Your job contains 1 sequence.
>psy2880
MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI
LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF
EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2880
(166 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P0A6K3 - symbol:def species:83333 "Escherichia ... 399 3.9e-37 1
TIGR_CMR|SO_0032 - symbol:SO_0032 "polypeptide deformylas... 392 2.1e-36 1
TIGR_CMR|CPS_0020 - symbol:CPS_0020 "polypeptide deformyl... 388 5.7e-36 1
UNIPROTKB|Q9KVU3 - symbol:def1 "Peptide deformylase 1" sp... 372 2.8e-34 1
TIGR_CMR|VC_0046 - symbol:VC_0046 "polypeptide deformylas... 372 2.8e-34 1
TIGR_CMR|SO_2530 - symbol:SO_2530 "polypeptide deformylas... 331 6.2e-30 1
TIGR_CMR|SPO_3219 - symbol:SPO_3219 "peptide deformylase"... 324 3.4e-29 1
TIGR_CMR|GSU_0129 - symbol:GSU_0129 "polypeptide deformyl... 320 9.1e-29 1
TIGR_CMR|CPS_0407 - symbol:CPS_0407 "polypeptide deformyl... 313 5.0e-28 1
UNIPROTKB|Q9KN16 - symbol:def2 "Peptide deformylase 2" sp... 299 1.5e-26 1
TIGR_CMR|VC_A0150 - symbol:VC_A0150 "polypeptide deformyl... 299 1.5e-26 1
TIGR_CMR|CHY_1484 - symbol:CHY_1484 "peptide deformylase"... 298 1.9e-26 1
TIGR_CMR|BA_4005 - symbol:BA_4005 "polypeptide deformylas... 291 1.1e-25 1
TIGR_CMR|CBU_0993 - symbol:CBU_0993 "peptide deformylase"... 289 1.8e-25 1
TIGR_CMR|CJE_0184 - symbol:CJE_0184 "peptide deformylase"... 281 1.2e-24 1
GENEDB_PFALCIPARUM|PFI0380c - symbol:PFI0380c "formylmeth... 278 2.6e-24 1
UNIPROTKB|Q8I372 - symbol:PFI0380c "Formylmethionine defo... 278 2.6e-24 1
TIGR_CMR|NSE_0392 - symbol:NSE_0392 "peptide deformylase"... 264 7.8e-23 1
TAIR|locus:2222667 - symbol:PDF1B "peptide deformylase 1B... 249 3.0e-21 1
TIGR_CMR|APH_1372 - symbol:APH_1372 "peptide deformylase"... 242 1.7e-20 1
TIGR_CMR|DET_0760 - symbol:DET_0760 "peptide deformylase"... 238 4.4e-20 1
TIGR_CMR|SPO_3217 - symbol:SPO_3217 "peptide deformylase"... 232 1.9e-19 1
TIGR_CMR|GSU_3456 - symbol:GSU_3456 "polypeptide deformyl... 230 3.1e-19 1
TIGR_CMR|ECH_0073 - symbol:ECH_0073 "peptide deformylase"... 229 4.0e-19 1
DICTYBASE|DDB_G0288157 - symbol:DDB_G0288157 "Peptide def... 156 8.1e-19 2
TIGR_CMR|SPO_3218 - symbol:SPO_3218 "peptide deformylase"... 210 4.1e-17 1
TIGR_CMR|BA_4187 - symbol:BA_4187 "polypeptide deformylas... 184 2.3e-14 1
TIGR_CMR|SO_1062 - symbol:SO_1062 "polypeptide deformylas... 171 5.6e-13 1
TAIR|locus:2037733 - symbol:PDF1A "peptide deformylase 1A... 167 1.9e-12 1
TIGR_CMR|APH_1012 - symbol:APH_1012 "putative polypeptide... 128 2.8e-12 2
UNIPROTKB|P96275 - symbol:def "Peptide deformylase" speci... 163 3.9e-12 1
FB|FBgn0051373 - symbol:CG31373 species:7227 "Drosophila ... 155 2.8e-11 1
ZFIN|ZDB-GENE-050913-42 - symbol:pdf "peptide deformylase... 131 2.0e-08 1
UNIPROTKB|F1N5S7 - symbol:PDF "Uncharacterized protein" s... 124 9.8e-08 1
FB|FBgn0051278 - symbol:CG31278 species:7227 "Drosophila ... 124 1.1e-07 1
TIGR_CMR|ECH_0939 - symbol:ECH_0939 "putative polypeptide... 121 1.1e-07 1
UNIPROTKB|Q9HBH1 - symbol:PDF "Peptide deformylase, mitoc... 124 1.2e-07 1
UNIPROTKB|F1S391 - symbol:PDF "Uncharacterized protein" s... 121 1.9e-07 1
RGD|1582894 - symbol:Pdf "peptide deformylase (mitochondr... 120 8.7e-07 1
UNIPROTKB|J9NUA4 - symbol:PDF "Uncharacterized protein" s... 120 1.0e-06 1
RGD|2321990 - symbol:LOC100363967 "peptide deformylase-li... 120 1.2e-06 1
TIGR_CMR|CBU_1879 - symbol:CBU_1879 "polypeptide deformyl... 104 0.00036 1
>UNIPROTKB|P0A6K3 [details] [associations]
symbol:def species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0042586 "peptide
deformylase activity" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IDA] [GO:0031365 "N-terminal protein amino acid
modification" evidence=IDA] [GO:0008198 "ferrous iron binding"
evidence=IDA] [GO:0043686 "co-translational protein modification"
evidence=IPI] [GO:0006412 "translation" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00163 InterPro:IPR000181
PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327 GO:GO:0008198
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0008270 EMBL:U18997
GO:GO:0031365 eggNOG:COG0242 KO:K01462 GO:GO:0042586 GO:GO:0043686
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:IQIGVPR
ProtClustDB:PRK00150 EMBL:X77800 EMBL:X63666 EMBL:X65946
EMBL:X77091 PIR:S23107 RefSeq:NP_417745.1 RefSeq:YP_492146.1
PDB:1BS4 PDB:1BS5 PDB:1BS6 PDB:1BS7 PDB:1BS8 PDB:1BSJ PDB:1BSK
PDB:1BSZ PDB:1DEF PDB:1DFF PDB:1DTF PDB:1G27 PDB:1G2A PDB:1ICJ
PDB:1LRU PDB:1XEM PDB:1XEN PDB:1XEO PDB:2AI8 PDB:2DEF PDB:2DTF
PDB:2KMN PDB:2VHM PDB:2W3T PDB:2W3U PDB:3K6L PDB:4AL2 PDB:4AL3
PDBsum:1BS4 PDBsum:1BS5 PDBsum:1BS6 PDBsum:1BS7 PDBsum:1BS8
PDBsum:1BSJ PDBsum:1BSK PDBsum:1BSZ PDBsum:1DEF PDBsum:1DFF
PDBsum:1DTF PDBsum:1G27 PDBsum:1G2A PDBsum:1ICJ PDBsum:1LRU
PDBsum:1XEM PDBsum:1XEN PDBsum:1XEO PDBsum:2AI8 PDBsum:2DEF
PDBsum:2DTF PDBsum:2KMN PDBsum:2VHM PDBsum:2W3T PDBsum:2W3U
PDBsum:3K6L PDBsum:4AL2 PDBsum:4AL3 ProteinModelPortal:P0A6K3
SMR:P0A6K3 DIP:DIP-47953N IntAct:P0A6K3 PaxDb:P0A6K3 PRIDE:P0A6K3
EnsemblBacteria:EBESCT00000002247 EnsemblBacteria:EBESCT00000017291
GeneID:12934422 GeneID:947780 KEGG:ecj:Y75_p3890 KEGG:eco:b3287
PATRIC:32122006 EchoBASE:EB1410 EcoGene:EG11440
BioCyc:EcoCyc:EG11440-MONOMER BioCyc:ECOL316407:JW3248-MONOMER
BioCyc:MetaCyc:EG11440-MONOMER SABIO-RK:P0A6K3 BindingDB:P0A6K3
ChEMBL:CHEMBL4976 EvolutionaryTrace:P0A6K3 Genevestigator:P0A6K3
Uniprot:P0A6K3
Length = 169
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 74/162 (45%), Positives = 123/162 (75%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+S+N ++ V INP+++ S E I EGCLS+P + R++++++ AL+ +GK F
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK 161
>TIGR_CMR|SO_0032 [details] [associations]
symbol:SO_0032 "polypeptide deformylase" species:211586
"Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK00150
RefSeq:NP_715674.1 ProteinModelPortal:Q8EKQ8 SMR:Q8EKQ8
GeneID:1167930 KEGG:son:SO_0032 PATRIC:23519755 OMA:EMDQYQE
Uniprot:Q8EKQ8
Length = 168
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 80/166 (48%), Positives = 114/166 (68%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL ++ +PD RL+ A PITEF+ L+ I +M ETMY GIGLAA+QVD HKQL++
Sbjct: 1 MALLKVLRFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ + +VFINP+II S + EGCLS+PGI+ K+ R++ + V AL+ G F
Sbjct: 61 MDLQDEVERPKVFINPEIIASSGDF-CNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEF 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ L AIC+QHE+DHL GK+F++YLS K++RI +K K K+
Sbjct: 120 TVEADDLFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAKQ 165
>TIGR_CMR|CPS_0020 [details] [associations]
symbol:CPS_0020 "polypeptide deformylase" species:167879
"Colwellia psychrerythraea 34H" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:EMDQYQE
RefSeq:YP_266802.1 ProteinModelPortal:Q48AS8 SMR:Q48AS8
STRING:Q48AS8 GeneID:3519823 KEGG:cps:CPS_0020 PATRIC:21463475
BioCyc:CPSY167879:GI48-137-MONOMER Uniprot:Q48AS8
Length = 171
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 77/165 (46%), Positives = 111/165 (67%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+L I+ +PD RL+ A+P+T+ II +M TMY G+GLAA+QVDIH+++++
Sbjct: 1 MTILTILRFPDPRLRTKAQPVTDITDATATIIDDMLATMYEENGVGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S++N+Q +FINP+II S E I EGCLS+PG + K+ R V AL+ GK F
Sbjct: 61 MDTSEDNDQPIIFINPEIIATSNETSINEEGCLSVPGTYAKVDRHDACTVKALDRHGKEF 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A L +IC+QHE+DHL G +F++YLS K++RI KK K K
Sbjct: 121 SLNATELQSICIQHELDHLKGVLFVDYLSPLKRQRIQKKLEKEAK 165
>UNIPROTKB|Q9KVU3 [details] [associations]
symbol:def1 "Peptide deformylase 1" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0008463
"formylmethionine deformylase activity" evidence=ISS]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005506 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006464 eggNOG:COG0242 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK00150 OMA:EMDQYQE PIR:A82373 RefSeq:NP_229705.1
PDB:3FWX PDBsum:3FWX ProteinModelPortal:Q9KVU3 SMR:Q9KVU3
DNASU:2614445 GeneID:2614445 KEGG:vch:VC0046 PATRIC:20079140
EvolutionaryTrace:Q9KVU3 GO:GO:0008463 Uniprot:Q9KVU3
Length = 169
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 74/166 (44%), Positives = 117/166 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 61 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ RI +K L+ IK+
Sbjct: 120 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEK-LEKIKR 164
>TIGR_CMR|VC_0046 [details] [associations]
symbol:VC_0046 "polypeptide deformylase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006464 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150 OMA:EMDQYQE
PIR:A82373 RefSeq:NP_229705.1 PDB:3FWX PDBsum:3FWX
ProteinModelPortal:Q9KVU3 SMR:Q9KVU3 DNASU:2614445 GeneID:2614445
KEGG:vch:VC0046 PATRIC:20079140 EvolutionaryTrace:Q9KVU3
GO:GO:0008463 Uniprot:Q9KVU3
Length = 169
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 74/166 (44%), Positives = 117/166 (70%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L ++ +PD RL+ +A+P+ + +++I+ +M ETMY GIGLAA+QVDIH+++++
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DIS+ +Q V INP+II E I EGCLS+PG + R+ + V AL+ G+ +
Sbjct: 61 IDISETRDQPMVLINPEIIEKRGEDGI-EEGCLSVPGARALVPRAAEVTVKALDRNGQEY 119
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ A+ LLAIC+QHE+DHL GK+F++YLS K+ RI +K L+ IK+
Sbjct: 120 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEK-LEKIKR 164
>TIGR_CMR|SO_2530 [details] [associations]
symbol:SO_2530 "polypeptide deformylase" species:211586
"Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK12846
RefSeq:NP_718116.1 ProteinModelPortal:Q8EE60 SMR:Q8EE60
GeneID:1170239 KEGG:son:SO_2530 PATRIC:23524691 OMA:NEGCISV
Uniprot:Q8EE60
Length = 163
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 70/163 (42%), Positives = 109/163 (66%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAM-GIGLAASQVDIHKQLL 59
M +L I+ PD RLK+ A+P+ + + ++ I ++ ETMYH GIGLA++QV ++
Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDIEA-IQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59
Query: 60 ILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
++D+S+ +Q V +NP+I+ S E + EGCLS+PG K+ R ++++V AL+ +GK
Sbjct: 60 VIDLSETRDQPLVLVNPEIVEKSGE-YVGEEGCLSIPGYRAKVTRFEKVKVTALDRQGKA 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
EI + LAI LQHEIDHL+GK+FIE+LS K++ +KK K
Sbjct: 119 IEIETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRK 161
>TIGR_CMR|SPO_3219 [details] [associations]
symbol:SPO_3219 "peptide deformylase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_168422.1 ProteinModelPortal:Q5LNI5
GeneID:3193782 KEGG:sil:SPO3219 PATRIC:23379885 OMA:HERVVVK
ProtClustDB:CLSK934098 Uniprot:Q5LNI5
Length = 172
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 65/160 (40%), Positives = 100/160 (62%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+ +PD RLKK+ P+ + L+ + +M ETMY A GIGLAA Q+ + +L++LD K
Sbjct: 5 ILIHPDPRLKKVCAPVADISDELRALADDMLETMYDAPGIGLAAPQIGVLDRLIVLDCVK 64
Query: 66 NNN---QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+ + V NP+++ S E IY EGCLS+P + ++ R K + V ++ +GK+
Sbjct: 65 EESAPARPLVMFNPRVVAASDETNIYEEGCLSIPEQYAEVTRPKVVDVEWIDRDGKLQSE 124
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
+GL A C+QHEIDHL+GK+FI+YL K++ I +K K
Sbjct: 125 TFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQK 164
>TIGR_CMR|GSU_0129 [details] [associations]
symbol:GSU_0129 "polypeptide deformylase" species:243231
"Geobacter sulfurreducens PCA" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE017180 GenomeReviews:AE017180_GR
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:NP_951191.2 GeneID:2687913
KEGG:gsu:GSU0129 PATRIC:22023006 ProtClustDB:CLSK827656
BioCyc:GSUL243231:GH27-140-MONOMER Uniprot:Q74GW5
Length = 167
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 67/157 (42%), Positives = 104/157 (66%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+ YPD LKK A P+T + ++++ +M ETMY A G+GLAA Q+ + ++++++D+S+
Sbjct: 5 ILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVIDVSQ 64
Query: 66 NNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEII 123
+ +L V INP II + + + EGCLS+P + R +R+ V +LN+EG+
Sbjct: 65 RDERPELIVCINPVII-HGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEEVVHR 123
Query: 124 AEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKF 160
AEGLLAI QHEIDHL+G +F+++LS KKE KK+
Sbjct: 124 AEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKY 160
>TIGR_CMR|CPS_0407 [details] [associations]
symbol:CPS_0407 "polypeptide deformylase" species:167879
"Colwellia psychrerythraea 34H" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK12846
RefSeq:YP_267165.1 ProteinModelPortal:Q489U9 SMR:Q489U9
STRING:Q489U9 GeneID:3521653 KEGG:cps:CPS_0407 PATRIC:21464175
OMA:DVERFTH BioCyc:CPSY167879:GI48-502-MONOMER Uniprot:Q489U9
Length = 166
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 67/166 (40%), Positives = 107/166 (64%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAM-GIGLAASQVDIHKQLL 59
MT+L I+ P+ +L + A+P+++ ++ +I ++ ETMY GIGLAA+QV + ++
Sbjct: 1 MTVLTILTAPNDKLIEQAKPVSDVS-QIQMLIDDLIETMYDTEDGIGLAATQVGRSEAVV 59
Query: 60 ILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
++DIS N ++L V +NP +I + + EGCLS+PG + ++R + V AL+ GK
Sbjct: 60 VIDISDNRDELLVLVNP-VITHGEATAKGQEGCLSIPGYYADVERFTHVTVEALDRNGKE 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
I ++ LAI +QHEIDHL GK+FI+YLS K++ +KK K IK
Sbjct: 119 LTITSDEFLAIVMQHEIDHLKGKLFIDYLSPLKQQMALKKVKKTIK 164
>UNIPROTKB|Q9KN16 [details] [associations]
symbol:def2 "Peptide deformylase 2" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0008463
"formylmethionine deformylase activity" evidence=ISS]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005506 GO:GO:0006412 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0006464 eggNOG:COG0242 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK12846 GO:GO:0008463 PIR:C82494 RefSeq:NP_232550.1
PDB:3QU1 PDBsum:3QU1 ProteinModelPortal:Q9KN16 SMR:Q9KN16
DNASU:2612555 GeneID:2612555 KEGG:vch:VCA0150 PATRIC:20084873
OMA:DDSNEGC EvolutionaryTrace:Q9KN16 Uniprot:Q9KN16
Length = 168
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 65/166 (39%), Positives = 106/166 (63%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHA-MGIGLAASQVDIHKQLL 59
M +L I+ PD RL+ ++ +T+ +++ +I ++ +T+Y GIGLAA QV + ++
Sbjct: 1 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59
Query: 60 ILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
++D+S N +Q V INPK++ S K++ EGCLS+P + ++R + V AL+ EGK
Sbjct: 60 VIDLSDNRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREGKP 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
I LAI +QHEIDHL+G +FI+YLS K++ +KK K++K
Sbjct: 119 LRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVK 164
>TIGR_CMR|VC_A0150 [details] [associations]
symbol:VC_A0150 "polypeptide deformylase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0006464 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK12846
GO:GO:0008463 PIR:C82494 RefSeq:NP_232550.1 PDB:3QU1 PDBsum:3QU1
ProteinModelPortal:Q9KN16 SMR:Q9KN16 DNASU:2612555 GeneID:2612555
KEGG:vch:VCA0150 PATRIC:20084873 OMA:DDSNEGC
EvolutionaryTrace:Q9KN16 Uniprot:Q9KN16
Length = 168
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 65/166 (39%), Positives = 106/166 (63%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHA-MGIGLAASQVDIHKQLL 59
M +L I+ PD RL+ ++ +T+ +++ +I ++ +T+Y GIGLAA QV + ++
Sbjct: 1 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59
Query: 60 ILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
++D+S N +Q V INPK++ S K++ EGCLS+P + ++R + V AL+ EGK
Sbjct: 60 VIDLSDNRDQPLVLINPKVVSGSN-KEMGQEGCLSVPDYYADVERYTSVVVEALDREGKP 118
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
I LAI +QHEIDHL+G +FI+YLS K++ +KK K++K
Sbjct: 119 LRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVK 164
>TIGR_CMR|CHY_1484 [details] [associations]
symbol:CHY_1484 "peptide deformylase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412
eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150
RefSeq:YP_360316.1 HSSP:P0A6K3 ProteinModelPortal:Q3AC18
STRING:Q3AC18 GeneID:3727424 KEGG:chy:CHY_1484 PATRIC:21276099
OMA:YVKVRAQ BioCyc:CHYD246194:GJCN-1483-MONOMER Uniprot:Q3AC18
Length = 152
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 66/155 (42%), Positives = 99/155 (63%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + ++ D LK+IA+PI E N+ K++ NM +TMY G+GLAA Q+ + K+ ++
Sbjct: 1 MAVYKVVEIGDPILKEIAKPIKEITPNIIKLLENMADTMYAYNGVGLAAPQIGVSKRAIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYS-KEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+D+ + +L INP+II S +EK I EGCLS+PG+ ++ R+K++ V LN G+
Sbjct: 61 VDVGEGLIEL---INPEIIEVSGEEKDI--EGCLSVPGVQGEVVRAKKVTVKGLNRYGEE 115
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKE 154
I AEGLLA QHEIDHLNG +F+E N ++
Sbjct: 116 IVIPAEGLLARAFQHEIDHLNGILFVEKADNIVRK 150
>TIGR_CMR|BA_4005 [details] [associations]
symbol:BA_4005 "polypeptide deformylase" species:198094
"Bacillus anthracis str. Ames" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 eggNOG:COG0242
HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 RefSeq:NP_846247.1 RefSeq:YP_020646.1
RefSeq:YP_029969.1 ProteinModelPortal:Q81WH1 SMR:Q81WH1
DNASU:1086728 EnsemblBacteria:EBBACT00000010618
EnsemblBacteria:EBBACT00000015698 EnsemblBacteria:EBBACT00000019234
GeneID:1086728 GeneID:2816204 GeneID:2852977 KEGG:ban:BA_4005
KEGG:bar:GBAA_4005 KEGG:bat:BAS3718 OMA:IQIGVPR
ProtClustDB:PRK12846 BioCyc:BANT260799:GJAJ-3776-MONOMER
BioCyc:BANT261594:GJ7F-3893-MONOMER Uniprot:Q81WH1
Length = 156
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 61/154 (39%), Positives = 100/154 (64%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M +L I+ +P+ L+ E + FD L K++ +M ETM A G+GLAA QV + Q+ +
Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+DI + ++++ INP I+ + +Q+ EGCLS PG++ +++R+ I+V A N GK+F
Sbjct: 61 VDIGDDTGKIEL-INPSIL-EKRGEQVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVF 118
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKE 154
+ AEGLLA +QHEIDHL+G +F ++ + +E
Sbjct: 119 LLEAEGLLARAIQHEIDHLHGVLFTSKVTRYYEE 152
>TIGR_CMR|CBU_0993 [details] [associations]
symbol:CBU_0993 "peptide deformylase" species:227377
"Coxiella burnetii RSA 493" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE016828 GenomeReviews:AE016828_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:NP_820000.1
ProteinModelPortal:Q83CV9 PRIDE:Q83CV9 GeneID:1208889
KEGG:cbu:CBU_0993 PATRIC:17930707 OMA:WATCAQH ProtClustDB:PRK00150
BioCyc:CBUR227377:GJ7S-984-MONOMER Uniprot:Q83CV9
Length = 170
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 68/164 (41%), Positives = 99/164 (60%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIG-LAASQVDIH--KQLL 59
+ I+ YPD RLK A+ + +FD L+K+I M ET Y A LAA+Q+D+ K +
Sbjct: 1 MFKILQYPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHIT 60
Query: 60 ILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPG-IFNKIKRSKRIRVHALNIEGK 118
++D S N +Q +N +II S E EGC+S+ G F K+ R+ +I+V A + GK
Sbjct: 61 VIDFSPNKDQPLCLVNAEIIERSGE-HTEEEGCMSVGGGTFEKVTRAAKIKVRARDRYGK 119
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
E A+G +A C+QHE+DHLNG IF++ LS K+ RI K+ K
Sbjct: 120 PVEFEADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGK 163
>TIGR_CMR|CJE_0184 [details] [associations]
symbol:CJE_0184 "peptide deformylase" species:195099
"Campylobacter jejuni RM1221" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:PEQSHEI
ProtClustDB:PRK00150 RefSeq:YP_178208.1 ProteinModelPortal:Q5HWX7
SMR:Q5HWX7 STRING:Q5HWX7 GeneID:3230947 KEGG:cjr:CJE0184
PATRIC:20042077 BioCyc:CJEJ195099:GJC0-189-MONOMER Uniprot:Q5HWX7
Length = 175
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 66/165 (40%), Positives = 100/165 (60%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
II YP+ RL +E + +FD L ++ +M ETM + G+GLAA QVDI ++L+++I
Sbjct: 5 IITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLVNIFD 64
Query: 66 NNNQ-----LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
N++ L INP+II +E EGCLS+P F ++KR I + + G+
Sbjct: 65 ENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRFGEFK 124
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
E+ A+G LA+ +QHE DHLNG +FIE +S K+++ K+F K K
Sbjct: 125 ELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKFDKEFKKKKK 169
>GENEDB_PFALCIPARUM|PFI0380c [details] [associations]
symbol:PFI0380c "formylmethionine deformylase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=IDA] HAMAP:MF_00163 InterPro:IPR000181
PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327 GO:GO:0005506
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 OMA:PEQSHEI GO:GO:0008463 GO:GO:0020011
EMBL:AL844508 RefSeq:XP_001351951.1 PDB:1JYM PDB:1RL4 PDB:1RQC
PDBsum:1JYM PDBsum:1RL4 PDBsum:1RQC ProteinModelPortal:Q8I372
SMR:Q8I372 EnsemblProtists:PFI0380c:mRNA GeneID:813356
KEGG:pfa:PFI0380c EuPathDB:PlasmoDB:PF3D7_0907900 KO:K01450
ProtClustDB:CLSZ2433563 EvolutionaryTrace:Q8I372 Uniprot:Q8I372
Length = 241
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/166 (36%), Positives = 99/166 (59%)
Query: 4 LPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDI 63
+ I+ YPD L++ +E +T FD NLK+++ M + MY + GIGL+A QV+I K++++ +
Sbjct: 65 IKIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNA 124
Query: 64 ----SKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
K N+ ++FINP I+ S K EGCLS PGI K++R + + +I G
Sbjct: 125 LYEKRKEENE-RIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYK 183
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
I +G+ + QHE DHLNG +FI+ ++ K+++ K + I+
Sbjct: 184 HLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 229
>UNIPROTKB|Q8I372 [details] [associations]
symbol:PFI0380c "Formylmethionine deformylase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=IDA] HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749
PRINTS:PR01576 Pfam:PF01327 GO:GO:0005506 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:PEQSHEI
GO:GO:0008463 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001351951.1
PDB:1JYM PDB:1RL4 PDB:1RQC PDBsum:1JYM PDBsum:1RL4 PDBsum:1RQC
ProteinModelPortal:Q8I372 SMR:Q8I372 EnsemblProtists:PFI0380c:mRNA
GeneID:813356 KEGG:pfa:PFI0380c EuPathDB:PlasmoDB:PF3D7_0907900
KO:K01450 ProtClustDB:CLSZ2433563 EvolutionaryTrace:Q8I372
Uniprot:Q8I372
Length = 241
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 60/166 (36%), Positives = 99/166 (59%)
Query: 4 LPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDI 63
+ I+ YPD L++ +E +T FD NLK+++ M + MY + GIGL+A QV+I K++++ +
Sbjct: 65 IKIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNA 124
Query: 64 ----SKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
K N+ ++FINP I+ S K EGCLS PGI K++R + + +I G
Sbjct: 125 LYEKRKEENE-RIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYK 183
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
I +G+ + QHE DHLNG +FI+ ++ K+++ K + I+
Sbjct: 184 HLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 229
>TIGR_CMR|NSE_0392 [details] [associations]
symbol:NSE_0392 "peptide deformylase" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:YP_506280.1
ProteinModelPortal:Q2GE16 STRING:Q2GE16 GeneID:3931718
KEGG:nse:NSE_0392 PATRIC:22680845 OMA:KANGWLA
ProtClustDB:CLSK2527811 BioCyc:NSEN222891:GHFU-416-MONOMER
Uniprot:Q2GE16
Length = 186
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 65/181 (35%), Positives = 102/181 (56%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M LL +I PD L +++E + + + +M ETMYH GIGLAA QV + +++++
Sbjct: 1 MALLALIIEPDPLLHEVSEAVAGLSDEKRVFLDDMLETMYHCGGIGLAAVQVGVLERIIV 60
Query: 61 LDIS---------------KNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRS 105
+D+ K++ F+NP+II +S+ +EGCLSLP +I R
Sbjct: 61 VDVPVGKEWHSSPLNHVGYKSSGGPYYFVNPEIIEFSQNLVPADEGCLSLPEQHYEIIRP 120
Query: 106 KRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ V LN +G+ + A G LA C+QHE+DHLNG++++ +LS K + IKK + IK
Sbjct: 121 DAVVVKYLNYDGEECLLKANGWLARCIQHEMDHLNGRLYVSHLSKLKHDLAIKKAAE-IK 179
Query: 166 K 166
K
Sbjct: 180 K 180
>TAIR|locus:2222667 [details] [associations]
symbol:PDF1B "peptide deformylase 1B" species:3702
"Arabidopsis thaliana" [GO:0005506 "iron ion binding" evidence=IEA]
[GO:0006412 "translation" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042586 "peptide deformylase activity"
evidence=IEA;ISS;IDA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA]
InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0009570
GO:GO:0005506 GO:GO:0006412 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 EMBL:AF269165 EMBL:AL163792
EMBL:AY050879 EMBL:AY096673 EMBL:AY085417 IPI:IPI00542984
PIR:T48639 RefSeq:NP_196970.1 RefSeq:NP_850821.1 UniGene:At.5087
PDB:3CPM PDB:3M6O PDB:3M6P PDB:3M6Q PDB:3M6R PDB:3O3J PDB:3PN2
PDB:3PN3 PDB:3PN4 PDB:3PN5 PDB:3PN6 PDBsum:3CPM PDBsum:3M6O
PDBsum:3M6P PDBsum:3M6Q PDBsum:3M6R PDBsum:3O3J PDBsum:3PN2
PDBsum:3PN3 PDBsum:3PN4 PDBsum:3PN5 PDBsum:3PN6
ProteinModelPortal:Q9FUZ2 SMR:Q9FUZ2 IntAct:Q9FUZ2 STRING:Q9FUZ2
PaxDb:Q9FUZ2 PRIDE:Q9FUZ2 EnsemblPlants:AT5G14660.1
EnsemblPlants:AT5G14660.2 GeneID:831318 KEGG:ath:AT5G14660
TAIR:At5g14660 HOGENOM:HOG000243509 InParanoid:Q9FUZ2 OMA:PEQSHEI
PhylomeDB:Q9FUZ2 ProtClustDB:CLSN2687238 SABIO-RK:Q9FUZ2
EvolutionaryTrace:Q9FUZ2 Genevestigator:Q9FUZ2 GermOnline:AT5G14660
Uniprot:Q9FUZ2
Length = 273
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 56/151 (37%), Positives = 89/151 (58%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
T L I+ YPD L+ + I FD NLK ++ M + MY GIGL+A QV ++ QL++
Sbjct: 79 TPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF 138
Query: 62 DISKNNNQLQ--VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKM 119
+ + + + V +NPKI YS + ++EGCLS PGI+ ++ R + +++ A +I G+
Sbjct: 139 NPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGER 198
Query: 120 FEIIAEGLLAICLQHEIDHLNGKIFIEYLSN 150
F I L A QHE DHL G +F + +++
Sbjct: 199 FSISLSRLPARIFQHEYDHLEGVLFFDRMTD 229
>TIGR_CMR|APH_1372 [details] [associations]
symbol:APH_1372 "peptide deformylase" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000235 GenomeReviews:CP000235_GR
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_505871.1 STRING:Q2GID0
GeneID:3930818 KEGG:aph:APH_1372 PATRIC:20951546 OMA:LEIIHYP
ProtClustDB:CLSK747409 BioCyc:APHA212042:GHPM-1372-MONOMER
Uniprot:Q2GID0
Length = 187
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 54/157 (34%), Positives = 93/157 (59%)
Query: 22 TEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDI---SKNNNQL-------- 70
T+F ++ +M +TMY GIGLAA QV +HK++ ++D+ ++ ++++
Sbjct: 24 TDFCEKFNSLVEDMFDTMYAEQGIGLAAVQVGVHKRIFVIDLGPKTEESSEIADDPDGYH 83
Query: 71 -----QVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
V INP+I+ S + EGCLS+P + R +RI + ++ GK + A+
Sbjct: 84 STCGPMVVINPEIVEKSVDLVSMEEGCLSVPDQRELVVRPERIVMQYTDLHGKRKILKAQ 143
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
GLL+ CLQHEIDHLNG +F++++S K++ +++K K
Sbjct: 144 GLLSRCLQHEIDHLNGTVFLKHISKLKRDLVMQKMRK 180
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDI--NLKKIIFNMTETMYHAMGIGLAASQVDIHKQL 58
M++ P++ PD RL +E + E D ++ +M +TMY GIGLAA QV +HK++
Sbjct: 1 MSVRPLVVLPDSRLFLCSEEVRETDFCEKFNSLVEDMFDTMYAEQGIGLAAVQVGVHKRI 60
Query: 59 LILDIS-KNNNQLQVFINP 76
++D+ K ++ +P
Sbjct: 61 FVIDLGPKTEESSEIADDP 79
>TIGR_CMR|DET_0760 [details] [associations]
symbol:DET_0760 "peptide deformylase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150 HSSP:P0A6K3
RefSeq:YP_181493.1 ProteinModelPortal:Q3Z8F6 STRING:Q3Z8F6
GeneID:3229925 KEGG:det:DET0760 PATRIC:21608581 OMA:AMATIRQ
BioCyc:DETH243164:GJNF-761-MONOMER Uniprot:Q3Z8F6
Length = 167
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 52/153 (33%), Positives = 91/153 (59%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M + I P+ L+K A+ + D +++ +I +M ETM A G GLAA QV + +L++
Sbjct: 1 MAIRRICELPEPILRKKAKKVPSIDGSIQTLIDDMIETMKSADGAGLAAPQVGVSLRLIV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+ + V INP+I+ ++Q+ EGCLS+PG F ++ R++ + L+ GK F
Sbjct: 61 FR-EPDAKEATVLINPEIVKKEGQRQV-TEGCLSIPGYFGELTRAETVTAKGLDRHGKAF 118
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKK 153
I G++A L+HE +HL+G ++I++L + +K
Sbjct: 119 RIKGTGVVAQLLEHETEHLDGILYIDHLESEEK 151
>TIGR_CMR|SPO_3217 [details] [associations]
symbol:SPO_3217 "peptide deformylase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_168420.1 ProteinModelPortal:Q5LNI7
GeneID:3194969 KEGG:sil:SPO3217 PATRIC:23379881 OMA:TVIQHEI
ProtClustDB:CLSK934097 Uniprot:Q5LNI7
Length = 165
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 51/162 (31%), Positives = 93/162 (57%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
MT+ + +PD L+ A ++E ++ I +M +TM G+GLAA Q+ + +L +
Sbjct: 1 MTVRRCLPWPDKHLRTRAAEVSEITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAV 60
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D S + NP+I+ S E + ++E +LPG+ K+KR + + V LN +G++
Sbjct: 61 VDGSSERGRAVRLANPEILHASIELREHDEASPNLPGVSAKLKRPRAVTVRFLNEQGQVD 120
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
G+ A +QH+IDHLNG+++ + LS K++ +++K K
Sbjct: 121 RRDFVGIEATSVQHQIDHLNGRMYFDNLSKVKRDMLLRKARK 162
>TIGR_CMR|GSU_3456 [details] [associations]
symbol:GSU_3456 "polypeptide deformylase" species:243231
"Geobacter sulfurreducens PCA" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE017180 GenomeReviews:AE017180_GR
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:NP_954496.1 ProteinModelPortal:Q746R2
GeneID:2686601 KEGG:gsu:GSU3456 PATRIC:22029771 OMA:SAICAPQ
ProtClustDB:CLSK829292 BioCyc:GSUL243231:GH27-3425-MONOMER
Uniprot:Q746R2
Length = 169
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 52/155 (33%), Positives = 91/155 (58%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMG-IGLAASQVDIHKQLLILDIS 64
I+ YP LKK+ +T D ++ +I ++ ETM G +G+AA Q+ + ++ ++D+S
Sbjct: 6 ILQYPHPVLKKVCHTVTAIDEAIRGLIDDLIETMREGPGSVGVAAPQIGVTLRVCVIDVS 65
Query: 65 -----KNNNQ-LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN-IEG 117
K+NN L + +NP+I+ S + EGC+S+P ++RS +RV L+ +G
Sbjct: 66 GSRHGKDNNHGLLLMVNPEIVDRSGNA-VMREGCMSVPDYTGDVERSTEVRVRFLDGADG 124
Query: 118 KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFK 152
EI A G A+ +QHE+DHL+G +F++ + + K
Sbjct: 125 SEREITASGFEAVAIQHEMDHLDGILFLDRIVSIK 159
>TIGR_CMR|ECH_0073 [details] [associations]
symbol:ECH_0073 "peptide deformylase" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:YP_506903.1 PDB:3OCA
PDB:3U04 PDBsum:3OCA PDBsum:3U04 ProteinModelPortal:Q2GI30
STRING:Q2GI30 GeneID:3927935 KEGG:ech:ECH_0073 PATRIC:20575709
OMA:AEWHELE ProtClustDB:CLSK749063
BioCyc:ECHA205920:GJNR-73-MONOMER EvolutionaryTrace:Q2GI30
Uniprot:Q2GI30
Length = 188
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 48/89 (53%), Positives = 61/89 (68%)
Query: 74 INPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQ 133
INPKI+ S+EK EGCLS+PG F+ I R +RI V L+ G I A+G LA CLQ
Sbjct: 93 INPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQ 152
Query: 134 HEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
HEIDHLNG +F++YLS FK++ I+K K
Sbjct: 153 HEIDHLNGTVFLKYLSKFKRDFAIEKVKK 181
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 36/132 (27%), Positives = 70/132 (53%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++L I+ PD RL +E + + D +++K++ +M ETM+ G+GLAA QV +HK++L+
Sbjct: 1 MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILV 60
Query: 61 LDISKNNNQLQVFIN--PKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+++ + + N KI Y Y C+ P I + + +++ L++ G
Sbjct: 61 MNVPEEFEDSEDIENVEDKIEGYELYGGPY---CIINPKIVDISQEKVKLKEGCLSVPGY 117
Query: 119 MFEIIAEGLLAI 130
I+ +A+
Sbjct: 118 FDYIVRPQRIAV 129
>DICTYBASE|DDB_G0288157 [details] [associations]
symbol:DDB_G0288157 "Peptide deformylase,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0042586
"peptide deformylase activity" evidence=IEA] [GO:0005506 "iron ion
binding" evidence=IEA] HAMAP:MF_00163 InterPro:IPR000181
PRINTS:PR01576 dictyBase:DDB_G0288157 Pfam:PF01327 GO:GO:0005506
EMBL:AAFI02000109 eggNOG:COG0242 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
RefSeq:XP_636872.1 ProteinModelPortal:Q54JC1 STRING:Q54JC1
EnsemblProtists:DDB0187806 GeneID:8626484 KEGG:ddi:DDB_G0288157
InParanoid:Q54JC1 OMA:DITGKER Uniprot:Q54JC1
Length = 243
Score = 156 (60.0 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 32/57 (56%), Positives = 40/57 (70%)
Query: 90 EGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIE 146
E CLS+P IF ++RSKR + L+I GK I A+G+LA C QHE DHL GKIFI+
Sbjct: 151 ESCLSVPNIFAHVQRSKRCIITFLDITGKERIIEADGILAACFQHEYDHLLGKIFID 207
Score = 84 (34.6 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 14 LKKIAEPITEFDINLKKIIFNMTETMYHAM----GIGLAASQVDIHKQLLILDISKN--- 66
L++ A P ++ ++N + + + E MY M G G+AA Q+ ++KQL +L++
Sbjct: 18 LREKALPWSKEELNDVRRVEKLLEKMYKEMKDCTGTGIAAPQIGVNKQLFLLELPSQEGL 77
Query: 67 ---NNQLQVFINPKI 78
N L F NPKI
Sbjct: 78 NCPNFPLTAFFNPKI 92
>TIGR_CMR|SPO_3218 [details] [associations]
symbol:SPO_3218 "peptide deformylase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_168421.1 ProteinModelPortal:Q5LNI6
GeneID:3195601 KEGG:sil:SPO3218 PATRIC:23379883 OMA:KLIRPAK
ProtClustDB:CLSK751629 Uniprot:Q5LNI6
Length = 165
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 51/150 (34%), Positives = 79/150 (52%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
M++LPI+ +PD RL +P+ I +I +M +TMY A G GLAA QV + ++ +
Sbjct: 1 MSVLPILTWPDARLSWRCDPVE--GIVPDDLIRDMFDTMYAAKGRGLAAPQVGVMQRFFV 58
Query: 61 LDISKNNN--QLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGK 118
+D+ INP I+ + E CLS+PG+ + R K + V EG
Sbjct: 59 MDVGWKEGPPSPMAMINPVIMAAERVPVEMEEVCLSIPGLSVPVTRPKAVTVQWTAPEGD 118
Query: 119 MFEIIAEGLLAICLQHEIDHLNGKIFIEYL 148
+ +G A C+QHE DHLNG + +++L
Sbjct: 119 IHMADFDGFEARCIQHEFDHLNGVVTLDHL 148
>TIGR_CMR|BA_4187 [details] [associations]
symbol:BA_4187 "polypeptide deformylase" species:198094
"Bacillus anthracis str. Ames" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 eggNOG:COG0242 KO:K01462
OMA:LTSGEGC GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK00150 RefSeq:NP_846423.1 RefSeq:YP_020831.1
RefSeq:YP_030134.1 ProteinModelPortal:Q81MQ9 SMR:Q81MQ9
DNASU:1088919 EnsemblBacteria:EBBACT00000010470
EnsemblBacteria:EBBACT00000016119 EnsemblBacteria:EBBACT00000020183
GeneID:1088919 GeneID:2818161 GeneID:2850259 KEGG:ban:BA_4187
KEGG:bar:GBAA_4187 KEGG:bat:BAS3884 HOGENOM:HOG000243507
BioCyc:BANT260799:GJAJ-3941-MONOMER
BioCyc:BANT261594:GJ7F-4072-MONOMER Uniprot:Q81MQ9
Length = 184
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 53/149 (35%), Positives = 82/149 (55%)
Query: 15 KKIAEPITEFDIN-LKKII-F-------NMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
+++ P +E D N LK++I F M E GIGLAA Q+ I K+++ + ++
Sbjct: 20 EEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGISKKMIAVHVTD 79
Query: 66 NNNQL--QVFINPKIIWYSKEKQIYN--EGCLSLPG-IFNKIKRSKRIRVHALNIEGKMF 120
+ L NPKII +S E+ EGCLS+ + + R RI V A +I G+
Sbjct: 80 TDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVPRYTRITVKATSINGEEV 139
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
++ +GL AI QHEIDHLNG +F ++++
Sbjct: 140 KLRLKGLPAIVFQHEIDHLNGVMFYDHIN 168
>TIGR_CMR|SO_1062 [details] [associations]
symbol:SO_1062 "polypeptide deformylase" species:211586
"Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 RefSeq:NP_716689.1
ProteinModelPortal:Q8EHZ2 GeneID:1168899 KEGG:son:SO_1062
PATRIC:23521771 OMA:ATETEYR ProtClustDB:CLSK906069 Uniprot:Q8EHZ2
Length = 181
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 51/152 (33%), Positives = 74/152 (48%)
Query: 4 LPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQL-LILD 62
LPI + LK+ A + +FD L ++ M +M A G+G+AA QV H L L +
Sbjct: 14 LPIAVVGEAILKQQAIEVRDFDDTLSQLASQMAASMVEAKGVGIAAPQV--HSPLALFIM 71
Query: 63 ISKNNNQLQ--------VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALN 114
S+ N + V +NP+I+ S + + EGCLS+PG I R + I V N
Sbjct: 72 ASRPNERYPDAPLMEPLVVVNPQIVLRSLQLEKGEEGCLSVPGQRFTIWRPQTIVVRYQN 131
Query: 115 IEGKMFEIIAEGLLAICLQHEIDHLNGKIFIE 146
+ G+ G +A QHE DHL G +E
Sbjct: 132 LAGQWQHSELTGFIARIFQHEFDHLQGITLLE 163
>TAIR|locus:2037733 [details] [associations]
symbol:PDF1A "peptide deformylase 1A" species:3702
"Arabidopsis thaliana" [GO:0005506 "iron ion binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0006412
"translation" evidence=ISS] [GO:0042586 "peptide deformylase
activity" evidence=IEA;ISS;IDA] [GO:0043686 "co-translational
protein modification" evidence=IDA] [GO:0009505 "plant-type cell
wall" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0009507 GO:GO:0009570
GO:GO:0005506 GO:GO:0006412 EMBL:AC007591 GO:GO:0009505
EMBL:AF250959 EMBL:AF361861 EMBL:AY129485 IPI:IPI00534874
PIR:E86288 RefSeq:NP_563974.1 UniGene:At.11423 UniGene:At.19791
PDB:1ZXZ PDB:1ZY0 PDB:1ZY1 PDBsum:1ZXZ PDBsum:1ZY0 PDBsum:1ZY1
ProteinModelPortal:Q9FV53 SMR:Q9FV53 STRING:Q9FV53 PaxDb:Q9FV53
PRIDE:Q9FV53 EnsemblPlants:AT1G15390.1 GeneID:838109
KEGG:ath:AT1G15390 TAIR:At1g15390 eggNOG:COG0242
HOGENOM:HOG000243508 InParanoid:Q9FV53 KO:K01462 OMA:LTSGEGC
ProtClustDB:CLSN2687814 SABIO-RK:Q9FV53 ChEMBL:CHEMBL1075041
EvolutionaryTrace:Q9FV53 Genevestigator:Q9FV53 GermOnline:AT1G15390
GO:GO:0042586 GO:GO:0043686 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079 Uniprot:Q9FV53
Length = 269
Score = 167 (63.8 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 42/135 (31%), Positives = 73/135 (54%)
Query: 28 LKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKN----------------NNQLQ 71
++KII +M + M A G+GLAA Q+ + ++++L+ +K + L
Sbjct: 108 IQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLM 167
Query: 72 VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAIC 131
V +NP + S +K ++ EGCLS+ G ++R + V + +GK E+ A G A
Sbjct: 168 VMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARI 227
Query: 132 LQHEIDHLNGKIFIE 146
LQHE DHL+G ++++
Sbjct: 228 LQHECDHLDGNLYVD 242
>TIGR_CMR|APH_1012 [details] [associations]
symbol:APH_1012 "putative polypeptide deformylase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000235 GenomeReviews:CP000235_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:ALANDMM
ProtClustDB:CLSK749347 RefSeq:YP_505573.1 STRING:Q2GJ78
GeneID:3930427 KEGG:aph:APH_1012 PATRIC:20950760
BioCyc:APHA212042:GHPM-1020-MONOMER Uniprot:Q2GJ78
Length = 197
Score = 128 (50.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLP--GIFNKIKRSKRIRVHALNIEGKMFEII 123
+N + V INP+I+ +S E EGCLS+ G+ I+R + + ++ G + I
Sbjct: 84 HNTRSLVCINPQIVSFSGETVTLFEGCLSVKSYGMVG-IQRPGNVDLKYTDLAGNVCVIR 142
Query: 124 AEGLLAICLQHEIDHLNGKIFIEYLSNFKKE 154
LA C+QHE+DHLNG + L N K +
Sbjct: 143 TFNWLARCVQHEMDHLNGVLLANMLDNIKNK 173
Score = 49 (22.3 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 13/64 (20%), Positives = 32/64 (50%)
Query: 1 MTLLPIIYYPDIR-LKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLL 59
M +L + D++ L ++ P+ D ++I+ M + +GL+A Q+ ++
Sbjct: 1 MRVLSVEDQRDLKVLHTVSSPLESVDSATREIVNEMIKIAERGDTVGLSAVQLGYPIRVF 60
Query: 60 ILDI 63
++D+
Sbjct: 61 VIDM 64
Score = 38 (18.4 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 16 KIAEPITEFDINLKKIIFNMTETM 39
++ PI F I++ +FN+TE +
Sbjct: 52 QLGYPIRVFVIDMFSGLFNITEDL 75
>UNIPROTKB|P96275 [details] [associations]
symbol:def "Peptide deformylase" species:1773
"Mycobacterium tuberculosis" [GO:0035601 "protein deacylation"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0042586
"peptide deformylase activity" evidence=IDA] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0005506 GO:GO:0006412 EMBL:BX842573
GO:GO:0035601 eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK00150 PIR:C70631 RefSeq:NP_214943.1
RefSeq:NP_334853.1 RefSeq:YP_006513755.1 PDB:3E3U PDBsum:3E3U
ProteinModelPortal:P96275 SMR:P96275 PRIDE:P96275
EnsemblBacteria:EBMYCT00000003426 EnsemblBacteria:EBMYCT00000072922
GeneID:13318296 GeneID:886366 GeneID:923753 KEGG:mtc:MT0444
KEGG:mtu:Rv0429c KEGG:mtv:RVBD_0429c PATRIC:18122688
TubercuList:Rv0429c OMA:LIGRWKR BindingDB:P96275 ChEMBL:CHEMBL5765
EvolutionaryTrace:P96275 Uniprot:P96275
Length = 197
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 57/180 (31%), Positives = 87/180 (48%)
Query: 1 MTLLPIIYYPDIRLKKIAEPIT-----EFDINLKKIIFNMTETMYHAMGIGLAASQVDIH 55
M ++PI D L P+T +L ++I M +TM A G+GLAA+Q+
Sbjct: 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60
Query: 56 KQLLILDISKNN----NQLQVFINP-----KIIWYSKEKQIYNEGCLSLPGIFNKIKRSK 106
+L + D + + + V INP +I + +EGCLS+PG R+K
Sbjct: 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120
Query: 107 RIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
RV L+ +G I GL A LQHE HL+G F+ YL +R+I ++ +N K+
Sbjct: 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDG--FL-YL-----DRLIGRYARNAKR 172
>FB|FBgn0051373 [details] [associations]
symbol:CG31373 species:7227 "Drosophila melanogaster"
[GO:0042586 "peptide deformylase activity" evidence=ISS]
[GO:0005506 "iron ion binding" evidence=IEA] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
EMBL:AE014297 GO:GO:0005506 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 OMA:LIGRWKR RefSeq:NP_731495.1 UniGene:Dm.26560
HSSP:P96113 ProteinModelPortal:Q8INL3 SMR:Q8INL3 MINT:MINT-970779
STRING:Q8INL3 PRIDE:Q8INL3 EnsemblMetazoa:FBtr0082318 GeneID:318700
KEGG:dme:Dmel_CG31373 UCSC:CG31373-RA FlyBase:FBgn0051373
GeneTree:ENSGT00390000018698 InParanoid:Q8INL3 OrthoDB:EOG4F4QT0
PhylomeDB:Q8INL3 GenomeRNAi:318700 NextBio:845923
ArrayExpress:Q8INL3 Bgee:Q8INL3 Uniprot:Q8INL3
Length = 196
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 45/151 (29%), Positives = 77/151 (50%)
Query: 19 EPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQ--------- 69
E I +IN +II M + + H +G+AA QV I ++++++ + +
Sbjct: 27 EDIDSREIN--QIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGKQEQFKPEIYEE 84
Query: 70 -------LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
L VFINP++ S + + EGC+S+ G +++R ++R+ + G E+
Sbjct: 85 RKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKVRIRGIGKLGTPSEM 144
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEY--LSNF 151
EG A QHE+DHLNG I+++ LS F
Sbjct: 145 ELEGWNARIAQHEVDHLNGTIYMDRMDLSTF 175
>ZFIN|ZDB-GENE-050913-42 [details] [associations]
symbol:pdf "peptide deformylase (mitochondrial)"
species:7955 "Danio rerio" [GO:0042586 "peptide deformylase
activity" evidence=IEA;ISS] [GO:0005506 "iron ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=ISS] [GO:0031365 "N-terminal protein amino
acid modification" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0018206 "peptidyl-methionine modification"
evidence=ISS] HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576
Pfam:PF01327 ZFIN:ZDB-GENE-050913-42 GO:GO:0005739 GO:GO:0005506
GO:GO:0008284 GO:GO:0031365 GO:GO:0018206 eggNOG:COG0242
HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 CTD:64146
HOVERGEN:HBG018948 OMA:MDSRTFT GeneTree:ENSGT00390000018698
EMBL:CT025859 EMBL:BC097196 IPI:IPI00513642 RefSeq:NP_001028902.1
UniGene:Dr.87399 STRING:Q4V8U4 Ensembl:ENSDART00000010129
GeneID:619248 KEGG:dre:619248 InParanoid:Q4V8U4 OrthoDB:EOG49KFRR
NextBio:20901467 Uniprot:Q4V8U4
Length = 247
Score = 131 (51.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 37/139 (26%), Positives = 66/139 (47%)
Query: 28 LKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISKNNNQ----------------LQ 71
++K+I + + M +GL+A Q+ + ++L L+ K + L
Sbjct: 96 VQKVIKTLVKVMRKLECVGLSAPQIGVPLRILALEYPKKMLEESSTASVEARGLVAVPLM 155
Query: 72 VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAIC 131
+FINP++ I+ E C S+ G + R + V LN + + A G A
Sbjct: 156 IFINPQLRVLDGRTVIFQEACESISGYSASVPRYVSVEVSGLNEKAEEVSWKASGWPARI 215
Query: 132 LQHEIDHLNGKIFIEYLSN 150
LQHE+DHLNG ++I+++ +
Sbjct: 216 LQHEMDHLNGVLYIDHMDS 234
>UNIPROTKB|F1N5S7 [details] [associations]
symbol:PDF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042586 "peptide deformylase activity" evidence=IEA]
[GO:0031365 "N-terminal protein amino acid modification"
evidence=IEA] [GO:0018206 "peptidyl-methionine modification"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 OMA:MDSRTFT
GeneTree:ENSGT00390000018698 EMBL:DAAA02046699 IPI:IPI00712973
Ensembl:ENSBTAT00000002176 Uniprot:F1N5S7
Length = 230
Score = 124 (48.7 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 37/148 (25%), Positives = 68/148 (45%)
Query: 19 EPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS-----------KNN 67
EP L++++ + + M +GL+A Q+ + Q+L L+ +
Sbjct: 70 EPAQLAGPELQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLALEFPETLFRACAPRVREA 129
Query: 68 NQ-----LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
Q L+VF+NP + + EGC S+ G + R + +++ L+ G+
Sbjct: 130 RQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEQVVW 189
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSN 150
A G A +QHE+DHL G +FI+ + +
Sbjct: 190 QASGWAARIIQHEMDHLQGCLFIDKMDS 217
>FB|FBgn0051278 [details] [associations]
symbol:CG31278 species:7227 "Drosophila melanogaster"
[GO:0042586 "peptide deformylase activity" evidence=ISS]
[GO:0005506 "iron ion binding" evidence=IEA] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
EMBL:AE014297 GO:GO:0005506 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 OMA:MDSRTFT GeneTree:ENSGT00390000018698
OrthoDB:EOG4F4QT0 EMBL:BT015988 RefSeq:NP_731494.1 UniGene:Dm.17011
HSSP:P27251 SMR:Q9VGY2 STRING:Q9VGY2 EnsemblMetazoa:FBtr0082319
GeneID:41282 KEGG:dme:Dmel_CG31278 UCSC:CG31278-RA
FlyBase:FBgn0051278 InParanoid:Q9VGY2 GenomeRNAi:41282
NextBio:823085 Uniprot:Q9VGY2
Length = 238
Score = 124 (48.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 70 LQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLA 129
L +FINP + + K + EGC+S+ G +++R + +++ L+ G E+ G A
Sbjct: 134 LTIFINPVLTVTNYAKLKHPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNA 193
Query: 130 ICLQHEIDHLNGKIFIEYL 148
QHE+DHL GK++ +++
Sbjct: 194 RIAQHEMDHLEGKLYTDHM 212
>TIGR_CMR|ECH_0939 [details] [associations]
symbol:ECH_0939 "putative polypeptide deformylase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006464
"cellular protein modification process" evidence=ISS] [GO:0042586
"peptide deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
HOGENOM:HOG000243509 RefSeq:YP_507728.1 ProteinModelPortal:Q2GFQ5
STRING:Q2GFQ5 GeneID:3927713 KEGG:ech:ECH_0939 PATRIC:20577264
OMA:ALANDMM ProtClustDB:CLSK749347
BioCyc:ECHA205920:GJNR-942-MONOMER Uniprot:Q2GFQ5
Length = 194
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 32/111 (28%), Positives = 56/111 (50%)
Query: 45 IGLAASQVDIHKQLLILDISKN-NNQLQVFINPKIIWYSKEKQIYNEGCLSLP--GIFNK 101
I + + DI + + +L + + + + INP+++ +S E EGC S G+ N
Sbjct: 62 INMFSGLFDIAQDIKVLSGHHSLHGKNMICINPEVLSFSAETVDLFEGCSSAKSYGLIN- 120
Query: 102 IKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFK 152
I R K + + ++ G + G L+ C+QHE+DHLNG + + N K
Sbjct: 121 ITRPKHMDLRYTDLLGNECIVRVYGWLSRCIQHELDHLNGILLANVVDNIK 171
>UNIPROTKB|Q9HBH1 [details] [associations]
symbol:PDF "Peptide deformylase, mitochondrial"
species:9606 "Homo sapiens" [GO:0005506 "iron ion binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IMP] [GO:0018206 "peptidyl-methionine
modification" evidence=IDA] [GO:0031365 "N-terminal protein amino
acid modification" evidence=IDA] [GO:0042586 "peptide deformylase
activity" evidence=IDA] InterPro:IPR000181 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0006412
GO:GO:0008284 GO:GO:0031365 GO:GO:0018206 UniGene:Hs.130849
GermOnline:ENSG00000157312 HOGENOM:HOG000243508 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 EMBL:AF239156 EMBL:AF322879
EMBL:BC019912 IPI:IPI00007060 RefSeq:NP_071736.1 PDB:3G5K PDB:3G5P
PDBsum:3G5K PDBsum:3G5P ProteinModelPortal:Q9HBH1 SMR:Q9HBH1
STRING:Q9HBH1 DMDM:17433054 PeptideAtlas:Q9HBH1 PRIDE:Q9HBH1
Ensembl:ENST00000288022 GeneID:64146 KEGG:hsa:64146 UCSC:uc002ewx.1
CTD:64146 GeneCards:GC16M069362 H-InvDB:HIX0013187 HGNC:HGNC:30012
neXtProt:NX_Q9HBH1 PharmGKB:PA144596394 HOVERGEN:HBG018948
InParanoid:Q9HBH1 OMA:MDSRTFT SABIO-RK:Q9HBH1 BindingDB:Q9HBH1
ChEMBL:CHEMBL4647 EvolutionaryTrace:Q9HBH1 GenomeRNAi:64146
NextBio:66046 Bgee:Q9HBH1 Genevestigator:Q9HBH1 Uniprot:Q9HBH1
Length = 243
Score = 124 (48.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 35/139 (25%), Positives = 67/139 (48%)
Query: 28 LKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDI-----------SKNNNQ-----LQ 71
L+++ + + M +GL+A Q+ + +Q+L L++ + Q L+
Sbjct: 92 LQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQRALRQMEPFPLR 151
Query: 72 VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAIC 131
VF+NP + + EGC S+ G + R + +++ L+ G+ A G A
Sbjct: 152 VFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARI 211
Query: 132 LQHEIDHLNGKIFIEYLSN 150
+QHE+DHL G +FI+ + +
Sbjct: 212 IQHEMDHLQGCLFIDKMDS 230
>UNIPROTKB|F1S391 [details] [associations]
symbol:PDF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042586 "peptide deformylase activity" evidence=IEA]
[GO:0031365 "N-terminal protein amino acid modification"
evidence=IEA] [GO:0018206 "peptidyl-methionine modification"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 OMA:MDSRTFT
GeneTree:ENSGT00390000018698 EMBL:FP015939
Ensembl:ENSSSCT00000003055 Uniprot:F1S391
Length = 221
Score = 121 (47.7 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 36/148 (24%), Positives = 68/148 (45%)
Query: 19 EPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS-----------KNN 67
EP L++++ + + M +GL+A Q+ + Q+L L+ +
Sbjct: 61 EPAQLAGPELQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLALEFPDALFHACAPRLREI 120
Query: 68 NQLQ-----VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
Q++ VF+NP + + EGC S+ G + R + +++ L+ G+
Sbjct: 121 RQMEPFPLHVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEPVVW 180
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSN 150
A G A +QHE+DHL G +FI+ + +
Sbjct: 181 QASGWAARIIQHEMDHLQGLLFIDKMDS 208
>RGD|1582894 [details] [associations]
symbol:Pdf "peptide deformylase (mitochondrial)" species:10116
"Rattus norvegicus" [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISO] [GO:0018206 "peptidyl-methionine modification"
evidence=ISO] [GO:0031365 "N-terminal protein amino acid
modification" evidence=ISO] [GO:0042586 "peptide deformylase
activity" evidence=ISO] REFSEQ:XM_001073696 Ncbi:XP_001073696
Length = 231
Score = 120 (47.3 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 34/139 (24%), Positives = 68/139 (48%)
Query: 28 LKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS-----------KNNNQ-----LQ 71
L++++ + + M +GL+A Q+ + Q+L+L+ + Q L+
Sbjct: 80 LQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLR 139
Query: 72 VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAIC 131
V +NP + + EGC S+ G + R + +++ L+ +G+ A G A
Sbjct: 140 VLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARI 199
Query: 132 LQHEIDHLNGKIFIEYLSN 150
+QHE+DHL+G +FI+ + +
Sbjct: 200 IQHEMDHLHGCLFIDKMDS 218
>UNIPROTKB|J9NUA4 [details] [associations]
symbol:PDF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042586 "peptide deformylase activity"
evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 GeneTree:ENSGT00390000018698
EMBL:AAEX03004108 Ensembl:ENSCAFT00000044172 OMA:EGCESIR
Uniprot:J9NUA4
Length = 245
Score = 120 (47.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 34/148 (22%), Positives = 68/148 (45%)
Query: 19 EPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS-----------KNN 67
EP L++++ + + M +GL+A Q+ + Q+L + +
Sbjct: 85 EPAQLAGPQLQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLAFEFPEALFRACAPRLRET 144
Query: 68 NQLQVF-----INPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
Q++ F +NP + + + EGC S+ G + R + +++ L+ +G+
Sbjct: 145 RQMEPFPLRVVVNPSLRVLDSRRVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEQVVW 204
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSN 150
A G A +QHE+DHL G +FI+ + +
Sbjct: 205 QASGWAARIIQHEMDHLQGCLFIDKMDS 232
>RGD|2321990 [details] [associations]
symbol:LOC100363967 "peptide deformylase-like protein-like"
species:10116 "Rattus norvegicus" [GO:0005506 "iron ion binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0018206 "peptidyl-methionine modification" evidence=IEA]
[GO:0031365 "N-terminal protein amino acid modification"
evidence=IEA] [GO:0042586 "peptide deformylase activity"
evidence=IEA] HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576
Pfam:PF01327 RGD:2321990 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
GeneTree:ENSGT00390000018698 IPI:IPI00363538 PRIDE:F1LVY9
Ensembl:ENSRNOT00000036634 Uniprot:F1LVY9
Length = 255
Score = 120 (47.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 34/139 (24%), Positives = 68/139 (48%)
Query: 28 LKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDIS-----------KNNNQ-----LQ 71
L++++ + + M +GL+A Q+ + Q+L+L+ + Q L+
Sbjct: 104 LQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLR 163
Query: 72 VFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAIC 131
V +NP + + EGC S+ G + R + +++ L+ +G+ A G A
Sbjct: 164 VLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARI 223
Query: 132 LQHEIDHLNGKIFIEYLSN 150
+QHE+DHL+G +FI+ + +
Sbjct: 224 IQHEMDHLHGCLFIDKMDS 242
>TIGR_CMR|CBU_1879 [details] [associations]
symbol:CBU_1879 "polypeptide deformylase, putative"
species:227377 "Coxiella burnetii RSA 493" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0008463
"formylmethionine deformylase activity" evidence=ISS]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005506 GO:GO:0006412 EMBL:AE016828
GenomeReviews:AE016828_GR eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 RefSeq:NP_820856.1 ProteinModelPortal:Q83AK6
GeneID:1209792 KEGG:cbu:CBU_1879 PATRIC:17932489
HOGENOM:HOG000026809 OMA:REYHREY ProtClustDB:CLSK915093
BioCyc:CBUR227377:GJ7S-1855-MONOMER Uniprot:Q83AK6
Length = 209
Score = 104 (41.7 bits), Expect = 0.00036, P = 0.00036
Identities = 30/126 (23%), Positives = 59/126 (46%)
Query: 45 IGLAASQVDIHKQLLILDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKR 104
+GL+ + + + L +++ ++ + +NP S +K+ EGCLS+PG ++R
Sbjct: 54 VGLSERIILVEQHLFDTTMAEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVER 113
Query: 105 SKRIRVHAL----NIEG--KMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIK 158
+ + A + E K+ ++ QHEIDHL GKI+++ E+
Sbjct: 114 YVHVELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVDKAKLLLNEKDFY 173
Query: 159 KFLKNI 164
F + +
Sbjct: 174 SFRQQL 179
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.143 0.410 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 166 166 0.00097 107 3 11 22 0.47 31
30 0.46 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 583 (62 KB)
Total size of DFA: 142 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.10u 0.09s 18.19t Elapsed: 00:00:01
Total cpu time: 18.10u 0.09s 18.19t Elapsed: 00:00:01
Start: Thu Aug 15 14:40:49 2013 End: Thu Aug 15 14:40:50 2013