Query psy2880
Match_columns 166
No_of_seqs 148 out of 1103
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:15:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u04_A Peptide deformylase 1; 100.0 2.2E-68 7.7E-73 424.6 19.8 165 1-165 3-186 (190)
2 1n5n_A Peptide deformylase; me 100.0 2.7E-67 9.2E-72 414.7 19.8 164 1-164 13-176 (180)
3 3qu1_A Peptide deformylase 2; 100.0 1.2E-67 4.1E-72 414.1 17.4 163 1-165 4-167 (171)
4 1xeo_A Peptide deformylase; co 100.0 6.1E-67 2.1E-71 409.2 19.1 162 2-164 1-162 (168)
5 2w3t_A Peptide deformylase; pr 100.0 4E-66 1.4E-70 410.3 19.2 162 2-164 1-162 (188)
6 1rl4_A Formylmethionine deform 100.0 2.5E-66 8.7E-71 411.8 17.6 163 2-164 7-172 (188)
7 2ew5_A Peptide deformylase; in 100.0 3.7E-66 1.3E-70 408.8 17.9 161 2-163 1-166 (181)
8 1ws0_A Peptide deformylase 1; 100.0 1.3E-66 4.4E-71 403.1 14.3 154 1-156 1-154 (156)
9 3e3u_A Peptide deformylase; me 100.0 1.3E-65 4.3E-70 410.7 18.6 164 1-164 1-178 (197)
10 3pn3_A Peptide deformylase 1B, 100.0 1.7E-65 5.9E-70 407.9 17.5 162 4-165 1-164 (193)
11 1lme_A PDF, peptide deformylas 100.0 1.6E-65 5.5E-70 403.2 16.0 159 3-164 13-171 (176)
12 1y6h_A Peptide deformylase; op 100.0 3.8E-66 1.3E-70 407.8 12.2 164 2-165 1-174 (177)
13 4dr9_A Peptide deformylase; hy 100.0 2.2E-65 7.4E-70 407.4 16.6 164 1-164 16-181 (192)
14 1v3y_A Peptide deformylase; pr 100.0 1.5E-64 5E-69 403.2 17.8 160 2-163 1-174 (192)
15 3dld_A Peptide deformylase; ba 100.0 6.8E-65 2.3E-69 398.7 14.8 156 2-157 1-164 (171)
16 3uwb_A RIIA-RIIB membrane-asso 100.0 6.1E-65 2.1E-69 393.0 13.9 150 3-152 2-153 (154)
17 3g5k_A Peptide deformylase, mi 100.0 3.5E-64 1.2E-68 398.5 13.9 152 1-152 2-172 (183)
18 1zxz_A PDF, peptide deformylas 100.0 1E-62 3.5E-67 393.9 14.9 152 1-152 1-171 (197)
19 2okl_A Peptide deformylase 2; 100.0 2.5E-62 8.5E-67 388.4 16.8 153 1-153 3-173 (185)
20 2os0_A Peptide deformylase; PD 100.0 3.5E-62 1.2E-66 388.4 17.2 154 1-154 2-177 (188)
21 3svj_P Peptide deformylase 3; 100.0 1.5E-61 5.1E-66 388.7 17.1 153 1-153 14-192 (203)
22 1lm4_A Peptide deformylase PDF 100.0 3E-61 1E-65 384.5 17.3 152 2-153 14-184 (194)
23 3l87_A Peptide deformylase; hy 100.0 1.1E-60 3.9E-65 390.5 17.3 153 1-153 48-227 (238)
24 2kvz_A ISPE; structural genomi 45.0 18 0.00063 24.3 3.1 25 103-127 4-30 (85)
25 2bkf_A Zinc-finger protein NBR 42.9 22 0.00074 24.2 3.2 38 89-126 24-64 (87)
26 1vd2_A Protein kinase C, IOTA 31.7 21 0.00073 24.2 1.7 27 102-128 41-67 (89)
27 2kt7_A Putative peptidoglycan 30.5 33 0.0011 23.8 2.6 22 105-126 5-28 (102)
28 3uip_D E3 SUMO-protein ligase 29.1 21 0.00073 23.1 1.3 16 132-147 49-64 (67)
29 3npp_A PFAM DUF1093 family pro 28.4 58 0.002 21.6 3.5 21 106-126 28-48 (87)
30 2k5q_A Hypothetical membrane a 27.6 57 0.0019 22.6 3.4 20 107-126 36-55 (105)
31 3lqb_A Hatching enzyme, LOC792 25.9 43 0.0015 25.7 2.8 77 23-143 29-108 (199)
32 1q1o_A Cell division control p 25.2 33 0.0011 23.7 1.8 29 105-133 55-83 (98)
33 2kkc_A Sequestosome-1; P62, PB 24.2 59 0.002 22.5 2.9 30 105-134 60-89 (102)
34 1wj6_A KIAA0049 protein, RSGI 23.2 24 0.00081 24.7 0.7 38 89-126 32-72 (101)
35 2wh0_Q Pkcev3, protein kinase 21.8 76 0.0026 16.9 2.4 25 15-39 2-26 (31)
36 4h62_V Mediator of RNA polymer 21.2 1.1E+02 0.0036 16.3 2.9 23 20-42 5-28 (31)
37 2k5w_A Hypothetical cytosolic 21.2 74 0.0025 22.6 3.0 22 106-127 33-54 (117)
No 1
>3u04_A Peptide deformylase 1; ssgcid, actinonin, ehrlichia chaffeensi structural genomics; HET: BB2; 1.70A {Ehrlichia chaffeensis} SCOP: d.167.1.0 PDB: 3oca_A
Probab=100.00 E-value=2.2e-68 Score=424.64 Aligned_cols=165 Identities=44% Similarity=0.714 Sum_probs=157.8
Q ss_pred CccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCC--------------
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKN-------------- 66 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~-------------- 66 (166)
|++++|+++|||+||++|+||+.+|+++++|++||++||++++|+||||||||+++|+||++.++.
T Consensus 3 M~i~~I~~~gdpvLr~~a~pV~~~d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~~~~ 82 (190)
T 3u04_A 3 MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPEEFEDSEDIENVEDKI 82 (190)
T ss_dssp CCCCCCCCTTCGGGGSCCBCCSCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECCC-------------C
T ss_pred CcccchhhCCCHHHhccceeCCCCCHHHHHHHHHHHHHHHHcCCeEEehhhcCCceeEEEEEcCcccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999753
Q ss_pred -----CCceEEEEeeeEEeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCC
Q psy2880 67 -----NNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNG 141 (166)
Q Consensus 67 -----~~~~~v~INP~I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 141 (166)
...+.+||||+|+..|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|
T Consensus 83 ~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~G 162 (190)
T 3u04_A 83 EGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNG 162 (190)
T ss_dssp TTCBSSEEEEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTT
T ss_pred ccccccCCCEEEECCEEEecCCCEeeccCCCCCcCCcceeeccchheEEEEECCCCCEEEEEEEChhhhhhhhHHHhcCC
Confidence 124789999999999999877899999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCHHHHHHHHHHHHhhhh
Q psy2880 142 KIFIEYLSNFKKERIIKKFLKNIK 165 (166)
Q Consensus 142 ~l~~D~~~~~~~~~~~~~~~~~~~ 165 (166)
+||+||+++.+|.++.++++|..+
T Consensus 163 iLfiDrl~~~~r~~~~~~~~k~~~ 186 (190)
T 3u04_A 163 TVFLKYLSKFKRDFAIEKVKKKER 186 (190)
T ss_dssp CCGGGGSCHHHHHHHHHHHHHHHC
T ss_pred EeeeeecCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 2
>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa} SCOP: d.167.1.1 PDB: 1s17_A* 1ix1_A* 1lry_A*
Probab=100.00 E-value=2.7e-67 Score=414.72 Aligned_cols=164 Identities=47% Similarity=0.880 Sum_probs=157.1
Q ss_pred CccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCCceEEEEeeeEEe
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIW 80 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~~ 80 (166)
|++++|+++|||+||++|+||+.+|+++++|++||++||++++|+||||||||+++|+||++.+++.+.+.+||||+|+.
T Consensus 13 ~~~~~I~~~~dpvLr~~a~~V~~~d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~vlINP~I~~ 92 (180)
T 1n5n_A 13 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINPEFEP 92 (180)
T ss_dssp CCCCCCCCTTCGGGGCBCBCCSCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECSTTSCCEEEEEEEEEEE
T ss_pred ccccceeeCCChHHhcccccCCCCCHHHHHHHHHHHHHHHHCCCeEEEhhhcCcceEEEEEEccCCCCccEEEECCEEec
Confidence 78999999999999999999999999999999999999999999999999999999999999976545689999999999
Q ss_pred ecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHHHH
Q psy2880 81 YSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKF 160 (166)
Q Consensus 81 ~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~~~ 160 (166)
.|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++.+|.++.+++
T Consensus 93 ~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~ 172 (180)
T 1n5n_A 93 LTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKL 172 (180)
T ss_dssp SCSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHBTCCGGGGSCHHHHHHHHHHH
T ss_pred CCCCEEecccCCcCcCCcceEEeccCEEEEEEECCCCCEEEEEEcCCeEEeeeehhHhhCCEeEeeecCHHHHHHHHHHH
Confidence 99997678999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhh
Q psy2880 161 LKNI 164 (166)
Q Consensus 161 ~~~~ 164 (166)
++..
T Consensus 173 ~~~~ 176 (180)
T 1n5n_A 173 EKQH 176 (180)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 3
>3qu1_A Peptide deformylase 2; structural genomics, center for structural genomics of infec diseases, csgid, metal binding; 1.80A {Vibrio cholerae} SCOP: d.167.1.0
Probab=100.00 E-value=1.2e-67 Score=414.05 Aligned_cols=163 Identities=39% Similarity=0.683 Sum_probs=155.5
Q ss_pred CccccceecCCccccccccccccCCHHHHHHHHHHHHHHhh-cCCceeecccccccccEEEEEecCCCCceEEEEeeeEE
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYH-AMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKII 79 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~-~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~ 79 (166)
|++++|+++|||+||++|+||+.+++ +++|++||++||++ ++|+||||||||+++|+||++.+++++.+.+||||+|+
T Consensus 4 M~i~~I~~~gdp~Lr~~a~pV~~~d~-l~~li~dM~eTm~~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~vlINP~I~ 82 (171)
T 3qu1_A 4 MAVLEILTAPDPRLRVQSKQVTDVAS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQPLVLINPKVV 82 (171)
T ss_dssp CCCCCCCCSSCGGGGSCCBCCSCGGG-GHHHHHHHHHHHHHSSSCCEEEGGGGTCCBCEEEECCCSSSCCCEEEEEEEEE
T ss_pred CcccceeeCCChHHhccceeCCCchH-HHHHHHHHHHHHHhcCCcEEEEccccCcceEEEEEEccCCCCccEEEECCEEE
Confidence 89999999999999999999999998 99999999999999 99999999999999999999997655568999999999
Q ss_pred eecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHHH
Q psy2880 80 WYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKK 159 (166)
Q Consensus 80 ~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~~ 159 (166)
. |++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+|.++.++
T Consensus 83 ~-~~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~ 161 (171)
T 3qu1_A 83 S-GSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKK 161 (171)
T ss_dssp E-EEEEEEEEECCTTSTTCCEEEEEEEEEEEEEECTTSCEEEEEECSTHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHH
T ss_pred e-CCCeEEcccCccCcCCccccccCchhhEEEEECCCCCEEEEEEECHHHHHHhHHHHhhCCEehhhhCCHHHHHHHHHH
Confidence 7 777767999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh
Q psy2880 160 FLKNIK 165 (166)
Q Consensus 160 ~~~~~~ 165 (166)
++|..+
T Consensus 162 ~~k~~~ 167 (171)
T 3qu1_A 162 VKKHVK 167 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 4
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A {Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A 1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A* 1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A 4al2_A 3k6l_A* 1dff_A 1def_A ...
Probab=100.00 E-value=6.1e-67 Score=409.20 Aligned_cols=162 Identities=44% Similarity=0.798 Sum_probs=154.5
Q ss_pred ccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCCceEEEEeeeEEee
Q psy2880 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIWY 81 (166)
Q Consensus 2 ~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~~~ 81 (166)
++++|+++|||+||++|.||+.+|+++++|++||++||++++|+||||||||+++|+||++..++.+.+.+||||+|+..
T Consensus 1 ~i~~I~~~gdp~Lr~~a~~V~~~d~~l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~vlINP~I~~~ 80 (168)
T 1xeo_A 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEK 80 (168)
T ss_dssp CCCCCCCTTCGGGGCCCBCCSCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTSCCCEEEEEEEEEEE
T ss_pred CCcceeeCCChHHhhccccCCCCCHHHHHHHHHHHHHHHHCCCEEEEhHhCCcceEEEEEEccCCcCccEEEECCEEecc
Confidence 47899999999999999999999999999999999999999999999999999999999998765446899999999999
Q ss_pred cceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHHHHH
Q psy2880 82 SKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFL 161 (166)
Q Consensus 82 s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~~~~ 161 (166)
|++.. .+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.++.++.++++
T Consensus 81 s~~~~-~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~ 159 (168)
T 1xeo_A 81 SGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE 159 (168)
T ss_dssp ECCBC-CEECCTTSTTCCEECCBCSEEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHH
T ss_pred CCCEE-EecCccCcCCEEEEeEcccEEEEEEECCCCCEEEEEEeCCeEEeeeehhHHhCCEEEeeeCCHHHHHHHHHHHH
Confidence 99876 89999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhh
Q psy2880 162 KNI 164 (166)
Q Consensus 162 ~~~ 164 (166)
+..
T Consensus 160 ~~~ 162 (168)
T 1xeo_A 160 KLD 162 (168)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 5
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase, metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Probab=100.00 E-value=4e-66 Score=410.33 Aligned_cols=162 Identities=44% Similarity=0.798 Sum_probs=154.5
Q ss_pred ccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCCceEEEEeeeEEee
Q psy2880 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIWY 81 (166)
Q Consensus 2 ~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~~~ 81 (166)
++++|+++|||+||++|.||+.+++++++|++||++||++++|+||||||||+++|+||++..++.+.+.+||||+|+..
T Consensus 1 ~i~~I~~~gdpvLr~~a~pV~~~d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~vlINP~I~~~ 80 (188)
T 2w3t_A 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEK 80 (188)
T ss_dssp CCCCCCCTTCGGGGCCCBCCSCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTSCCCEEEEEEEEEEE
T ss_pred CCccceeCCChHHhhcCccCCCCCHHHHHHHHHHHHHHHhCCCEEEEhHHcCcceEEEEEEccCCcCceEEEECCEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999998765456899999999999
Q ss_pred cceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHHHHH
Q psy2880 82 SKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFL 161 (166)
Q Consensus 82 s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~~~~ 161 (166)
|++.. .+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++.+|.++.++++
T Consensus 81 s~~~~-~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~ 159 (188)
T 2w3t_A 81 SGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE 159 (188)
T ss_dssp ESCEE-EEECCTTSTTCCEEEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHH
T ss_pred CCCEE-eecCccCcCCEEEEEEcccEEEEEEECCCCCEEEEEEECCeEEeeeehHHHhCCEeEeeecCHHHHHHHHHHHH
Confidence 99886 89999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhh
Q psy2880 162 KNI 164 (166)
Q Consensus 162 ~~~ 164 (166)
+..
T Consensus 160 ~~~ 162 (188)
T 2w3t_A 160 KLD 162 (188)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 6
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design, malaria, PDF, peptide DEFO plasmodium, hydrolase; HET: BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1 PDB: 1rqc_A 1jym_A
Probab=100.00 E-value=2.5e-66 Score=411.75 Aligned_cols=163 Identities=36% Similarity=0.603 Sum_probs=148.1
Q ss_pred ccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecC---CCCceEEEEeeeE
Q psy2880 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK---NNNQLQVFINPKI 78 (166)
Q Consensus 2 ~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~---~~~~~~v~INP~I 78 (166)
++++|+++|||+||++|+||+.+++++++|++||++||++++|+||||||||+++|+||++.+. ....+.+||||+|
T Consensus 7 ~i~~I~~~gdpvLr~~a~~V~~~d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~vlINP~I 86 (188)
T 1rl4_A 7 DEIKIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSI 86 (188)
T ss_dssp ---CCCCTTCGGGGSCCBCCCCCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEC-----------CEEEEEEE
T ss_pred ccCCeeeCCChHHhcccccCCCCCHHHHHHHHHHHHHHHHCCCeEEEhhhcCcceEEEEEEccccccCcccceEEECCEE
Confidence 4789999999999999999999999999999999999999999999999999999999999843 2224789999999
Q ss_pred EeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHH
Q psy2880 79 IWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIK 158 (166)
Q Consensus 79 ~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~ 158 (166)
+..|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++.+|.++.+
T Consensus 87 ~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~ 166 (188)
T 1rl4_A 87 VEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRP 166 (188)
T ss_dssp EEECSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCHHHHHHHHH
T ss_pred EecCCcEEeccccccccCCccEEEecccEEEEEEECCCCCEEEEEEeCCeEEEeEehhHhhCCEEEEeecCHHHHHHHHH
Confidence 99999987789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q psy2880 159 KFLKNI 164 (166)
Q Consensus 159 ~~~~~~ 164 (166)
++++..
T Consensus 167 ~~~~~~ 172 (188)
T 1rl4_A 167 KLNELI 172 (188)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
No 7
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A {Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Probab=100.00 E-value=3.7e-66 Score=408.80 Aligned_cols=161 Identities=36% Similarity=0.622 Sum_probs=152.1
Q ss_pred ccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCC----CCce-EEEEee
Q psy2880 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKN----NNQL-QVFINP 76 (166)
Q Consensus 2 ~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~----~~~~-~v~INP 76 (166)
++++|+++|||+||++|.||+.+|+++++|++||++||++++|+||||||||+++|+||++.+++ ...+ .+||||
T Consensus 1 ~i~~I~~~gdpvLr~~a~~V~~~d~~l~~Li~dM~eTm~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~vlINP 80 (181)
T 2ew5_A 1 ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINP 80 (181)
T ss_dssp CCCCCCCTTCGGGGCCCBCCCCCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCCTTSCCCGGGCEEEEEE
T ss_pred CCcchhcCCChHHhccccccCcCCHHHHHHHHHHHHHHHHCCCeEEEhhhcCcceEEEEEECCCcccccccCccEEEECC
Confidence 47899999999999999999999999999999999999999999999999999999999998652 2245 999999
Q ss_pred eEEeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHH
Q psy2880 77 KIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156 (166)
Q Consensus 77 ~I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~ 156 (166)
+|+ .|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+|.++
T Consensus 81 ~I~-~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~ 159 (181)
T 2ew5_A 81 KFI-ETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKF 159 (181)
T ss_dssp EEE-EEECCEEEEECCTTSTTCCEEEEECSEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCHHHHHHH
T ss_pred EEE-EcCCEEEcccCCcccCCCcceeccccEEEEEEECCCCCEEEEEEeCceEEeeeehhHHhCCEeEeeeCCHHHHHHH
Confidence 999 8988657899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy2880 157 IKKFLKN 163 (166)
Q Consensus 157 ~~~~~~~ 163 (166)
.+++++.
T Consensus 160 ~~~~~~~ 166 (181)
T 2ew5_A 160 EKELKEL 166 (181)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998874
No 8
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A {Bacillus cereus} PDB: 1ws1_A*
Probab=100.00 E-value=1.3e-66 Score=403.07 Aligned_cols=154 Identities=39% Similarity=0.636 Sum_probs=144.9
Q ss_pred CccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCCceEEEEeeeEEe
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIW 80 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~~ 80 (166)
|++++|+++|||+||++|+||+.+++++++|++||++||++++|+||||||||+++|+||++.++..+ +.+||||+|++
T Consensus 1 M~i~~I~~~gdp~Lr~~a~~V~~~d~~l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~~-~~vlINP~I~~ 79 (156)
T 1ws0_A 1 MAVLEIIKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDVDDDTG-KIELINPSILE 79 (156)
T ss_dssp CCCCCCCCSSCGGGGSCCBCCCCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTTC-EEEEEEEEEEE
T ss_pred CCccccccCCChHHhhccccCCCCCHHHHHHHHHHHHHHHHCCCEEEEhHHcCcceeEEEEEccCCcC-cEEEECCEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999999876433 59999999999
Q ss_pred ecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHH
Q psy2880 81 YSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERI 156 (166)
Q Consensus 81 ~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~ 156 (166)
.|++. ..+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+|.++
T Consensus 80 ~s~~~-~~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~ 154 (156)
T 1ws0_A 80 KRGEQ-VGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVTRYYEENE 154 (156)
T ss_dssp EEEEE-EEEECCTTSTTCCEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTEEEECC---
T ss_pred cCCCE-EeccCCcccCCeeeEeecccEEEEEEECCCCCEEEEEEeCceEEEeEehhHhhCCEeeeeEcCHHHHHHh
Confidence 99887 5899999999999999999999999999999999999999999999999999999999999998877654
No 9
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.3e-65 Score=410.73 Aligned_cols=164 Identities=30% Similarity=0.437 Sum_probs=152.6
Q ss_pred CccccceecCCccccccccccc-----cCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCC--C--CceE
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPIT-----EFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKN--N--NQLQ 71 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~-----~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~--~--~~~~ 71 (166)
|++++|+++|||+||++|+||+ .+++++++|++||++||++++|+||||||||+++|+||++.+++ + ..+.
T Consensus 1 M~i~~I~~~gdpvLr~~a~~V~~~~~~~~~~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~ 80 (197)
T 3e3u_A 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRG 80 (197)
T ss_dssp -CCCCEECTTCGGGSSCCBCCCCCTTSCCCTTHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTBCTTSCSEE
T ss_pred CCcceeecCCCHHHhcCceeCcccccCCCCHHHHHHHHHHHHHHHHCCCeEEEccccCcceEEEEEEcCcccccccccce
Confidence 8999999999999999999999 99999999999999999999999999999999999999999753 1 2589
Q ss_pred EEEeeeEEeecceE-----EcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeec
Q psy2880 72 VFINPKIIWYSKEK-----QIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIE 146 (166)
Q Consensus 72 v~INP~I~~~s~~~-----~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D 146 (166)
+||||+|+..++.. ...+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+|
T Consensus 81 vlINP~I~~~~~~~~~~e~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiD 160 (197)
T 3e3u_A 81 VVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLD 160 (197)
T ss_dssp EEEEEEEEESCCCCSCCCTTTCEEECTTSTTCEEECCCCSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGG
T ss_pred EEEcCEEEccCcceeccccccccCCCCCcCCCceeccCCCeEEEEEECCCCCEEEEEEEChhhhhhhhhhHhhCCEeehe
Confidence 99999999654432 3689999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhh
Q psy2880 147 YLSNFKKERIIKKFLKNI 164 (166)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~ 164 (166)
|+++.+|.++.+++++..
T Consensus 161 rl~~~~r~~~~~~~~k~~ 178 (197)
T 3e3u_A 161 RLIGRYARNAKRAVKSHG 178 (197)
T ss_dssp GCCHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHHhcc
Confidence 999999999999998864
No 10
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision pathway, N induced-FIT, hydrolase-hydrolase inhibitor complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB: 3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A 3pn6_A 3m6r_A 3cpm_A
Probab=100.00 E-value=1.7e-65 Score=407.93 Aligned_cols=162 Identities=35% Similarity=0.585 Sum_probs=153.7
Q ss_pred ccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCC--CceEEEEeeeEEee
Q psy2880 4 LPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNN--NQLQVFINPKIIWY 81 (166)
Q Consensus 4 ~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~v~INP~I~~~ 81 (166)
++|++||||+||++|.||+.+++++++|++||++||++++|+||||||||+++|+||++.++.. ..+.+||||+|++.
T Consensus 1 ~~I~~~gdpvLr~~a~~V~~~d~~l~~Li~dM~eTM~~a~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~vlINP~I~~~ 80 (193)
T 3pn3_A 1 MEIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKY 80 (193)
T ss_dssp CCCCCTTCGGGTSCCBCCCCCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECTTCSTTSSCCEEEEEEEEEEE
T ss_pred CcEEECCCHHHHhcCccCCCCCHHHHHHHHHHHHHHHHCCCeEEEccccCcceEEEEEECCCCcCCcccEEEECCEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999986432 35899999999999
Q ss_pred cceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHHHHH
Q psy2880 82 SKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFL 161 (166)
Q Consensus 82 s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~~~~ 161 (166)
|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++.+|.++.++++
T Consensus 81 s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~kr~~~~~k~~ 160 (193)
T 3pn3_A 81 SDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELE 160 (193)
T ss_dssp CSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHTTHHHHH
T ss_pred CCcEEEeecccccCCCCCCcCcCCCEEEEEEEcCCCCEEEEEEEChhhhhhhHHHHHhCCEeeeeecCHHHHHHHHHHHH
Confidence 99987899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhh
Q psy2880 162 KNIK 165 (166)
Q Consensus 162 ~~~~ 165 (166)
|..+
T Consensus 161 k~~~ 164 (193)
T 3pn3_A 161 ALEK 164 (193)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 11
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.167.1.1
Probab=100.00 E-value=1.6e-65 Score=403.17 Aligned_cols=159 Identities=43% Similarity=0.640 Sum_probs=140.3
Q ss_pred cccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCCceEEEEeeeEEeec
Q psy2880 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIWYS 82 (166)
Q Consensus 3 ~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~~~s 82 (166)
.++|+.+|||+||++|+||+.+|+++++|++||++||++++|+||||||||+++|+||++..+ .+.+||||+|++.|
T Consensus 13 ~~~I~~~gdpvLr~~a~~V~~~d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~vid~~~---~~~vlINP~I~~~s 89 (176)
T 1lme_A 13 MYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN---GPVAVINPEILEID 89 (176)
T ss_dssp SCCCCCTTCGGGTSCCBCCCBCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECSSS---CCEEEEEEEEEEEC
T ss_pred cccceECCCHHHhcCcccCCcCCHHHHHHHHHHHHHHHHCCCeEEEehhcCcceEEEEEEcCC---ceEEEECCEEEccC
Confidence 579999999999999999999999999999999999999999999999999999999998854 37999999999999
Q ss_pred ceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHHHHHh
Q psy2880 83 KEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162 (166)
Q Consensus 83 ~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~~~~~ 162 (166)
++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++.+|.++.+++++
T Consensus 90 ~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~ 169 (176)
T 1lme_A 90 PETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMD 169 (176)
T ss_dssp SCEEEEEECCTTSTTCCEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBCC------------
T ss_pred CcEEeccCCccCcCCcceEEecCCEEEEEEECCCCCEEEEEEeCCeEEEeeehhHhhCCEeeeeeCCHHHHHHHHHHHHH
Confidence 99877899999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hh
Q psy2880 163 NI 164 (166)
Q Consensus 163 ~~ 164 (166)
..
T Consensus 170 ~~ 171 (176)
T 1lme_A 170 IA 171 (176)
T ss_dssp --
T ss_pred HH
Confidence 53
No 12
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase; 2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB: 1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Probab=100.00 E-value=3.8e-66 Score=407.77 Aligned_cols=164 Identities=34% Similarity=0.546 Sum_probs=153.5
Q ss_pred ccccceecCCcccccccccccc--C-CHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCC-------CceE
Q psy2880 2 TLLPIIYYPDIRLKKIAEPITE--F-DINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNN-------NQLQ 71 (166)
Q Consensus 2 ~~~~I~~~~dp~Lr~~~~~V~~--~-~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~-------~~~~ 71 (166)
++++|+++|||+||++|+||+. + ++++++|++||++||++++|+||||||||+++|+||++.++.. ..+.
T Consensus 1 ~i~~I~~~gdpvLr~~a~~V~~~~~~~~~l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~~ 80 (177)
T 1y6h_A 1 SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPER 80 (177)
T ss_dssp CCCCCCCTTCGGGGSCCBCCCGGGTTSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCSSCTTSTTSCCCCCE
T ss_pred CCcCceeCCChHHhcCcccccccCCCCHHHHHHHHHHHHHHHHCCCeEEEehhcCCceeEEEEEccCccccccccccCcE
Confidence 4789999999999999999998 8 8999999999999999999999999999999999999986431 1368
Q ss_pred EEEeeeEEeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHH
Q psy2880 72 VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNF 151 (166)
Q Consensus 72 v~INP~I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~ 151 (166)
+||||+|+..|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++.
T Consensus 81 vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~ 160 (177)
T 1y6h_A 81 IILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDT 160 (177)
T ss_dssp EEEEEEEEECCSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBSCT
T ss_pred EEECCEEEEcCCCEEecccCCcccCCeeeeeeccceEEEEEECCCCCEEEEEEeCceeEehhhhHHHhCCEeeeeecChh
Confidence 99999999999998778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy2880 152 KKERIIKKFLKNIK 165 (166)
Q Consensus 152 ~~~~~~~~~~~~~~ 165 (166)
++..+.+++++..+
T Consensus 161 ~~~~~~~~~~~~~~ 174 (177)
T 1y6h_A 161 KLFGFNETLDSSHN 174 (177)
T ss_dssp TSEEEHHHHHHHSC
T ss_pred hhHHHHHHHHHhhc
Confidence 99888888888654
No 13
>4dr9_A Peptide deformylase; hydrolase-hydrolase inhibitor complex; HET: BB2; 1.90A {Synechococcus elongatus}
Probab=100.00 E-value=2.2e-65 Score=407.41 Aligned_cols=164 Identities=35% Similarity=0.561 Sum_probs=152.7
Q ss_pred CccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCC--CceEEEEeeeE
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNN--NQLQVFINPKI 78 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~v~INP~I 78 (166)
|++++|++||||+||++|+||+.+++++++|++||++||++++|+||||||||+++|+||++..+++ ..+.+||||+|
T Consensus 16 ~~i~~I~~~gdpvLr~~a~~V~~~d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~vlINP~I 95 (192)
T 4dr9_A 16 KPPLDLHYLGDRVLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKI 95 (192)
T ss_dssp SCSSCCCCTTCGGGGSCCCCCCCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCSSEEEECCCC-----CCEEEEEEEE
T ss_pred ccCceeEeCCCHHHhhCcccCCCCCHHHHHHHHHHHHHHHHcCCeEEechhcCCceeEEEEEcCccccCcccEEEECCEE
Confidence 4689999999999999999999999999999999999999999999999999999999999987532 35889999999
Q ss_pred EeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHHHHHHH
Q psy2880 79 IWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIK 158 (166)
Q Consensus 79 ~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~~~~~~ 158 (166)
+..|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++..+.....
T Consensus 96 ~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~ 175 (192)
T 4dr9_A 96 ERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLELNEAL 175 (192)
T ss_dssp EEEEEEEEEEEECCTTSTTCCEEEEEEEEEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGCCCHHHHHHHH
T ss_pred EECCCCEeeccCCCCCcCCeeeEecccceEEEEEECCCCCEEEEEEEChhhhhhhhHhHhhCCEeeEEEeCcHHHHHHHH
Confidence 99999887899999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred HHHhhh
Q psy2880 159 KFLKNI 164 (166)
Q Consensus 159 ~~~~~~ 164 (166)
+++...
T Consensus 176 ~~~~~~ 181 (192)
T 4dr9_A 176 DKKGFA 181 (192)
T ss_dssp HHTTCC
T ss_pred HHhccc
Confidence 766543
No 14
>1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP: d.167.1.1
Probab=100.00 E-value=1.5e-64 Score=403.17 Aligned_cols=160 Identities=35% Similarity=0.611 Sum_probs=147.4
Q ss_pred ccccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEE-EecCCC------------C
Q psy2880 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL-DISKNN------------N 68 (166)
Q Consensus 2 ~~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi-~~~~~~------------~ 68 (166)
++++|+++|||+||++|.||+.+ +++++|++||++||++++|+||||||||+++|+||+ +.++.. .
T Consensus 1 mi~~I~~~gdpvLr~~a~~V~~~-~~l~~li~dM~eTM~~~~GvGLAApQIGv~~ri~Vi~d~~~~~~~~~~~~~~~~~~ 79 (192)
T 1v3y_A 1 MVYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVR 79 (192)
T ss_dssp CCCCCCCTTCGGGGSCCBCCCCC-TTHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEC------------CTTTCS
T ss_pred CccCceeCCChHHhccCccCCCc-HHHHHHHHHHHHHHHhCCCcEEEecccCcceEEEEEEccCcccccccccccccccc
Confidence 47899999999999999999988 589999999999999999999999999999999999 775422 2
Q ss_pred ceEEEEeeeEEeecceEEcCeecCcccCCCCc-cccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeecc
Q psy2880 69 QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFN-KIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEY 147 (166)
Q Consensus 69 ~~~v~INP~I~~~s~~~~~~~EgCLS~p~~~~-~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~ 147 (166)
.+.+||||+|+..|++.. .+|||||+||+++ .|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||
T Consensus 80 ~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDr 158 (192)
T 1v3y_A 80 RVYVVANPVITYREGLVE-GTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFER 158 (192)
T ss_dssp CEEEEEEEEEEEEECCEE-EEECCTTSTTCCEEEEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGG
T ss_pred CceEEECCEEEEcCCcEE-EeCCCCCcCCEecccccccCEEEEEEECCCCCEEEEEEeccEEEEeehhhHhhCCEeEEEe
Confidence 578999999999999886 8999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q psy2880 148 LSNFKKERIIKKFLKN 163 (166)
Q Consensus 148 ~~~~~~~~~~~~~~~~ 163 (166)
+++.++..+.++|++.
T Consensus 159 l~~~~r~~~~~~~~~~ 174 (192)
T 1v3y_A 159 LPKPKREAFLEANRAE 174 (192)
T ss_dssp SCHHHHHHHHHHTHHH
T ss_pred cCHhHhHHHHHHHHHH
Confidence 9999999998887663
No 15
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas oryzae PV} SCOP: d.167.1.0
Probab=100.00 E-value=6.8e-65 Score=398.67 Aligned_cols=156 Identities=33% Similarity=0.472 Sum_probs=146.0
Q ss_pred ccccceecCCccccccccccccCC-HHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCC-------CceEEE
Q psy2880 2 TLLPIIYYPDIRLKKIAEPITEFD-INLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNN-------NQLQVF 73 (166)
Q Consensus 2 ~~~~I~~~~dp~Lr~~~~~V~~~~-~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~-------~~~~v~ 73 (166)
++++|+++|||+||++|+||+.++ +++++|++||++||++++|+||||||||+++|+||++.++++ ..+.+|
T Consensus 1 ~i~~I~~~gdpvLr~~a~~V~~~~~~~l~~li~dM~eTm~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~~vl 80 (171)
T 3dld_A 1 MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTAL 80 (171)
T ss_dssp CCCCCCCTTCGGGGSCCCCCCCTTCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCSSEEEEEESSCSSSCSCCCEEEEEE
T ss_pred CCcchhhCCChHHhccCeeCCCCCCHHHHHHHHHHHHHHHHcCCEEEEccccCCceeEEEEEcccccccccccccCCEEE
Confidence 478999999999999999999984 999999999999999999999999999999999999997532 147899
Q ss_pred EeeeEEeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHHH
Q psy2880 74 INPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKK 153 (166)
Q Consensus 74 INP~I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~~ 153 (166)
|||+|+..|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+|
T Consensus 81 INP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~kr 160 (171)
T 3dld_A 81 ANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDT 160 (171)
T ss_dssp EEEEEEESSSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCSCGGG
T ss_pred ECCEEEEcCCceeecCCCccccCCceEeeeCChhcEEEEECCCCCEEEEEEeChhhhhhhhHhHhcCCEeehhcCCHHHh
Confidence 99999999999878999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHH
Q psy2880 154 ERII 157 (166)
Q Consensus 154 ~~~~ 157 (166)
..+.
T Consensus 161 ~~~~ 164 (171)
T 3dld_A 161 FGFD 164 (171)
T ss_dssp CEET
T ss_pred hhhH
Confidence 6443
No 16
>3uwb_A RIIA-RIIB membrane-associated protein; actinonin, probable peptide deformylase hydrolase-antibiotic complex; HET: BB2; 1.70A {Synechococcus phage s-ssm7} PDB: 3uwa_A*
Probab=100.00 E-value=6.1e-65 Score=392.97 Aligned_cols=150 Identities=35% Similarity=0.587 Sum_probs=140.9
Q ss_pred cccceecCCccccccccccccCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCC--CceEEEEeeeEEe
Q psy2880 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNN--NQLQVFINPKIIW 80 (166)
Q Consensus 3 ~~~I~~~~dp~Lr~~~~~V~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~v~INP~I~~ 80 (166)
+++|+++|||+||++|+||+.+++++++|++||++||++++|+||||||||+++|+||++..+++ ..+.+||||+|++
T Consensus 2 ~~~I~~~gdpvLr~~a~~V~~~d~~l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vi~~~~~~~~~~~~v~INP~I~~ 81 (154)
T 3uwb_A 2 SLKIKTIGDRCLRQKSEEVEFDKKEMSELYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITW 81 (154)
T ss_dssp CCCCCCTTCGGGTSCCBCCCCCHHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECCBTTTBSCEEEEEEEEEEE
T ss_pred CccEEECCCHHHhccceeCCcCCHHHHHHHHHHHHHHHHCCCcEEEccccCccEEEEEEEccccccCcccEEEECCEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999997522 2589999999999
Q ss_pred ecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCceeeccCCHHH
Q psy2880 81 YSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFK 152 (166)
Q Consensus 81 ~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~D~~~~~~ 152 (166)
.|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++..
T Consensus 82 ~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~e 153 (154)
T 3uwb_A 82 KSEEKVLFDEGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYFNDKE 153 (154)
T ss_dssp ECSCEEEEEEEETTEEEEEEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGCC---
T ss_pred CCCcEEecccCccCcCCcceeccCcceeEEEEECCCCCEEEEEEEChhhhhhhhHHHhhCCEeeeEEeCCcC
Confidence 999987789999999999999999999999999999999999999999999999999999999999999754
No 17
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron, metal-bindi mitochondrion, protein biosynthesis, transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Probab=100.00 E-value=3.5e-64 Score=398.50 Aligned_cols=152 Identities=26% Similarity=0.455 Sum_probs=142.2
Q ss_pred CccccceecCCcccccccccccc---CCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCC----------
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPITE---FDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNN---------- 67 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~~---~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~---------- 67 (166)
|++++|+++|||+||++|+||+. +++++++|++||++||++++|+||||||||+++|+||++.++..
T Consensus 2 M~~~~I~~~gdpvLr~~a~~V~~~~~~~~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~ 81 (183)
T 3g5k_A 2 MSFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQRA 81 (183)
T ss_dssp CCCCCCCCTTCGGGTSCCBCCCGGGTTCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHTSCHHHHH
T ss_pred CcccceeecCChHHhcCCeeCCcccCCCHHHHHHHHHHHHHHHHcCCeEEeccccCCceeEEEEEcCccccccccccccc
Confidence 89999999999999999999985 47999999999999999999999999999999999999985421
Q ss_pred -----C-ceEEEEeeeEEeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCC
Q psy2880 68 -----N-QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNG 141 (166)
Q Consensus 68 -----~-~~~v~INP~I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 141 (166)
. ++.+||||+|+..|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|
T Consensus 82 ~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~G 161 (183)
T 3g5k_A 82 LRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQG 161 (183)
T ss_dssp HHTCCCEEEEEEEEEEEEEEEEEEEEEEECCTTSTTEEEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred cccccccCceEEECCeEEecCCCEEecccCccCcCCccEEeeCcceeEEEEECCCCCEEEEEEeChhheehhhHHHHhCC
Confidence 1 3579999999999988878999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCHHH
Q psy2880 142 KIFIEYLSNFK 152 (166)
Q Consensus 142 ~l~~D~~~~~~ 152 (166)
+||+||+++..
T Consensus 162 iLfiDrl~~~s 172 (183)
T 3g5k_A 162 CLFIDKMDSRT 172 (183)
T ss_dssp CCGGGTSCGGG
T ss_pred EeEEEEeCHHH
Confidence 99999999753
No 18
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A
Probab=100.00 E-value=1e-62 Score=393.94 Aligned_cols=152 Identities=32% Similarity=0.493 Sum_probs=140.7
Q ss_pred CccccceecCCcccccccccccc--C-CHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecC------------
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPITE--F-DINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK------------ 65 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~~--~-~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~------------ 65 (166)
|++++|+++|||+||++|+||+. + ++++++|++||++||++++|+||||||||+++|+||++..+
T Consensus 1 M~~~~I~~~gdpvLr~~a~~V~~~~~~~~~l~~Li~dM~eTM~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~ 80 (197)
T 1zxz_A 1 MDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEIL 80 (197)
T ss_dssp -CCCCCCCTTSGGGTSCCBCCCTTTTTSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHSSCHHHHH
T ss_pred CCccCcccCCCHHHhcCceeCCcccCCCHHHHHHHHHHHHHHHhCCCcEEEccccCcceEEEEEEcCccccccccccccc
Confidence 89999999999999999999986 5 58999999999999999999999999999999999999742
Q ss_pred --CCC--ceEEEEeeeEEeecceEEcCeecCcccCCCCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCC
Q psy2880 66 --NNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNG 141 (166)
Q Consensus 66 --~~~--~~~v~INP~I~~~s~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 141 (166)
+.. .+.+||||+|+..|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|
T Consensus 81 ~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~G 160 (197)
T 1zxz_A 81 AQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDG 160 (197)
T ss_dssp HTTCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCceEEECCEEEecCCCEEeeeeCCcccCCeeeeEecccEEEEEEECCCCCEEEEEEeChhhhHHHHHHHHhCC
Confidence 111 3589999999999998777899999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCHHH
Q psy2880 142 KIFIEYLSNFK 152 (166)
Q Consensus 142 ~l~~D~~~~~~ 152 (166)
+||+||+++..
T Consensus 161 iLfiDrl~~~~ 171 (197)
T 1zxz_A 161 NLYVDKMVPRT 171 (197)
T ss_dssp CCGGGTBCTTC
T ss_pred EeeeeecCHHH
Confidence 99999999743
No 19
>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A {Bacillus cereus} PDB: 1lqy_A*
Probab=100.00 E-value=2.5e-62 Score=388.40 Aligned_cols=153 Identities=32% Similarity=0.474 Sum_probs=141.8
Q ss_pred CccccceecCCccccccccccc-cCCHHHHHHHHHHHHHHhh------------cCCceeecccccccccEEEEEecCCC
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPIT-EFDINLKKIIFNMTETMYH------------AMGIGLAASQVDIHKQLLILDISKNN 67 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~-~~~~~~~~li~~m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~~ 67 (166)
|++++|+++|||+||++|+||+ .+++++++|++||++||++ ++|+||||||||+++|+||++.++++
T Consensus 3 ~~~~~I~~~gdpvLr~~a~~V~~~~~~~l~~li~dM~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~ 82 (185)
T 2okl_A 3 LTMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKKMIAVHVTDAD 82 (185)
T ss_dssp CCGGGCCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHTSHHHHHHTTCCCCSEEEGGGGTCCBSEEEEEEECTT
T ss_pred cccCcceeCCChHHhcCceeCCCCCCHHHHHHHHHHHHHHHhhhhcchhccccCCCeEEEEhhhcCcCeeEEEEEccCcc
Confidence 6789999999999999999999 5999999999999999964 58999999999999999999997542
Q ss_pred --CceEEEEeeeEEeecceEE--cCeecCcccCC-CCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCc
Q psy2880 68 --NQLQVFINPKIIWYSKEKQ--IYNEGCLSLPG-IFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGK 142 (166)
Q Consensus 68 --~~~~v~INP~I~~~s~~~~--~~~EgCLS~p~-~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~ 142 (166)
..+.+||||+|++.|++.. ..+|||||+|| +++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+
T Consensus 83 ~~~~~~vlINP~I~~~s~~~~~~~~~EGCLSvPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~Gi 162 (185)
T 2okl_A 83 GTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGV 162 (185)
T ss_dssp CCEEEEEEEEEEEEEECSSEEECTTCCCCTTCCSCCCSCCCEESEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTTC
T ss_pred CCccceEEECCEEEccCCcCccCCCCccCccccCeeeEEeecccEEEEEEECCCCCEEEEEEeCceEEehhhhHHHhCCE
Confidence 2468999999999999875 46999999997 999999999999999999999999999999999999999999999
Q ss_pred eeeccCCHHHH
Q psy2880 143 IFIEYLSNFKK 153 (166)
Q Consensus 143 l~~D~~~~~~~ 153 (166)
||+||+++..+
T Consensus 163 LfiDrl~~~~~ 173 (185)
T 2okl_A 163 MFYDHINKENP 173 (185)
T ss_dssp CGGGGSCSSCT
T ss_pred eeeeecCccCC
Confidence 99999997654
No 20
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A
Probab=100.00 E-value=3.5e-62 Score=388.42 Aligned_cols=154 Identities=27% Similarity=0.409 Sum_probs=141.2
Q ss_pred CccccceecCCccccccccccc-cCCHHHHHHHHHHHHHHhh------------cCCceeecccccccccEEEEEecC-C
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPIT-EFDINLKKIIFNMTETMYH------------AMGIGLAASQVDIHKQLLILDISK-N 66 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~-~~~~~~~~li~~m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~-~ 66 (166)
|++++|+++|||+||++|+||+ .+++++++|++||++||++ ++|+||||||||+++|+||++.++ .
T Consensus 2 ~~~~~I~~~gdpvLr~~a~~V~~~~~~~l~~li~dM~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~ 81 (188)
T 2os0_A 2 ITMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGLAAPQLDISKRIIAVHVPSND 81 (188)
T ss_dssp CCGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEECC--
T ss_pred CccCcceeCCChHHhcCceeCCCCCCHHHHHHHHHHHHHHHhhhhcchhcccccCCcEEEEhhhcCcceeEEEEECCCcc
Confidence 6789999999999999999999 5999999999999999964 589999999999999999999965 2
Q ss_pred --C---CceEEEEeeeEEeecceEE--cCeecCcccCC-CCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhh
Q psy2880 67 --N---NQLQVFINPKIIWYSKEKQ--IYNEGCLSLPG-IFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDH 138 (166)
Q Consensus 67 --~---~~~~v~INP~I~~~s~~~~--~~~EgCLS~p~-~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDH 138 (166)
+ ..+.+||||+|++.|++.. ..+|||||+|| +++.|+||.+|+|+|+|++|++++++++||+|||||||+||
T Consensus 82 ~~~~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLSvPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDH 161 (188)
T 2os0_A 82 PENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDH 161 (188)
T ss_dssp -------EEEEEEEEEEEEECSCEEEETTCCCCTTCCSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHH
T ss_pred cccccccccEEEEcCEEEecCCcEecCCCCcCcceECCCeEEEeecccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHH
Confidence 1 1368999999999999875 57999999997 99999999999999999999999999999999999999999
Q ss_pred hCCceeeccCCHHHHH
Q psy2880 139 LNGKIFIEYLSNFKKE 154 (166)
Q Consensus 139 L~G~l~~D~~~~~~~~ 154 (166)
|+|+||+||+++..+.
T Consensus 162 L~GiLfiDrl~~~~~~ 177 (188)
T 2os0_A 162 INGIMFYDHINKENPF 177 (188)
T ss_dssp HTTCCGGGGSCSSSTT
T ss_pred hCCEeeeEEcCCcCCc
Confidence 9999999999976543
No 21
>3svj_P Peptide deformylase 3; alpha-beta, metal binding protein, HYDR hydrolase inhibitor complex; HET: 4LI; 1.55A {Streptococcus pneumoniae} SCOP: d.167.1.1 PDB: 3str_P* 3sw8_P* 4eox_P* 1lm6_A 2aia_A* 2ai7_A* 2aie_P* 2os3_A*
Probab=100.00 E-value=1.5e-61 Score=388.68 Aligned_cols=153 Identities=28% Similarity=0.422 Sum_probs=140.5
Q ss_pred CccccceecCCccccccccccc-cCCHHHHHHHHHHHHHHhhc------------CCceeecccccccccEEEEEecCC-
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPIT-EFDINLKKIIFNMTETMYHA------------MGIGLAASQVDIHKQLLILDISKN- 66 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~-~~~~~~~~li~~m~~tm~~~------------~gvGLAApQIG~~~ri~vi~~~~~- 66 (166)
|++++|+++|||+||++|+||+ .+++++++|++||++||+++ +|+||||||||+++|+||++.++.
T Consensus 14 ~~~~~Iv~~gdpvLr~~a~~V~~~~~~~l~~Li~dM~eTM~~~~d~~~~~~~~~~~GVGLAApQIGv~~Ri~Vid~~~~~ 93 (203)
T 3svj_P 14 IDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIV 93 (203)
T ss_dssp CCGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHTSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECC-
T ss_pred ceecCeeeCCCHHHhhCceeCCCCCCHHHHHHHHHHHHHHHHhccchhhhccccCCcEEEeccccCCceeEEEEEcCccc
Confidence 4589999999999999999999 48999999999999999984 699999999999999999999763
Q ss_pred ------CC---ceEEEEeeeEEeecceEE--cCeecCcccC-CCCccccccCceEEEEECCCCCEEEEEEechhhhHHHH
Q psy2880 67 ------NN---QLQVFINPKIIWYSKEKQ--IYNEGCLSLP-GIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQH 134 (166)
Q Consensus 67 ------~~---~~~v~INP~I~~~s~~~~--~~~EgCLS~p-~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QH 134 (166)
++ .+.+||||+|+..|++.. ..+|||||+| |+++.|+||.+|+|+|+|++|++++++++||+|||+||
T Consensus 94 ~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQH 173 (203)
T 3svj_P 94 EEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQH 173 (203)
T ss_dssp --------CEEEEEEEEEEEEEEECSSEEEETTCCCCTTCCSCCCSCBCEESSEEEEEECTTSCEEEEEECHHHHHHHHH
T ss_pred cccccccccCcccEEEECCEEEecCCceeccccccCccCcCCCcEEEecCcceeEEEEECCCCCEEEEEEEChhhhhhhh
Confidence 22 368999999999998764 4799999999 69999999999999999999999999999999999999
Q ss_pred HhhhhCCceeeccCCHHHH
Q psy2880 135 EIDHLNGKIFIEYLSNFKK 153 (166)
Q Consensus 135 EiDHL~G~l~~D~~~~~~~ 153 (166)
|+|||+|+||+||+++..+
T Consensus 174 EiDHL~GiLfiDrl~~~~~ 192 (203)
T 3svj_P 174 EIDHINGIMFYDRINEKDP 192 (203)
T ss_dssp HHHHHTTCCGGGGBCSSCT
T ss_pred HhHhcCCEeeeeEcCCcCc
Confidence 9999999999999997654
No 22
>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus} SCOP: d.167.1.1 PDB: 1lqw_A 2ai9_A 1lmh_A 1q1y_A*
Probab=100.00 E-value=3e-61 Score=384.45 Aligned_cols=152 Identities=31% Similarity=0.487 Sum_probs=140.7
Q ss_pred ccccceecCCccccccccccc-cCCHHHHHHHHHHHHHHhh------------cCCceeecccccccccEEEEEecCC--
Q psy2880 2 TLLPIIYYPDIRLKKIAEPIT-EFDINLKKIIFNMTETMYH------------AMGIGLAASQVDIHKQLLILDISKN-- 66 (166)
Q Consensus 2 ~~~~I~~~~dp~Lr~~~~~V~-~~~~~~~~li~~m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~-- 66 (166)
++++|+++|||+||++|+||+ ++++++++|++||++||++ ++|+||||||||+++|+||++.++.
T Consensus 14 ~~~~I~~~gdpvLr~~a~~V~~~~~~~l~~li~dM~eTM~~~~~~~~~~~y~~~~GVGLAApQIGv~~Ri~vid~~~~~~ 93 (194)
T 1lm4_A 14 TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGS 93 (194)
T ss_dssp CGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCCSS
T ss_pred cccCeEeCCCHHHhcEeeeCCCCCCHHHHHHHHHHHHHHHhhhhcchhhhcccCCceEEEecccCcceeEEEEEcCCccc
Confidence 578999999999999999999 5999999999999999964 5899999999999999999999653
Q ss_pred -CCceEEEEeeeEEeecceEE--cCeecCcccCC-CCccccccCceEEEEECCCCCEEEEEEechhhhHHHHHhhhhCCc
Q psy2880 67 -NNQLQVFINPKIIWYSKEKQ--IYNEGCLSLPG-IFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGK 142 (166)
Q Consensus 67 -~~~~~v~INP~I~~~s~~~~--~~~EgCLS~p~-~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~ 142 (166)
...+.+||||+|++.|++.. ..+|||||+|| +++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+
T Consensus 94 ~~~~~~vlINP~Ii~~s~e~~~~~~~EGCLSvPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~Gi 173 (194)
T 1lm4_A 94 GKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGV 173 (194)
T ss_dssp SCCEEEEEEEEEEEEECSSEEECTTCCCCTTCSSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTC
T ss_pred cccccEEEECCEEEecCCcEecCCCCcCCceECCceeEEeccccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHHhCCE
Confidence 23478999999999999875 46999999997 999999999999999999999999999999999999999999999
Q ss_pred eeeccCCHHHH
Q psy2880 143 IFIEYLSNFKK 153 (166)
Q Consensus 143 l~~D~~~~~~~ 153 (166)
||+||+++..+
T Consensus 174 LfiDrl~~~~~ 184 (194)
T 1lm4_A 174 MFYDHIDKNHP 184 (194)
T ss_dssp CGGGGCCSSST
T ss_pred eeeeecCcccC
Confidence 99999998665
No 23
>3l87_A Peptide deformylase; hydrolase, iron, metal-binding, PR biosynthesis; 2.00A {Streptococcus mutans}
Probab=100.00 E-value=1.1e-60 Score=390.55 Aligned_cols=153 Identities=26% Similarity=0.387 Sum_probs=140.9
Q ss_pred CccccceecCCccccccccccc-cCCHHHHHHHHHHHHHHhhc------------CCceeecccccccccEEEEEecCC-
Q psy2880 1 MTLLPIIYYPDIRLKKIAEPIT-EFDINLKKIIFNMTETMYHA------------MGIGLAASQVDIHKQLLILDISKN- 66 (166)
Q Consensus 1 M~~~~I~~~~dp~Lr~~~~~V~-~~~~~~~~li~~m~~tm~~~------------~gvGLAApQIG~~~ri~vi~~~~~- 66 (166)
|++++|+++|||+||++|+||+ .+++++++|++||++||+++ +|+||||||||+++|+|||+.++.
T Consensus 48 ~~~~~Iv~~gdPvLR~~a~pV~~~~d~el~~Li~DM~eTM~~a~d~~~~~~~~~a~GVGLAAPQIGv~kRi~Vid~~~~~ 127 (238)
T 3l87_A 48 IDMNDIIREGHPTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRIIAVLIPNPE 127 (238)
T ss_dssp CCTTSSCCTTCGGGTSCCBCCCSSCCHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECCC
T ss_pred ccccCeeeCCCHHHhhccccCCCCCCHHHHHHHHHHHHHHHHhccchhhhhcccCCceEEeccccCCceeEEEEEcCccc
Confidence 4589999999999999999999 49999999999999999974 799999999999999999999753
Q ss_pred -------CC---ceEEEEeeeEEeecceEE--cCeecCcccC-CCCccccccCceEEEEECCCCCEEEEEEechhhhHHH
Q psy2880 67 -------NN---QLQVFINPKIIWYSKEKQ--IYNEGCLSLP-GIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQ 133 (166)
Q Consensus 67 -------~~---~~~v~INP~I~~~s~~~~--~~~EgCLS~p-~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~Q 133 (166)
++ .+.+||||+|+..|++.. ..+|||||+| |+++.|+||.+|+|+|+|++|++++++++||+|||||
T Consensus 128 ~~~~~~~~~~~~~~~vlINP~Ii~~s~e~~~~~~~EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~lAr~iQ 207 (238)
T 3l87_A 128 DKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGCLSVDRVVEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQ 207 (238)
T ss_dssp C----CCSSSEEEEEEEEEEEEEEECSSEEEETTCCCCTTCCSCCCSCBCEESCEEEEEECTTCCEEEEEECHHHHHHHH
T ss_pred ccccccccccCcccEEEECCEEEeccCceecccccCCCcccCCCccEEecChhheEEEEECCCCCEEEEEEeChhhhHHh
Confidence 12 268999999999998764 4799999999 7999999999999999999999999999999999999
Q ss_pred HHhhhhCCceeeccCCHHHH
Q psy2880 134 HEIDHLNGKIFIEYLSNFKK 153 (166)
Q Consensus 134 HEiDHL~G~l~~D~~~~~~~ 153 (166)
||+|||+|+||+||+++..+
T Consensus 208 HEiDHLdGiLfiDrls~~~~ 227 (238)
T 3l87_A 208 HEIDHTNGIMFFDRINEKNP 227 (238)
T ss_dssp HHHHHHTTCCGGGGBCSSCT
T ss_pred HHhHhcCCEeeeeecCCCCC
Confidence 99999999999999997655
No 24
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=45.04 E-value=18 Score=24.29 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=18.6
Q ss_pred cccCceEEEEECCCCCEEE--EEEech
Q psy2880 103 KRSKRIRVHALNIEGKMFE--IIAEGL 127 (166)
Q Consensus 103 ~R~~~I~v~~~d~~G~~~~--~~~~g~ 127 (166)
.....|+|+|.|.+|+... ..++|.
T Consensus 4 ~k~~~VtV~YvDe~Gn~La~~~~ltG~ 30 (85)
T 2kvz_A 4 GKPNQVTVNYLDENNTSIAPSLYLSGL 30 (85)
T ss_dssp SCCCCEEEEEECSSSCEEEEEEEECCC
T ss_pred ccCCeEEEEEECCCCCCCCCCeEEeee
Confidence 3467899999999999754 345554
No 25
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=42.91 E-value=22 Score=24.21 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=25.5
Q ss_pred eecCcccCCCCcccccc---CceEEEEECCCCCEEEEEEec
Q psy2880 89 NEGCLSLPGIFNKIKRS---KRIRVHALNIEGKMFEIIAEG 126 (166)
Q Consensus 89 ~EgCLS~p~~~~~V~R~---~~I~v~~~d~~G~~~~~~~~g 126 (166)
.+.|.++-.+.+.|.+. ..+.|+|.|++|+++++.-++
T Consensus 24 ~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~ 64 (87)
T 2bkf_A 24 DPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQG 64 (87)
T ss_dssp CGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHH
T ss_pred cCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHH
Confidence 34455554444444332 468999999999999987554
No 26
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=31.66 E-value=21 Score=24.17 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=20.7
Q ss_pred ccccCceEEEEECCCCCEEEEEEechh
Q psy2880 102 IKRSKRIRVHALNIEGKMFEIIAEGLL 128 (166)
Q Consensus 102 V~R~~~I~v~~~d~~G~~~~~~~~g~~ 128 (166)
..+...++++|.|++|.++++.-+--+
T Consensus 41 ~~~~~~f~lky~DEeGD~itisSd~EL 67 (89)
T 1vd2_A 41 FDNEQLFTMKWIDEEGDPCTVSSQLEL 67 (89)
T ss_dssp CCSSCCEEEEECCSSSCCEECCSHHHH
T ss_pred CCCCCeEEEEEECCCCCcccccCHHHH
Confidence 346677999999999999887654433
No 27
>2kt7_A Putative peptidoglycan bound protein (LPXTG motif); immunoglobulin fold, all-beta, peptidoglycan binding protein, structural genomics; NMR {Listeria monocytogenes}
Probab=30.47 E-value=33 Score=23.82 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=16.7
Q ss_pred cCceEEEEECCCCCEEE--EEEec
Q psy2880 105 SKRIRVHALNIEGKMFE--IIAEG 126 (166)
Q Consensus 105 ~~~I~v~~~d~~G~~~~--~~~~g 126 (166)
...|+|+|.|.+|+... ..++|
T Consensus 5 ~~~VtV~YvDe~Gn~Ia~~~~ltG 28 (102)
T 2kt7_A 5 NFTVKVEYVDADGAEIAPSDTLTD 28 (102)
T ss_dssp TCCEEEEEEETTSSEEEEEEEECS
T ss_pred CCEEEEEEEcCCCCCCCCCEeecC
Confidence 45799999999999765 34444
No 28
>3uip_D E3 SUMO-protein ligase ranbp2; UBC9, nuclear pore complex, ligase isomerase-protein binding complex; HET: CME; 2.29A {Homo sapiens} PDB: 3uio_D* 3uin_D
Probab=29.10 E-value=21 Score=23.06 Aligned_cols=16 Identities=25% Similarity=0.721 Sum_probs=12.9
Q ss_pred HHHHhhhhCCceeecc
Q psy2880 132 LQHEIDHLNGKIFIEY 147 (166)
Q Consensus 132 ~QHEiDHL~G~l~~D~ 147 (166)
|+|++=-|||.||.|-
T Consensus 49 fetavrklng~ly~~~ 64 (67)
T 3uip_D 49 FETAVKKLNGKLYLDG 64 (67)
T ss_dssp HHHHHHTTTTCCCC--
T ss_pred HHHHHHHhCCceecCC
Confidence 6889999999999884
No 29
>3npp_A PFAM DUF1093 family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.15A {Bacillus subtilis}
Probab=28.41 E-value=58 Score=21.59 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=18.0
Q ss_pred CceEEEEECCCCCEEEEEEec
Q psy2880 106 KRIRVHALNIEGKMFEIIAEG 126 (166)
Q Consensus 106 ~~I~v~~~d~~G~~~~~~~~g 126 (166)
..=++.++|.+|+..++++++
T Consensus 28 y~Y~l~~yde~G~~k~l~f~~ 48 (87)
T 3npp_A 28 TEYTLDGYNASGKKEEVTFFA 48 (87)
T ss_dssp EEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEc
Confidence 447889999999999999975
No 30
>2k5q_A Hypothetical membrane associated protein BCR97A; NESG, Q812L6 protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} SCOP: b.40.13.1
Probab=27.56 E-value=57 Score=22.56 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=17.7
Q ss_pred ceEEEEECCCCCEEEEEEec
Q psy2880 107 RIRVHALNIEGKMFEIIAEG 126 (166)
Q Consensus 107 ~I~v~~~d~~G~~~~~~~~g 126 (166)
.=++.++|.+|++.++++++
T Consensus 36 ~Y~l~~yde~Gkek~l~f~~ 55 (105)
T 2k5q_A 36 EYKLTGFDKDGKEKELEFTA 55 (105)
T ss_dssp EEEEEEECSSCCEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEec
Confidence 36788999999999999976
No 31
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=25.94 E-value=43 Score=25.72 Aligned_cols=77 Identities=25% Similarity=0.233 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCceeecccccccccEEEEEecCCCCceEEEEeeeEEeecceEEcCeecCcccCCCCccc
Q psy2880 23 EFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKI 102 (166)
Q Consensus 23 ~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~v~INP~I~~~s~~~~~~~EgCLS~p~~~~~V 102 (166)
.++++.++.|.+.++.....-++=+- ..+. ...++.|. ...||-|.-|..+
T Consensus 29 ~~~~~~~~~I~~A~~~w~~~TCIrFv-------------~r~~--~~~yi~i~------------~~~GC~S~vG~~g-- 79 (199)
T 3lqb_A 29 EFSINDKSVIANAISIFHAQTCIRFV-------------PRSI--QADYLSIE------------NKDGCYSAIGRTG-- 79 (199)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSSEEEE-------------ECSS--CSSEEEEE------------CCSSEEECSSCCS--
T ss_pred CCCHHHHHHHHHHHHHHHhccCceEE-------------EcCC--CCcEEEEE------------cCCCcccccCccC--
Confidence 46777888888888877764433221 1111 12233332 1258999877642
Q ss_pred cccCceEEEEECCCCCEEEEEEec---hhhhHHHHHhhhhCCce
Q psy2880 103 KRSKRIRVHALNIEGKMFEIIAEG---LLAICLQHEIDHLNGKI 143 (166)
Q Consensus 103 ~R~~~I~v~~~d~~G~~~~~~~~g---~~Ar~~QHEiDHL~G~l 143 (166)
..+.+.+.. +...+++||+=|.-|..
T Consensus 80 ---------------g~q~~sl~~~~C~~~g~i~HEl~HaLGf~ 108 (199)
T 3lqb_A 80 ---------------GKQVVSLNRKGCVYSGIAQHELNHALGFY 108 (199)
T ss_dssp ---------------SEEEEEECTTTCCSHHHHHHHHHHHHTCC
T ss_pred ---------------CcceEEecCCCCCccchHHHHHHHHhccc
Confidence 344555542 45689999999999865
No 32
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=25.16 E-value=33 Score=23.72 Aligned_cols=29 Identities=7% Similarity=0.115 Sum_probs=23.3
Q ss_pred cCceEEEEECCCCCEEEEEEechhhhHHH
Q psy2880 105 SKRIRVHALNIEGKMFEIIAEGLLAICLQ 133 (166)
Q Consensus 105 ~~~I~v~~~d~~G~~~~~~~~g~~Ar~~Q 133 (166)
+...+++|.|++|..+++.-+.-+-.++|
T Consensus 55 ~~~~klkYkDEdGD~Vtl~sddDl~~A~e 83 (98)
T 1q1o_A 55 SPITKIKYQDEDGDFVVLGSDEDWNVAKE 83 (98)
T ss_dssp CCCCCEEEECSSSCEEEECSHHHHHHHHH
T ss_pred cceeEEEEEcCCCCEEEEcCHHHHHHHHH
Confidence 35579999999999999887777666666
No 33
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=24.20 E-value=59 Score=22.47 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=24.3
Q ss_pred cCceEEEEECCCCCEEEEEEechhhhHHHH
Q psy2880 105 SKRIRVHALNIEGKMFEIIAEGLLAICLQH 134 (166)
Q Consensus 105 ~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QH 134 (166)
...+++.|.|++|..+++.-+.-+-..++.
T Consensus 60 ~~~f~l~Y~DedGDlItiSsDeEL~~Al~~ 89 (102)
T 2kkc_A 60 PGGFQAHYRAERGDLVAFSSDEELTMAMSY 89 (102)
T ss_dssp SSCEEEEEECTTCCEEEECSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCEEEecCHHHHHHHHHh
Confidence 456999999999999999877766666654
No 34
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.24 E-value=24 Score=24.67 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=25.1
Q ss_pred eecCcccCCCCcccccc---CceEEEEECCCCCEEEEEEec
Q psy2880 89 NEGCLSLPGIFNKIKRS---KRIRVHALNIEGKMFEIIAEG 126 (166)
Q Consensus 89 ~EgCLS~p~~~~~V~R~---~~I~v~~~d~~G~~~~~~~~g 126 (166)
.+.|.++-.+.+.|.+. ..+.|+|.|++|+++.+.-++
T Consensus 32 ~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~ 72 (101)
T 1wj6_A 32 DPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQG 72 (101)
T ss_dssp CTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHH
Confidence 44455555554444332 467999999999999876544
No 35
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=21.84 E-value=76 Score=16.86 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=18.5
Q ss_pred cccccccccCCHHHHHHHHHHHHHH
Q psy2880 15 KKIAEPITEFDINLKKIIFNMTETM 39 (166)
Q Consensus 15 r~~~~~V~~~~~~~~~li~~m~~tm 39 (166)
|.++.|-.+.++++++|-..+...+
T Consensus 2 rsksaptspcdqeikelennirkal 26 (31)
T 2wh0_Q 2 RSKSAPTSPCDQEIKELENNIRKAL 26 (31)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHh
Confidence 4567777777888988877776544
No 36
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.22 E-value=1.1e+02 Score=16.30 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=14.9
Q ss_pred ccccCC-HHHHHHHHHHHHHHhhc
Q psy2880 20 PITEFD-INLKKIIFNMTETMYHA 42 (166)
Q Consensus 20 ~V~~~~-~~~~~li~~m~~tm~~~ 42 (166)
-|+.|+ .++.+|+++.++|.-+.
T Consensus 5 gvtrfdekqieelldncietfvae 28 (31)
T 4h62_V 5 GVTRFDEKQIEELLDNCIETFVAE 28 (31)
T ss_dssp -----CHHHHHHHHHHHHHHHHTC
T ss_pred ccccccHHHHHHHHHHHHHHHHhh
Confidence 356677 67899999999988654
No 37
>2k5w_A Hypothetical cytosolic protein BCR103A; unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} SCOP: b.40.13.1
Probab=21.16 E-value=74 Score=22.57 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=19.0
Q ss_pred CceEEEEECCCCCEEEEEEech
Q psy2880 106 KRIRVHALNIEGKMFEIIAEGL 127 (166)
Q Consensus 106 ~~I~v~~~d~~G~~~~~~~~g~ 127 (166)
..=++.++|.+|++.+++++.-
T Consensus 33 Y~Y~l~~yDe~GkeK~v~f~~~ 54 (117)
T 2k5w_A 33 RNYTLPAYDEDGVKKQITFRST 54 (117)
T ss_dssp ECEEEEEEETTCCEEEEEECCC
T ss_pred EEEEEEEEcCCCCEEEEEEEee
Confidence 4478899999999999999874
Done!