BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2880
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1XSN2|DEF_POLNS Peptide deformylase OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=def PE=3 SV=1
Length = 171
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ YPD RL K+A+P+ + D +KKI+ +M +TMY A G+GLAA+QVDIH+++++
Sbjct: 1 MALLTVLCYPDSRLHKVAKPVAQVDARIKKIVADMADTMYEAPGVGLAATQVDIHERIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S N+L VFINP+I+W S E + + EGCLS+P +++++R IRV AL+I+GK F
Sbjct: 61 IDVSDEQNELMVFINPEIVWTSSETKSWREGCLSVPEFYDEVERPAEIRVKALDIDGKEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+G LA+CLQHE+DHL GK+F+EYLS FK+ RI +K K K+
Sbjct: 121 EIEADGSLAVCLQHELDHLQGKVFVEYLSIFKRTRISQKMKKRAKE 166
>sp|Q7VS88|DEF2_BORPE Peptide deformylase 2 OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=def2 PE=3 SV=1
Length = 170
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K A+P+ D +++++ +M +TMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N L+V INP+I W S E+Q Y EGCLS+PGI+++++R+ RIR AL+ +G+ +
Sbjct: 61 IDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLLA+C+QHEIDHL+GK+F+EYLSN K+ RI K K
Sbjct: 121 EFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKK 162
>sp|Q7W1V3|DEF1_BORPA Peptide deformylase 1 OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=def1 PE=3 SV=1
Length = 170
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K A+P+ D +++++ +M +TMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N L+V INP+I W S E+Q Y EGCLS+PGI+++++R+ RIR AL+ +G+ +
Sbjct: 61 IDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLLA+C+QHEIDHL+GK+F+EYLSN K+ RI K K
Sbjct: 121 EFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKK 162
>sp|Q7WQS9|DEF1_BORBR Peptide deformylase 1 OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=def1 PE=3 SV=1
Length = 170
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K A+P+ D +++++ +M +TMY A G+GLAA+QVD+H+++++
Sbjct: 1 MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ N L+V INP+I W S E+Q Y EGCLS+PGI+++++R+ RIR AL+ +G+ +
Sbjct: 61 IDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+GLLA+C+QHEIDHL+GK+F+EYLSN K+ RI K K
Sbjct: 121 EFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKK 162
>sp|Q8Y3B0|DEF1_RALSO Peptide deformylase 1 OS=Ralstonia solanacearum (strain GMI1000)
GN=def1 PE=3 SV=1
Length = 169
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 126/156 (80%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL K+A+P+ D ++K++ +M ETMY A GIGLAA+QVD+H++++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++L+VFINP+I+W S+ +++++EGCLS+P I++K++R R+RV ALN +G+ F
Sbjct: 61 IDVSESRDELRVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156
E+ +GLLA+C+QHE+DHL GK+F+EYLS K+ RI
Sbjct: 121 ELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRI 156
>sp|B0VNL8|DEF_ACIBS Peptide deformylase OS=Acinetobacter baumannii (strain SDF) GN=def
PE=3 SV=1
Length = 176
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 128/166 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ E ++++ +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINPK+ ++E Q Y EGCLS+P I++K+ R R+++ A+N+EG+ F
Sbjct: 61 MDLSESKDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+GLLA+C+QHE+DHLNGK+F++YLS K++R+ +K K +++
Sbjct: 121 EIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRVREKVEKIVRQ 166
>sp|A5WBG1|DEF_PSYWF Peptide deformylase OS=Psychrobacter sp. (strain PRwf-1) GN=def
PE=3 SV=1
Length = 176
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 126/169 (74%), Gaps = 3/169 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +LPI+ YPD RL+ IAEPI D +K++I +M ETMY A GIGLAA+QVD H QL++
Sbjct: 1 MAILPILSYPDPRLRTIAEPIKTVDAEIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+NN+ +VFINPK+ ++K+ Y EGCLS+P +++ + R ++++ AL+ +G F
Sbjct: 61 MDLSENNDSPRVFINPKVTPLVEDKKPYEEGCLSVPDVYDSVDRPVKVKIEALDADGNAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI---IKKFLKNIKK 166
E IAEGLLA+C+QHE+DHLNG +F++YLS K+ R +KK+LK +K
Sbjct: 121 EEIAEGLLAVCIQHEMDHLNGVLFVDYLSRLKQTRARDKVKKYLKTREK 169
>sp|C1DFV8|DEF_AZOVD Peptide deformylase OS=Azotobacter vinelandii (strain DJ / ATCC
BAA-1303) GN=def PE=3 SV=1
Length = 168
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 127/166 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+PI D ++++I +M ETMY A GIGLAA+QV++HK+L++
Sbjct: 1 MAILTILEFPDPRLRTIAKPIETVDDGIRRLIDDMFETMYAAPGIGLAATQVNVHKRLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+ +VFINP+ ++E + Y EGCLS+PG + + R +++R+ AL+ +G+ F
Sbjct: 61 MDLSEDKNEPRVFINPEFEALTEELEPYQEGCLSVPGFYENVDRPQKVRIRALDRDGQPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E++AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
>sp|Q88RR1|DEF1_PSEPK Peptide deformylase 1 OS=Pseudomonas putida (strain KT2440) GN=def1
PE=3 SV=1
Length = 168
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+TEFD L+++I +M ETMY A GIGLAA+QV++HKQ+++
Sbjct: 1 MAILNILEFPDPRLRTLAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP + + + Y EGCLS+PG + + R R+RV A + +GK F
Sbjct: 61 MDLSEDRSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ EGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 ELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQ 166
>sp|Q7NQ75|DEF_CHRVO Peptide deformylase OS=Chromobacterium violaceum (strain ATCC 12472
/ DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC
9757) GN=def PE=3 SV=1
Length = 167
Score = 186 bits (472), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 125/166 (75%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I++YPD RL +A+P+ FD L++ I +M ETMY A GIGLAA+QVD H++L++
Sbjct: 1 MALLNILHYPDERLHTVAKPVEVFDAALQQQIDDMFETMYEAKGIGLAATQVDYHRRLVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ ++ +VFINP+I+ E +Y EGCLS+PGI++K+ R++R++V A + +GK F
Sbjct: 61 MDISEERDERRVFINPEIVEKDGET-VYEEGCLSVPGIYDKVTRAERVKVKAQDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A+GLLAIC+QHE+DHLNG +F+E LS K++RI K K K+
Sbjct: 120 ELEADGLLAICIQHELDHLNGVVFVERLSQMKQQRIKTKLKKREKQ 165
>sp|Q0VTE1|DEF_ALCBS Peptide deformylase OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=def PE=3 SV=1
Length = 168
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M L I+ +PD RL+ +A+P+ + D L+K+I +M ETMY A GIGLAA+QVD+H QL++
Sbjct: 1 MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMFETMYAAPGIGLAATQVDVHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+++N+ VFINP+I ++E+ Y EGCLS+PG + K+ R R+R++AL+ +G F
Sbjct: 61 MDLSEDHNKPMVFINPQITPLTEEQAPYEEGCLSVPGFYEKVTRPARVRINALDRDGNAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLA C+QHE+DHL+GK+F++Y+S K++RI KK K
Sbjct: 121 EVEADELLATCIQHEMDHLDGKLFVDYVSRLKRDRIKKKLEK 162
>sp|Q1QET1|DEF_PSYCK Peptide deformylase OS=Psychrobacter cryohalolentis (strain K5)
GN=def PE=3 SV=1
Length = 184
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 117/165 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL+ IA P+ E +K +I +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSYPDPRLRTIATPVKEVTAEIKTLITDMIETMYDAQGIGLAASQVDHHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINPK+ +EKQ Y EGCLS+P +++K++R ++R+ AL+ G
Sbjct: 61 MDLSEDKDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEALDENGNKI 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ EGLLA+C+QHE+DHLNG IF++YLS K+ R K K +K
Sbjct: 121 DEEVEGLLAVCIQHEMDHLNGVIFVDYLSRLKQTRARDKVRKVLK 165
>sp|Q88B43|DEF1_PSESM Peptide deformylase 1 OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=def1 PE=3 SV=1
Length = 168
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 124/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ +A+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDSRLRTLAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + VFINP+I + E Y EGCLS+PG + + R +++RV AL+ +GK +
Sbjct: 61 MDLSEDRSAPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E++AEGLLAIC+QHE DHLNGK+F++YLSN K++RI KK K K
Sbjct: 121 ELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 165
>sp|Q21PV5|DEF_SACD2 Peptide deformylase OS=Saccharophagus degradans (strain 2-40 / ATCC
43961 / DSM 17024) GN=def PE=3 SV=1
Length = 172
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 121/166 (72%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ IA+P+ + D ++ +I +M ETMY A GIGLAA+QV++H+Q+L+
Sbjct: 1 MALLPILEFPDPRLRTIAKPVAKVDQRIRTLIDDMFETMYDAPGIGLAATQVNVHEQVLV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + + VFINP I +E Y EGCLS+PG + ++ R K IRV AL+ +GK F
Sbjct: 61 IDLGEETKEPMVFINPSIEILDQEHYEYEEGCLSVPGFYEQVSRPKHIRVTALDRDGKEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
I EGLLA+C+QHE+DHLNGK+F++Y+SN K++RI KK K ++
Sbjct: 121 VIEPEGLLAVCVQHEMDHLNGKLFVDYVSNIKRQRIRKKLEKQHRQ 166
>sp|Q4FVQ4|DEF_PSYA2 Peptide deformylase OS=Psychrobacter arcticus (strain DSM 17307 /
273-4) GN=def PE=3 SV=1
Length = 184
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 117/165 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ YPD RL+ IA P+ E +K +I +M ETMY A GIGLAASQVD H QL++
Sbjct: 1 MALLPILSYPDPRLRMIATPVKEVTAEIKTLITDMIETMYDAEGIGLAASQVDHHIQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ + +VFINPK+ +EKQ Y EGCLS+P +++K++R ++R+ A++ G
Sbjct: 61 MDLSEDKDSPRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEAIDQNGNAI 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ EGLLA+C+QHEIDHLNG IF++YLS K+ R K K +K
Sbjct: 121 DEEVEGLLAVCIQHEIDHLNGVIFVDYLSRLKQTRARDKVRKVLK 165
>sp|B3PGY7|DEF_CELJU Peptide deformylase OS=Cellvibrio japonicus (strain Ueda107) GN=def
PE=3 SV=1
Length = 169
Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 124/165 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ +A+P+T+ D ++++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MALLPILEFPDPRLRTVAKPVTQVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q VFINP+I +E Y+EGCLS+PG + ++R IRV AL+ G F
Sbjct: 61 IDVSEDKSQPLVFINPEIEVLDEELSQYDEGCLSVPGFYETVERPGHIRVKALDRAGNAF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLA+C+QHE+DHLNGK+F++++S FK+ RI K K K
Sbjct: 121 ELQPQGLLAVCIQHELDHLNGKLFVDHISPFKRSRIRSKLEKKHK 165
>sp|C5BKQ0|DEF_TERTT Peptide deformylase OS=Teredinibacter turnerae (strain ATCC 39867 /
T7901) GN=def PE=3 SV=1
Length = 168
Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LLPI+ +PD RL+ +A+P+ + D ++ II +M ETMY A GIGLAA+QV++H+Q+++
Sbjct: 1 MALLPILEFPDARLRTVAKPVEQVDERVRAIIDDMFETMYDAPGIGLAATQVNVHEQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N+++ VFINP+I + Y EGCLS+PG + ++ R + +RV ALN +G+ F
Sbjct: 61 IDISENHDEPLVFINPRIDVLDETLFDYEEGCLSVPGFYEEVTRPRHVRVTALNRDGEEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ EGLLA+C+QHEIDHL GK+F++Y+SN K++RI KK K K+
Sbjct: 121 VLEPEGLLAVCIQHEIDHLKGKLFVDYVSNIKRQRIRKKLEKQHKE 166
>sp|A4XNB3|DEF_PSEMY Peptide deformylase OS=Pseudomonas mendocina (strain ymp) GN=def
PE=3 SV=1
Length = 168
Score = 182 bits (463), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 125/162 (77%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + E Y EGCLS+PG + + R +++++ AL+ +G+ F
Sbjct: 61 MDLSEDKSEPRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLSN K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEK 162
>sp|Q82TC8|DEF2_NITEU Peptide deformylase 2 OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=def2 PE=3 SV=1
Length = 185
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 119/166 (71%), Gaps = 1/166 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ YPD RL KIA + ++ ++ NM ETMY A GIGLAA+QVD+H+++++
Sbjct: 18 MAILNILRYPDERLHKIATEVPSITREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIV 77
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+ ++L V INP+II S + EGCLS+PGIF+K+ R++ + V A I+GK F
Sbjct: 78 IDVSETRDELLVLINPEIIASSGNAE-TQEGCLSVPGIFDKVTRAEEVTVRATGIDGKSF 136
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E+ A GLLA+C+QHE+DHL GK+F+EYLS FK+ RI+ K K ++
Sbjct: 137 EMDASGLLAVCIQHEMDHLMGKVFVEYLSPFKQSRILSKLKKQARR 182
>sp|A4VFH8|DEF_PSEU5 Peptide deformylase OS=Pseudomonas stutzeri (strain A1501) GN=def
PE=3 SV=1
Length = 168
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 124/162 (76%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D +++++ +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ + + Y EGCLS+PG + + R +++R+ AL+ +GK +
Sbjct: 61 MDLSEDRSEPRVFINPEFEPLTDQMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+IAEGLLA+C+QHE DHLNGK+F++YLS+ K++RI KK K
Sbjct: 121 ELIAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEK 162
>sp|Q9I7A8|DEF_PSEAE Peptide deformylase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=def PE=1 SV=1
Length = 168
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 124/166 (74%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK++++
Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ +VFINP+ +++ Y EGCLS+PG + + R +++R+ AL+ +G F
Sbjct: 61 MDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
E +AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
>sp|Q5QXI5|DEF_IDILO Peptide deformylase OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=def PE=3 SV=1
Length = 174
Score = 175 bits (444), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 117/164 (71%), Gaps = 3/164 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + ++ YPD RL+K+A+ I + D N++ +I +M ETMY G+GLAA+QVD+H++L +
Sbjct: 1 MAKMTVLQYPDERLRKVAQKIEKVDDNIRSVIDDMFETMYEEQGVGLAATQVDVHRRLFV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYN-EGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
D S++ N+ VFINP+I E N EGCLS PG++ K++R++RI V AL+ G+
Sbjct: 61 SDCSEDQNEPLVFINPEIT--EAEGHFKNDEGCLSFPGVYAKVERAERITVTALDKNGER 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
F AEGLLAIC+QHEIDHL+GK+F++YLS K+ERI KK K
Sbjct: 119 FSRSAEGLLAICIQHEIDHLDGKLFVDYLSPLKRERIRKKLEKE 162
>sp|A1KRE5|DEF_NEIMF Peptide deformylase OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=def PE=3
SV=1
Length = 167
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K+I +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>sp|P63916|DEF_NEIMB Peptide deformylase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=def PE=3 SV=1
Length = 167
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K+I +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>sp|P63915|DEF_NEIMA Peptide deformylase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=def PE=3 SV=1
Length = 167
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K+I +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>sp|A9M464|DEF_NEIM0 Peptide deformylase OS=Neisseria meningitidis serogroup C (strain
053442) GN=def PE=3 SV=1
Length = 167
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K+I +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>sp|Q5F5P6|DEF_NEIG1 Peptide deformylase OS=Neisseria gonorrhoeae (strain ATCC 700825 /
FA 1090) GN=def PE=3 SV=1
Length = 167
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL I+ YPD RL +A+P+ + D ++K++ +M ETMY + GIGLAA+QVD+H+++++
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D++++ ++ +VFINP I+ E Y EGCLS+PGI++ + R++R++V ALN +G+ F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGET-TYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL G +F+E LS K+ RI K K K
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>sp|Q2SQX1|DEF_HAHCH Peptide deformylase OS=Hahella chejuensis (strain KCTC 2396) GN=def
PE=3 SV=1
Length = 168
Score = 173 bits (438), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 117/165 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+ L I+ +PD RL+ +A+P+ FD L ++I +M ETMY A GIGLAA+QVD+HK++++
Sbjct: 1 MSKLQILEFPDPRLRTVAKPVQTFDAALGQLIDDMFETMYEAPGIGLAATQVDVHKRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ ++ VFINP I + + EGCLS+PG + + R +++ A + G+ +
Sbjct: 61 IDVSEDKSEPMVFINPDIEVLDGDPEEMQEGCLSVPGFYESVTRIPHVKIRAQDRNGESY 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A GLLA+CLQHE+DHLNGK++++YLSN K+ RI KK K K
Sbjct: 121 EMEARGLLAVCLQHEVDHLNGKLYVDYLSNVKRTRIRKKLEKQHK 165
>sp|Q6G5F0|DEF_BARHE Peptide deformylase OS=Bartonella henselae (strain ATCC 49882 /
Houston 1) GN=def PE=3 SV=1
Length = 176
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 119/168 (70%), Gaps = 2/168 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + P++ PD L++I++P+ D ++K+ +M ETMYHA G+GLAA Q+ I ++L+
Sbjct: 1 MPMRPLVIVPDPILREISKPVEYIDSAVQKLADDMLETMYHAQGVGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD+S+N+ Q V INP+++W S E+ IY EGCLS+P F +++R KR+ V N EGK
Sbjct: 61 LDVSRNDEQKNPLVIINPEVLWLSDERNIYKEGCLSIPEYFAEVERPKRLCVRYQNREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
EI A+ LLA CLQHEIDHLNG++FI+YLS K++ +I+KF K K+
Sbjct: 121 QTEIEADDLLATCLQHEIDHLNGRLFIDYLSKIKRDMVIRKFKKRAKE 168
>sp|Q8P4F9|DEF2_XANCP Peptide deformylase 2 OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=def2 PE=3
SV=1
Length = 170
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 116/165 (70%), Gaps = 4/165 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDI---NLKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M +TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++D+S+ + QVFINP+I+ E Q+Y EGCLS+PGIF + R+ I V L+ +G
Sbjct: 61 FMVIDVSEEKDAPQVFINPEIVTRQGE-QVYQEGCLSVPGIFADVSRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ E+ +GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K
Sbjct: 120 QPQELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAK 164
>sp|Q92SH6|DEF_RHIME Peptide deformylase OS=Rhizobium meliloti (strain 1021) GN=def PE=3
SV=2
Length = 174
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 117/167 (70%), Gaps = 2/167 (1%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ P+I PD L++++ P+ D +++++ +M ETMY A GIGLAA Q+ + K+LL+
Sbjct: 1 MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60
Query: 61 LDISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
LD++K + Q VFINPK++ S+E+ +Y EGCLS+P + +++R I V ++ EGK
Sbjct: 61 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ AEGLLA CLQHEIDHLNG +FI+Y+S K++ +I++F K K
Sbjct: 121 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAK 167
>sp|B1JJH8|DEF_YERPY Peptide deformylase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=def PE=3 SV=1
Length = 170
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H+Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAK 164
>sp|Q664V4|DEF_YERPS Peptide deformylase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=def PE=3 SV=1
Length = 170
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H+Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAK 164
>sp|A4TH23|DEF_YERPP Peptide deformylase OS=Yersinia pestis (strain Pestoides F) GN=def
PE=3 SV=1
Length = 170
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H+Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAK 164
>sp|Q1CCX6|DEF_YERPN Peptide deformylase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=def PE=3 SV=1
Length = 170
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H+Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAK 164
>sp|A9R927|DEF_YERPG Peptide deformylase OS=Yersinia pestis bv. Antiqua (strain Angola)
GN=def PE=3 SV=1
Length = 170
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H+Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAK 164
>sp|Q8ZJ79|DEF_YERPE Peptide deformylase OS=Yersinia pestis GN=def PE=3 SV=1
Length = 170
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H+Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAK 164
>sp|B2K504|DEF_YERPB Peptide deformylase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=def PE=3 SV=1
Length = 170
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H+Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAK 164
>sp|Q1C2X9|DEF_YERPA Peptide deformylase OS=Yersinia pestis bv. Antiqua (strain Antiqua)
GN=def PE=3 SV=1
Length = 170
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H+Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAK 164
>sp|A7FNK2|DEF_YERP3 Peptide deformylase OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=def PE=3 SV=1
Length = 170
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H+Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ +GLLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAK 164
>sp|A9ILK4|DEF_BART1 Peptide deformylase OS=Bartonella tribocorum (strain CIP 105476 /
IBS 506) GN=def PE=3 SV=1
Length = 178
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 118/170 (69%), Gaps = 4/170 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + ++ PD L+++++P+ + D L+++ +M ETMYHA GIGLAA Q+ I ++L+
Sbjct: 1 MPMRSLVTLPDPILREVSKPVEQVDTALQELADDMLETMYHAKGIGLAAIQIGIPLRMLV 60
Query: 61 LDISKNNNQLQ----VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIE 116
+D+S N Q V INP+I+W S E+ +Y EGCLS+P F +++R KR+RV N E
Sbjct: 61 IDVSGNAEDTQKKPLVIINPEILWLSDERNVYKEGCLSIPDYFAEVERPKRLRVRYQNRE 120
Query: 117 GKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
GK EI A+ LLA CLQHEIDHL+G++FI+Y+S K++ +I+KF K K+
Sbjct: 121 GKQKEIEADDLLATCLQHEIDHLDGRLFIDYISRIKRDMVIRKFKKRAKE 170
>sp|C4K6Y0|DEF_HAMD5 Peptide deformylase OS=Hamiltonella defensa subsp. Acyrthosiphon
pisum (strain 5AT) GN=def PE=3 SV=1
Length = 171
Score = 169 bits (428), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+++PD RL+KIA P+ + D +++I +M ETMY A GIGLAA+QV+IH+++++
Sbjct: 1 MSILQILHFPDDRLRKIASPVKKMDDQIRQIADDMLETMYQAEGIGLAATQVNIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q + INP+++ S E I EGCLS+PG I R+K I + ALN EG+ F
Sbjct: 61 IDVSEDRHQPLILINPELLEKSGETGI-EEGCLSIPGEKAFIPRAKEITIQALNREGRSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+ A+ LLAIC+QHE+DHL GK+F++YLS FK++RI KK K
Sbjct: 120 RLSADDLLAICIQHEMDHLIGKLFVDYLSPFKRQRIQKKMEK 161
>sp|Q8PG20|DEF2_XANAC Peptide deformylase 2 OS=Xanthomonas axonopodis pv. citri (strain
306) GN=def2 PE=3 SV=1
Length = 170
Score = 169 bits (428), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57
M LLPI+ +PD RL+ A P+ ++ + ++ +M TMY A GIGLAASQVD+HK+
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKR 60
Query: 58 LLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEG 117
+++DIS N QVF+NP+I+ E Q+Y EGCLS+PGI+ + R+ I V L+ +G
Sbjct: 61 FMVIDISDEKNLPQVFVNPEIVSKQGE-QLYQEGCLSVPGIYADVSRADAITVRYLDRQG 119
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ E+ A+GLLA+C+QHE+DHL+GK+F++YLS K+E + KK K K
Sbjct: 120 QPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167
>sp|A8GKG5|DEF_SERP5 Peptide deformylase OS=Serratia proteamaculans (strain 568) GN=def
PE=3 SV=1
Length = 169
Score = 169 bits (428), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+K+A P+ E + N+++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHYPDDRLRKVAAPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R+ +++ AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAAAVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAK 164
>sp|B4S291|DEF_ALTMD Peptide deformylase OS=Alteromonas macleodii (strain DSM 17117 /
Deep ecotype) GN=def PE=3 SV=1
Length = 169
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 119/165 (72%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L ++ +PD RL+ +A+P+ E + +K+++ +M ETM GIGLAA+QV+ H Q+++
Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ N+ +VFINP+I I EGCLS+PG + K++R++ I V AL+ G+ F
Sbjct: 61 MDVSEDQNEPRVFINPEITRKDG-STISEEGCLSVPGNYAKVERAEAITVKALDQNGEAF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ AEGLLAIC+QHE+DHL GK+FI+YLS K++RI KK K +
Sbjct: 120 ELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEAR 164
>sp|Q2NQQ4|DEF_SODGM Peptide deformylase OS=Sodalis glossinidius (strain morsitans)
GN=def PE=3 SV=1
Length = 171
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M+LL +++YPD RL+K+A+P+ + + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSLLQVLHYPDERLRKVAKPVVDVNDAIRRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S++ +Q V INP+++ S E I +EGCLS+P + R+++++V AL+ +G F
Sbjct: 61 IDVSESRDQRLVMINPELLEKSGETGI-DEGCLSIPDQRGFVPRAEKVKVQALDRDGNSF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEK 161
>sp|A1JRZ1|DEF_YERE8 Peptide deformylase OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=def PE=3 SV=1
Length = 170
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++YPD RL+KIA P+ E + +++I+ +M ETMY GIGLAA+QVD+H Q+++
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N +Q V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+ LLAIC+QHE+DHL GK+F++YLS K++RI +K K K
Sbjct: 120 ELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAK 164
>sp|Q3YWX3|DEF_SHISS Peptide deformylase OS=Shigella sonnei (strain Ss046) GN=def PE=3
SV=1
Length = 169
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>sp|Q83PZ1|DEF_SHIFL Peptide deformylase OS=Shigella flexneri GN=def PE=3 SV=1
Length = 169
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>sp|Q0T016|DEF_SHIF8 Peptide deformylase OS=Shigella flexneri serotype 5b (strain 8401)
GN=def PE=3 SV=1
Length = 169
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 123/162 (75%), Gaps = 1/162 (0%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ AEGLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.143 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,384,770
Number of Sequences: 539616
Number of extensions: 2335817
Number of successful extensions: 8333
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7356
Number of HSP's gapped (non-prelim): 494
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)