIVTREGD-QVFQEGCLSVPGIHADVTRALSIVVRFLD 116
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
G ++ AEGLLA+C+QHE+DHL+GK+FI+YLS K++ + +K K ++
Sbjct: 117 RHGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRRR 168
>gi|146337885|ref|YP_001202933.1| peptide deformylase [Bradyrhizobium sp. ORS 278]
gi|158514293|sp|A4YLB9.1|DEF_BRASO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146190691|emb|CAL74695.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
sp. ORS 278]
Length = 175
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 117/172 (68%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+L II PD +L+ +++P+ + +++++ +M +TMY A GIGLAA QV +++
Sbjct: 1 MSLREIIILPDRQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60
Query: 61 LDISKNNN------QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K ++ + +VFINP+II S E +Y EGCLS+P + +++R R+RV +
Sbjct: 61 MDLAKPDSGGETKREPRVFINPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++G + E AEGL A C+QHEIDHLNG +FI+YLS K++R++KKF K K+
Sbjct: 121 LDGVVREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKR 172
>gi|395789111|ref|ZP_10468641.1| peptide deformylase [Bartonella taylorii 8TBB]
gi|395431245|gb|EJF97272.1| peptide deformylase [Bartonella taylorii 8TBB]
Length = 176
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 117/169 (69%), Gaps = 4/169 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + +I PD L+++++P+ D L+K+ +M +TMY+A G+GLAA Q+ I ++L+
Sbjct: 1 MPIKSLITLPDPILREVSKPVEHIDSALQKLADDMLDTMYNAQGVGLAAIQIGIPLRMLV 60
Query: 61 LDISKNN---NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D+S+++ N L V INP+I+W S E+ Y EGCLS+P + +++R KR+ V + +G
Sbjct: 61 IDVSRDDISKNPL-VVINPEILWLSDERNTYKEGCLSIPEYYAEVERPKRLCVRYQDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
K EI A+ LLA CLQHEIDHLNG +FI+++S K++ +I+KF K K+
Sbjct: 120 KQTEIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKFKKRAKE 168
>gi|392952183|ref|ZP_10317738.1| peptide deformylase [Hydrocarboniphaga effusa AP103]
gi|391861145|gb|EIT71673.1| peptide deformylase [Hydrocarboniphaga effusa AP103]
Length = 168
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+++PD RL+ A P+ +F +L+K+I +M ETMY A G+GLAA+QV I +++ +
Sbjct: 1 MAVLEILHHPDPRLRIKARPVVDFGPSLQKLIDDMFETMYAAPGVGLAATQVGIDQRIAV 60
Query: 61 LDI-SKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+D ++ QV INP I+ S +KQ EGCLS+P + +K++R ++++ A + G
Sbjct: 61 MDAGAEGKPDPQVLINPVIVEAS-DKQEMEEGCLSVPDVADKVQRYNKLKLKAFDRNGSP 119
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+E+ EGL A +QHEIDHL+GK++I+YLS+ K+ERI+KK K +
Sbjct: 120 YEVEVEGLRAQAIQHEIDHLDGKLYIDYLSSLKRERILKKLRKQAAR 166
>gi|148258522|ref|YP_001243107.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
gi|158513291|sp|A5ESQ7.1|DEF_BRASB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146410695|gb|ABQ39201.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
Length = 175
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 116/172 (67%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+L II PD +L+ +++P+ + +++++ +M +TMY A GIGLAA QV +++
Sbjct: 1 MSLREIIILPDKQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60
Query: 61 LDISKNN------NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K + + +VFINP+II S E IY EGCLS+P + +++R R+RV +
Sbjct: 61 MDLAKPDAGGETKREPRVFINPEIIAKSDELSIYEEGCLSIPEYYEEVERPARVRVRFTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++G + E AEGL A C+QHEIDHLNG +FI+YLS K++R++KKF K K+
Sbjct: 121 LDGVLREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVLKKFTKAAKR 172
>gi|383774860|ref|YP_005453929.1| polypeptide deformylase [Bradyrhizobium sp. S23321]
gi|381362987|dbj|BAL79817.1| polypeptide deformylase [Bradyrhizobium sp. S23321]
Length = 174
Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 114/172 (66%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD +L+ +++PI + ++K+ +M ETMY A GIGLAA Q+ +L+
Sbjct: 1 MALREIIILPDKQLRLVSKPIEKVTAEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60
Query: 61 LDISKNNNQ------LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K + +VFINP++I S+E +Y EGCLS+P + +++R ++RV +
Sbjct: 61 MDLAKRDENGETKPLPRVFINPEVIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++G + E AEGL A C+QHEIDHLNG +F++YLS K++R+IKKF K K+
Sbjct: 121 LDGNVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVIKKFEKAAKR 172
>gi|417858747|ref|ZP_12503804.1| peptide deformylase [Agrobacterium tumefaciens F2]
gi|338824751|gb|EGP58718.1| peptide deformylase [Agrobacterium tumefaciens F2]
Length = 170
Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ + PI + D + ++ +M ETMY A GIGLAA QV + +++L+
Sbjct: 1 MTIKPLIILPDPVLRQQSRPIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ + + + VFINP+I+ S + Y EGCLS+P + +++R + V ++ +GK
Sbjct: 61 IDVSREDEEKKPVVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVRYVDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K++ +IKKF K +
Sbjct: 121 QQTVDADGLLATCLQHEIDHLNGILFIDHISRLKRDMVIKKFTKAAR 167
>gi|313673898|ref|YP_004052009.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
gi|312940654|gb|ADR19846.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
Length = 167
Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 109/157 (69%), Gaps = 3/157 (1%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILD 62
LL I+ YPD RL+ +P+ +FD LKKI+ +M ETMY+A G+GLAA QV I K+L I+D
Sbjct: 2 LLEILKYPDPRLRVKCKPVDKFDEELKKIVNDMAETMYNAPGVGLAAPQVGIDKRLFIID 61
Query: 63 ISKNNNQLQVFINPKIIWYSKEKQIYN-EGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
ISK N L+VFINP I+ KE +I + EGCLS+PG + + R++ + A +I G F
Sbjct: 62 ISKEKNDLKVFINPTIL--KKEGEICDEEGCLSVPGEYANVTRAEVVEAVAQDINGNEFI 119
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIK 158
I A+GL+A +QHE+DHLNG +F++ L FK+E + K
Sbjct: 120 IKADGLMARAIQHELDHLNGTLFLDRLPAFKRESVKK 156
>gi|71731305|gb|EAO33369.1| Formylmethionine deformylase [Xylella fastidiosa subsp. sandyi
Ann-1]
Length = 170
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 116/172 (67%), Gaps = 10/172 (5%)
Query: 1 MTLLPIIYYPDIRLKK------IAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDI 54
M LLPI+ +PD RL+ +AE ++ + + ++ +M ETMY A GIGLAA+QV++
Sbjct: 1 MALLPILEFPDPRLRTKAVRVGVAEVVSS---SFQTLLDDMFETMYAAPGIGLAATQVNV 57
Query: 55 HKQLLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
H++ +++D+S+ N VFINP+I+ + Q++ EGCLS+PGI + R+ I V L+
Sbjct: 58 HQRFMVIDVSEEKNVPMVFINPEIVTKEGD-QVFQEGCLSVPGIHADVTRALSIVVRFLD 116
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
G ++ AEGLLA+C+QHE+DHL+GK+FI+YLS K++ + +K K ++
Sbjct: 117 RHGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRRR 168
>gi|367472171|ref|ZP_09471761.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
sp. ORS 285]
gi|365275521|emb|CCD84229.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
sp. ORS 285]
Length = 175
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 116/172 (67%), Gaps = 6/172 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+L II PD +L+ +++P+ + +++++ +M +TMY A GIGLAA QV +++
Sbjct: 1 MSLREIIILPDKQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPVRVIT 60
Query: 61 LDISKNN------NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D++K + + +VFINP+II S E +Y EGCLS+P + +++R R+RV +
Sbjct: 61 MDLAKPDANGEGKREPRVFINPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
++G + E AEGL A C+QHEIDHLNG +FI+YLS K++R++KKF K K+
Sbjct: 121 LDGVVREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKR 172
>gi|78484538|ref|YP_390463.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
gi|123755296|sp|Q31J84.1|DEF_THICR RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78362824|gb|ABB40789.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
Length = 169
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ YPD L+++ +P+ E L K+I M TMY A GIGLAA QV + ++L++
Sbjct: 1 MDKLDIVLYPDEGLREVCKPVPEMTDELDKLIDEMFYTMYDAPGIGLAAPQVAVQQRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ +NP+II + K + EGCLS+PGI+ K+ R I V ++ +GK
Sbjct: 61 VDISETKDEPIALLNPEII-KTAGKITWEEGCLSIPGIYAKVDRPSDILVRGMDRDGKTI 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A LLA+C+QHEIDHLNGK+FI++LS K+ R I+KF K + +
Sbjct: 120 EFEANELLAVCIQHEIDHLNGKLFIDHLSGLKRTRAIQKFKKEMAE 165
>gi|167855659|ref|ZP_02478417.1| peptide deformylase [Haemophilus parasuis 29755]
gi|219871701|ref|YP_002476076.1| peptide deformylase [Haemophilus parasuis SH0165]
gi|254767590|sp|B8F726.1|DEF_HAEPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|167853231|gb|EDS24487.1| peptide deformylase [Haemophilus parasuis 29755]
gi|219691905|gb|ACL33128.1| N-formylmethionyl-tRNA deformylase [Haemophilus parasuis SH0165]
Length = 170
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 107/162 (66%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ YPD L K+ +P+ D L I NM +TMY GIGLAA QV++ K+++
Sbjct: 1 MAVLDVLIYPDENLAKVCQPVETVDAELNTFIDNMFDTMYEHEGIGLAAPQVNVLKRVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ S E I EGCLS+PG + R +++ V ALN EG+ F
Sbjct: 61 IDIEGDKTNQIVLINPEILESSGETGI-EEGCLSIPGCRALVPRKEKLTVKALNREGQTF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++++S K++RI +K LK
Sbjct: 120 TLEADGLLAICIQHEIDHLNGVLFVDHISQLKRQRIKEKMLK 161
>gi|77464452|ref|YP_353956.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
gi|126463292|ref|YP_001044406.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
gi|221640344|ref|YP_002526606.1| peptide deformylase [Rhodobacter sphaeroides KD131]
gi|332559341|ref|ZP_08413663.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
gi|77388870|gb|ABA80055.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
gi|126104956|gb|ABN77634.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
gi|221161125|gb|ACM02105.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
gi|332277053|gb|EGJ22368.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
Length = 177
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 106/161 (65%), Gaps = 3/161 (1%)
Query: 5 PIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS 64
PI+ +PD RLKKI +P+ + +L+++ +M TMY A GIGLAA QV + ++L++LD +
Sbjct: 4 PILIHPDPRLKKICDPVGQITDDLRRLADDMLATMYDAPGIGLAAPQVGVVRRLIVLDCN 63
Query: 65 KNNNQLQ---VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
K ++ + +NP+++W S++ Y EGCLSLP +F ++R ++V ++G+ E
Sbjct: 64 KESDGARRPVAMVNPEVVWRSEDVSTYEEGCLSLPNVFADVERPAEVKVRWTGLDGREEE 123
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GL A C+QHEIDHL+GK+FI+YL K++ I +K K
Sbjct: 124 EQFAGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEK 164
>gi|209965583|ref|YP_002298498.1| peptide deformylase [Rhodospirillum centenum SW]
gi|209959049|gb|ACI99685.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
Length = 173
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 110/165 (66%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL I+ PD RL++ AEP+ D + +++ +M ETMY A GIGLAA QV + +++++
Sbjct: 1 MSLLNILIVPDARLRQTAEPVANVDGRVARLMDDMLETMYKAPGIGLAAPQVGVLERVIV 60
Query: 61 LDISKNNNQLQVFI---NPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+DI++ + I NP+II S E EGCLS+P I+ + R +++RV ++ +G
Sbjct: 61 MDIAERKTEAPTPILMANPEIIARSDELATAQEGCLSIPDIYADVTRPRQVRVRYVDRDG 120
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
++ E+ A+GL A C+QHEIDHLNG +F++YLS K+ ++++ K
Sbjct: 121 EVRELDADGLTATCVQHEIDHLNGVLFVDYLSALKRSMLLRRLQK 165
>gi|384227911|ref|YP_005619656.1| peptide deformylase [Buchnera aphidicola str. Ak (Acyrthosiphon
kondoi)]
gi|345538851|gb|AEO08828.1| peptide deformylase [Buchnera aphidicola str. Ak (Acyrthosiphon
kondoi)]
Length = 171
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 107/155 (69%), Gaps = 3/155 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL I+YYPD RL+ IA+P+ E + +KKI+ NM +TMY GIGLAA+QV+I Q+++
Sbjct: 1 MSLLKILYYPDTRLRLIAKPVNEVNKKIKKIVNNMIDTMYQEEGIGLAATQVNIQLQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIY-NEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
++ + V INPKII KE I EGCLS+P I R I+V A+NI G+
Sbjct: 61 INTMEEEKNNLVLINPKII--KKEGNISIEEGCLSIPEYRASIPRYNYIKVQAINIYGEK 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKE 154
EI AE +L+IC+QHEIDHL GK+FI+YLS FK+E
Sbjct: 119 IEIEAESILSICIQHEIDHLQGKLFIDYLSKFKRE 153
>gi|340028006|ref|ZP_08664069.1| peptide deformylase [Paracoccus sp. TRP]
Length = 173
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 101/165 (61%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MTL II +PD RLKKI EP+ ++ + +M TMY A G+GLAA QV + +L +
Sbjct: 1 MTLRSIILHPDPRLKKICEPVARITPEIETLAADMLATMYDAPGVGLAAPQVGVLSRLYV 60
Query: 61 LDISKNNNQLQ---VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D K+ + V +NP+I W S E Y EGCLS+P + + R +++V L ++G
Sbjct: 61 MDCEKDPEAPRNPVVMVNPEITWRSDELNTYEEGCLSIPDQYADVTRPAQVKVRWLGLDG 120
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
K E EGL A C QHEIDHL+GK+FI+YL K++ I +K +K
Sbjct: 121 KTHERDFEGLWATCAQHEIDHLDGKLFIDYLGPIKRQMITRKMVK 165
>gi|406943139|gb|EKD75206.1| peptide deformylase [uncultured bacterium]
Length = 171
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 110/162 (67%), Gaps = 2/162 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
+ +LPI+ YP RLK +A + E II +M ETMY + GIGLAA+Q DIH+Q+++
Sbjct: 6 VAMLPILQYPHSRLKTVAA-LHEISAQTHDIINSMFETMYQSNGIGLAATQCDIHQQIIV 64
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ K +++ INPKII S E Q EGCLS PG+++ +KR+ ++V A++ + F
Sbjct: 65 IDLQKPDSKPLHLINPKIIELSGE-QDSEEGCLSFPGVYDMVKRAMHVKVKAIDKDNNPF 123
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A GLLA +QHEIDHLNG +FIE LS KK+R I+K+ K
Sbjct: 124 ELEATGLLAAAIQHEIDHLNGALFIERLSILKKQRAIEKYNK 165
>gi|418464033|ref|ZP_13034975.1| peptide deformylase [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359757374|gb|EHK91528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 170
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 108/161 (67%), Gaps = 1/161 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YP+ LK + +P+ E + N +KII NM +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPEEHLKVVCDPVVEVNDNTRKIIDNMFDTMYQEGGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ E I EGCLS+PG + R +++ V AL+ GK F
Sbjct: 61 IDIEGDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFL 161
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +
Sbjct: 120 TLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIREKLI 160
>gi|251793801|ref|YP_003008533.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
gi|422337241|ref|ZP_16418213.1| peptide deformylase [Aggregatibacter aphrophilus F0387]
gi|247535200|gb|ACS98446.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
gi|353345793|gb|EHB90084.1| peptide deformylase [Aggregatibacter aphrophilus F0387]
Length = 170
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YP+ LK I +P+TE + + +KII +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPEDHLKVICDPVTEVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ E I EGCLS+PG + R +++ V AL+ +GK F
Sbjct: 61 IDIEGDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+ LLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLKADRLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIK 161
>gi|255261213|ref|ZP_05340555.1| peptide deformylase [Thalassiobium sp. R2A62]
gi|255103548|gb|EET46222.1| peptide deformylase [Thalassiobium sp. R2A62]
Length = 173
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 105/165 (63%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ PI+ +PD RLKK A+ +TEFD L + +M +TMY A GIGLAA Q+ + ++ +
Sbjct: 1 MSIRPILIHPDPRLKKRADEVTEFDDALCVLGDDMLDTMYDAPGIGLAAPQIGVMSRVFV 60
Query: 61 LDISKNNNQ---LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D K + V +NP+I W S E Y+EGCLS+P + ++ R ++V ++EG
Sbjct: 61 MDCVKEEGEEPKPMVLVNPEITWTSDEMNTYDEGCLSIPEQYAEVDRPAEVKVTWQDVEG 120
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+E +GL A C+QHEIDHL+GK+FI+YL K++ I +K K
Sbjct: 121 TQYEAQFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQK 165
>gi|265985144|ref|ZP_06097879.1| peptide deformylase [Brucella sp. 83/13]
gi|306838492|ref|ZP_07471332.1| peptide deformylase [Brucella sp. NF 2653]
gi|264663736|gb|EEZ33997.1| peptide deformylase [Brucella sp. 83/13]
gi|306406424|gb|EFM62663.1| peptide deformylase [Brucella sp. NF 2653]
Length = 175
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 109/164 (66%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P+I PD L++++ P+ FD L+K +M +TMY A GIGLAA QV ++L+
Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K +FINP I+ S E+ Y EGCLS+P + +++R ++V+ + +GK
Sbjct: 61 IDLAKEGEPKAPHIFINPTIVQSSDERSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GL+A CLQHEIDHLNG +FI+++S K++ +IKKF K
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKK 164
>gi|89052957|ref|YP_508408.1| peptide deformylase [Jannaschia sp. CCS1]
gi|88862506|gb|ABD53383.1| peptide deformylase [Jannaschia sp. CCS1]
Length = 174
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 105/163 (64%), Gaps = 5/163 (3%)
Query: 4 LPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDI 63
LPI+ +PD RLKK+A P+ + L+ + NM TMY A GIGLAA QV + ++L++LD
Sbjct: 3 LPILIHPDPRLKKVAAPVPDVTDELRALADNMLSTMYDAPGIGLAAPQVGVGQRLIVLDC 62
Query: 64 SKNNN----QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
K ++ L +F NP++I S E Y+EGCLS+P I+ + R + + V +++ G
Sbjct: 63 EKGDDVTPRPLAMF-NPEVIASSDEMNTYDEGCLSIPDIYADVTRPEAVTVRWMDVNGAE 121
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E +GL A C+QHEIDHL GK+FI+YLS K++ I +K +K
Sbjct: 122 QEETFDGLWATCVQHEIDHLEGKLFIDYLSGLKRQLITRKMVK 164
>gi|261866825|ref|YP_003254747.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|365966643|ref|YP_004948205.1| peptide deformylase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|387121463|ref|YP_006287346.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
gi|415756702|ref|ZP_11481142.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-3]
gi|416035791|ref|ZP_11573561.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
a str. H5P1]
gi|416049154|ref|ZP_11576473.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
d str. I63B]
gi|261412157|gb|ACX81528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|347991970|gb|EGY33408.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
d str. I63B]
gi|347997199|gb|EGY38223.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
a str. H5P1]
gi|348655724|gb|EGY71164.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-3]
gi|365745556|gb|AEW76461.1| peptide deformylase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|385875955|gb|AFI87514.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 170
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 108/161 (67%), Gaps = 1/161 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YP+ LK + +P+ E + N +KII NM +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPEEHLKVVCDPVVEVNDNTRKIIDNMFDTMYQEGGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ E I EGCLS+PG + R +++ V AL+ GK F
Sbjct: 61 IDIEGDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFL 161
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +
Sbjct: 120 TLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLI 160
>gi|330447316|ref|ZP_08310966.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328491507|dbj|GAA05463.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 169
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 111/166 (66%), Gaps = 2/166 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ ++ II +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S+ +Q V INP+I E I EGCLS+PG + R+ + V AL+ G
Sbjct: 61 IDTSETRDQPMVLINPEITEKRGEDGI-EEGCLSVPGARALVPRAAEVSVTALDRNGDTI 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLAIC+QHE+DHL GK+F++YLS K++R IK+ L+ IK+
Sbjct: 120 CFDADELLAICIQHELDHLAGKLFVDYLSPLKRQR-IKQKLEKIKR 164
>gi|359788025|ref|ZP_09291009.1| peptide deformylase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359256230|gb|EHK59102.1| peptide deformylase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 176
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 113/164 (68%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P+I PD L+++++ + + D L K+ +M ETMY A GIGLAA Q+ ++L+
Sbjct: 1 MSIKPLIILPDPVLRQVSKLVGQVDAPLLKLADDMLETMYDAPGIGLAAIQIGEPLRMLV 60
Query: 61 LDISKNNNQL--QVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K Q+FINP+I+ + + +Y EGCLS+P + +++R +RV L+ +GK
Sbjct: 61 IDLAKEGEPPAPQLFINPEIVETGEGRAVYEEGCLSIPDYYAEVERPATVRVKYLDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ EI AEGLLA CLQHEIDHLNG +FI+++S K++ ++KKF K
Sbjct: 121 LQEIDAEGLLATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKK 164
>gi|416054515|ref|ZP_11579207.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
e str. SCC393]
gi|429733356|ref|ZP_19267596.1| peptide deformylase [Aggregatibacter actinomycetemcomitans Y4]
gi|348003501|gb|EGY44094.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
e str. SCC393]
gi|429154958|gb|EKX97663.1| peptide deformylase [Aggregatibacter actinomycetemcomitans Y4]
Length = 181
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 108/161 (67%), Gaps = 1/161 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YP+ LK + +P+ E + N +KII NM +TMY GIGLAA QVDI ++++
Sbjct: 12 MTALNVLIYPEEHLKVVCDPVVEVNDNTRKIIDNMFDTMYQEGGIGLAAPQVDILQRIIT 71
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ E I EGCLS+PG + R +++ V AL+ GK F
Sbjct: 72 IDIEGDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEF 130
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFL 161
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +
Sbjct: 131 TLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLI 171
>gi|415770729|ref|ZP_11484998.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416075605|ref|ZP_11585096.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC1398]
gi|416106943|ref|ZP_11590135.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. SCC2302]
gi|444337067|ref|ZP_21151099.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC4092]
gi|444347192|ref|ZP_21155137.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. AAS4A]
gi|444348294|ref|ZP_21155990.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. S23A]
gi|348005840|gb|EGY46309.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. SCC2302]
gi|348006090|gb|EGY46554.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC1398]
gi|348656635|gb|EGY74244.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|443540760|gb|ELT51287.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. AAS4A]
gi|443547348|gb|ELT56862.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. S23A]
gi|443547679|gb|ELT57131.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC4092]
Length = 181
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 108/161 (67%), Gaps = 1/161 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YP+ LK + +P+ E + N +KII NM +TMY GIGLAA QVDI ++++
Sbjct: 12 MTALNVLIYPEEHLKVVCDPVVEVNDNTRKIIDNMFDTMYQEGGIGLAAPQVDILQRIIT 71
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ E I EGCLS+PG + R +++ V AL+ GK F
Sbjct: 72 IDIEGDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEF 130
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFL 161
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +
Sbjct: 131 TLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLI 171
>gi|384261730|ref|YP_005416916.1| Peptide deformylase [Rhodospirillum photometricum DSM 122]
gi|378402830|emb|CCG07946.1| Peptide deformylase [Rhodospirillum photometricum DSM 122]
Length = 183
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 109/168 (64%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ PD RLK+ A P+ D + +++ +M ETMY A GIGLAA QV + K++++
Sbjct: 1 MALLPILTAPDPRLKRKALPVERVDAAVVRLMNDMVETMYAAPGIGLAAPQVGVLKRVIV 60
Query: 61 LDISKNNNQLQV--FINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D ++ + NP+I+W S+E + Y EGCLS+P ++ + R +++V L+ G
Sbjct: 61 VDPAREGEAPRPMRLANPEILWASEETKPYEEGCLSVPEQYDTVVRPAQVKVAYLDETGT 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA+ LQHEIDHLNG +F+++LS K+ ++++ K +
Sbjct: 121 AREIEADGLLAVVLQHEIDHLNGTLFVDHLSALKRGMLLRRAKKATRS 168
>gi|146276205|ref|YP_001166364.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
gi|145554446|gb|ABP69059.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
Length = 177
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 104/160 (65%), Gaps = 3/160 (1%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+ +PD RLKKI +P+ E +L+++ +M TMY A GIGLAA QV + ++L+++D +K
Sbjct: 5 ILIHPDPRLKKICDPVAEITDDLRRLADDMLATMYDAPGIGLAAPQVGVMRRLVVMDCNK 64
Query: 66 NNNQLQ---VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+ INP+++W S++ Y EGCLSLP +F +++R ++V I+G+ E
Sbjct: 65 QPEAPRRPIAMINPQVVWASEDLSTYEEGCLSLPNVFAEVERPAEVKVRWTGIDGREEEE 124
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GL A C+QHEIDHL+GK+FI+YL K++ I +K K
Sbjct: 125 QFSGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEK 164
>gi|357974112|ref|ZP_09138083.1| peptide deformylase [Sphingomonas sp. KC8]
Length = 177
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 110/169 (65%), Gaps = 7/169 (4%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ PD RL+ +++P+ D +L+ +I +M ETMY A GIGLAA QV + ++L+
Sbjct: 1 MAILPILEAPDPRLRTLSKPVDAVDDDLRALIADMFETMYDAPGIGLAAIQVGVPNRVLV 60
Query: 61 LDISKNNNQ-------LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHAL 113
+D+ ++ + +VFINP++ S+E +Y EGCLS+P F ++R I L
Sbjct: 61 IDLQEDEDAEGKPIRNPRVFINPELFDPSEEHSVYKEGCLSVPDQFADVERPTTIHARWL 120
Query: 114 NIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ +GK E + +GLLA CLQHE+DHL G +FI++LS K++ ++KK K
Sbjct: 121 DADGKKHEALLDGLLATCLQHEMDHLEGILFIDHLSRMKRDMLMKKLDK 169
>gi|226327658|ref|ZP_03803176.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198]
gi|225204184|gb|EEG86538.1| peptide deformylase [Proteus penneri ATCC 35198]
Length = 172
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 108/159 (67%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LP++ +PD RL+++A P+ + D ++ +I +M ETMY GIGLAA QV++ K++++
Sbjct: 1 MAVLPLLRFPDERLRRVAVPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q INP+II E +GCLS+P F +R + ++V AL+ G
Sbjct: 61 IDVSENRDQPIALINPEIISTEDEVMDMMDGCLSIPDSFAPTERYRFLKVRALDRNGDEI 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKK 159
E+ A L A C+QHE+DHL+GK+FI++LS K++RI KK
Sbjct: 121 ELEASDLFAGCIQHELDHLDGKLFIDHLSPLKRQRIEKK 159
>gi|384228465|ref|YP_005620200.1| peptide deformylase [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
gi|345539398|gb|AEO08265.1| peptide deformylase [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
Length = 173
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 110/157 (70%), Gaps = 3/157 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+ L I+YYPD RL+ IA+P+TE + N KKII NM +TM+ GIGLAA+QV+I Q+++
Sbjct: 1 MSCLQILYYPDTRLRLIAKPVTEINKNTKKIINNMIDTMHEKEGIGLAATQVNIQLQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIY-NEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
++I + + V INPKII KE I EGCLS+P I R IRV ++N G+
Sbjct: 61 INIMQKKDTNLVLINPKII--QKEGHISIQEGCLSIPEYRASIPRFNYIRVKSINQYGEK 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
EI A+ ++++C+QHEIDHL GK+FI+YLS FKK+RI
Sbjct: 119 KEIEAKSIMSVCIQHEIDHLQGKLFIDYLSKFKKDRI 155
>gi|390451060|ref|ZP_10236642.1| peptide deformylase [Nitratireductor aquibiodomus RA22]
gi|389661517|gb|EIM73126.1| peptide deformylase [Nitratireductor aquibiodomus RA22]
Length = 176
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 111/164 (67%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P++ PD L++ ++P+ FD L+ +M TMY A GIGLAA QV ++L+
Sbjct: 1 MTIKPLVLLPDPILRETSKPVERFDDQLRTFADDMLATMYDAPGIGLAAIQVGEPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S+ + + V INP+I+ + ++ ++ EGCLS+P + +++R + V+ L+++GK
Sbjct: 61 IDVSEKDEEPAPMVVINPQIVASTDQRNVHEEGCLSIPDYYAEVERPAGVTVNYLDLDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLA CLQHEIDHLNG +FI+YLS K++ +++KF K
Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFRK 164
>gi|225698067|pdb|3FWX|A Chain A, The Crystal Structure Of The Peptide Deformylase From
Vibrio Cholerae O1 Biovar El Tor Str. N16961
gi|225698068|pdb|3FWX|B Chain B, The Crystal Structure Of The Peptide Deformylase From
Vibrio Cholerae O1 Biovar El Tor Str. N16961
Length = 169
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 114/165 (69%), Gaps = 2/165 (1%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
++L ++ +PD RL+ +A+P+ + +++I+ + ET Y GIGLAA+QVDIH++++++
Sbjct: 2 SVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDXLETXYAEEGIGLAATQVDIHQRIVVI 61
Query: 62 DISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ ++
Sbjct: 62 DISETRDQPXVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEYQ 120
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+ LLAIC+QHE+DHL GK+F++YLS K+ R IK+ L+ IK+
Sbjct: 121 FDADDLLAICVQHELDHLAGKLFVDYLSPLKRNR-IKEKLEKIKR 164
>gi|153008675|ref|YP_001369890.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
gi|404318473|ref|ZP_10966406.1| peptide deformylase [Ochrobactrum anthropi CTS-325]
gi|151560563|gb|ABS14061.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
Length = 175
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 111/164 (67%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P++ PD L+++++P+ FD L+K +M +TMY A GIGLAA QV ++L+
Sbjct: 1 MSVKPLVILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K + VFINP+I+ + E Y EGCLS+P + +++R I+V+ + +GK
Sbjct: 61 IDLAKEDEPKAPHVFINPEIVGVTDEVSTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
I A+GL+A CLQHEIDHLNG +FI+++S K++ +IKKF K
Sbjct: 121 QHLIEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKK 164
>gi|154250717|ref|YP_001411541.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
gi|154154667|gb|ABS61884.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
Length = 173
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 106/155 (68%), Gaps = 2/155 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + II PD RLK++++P+ D +L+ ++ +M ETMY A GIGLAA Q+ + KQ+++
Sbjct: 1 MAIREIITAPDPRLKEVSKPVERVDADLRALMDDMLETMYAAPGIGLAAIQIGVPKQVIV 60
Query: 61 LDISKNNNQLQV--FINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+++ + Q FINP+I+W S++ +Y EGCLS+P + ++R R RV L+ +G+
Sbjct: 61 MDLAREGEEPQPRYFINPEILWTSEDVAVYEEGCLSVPEFYEDVERPARCRVRYLDYQGE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKK 153
+ E + LLA CLQHE+DHL G +FI++LS K+
Sbjct: 121 IREEECDDLLATCLQHEMDHLKGILFIDHLSRTKR 155
>gi|261217620|ref|ZP_05931901.1| peptide deformylase [Brucella ceti M13/05/1]
gi|261320497|ref|ZP_05959694.1| peptide deformylase [Brucella ceti M644/93/1]
gi|260922709|gb|EEX89277.1| peptide deformylase [Brucella ceti M13/05/1]
gi|261293187|gb|EEX96683.1| peptide deformylase [Brucella ceti M644/93/1]
Length = 175
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 111/164 (67%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P+I PD L+++++P+ FD L+K +M +TMY A+GIGLAA QV ++L+
Sbjct: 1 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDALGIGLAAIQVGEPIRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K +F+NP I+ S ++ Y EGCLS+P + +++R ++V+ + +GK
Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GL+A CLQHEIDHLNG +FI+++S K++ +IKKF K
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKK 164
>gi|254436643|ref|ZP_05050137.1| peptide deformylase [Octadecabacter antarcticus 307]
gi|198252089|gb|EDY76403.1| peptide deformylase [Octadecabacter antarcticus 307]
Length = 178
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 109/165 (66%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MTL I+ +PD RLK +A+P+ D L + +M ETMY+A GIGLAA Q+ I +++L+
Sbjct: 4 MTLRSILLHPDPRLKSVADPVATVDKTLHALADDMLETMYNAPGIGLAAPQLGIMQRMLV 63
Query: 61 LDISKNN---NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D K++ Q V INP++I+ S + IY+EGCLS+P + +++R ++V +N++G
Sbjct: 64 MDCIKDDMETPQPMVLINPRVIFASSDTNIYDEGCLSIPDQYAEVERPAVVKVEWMNLDG 123
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
K + L A C+QHEIDHLNGK+FI+YL +++ I +K K
Sbjct: 124 KTQQEEFSDLWATCVQHEIDHLNGKLFIDYLKPLRRQMITRKMQK 168
>gi|33519686|ref|NP_878518.1| peptide deformylase [Candidatus Blochmannia floridanus]
gi|39930852|sp|Q7VQC0.1|DEF_BLOFL RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|33517349|emb|CAD83734.1| polypeptide deformylase [Candidatus Blochmannia floridanus]
Length = 175
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 111/162 (68%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++YYPD RL+KIA ++ + KKII +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSILQMLYYPDQRLRKIARSVSIISHDTKKIISDMFETMYFQQGIGLAATQVDIHQKIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++ N + VFINP II EGCLS+P I + RS+ I V +L+ G F
Sbjct: 61 IDLNNNIQKRLVFINPCIIKKIGTITHIIEGCLSIPKIRASVPRSQNIIVQSLDENGNNF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A LL++C+QHEIDHL GK+FI+YLS FK +RI KK K
Sbjct: 121 EMEATDLLSVCIQHEIDHLLGKLFIDYLSPFKIQRIHKKINK 162
>gi|239832661|ref|ZP_04680990.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
gi|444311604|ref|ZP_21147209.1| peptide deformylase [Ochrobactrum intermedium M86]
gi|239824928|gb|EEQ96496.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
gi|443485034|gb|ELT47831.1| peptide deformylase [Ochrobactrum intermedium M86]
Length = 175
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 110/164 (67%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P++ PD L+++++P+ FD L+K +M +TMY A GIGLAA QV ++L+
Sbjct: 1 MSVKPLLILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K VFINP+I+ + E Y EGCLS+P + +++R I+V+ + +GK
Sbjct: 61 IDLAKEGEPKAPHVFINPEIVGVTDEASTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GL+A CLQHEIDHLNG +FI+++S K++ +IKKF K
Sbjct: 121 PHAMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKK 164
>gi|332185304|ref|ZP_08387053.1| peptide deformylase [Sphingomonas sp. S17]
gi|332015028|gb|EGI57084.1| peptide deformylase [Sphingomonas sp. S17]
Length = 173
Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 115/169 (68%), Gaps = 7/169 (4%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ PD RL+ +++P+ D ++++++ +M ETMY A GIGLAA QV + K++L+
Sbjct: 1 MAILPIVEVPDPRLRLVSKPVEAVDDSVRQLVTDMIETMYDAHGIGLAAIQVGVDKRVLV 60
Query: 61 LDISKNNNQ-------LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHAL 113
+D+ + ++ + +INP+I+ S+E YNEGCLS+P + ++KR R +V L
Sbjct: 61 IDLQEEEDEEGKPVKNPKAYINPEILSVSEELSTYNEGCLSIPEQYAEVKRPARCQVKWL 120
Query: 114 NIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ +G+ E +GLLA C+QHE+DHLNG +FI+++S K++ +++K K
Sbjct: 121 DEKGEAHEAEFDGLLATCMQHEMDHLNGVLFIDHVSRLKRDMLMRKLSK 169
>gi|197286654|ref|YP_002152526.1| peptide deformylase [Proteus mirabilis HI4320]
gi|227355155|ref|ZP_03839566.1| peptide deformylase [Proteus mirabilis ATCC 29906]
gi|425069609|ref|ZP_18472724.1| peptide deformylase [Proteus mirabilis WGLW6]
gi|425071067|ref|ZP_18474173.1| peptide deformylase [Proteus mirabilis WGLW4]
gi|194684141|emb|CAR45570.1| peptide deformylase [Proteus mirabilis HI4320]
gi|227164942|gb|EEI49789.1| peptide deformylase [Proteus mirabilis ATCC 29906]
gi|404597035|gb|EKA97542.1| peptide deformylase [Proteus mirabilis WGLW6]
gi|404599892|gb|EKB00345.1| peptide deformylase [Proteus mirabilis WGLW4]
Length = 172
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 108/159 (67%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++++PD RL+K+A P+ + D ++ +I +M ETMY GIGLAA QV++ K++++
Sbjct: 1 MAVLTLLHFPDERLRKVATPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q INP+II E +GCLS+P F +R + ++V AL+ G
Sbjct: 61 IDVSENRDQPIALINPEIISTEDEIMDMMDGCLSIPDSFAPTQRFRYLKVKALDRNGDEI 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKK 159
E+ A L A C+QHE+DHLNGK+FI++LS K++RI KK
Sbjct: 121 ELEAADLFAGCIQHELDHLNGKLFIDHLSPLKRQRIEKK 159
>gi|85713819|ref|ZP_01044809.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
gi|85699723|gb|EAQ37590.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
Length = 175
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 113/171 (66%), Gaps = 6/171 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + II PD +L+ ++ PI + ++K+ +M ETMY A GIGLA Q+ +++
Sbjct: 1 MAIREIIILPDKQLRLVSRPIEKVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60
Query: 61 LDISKN------NNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D+++ N + ++FINP+I+ S+E +Y EGCLS+P + +++R R+R+ +
Sbjct: 61 MDLARRDEDGELNPRPRIFINPEILSASEELSVYEEGCLSIPEYYEEVERPARVRIRFTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
++GK+ E AEGL A C+QHEIDHLNG +F++YLS K++R++KKF K K
Sbjct: 121 LDGKLHEEDAEGLFATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAK 171
>gi|395767509|ref|ZP_10448042.1| peptide deformylase [Bartonella doshiae NCTC 12862]
gi|395413872|gb|EJF80325.1| peptide deformylase [Bartonella doshiae NCTC 12862]
Length = 177
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 109/160 (68%), Gaps = 2/160 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P++ P L++I++P+ D ++++ +M +TMY A GIGLAA Q+ I ++L+
Sbjct: 1 MPIRPLVTLPAPILREISKPVEHIDPTIQRLADDMLDTMYDARGIGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S N+ V INP+I+W S E+ +Y EGCLS+P + +++R KR+ V N EGK
Sbjct: 61 IDVSGNDTTKDPLVIINPEILWLSDERNLYKEGCLSIPEYYAEVERPKRLCVRYQNREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIK 158
EI A+ LLA CLQHEIDHLNG +FI+++S K++ +I+
Sbjct: 121 QIEIEADDLLATCLQHEIDHLNGLLFIDHISKLKRDMVIR 160
>gi|23016537|ref|ZP_00056292.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
magnetotacticum MS-1]
Length = 170
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 109/168 (64%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ PD LK ++P+ D ++ ++ +M ETMYHA GIGLAA Q+ + +++++
Sbjct: 1 MAVLPILTAPDPVLKSKSKPVAAVDDRIRALLADMLETMYHAPGIGLAAPQIGVLERVIV 60
Query: 61 LDISKNNNQLQV--FINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DI + +NP+IIW S E Y EGCLS+P ++ + R ++V L+ G
Sbjct: 61 MDIGRKEEDRAPIRMVNPEIIWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E++AEGLLA +QHE+DHL+G +FI++LS+ K+ I++K LK K+
Sbjct: 121 KQELLAEGLLATVVQHEMDHLDGVLFIDHLSSLKRNMILRKLLKARKE 168
>gi|209693699|ref|YP_002261627.1| peptide deformylase [Aliivibrio salmonicida LFI1238]
gi|238058218|sp|B6EP21.1|DEF_ALISL RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|208007650|emb|CAQ77760.1| peptide deformylase (polypeptide deformylase) [Aliivibrio
salmonicida LFI1238]
Length = 169
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+P+ ++ I +M ETMY GIGLAA+QVD H+++++
Sbjct: 1 MAVLEVLTFPDDRLRTVAKPVKTVTPEIQTFIDDMIETMYDEEGIGLAATQVDFHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++ V INP I S + I EGCLS+PG + RS + V AL+ +G F
Sbjct: 61 IDVSETRDEPMVLINPVITQKSGDDGI-EEGCLSVPGAKGMVPRSAEVSVTALDRDGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKER 155
A+ LLAIC+QHE+DHL GK+F++YLS K++R
Sbjct: 120 SFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKR 154
>gi|383648789|ref|ZP_09959195.1| peptide deformylase [Sphingomonas elodea ATCC 31461]
Length = 174
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 113/172 (65%), Gaps = 7/172 (4%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ PD RL+ ++ P+ D +L+ +I +M +TMY A GIGLAA QV + K+L++
Sbjct: 1 MAILPIVEVPDPRLRLVSTPVEAVDDDLRTLIGDMFDTMYDAPGIGLAAIQVGVAKRLIV 60
Query: 61 LDISKNNNQ-------LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHAL 113
+D+ + ++ +VFINP+I ++E +Y EGCLS+P F ++R R RV L
Sbjct: 61 MDLQEEEDEEGKPIRHPRVFINPEIHEPAEELSVYTEGCLSVPDQFADVERPARCRVTWL 120
Query: 114 NIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ +G + + EGLLA C+QHE+DHL+G +F+++LS K++ ++KK K K
Sbjct: 121 DEKGAQHDEVFEGLLATCIQHEMDHLDGIVFLDHLSRLKRDMLLKKLNKARK 172
>gi|17988608|ref|NP_541241.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|23500757|ref|NP_700197.1| peptide deformylase [Brucella suis 1330]
gi|62317863|ref|YP_223716.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941]
gi|83269841|ref|YP_419132.1| peptide deformylase [Brucella melitensis biovar Abortus 2308]
gi|148557936|ref|YP_001257946.1| peptide deformylase [Brucella ovis ATCC 25840]
gi|161621082|ref|YP_001594968.1| peptide deformylase [Brucella canis ATCC 23365]
gi|163845148|ref|YP_001622803.1| peptide deformylase [Brucella suis ATCC 23445]
gi|225629484|ref|ZP_03787517.1| peptide deformylase [Brucella ceti str. Cudo]
gi|225686789|ref|YP_002734761.1| peptide deformylase [Brucella melitensis ATCC 23457]
gi|237817404|ref|ZP_04596396.1| peptide deformylase [Brucella abortus str. 2308 A]
gi|256015794|ref|YP_003105803.1| peptide deformylase [Brucella microti CCM 4915]
gi|340792797|ref|YP_004758261.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|376278980|ref|YP_005109013.1| peptide deformylase [Brucella suis VBI22]
gi|384223540|ref|YP_005614705.1| peptide deformylase [Brucella suis 1330]
gi|17984410|gb|AAL53505.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|23464412|gb|AAN34202.1| polypeptide deformylase [Brucella suis 1330]
gi|62198056|gb|AAX76355.1| Def-2, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941]
gi|82940115|emb|CAJ13163.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus
2308]
gi|148369221|gb|ABQ62093.1| peptide deformylase [Brucella ovis ATCC 25840]
gi|161337893|gb|ABX64197.1| peptide deformylase [Brucella canis ATCC 23365]
gi|163675871|gb|ABY39981.1| peptide deformylase [Brucella suis ATCC 23445]
gi|225615980|gb|EEH13029.1| peptide deformylase [Brucella ceti str. Cudo]
gi|225642894|gb|ACO02807.1| peptide deformylase [Brucella melitensis ATCC 23457]
gi|237788217|gb|EEP62433.1| peptide deformylase [Brucella abortus str. 2308 A]
gi|255998454|gb|ACU50141.1| peptide deformylase [Brucella microti CCM 4915]
gi|340561256|gb|AEK56493.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|343384988|gb|AEM20479.1| peptide deformylase [Brucella suis 1330]
gi|358260418|gb|AEU08151.1| peptide deformylase [Brucella suis VBI22]
Length = 187
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 110/164 (67%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P+I PD L+++++P+ FD L+K +M +TMY A GIGLAA QV ++L+
Sbjct: 13 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 72
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K +F+NP I+ S ++ Y EGCLS+P + +++R ++V+ + +GK
Sbjct: 73 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 132
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GL+A CLQHEIDHLNG +FI+++S K++ +IKKF K
Sbjct: 133 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKK 176
>gi|89070116|ref|ZP_01157446.1| peptide deformylase [Oceanicola granulosus HTCC2516]
gi|89044337|gb|EAR50480.1| peptide deformylase [Oceanicola granulosus HTCC2516]
Length = 176
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 103/165 (62%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT PI+ +PD RLK A P+ E ++++ +M ETMY A GIGLAA QV + K++L+
Sbjct: 4 MTKRPILIHPDPRLKTAATPVGEITDEVRRLADDMLETMYDAPGIGLAAPQVGVLKRVLV 63
Query: 61 LDISKNNNQLQ---VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D K+ + V +P+I+W S + +Y EGCLS+P + +++R + V ++EG
Sbjct: 64 MDCVKDEGEAPRPLVLCDPEIVWTSDARNVYEEGCLSIPDQYAEVERPAEVEVRWTDLEG 123
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+GL A C+QHEIDHL+GK+FI+YL K++ I +K K
Sbjct: 124 GARRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQK 168
>gi|416068279|ref|ZP_11582714.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
f str. D18P1]
gi|348001177|gb|EGY41931.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
f str. D18P1]
Length = 170
Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 107/161 (66%), Gaps = 1/161 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YP+ LK + +P+ E + N KII NM +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPEEHLKVVCDPVVEVNDNTCKIIDNMFDTMYQEGGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ E I EGCLS+PG + R +++ V AL+ GK F
Sbjct: 61 IDIEGDKQNQLVLINPEILESEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRHGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFL 161
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +
Sbjct: 120 TLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLI 160
>gi|288959246|ref|YP_003449587.1| peptide deformylase [Azospirillum sp. B510]
gi|288911554|dbj|BAI73043.1| peptide deformylase [Azospirillum sp. B510]
Length = 170
Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 106/164 (64%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ P LK+ A+P+ E D + K++ +M ETMY A GIGLAA QV + ++++
Sbjct: 1 MARLPILVAPHPILKRKAQPVAEVDARVVKLMDDMVETMYDAAGIGLAAPQVGVLDRVIV 60
Query: 61 LDISKNNNQLQV--FINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+ + NP+IIW S++K + EGCLS+P + ++ R +R+RV L+ +
Sbjct: 61 VDVHEKGEPPNPIRLANPEIIWSSEDKAVCEEGCLSVPEQYAEVTRPQRVRVRYLDERNQ 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI AEG+LA CLQHEIDHLNG +F++YLS K+ ++KK K
Sbjct: 121 PQEIEAEGMLATCLQHEIDHLNGVLFVDYLSMLKRNILLKKVQK 164
>gi|444920399|ref|ZP_21240242.1| Peptide deformylase [Wohlfahrtiimonas chitiniclastica SH04]
gi|444508718|gb|ELV08887.1| Peptide deformylase [Wohlfahrtiimonas chitiniclastica SH04]
Length = 172
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 113/170 (66%), Gaps = 4/170 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+ L +IY P L++ A +T FD +L ++ M ETMY GIGLAA+QV+ +++ +
Sbjct: 1 MSKLDVIYVPHETLRQTASVVTTFDKDLYELANGMLETMYENNGIGLAANQVNDLRRIFV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFN-KIKRSKRIRVHALNIEGKM 119
D ++ N ++INP+IIW S++ EGCLSLP I++ I+R +++ A +I G
Sbjct: 61 TDCTEEKNDPMIYINPEIIWESEDVAESEEGCLSLPSIYSGPIERPFAVKIRAQDIHGDF 120
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIK---KFLKNIKK 166
FE AE LLA C+QHE+DHLNG +FI+YLS K+ER +K K+LK+++K
Sbjct: 121 FEREAEDLLARCMQHELDHLNGILFIDYLSRLKRERALKKLEKYLKDMEK 170
>gi|40063276|gb|AAR38094.1| polypeptide deformylase [uncultured marine bacterium 578]
Length = 165
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 108/147 (73%), Gaps = 1/147 (0%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILD 62
+L I+ YPD RL+ IA+P+ + ++KK + +M ETMY A GIGLAA+QV+ H++++++D
Sbjct: 2 ILDILKYPDKRLRTIAKPVVSVNSDIKKQVKDMFETMYDAPGIGLAATQVNFHQRIIVID 61
Query: 63 ISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
IS++ NQ INP+II S E + + EGCLS+P + +KR+ +I+V ALN G F+I
Sbjct: 62 ISEDCNQPFCLINPEIIEKSGEIE-WEEGCLSVPDYYENVKRANKIKVCALNEHGNTFDI 120
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLS 149
A +LAIC+QHE+DHLNG +F+++LS
Sbjct: 121 EANEMLAICIQHEMDHLNGILFVDHLS 147
>gi|402823206|ref|ZP_10872643.1| peptide deformylase [Sphingomonas sp. LH128]
gi|402263269|gb|EJU13195.1| peptide deformylase [Sphingomonas sp. LH128]
Length = 189
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 112/184 (60%), Gaps = 22/184 (11%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+ PD RLK+++ P+ +FD LK ++ +M ETMYHA GIGLAA QV + ++L+
Sbjct: 1 MAIREILEVPDQRLKQVSAPVEKFDDELKTLVDDMFETMYHAPGIGLAAIQVGVPLRVLV 60
Query: 61 LDISKNNNQLQ----------------------VFINPKIIWYSKEKQIYNEGCLSLPGI 98
+D+ ++ + +FINP+I+ S E +Y EGCLS+P I
Sbjct: 61 IDLQPDDEDAEPEVCTSHGDHHHTHQPTKKEPRIFINPEILDPSDEHIVYQEGCLSVPEI 120
Query: 99 FNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIK 158
F ++R RIR +++GK+ E +GLLAICLQHE+DHL G +FI++LS K++ +K
Sbjct: 121 FADVERPSRIRARWQDLDGKVHEEDMDGLLAICLQHEMDHLEGILFIDHLSRLKRQMALK 180
Query: 159 KFLK 162
K K
Sbjct: 181 KLEK 184
>gi|330813514|ref|YP_004357753.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063]
gi|327486609|gb|AEA81014.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063]
Length = 170
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 107/164 (65%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ PD L+K + P+ E + +KK++ NM ETMY A GIGLAA QV I K++++
Sbjct: 1 MSILTIVKEPDPILRKKSLPVKEVNGEIKKLMKNMLETMYAAPGIGLAAVQVGILKRIIV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DIS + + F+NPKI+W S + EGCLS+PG F IKR + V L+ GK
Sbjct: 61 IDISGETSLKKPIFFVNPKIVWKSDILETKQEGCLSIPGHFGNIKRPEACHVKYLDYSGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLA C+QHEIDH NG +FI+YLS KK IIKK K
Sbjct: 121 EKTLKADGLLATCIQHEIDHCNGTLFIDYLSKLKKAFIIKKLTK 164
>gi|189023113|ref|YP_001932854.1| peptide deformylase [Brucella abortus S19]
gi|256262077|ref|ZP_05464609.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
gi|260545098|ref|ZP_05820919.1| peptide deformylase [Brucella abortus NCTC 8038]
gi|260565079|ref|ZP_05835564.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|260567720|ref|ZP_05838189.1| peptide deformylase [Brucella suis bv. 4 str. 40]
gi|260756222|ref|ZP_05868570.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
gi|260760409|ref|ZP_05872757.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
gi|260763649|ref|ZP_05875981.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260882046|ref|ZP_05893660.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
gi|261216476|ref|ZP_05930757.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
gi|261220844|ref|ZP_05935125.1| peptide deformylase [Brucella ceti B1/94]
gi|261312913|ref|ZP_05952110.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
gi|261318308|ref|ZP_05957505.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|261322743|ref|ZP_05961940.1| peptide deformylase [Brucella neotomae 5K33]
gi|261750724|ref|ZP_05994433.1| peptide deformylase [Brucella suis bv. 5 str. 513]
gi|261753980|ref|ZP_05997689.1| peptide deformylase [Brucella suis bv. 3 str. 686]
gi|261757222|ref|ZP_06000931.1| peptide deformylase [Brucella sp. F5/99]
gi|265986106|ref|ZP_06098663.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
gi|265990325|ref|ZP_06102882.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
gi|265992568|ref|ZP_06105125.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
gi|265995800|ref|ZP_06108357.1| peptide deformylase [Brucella ceti M490/95/1]
gi|294853988|ref|ZP_06794660.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
gi|297249202|ref|ZP_06932903.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
gi|376271532|ref|YP_005114577.1| peptide deformylase [Brucella abortus A13334]
gi|376277456|ref|YP_005153517.1| peptide deformylase [Brucella canis HSK A52141]
gi|384213548|ref|YP_005602631.1| peptide deformylase [Brucella melitensis M5-90]
gi|384410650|ref|YP_005599270.1| peptide deformylase [Brucella melitensis M28]
gi|384447147|ref|YP_005661365.1| peptide deformylase [Brucella melitensis NI]
gi|423168232|ref|ZP_17154934.1| peptide deformylase [Brucella abortus bv. 1 str. NI435a]
gi|423172333|ref|ZP_17159007.1| peptide deformylase [Brucella abortus bv. 1 str. NI474]
gi|423173936|ref|ZP_17160606.1| peptide deformylase [Brucella abortus bv. 1 str. NI486]
gi|423175812|ref|ZP_17162478.1| peptide deformylase [Brucella abortus bv. 1 str. NI488]
gi|423181762|ref|ZP_17168402.1| peptide deformylase [Brucella abortus bv. 1 str. NI010]
gi|423184895|ref|ZP_17171531.1| peptide deformylase [Brucella abortus bv. 1 str. NI016]
gi|423188048|ref|ZP_17174661.1| peptide deformylase [Brucella abortus bv. 1 str. NI021]
gi|423190465|ref|ZP_17177074.1| peptide deformylase [Brucella abortus bv. 1 str. NI259]
gi|54036953|sp|P63914.1|DEF_BRUSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|54040741|sp|P63913.1|DEF_BRUME RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189021687|gb|ACD74408.1| Formylmethionine deformylase [Brucella abortus S19]
gi|260098369|gb|EEW82243.1| peptide deformylase [Brucella abortus NCTC 8038]
gi|260152722|gb|EEW87815.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|260154385|gb|EEW89466.1| peptide deformylase [Brucella suis bv. 4 str. 40]
gi|260670727|gb|EEX57667.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
gi|260674070|gb|EEX60891.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260676330|gb|EEX63151.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
gi|260871574|gb|EEX78643.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
gi|260918083|gb|EEX84944.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
gi|260919428|gb|EEX86081.1| peptide deformylase [Brucella ceti B1/94]
gi|261297531|gb|EEY01028.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|261298723|gb|EEY02220.1| peptide deformylase [Brucella neotomae 5K33]
gi|261301939|gb|EEY05436.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
gi|261737206|gb|EEY25202.1| peptide deformylase [Brucella sp. F5/99]
gi|261740477|gb|EEY28403.1| peptide deformylase [Brucella suis bv. 5 str. 513]
gi|261743733|gb|EEY31659.1| peptide deformylase [Brucella suis bv. 3 str. 686]
gi|262550097|gb|EEZ06258.1| peptide deformylase [Brucella ceti M490/95/1]
gi|262763438|gb|EEZ09470.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
gi|263000994|gb|EEZ13684.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
gi|263091766|gb|EEZ16097.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
gi|264658303|gb|EEZ28564.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
gi|294819643|gb|EFG36643.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
gi|297173071|gb|EFH32435.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
gi|326411197|gb|ADZ68261.1| peptide deformylase [Brucella melitensis M28]
gi|326554488|gb|ADZ89127.1| peptide deformylase [Brucella melitensis M5-90]
gi|349745144|gb|AEQ10686.1| peptide deformylase [Brucella melitensis NI]
gi|363402704|gb|AEW19673.1| peptide deformylase [Brucella abortus A13334]
gi|363405830|gb|AEW16124.1| peptide deformylase [Brucella canis HSK A52141]
gi|374536755|gb|EHR08275.1| peptide deformylase [Brucella abortus bv. 1 str. NI474]
gi|374538725|gb|EHR10232.1| peptide deformylase [Brucella abortus bv. 1 str. NI435a]
gi|374539937|gb|EHR11439.1| peptide deformylase [Brucella abortus bv. 1 str. NI486]
gi|374546352|gb|EHR17812.1| peptide deformylase [Brucella abortus bv. 1 str. NI010]
gi|374547195|gb|EHR18654.1| peptide deformylase [Brucella abortus bv. 1 str. NI016]
gi|374554228|gb|EHR25641.1| peptide deformylase [Brucella abortus bv. 1 str. NI021]
gi|374556505|gb|EHR27910.1| peptide deformylase [Brucella abortus bv. 1 str. NI259]
gi|374556612|gb|EHR28016.1| peptide deformylase [Brucella abortus bv. 1 str. NI488]
Length = 175
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 110/164 (67%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P+I PD L+++++P+ FD L+K +M +TMY A GIGLAA QV ++L+
Sbjct: 1 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K +F+NP I+ S ++ Y EGCLS+P + +++R ++V+ + +GK
Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GL+A CLQHEIDHLNG +FI+++S K++ +IKKF K
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKK 164
>gi|408787233|ref|ZP_11198964.1| peptide deformylase [Rhizobium lupini HPC(L)]
gi|424909300|ref|ZP_18332677.1| peptide deformylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392845331|gb|EJA97853.1| peptide deformylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|408486864|gb|EKJ95187.1| peptide deformylase [Rhizobium lupini HPC(L)]
Length = 170
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ ++PI + D + ++ +M ETMY A GIGLAA Q+ + ++LL+
Sbjct: 1 MTIKPLIILPDPVLRQQSKPIEKVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+++ + VFINP+I+ S + Y EGCLS+P + +++R + V + +GK
Sbjct: 61 IDVAREGEEKTPIVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQYVGRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K++ +IKKF K +
Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAAR 167
>gi|418296812|ref|ZP_12908655.1| peptide deformylase [Agrobacterium tumefaciens CCNWGS0286]
gi|355538987|gb|EHH08229.1| peptide deformylase [Agrobacterium tumefaciens CCNWGS0286]
Length = 170
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++ ++PI + D + ++ +M ETMY A GIGLAA Q+ + +++L+
Sbjct: 1 MTIKPLIILPDPVLRQQSKPIEKVDAEVLRLADDMLETMYDAPGIGLAAIQIGVARRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+++ + VFINP+I+ S + Y EGCLS+P + +++R + V + +GK
Sbjct: 61 IDVAREGEEKTPIVFINPEILKVSDDVSTYEEGCLSIPDYYAEVERPASLTVQYVGRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLA CLQHEIDHLNG +FI+++S K++ +IKKF K +
Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAAR 167
>gi|188574933|ref|YP_001911862.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188519385|gb|ACD57330.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 152
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Query: 28 LKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIWYSKEKQI 87
+ ++ +M +TMY A GIGLAASQVD+HK+ +++D+S N QVF+NP+I+ E Q+
Sbjct: 13 FQALLDDMFQTMYEAPGIGLAASQVDVHKRFMVIDVSDEKNLPQVFVNPEIVSKQGE-QL 71
Query: 88 YNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEY 147
EGCLS+PGI+ + R+ I V L+ +G+ E+ A+GLLA+C+QHE+DHL+GK+F++Y
Sbjct: 72 CQEGCLSVPGIYADVSRADAITVRYLDRQGQAQELHADGLLAVCIQHEMDHLDGKLFVDY 131
Query: 148 LSNFKKERIIKKFLKNIK 165
LS K+E + KK K K
Sbjct: 132 LSPLKREMVRKKLAKQRK 149
>gi|384921358|ref|ZP_10021341.1| peptide deformylase [Citreicella sp. 357]
gi|384464774|gb|EIE49336.1| peptide deformylase [Citreicella sp. 357]
Length = 173
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 105/162 (64%), Gaps = 4/162 (2%)
Query: 5 PIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS 64
PI+ +PD RLKK+ +P+ + L+ + +M ETMY A GIGLAA QV + +++ LD +
Sbjct: 4 PILIHPDPRLKKLCDPVPDMSDALRALAEDMLETMYDAPGIGLAAPQVGVMSRMIALDCA 63
Query: 65 KNNNQLQ----VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
K +N + V +NP++I S E+ +Y EGCLS+P + ++R K + V ++++G
Sbjct: 64 KPDNGEEARPLVMVNPRVIASSDERNVYEEGCLSIPDQYADVERPKLVEVEWMDLDGAAR 123
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+GL A C+QHEIDHL+GK+FI+YL K++ I +K +K
Sbjct: 124 REEFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVK 165
>gi|306840227|ref|ZP_07473002.1| peptide deformylase [Brucella sp. BO2]
gi|306289832|gb|EFM61011.1| peptide deformylase [Brucella sp. BO2]
Length = 175
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 109/164 (66%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P+I PD L++++ P+ FD L+K +M +TMY A GIGLAA QV ++L+
Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K +F+NP I+ S ++ Y EGCLS+P + +++R ++V+ + +GK
Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GL+A CLQHEIDHLNG +FI+++S K++ +IKKF K
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKK 164
>gi|39933698|ref|NP_945974.1| peptide deformylase [Rhodopseudomonas palustris CGA009]
gi|192289055|ref|YP_001989660.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
gi|81698398|sp|Q6NC51.1|DEF_RHOPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|229487564|sp|B3QCH1.1|DEF_RHOPT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|39647544|emb|CAE26065.1| putative N-formylmethionylaminoacyl-tRNA deformylase
[Rhodopseudomonas palustris CGA009]
gi|192282804|gb|ACE99184.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
Length = 175
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 111/170 (65%), Gaps = 4/170 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD RL++I++P+TE ++K+ +M E+MY A GIGLAA Q+ +L+
Sbjct: 1 MALREIIILPDKRLREISKPVTEVTTEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60
Query: 61 LDISK----NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIE 116
+DI + + + FINP+I+ S E +Y EGCLS+P + +++R K +R+ +++
Sbjct: 61 MDIVRKEGDGKSDPRAFINPEIVGASSEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120
Query: 117 GKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
G + E A+GL A C+QHEIDHLNG +F+++LS K+ +I+KF K K+
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAKR 170
>gi|163757845|ref|ZP_02164934.1| peptide deformylase [Hoeflea phototrophica DFL-43]
gi|162285347|gb|EDQ35629.1| peptide deformylase [Hoeflea phototrophica DFL-43]
Length = 172
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 108/168 (64%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P++ PD L++ + P+ D L+ I +M ETMY A GIGLAA QV + ++LL+
Sbjct: 1 MTIKPLVLLPDPILRQQSLPVERVDAELEGFIDDMLETMYDAPGIGLAAIQVGVPRRLLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++ + QVFINP+++ +Y EGCLS+P + ++R + I V L +GK
Sbjct: 61 IDVAGKDEPKSPQVFINPEVVATGDGISVYEEGCLSIPDYYADVERPETITVKYLGRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
A+GLLA CLQHEIDHLNG +FI+++S K++ +++KF K K+
Sbjct: 121 EHTTEADGLLATCLQHEIDHLNGVLFIDHISKLKRDMVVRKFTKLAKQ 168
>gi|338707442|ref|YP_004661643.1| peptide deformylase [Zymomonas mobilis subsp. pomaceae ATCC 29192]
gi|336294246|gb|AEI37353.1| peptide deformylase [Zymomonas mobilis subsp. pomaceae ATCC 29192]
Length = 186
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 109/180 (60%), Gaps = 15/180 (8%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPII PD RL++ + P+ FD NL+ +I +M ETMY A GIGLAA QV + K+LL+
Sbjct: 1 MAVLPIIEVPDPRLREKSVPVENFDQNLQTLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60
Query: 61 LDI---------------SKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRS 105
+D+ KN + VFINP+I E+ IYNEGCLS+P + +KR
Sbjct: 61 IDLQSPDENEGKDNDKGKDKNKHTPLVFINPEITPEGDEESIYNEGCLSVPDQYADVKRP 120
Query: 106 KRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
K I L+ G E +GLLA CLQHEIDHL G +FI++LS K+ ++KK LK K
Sbjct: 121 KVIHAKWLDRNGMPHEERLDGLLATCLQHEIDHLEGILFIDHLSRLKRGILMKKLLKERK 180
>gi|332289299|ref|YP_004420151.1| peptide deformylase [Gallibacterium anatis UMN179]
gi|330432195|gb|AEC17254.1| peptide deformylase [Gallibacterium anatis UMN179]
Length = 171
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 107/162 (66%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A P+ + D +++ I NM ETMY GIGLAA+QV+ H++++
Sbjct: 1 MAILDVLCFPDERLRTVAAPVEKVDDEIREFIDNMFETMYQQEGIGLAATQVNRHQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + + V INP+I+ E I EGCLS+PG + R +++ V AL+ G+ F
Sbjct: 61 IDVEGDKSNQLVLINPEIVESDGETGI-EEGCLSVPGFRGLVPRKEKVTVKALDRNGEPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A LLAIC+QHEIDHLNG +F++YLS K+ RI K +K
Sbjct: 120 TLEASDLLAICIQHEIDHLNGVMFVDYLSPLKRNRIKDKLVK 161
>gi|343518386|ref|ZP_08755378.1| peptide deformylase [Haemophilus pittmaniae HK 85]
gi|343393674|gb|EGV06227.1| peptide deformylase [Haemophilus pittmaniae HK 85]
Length = 158
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YPD LK + EP++E + ++KI+ +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTSLNVLIYPDEHLKVVCEPVSEVNDEIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + V INP+I+ E I EGCLS+PG + R +++ V AL+ G+ F
Sbjct: 61 IDVEGDKQNQLVLINPEILASEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRNGQEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI
Sbjct: 120 TLNADGLLAICIQHEIDHLNGILFVDYLSPLKRQRI 155
>gi|315635057|ref|ZP_07890338.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
gi|315476319|gb|EFU67070.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
Length = 170
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YP+ LK + +P+ + + +KII +M +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPEEHLKVVCDPVLNVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ E I EGCLS+PG + R +++ V AL+ +GK F
Sbjct: 61 IDIEGDKQNQLVLINPEILDAEGETGI-EEGCLSIPGFRALVPRKEKVTVKALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GLLAIC+QHEIDHLNG +F++YLS K++RI +K +K
Sbjct: 120 TLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLMK 161
>gi|110632755|ref|YP_672963.1| peptide deformylase [Chelativorans sp. BNC1]
gi|122966266|sp|Q11LC7.1|DEF_MESSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|110283739|gb|ABG61798.1| peptide deformylase [Chelativorans sp. BNC1]
Length = 177
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 110/164 (67%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P++ PD L+++++P+ D +L+K +M ETMY A GIGLAA QV ++L+
Sbjct: 1 MAIRPLVTLPDPLLRQVSKPVERVDESLRKFAGDMLETMYDAPGIGLAAIQVGEPLRMLV 60
Query: 61 LDISKNNNQ--LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD+++ + QVFINP+I+ S + EGCLS+P + +++R + V ++++GK
Sbjct: 61 LDVAEKDEPKNPQVFINPEIVSRSDVPSFHEEGCLSIPDYYAEVERPAEVTVKYVDLDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+G+LA CLQHEIDHLNG +FI+YLS K++ +++KF K
Sbjct: 121 EQIVEAKGILATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFRK 164
>gi|374292877|ref|YP_005039912.1| Formylmethionine deformylase [Azospirillum lipoferum 4B]
gi|357424816|emb|CBS87695.1| Formylmethionine deformylase [Azospirillum lipoferum 4B]
Length = 170
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 107/164 (65%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LPI+ P LK+ A+P+ E D+ + K++ +M ETMY A GIGLAA QV + ++++
Sbjct: 1 MARLPILVAPHPILKRKAQPVAEVDVRVVKLMDDMVETMYDANGIGLAAPQVGVLDRVIV 60
Query: 61 LDISKNNNQLQV--FINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+ + ++ NP+I+W S EK + EGCLS+P + + R +RIRV L+ + +
Sbjct: 61 VDVHEKDDPPNPIRLANPEIVWSSDEKAVCEEGCLSVPEQYADVTRPQRIRVRYLDEKNR 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+G+LA C+QHEIDHLNG +F++YLS K+ ++KK K
Sbjct: 121 QQEFEADGMLATCIQHEIDHLNGVLFVDYLSMLKRNILLKKVQK 164
>gi|144898454|emb|CAM75318.1| peptide deformylase [Magnetospirillum gryphiswaldense MSR-1]
Length = 170
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 109/168 (64%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ PD RLK+ A + + D +++ ++ +M ETMY A GIGLAA QV + K++++
Sbjct: 1 MAVLSILTAPDPRLKQKAAVVADVDASIRTLMDDMLETMYAAPGIGLAAPQVAVGKRVIV 60
Query: 61 LDISKNNNQLQV--FINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
DI ++ + Q +NP+I+W S + Y EGCLS+P + + R + IRV + G
Sbjct: 61 ADIGRSEDDRQPVRMVNPEIVWVSDDDNTYEEGCLSVPEHYAAVVRPRAIRVRYRDETGT 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA LQHE+DHL+G +FI++LS+ K+ I++K LK K+
Sbjct: 121 HQEIDADGLLATVLQHEMDHLDGILFIDHLSSLKRNMILRKLLKAKKE 168
>gi|95928563|ref|ZP_01311310.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
gi|95135353|gb|EAT17005.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
Length = 171
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL I +YPD L +++EPI D ++++ +M ETMY A G+GLAA QV I ++L++
Sbjct: 1 MSLLKIYHYPDAVLAEMSEPIAVVDDEIRQLAADMAETMYAAPGVGLAAPQVGISRRLIV 60
Query: 61 LDIS-KNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
LD + N +L +NP+I+ + EGCLS+PG + +KRS ++V ++++G+
Sbjct: 61 LDCGGEENPELIKAVNPEILERQGDS-CEEEGCLSVPGYYAAVKRSSWVKVRYVDMDGQT 119
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E AEGLLAIC QHEIDHL+GK+F++ LS+ KK KK+ K
Sbjct: 120 VEREAEGLLAICFQHEIDHLDGKLFVDRLSSLKKGMFRKKYPK 162
>gi|90406714|ref|ZP_01214907.1| peptide deformylase [Psychromonas sp. CNPT3]
gi|90312167|gb|EAS40259.1| peptide deformylase [Psychromonas sp. CNPT3]
Length = 170
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++++PD RL+ +A+ ++ F L I +M +TMY G+GLAA+QVDIH+++++
Sbjct: 1 MALLDVLHFPDPRLRTVAKKVSNFTPELIDIAQDMIDTMYEENGVGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + V INP+II S E + EGCLS+P I I R++ + V +++G
Sbjct: 61 IDVSDERDDPIVLINPEIISQSGE-ECSQEGCLSVPDINADITRAEFVTVKFQDVQGNAQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+I A+ LLA+C+QHE+DHL GK+FI+YLS FK++RI K K
Sbjct: 120 QIEADSLLAVCIQHELDHLIGKLFIDYLSPFKQKRIKTKLEK 161
>gi|197121178|ref|YP_002133129.1| peptide deformylase [Anaeromyxobacter sp. K]
gi|196171027|gb|ACG72000.1| peptide deformylase [Anaeromyxobacter sp. K]
Length = 185
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 110/162 (67%), Gaps = 4/162 (2%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS- 64
I+ +PD LK++A+P+ D +++++ +M ETMY A G+GLAA Q+ + K+++++D S
Sbjct: 5 IVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVIDTSP 64
Query: 65 -KNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEII 123
+ L +NP+I+ E Y EGCLS+PG + R R+ V AL+ +GK FE+
Sbjct: 65 RQEGQTLIHLVNPEIVRGEGE-LTYTEGCLSIPGEAEDVDRFARVWVRALDRQGKPFELE 123
Query: 124 AEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
AEGLLA+ LQHE DHLNG +F+++LS+ K+E +I+K +K +K
Sbjct: 124 AEGLLAVALQHETDHLNGTVFVDHLSSLKRE-LIRKRMKKLK 164
>gi|83309342|ref|YP_419606.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
AMB-1]
gi|82944183|dbj|BAE49047.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
AMB-1]
Length = 190
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 109/168 (64%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ PD LK ++P+ D ++ ++ +M +TMYHA GIGLAA Q+ + +++++
Sbjct: 21 MAVLPILTAPDPVLKSKSKPVATVDDRIRTLLADMLDTMYHAPGIGLAAPQIGVLERVIV 80
Query: 61 LDISKNNNQLQV--FINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DI + +NP+I+W S E Y EGCLS+P ++ + R ++V L+ G
Sbjct: 81 MDIGRKEEDRAPIRMVNPEIVWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 140
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI+A+GLLA +QHE+DHL+G +FI++LS+ K+ I++K LK K+
Sbjct: 141 KQEILADGLLATVVQHEMDHLDGILFIDHLSSLKRNMILRKLLKARKE 188
>gi|220924615|ref|YP_002499917.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
gi|219949222|gb|ACL59614.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
Length = 173
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 112/168 (66%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P++ PD RL+ +EP+ ++K+ +M ETMY A G+GLAA Q+ +++
Sbjct: 1 MTIRPLVILPDARLRVTSEPVGTITGEVRKLASDMLETMYDAPGVGLAAIQIGEPTRIVT 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D SK+ V ++P+I+W S+E + Y EGCLS+P + ++ R R+RV ++G+
Sbjct: 61 VDTSKDKEARNPLVLLDPEIVWASEETRSYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ E A+GLLA CLQHEIDHLNG +FI+++S K++R++KKF K K+
Sbjct: 121 VVEQEADGLLATCLQHEIDHLNGVLFIDHISKLKRDRVLKKFAKAAKR 168
>gi|416893349|ref|ZP_11924537.1| peptide deformylase [Aggregatibacter aphrophilus ATCC 33389]
gi|347813903|gb|EGY30555.1| peptide deformylase [Aggregatibacter aphrophilus ATCC 33389]
Length = 170
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT L ++ YP+ LK + +P+ E + N +KII NM +TMY GIGLAA QVDI ++++
Sbjct: 1 MTALNVLIYPEEHLKVVCDPVVEVNNNTRKIIDNMFDTMYQEEGIGLAAPQVDILQRIIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ S+ K EGCLS+PG + R +++ + AL+ +GK F
Sbjct: 61 IDIEGDKQNQLVLINPEIL-ESEGKTGIEEGCLSIPGFRAWVPRKEKVTIRALDRDGKEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKER 155
+ A+GLLAIC+QHEIDHLNG +F++YLS K++R
Sbjct: 120 TLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQR 154
>gi|33152876|ref|NP_874229.1| peptide deformylase [Haemophilus ducreyi 35000HP]
gi|39930849|sp|Q7VKK9.1|DEF_HAEDU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|33149101|gb|AAP96618.1| peptide deformylase [Haemophilus ducreyi 35000HP]
Length = 171
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 106/162 (65%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ YPD RL K+ EP+T+ D L + I +M +TMY GIGLAASQV + K+++
Sbjct: 1 MSVLQVVLYPDDRLTKVCEPVTQVDDELNQFIDDMFDTMYQEGGIGLAASQVGVLKRVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+I+ E I EGCLS+PG + R ++I V ALN +G+
Sbjct: 61 IDIEGDKTNQVVLINPEILESCGETGI-EEGCLSIPGYRALVPRKEKITVKALNRQGEEV 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+ L AIC+QHEIDHLNG +F++++SN K++RI K K
Sbjct: 120 IYHADDLFAICIQHEIDHLNGIVFVDHISNLKRQRIKDKMQK 161
>gi|170742368|ref|YP_001771023.1| peptide deformylase [Methylobacterium sp. 4-46]
gi|168196642|gb|ACA18589.1| peptide deformylase [Methylobacterium sp. 4-46]
Length = 173
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 110/168 (65%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P++ PD RL+ + P+ ++K+ +M ETMY A G+GLAA QV +++
Sbjct: 1 MTIRPLVILPDARLRVTSSPVGTITGEVRKLAADMLETMYDAPGVGLAAIQVGEPTRIVT 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D SK+ V I+P+I+W S+E + Y EGCLS+P + ++ R R+RV ++G+
Sbjct: 61 IDTSKDKEARTPLVLIDPEIVWSSEETRAYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E A+GLLA CLQHE+DHLNG +FI+++S K++R++KKF K K+
Sbjct: 121 TVEQEADGLLATCLQHELDHLNGVLFIDHISKLKRDRVMKKFAKAAKR 168
>gi|75677243|ref|YP_319664.1| peptide deformylase [Nitrobacter winogradskyi Nb-255]
gi|74422113|gb|ABA06312.1| peptide deformylase [Nitrobacter winogradskyi Nb-255]
Length = 187
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 111/171 (64%), Gaps = 6/171 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + II PD +L+ ++ PI ++K+ +M ETMY A GIGLA Q+ +++
Sbjct: 13 MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIVT 72
Query: 61 LDISKNNNQ------LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D+++ + + +VFINP+I+ S+E +Y EGCLS+P + ++R R+R+ +
Sbjct: 73 MDLARRDEEGELTPRPRVFINPEILSASEELSVYEEGCLSIPEYYEAVERPSRVRIRFTD 132
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
++GK+ E AEGL A C+QHEIDHLNG +F+++LS K++R++KKF K K
Sbjct: 133 LDGKVHEEDAEGLFATCIQHEIDHLNGVLFVDHLSKLKRDRVMKKFTKAAK 183
>gi|119383399|ref|YP_914455.1| peptide deformylase [Paracoccus denitrificans PD1222]
gi|119373166|gb|ABL68759.1| peptide deformylase [Paracoccus denitrificans PD1222]
Length = 173
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MTL II +PD RLKKI EP+ ++ + +M TMY A G+GLAA QV + +L +
Sbjct: 1 MTLRSIILHPDPRLKKICEPVARITPEIETLAADMLATMYDAPGVGLAAPQVGVLSRLYV 60
Query: 61 LDISKNNNQLQ---VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D K+ + V +NP++ W S+ Y EGCLS+P + + R +RV L ++G
Sbjct: 61 MDCEKDPEAPRNPIVMVNPEVTWTSEALNTYEEGCLSIPEQYADVTRPAEVRVRWLGLDG 120
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
K E EGL A C QHEIDHL+G++FI++L K++ I +K +K
Sbjct: 121 KTHEREFEGLWATCAQHEIDHLDGRLFIDHLGPIKRQMITRKMVK 165
>gi|306846236|ref|ZP_07478798.1| peptide deformylase [Brucella inopinata BO1]
gi|306273487|gb|EFM55348.1| peptide deformylase [Brucella inopinata BO1]
Length = 175
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 108/164 (65%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P+I PD L++++ P+ FD L+K +M +TMY A GIGLAA QV ++L+
Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K +F+NP I+ S + Y EGCLS+P + +++R ++V+ + +GK
Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKCSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+GL+A CLQHEIDHLNG +FI+++S K++ +IKKF K
Sbjct: 121 PQSMDADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKK 164
>gi|319406474|emb|CBI80115.1| polypeptide deformylase [Bartonella sp. 1-1C]
Length = 176
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ ++ PD L+++++P+ D ++K+ +M ETMY+A GIGLAA QV + ++L+
Sbjct: 1 MSIKSLVILPDPILREVSKPVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60
Query: 61 LDISKNN---NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+DI + N L V INP+I+W S E+ +Y EGCLS+P F +++R K + + + EG
Sbjct: 61 VDIHPKDAPKNPL-VIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLCMCYRDREG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
K EI A LLA CLQHEIDHLNG +FI+++S K++ +I+KF K K
Sbjct: 120 KQVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAK 167
>gi|223041757|ref|ZP_03611950.1| peptide deformylase [Actinobacillus minor 202]
gi|240948040|ref|ZP_04752457.1| peptide deformylase [Actinobacillus minor NM305]
gi|223017441|gb|EEF15859.1| peptide deformylase [Actinobacillus minor 202]
gi|240297656|gb|EER48133.1| peptide deformylase [Actinobacillus minor NM305]
Length = 170
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 106/162 (65%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ YPD L K+ EP+ D L + I +M +TMY GIGLAA QVD+ K+++
Sbjct: 1 MAVLEVVLYPDENLAKVCEPVAVVDDELNRFIDDMFDTMYEHEGIGLAAPQVDVLKRVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + V INP+II S E I EGCLS+PG + R ++++V ALN +G+
Sbjct: 61 IDIEGDKTNQVVLINPEIIESSGETGI-EEGCLSIPGHRALVPRKEKVKVKALNRQGEEV 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
A+GL AIC+QHEIDHLNG +F+++LS K++RI +K +K
Sbjct: 120 VYDADGLFAICIQHEIDHLNGILFVDHLSPLKRQRIKEKMVK 161
>gi|163795436|ref|ZP_02189403.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
gi|159179422|gb|EDP63953.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
Length = 175
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 105/155 (67%), Gaps = 2/155 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPII+ PD LK + D ++++I +M +TMY A G+GLAA QV + K++++
Sbjct: 1 MAILPIIWAPDPVLKTKCRSVDVVDDEVRRLIDDMFQTMYFAPGVGLAAPQVGVTKRVIV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++ + + Q +NP+I+W S QIY EGCLSLP ++ ++R+ ++V L+ +G
Sbjct: 61 VDVAGKDEKPQPIALVNPEIVWRSDATQIYEEGCLSLPELYADVERASHVKVRYLDRDGA 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKK 153
+I EGLLA+CLQHEIDH++G +F++++S K+
Sbjct: 121 EQKIEGEGLLAVCLQHEIDHIDGVLFVDHISALKR 155
>gi|197103839|ref|YP_002129216.1| polypeptide deformylase [Phenylobacterium zucineum HLK1]
gi|238690164|sp|B4RDT8.1|DEF_PHEZH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|196477259|gb|ACG76787.1| polypeptide deformylase [Phenylobacterium zucineum HLK1]
Length = 169
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+ P LK++++P+ + D L+ ++ +M ETMY A GIGLAA Q+ + K++++
Sbjct: 1 MAIREILVVPHPALKQVSQPVEKVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+++ + Q F+NP+I+W S + Y EGCLS+P +++++R R+++ LN +G+
Sbjct: 61 MDLAREGEEKQPRYFVNPEILWASDDTAPYEEGCLSVPEYYDEVERPARVKLRYLNYQGE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKER 155
E AEGL A+C+QHE+DHL G +FI++LS K+E+
Sbjct: 121 QVEEDAEGLFAVCIQHEMDHLEGVLFIDHLSRLKREQ 157
>gi|84500579|ref|ZP_00998828.1| peptide deformylase [Oceanicola batsensis HTCC2597]
gi|84391532|gb|EAQ03864.1| peptide deformylase [Oceanicola batsensis HTCC2597]
Length = 172
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 102/161 (63%), Gaps = 3/161 (1%)
Query: 5 PIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS 64
PI+ +PD RLKK+AEP+ + L+ +M ETMY A GIGLA Q+ + +L++LD
Sbjct: 4 PILIHPDPRLKKVAEPVADITDELRTTADDMLETMYDAPGIGLAGPQIGLMARLIVLDCV 63
Query: 65 KNNN---QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
K + V NP+++ S EK +Y EGCLS+P + +++R + V L+ +G + E
Sbjct: 64 KEETLPPRPLVMFNPRVVASSDEKSVYEEGCLSIPDQYAEVERPAEVTVEWLDRDGVLQE 123
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+GL A C+QHEIDHLNGK+FI+Y+S K++ I +K K
Sbjct: 124 ESFDGLWATCVQHEIDHLNGKLFIDYISPIKRQMITRKMQK 164
>gi|406998998|gb|EKE16793.1| hypothetical protein ACD_10C00794G0003 [uncultured bacterium]
Length = 170
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+ +PD RLKK EP+ L ++ +M ETMY A GIGLAA QV + ++++++D K
Sbjct: 5 ILIHPDPRLKKPCEPVAVVTDELAQLAADMLETMYDAPGIGLAAPQVGVMRRVIVMDCIK 64
Query: 66 NNN-QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIA 124
+ + V +NP++IW S++ Y EGCLS+P + ++KR +RV +++ G+ E
Sbjct: 65 DGPPEPMVLLNPQVIWSSEDLSTYEEGCLSIPDQYAEVKRPAAVRVRWMDLNGEEQERGF 124
Query: 125 EGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EGL A C+QHEIDHL+GK+FI+YL K++ I +K K
Sbjct: 125 EGLWATCVQHEIDHLDGKLFIDYLGPLKRQMITRKMEK 162
>gi|316932090|ref|YP_004107072.1| peptide deformylase [Rhodopseudomonas palustris DX-1]
gi|315599804|gb|ADU42339.1| peptide deformylase [Rhodopseudomonas palustris DX-1]
Length = 175
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 110/170 (64%), Gaps = 4/170 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD RL++I++P+ E ++K+ +M E+MY A GIGLAA Q+ +L+
Sbjct: 1 MALREIIILPDKRLREISKPVAEVTTEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60
Query: 61 LDISK----NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIE 116
+DI + + + FINP+I+ S E +Y EGCLS+P + +++R K +R+ +++
Sbjct: 61 MDIVRKEGDGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120
Query: 117 GKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
G + E A+GL A C+QHEIDHLNG +F+++LS K+ +I+KF K K+
Sbjct: 121 GNVREEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAKR 170
>gi|159042735|ref|YP_001531529.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
gi|157910495|gb|ABV91928.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
Length = 187
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ PI+ +PD RLKK +P+ E ++++ +M TMY A GIGLA QV +++
Sbjct: 14 MTIRPILIHPDPRLKKTVDPVAEITDEIRQLADDMLATMYDAPGIGLAGPQVAAMTRIIT 73
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D + + + V INP+I+W S+E Y EGCLS+P ++ ++R + V +EG
Sbjct: 74 MDCAPKDGEPDPMVLINPEIVWSSEEMNTYEEGCLSIPEMYADVERPAEVEVRWTTLEGG 133
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GL A C+QHEIDHLNGK+FI+YL K++ I +K +K
Sbjct: 134 DASARWGGLHATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVK 177
>gi|260752714|ref|YP_003225607.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|258552077|gb|ACV75023.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 177
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 110/171 (64%), Gaps = 6/171 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ PD RL++ + + FD NL+++I +M ETMY A GIGLAA QV + K+LL+
Sbjct: 1 MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60
Query: 61 LDISKNNNQLQ------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D+ + + VFINP++ +EK++YNEGCLS+P + +++R I +
Sbjct: 61 IDLQQPEEDGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+G E EGLLA CLQHE+DHL G +FI++LS K+ ++KK LK K
Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERK 171
>gi|407767854|ref|ZP_11115233.1| peptide deformylase 1 [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407288567|gb|EKF14044.1| peptide deformylase 1 [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 172
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 108/164 (65%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ PD RLK+ E + + + +++++ +M ETMY A GIGLAA Q+ + K++++
Sbjct: 1 MALRDILIVPDPRLKQECEEVAQVNDEIRELLDDMLETMYAAPGIGLAAPQIGVMKRVVV 60
Query: 61 LDISKNNNQLQVF--INPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+S + + Q +NP+IIW S++ +Y EGCLS+P + ++R + + L+ GK
Sbjct: 61 MDVSDDKEKPQPLKLVNPEIIWESEDTSVYQEGCLSIPEQYADVERPAEVGLRYLDENGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI A+GLLA C+QHE+DHL+G +F +YLS K+ I+KK K
Sbjct: 121 EHEIEADGLLATCIQHELDHLDGILFTDYLSALKRNMILKKVQK 164
>gi|452966644|gb|EME71653.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum sp. SO-1]
Length = 170
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 108/167 (64%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ PD LK ++P+ D ++ ++ +M ETMYHA GIGLAA Q+ + +++++
Sbjct: 1 MAVLPILTAPDPVLKSKSKPVAAVDDRIRALLADMLETMYHAPGIGLAAPQIGVLERVIV 60
Query: 61 LDISKNNNQLQV--FINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+DI + +NP+I+W S E Y EGCLS+P ++ + R ++V L+ G+
Sbjct: 61 MDIGRKEEDRDPIRMVNPEIVWASDEDNTYEEGCLSVPEHYSNVVRPAAVKVRYLDETGE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
EI A+GLLA +QHE+DHL+G +FI++LS+ K+ I++K LK K
Sbjct: 121 KKEIHADGLLATVVQHEMDHLDGILFIDHLSSLKRNMILRKLLKARK 167
>gi|397676362|ref|YP_006517900.1| Peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395397051|gb|AFN56378.1| Peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 29191]
Length = 178
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 110/172 (63%), Gaps = 7/172 (4%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ PD RL++ + + FD NL+++I +M ETMY A GIGLAA QV + K+LL+
Sbjct: 1 MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60
Query: 61 LDISKNNNQ-------LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHAL 113
+D+ + + VFINP++I +EK++Y EGCLS+P + +++R I
Sbjct: 61 IDLQQPEEEGGEAKRKPMVFINPELIPEGEEKRLYTEGCLSVPDQYGEVRRPSVINAKWQ 120
Query: 114 NIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ +G E EGLLA CLQHE+DHL G +FI++LS K+ ++KK LK K
Sbjct: 121 DRDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERK 172
>gi|84514541|ref|ZP_01001905.1| peptide deformylase [Loktanella vestfoldensis SKA53]
gi|84511592|gb|EAQ08045.1| peptide deformylase [Loktanella vestfoldensis SKA53]
Length = 173
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 107/165 (64%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ PI+ +PD RLKK+ P+ D +L+++ +M ETMY A GIGLAA QV + +++++
Sbjct: 1 MTIRPILIHPDPRLKKVTAPVASIDDDLRRLADDMLETMYEAPGIGLAAPQVAVMRRVIV 60
Query: 61 LDISKN---NNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D K+ + V INP+IIW S+ +Y+EGCLS+P + ++ R + V L ++G
Sbjct: 61 MDCQKDAEATPEPMVLINPEIIWSSEATSVYDEGCLSIPEQYAEVTRPAEVEVAWLGLDG 120
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
K +GL A C+QHEIDHL+GK+FI+ L K++ I +K K
Sbjct: 121 KPQRARFDGLWATCVQHEIDHLDGKLFIDCLGPLKRQMITRKMQK 165
>gi|13474065|ref|NP_105633.1| peptide deformylase [Mesorhizobium loti MAFF303099]
gi|23396550|sp|Q98D52.1|DEF_RHILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|14024817|dbj|BAB51419.1| N-formylmethionylaminoacyl-tRNA deformylase [Mesorhizobium loti
MAFF303099]
Length = 176
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 109/159 (68%), Gaps = 2/159 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P+I PD L+++++P+ D L+K+ +M TMY A GIGLAA Q+ ++L+
Sbjct: 1 MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++K + VFINP+I+ ++ + +Y EGCLS+P + +++R +RV L+ +GK
Sbjct: 61 IDLAKEDETPAPHVFINPEILESAEARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERII 157
+ E+ AEGL+A CLQHEIDHLNG +FI+++S K++ ++
Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVV 159
>gi|86157152|ref|YP_463937.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773663|gb|ABC80500.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 185
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 110/162 (67%), Gaps = 4/162 (2%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS- 64
I+ +PD LK++A+P+ D +++++ +M ETMY A G+GLAA Q+ + K+++++D S
Sbjct: 5 IVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVIDTSP 64
Query: 65 -KNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEII 123
+ L +NP+I+ E Y EGCLS+PG + R R+ V AL+ +GK FE+
Sbjct: 65 RQEGQTLLHLVNPEIVRGEGE-LTYTEGCLSIPGEAEDVDRFARVWVRALDRQGKPFELE 123
Query: 124 AEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
A+GLLA+ LQHE DHLNG +F+++LS+ K+E +I+K +K +K
Sbjct: 124 ADGLLAVALQHETDHLNGTMFVDHLSSLKRE-LIRKRMKKLK 164
>gi|56551709|ref|YP_162548.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
gi|384411411|ref|YP_005620776.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|81789136|sp|Q9REQ2.1|DEF_ZYMMO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|6685122|gb|AAF23793.1|AF213822_8 polypeptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
gi|56543283|gb|AAV89437.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
gi|335931785|gb|AEH62325.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
Length = 177
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 110/171 (64%), Gaps = 6/171 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ PD RL++ + + FD NL+++I +M ETMY A GIGLAA QV + K+LL+
Sbjct: 1 MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60
Query: 61 LDISKNNNQLQ------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D+ + + VFINP++ +EK++YNEGCLS+P + +++R I +
Sbjct: 61 IDLQQPEEGGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+G E EGLLA CLQHE+DHL G +FI++LS K+ ++KK LK K
Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERK 171
>gi|298290074|ref|YP_003692013.1| peptide deformylase [Starkeya novella DSM 506]
gi|296926585|gb|ADH87394.1| peptide deformylase [Starkeya novella DSM 506]
Length = 182
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 114/172 (66%), Gaps = 10/172 (5%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ P++ PD RL+ I++PI D ++ I+ +M ETMY A GIGLAA QV I ++++
Sbjct: 1 MSIRPLVIIPDSRLRLISDPIVRVDARVRAIVEDMFETMYDAPGIGLAAVQVGIPERIIT 60
Query: 61 LDISKNNNQLQ----------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRV 110
+D+ + + INP+II S+E +Y+EGCLS+P + ++R R++V
Sbjct: 61 VDVVRREEGEEEGAEEKKNPIALINPEIISSSEEISVYSEGCLSIPEYYADVERPARVKV 120
Query: 111 HALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+++ G+ EI A+GLLA C+QHEIDHLNG +FI+++S K++R++KKF K
Sbjct: 121 RYMDLNGETQEIDADGLLATCVQHEIDHLNGVLFIDHISKLKRDRVMKKFTK 172
>gi|323142780|ref|ZP_08077493.1| peptide deformylase [Succinatimonas hippei YIT 12066]
gi|322417425|gb|EFY08046.1| peptide deformylase [Succinatimonas hippei YIT 12066]
Length = 175
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 116/168 (69%), Gaps = 9/168 (5%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+ +PD RL++I P+TEFD LK++ +M ETMY GIGLAA Q+ I K++++
Sbjct: 1 MAIREIVTFPDERLRQICAPVTEFDAALKELTDDMFETMYDDEGIGLAAPQIGIEKRIVV 60
Query: 61 LDISKNN-----NQLQVFINPKIIWYSKEKQIYNE-GCLSLPGIFNKIKRSKRIRVHALN 114
+DI + + N+L V INPKI +KE ++ +E GCLS+P +IKR ++I + +
Sbjct: 61 IDIPEEDGKQGKNKL-VLINPKIT--AKEGEVASEEGCLSVPEYRAEIKRYEKITLECQD 117
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ G+ A+GLLAIC+QHE+DHL+GK+FI+YLS K++R++ K+ K
Sbjct: 118 LNGQKQIYEADGLLAICMQHELDHLDGKLFIDYLSRLKRDRLLTKYRK 165
>gi|429462985|ref|YP_007184448.1| peptide deformylase [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|429338499|gb|AFZ82922.1| peptide deformylase [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
Length = 152
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 102/146 (69%)
Query: 17 IAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINP 76
+A+ IT F+ + KI+ +M TMYH+ GIGLAA+QVDIHK+++++DIS+ N L V INP
Sbjct: 1 MADQITCFNEQIAKIVEDMAYTMYHSNGIGLAATQVDIHKRIIVIDISEERNNLMVLINP 60
Query: 77 KIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEI 136
+I+ +S K++ EGCLS+ + K++R I A + G I A GLL+ C+QHEI
Sbjct: 61 EIVTFSDTKELSEEGCLSVFDTYEKVQRFCSITCKAYDQYGVAKTIDAYGLLSRCIQHEI 120
Query: 137 DHLNGKIFIEYLSNFKKERIIKKFLK 162
DHLNG+IFI+YLS+ K++RI + K
Sbjct: 121 DHLNGRIFIDYLSSLKRDRISSRIKK 146
>gi|121602173|ref|YP_989567.1| peptide deformylase [Bartonella bacilliformis KC583]
gi|421761366|ref|ZP_16198169.1| peptide deformylase [Bartonella bacilliformis INS]
gi|158513863|sp|A1UUB4.1|DEF_BARBK RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|120614350|gb|ABM44951.1| peptide deformylase [Bartonella bacilliformis KC583]
gi|411173150|gb|EKS43198.1| peptide deformylase [Bartonella bacilliformis INS]
Length = 182
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 114/174 (65%), Gaps = 8/174 (4%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P++ PD L++I++P+ D ++++ +M ETMY+A GIGLAA QV I ++L+
Sbjct: 1 MPIKPLVILPDPILREISKPVEHIDSTIQQLADDMLETMYNAGGIGLAAIQVGIPLRMLV 60
Query: 61 LDISKNNNQLQ--------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHA 112
+D+S + + + INP+I+W S E+ I EGCLS+PG +++R KR+ +
Sbjct: 61 VDVSIFTSIFEPDAPQDPIIVINPEILWLSDERNICMEGCLSIPGYSAEVERPKRLCIRY 120
Query: 113 LNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
N EG+ EI A+ +LA CLQHEIDHLNG +FI++LS K+ +I+KF K K+
Sbjct: 121 RNREGEQKEIEADNILATCLQHEIDHLNGCLFIDHLSKVKRNMVIRKFEKRAKE 174
>gi|114568993|ref|YP_755673.1| peptide deformylase [Maricaulis maris MCS10]
gi|122316781|sp|Q0ASK2.1|DEF_MARMM RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|114339455|gb|ABI64735.1| peptide deformylase [Maricaulis maris MCS10]
Length = 174
Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 113/164 (68%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+ PD LK++++P+ + D +L++++ +M +TMY A GIGLAA QV + K++++
Sbjct: 1 MAIREILTVPDPILKEVSQPVDQVDDDLRELMDDMLQTMYAADGIGLAAIQVGVPKRVIV 60
Query: 61 LDISKNNNQL--QVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++ ++ + + F+NP + S + Y EGCLS+P ++++I+R RI + L+ +G
Sbjct: 61 MDLAGSDEEAKPRYFVNPVLSDPSDTLKPYEEGCLSVPTVYDEIERPDRIHIQYLDYDGN 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E IAEG+ A+C+QHE+DHL G +FI+YLS K++R ++K K
Sbjct: 121 ECEEIAEGMFAVCIQHEMDHLEGVLFIDYLSRLKRQRAVQKVKK 164
>gi|357383128|ref|YP_004897852.1| peptide deformylase [Pelagibacterium halotolerans B2]
gi|351591765|gb|AEQ50102.1| peptide deformylase [Pelagibacterium halotolerans B2]
Length = 171
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I+ PD L+K+AEP+ FD +L+K + +M ETMY A GIGLA Q+ K++++
Sbjct: 1 MAVREILILPDPLLRKVAEPVEAFDEDLQKTVDDMFETMYDAPGIGLAGPQIGYMKRVVV 60
Query: 61 LDISKNNNQLQ---VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+D++ N +NP+I+ S+E + EGCLS+P ++ +++R + V EG
Sbjct: 61 IDLADEENPDSGKIAMVNPEIVGLSEETAVSEEGCLSIPELYYEVERPAEVTVKYFTPEG 120
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
K A G LA+C+QHEIDHL+G ++I+YLS K++R+ KKF K +
Sbjct: 121 KEVTRHATGRLAVCMQHEIDHLDGVLYIDYLSRLKRDRVNKKFQKKAR 168
>gi|319403561|emb|CBI77143.1| polypeptide deformylase [Bartonella rochalimae ATCC BAA-1498]
Length = 176
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++ ++ PD L+++++ + D ++K+ +M ETMY+A GIGLAA QV + ++L+
Sbjct: 1 MSIKSLVILPDPILREVSKLVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60
Query: 61 LDISKNN---NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+DI + N L V INP+I+W S E+ +Y EGCLS+P F +++R K +R+ + EG
Sbjct: 61 VDIHSKDAPKNPL-VIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLRMCYRDREG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
K EI A LLA CLQHEIDHLNG +FI+++S K++ +I+KF K K
Sbjct: 120 KQVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAK 167
>gi|220915878|ref|YP_002491182.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953732|gb|ACL64116.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 185
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 108/162 (66%), Gaps = 4/162 (2%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS- 64
I+ +PD LK++A P+ D +++++ +M ETMY A G+GLAA Q+ + K+++++D S
Sbjct: 5 IVIWPDPILKEVAHPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVIDTSP 64
Query: 65 -KNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEII 123
+ L +NP+I+ E Y EGCLS+PG + R R+ V AL+ GK FE+
Sbjct: 65 RQEGQTLIHLVNPEIVRGEGE-LTYTEGCLSIPGEAEDVDRFARVWVRALDYHGKPFELE 123
Query: 124 AEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
AEGLLA+ LQHE DHLNG +F+++LS+ K+E +I+K +K +K
Sbjct: 124 AEGLLAVALQHETDHLNGTVFVDHLSSLKRE-LIRKRMKKLK 164
>gi|86747799|ref|YP_484295.1| peptide deformylase [Rhodopseudomonas palustris HaA2]
gi|123099181|sp|Q2J2C6.1|DEF_RHOP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|86570827|gb|ABD05384.1| peptide deformylase [Rhodopseudomonas palustris HaA2]
Length = 175
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 111/170 (65%), Gaps = 4/170 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L II PD RL++I++P+ E ++K+ +M E+MY A GIGLAA Q+ +L+
Sbjct: 1 MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60
Query: 61 LDISK----NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIE 116
+DI + + + FINP+I+ S E +Y EGCLS+P + +++R K +R+ +++
Sbjct: 61 MDIVRKEGNGKSDPRAFINPEIVGASAELNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120
Query: 117 GKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
G++ E A+GL A C+QHEIDHLNG +F++++S KK +++KF K K+
Sbjct: 121 GQVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKKAMVVRKFEKAAKR 170
>gi|162452083|ref|YP_001614450.1| polypeptide deformylase [Sorangium cellulosum So ce56]
gi|161162665|emb|CAN93970.1| Polypeptide deformylase [Sorangium cellulosum So ce56]
Length = 170
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 112/165 (67%), Gaps = 6/165 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I++YPD RL++ A+P+ E + K+I +M ETMY A G+GLAA+Q+ ++ +
Sbjct: 1 MAIRTILHYPDPRLRQKAQPVGEISPEITKLIDDMAETMYAAPGVGLAATQIGEPHRVFL 60
Query: 61 LDISKNN--NQLQVFINPKIIWYSKEKQIYN-EGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+DI+ ++ + L VFINP+I+ +E Q+ EGCLS PGI IKR++R+ V A +G
Sbjct: 61 VDIAADDEPSNLLVFINPEIVR--QEGQLTGPEGCLSFPGISEDIKRAERVTVRARGRDG 118
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
FEI A+GLLA+ +QHE+DHL+G + I+ + KK RI+++ ++
Sbjct: 119 ATFEIAADGLLAVAIQHELDHLDGVLMIDRMGTLKK-RIVQRKMQ 162
>gi|149910328|ref|ZP_01898971.1| peptide deformylase [Moritella sp. PE36]
gi|149806576|gb|EDM66544.1| peptide deformylase [Moritella sp. PE36]
Length = 167
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 107/162 (66%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++++PD RLKKIA+P+ E + II +M ETMY GIGLAA QV+I +++++
Sbjct: 1 MAILEVLHFPDDRLKKIAQPVQEITPATQIIIDDMLETMYAEEGIGLAAVQVNILQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S + + INP + E I EGCLS+P + R++ + V AL+ +G F
Sbjct: 61 IDVSGTRGEPLILINPVLTNKCGETGI-EEGCLSVPESRAFVPRAESVTVTALDRDGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A LLAICLQHE+DHLNGK+FI+YLS K++RI KK K
Sbjct: 120 TLEAHDLLAICLQHEVDHLNGKLFIDYLSPLKQQRIRKKLEK 161
>gi|424890293|ref|ZP_18313892.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393172511|gb|EJC72556.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 164
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 108/162 (66%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + PI+ YP LK + P+T FD +L ++ ++ TM A G+G+ A+ + + ++ +
Sbjct: 1 MPIRPILRYPHPGLKTVCTPVTVFDSSLAELADDLLATMRAAPGVGITAAHIGVFSRVTV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
L++ K++ L++++NP+IIW+SKE + EG +S+PG +++ R + IR + EG M
Sbjct: 61 LELDKSDG-LRLYVNPEIIWFSKETMTHAEGSVSMPGATDEVTRPRSIRFRYQDAEGSMH 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E +A+G LAIC+QHE+D L+G +++ LS K++R++KK+ K
Sbjct: 120 EDVADGFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161
>gi|359409470|ref|ZP_09201938.1| peptide deformylase [SAR116 cluster alpha proteobacterium HIMB100]
gi|356676223|gb|EHI48576.1| peptide deformylase [SAR116 cluster alpha proteobacterium HIMB100]
Length = 168
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LP++ P L+++AEP+ E + + +M +TMY A GIGLAA+QV I K++++
Sbjct: 1 MAILPLVLVPRPVLRQVAEPVDEITDEILTLADDMADTMYDAPGIGLAANQVGILKRVIV 60
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D ++ + L NP+IIW S E EGCLS+PG ++KR + V L+ +G
Sbjct: 61 MDCAREDEVPALWKMFNPEIIWRSDETAKMEEGCLSIPGHNAEVKRPAEVHVAYLDSDGV 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A GLLA C+QHEIDHLNG +FI++LS K++ I +K +K+ +
Sbjct: 121 KQEMQATGLLAACVQHEIDHLNGVLFIDHLSRLKRDMIWRKVMKDSR 167
>gi|84685501|ref|ZP_01013399.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654]
gi|84666658|gb|EAQ13130.1| peptide deformylase [Rhodobacterales bacterium HTCC2654]
Length = 173
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 104/165 (63%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L PI+ +PD RLKK AE + + L + +M ETMY A GIGLAA QV + ++L++
Sbjct: 1 MALKPILIHPDPRLKKEAEKVRDVTDELLTLADDMLETMYDAPGIGLAAPQVGVLQRLIV 60
Query: 61 LDISKNNN---QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
LD K+ + Q V NP++I S + +Y EGCLS+P + ++ R ++V LN G
Sbjct: 61 LDCIKDESAEPQPLVMFNPEVILSSDDTNVYEEGCLSIPDQYAEVTRPAAVKVRWLNRAG 120
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ E EGL A C+QHEIDHLNGK+FI+YLS K++ I +K K
Sbjct: 121 EEQERDFEGLWATCVQHEIDHLNGKLFIDYLSPMKRQMITRKSQK 165
>gi|306840629|ref|ZP_07473381.1| peptide deformylase [Brucella sp. BO2]
gi|306289367|gb|EFM60603.1| peptide deformylase [Brucella sp. BO2]
Length = 164
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ I+ YPD RL+ AEP+T FD +L+K+ ++ +TM A GIG+ A + I K++++
Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
L++ + + +INP+I+W +EK + EG +S+PG+ ++++R RIR+ +++G
Sbjct: 61 LELDRTTGP-KTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGNEQ 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
++GLLA+C QHEID L+G +++ LS K+ER+IK++ K
Sbjct: 120 TEESDGLLAVCHQHEIDQLDGIFWVQRLSRLKRERLIKRYEK 161
>gi|304320578|ref|YP_003854221.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
gi|303299480|gb|ADM09079.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
Length = 170
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 106/165 (64%), Gaps = 2/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ PI+ PD RL++I+ P+ D L+ ++ +M ETMY A GIGLAA Q+ + K++++
Sbjct: 1 MTIRPIVTAPDPRLREISTPVDGVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60
Query: 61 LDISKNNNQL--QVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D++ + F+NP I + + Y EGCLS+P + +I+R V L+ +G
Sbjct: 61 MDLAGEGEPPAPRYFVNPVIRNPATDLAPYQEGCLSVPDYYEEIERPATCTVDYLDYDGT 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
+ AEGLLA C+QHE+DHL G +FI++LS K+ERI+KK ++
Sbjct: 121 PRTLEAEGLLATCIQHEMDHLEGVLFIDHLSRLKRERILKKLKRD 165
>gi|71892002|ref|YP_277732.1| peptide deformylase [Candidatus Blochmannia pennsylvanicus str.
BPEN]
gi|123761479|sp|Q493I1.1|DEF_BLOPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|71796108|gb|AAZ40859.1| polypeptide deformylase [Candidatus Blochmannia pennsylvanicus str.
BPEN]
Length = 173
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 107/151 (70%), Gaps = 5/151 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+YYPD RL+ IA+P+ + +II +M +TMY GIGLAA+QV+IH+Q+++
Sbjct: 1 MSILEILYYPDKRLRTIADPVVAVSDDTNQIINDMFDTMYFKKGIGLAATQVNIHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYN--EGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+ K N Q VFINP I +K+ I + E CLS+P I+ + RS++I + +L+ G
Sbjct: 61 IDLYKKNKQRLVFINPSI---TKKTGIISIPESCLSIPQIYEIVPRSEKITIQSLDQYGN 117
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
FE+ A LLAIC+QHE+DHL GK+FI++LS
Sbjct: 118 KFEMEANNLLAICIQHEVDHLFGKLFIDHLS 148
>gi|92119150|ref|YP_578879.1| peptide deformylase [Nitrobacter hamburgensis X14]
gi|122990031|sp|Q1QH78.1|DEF_NITHX RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|91802044|gb|ABE64419.1| peptide deformylase [Nitrobacter hamburgensis X14]
Length = 175
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 111/171 (64%), Gaps = 6/171 (3%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + II PD +L+ ++ PI ++K+ +M ETMY A GIGLA Q+ +++
Sbjct: 1 MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60
Query: 61 LDISKNNNQ------LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
+D+++ + + ++FINP+I+ S+E Y EGCLS+P + +++R R+RV +
Sbjct: 61 MDLARRDEEGELTPRPRIFINPEILSASEELSTYEEGCLSIPEYYEEVERPARVRVRFTD 120
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
++GK+ E AEG+ A C+QHEIDHLNG +F++++S K++R++KKF K K
Sbjct: 121 LDGKVHEEDAEGIYATCIQHEIDHLNGVLFVDHISKLKRDRVVKKFTKAAK 171
>gi|440509796|ref|YP_007347232.1| peptide deformylase [Candidatus Blochmannia chromaiodes str. 640]
gi|440454009|gb|AGC03501.1| peptide deformylase [Candidatus Blochmannia chromaiodes str. 640]
Length = 173
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+YYPD RL+ IA+P+ + +II +M +TMY GIGLAA+QV+IH+Q+++
Sbjct: 1 MSILEILYYPDKRLRTIADPVVAVSDDTNQIINDMFDTMYFKKGIGLAATQVNIHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ K N Q VFINP I + I E CLS+P I+ + RS++I + +L+ G F
Sbjct: 61 IDLYKKNKQRLVFINPSITKKTGVISI-PESCLSIPQIYEIVPRSEKITIQSLDQYGNKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
E+ A LLAIC+QHE+DHL GK+FI++LS
Sbjct: 120 EMEANNLLAICIQHEVDHLFGKLFIDHLS 148
>gi|83594679|ref|YP_428431.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
gi|386351444|ref|YP_006049692.1| peptide deformylase [Rhodospirillum rubrum F11]
gi|83577593|gb|ABC24144.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
gi|346719880|gb|AEO49895.1| peptide deformylase [Rhodospirillum rubrum F11]
Length = 172
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 114/164 (69%), Gaps = 2/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ PD RL K A P+ D++++K++ +M ETMY A GIGLAA QV + K++++
Sbjct: 1 MALLPILTAPDPRLTKKALPVETVDVSIRKLMDDMLETMYLAPGIGLAAPQVGVLKRVIV 60
Query: 61 LDISKNNNQLQV--FINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD ++ + + NP+IIW S++ + Y EGCLS+P ++ + R R+RV L+ + +
Sbjct: 61 LDPAREDEAPRPMRLANPEIIWSSEDTKPYEEGCLSVPEQYDTVVRPDRVRVRYLDPDNE 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ EI A+GLLA+ LQHEIDHL+G +F++YLS+ K+ +++K K
Sbjct: 121 IREIDADGLLAVILQHEIDHLDGILFVDYLSSLKRNMMLRKLRK 164
>gi|114800420|ref|YP_759242.1| peptide deformylase [Hyphomonas neptunium ATCC 15444]
gi|123028362|sp|Q0C4V1.1|DEF_HYPNA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|114740594|gb|ABI78719.1| peptide deformylase [Hyphomonas neptunium ATCC 15444]
Length = 176
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 112/165 (67%), Gaps = 3/165 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITE-FDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLL 59
M + I+ PD RLK++++P+ +++ ++ +M ETMY A GIGLAA Q+ + +++
Sbjct: 1 MAIREILTVPDPRLKQVSKPVEGGVTDDIRALMDDMLETMYDAPGIGLAAIQIGVPLRVI 60
Query: 60 ILDISKNNNQL--QVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
++D+++ + + F+NP+I+ +EK+ Y EGCLS+P IF++++RS R R+ L+ +G
Sbjct: 61 VMDLAREGEEPAPRYFVNPEILETIEEKKPYEEGCLSVPDIFDQVERSARCRIRYLDYDG 120
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
K + AE L A+C+QHE+DHL G +FI+YLS K++R I K K
Sbjct: 121 KQVDEWAEDLYAVCIQHEMDHLEGTLFIDYLSRLKRDRAIDKVKK 165
>gi|404491798|ref|YP_006715904.1| polypeptide formylmethionine deformylase [Pelobacter carbinolicus
DSM 2380]
gi|77543944|gb|ABA87506.1| polypeptide formylmethionine deformylase [Pelobacter carbinolicus
DSM 2380]
Length = 171
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 2/163 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI +YPD LK +EPI +K + +M ETMY A G+GLAA QV I+K+L++
Sbjct: 1 MAILPIRHYPDPVLKNKSEPILTITEEIKTLAADMAETMYAAPGVGLAAPQVGINKKLVV 60
Query: 61 LDIS-KNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+D + K N +L V INP+II + EGCLS+PG + +IKR+ ++V N+EG+
Sbjct: 61 MDCAPKENPELIVAINPEIIEREGDS-FEEEGCLSVPGYYCRIKRNSHVKVRYQNLEGQT 119
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A GLLAI QHEIDHL+G +F+++LS+ KK KK+ K
Sbjct: 120 VEREATGLLAIAFQHEIDHLHGLLFVDHLSSLKKNMFRKKYQK 162
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.143 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,479,505,771
Number of Sequences: 23463169
Number of extensions: 94180291
Number of successful extensions: 300555
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5079
Number of HSP's successfully gapped in prelim test: 628
Number of HSP's that attempted gapping in prelim test: 290175
Number of HSP's gapped (non-prelim): 5750
length of query: 166
length of database: 8,064,228,071
effective HSP length: 127
effective length of query: 39
effective length of database: 9,379,372,904
effective search space: 365795543256
effective search space used: 365795543256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 71 (32.0 bits)