RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2880
(166 letters)
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 138 bits (349), Expect = 8e-43
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Query: 4 LPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDI 63
PI Y D L++ A P+ +F +K++ +M ETM+ A G+GLAA Q+ + ++L +
Sbjct: 3 YPIRLYGDPVLRRKARPVEDFS-GIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVE 61
Query: 64 S------------KNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIF-NKIKRSKRIRV 110
+ + + +I Y + EGCLSLPG++ ++ R++RIRV
Sbjct: 62 YADEPEGEEERPLRELVRRVYVVANPVITYREGLVEGTEGCLSLPGLYSEEVPRAERIRV 121
Query: 111 HALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+ EG+ + EG +A QHEIDHL+G +F E L K+E ++ + +
Sbjct: 122 EYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEANRAELVR 177
>d1ix1a_ d.167.1.1 (A:) Peptide deformylase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 169
Score = 136 bits (342), Expect = 5e-42
Identities = 75/164 (45%), Positives = 123/164 (75%)
Query: 3 LLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILD 62
+L I+ +PD RL+ IA+P+ D ++++I +M ETMY A GIGLAA+QV++HK+++++D
Sbjct: 2 ILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD 61
Query: 63 ISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+S++ ++ +VFINP+ +++ Y EGCLS+PG + + R +++R+ AL+ +G FE
Sbjct: 62 LSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEE 121
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
+AEGLLA+C+QHE DHLNGK+F++YLS K++RI KK K ++
Sbjct: 122 VAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 165
>d1lmea_ d.167.1.1 (A:) Peptide deformylase {Thermotoga maritima
[TaxId: 2336]}
Length = 154
Score = 133 bits (335), Expect = 4e-41
Identities = 66/149 (44%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLI 60
+ I + D L+K A+P+T+FD NLKK I M ETMYH G+GLAA QV I ++ +
Sbjct: 8 HHMYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFV 67
Query: 61 LDISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMF 120
+D+ N INP+I+ E ++ EGCLS P IF +I+RSKRI+V N G+
Sbjct: 68 MDVG---NGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYV 124
Query: 121 EIIAEGLLAICLQHEIDHLNGKIFIEYLS 149
E EG A QHE DHLNG + I+ +S
Sbjct: 125 EEELEGYAARVFQHEFDHLNGVLIIDRIS 153
>d1y6ha_ d.167.1.1 (A:) Peptide deformylase {Leptospira interrogans
[TaxId: 173]}
Length = 177
Score = 132 bits (334), Expect = 1e-40
Identities = 56/172 (32%), Positives = 97/172 (56%), Gaps = 10/172 (5%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDIN---LKKIIFNMTETMYHAMGIGLAASQVDIHKQL 58
++ I+ D L+KI+EP+TE +I KK+I +M +TM HA G+GLAA Q+ I KQ+
Sbjct: 1 SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQI 60
Query: 59 LILDISKN-------NNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVH 111
+++ N + ++ +NP I +K+ + EGCLS+PG+ ++R +IR+
Sbjct: 61 VVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQ 120
Query: 112 ALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKN 163
++ +G F+ +G AI QHE DHL G ++++ L + K + +
Sbjct: 121 WMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSS 172
>d1xeoa1 d.167.1.1 (A:1-164) Peptide deformylase {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 129 bits (324), Expect = 2e-39
Identities = 70/164 (42%), Positives = 121/164 (73%), Gaps = 1/164 (0%)
Query: 2 TLLPIIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLIL 61
++L +++ PD RL+K+A+P+ E + +++I+ +M ETMY GIGLAA+QVDIH++++++
Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60
Query: 62 DISKNNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFE 121
D+S+N ++ V INP+++ + EGCLS+P + R++++++ AL+ +GK FE
Sbjct: 61 DVSENRDERLVLINPELLE-KSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119
Query: 122 IIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
+ A+GLLAIC+QHE+DHL GK+F++YLS K++RI +K K +
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDR 163
>d1rl4a_ d.167.1.1 (A:) Peptide deformylase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 165
Score = 113 bits (284), Expect = 2e-33
Identities = 58/163 (35%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 6 IIYYPDIRLKKIAEPITEFDINLKKIIFNMTETMYHAMGIGLAASQVDIHKQLLILDISK 65
I+ YPD L++ +E +T FD NLK+++ M + MY + GIGL+A QV+I K++++ +
Sbjct: 2 IVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALY 61
Query: 66 NNNQL---QVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEI 122
+ ++FINP I+ S K EGCLS PGI K++R + + +I G
Sbjct: 62 EKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLK 121
Query: 123 IAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIK 165
I +G+ + QHE DHLNG +FI+ ++ K+++ K + I+
Sbjct: 122 ILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 164
>d1lqya_ d.167.1.1 (A:) Peptide deformylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 184
Score = 108 bits (271), Expect = 3e-31
Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDIN-LKKIIFNMTETMYHAM------------GIGL 47
+T+ II L+K+AEP+ K+I+ ++ + + + GIGL
Sbjct: 2 ITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGL 61
Query: 48 AASQVDIHKQLLILDISKNNNQLQVFINPKIIWYSKEKQI----YNEGCLSLP-GIFNKI 102
AA Q+++ K+++ + ++ N L + S Q EGCLS+ + +
Sbjct: 62 AAPQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYV 121
Query: 103 KRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLK 162
R RI V ++G+ + +GL AI QHEIDHLNG +F + ++ ++ +
Sbjct: 122 LRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINPADPFQVPDGAIP 181
>d1lm6a_ d.167.1.1 (A:) Peptide deformylase {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 202
Score = 108 bits (269), Expect = 1e-30
Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 26/187 (13%)
Query: 1 MTLLPIIYYPDIRLKKIAEPITEFDINLKKIIFN-------------MTETMYHAMGIGL 47
+ + II + L+ +AE +T + + I+ M E M G+GL
Sbjct: 14 IDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGL 73
Query: 48 AASQVDIHKQLLILDISKNNNQLQVFINPKII------------WYSKEKQIYNEGCLSL 95
AA Q+DI K+++ + + + + + EGCLS+
Sbjct: 74 AAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSV 133
Query: 96 P-GIFNKIKRSKRIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKE 154
+ + R R+ V + +G+ I +G +I +QHEIDH+NG +F + ++
Sbjct: 134 DRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPF 193
Query: 155 RIIKKFL 161
+ L
Sbjct: 194 AVKDGLL 200
>d1lm4a_ d.167.1.1 (A:) Peptide deformylase {Staphylococcus aureus
[TaxId: 1280]}
Length = 194
Score = 103 bits (257), Expect = 7e-29
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 22/184 (11%)
Query: 1 MTLLPIIYYPDIRLKKIAEPIT-EFDINLKKIIFNMTETMYHAM------------GIGL 47
+T+ II L++ A + K+ + M E + ++ G+GL
Sbjct: 13 LTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGL 72
Query: 48 AASQVDIHKQLLILDISKNNNQLQ---VFINPKIIWYSK--EKQIYNEGCLSLPGIFNKI 102
AA Q++I K+++ + I + + + +NPKI+ +S EGCLS+ +
Sbjct: 73 AAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGL 132
Query: 103 KRSK-RIRVHALNIEGKMFEIIAEGLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFL 161
RI + A +IEG ++ +G AI QHEIDHLNG +F +++ K ++
Sbjct: 133 VHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHID---KNHPLQPHT 189
Query: 162 KNIK 165
++
Sbjct: 190 DAVE 193
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 25.7 bits (56), Expect = 2.5
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 8/101 (7%)
Query: 66 NNNQLQVFINPKIIWYSKEKQIYNEGCLSLPGIFNKIKRSKRIRVHALNIEGKMFEIIAE 125
++NQ V I + K G L GI + +I V F+I A
Sbjct: 48 SDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV--------TFDIDAN 99
Query: 126 GLLAICLQHEIDHLNGKIFIEYLSNFKKERIIKKFLKNIKK 166
G+L + + KI I + I++ ++ +K
Sbjct: 100 GILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEK 140
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.143 0.410
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 664,648
Number of extensions: 30871
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 21
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.0 bits)