Query psy2880
Match_columns 166
No_of_seqs 148 out of 1103
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:14:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0242 Def N-formylmethionyl- 100.0 5E-67 1.1E-71 409.6 12.1 164 1-164 1-167 (168)
2 PRK12846 peptide deformylase; 100.0 4.7E-65 1E-69 398.8 16.7 163 1-163 1-164 (165)
3 PRK00150 def peptide deformyla 100.0 5.7E-64 1.2E-68 392.7 16.5 163 1-163 1-164 (165)
4 PRK14595 peptide deformylase; 100.0 4.7E-64 1E-68 391.8 14.9 153 1-155 1-153 (162)
5 PRK14598 peptide deformylase; 100.0 2.1E-63 4.7E-68 395.9 15.7 162 2-164 1-166 (187)
6 PRK14597 peptide deformylase; 100.0 3E-63 6.6E-68 388.7 16.0 156 5-163 2-157 (166)
7 TIGR00079 pept_deformyl peptid 100.0 9E-63 2E-67 384.5 15.7 158 4-161 2-160 (161)
8 PRK14596 peptide deformylase; 100.0 5.7E-62 1.2E-66 391.0 15.9 160 2-162 1-176 (199)
9 PF01327 Pep_deformylase: Poly 100.0 2.1E-61 4.6E-66 374.9 15.8 151 3-153 1-156 (156)
10 cd00487 Pep_deformylase Polype 100.0 7.3E-59 1.6E-63 355.5 14.3 139 6-144 1-141 (141)
11 PRK09218 peptide deformylase; 100.0 2.1E-55 4.6E-60 334.4 12.1 134 2-144 1-136 (136)
12 KOG3137|consensus 100.0 6.6E-50 1.4E-54 320.7 11.1 162 3-164 78-258 (267)
13 COG4740 Predicted metalloprote 98.1 1.6E-06 3.5E-11 66.7 2.2 72 69-142 74-160 (176)
14 COG4783 Putative Zn-dependent 63.9 5.5 0.00012 36.4 2.4 102 7-154 50-156 (484)
15 smart00666 PB1 PB1 domain. Pho 61.4 11 0.00024 25.1 3.1 30 106-135 39-68 (81)
16 cd06396 PB1_NBR1 The PB1 domai 56.5 15 0.00034 25.5 3.2 26 107-132 39-64 (81)
17 cd06407 PB1_NLP A PB1 domain i 51.8 20 0.00044 24.7 3.1 28 106-133 39-66 (82)
18 cd06409 PB1_MUG70 The MUG70 pr 51.6 30 0.00066 24.3 4.0 32 103-134 39-70 (86)
19 KOG0400|consensus 51.0 9.1 0.0002 29.3 1.4 44 14-57 11-55 (151)
20 cd06401 PB1_TFG The PB1 domain 48.1 30 0.00066 24.1 3.5 31 103-133 39-69 (81)
21 cd06398 PB1_Joka2 The PB1 doma 46.5 32 0.00069 24.3 3.5 31 104-134 42-72 (91)
22 PF04986 Y2_Tnp: Putative tran 45.1 34 0.00073 26.9 3.9 44 90-135 116-162 (183)
23 cd05992 PB1 The PB1 domain is 40.8 37 0.00079 22.3 3.0 29 106-134 39-67 (81)
24 cd04327 ZnMc_MMP_like_3 Zinc-d 33.7 52 0.0011 25.9 3.3 51 90-144 58-108 (198)
25 cd06402 PB1_p62 The PB1 domain 33.0 59 0.0013 22.9 3.1 29 106-134 46-74 (87)
26 PF00564 PB1: PB1 domain; Int 32.9 38 0.00082 22.4 2.1 30 105-134 39-68 (84)
27 PF11730 DUF3297: Protein of u 30.6 50 0.0011 22.4 2.3 38 83-127 29-66 (71)
28 cd03074 PDI_b'_Calsequestrin_C 28.9 30 0.00064 25.8 1.1 13 42-54 75-87 (120)
29 PF13670 PepSY_2: Peptidase pr 28.5 50 0.0011 22.2 2.1 28 107-134 55-82 (83)
30 smart00435 TOPEUc DNA Topoisom 28.3 1.4E+02 0.003 26.8 5.3 73 88-160 140-215 (391)
31 PF06486 DUF1093: Protein of u 27.1 78 0.0017 21.1 2.9 21 107-127 29-49 (78)
32 cd06404 PB1_aPKC PB1 domain is 27.0 82 0.0018 22.1 3.0 39 87-125 14-58 (83)
33 PF10135 Rod-binding: Rod bind 26.5 45 0.00097 20.4 1.4 13 37-49 32-44 (49)
34 COG2941 CAT5 Ubiquinone biosyn 25.0 32 0.00069 27.9 0.7 14 127-140 75-88 (204)
35 PF14657 Integrase_AP2: AP2-li 22.4 1.3E+02 0.0029 17.9 3.0 22 107-128 3-25 (46)
36 PF11296 DUF3097: Protein of u 22.1 80 0.0017 26.7 2.5 68 45-113 36-116 (275)
37 TIGR01655 yxeA_fam conserved h 21.3 1.3E+02 0.0029 21.8 3.4 21 106-126 55-75 (114)
38 PF13582 Reprolysin_3: Metallo 20.3 62 0.0013 22.9 1.4 15 128-142 107-121 (124)
39 PRK13694 hypothetical protein; 20.0 33 0.00072 24.0 -0.1 36 12-47 12-47 (83)
No 1
>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-67 Score=409.63 Aligned_cols=164 Identities=46% Similarity=0.767 Sum_probs=157.3
Q ss_pred CccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCC---CCceEEEEeee
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKN---NNQLQVFINPK 77 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~---~~~~~v~INP~ 77 (166)
|++++|+.+|||+||++|+||..+|++++++++||++||++++|+||||||||+++|+||+++.++ ...+.+||||+
T Consensus 1 m~i~~Iv~~~~p~Lr~~a~~V~~~d~~l~~li~dM~etm~~~~GVGLAApQIGi~kri~vi~~~~~~~~~~~~~vlINP~ 80 (168)
T COG0242 1 MAIREIVKYPDPRLRQVAKPVEEVDDELRQLIDDMLETMYAAEGVGLAAPQIGISKRIFVIDVEEDGRPKEPPLVLINPE 80 (168)
T ss_pred CCcccceeCCCHHHhcccccccccCHHHHHHHHHHHHHHHhCCCeeeeehhcCceeeEEEEEccCccCcCcCceEEECCE
Confidence 899999999999999999999999999999999999999999999999999999999999999875 23578999999
Q ss_pred EEeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHH
Q psy2880 78 IIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERII 157 (166)
Q Consensus 78 I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~ 157 (166)
|++.|.+..+.+|||||+||+++.|+||++|+|+|+|.+|++++++++||+|||+|||+|||||+||+||+++.++..+.
T Consensus 81 I~~~~~~~~~~~EGCLSvP~~~~~V~R~~~I~V~~~D~~G~~~~~~a~G~lA~~iQHEiDHLnGvlf~D~l~~~k~~~~~ 160 (168)
T COG0242 81 IISKSEETLTGEEGCLSVPGVRGEVERPERITVKYLDRNGKPQELEAEGLLARCIQHEIDHLNGVLFIDRLSPLKRDRLK 160 (168)
T ss_pred EeecCCcccccCcceEeecCceeeeecccEEEEEEEcCCCCEEEEEEcCceeEEeEeeccccCcEEeeeecChhhhhhHH
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy2880 158 KKFLKNI 164 (166)
Q Consensus 158 ~~~~~~~ 164 (166)
+++++..
T Consensus 161 ~~~~~~~ 167 (168)
T COG0242 161 KKLKKLK 167 (168)
T ss_pred HHHHHhc
Confidence 9998864
No 2
>PRK12846 peptide deformylase; Reviewed
Probab=100.00 E-value=4.7e-65 Score=398.77 Aligned_cols=163 Identities=44% Similarity=0.707 Sum_probs=153.7
Q ss_pred CccccceecCCccccccccccccCC-HHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCCceEEEEeeeEE
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPITEFD-INLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKII 79 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~~~~-~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~ 79 (166)
|++++|++||||+||++|+||+.++ +++++++++|++||++++|+||||||||+++|+||++.+++...+.+||||+|+
T Consensus 1 m~~~~I~~~~dpvLr~~~~~V~~~~~~~~~~li~dM~~tm~~~~gvGLAApQVG~~~ri~vi~~~~~~~~~~vliNP~I~ 80 (165)
T PRK12846 1 MAVRPILKMPDPRLRRPAEPVTAFDTEELQALIDDMFETMRAADGVGLAAPQIGVSLRVVVIDLGDDRVPPTVLINPEIT 80 (165)
T ss_pred CCcceeeeCCChHHhccCccCCcCChHHHHHHHHHHHHHHHhCCCcEEeccccCCceeEEEEEccCCCCcceEEECCEEE
Confidence 8899999999999999999999887 999999999999999999999999999999999999986543457899999999
Q ss_pred eecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHHH
Q psy2880 80 WYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKK 159 (166)
Q Consensus 80 ~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~~ 159 (166)
+.|++....+|||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||||||+|||+|+||+||+++.++..+.++
T Consensus 81 ~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~Drl~~~~~~~~~~~ 160 (165)
T PRK12846 81 ELSPEEEVGWEGCLSVPGLRGEVERPARVRVRAQDRDGKPIEIEAEGFLARVLQHEIDHLDGILYTDRLSRLKRERALKK 160 (165)
T ss_pred cCCCCEeccCCCCCccCCcceeecCcceEEEEEECCCCCEEEEEEeCHHHhHHhHHhHhcCCEeehhhCCHHHhHHHHHH
Confidence 99988877899999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred HHhh
Q psy2880 160 FLKN 163 (166)
Q Consensus 160 ~~~~ 163 (166)
+++.
T Consensus 161 ~~~~ 164 (165)
T PRK12846 161 VEKY 164 (165)
T ss_pred hhcc
Confidence 7753
No 3
>PRK00150 def peptide deformylase; Reviewed
Probab=100.00 E-value=5.7e-64 Score=392.68 Aligned_cols=163 Identities=49% Similarity=0.830 Sum_probs=152.4
Q ss_pred CccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCCceEEEEeeeEEe
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIW 80 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~~ 80 (166)
|++++|+++|||+||++|+||+.+++++++++++|++||++++|+||||||||+++|+||++.+++++.+.++|||+|++
T Consensus 1 m~~~~I~~~~~~~Lr~~~~~V~~~~~~~~~li~dm~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~iNP~I~~ 80 (165)
T PRK00150 1 MAILPILRYGDPVLRKVAKPVEEVDDELRKLIDDMFETMYAAPGVGLAAPQVGVSKRIIVIDVEDKEGEPLVLINPEIIS 80 (165)
T ss_pred CCcceeeeCCChHHhccCcccCCCCHHHHHHHHHHHHHHHhCCCcEEEhhhcCcceeEEEEEccCCCCceeEEECCEEec
Confidence 88999999999999999999998999999999999999999999999999999999999999855433578999999998
Q ss_pred ecceEE-cCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHHH
Q psy2880 81 YSKEKQ-IYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKK 159 (166)
Q Consensus 81 ~s~~~~-~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~~ 159 (166)
.|++.. ..+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++..+..+.++
T Consensus 81 ~s~~~~~~~~EGCLS~pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHE~DHL~G~l~~Drl~~~~~~~~~~~ 160 (165)
T PRK00150 81 ESSEEYLTYEEGCLSVPGVYGEVPRPERVTVKALDRDGKPFELEADGLLARCIQHEIDHLNGVLFIDRLSPLKRFRIKKK 160 (165)
T ss_pred CCCCeeccCCCCCCccCCeeeEecCcceeEEEEECCCCCEEEEEEeCHhhhHHhHHhHhhCCEEeeeecChhHHHHHHHH
Confidence 886664 4899999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHhh
Q psy2880 160 FLKN 163 (166)
Q Consensus 160 ~~~~ 163 (166)
+++.
T Consensus 161 ~~~~ 164 (165)
T PRK00150 161 LKKI 164 (165)
T ss_pred hhhc
Confidence 7764
No 4
>PRK14595 peptide deformylase; Provisional
Probab=100.00 E-value=4.7e-64 Score=391.76 Aligned_cols=153 Identities=29% Similarity=0.451 Sum_probs=145.4
Q ss_pred CccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCCceEEEEeeeEEe
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIW 80 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~~ 80 (166)
|++++|++||||+||++|+||+.+++++++++++|++||++++|+||||||||+++|+||++... ..+.+||||+|++
T Consensus 1 M~~~~I~~~~dpvLr~~a~~V~~~~~~l~~li~dM~~tm~~~~gvGLAApQVG~~~ri~vi~~~~--~~~~vlINP~I~~ 78 (162)
T PRK14595 1 MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAALCAPQIGQSLQVAIIDMEM--EGLLQLVNPKIIS 78 (162)
T ss_pred CCcceeeeCCChHHhccceecCcCCHHHHHHHHHHHHHHhhCCCcEEechhcCCceeEEEEEccC--CCceEEECCeeec
Confidence 88999999999999999999999999999999999999999999999999999999999999863 2478999999999
Q ss_pred ecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHH
Q psy2880 81 YSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKER 155 (166)
Q Consensus 81 ~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~ 155 (166)
.|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++...+.
T Consensus 79 ~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~Drl~~~~~~~ 153 (162)
T PRK14595 79 QSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGNKVELTAYDDVARMILHIIDQMNGIPFTERADRILTDK 153 (162)
T ss_pred CCCCEeeCCcCCccCCCcceEecCCCEEEEEEECCCCCEEEEEEeCHHHHHHHHHhHccCCEEEeeecCccccch
Confidence 999987789999999999999999999999999999999999999999999999999999999999998776553
No 5
>PRK14598 peptide deformylase; Provisional
Probab=100.00 E-value=2.1e-63 Score=395.91 Aligned_cols=162 Identities=34% Similarity=0.530 Sum_probs=150.9
Q ss_pred ccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCC----CceEEEEeee
Q psy2880 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNN----NQLQVFINPK 77 (166)
Q Consensus 2 ~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~----~~~~v~INP~ 77 (166)
++++|++||||+||++|.||+.+++++++|+++|++||++++|+||||||||+++|+||++.+... ..+.+||||+
T Consensus 1 ~i~~Iv~~~dpvLr~~~~~V~~~~~~l~~li~dM~~tm~~~~GvGLAApQVG~~~Ri~vid~~~~~~~~~~~~~v~INP~ 80 (187)
T PRK14598 1 MILPINTYSDEVLRQKAKPLKGVDAEIEELIASMFESMYNASGIGLAAPQVGRSLRLLVVDVSCMKEYEDEKPMVVINPH 80 (187)
T ss_pred CCcceeeCCChHHhccCcccCCCCHHHHHHHHHHHHHHHhCCCeEEehhhcCCceeEEEEEcccccccccccceEEECCe
Confidence 478999999999999999999999999999999999999999999999999999999999985432 2368999999
Q ss_pred EEeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHH
Q psy2880 78 IIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERII 157 (166)
Q Consensus 78 I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~ 157 (166)
|++.|+.. ..+|||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||||||+|||+|+||+||+++.++..+.
T Consensus 81 I~~~s~~~-~~~EGCLSvPg~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~LfiDrl~~~~~~~~~ 159 (187)
T PRK14598 81 ILAVKGYN-AMEEGCLSVPGVQGDVVRPSSITLKYRDEHFEERTEEFSGMMARVLQHEIDHLDGTLFVDRMQKRDRRKIQ 159 (187)
T ss_pred eccCCCcc-cCCCCCccCCCcceEEeccCEEEEEEECCCCCEEEEEEecHhhhHHhHhhhccCCEEEEEecChhhhHHHH
Confidence 99988754 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy2880 158 KKFLKNI 164 (166)
Q Consensus 158 ~~~~~~~ 164 (166)
+++++..
T Consensus 160 ~~~~~~~ 166 (187)
T PRK14598 160 KELDAIA 166 (187)
T ss_pred HHHHHHh
Confidence 9887643
No 6
>PRK14597 peptide deformylase; Provisional
Probab=100.00 E-value=3e-63 Score=388.66 Aligned_cols=156 Identities=45% Similarity=0.658 Sum_probs=147.1
Q ss_pred cceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCCceEEEEeeeEEeecce
Q psy2880 5 PIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIWYSKE 84 (166)
Q Consensus 5 ~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~~~s~~ 84 (166)
+|++||||+||++|.||+.+++++++|++||++||++++|+||||||||+++|+||++.. ..+.+||||+|+..|++
T Consensus 2 ~Iv~~~dp~Lr~~~~~V~~~~~~l~~li~dM~~tm~~~~GvGLAApQIGv~~ri~vi~~~---~~~~v~INP~I~~~s~~ 78 (166)
T PRK14597 2 RIRLFGDPVLRKKAKPVTKFDDNLKKTIEEMIETMYHYDGVGLAAPQVGISLRFFVMDDG---SGPKVVINPEIIEKSEE 78 (166)
T ss_pred cEEECCChHHhccCcccCcCCHHHHHHHHHHHHHHHhCCCcEEehhhcCCceeEEEEEcC---CCceEEECCeeccCCCC
Confidence 689999999999999999999999999999999999999999999999999999999874 24789999999999998
Q ss_pred EEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHHHHHhh
Q psy2880 85 KQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163 (166)
Q Consensus 85 ~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~~~~~~ 163 (166)
....+|||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+||+||+++..+..+.+++++.
T Consensus 79 ~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~lfiDrl~~~~~~~~~~~~~~~ 157 (166)
T PRK14597 79 KEIAEEGCLSFPEIFEDVERSKWVKVRYQDERGEVVEELLEGYAARIFQHEYDHLNGVLFIDRLPPAKRLLLRKKLMDI 157 (166)
T ss_pred cccCCCCCCccCCCceEecCCCEEEEEEECCCCCEEEEEEeCHHHHHHHHHhHhhCCEeehhccChhHHHHHHHHHHHH
Confidence 8778999999999999999999999999999999999999999999999999999999999999998888777766654
No 7
>TIGR00079 pept_deformyl peptide deformylase. Peptide deformylase (EC 3.5.1.88), also called polypeptide deformylase, is a metalloenzyme that uses water to release formate from the N-terminal formyl-L-methionine of bacterial and chloroplast peptides. This enzyme should not be confused with formylmethionine deformylase (EC 3.5.1.31) which is active on free N-formyl methionine and has been reported from rat intestine.
Probab=100.00 E-value=9e-63 Score=384.49 Aligned_cols=158 Identities=41% Similarity=0.729 Sum_probs=148.5
Q ss_pred ccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCC-CceEEEEeeeEEeec
Q psy2880 4 LPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNN-NQLQVFINPKIIWYS 82 (166)
Q Consensus 4 ~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~-~~~~v~INP~I~~~s 82 (166)
++|++||||+||++|+||+.+++++++++++|++||++++|+||||||||+++|+||++.++++ ..+.+||||+|++.|
T Consensus 2 ~~I~~~~dp~Lr~~~~~V~~~~~~~~~l~~dM~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~v~iNP~I~~~s 81 (161)
T TIGR00079 2 LEVVHYPDDVLRTIAKPVEKVDDKIRQQLDDMIETMYAEEGIGLAAPQVGIWKRMFVIHLEDDDKEDPLVLINPKIIETS 81 (161)
T ss_pred CceEECCChHHhccccccCCCCHHHHHHHHHHHHHHHhCCCeEEehhhcCcceeEEEEEccCCcCccceEEECCeeccCC
Confidence 6899999999999999999999999999999999999999999999999999999999986543 347899999999999
Q ss_pred ceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHHHHH
Q psy2880 83 KEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFL 161 (166)
Q Consensus 83 ~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~~~~ 161 (166)
++....+|||||+||+++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+||+||+++.++..+.++|.
T Consensus 82 ~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~l~~D~l~~~~~~~~~~~~~ 160 (161)
T TIGR00079 82 GEKSGLEEGCLSVPGVYGYVPRPEKVKIRGFDRFGKPFTIEASGLLARCIQHEMDHLNGVLFVDRISPLKPEKEKKELK 160 (161)
T ss_pred CcEeccCcCCCccCCccceecChhheEEEEECCCCCEEEEEEeCHHHhHHhHHhHhcCCEeeeeecChhhhhHHHHhhh
Confidence 8887788999999999999999999999999999999999999999999999999999999999999988888777653
No 8
>PRK14596 peptide deformylase; Provisional
Probab=100.00 E-value=5.7e-62 Score=391.03 Aligned_cols=160 Identities=33% Similarity=0.641 Sum_probs=144.6
Q ss_pred ccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEe-cCC-C-C----------
Q psy2880 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDI-SKN-N-N---------- 68 (166)
Q Consensus 2 ~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~-~~~-~-~---------- 68 (166)
++++|++||||+||++|+||+.+++++++|++||++||++++|+||||||||+++|+||++. .+. . .
T Consensus 1 ~i~~I~~~gdpvLr~~a~pV~~~~~~l~~li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~ 80 (199)
T PRK14596 1 MVYPIRLYGDPVLRRKARPVQDFDQGIRRLAEDMLETMFEARGVGLAAPQIGLSVRLFVAVEYADDEEEEEGEEAPLRSR 80 (199)
T ss_pred CCccEeeCCChHHhCcCcccCCCCHHHHHHHHHHHHHHHhCCCcEEehhhcCCceeEEEEEeccCccccccccccccccc
Confidence 37899999999999999999999999999999999999999999999999999999999973 211 1 0
Q ss_pred --ceEEEEeeeEEeecceEEcCeecCcccCCCCc-cccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceee
Q psy2880 69 --QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFN-KIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFI 145 (166)
Q Consensus 69 --~~~v~INP~I~~~s~~~~~~~EgCLS~p~~~~-~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~ 145 (166)
.+.+||||+|+..|++. ..+|||||+||+++ .|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+
T Consensus 81 ~~~~~vlINP~I~~~s~~~-~~~EGCLSvPg~~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfi 159 (199)
T PRK14596 81 VLREYVMVNPVITYRKGDQ-SGQEGCLSIPGLYEEGVPRARQVRVEYQDLDGQKRTLEAEGYLARVFQHEIDHLDGILFF 159 (199)
T ss_pred cccceEEECCEEecCCCcc-cCCcCcccccCccceeeeccCEEEEEEECCCCCEEEEEEeChhhhhhhhhhhhcCCEeeh
Confidence 15799999999977765 58999999999986 899999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHh
Q psy2880 146 EYLSNFKKERIIKKFLK 162 (166)
Q Consensus 146 D~~~~~~~~~~~~~~~~ 162 (166)
||+++.++..+.+++++
T Consensus 160 Drl~~~~~~~~~~~~~~ 176 (199)
T PRK14596 160 DRLPKAKREAFLEAHRR 176 (199)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 99999888777665544
No 9
>PF01327 Pep_deformylase: Polypeptide deformylase; InterPro: IPR023635 Peptide deformylase (PDF) is an essential metalloenzyme required for the removal of the formyl group at the N terminus of nascent polypeptide chains in eubacteria: 3.5.1.88 from EC []. The enzyme acts as a monomer and binds a single zinc ion, catalysing the reaction:: N-formyl-L-methionine + H2O = formate + methionyl peptide Catalytic efficiency strongly depends on the identity of the bound metal []. The structure of these enzymes is known [, ]. PDF, a member of the zinc metalloproteases family, comprises an active core domain of 147 residues and a C-terminal tail of 21 residue. The 3D fold of the catalytic core has been determined by X-ray crystallography and NMR. Overall, the structure contains a series of anti-parallel beta- strands that surround two perpendicular alpha-helices. The C-terminal helix contains the characteristic HEXXH motif of metalloenzymes, which is crucial for activity. The helical arrangement, and the way the histidine residues bind the zinc ion, is reminiscent of other metalloproteases, such as thermolysin or metzincins. However, the arrangement of secondary and tertiary structures of PDF, and the positioning of its third zinc ligand (a cysteine residue), are quite different. These discrepancies, together with notable biochemical differences, suggest that PDF constitutes a new class of zinc-metalloproteases. [].; PDB: 2OS1_A 2OS0_A 1LME_B 3QU1_A 1N5N_B 1S17_B 1LRY_A 1IX1_A 1WS1_A 1WS0_A ....
Probab=100.00 E-value=2.1e-61 Score=374.93 Aligned_cols=151 Identities=47% Similarity=0.761 Sum_probs=136.1
Q ss_pred cccceecCCccccccccccccCCHH-HHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCCce----EEEEeee
Q psy2880 3 LLPIIYYPDIRLKKIAEPITEFDIN-LKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQL----QVFINPK 77 (166)
Q Consensus 3 ~~~I~~~~dp~Lr~~~~~V~~~~~~-~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~----~v~INP~ 77 (166)
+++|+++|||+||++|.+|+.++++ +++++++|++||++++|+||||||||+++|+|+++.+.....+ .+||||+
T Consensus 1 ~~~I~~~~dp~Lr~~a~~V~~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~~v~INP~ 80 (156)
T PF01327_consen 1 VRPIVQYGDPVLRQKAQPVDDFDDEEIKQLIDDMFETMYAANGVGLAAPQIGIPKRIFVIDIPDEKPEPSEPETVLINPK 80 (156)
T ss_dssp GGGSE-TTSGGGGSB-BB-SSSSHHHHHHHHHHHHHHHHHTTBSEEEGGGGTS-BSEEEEEEETTSSSESEEEEEEEEEE
T ss_pred CCCEEECCChHHhccCeeCCCCChHHHHHHHHHHHHHHHHhccceEehhhcCchheEEEEecCcccccCCccceEEECCE
Confidence 5799999999999999999988865 9999999999999999999999999999999999998765432 5999999
Q ss_pred EEeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHH
Q psy2880 78 IIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKK 153 (166)
Q Consensus 78 I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~ 153 (166)
|+..|++....||||||+||+++.|+||.+|+|+|+|++|++++++++||.|||+|||+|||+|+||+||+++.+|
T Consensus 81 I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~r 156 (156)
T PF01327_consen 81 ITSSSEETVEDWEGCLSVPGIRGKVERPKKITVRYYDLDGKPIELEAEGFLARCIQHEIDHLNGILFIDRLSPKKR 156 (156)
T ss_dssp EEESSEEEEEEEEEETTSTTEEEEEEEESEEEEEEEETTS-EEEEEEEHHHHHHHHHHHHHHTT--GGGGSSHHHH
T ss_pred EecccCCcCccccCCCccCCccccCCCcceEEEEEECCCCeEEEEEEccccEEeeeehhhhhCCEehhhccCccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998875
No 10
>cd00487 Pep_deformylase Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II) as the catalytic metal ion, which can be replaced with a nickel or cobalt ion with no loss of activity. There are two types of peptide deformylases, types I and II, which differ in structure only in the outer surface of the domain. Because these enzymes are essential only in prokaryotes (although eukaryotic gene sequences have been found), they are a target for a new class of antibacterial agents.
Probab=100.00 E-value=7.3e-59 Score=355.49 Aligned_cols=139 Identities=47% Similarity=0.793 Sum_probs=132.6
Q ss_pred ceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCC--CCceEEEEeeeEEeecc
Q psy2880 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKN--NNQLQVFINPKIIWYSK 83 (166)
Q Consensus 6 I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~--~~~~~v~INP~I~~~s~ 83 (166)
|+++|||+||++|.+|+.+++++++++++|++||++++|+||||||||+++|+|+++.++. ...+.+||||+|++.|+
T Consensus 1 iv~~~~p~Lr~~a~~v~~~~~~~~~li~dm~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~v~INP~I~~~s~ 80 (141)
T cd00487 1 IVQYPDPVLRKKAKPVEEFDDELKQLIDDMFETMYAAPGVGLAAPQIGVSKRIFVIDVPDEENKEPPLVLINPEIIESSG 80 (141)
T ss_pred CeECCChHHhccccccCCCCHHHHHHHHHHHHHHHhCCCcEEEhhhcCCceeEEEEEcccccccccceEEECCeEeccCC
Confidence 6899999999999999999999999999999999999999999999999999999999753 23578999999999999
Q ss_pred eEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCcee
Q psy2880 84 EKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIF 144 (166)
Q Consensus 84 ~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 144 (166)
+....+|||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+||
T Consensus 81 ~~~~~~EgCLS~pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 141 (141)
T cd00487 81 ETEYGEEGCLSVPGYRGEVERPKKVTVRYLDEDGNPIELEAEGFLARCIQHEIDHLNGILF 141 (141)
T ss_pred CEeeCCcCCcCcCCcceEecCcCEEEEEEECCCCCEEEEEEeCHhhhhHhHHhHhhCCEEC
Confidence 9877799999999999999999999999999999999999999999999999999999997
No 11
>PRK09218 peptide deformylase; Validated
Probab=100.00 E-value=2.1e-55 Score=334.38 Aligned_cols=134 Identities=28% Similarity=0.428 Sum_probs=124.4
Q ss_pred ccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhc--CCceeecccccccccEEEEEecCCCCceEEEEeeeEE
Q psy2880 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHA--MGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKII 79 (166)
Q Consensus 2 ~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~--~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~ 79 (166)
++++|+. |||+||++|+||+.+++ ++++||++||+++ +|+||||||||+++|+|+++... .+.+||||+|+
T Consensus 1 ~~~~i~~-~~~~Lr~~~~~V~~~~~---~li~dM~~tm~~~~~~gvGLAApQIGv~~ri~vi~~~~---~~~vlINP~I~ 73 (136)
T PRK09218 1 MIKPIVK-DQLFLSQKSQPATKEDL---QLAQDLQDTLLANRDECVGMAANMIGVQKRIIIFSLGF---VPVVMFNPVIV 73 (136)
T ss_pred Ccceecc-CCHHHcCcCccCChhHH---HHHHHHHHHHHhcCCCCEEEEHHHCCcCceEEEEECCC---CcEEEECCEEe
Confidence 3789999 99999999999988764 9999999999998 58999999999999999999842 47899999999
Q ss_pred eecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCcee
Q psy2880 80 WYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIF 144 (166)
Q Consensus 80 ~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 144 (166)
..|++. ..+|||||+||+. .|+||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+|+
T Consensus 74 ~~s~~~-~~~EGCLS~P~~~-~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~iQHEiDHL~G~L~ 136 (136)
T PRK09218 74 SKSGPY-ETEEGCLSLTGER-PTKRYEEITVKYLDRNWREQTQTFTGFTAQIIQHELDHCEGILI 136 (136)
T ss_pred cCCCce-eCCccceecCCCc-cccCcceeEEEEECCCCCEEEEEEeChhhhhhhhHhhccCCEEC
Confidence 988876 5789999999997 79999999999999999999999999999999999999999985
No 12
>KOG3137|consensus
Probab=100.00 E-value=6.6e-50 Score=320.68 Aligned_cols=162 Identities=31% Similarity=0.515 Sum_probs=148.0
Q ss_pred cccceecCCccccccccccc---cCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCC-------C-----
Q psy2880 3 LLPIIYYPDIRLKKIAEPIT---EFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKN-------N----- 67 (166)
Q Consensus 3 ~~~I~~~~dp~Lr~~~~~V~---~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~-------~----- 67 (166)
..+|+++|||+||.++.+|+ -.+++++.|+++|++.|+..+|+||||||||+|.|++|++..+. .
T Consensus 78 ~~~iv~~gDPVLr~ka~~Vdraqig~e~lq~lvd~m~~VMr~~~gVGLsAPQvGvp~q~~vle~~~alcrecP~~~ra~r 157 (267)
T KOG3137|consen 78 PLKIVEYGDPVLRAKAKRVDRAQIGDENLQNLVDAMFDVMRKTDGVGLSAPQVGVPVQLMVLEPAGALCRECPEPGRAER 157 (267)
T ss_pred hHHhhccCCHhhhhccccCChhhcCCHHHHHHHHHHHHHHHhCCCccccCcccCCceEEEEecChHHHHhcCCChhhhHh
Confidence 35799999999999999998 35899999999999999999999999999999999999987641 1
Q ss_pred ----CceEEEEeeeEEeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCce
Q psy2880 68 ----NQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKI 143 (166)
Q Consensus 68 ----~~~~v~INP~I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l 143 (166)
.+..||+||++...|+..+.+.|||||+||+++.|+||..|.|.++|.+|+.+++.++||.||+||||+|||+|.|
T Consensus 158 qmepf~l~V~VNP~lk~~s~klv~F~EGClSv~Gf~A~V~R~q~V~i~g~D~~Ger~~~~aSgw~ARI~QHE~DHL~G~L 237 (267)
T KOG3137|consen 158 QMEPFKLIVLVNPKLKKYSDKLVPFDEGCLSVPGFYAEVVRPQSVKIDGRDITGERFSISASGWPARIFQHEYDHLEGVL 237 (267)
T ss_pred hccCCCeEEEecchHhhhcccccccccccccccchhhcccccceEEEeeecCCCCEEEEecccchHHHHHhHhhhhccee
Confidence 2468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCHHHHHHHHHHHHhhh
Q psy2880 144 FIEYLSNFKKERIIKKFLKNI 164 (166)
Q Consensus 144 ~~D~~~~~~~~~~~~~~~~~~ 164 (166)
|+|+|.+.....+........
T Consensus 238 f~DkM~~rtf~~V~~~~~~l~ 258 (267)
T KOG3137|consen 238 FFDKMTDRTFDSVREELEALE 258 (267)
T ss_pred eeeecccHhHhHHHHhhhhhh
Confidence 999999887776666544443
No 13
>COG4740 Predicted metalloprotease [General function prediction only]
Probab=98.10 E-value=1.6e-06 Score=66.70 Aligned_cols=72 Identities=29% Similarity=0.351 Sum_probs=57.0
Q ss_pred ceEEEEeeeEEeecceEEcCeecCcccCCCCccccccCceEEEEE-------CCC--------CCEEEEEEechhhhHHH
Q psy2880 69 QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHAL-------NIE--------GKMFEIIAEGLLAICLQ 133 (166)
Q Consensus 69 ~~~v~INP~I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~-------d~~--------G~~~~~~~~g~~Ar~~Q 133 (166)
..+.|+||+|++..+.. +-.|.|-|--. +..|.||.+++|+.- |.- -++.++.++|..|.-+.
T Consensus 74 ~~YLflNPeIi~~EGt~-~RlEKCG~r~e-Relv~RPyR~~vr~d~~l~a~vdPg~~~IRvreL~k~~lrl~G~pAy~~a 151 (176)
T COG4740 74 DLYLFLNPEIIRAEGTL-TRLEKCGRRRE-RELVKRPYRLEVRHDGGLIARVDPGRRRIRVRELDKGTLRLEGIPAYNLA 151 (176)
T ss_pred heeeeeChhheeccceE-EehhhhcchHH-HHHhcCCeEEEEecCceEEEEECCccceEEEEecCCCeEEEecCccchhH
Confidence 46899999999876654 68999988653 457999999999863 221 14456889999999999
Q ss_pred HHhhhhCCc
Q psy2880 134 HEIDHLNGK 142 (166)
Q Consensus 134 HEiDHL~G~ 142 (166)
||+.||.|-
T Consensus 152 HEleHLeg~ 160 (176)
T COG4740 152 HELEHLEGD 160 (176)
T ss_pred HHHHHhhcC
Confidence 999999983
No 14
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=63.87 E-value=5.5 Score=36.39 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=65.0
Q ss_pred eecCCccccccccccccC-CHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCC----ceEEEEeeeEEee
Q psy2880 7 IYYPDIRLKKIAEPITEF-DINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNN----QLQVFINPKIIWY 81 (166)
Q Consensus 7 ~~~~dp~Lr~~~~~V~~~-~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~----~~~v~INP~I~~~ 81 (166)
+.+|++..+|-=.++..+ |+++.+++++.=.-+.++ |.+.-.+..+|+|+...-+. ..+|+||-
T Consensus 50 v~~g~~~~~Qlr~~~~~i~D~el~~yv~~~g~rL~~~------a~~~~~~f~f~lV~d~~iNAFA~~Gg~v~vnt----- 118 (484)
T COG4783 50 VALGDPANAQLRGSVPLIRDPELEEYVNSLGQRLAAA------ADLVKTPFTFFLVNDDSINAFATPGGYVVVNT----- 118 (484)
T ss_pred HHhhHHHHHHhccCCCCcCCHHHHHHHHHHHHHHHHh------cCCCCCCeEEEEecCCccchhhcCCceEEEeh-----
Confidence 457888777765555543 789999999998777664 35566666677665432110 12333332
Q ss_pred cceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHH
Q psy2880 82 SKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKE 154 (166)
Q Consensus 82 s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~ 154 (166)
|--..-+-+.-+|-|+-||+-|+.|.=+.-.+....|.
T Consensus 119 -----------------------------------GLll~ae~esElagViAHEigHv~qrH~aR~~e~~~r~ 156 (484)
T COG4783 119 -----------------------------------GLLLTAENESELAGVIAHEIGHVAQRHLARSMEQQQRA 156 (484)
T ss_pred -----------------------------------HHHHhcCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 22222334567899999999999998777666655544
No 15
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=61.37 E-value=11 Score=25.07 Aligned_cols=30 Identities=7% Similarity=0.205 Sum_probs=25.9
Q ss_pred CceEEEEECCCCCEEEEEEechhhhHHHHH
Q psy2880 106 KRIRVHALNIEGKMFEIIAEGLLAICLQHE 135 (166)
Q Consensus 106 ~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHE 135 (166)
..++++|.|.+|..+++.-+.-+..++++=
T Consensus 39 ~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~ 68 (81)
T smart00666 39 QSFTLKYQDEDGDLVSLTSDEDLEEAIEEY 68 (81)
T ss_pred CCeEEEEECCCCCEEEecCHHHHHHHHHHH
Confidence 579999999999999999888888887763
No 16
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=56.53 E-value=15 Score=25.54 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCEEEEEEechhhhHH
Q psy2880 107 RIRVHALNIEGKMFEIIAEGLLAICL 132 (166)
Q Consensus 107 ~I~v~~~d~~G~~~~~~~~g~~Ar~~ 132 (166)
.++++|.|.+|+++.+.-+.-+--|+
T Consensus 39 ~f~lKYlDde~e~v~lssd~eLeE~~ 64 (81)
T cd06396 39 DIQIKYVDEENEEVSVNSQGEYEEAL 64 (81)
T ss_pred cceeEEEcCCCCEEEEEchhhHHHHH
Confidence 79999999999999998877655444
No 17
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=51.78 E-value=20 Score=24.74 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=24.0
Q ss_pred CceEEEEECCCCCEEEEEEechhhhHHH
Q psy2880 106 KRIRVHALNIEGKMFEIIAEGLLAICLQ 133 (166)
Q Consensus 106 ~~I~v~~~d~~G~~~~~~~~g~~Ar~~Q 133 (166)
..++++|.|.+|+++.++-+.-+.-|+.
T Consensus 39 ~~f~LkY~Ddegd~v~ltsd~DL~eai~ 66 (82)
T cd06407 39 SAFDLKYLDDDEEWVLLTCDADLEECID 66 (82)
T ss_pred CeeEEEEECCCCCeEEeecHHHHHHHHH
Confidence 5799999999999999999887766653
No 18
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=51.56 E-value=30 Score=24.28 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=27.9
Q ss_pred cccCceEEEEECCCCCEEEEEEechhhhHHHH
Q psy2880 103 KRSKRIRVHALNIEGKMFEIIAEGLLAICLQH 134 (166)
Q Consensus 103 ~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QH 134 (166)
.+.....++|.|-+|+.+.++.+.-+.-|+.|
T Consensus 39 ~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~i 70 (86)
T cd06409 39 FETHLYALSYVDDEGDIVLITSDSDLVAAVLV 70 (86)
T ss_pred ccCCcccEEEEcCCCCEEEEeccchHHHHHHH
Confidence 34567899999999999999999988888876
No 19
>KOG0400|consensus
Probab=50.99 E-value=9.1 Score=29.30 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=32.8
Q ss_pred ccccccccc-cCCHHHHHHHHHHHHHHhhcCCceeeccccccccc
Q psy2880 14 LKKIAEPIT-EFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQ 57 (166)
Q Consensus 14 Lr~~~~~V~-~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~r 57 (166)
+...|.|.. .+..-++...++|.+-.+...--||.++|||+-.|
T Consensus 11 is~SAlPY~r~~PtWlK~~~ddvkeqI~K~akKGltpsqIGviLR 55 (151)
T KOG0400|consen 11 ISGSALPYRRSVPTWLKLTADDVKEQIYKLAKKGLTPSQIGVILR 55 (151)
T ss_pred cccCccccccCCcHHHhcCHHHHHHHHHHHHHcCCChhHceeeee
Confidence 344555554 34456778888999988888889999999998654
No 20
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=48.07 E-value=30 Score=24.14 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=24.0
Q ss_pred cccCceEEEEECCCCCEEEEEEechhhhHHH
Q psy2880 103 KRSKRIRVHALNIEGKMFEIIAEGLLAICLQ 133 (166)
Q Consensus 103 ~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~Q 133 (166)
+-.+.+.|+|.|.+|..++++-+--++-.+|
T Consensus 39 ~~~~~flIKYkD~dGDlVTIts~~dL~~A~~ 69 (81)
T cd06401 39 GSSDDVLIKYKDEDGDLITIFDSSDLSFAIQ 69 (81)
T ss_pred CCcccEEEEEECCCCCEEEeccHHHHHHHHh
Confidence 3346899999999999999987765555544
No 21
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=46.51 E-value=32 Score=24.27 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=26.8
Q ss_pred ccCceEEEEECCCCCEEEEEEechhhhHHHH
Q psy2880 104 RSKRIRVHALNIEGKMFEIIAEGLLAICLQH 134 (166)
Q Consensus 104 R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QH 134 (166)
+...+.++|.|.+|+.+.+.-+.-+.-|+|.
T Consensus 42 ~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 42 PDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred CCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 3467899999999999999999988888875
No 22
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=45.07 E-value=34 Score=26.91 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=27.8
Q ss_pred ecCcccCCCCccccccCceEEEEECCC-CCEEEEE--EechhhhHHHHH
Q psy2880 90 EGCLSLPGIFNKIKRSKRIRVHALNIE-GKMFEII--AEGLLAICLQHE 135 (166)
Q Consensus 90 EgCLS~p~~~~~V~R~~~I~v~~~d~~-G~~~~~~--~~g~~Ar~~QHE 135 (166)
-+++|-.-+.. +. ...|+.+|.|.. ++...++ ...|.+|.+||=
T Consensus 116 R~~is~~Ri~~-~~-~~~V~f~y~d~~~~~~~~~~l~~~efi~r~l~Hv 162 (183)
T PF04986_consen 116 RPAISNSRIVS-YD-DGTVTFRYKDHRTKKTKTLTLSAEEFIRRLLQHV 162 (183)
T ss_pred hccccccceEE-ec-cceeEEEEEcCCCCcEEEEEechHHHHHHHHhhc
Confidence 34444444432 12 566899999974 4444444 455999999993
No 23
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=40.81 E-value=37 Score=22.29 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=24.7
Q ss_pred CceEEEEECCCCCEEEEEEechhhhHHHH
Q psy2880 106 KRIRVHALNIEGKMFEIIAEGLLAICLQH 134 (166)
Q Consensus 106 ~~I~v~~~d~~G~~~~~~~~g~~Ar~~QH 134 (166)
..+.++|.|.+|..+.+.-+.-+..++++
T Consensus 39 ~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~ 67 (81)
T cd05992 39 VSFKLKYPDEDGDLVTISSDEDLEEAIEE 67 (81)
T ss_pred CcEEEEeeCCCCCEEEeCCHHHHHHHHHH
Confidence 67899999999999999987777766665
No 24
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=33.74 E-value=52 Score=25.91 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=27.6
Q ss_pred ecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCcee
Q psy2880 90 EGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIF 144 (166)
Q Consensus 90 EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 144 (166)
.||-|.-|..+...+....++..-...... .....-.+++||+=|.-|..-
T Consensus 58 ~Gc~S~vG~~~~~~~~~~~t~~l~~~~~~~----~~~~~~~~i~HElgHaLG~~H 108 (198)
T cd04327 58 DGYWSYVGTDALLIGADAPTMNLGWFTDDT----PDPEFSRVVLHEFGHALGFIH 108 (198)
T ss_pred CCCCCCcCCcccccCCCCceeeeeeecCCC----chhhHHHHHHHHHHHHhcCcc
Confidence 489998886543223333344321100000 011233599999999999754
No 25
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=33.03 E-value=59 Score=22.86 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=23.3
Q ss_pred CceEEEEECCCCCEEEEEEechhhhHHHH
Q psy2880 106 KRIRVHALNIEGKMFEIIAEGLLAICLQH 134 (166)
Q Consensus 106 ~~I~v~~~d~~G~~~~~~~~g~~Ar~~QH 134 (166)
..++++|.|.+|..+++.-+.-+...++.
T Consensus 46 ~~ftlky~DeeGDlvtIssdeEL~~A~~~ 74 (87)
T cd06402 46 KNFQLFWKDEEGDLVAFSSDEELVMALGS 74 (87)
T ss_pred CcEEEEEECCCCCEEeecCHHHHHHHHHc
Confidence 57999999999999999877766555443
No 26
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=32.85 E-value=38 Score=22.39 Aligned_cols=30 Identities=10% Similarity=0.253 Sum_probs=24.0
Q ss_pred cCceEEEEECCCCCEEEEEEechhhhHHHH
Q psy2880 105 SKRIRVHALNIEGKMFEIIAEGLLAICLQH 134 (166)
Q Consensus 105 ~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QH 134 (166)
...+.++|.|.+|..+.+.-+.-+..+++.
T Consensus 39 ~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~ 68 (84)
T PF00564_consen 39 DEDFQLKYKDEDGDLVTISSDEDLQEAIEQ 68 (84)
T ss_dssp TSSEEEEEEETTSSEEEESSHHHHHHHHHH
T ss_pred CccEEEEeeCCCCCEEEeCCHHHHHHHHHH
Confidence 478999999999999998877766655554
No 27
>PF11730 DUF3297: Protein of unknown function (DUF3297); InterPro: IPR021724 This family is expressed in Proteobacteria and Actinobacteria. The function is not known.
Probab=30.62 E-value=50 Score=22.39 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=26.8
Q ss_pred ceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEech
Q psy2880 83 KEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGL 127 (166)
Q Consensus 83 ~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~ 127 (166)
.+.....|-|.|=.-++..+. ++.|..|++..++++|-
T Consensus 29 ~Er~nVeEYciSEGWvrv~~g-------ka~DR~G~Pl~iklkG~ 66 (71)
T PF11730_consen 29 KERTNVEEYCISEGWVRVAAG-------KALDRRGNPLTIKLKGT 66 (71)
T ss_pred eEcccceeEeccCCEEEeecC-------cccccCCCeeEEEEcce
Confidence 344457889999665433222 46799999999999984
No 28
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=28.90 E-value=30 Score=25.76 Aligned_cols=13 Identities=31% Similarity=0.601 Sum_probs=10.8
Q ss_pred cCCceeecccccc
Q psy2880 42 AMGIGLAASQVDI 54 (166)
Q Consensus 42 ~~gvGLAApQIG~ 54 (166)
.-|+-|..||||+
T Consensus 75 tF~IDl~~PqIGV 87 (120)
T cd03074 75 TFGIDLFRPQIGV 87 (120)
T ss_pred hcCcccCCCceee
Confidence 3479999999995
No 29
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=28.48 E-value=50 Score=22.23 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=22.6
Q ss_pred ceEEEEECCCCCEEEEEEechhhhHHHH
Q psy2880 107 RIRVHALNIEGKMFEIIAEGLLAICLQH 134 (166)
Q Consensus 107 ~I~v~~~d~~G~~~~~~~~g~~Ar~~QH 134 (166)
...|++.|.+|+.+++.++.-..++++.
T Consensus 55 ~yev~~~~~dG~~~ev~vD~~tG~V~~~ 82 (83)
T PF13670_consen 55 CYEVEARDKDGKKVEVYVDPATGEVVKE 82 (83)
T ss_pred EEEEEEEECCCCEEEEEEcCCCCeEeec
Confidence 4778899999999999998776666554
No 30
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=28.34 E-value=1.4e+02 Score=26.83 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=53.7
Q ss_pred CeecCcccCCCCccccccCceEEEEECCCCCEEEE--EEechhhhHHHHHhhh-hCCceeeccCCHHHHHHHHHHH
Q psy2880 88 YNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI--IAEGLLAICLQHEIDH-LNGKIFIEYLSNFKKERIIKKF 160 (166)
Q Consensus 88 ~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~--~~~g~~Ar~~QHEiDH-L~G~l~~D~~~~~~~~~~~~~~ 160 (166)
..=||.|+----..+..+..|+..|.-.+|..+.. ..+--+++.++-=.|. +-|--.+|++++..-+..++++
T Consensus 140 ~T~Gl~TLR~eHV~l~~~~~v~fdF~GKdgir~~~~v~vd~~l~k~L~~~~~~k~pg~~LF~~l~s~~lN~yLke~ 215 (391)
T smart00435 140 DTVGCCSLRVEHVTLKPPNKVIFDFLGKDSIRYYNEVEVDKQVFKNLKIFMKPKKPGDDLFDRLNTSKLNKHLKEL 215 (391)
T ss_pred CCEeecccchhheEecCCCEEEEEEeCCCCcEEEEEEecCHHHHHHHHHHhcCCCChHHHHhhCCHHHHHHHHHHH
Confidence 34499999876666666789999999999998854 4456777777666652 5566556888888777766655
No 31
>PF06486 DUF1093: Protein of unknown function (DUF1093); InterPro: IPR006542 These are a family of small (about 115 amino acids) uncharacterised proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.; PDB: 3NPP_B 2K5Q_A 2K5W_A.
Probab=27.08 E-value=78 Score=21.10 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=15.6
Q ss_pred ceEEEEECCCCCEEEEEEech
Q psy2880 107 RIRVHALNIEGKMFEIIAEGL 127 (166)
Q Consensus 107 ~I~v~~~d~~G~~~~~~~~g~ 127 (166)
.=++.++|.+|+.+++++...
T Consensus 29 ~Y~l~~yd~~G~~k~l~f~~~ 49 (78)
T PF06486_consen 29 EYTLKGYDEDGKEKTLTFTAS 49 (78)
T ss_dssp EEEEEEEETT--EEEEEEEES
T ss_pred EEEEEEECCCCCEEEEEEEec
Confidence 356888999999999998864
No 32
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=27.01 E-value=82 Score=22.08 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=27.3
Q ss_pred cCeecCcccCCCCc------cccccCceEEEEECCCCCEEEEEEe
Q psy2880 87 IYNEGCLSLPGIFN------KIKRSKRIRVHALNIEGKMFEIIAE 125 (166)
Q Consensus 87 ~~~EgCLS~p~~~~------~V~R~~~I~v~~~d~~G~~~~~~~~ 125 (166)
+..+.++|+..+.. ...+....+++|.|++|.++++.-+
T Consensus 14 t~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~ 58 (83)
T cd06404 14 TSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQ 58 (83)
T ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCH
Confidence 34555666665432 2345678999999999999988654
No 33
>PF10135 Rod-binding: Rod binding protein; InterPro: IPR019301 The N-terminal domain of the FlgJ protein is directly involved in flagellar rod assembly, while the adjacent C-terminal domain is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring [].
Probab=26.53 E-value=45 Score=20.38 Aligned_cols=13 Identities=46% Similarity=0.634 Sum_probs=9.5
Q ss_pred HHHhhcCCceeec
Q psy2880 37 ETMYHAMGIGLAA 49 (166)
Q Consensus 37 ~tm~~~~gvGLAA 49 (166)
+.|...+|+|||.
T Consensus 32 ~~~a~~gg~GLa~ 44 (49)
T PF10135_consen 32 KEMAKSGGIGLAD 44 (49)
T ss_pred HHHHHcCCCcHHH
Confidence 3556678999985
No 34
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=25.02 E-value=32 Score=27.91 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=10.6
Q ss_pred hhhhHHHHHhhhhC
Q psy2880 127 LLAICLQHEIDHLN 140 (166)
Q Consensus 127 ~~Ar~~QHEiDHL~ 140 (166)
.+=-+.+||+|||+
T Consensus 75 ~l~em~d~E~~HL~ 88 (204)
T COG2941 75 QLKEMADEEIDHLA 88 (204)
T ss_pred HHHHHHHHHHHHHH
Confidence 34457889999997
No 35
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=22.39 E-value=1.3e+02 Score=17.92 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=18.0
Q ss_pred ceEEE-EECCCCCEEEEEEechh
Q psy2880 107 RIRVH-ALNIEGKMFEIIAEGLL 128 (166)
Q Consensus 107 ~I~v~-~~d~~G~~~~~~~~g~~ 128 (166)
.+.|. |.|.+|+.+...-.||.
T Consensus 3 ~~~v~g~~~~~Gkrk~~~k~GF~ 25 (46)
T PF14657_consen 3 YYRVYGYDDETGKRKQKTKRGFK 25 (46)
T ss_pred EEEEEEEECCCCCEEEEEcCCCC
Confidence 35664 78889999999999985
No 36
>PF11296 DUF3097: Protein of unknown function (DUF3097); InterPro: IPR021447 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.12 E-value=80 Score=26.72 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=43.3
Q ss_pred ceeecccccccccEEEEEecCC-------------CCceEEEEeeeEEeecceEEcCeecCcccCCCCccccccCceEEE
Q psy2880 45 IGLAASQVDIHKQLLILDISKN-------------NNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVH 111 (166)
Q Consensus 45 vGLAApQIG~~~ri~vi~~~~~-------------~~~~~v~INP~I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~ 111 (166)
-|...--||+.+..+..+.... ++.|..+.-|.-....... -..-|+.-++|.++.|.|+.+|.|+
T Consensus 36 sGf~GAVv~~e~~~V~LEDR~G~~R~FplgpgFl~dG~pV~L~~P~~~~~~~~~-rtaSGS~av~~~rArvAr~SRIwVE 114 (275)
T PF11296_consen 36 SGFVGAVVRVEKGGVVLEDRHGRRRSFPLGPGFLLDGKPVTLVRPRRAAPAAPR-RTASGSVAVEGARARVARASRIWVE 114 (275)
T ss_pred CCceEEEEEEEcceEEEecCCCCCcccCCCCceeECCeeEEEeCCCCCCCCCCc-CcCCCceecCCCcccccccceeEEe
Confidence 4555555666666655433221 1245566666333323332 3566888899999999999999999
Q ss_pred EE
Q psy2880 112 AL 113 (166)
Q Consensus 112 ~~ 113 (166)
+.
T Consensus 115 G~ 116 (275)
T PF11296_consen 115 GR 116 (275)
T ss_pred cc
Confidence 87
No 37
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=21.34 E-value=1.3e+02 Score=21.78 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=18.0
Q ss_pred CceEEEEECCCCCEEEEEEec
Q psy2880 106 KRIRVHALNIEGKMFEIIAEG 126 (166)
Q Consensus 106 ~~I~v~~~d~~G~~~~~~~~g 126 (166)
..=++.++|++|+.++++++.
T Consensus 55 y~Y~~~~yd~~G~~k~i~f~~ 75 (114)
T TIGR01655 55 YEYKLDAYDSSGKKHKVKFMA 75 (114)
T ss_pred EEEEEEEECCCCCEEEEEEEc
Confidence 556789999999999999964
No 38
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=20.26 E-value=62 Score=22.88 Aligned_cols=15 Identities=33% Similarity=0.255 Sum_probs=12.3
Q ss_pred hhhHHHHHhhhhCCc
Q psy2880 128 LAICLQHEIDHLNGK 142 (166)
Q Consensus 128 ~Ar~~QHEiDHL~G~ 142 (166)
...++.||+=|.-|-
T Consensus 107 ~~~~~~HEiGH~lGl 121 (124)
T PF13582_consen 107 GVDTFAHEIGHNLGL 121 (124)
T ss_dssp STTHHHHHHHHHTT-
T ss_pred cceEeeehhhHhcCC
Confidence 349999999999874
No 39
>PRK13694 hypothetical protein; Provisional
Probab=20.02 E-value=33 Score=24.04 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=30.6
Q ss_pred ccccccccccccCCHHHHHHHHHHHHHHhhcCCcee
Q psy2880 12 IRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGL 47 (166)
Q Consensus 12 p~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGL 47 (166)
..||+.-+.|..+..+.+.+.+++.+.+..+.|.|.
T Consensus 12 ~~Lr~fIERIERLEeEkk~i~~dikdVyaEAK~~Gf 47 (83)
T PRK13694 12 EQLRAFIERIERLEEEKKTISDDIKDVYAEAKGNGF 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 467888888887888899999999999999888875
Done!