BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2881
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 134/302 (44%), Positives = 186/302 (61%), Gaps = 4/302 (1%)
Query: 2 KINWITRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
K + RLK SL KT NL S L KKID +L+ ELE LL ADVG ETT+ ++
Sbjct: 192 KEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITN 251
Query: 58 LKKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
L + K+L + E +++PL + PFVI++VGVNGVGKTTTIG
Sbjct: 252 LTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIG 311
Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXX 177
KLA F+++ KSV+LAA DTFRAAA EQL + G+ N++PVI++ D
Sbjct: 312 KLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371
Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQI 237
+ +N D++I DT+GRL +SHLM EL E P+E+ L ID +TGQN +SQ
Sbjct: 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA 431
Query: 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNA 297
K F + + +TG+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ A
Sbjct: 432 KLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEA 491
Query: 298 LL 299
L
Sbjct: 492 LF 493
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 237 bits (604), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 184/297 (61%), Gaps = 4/297 (1%)
Query: 7 TRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKII 62
RLK SL KT NL S L KKID +L+ ELE LL ADVG ETT+ ++ L +
Sbjct: 3 ARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGA 62
Query: 63 YSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
K+L + E +++PL + PFVI++VGVNGVGKTTTIGKLA
Sbjct: 63 SRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 122
Query: 123 FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNT 182
F+++ KSV+LAA DTFRAAA EQL + G+ N++PVI++ D + +N
Sbjct: 123 FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNI 182
Query: 183 DIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSK 242
D++I DT+GRL +SHLM EL E P+E+ L ID +TGQN +SQ K F +
Sbjct: 183 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHE 242
Query: 243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
+ +TG+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ AL
Sbjct: 243 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 299
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 184/297 (61%), Gaps = 4/297 (1%)
Query: 7 TRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKII 62
RLK SL KT NL S L KKID +L+ ELE LL ADVG ETT+ ++ L +
Sbjct: 2 ARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGA 61
Query: 63 YSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
K+L + E +++PL + PFVI++VGVNGVGKTTTIGKLA
Sbjct: 62 SRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 121
Query: 123 FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNT 182
F+++ KSV+LAA DTFRAAA EQL + G+ N++PVI++ D + +N
Sbjct: 122 FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNI 181
Query: 183 DIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSK 242
D++I DT+GRL +SHLM EL E P+E+ L ID +TGQN +SQ K F +
Sbjct: 182 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHE 241
Query: 243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
+ +TG+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ AL
Sbjct: 242 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 298
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 230 bits (587), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 130/292 (44%), Positives = 181/292 (61%), Gaps = 4/292 (1%)
Query: 12 SLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL 67
SL KT NL S L KKID +L+ ELE LL ADVG ETT+ ++ L + K+L
Sbjct: 2 SLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQL 61
Query: 68 FNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK 127
+ E +++PL + PFVI++VGVNGVGKTTTIGKLA F+++
Sbjct: 62 RDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG 121
Query: 128 KSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIV 187
KSV+LAA DTFRAAA EQL + G+ N++PVI++ D + +N D++I
Sbjct: 122 KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIA 181
Query: 188 DTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRIT 247
DT+GRL +SHLM EL E P+E+ L ID +TGQN +SQ K F + + +T
Sbjct: 182 DTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLT 241
Query: 248 GLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
G+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ AL
Sbjct: 242 GITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 293
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 156/272 (57%), Gaps = 3/272 (1%)
Query: 31 KNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXX--XXXXXKSL 88
+++ +ELE LL +D G +T +++ ++K I + +L + Q +
Sbjct: 46 ESILDELEEVLLVSDFGPKTALKIVDTIRKDILAGRLKSGPQIKEALKKNIFKLLTERVT 105
Query: 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148
L +P V+MIVGVNG GKTTT+GKLAN FKK VL+AA DTFRAAA EQL +
Sbjct: 106 TTELQLGNSRPAVLMIVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDTFRAAAGEQLEV 165
Query: 149 LGKYNDVP-VISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXX 207
+ V++E P +++ D+V+ DTSGRL T +LM EL
Sbjct: 166 WAQRTGSEIVMAEGPKPRPAAVLSQAVRRAVEEDFDVVLCDTSGRLHTNYNLMEELRGCK 225
Query: 208 XXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIA 267
P E+ L++DG TG N L+Q +EF++++ +TG I+TKLDGT +GG + ++
Sbjct: 226 RAVSKALSSAPNEVLLVLDGTTGLNMLAQAREFNQVIGVTGFILTKLDGTARGGCVVSVV 285
Query: 268 KKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
+ SIP+ F+G+GE I+DLQ F+A FV+AL
Sbjct: 286 DELSIPVKFVGVGEGIDDLQPFDAQSFVDALF 317
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/308 (41%), Positives = 168/308 (54%), Gaps = 35/308 (11%)
Query: 9 LKESLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNEL------ 58
LK+ L KT + L+ KK+D ELE L++ADVG ETT+++L L
Sbjct: 19 LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEEKDGD 78
Query: 59 -----KKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKT 113
K+II F+T+ L PFVIM+VGVNG GKT
Sbjct: 79 ALESLKEIILEILNFDTK--------------------LNVPPEPPFVIMVVGVNGTGKT 118
Query: 114 TTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXX 173
T+ GKLA F KSV+LAA DTFRAAA EQL I G+ VIS + DP
Sbjct: 119 TSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178
Query: 174 XXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNT 233
+N D+VI+DT+GRL T+ +LM EL + P+E L+ID TGQN
Sbjct: 179 VAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNG 238
Query: 234 LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVD 293
L Q K F + + +TG+I+TKLDGT KGGI AIA++ IP+ FIG+GEK EDL+ F+
Sbjct: 239 LVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEA 298
Query: 294 FVNALLNQ 301
FV LL++
Sbjct: 299 FVEVLLSE 306
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 152/271 (56%), Gaps = 3/271 (1%)
Query: 33 LYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQ--XXXXXXXXXXXXXKSLEK 90
+ +ELE LL +D G + T ++ L++ I S KL + + K+ +
Sbjct: 89 VLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKT 148
Query: 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILG 150
L KP VIMIVGVNG GKTT++GKLA+ K VL+AA DTFRAAA +QL I
Sbjct: 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWA 208
Query: 151 KYNDVP-VISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXX 209
+ V++E +++ D+V+ DTSGRL T LM EL
Sbjct: 209 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKA 268
Query: 210 XXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK 269
P EI L++DGNTG N L Q +EF++++ ITGLI+TKLDG+ +GG + ++ ++
Sbjct: 269 VGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEE 328
Query: 270 YSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
IP+ FIG+GE +EDLQ F+ FVNA+ +
Sbjct: 329 LGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 152/271 (56%), Gaps = 3/271 (1%)
Query: 33 LYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQ--XXXXXXXXXXXXXKSLEK 90
+ +ELE LL +D G + T ++ L++ I S KL + + K+ +
Sbjct: 32 VLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKT 91
Query: 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILG 150
L KP VIMIVGVNG GKTT++GKLA+ K VL+AA DTFRAAA +QL I
Sbjct: 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWA 151
Query: 151 KYNDVP-VISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXX 209
+ V++E +++ D+V+ DTSGRL T LM EL
Sbjct: 152 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKA 211
Query: 210 XXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK 269
P EI L++DGNTG N L Q +EF++++ ITGLI+TKLDG+ +GG + ++ ++
Sbjct: 212 VGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEE 271
Query: 270 YSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
IP+ FIG+GE +EDLQ F+ FVNA+ +
Sbjct: 272 LGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302
>pdb|2Q9A|A Chain A, Structure Of Apo Ftsy
pdb|2Q9A|B Chain B, Structure Of Apo Ftsy
pdb|2Q9B|A Chain A, Structure Of Ftsy:gmppnp Complex
pdb|2Q9B|B Chain B, Structure Of Ftsy:gmppnp Complex
pdb|2Q9C|A Chain A, Structure Of Ftsy:gmppnp With Mgcl Complex
pdb|2Q9C|B Chain B, Structure Of Ftsy:gmppnp With Mgcl Complex
Length = 304
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 111/190 (58%)
Query: 111 GKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXX 170
GKTTTI KL Y++ K V+ A DTFRAA QL GK +PVI + TDP
Sbjct: 114 GKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALA 173
Query: 171 XXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTG 230
+ + D++ VDT+GRL T+ +LM EL E P E++L++D TG
Sbjct: 174 YDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 233
Query: 231 QNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
QN L Q K+F + + +TG+I+TKLDGT KGG+L I + +P+ F+G+GE +DLQ F+
Sbjct: 234 QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFD 293
Query: 291 AVDFVNALLN 300
FV ALL
Sbjct: 294 PEAFVEALLE 303
>pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|E Chain E, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|F Chain F, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2IYL|D Chain D, Structure Of An Ftsy:gdp Complex
Length = 284
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 111/190 (58%)
Query: 111 GKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXX 170
GKTTTI KL Y++ K V+ A DTFRAA QL GK +PVI + TDP
Sbjct: 94 GKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALA 153
Query: 171 XXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTG 230
+ + D++ VDT+GRL T+ +LM EL E P E++L++D TG
Sbjct: 154 YDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 213
Query: 231 QNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
QN L Q K+F + + +TG+I+TKLDGT KGG+L I + +P+ F+G+GE +DLQ F+
Sbjct: 214 QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFD 273
Query: 291 AVDFVNALLN 300
FV ALL
Sbjct: 274 PEAFVEALLE 283
>pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|E Chain E, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
Length = 283
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 111/190 (58%)
Query: 111 GKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXX 170
GKTTTI KL Y++ K V+ A DTFRAA QL GK +PVI + TDP
Sbjct: 93 GKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALA 152
Query: 171 XXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTG 230
+ + D++ VDT+GRL T+ +LM EL E P E++L++D TG
Sbjct: 153 YDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 212
Query: 231 QNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
QN L Q K+F + + +TG+I+TKLDGT KGG+L I + +P+ F+G+GE +DLQ F+
Sbjct: 213 QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFD 272
Query: 291 AVDFVNALLN 300
FV ALL
Sbjct: 273 PEAFVEALLE 282
>pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2XKV|D Chain D, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 303
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 111/190 (58%)
Query: 111 GKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXX 170
GKTTTI KL Y++ K V+ A DTFRAA QL GK +PVI + TDP
Sbjct: 113 GKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALA 172
Query: 171 XXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTG 230
+ + D++ VDT+GRL T+ +LM EL E P E++L++D TG
Sbjct: 173 YDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 232
Query: 231 QNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
QN L Q K+F + + +TG+I+TKLDGT KGG+L I + +P+ F+G+GE +DLQ F+
Sbjct: 233 QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFD 292
Query: 291 AVDFVNALLN 300
FV ALL
Sbjct: 293 PEAFVEALLE 302
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY- 152
FK+ + + M+VGVNG GKTT++ K+ANY+ + VL+AA DTFRA A +QL K
Sbjct: 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTR 159
Query: 153 --NDVPVISEKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXX 209
N V ++ K+ DP +++N D++++DT+GRL +++LM EL
Sbjct: 160 LNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKI 219
Query: 210 XXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK 269
P+E+ L+ID TGQN + Q +EFSK+ ++G+I+TK+D T+KGGI AI +
Sbjct: 220 IQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKEL 279
Query: 270 YSIPLYFIGIGEKIEDLQIFN 290
+IP+ IG+GEK++DL F+
Sbjct: 280 LNIPIKMIGVGEKVDDLLAFD 300
>pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 304
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 110/190 (57%)
Query: 111 GKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXX 170
GKTTTI KL Y++ K V+ A DTFRAA QL GK +PVI + TD
Sbjct: 114 GKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALA 173
Query: 171 XXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTG 230
+ + D++ VDT+GRL T+ +LM EL E P E++L++D TG
Sbjct: 174 YDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 233
Query: 231 QNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
QN L Q K+F + + +TG+I+TKLDGT KGG+L I + +P+ F+G+GE +DLQ F+
Sbjct: 234 QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFD 293
Query: 291 AVDFVNALLN 300
FV ALL
Sbjct: 294 PEAFVEALLE 303
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 142/287 (49%), Gaps = 15/287 (5%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL-FNTEQXXXXXXXXXX 82
I K +DK L +ELE DLL+ADV E L ++K+ + KK+ T++
Sbjct: 47 IKEKDVDKAL-DELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKE 105
Query: 83 XXXKSLEKPL-------IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135
+ LE I K KP+VIM VG NG GKTTTI KLAN+ K SV++AA
Sbjct: 106 AVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165
Query: 136 DTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLST 195
DTFRA A EQL K V VI DP + + D+V++DT+GR T
Sbjct: 166 DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSET 225
Query: 196 QSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLD 255
+LM E+ P + + D G + Q ++F++ ++I G+I+TKLD
Sbjct: 226 NRNLMDEMKKIARVTK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLD 279
Query: 256 GTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN 302
+GG +I+ P+ F+G+G+ +DL+ F F+ + +
Sbjct: 280 ADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGEE 326
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 139/287 (48%), Gaps = 15/287 (5%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL-FNTEQXXXXXXXXXX 82
I K +DK L +ELE DLL+ADV E L ++K+ + KK+ T++
Sbjct: 47 IKEKDVDKAL-DELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKE 105
Query: 83 XXXKSLEKPL-------IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135
+ LE I K KP+VI VG NG GKTTTI KLAN+ K SV++AA
Sbjct: 106 AVSEILETSRRIDLIEEIRKAEKPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165
Query: 136 DTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLST 195
DTFRA A EQL K V VI DP + + D+V++DT+GR T
Sbjct: 166 DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSET 225
Query: 196 QSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLD 255
+L E P + + D G + Q ++F++ ++I G+I+TKLD
Sbjct: 226 NRNLXDEXKKIARVTK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLD 279
Query: 256 GTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN 302
+GG +I+ P+ F+G+G+ +DL+ F F+ + +
Sbjct: 280 ADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGEE 326
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 149/301 (49%), Gaps = 20/301 (6%)
Query: 11 ESLSKTACN-LKSLIVNKKIDKNLYNELESD----LLKADVGFETTQFLLNELKKIIYSK 65
++L K N LK + +D+ L EL D L++ADV L E+++ +
Sbjct: 4 DNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEE 63
Query: 66 K----LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
K + E + KP+ K+ KP ++++VG+ G GKTTT+ KLA
Sbjct: 64 KPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGIQGSGKTTTVAKLAR 122
Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLL-ILGKYNDVPVISEKKITDPXXXXXXXXXXXQKK 180
YF+KR V + DT+R AY QL +L +Y+ + V + D + K
Sbjct: 123 YFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYH-IEVFGNPQEKDAIKLAKEGVDYFKSK 181
Query: 181 NTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEF 240
DI+IVDT+GR L+ E+ P+E+ L+IDG GQ +Q F
Sbjct: 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIH------PHEVILVIDGTIGQQAYNQALAF 235
Query: 241 SKILRITGLIITKLDGTTK-GGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
+ I +I+TKLDG+ K GG L+A+A + P+ FIG GEKI+D++ F+ FV+ LL
Sbjct: 236 KEATPIGSIIVTKLDGSAKGGGALSAVAATGA-PIKFIGTGEKIDDIEPFDPPRFVSRLL 294
Query: 300 N 300
Sbjct: 295 G 295
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 107/204 (52%), Gaps = 8/204 (3%)
Query: 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
PF+IM+VGV G GKTTT GKLA ++KKR V L A D +R AAY+QLL LG V V
Sbjct: 104 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY 163
Query: 159 SEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGR--LSTQSHLMRELXXXXXXXXXXXFE 216
E +P K DI+IVDT+GR ++ L+ E+
Sbjct: 164 GEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK----- 218
Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYF 276
P ++ L+ID + GQ F + I +IITK+DGT KGG + + F
Sbjct: 219 -PDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKF 277
Query: 277 IGIGEKIEDLQIFNAVDFVNALLN 300
IG GEKI++L+ FNA FV+ +L
Sbjct: 278 IGTGEKIDELETFNAKRFVSRILG 301
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 107/204 (52%), Gaps = 8/204 (3%)
Query: 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
PF+IM+VGV G GKTTT GKLA ++KKR V L A D +R AAY+QLL LG V V
Sbjct: 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY 156
Query: 159 SEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGR--LSTQSHLMRELXXXXXXXXXXXFE 216
E +P K DI+IVDT+GR ++ L+ E+
Sbjct: 157 GEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK----- 211
Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYF 276
P ++ L+ID + GQ F + I +IITK+DGT KGG + + F
Sbjct: 212 -PDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKF 270
Query: 277 IGIGEKIEDLQIFNAVDFVNALLN 300
IG GEKI++L+ FNA FV+ +L
Sbjct: 271 IGTGEKIDELETFNAKRFVSRILG 294
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 152/302 (50%), Gaps = 15/302 (4%)
Query: 6 ITRLKESLSKTACNLKSL-IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYS 64
+ +L E+L+K LK+ V+KK+ K + +++ L++ADV + + E+++
Sbjct: 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALE 60
Query: 65 KK----LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLA 120
+K L E K L K VI++VG+ G GKTTT KLA
Sbjct: 61 EKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLA 120
Query: 121 NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKK 180
Y +KR L A DT+R AAYEQL L + VP+ ++ T KK
Sbjct: 121 RYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK 180
Query: 181 NTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEF 240
D++I+DT+GR + L+ E+ P EI L+IDG GQ Q K F
Sbjct: 181 -ADVLIIDTAGRHKEEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAF 233
Query: 241 SKIL-RITGLIITKLDGTTK-GGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
+ + I +I+TKLDG+ K GG L+A+A+ + P+ FIGIGE I+DL+ F+ F++ L
Sbjct: 234 KEAVGEIGSIIVTKLDGSAKGGGALSAVAETKA-PIKFIGIGEGIDDLEPFDPKKFISRL 292
Query: 299 LN 300
L
Sbjct: 293 LG 294
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 152/302 (50%), Gaps = 15/302 (4%)
Query: 6 ITRLKESLSKTACNLKSL-IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYS 64
+ +L E+L+K LK+ V+KK+ K + +++ L++ADV + + E+++
Sbjct: 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALE 60
Query: 65 KK----LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLA 120
+K L E K L K VI++VG+ G GKTTT KLA
Sbjct: 61 EKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLA 120
Query: 121 NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKK 180
Y +KR L A DT+R AAYEQL L + VP+ ++ T KK
Sbjct: 121 RYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK 180
Query: 181 NTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEF 240
D++I+DT+GR + L+ E+ P EI L+IDG GQ Q K F
Sbjct: 181 -ADVLIIDTAGRHKEEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAF 233
Query: 241 SKIL-RITGLIITKLDGTTK-GGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
+ + I +I+TKLDG+ K GG L+A+A+ + P+ FIGIGE I+DL+ F+ F++ L
Sbjct: 234 KEAVGEIGSIIVTKLDGSAKGGGALSAVAETKA-PIKFIGIGEGIDDLEPFDPKKFISRL 292
Query: 299 LN 300
L
Sbjct: 293 LG 294
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 21/290 (7%)
Query: 7 TRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKK 66
RL+E++ + + I + + L E+ L+ ADV E T+ + +++ K+
Sbjct: 7 ARLQEAIGR--LRGRGRITEEDLKATL-REIRRALMDADVNLEVTRDFVERVREEALGKQ 63
Query: 67 LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFV-----IMIVGVNGVGKTTTIGKLAN 121
+ + ++L++ L + P + +VG+ G GKTTT KLA
Sbjct: 64 VLES---LTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 120
Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
Y+K + + LL A DT R AA EQL +LG+ VPV+ P + +
Sbjct: 121 YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA 180
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
D+++VDT+GRL LM EL P E+ L++D TGQ LS + F
Sbjct: 181 RDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARAFD 234
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIF 289
+ + +TGL++TKLDG +GG AA++ ++ P+YF G+ EK E L+ F
Sbjct: 235 EKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSEKPEGLEPF 282
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 21/290 (7%)
Query: 7 TRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKK 66
RL+E++ + + I + + L E+ L+ ADV E T+ + +++ K+
Sbjct: 6 ARLQEAIGR--LRGRGRITEEDLKATL-REIRRALMDADVNLEVTRDFVERVREEALGKQ 62
Query: 67 LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFV-----IMIVGVNGVGKTTTIGKLAN 121
+ + ++L++ L + P + +VG+ G GKTTT KLA
Sbjct: 63 VLES---LTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 119
Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
Y+K + + LL A DT R AA EQL +LG+ VPV+ P + +
Sbjct: 120 YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA 179
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
D+++VDT+GRL LM EL P E+ L++D TGQ LS + F
Sbjct: 180 RDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARAFD 233
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIF 289
+ + +TGL++TKLDG +GG AA++ ++ P+YF G+ EK E L+ F
Sbjct: 234 EKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSEKPEGLEPF 281
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 21/290 (7%)
Query: 7 TRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKK 66
RL+E++ + + I + + L E+ L+ ADV E T+ + +++ K+
Sbjct: 6 ARLQEAIGR--LRGRGRITEEDLKATL-REIRRALMDADVNLEVTRDFVERVREEALGKQ 62
Query: 67 LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFV-----IMIVGVNGVGKTTTIGKLAN 121
+ + ++L++ L + P + +VG+ G GKTTT KLA
Sbjct: 63 VLES---LTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 119
Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
Y+K + + LL A DT R AA EQL +LG+ VPV+ P + +
Sbjct: 120 YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA 179
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
D+++VDT+GRL LM EL P E+ L++D TGQ LS + F
Sbjct: 180 RDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARAFD 233
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIF 289
+ + +TGL++TKLDG +GG AA++ ++ P+YF G+ EK E L+ F
Sbjct: 234 EKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSEKPEGLEPF 281
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 21/290 (7%)
Query: 7 TRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKK 66
RL+E++ + + I + + L E+ L+ ADV E T+ + +++ K+
Sbjct: 7 ARLQEAIGR--LRGRGRITEEDLKATL-REIRRALMDADVNLEVTRDFVERVREEALGKQ 63
Query: 67 LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFV-----IMIVGVNGVGKTTTIGKLAN 121
+ + ++L++ L + P + +VG+ G GKTTT KLA
Sbjct: 64 VLES---LTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 120
Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
Y+K + + LL A DT R AA EQL +LG+ VPV+ P + +
Sbjct: 121 YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA 180
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
D+++VDT+GRL LM EL P E+ L++D TGQ LS + F
Sbjct: 181 RDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARAFD 234
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIF 289
+ + +TGL++TKLDG +GG AA++ ++ P+YF G+ EK E L+ F
Sbjct: 235 EKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSEKPEGLEPF 282
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
+VG+ G GKTTT KLA Y+K + + LL A DT R AA EQL +LG+ VPV+
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
P + + D+++VDT+GRL LM EL P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
++D TGQ LS + F + + +TGL++TKLDG +GG AA++ ++ P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
K E L+ F
Sbjct: 275 KPEGLEPF 282
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
+VG+ G GKTTT KLA Y+K + + LL A DT R AA EQL +LG+ VPV+
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
P + + D+++VDT+GRL LM EL P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
++D TGQ LS + F + + +TGL++TKLDG +GG AA++ ++ P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
K E L+ F
Sbjct: 275 KPEGLEPF 282
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
+VG+ G GKTTT KLA Y+K + + LL A DT R AA EQL +LG+ VPV+
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
P + + D+++VDT+GRL LM EL P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
++D TGQ LS + F + + +TGL++TKLDG +GG AA++ ++ P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
K E L+ F
Sbjct: 275 KPEGLEPF 282
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
+VG+ G GKTTT KLA Y+K + + LL A DT R AA EQL +LG+ VPV+
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
P + + D+++VDT+GRL LM EL P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
++D TGQ LS + F + + +TGL++TKLDG +GG AA++ ++ P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
K E L+ F
Sbjct: 275 KPEGLEPF 282
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
+VG+ G GKTTT KLA Y+K + + LL A DT R AA EQL +LG+ VPV+
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
P + + D+++VDT+GRL LM EL P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
++D TGQ LS + F + + +TGL++TKLDG +GG AA++ ++ P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
K E L+ F
Sbjct: 275 KPEGLEPF 282
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
+VG+ G GKTTT KLA Y+K + + LL A DT R AA EQL +LG+ VPV+
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
P + + D+++VDT+GRL LM EL P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
++D TGQ LS + F + + +TGL++TKLDG +GG AA++ ++ P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
K E L+ F
Sbjct: 275 KPEGLEPF 282
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 136/295 (46%), Gaps = 16/295 (5%)
Query: 15 KTACNLKSL----IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNT 70
K L+SL I+N+++ + E+ + LL+ADV + + L +K I +++ +
Sbjct: 9 KITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASG 68
Query: 71 EQXXXXXXXXXXXXXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKR 126
L P + K K VIM VG+ G GKTTT KLA Y++++
Sbjct: 69 LNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128
Query: 127 KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVI 186
L DTFRA A++QL +P DP + +N +I+I
Sbjct: 129 GWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIII 188
Query: 187 VDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRI 246
VDTSGR + L E+ P I ++D + GQ +Q K F + +
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDV 242
Query: 247 TGLIITKLDGTTK-GGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
+I+TKLDG K GG L+A+A S P+ FIG GE I+D + F F++ LL
Sbjct: 243 ASVIVTKLDGHAKGGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLLG 296
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 116/216 (53%), Gaps = 10/216 (4%)
Query: 90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL 149
+P + P+VIM+VGV G GKTTT GKLA ++KK+ V L D +R AA EQL L
Sbjct: 89 EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQL 148
Query: 150 GKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGR--LSTQSHLMRELXXXX 207
G+ VPV E D + +I+IVDT+GR ++ L+ E+
Sbjct: 149 GQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIY 208
Query: 208 XXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK-GGILAAI 266
P E+ L+ID + GQ +F++ +I +IITK+DGT K GG L+A+
Sbjct: 209 EAIK------PDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAV 262
Query: 267 AKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN 302
A + + FIG GEKI++L++FN FV L + +
Sbjct: 263 AATGAT-IKFIGTGEKIDELEVFNPRRFVARLHHHH 297
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 14/289 (4%)
Query: 9 LKESLSKTACNL--KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIY--- 63
L + LS+T N+ + + + K+ E+ LL+ADV + +N +K+
Sbjct: 5 LTDRLSRTLRNISGRGRLTEDNV-KDTLREVRMALLEADVALPVVREFINRVKEKAVGHE 63
Query: 64 -SKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
+K L ++ + L P V+++ G+ G GKTT++GKL +
Sbjct: 64 VNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123
Query: 123 FK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
+ K KK VL+ + D +R AA +QL L + V P + K
Sbjct: 124 LREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKF 183
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
D+++VDT+GRL +M E+ P E ++D TGQ+ + K F+
Sbjct: 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAKAFN 237
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
+ L +TG+++TK+DG +GG +I P+ F+G+GEK E L+ F+
Sbjct: 238 EALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFH 286
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 11/265 (4%)
Query: 31 KNLYNELESDLLKADVGFETTQFLLNELKKIIY----SKKLFNTEQXXXXXXXXXXXXXK 86
K+ E+ LL+ADV + +N +K+ +K L ++
Sbjct: 27 KDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMG 86
Query: 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQ 145
+ L P V+++ G+ G GKTT++GKL + + K KK VL+ + D +R AA +Q
Sbjct: 87 EENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQ 146
Query: 146 LLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXX 205
L L + V P + K D+++VDT+GRL +M E+
Sbjct: 147 LETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQ 206
Query: 206 XXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAA 265
P E ++D TGQ+ + K F++ L +TG+++TK+DG +GG +
Sbjct: 207 VHASIN------PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALS 260
Query: 266 IAKKYSIPLYFIGIGEKIEDLQIFN 290
I P+ F+G+GEK E L+ F+
Sbjct: 261 IRHITGKPIKFLGVGEKTEALEPFH 285
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 115/216 (53%), Gaps = 10/216 (4%)
Query: 90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL 149
+P + P+VIM+VGV G GK TT GKLA ++KK+ V L D +R AA EQL L
Sbjct: 89 EPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQL 148
Query: 150 GKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGR--LSTQSHLMRELXXXX 207
G+ VPV E D + +I+IVDT+GR ++ L+ E+
Sbjct: 149 GQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIY 208
Query: 208 XXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK-GGILAAI 266
P E+ L+ID + GQ +F++ +I +IITK+DGT K GG L+A+
Sbjct: 209 EAIK------PDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAV 262
Query: 267 AKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN 302
A + + FIG GEKI++L++FN FV L + +
Sbjct: 263 AATGAT-IKFIGTGEKIDELEVFNPRRFVARLHHHH 297
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 102 IMIVGVNGVGKTTTIGKLA--NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS 159
I++ G G GKTTT+ KLA + +K KK + DT+R AA EQL +
Sbjct: 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKK-IAFITTDTYRIAAVEQLKTYAEL------- 159
Query: 160 EKKITDPXXXXXXXXXXXQKK----NTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXF 215
+ P Q K D V VDT+GR + EL F
Sbjct: 160 ---LQAPLEVCYTKEEFQQAKELFSEYDHVFVDTAGRNFKDPQYIDEL------KETIPF 210
Query: 216 ELPYEIFLIIDGNTGQNTLSQI-KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPL 274
E + FL++ + I K FS + + I TK+D TT G + I + I +
Sbjct: 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSV-PVNQYIFTKIDETTSLGSVFNILAESKIGV 269
Query: 275 YFIGIGEKI-EDLQIFNAVDFVNAL 298
F+ G+ + ED+Q + + FV L
Sbjct: 270 GFMTNGQNVPEDIQTVSPLGFVRML 294
>pdb|2YNM|A Chain A, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
pdb|2YNM|B Chain B, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 301
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
VI + G G+GK+TT L+ F K K VL CD
Sbjct: 35 LVIAVYGKGGIGKSTTSSNLSAAFSKLGKKVLQIGCD 71
>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
pdb|3HJN|B Chain B, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
Length = 197
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
I G++G GK+T I LA Y +KR K V+L
Sbjct: 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY 143
++ ++G NG GKTTT+ +A + +K ++ D A+
Sbjct: 34 IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
>pdb|2JFX|A Chain A, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFX|B Chain B, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFZ|A Chain A, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|2JFZ|B Chain B, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|2JFY|A Chain A, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFY|B Chain B, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate
pdb|2W4I|A Chain A, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|2W4I|B Chain B, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|2W4I|E Chain E, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|2W4I|F Chain F, Crystal Structure Of Helicobacter Pylori Glutamate
Racemase In Complex With D-Glutamate And An Inhibitor
pdb|4B1F|A Chain A, Design Of Inhibitors Of Helicobacter Pylori Glutamate
Racemase As Selective Antibacterial Agents:
Incorporation Of Imidazoles Onto A Core
Pyrazolopyrimidinedione Scaffold To Improve
Bioavailabilty
pdb|4B1F|B Chain B, Design Of Inhibitors Of Helicobacter Pylori Glutamate
Racemase As Selective Antibacterial Agents:
Incorporation Of Imidazoles Onto A Core
Pyrazolopyrimidinedione Scaffold To Improve
Bioavailabilty
Length = 255
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 109 GVGKTTTIGKLA----NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKIT 164
G TTI + ++FK + +L+ AC+T A A E+ + KY+ +P++ +
Sbjct: 40 GTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEE---MQKYSKIPIVG---VI 93
Query: 165 DPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSH 198
+P + KN I+++ T + + ++
Sbjct: 94 EP--SILAIKRQVEDKNAPILVLGTKATIQSNAY 125
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL 146
I I G G GKT + N KKR V+ ++ D F A E L
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAXVEHL 84
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL 146
I I G G GKT + N KKR V+ ++ D F A E L
Sbjct: 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHL 83
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL 146
I I G G GKT + N KKR V+ ++ D F A E L
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHL 84
>pdb|3PG5|A Chain A, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|B Chain B, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|C Chain C, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|D Chain D, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
Length = 361
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 109 GVGKTTTIGKLANYFKKRKKSVLLAACD 136
GVGKTT +A+YF + K VL CD
Sbjct: 12 GVGKTTLSTNVAHYFALQGKRVLYVDCD 39
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKL-----ANYFKKRKKSVLLAACDTFR---AAAY 143
L F+ +PF+I + G GK+T K+ N ++R++ V++ + D F A
Sbjct: 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQ 77
Query: 144 EQLLILGKYN-DVP 156
+ + G+YN D P
Sbjct: 78 KAKALKGQYNFDHP 91
>pdb|1G3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp)
pdb|1GSI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp)
pdb|1GTV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With
Thymidine-5'-Diphosphate (Tdp)
pdb|1GTV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With
Thymidine-5'-Diphosphate (Tdp)
pdb|1MRN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Bisubstrate Inhibitor
(Tp5a)
pdb|1MRS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With 5-Ch2oh Deoxyuridine
Monophosphate
pdb|1N5I|A Chain A, Crystal Structure Of Inactive Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine
Monophosphate (Tmp) At Ph 4.6 (Resolution 1.85 A)
pdb|1N5J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Thymidine Diphosphate
(Tdp) And Thymidine Triphosphate (Ttp) At Ph 5.4 (1.85 A
Resolution)
pdb|1N5K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate
(resolution 2.1 A)
pdb|1N5K|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate
(resolution 2.1 A)
pdb|1N5L|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate,
After Catalysis In The Crystal (2.3 A Resolution)
pdb|1N5L|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Crystallized In Sodium Malonate,
After Catalysis In The Crystal (2.3 A Resolution)
pdb|1W2G|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Deoxythymidine (dt)
(2.1 A Resolution)
pdb|1W2G|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Deoxythymidine (dt)
(2.1 A Resolution)
pdb|1W2H|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Azidothymidine
Monophosphate (azt-mp) (2.0 A Resolution)
pdb|1W2H|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Thymidylate Kinase Complexed With Azidothymidine
Monophosphate (azt-mp) (2.0 A Resolution)
Length = 214
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSV 130
+I I GV+G GK T + KL+ F+ +SV
Sbjct: 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31
>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|A Chain A, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPL- 274
E PY++ ++ GN G LS+ +IL+ + + G++AAIA + L
Sbjct: 63 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAIAAGPTALLA 113
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 114 HEIGFGSKV 122
>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|B Chain B, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPL- 274
E PY++ ++ GN G LS+ +IL+ + + G++AAIA + L
Sbjct: 63 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAIAAGPTALLA 113
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 114 HEIGFGSKV 122
>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1
Length = 189
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGCGSKV 123
>pdb|1ZMX|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|G Chain G, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|H Chain H, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|E Chain E, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|F Chain F, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZM7|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
Length = 230
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
+PF ++I G G GKTT + N+F+K K + L
Sbjct: 19 QPFTVLIEGNIGSGKTTYL----NHFEKYKNDICL 49
>pdb|2JCS|A Chain A, Active Site Mutant Of Dnk From D. Melanogaster With Dttp
Bound
pdb|2JCS|B Chain B, Active Site Mutant Of Dnk From D. Melanogaster With Dttp
Bound
Length = 230
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
+PF ++I G G GKTT + N+F+K K + L
Sbjct: 19 QPFTVLIEGNIGSGKTTYL----NHFEKYKNDICL 49
>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106
Length = 196
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAIXAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106
Length = 196
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAIXAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1
Length = 197
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1
Length = 197
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAIXAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|1J90|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
pdb|1J90|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
pdb|1OE0|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|C Chain C, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|D Chain D, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|2JJ8|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP2|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP2|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP5|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP5|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|E Chain E, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|F Chain F, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|G Chain G, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|H Chain H, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|E Chain E, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|F Chain F, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|G Chain G, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|H Chain H, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VPP|A Chain A, Drosophila Melanogaster Deoxyribonucleoside Kinase
Successfully Activates Gemcitabine In Transduced Cancer
Cell Lines
pdb|2VPP|B Chain B, Drosophila Melanogaster Deoxyribonucleoside Kinase
Successfully Activates Gemcitabine In Transduced Cancer
Cell Lines
Length = 230
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
+PF ++I G G GKTT + N+F+K K + L
Sbjct: 19 QPFTVLIEGNIGSGKTTYL----NHFEKYKNDICL 49
>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1
pdb|1PE0|B Chain B, Crystal Structure Of The K130r Mutant Of Human Dj-1
Length = 197
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1
Length = 197
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
CK V +I+G NG GK+T I + + K + V D
Sbjct: 31 CKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKD 70
>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1UCF|B Chain B, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1P5F|A Chain A, Crystal Structure Of Human Dj-1
pdb|1Q2U|A Chain A, Crystal Structure Of Dj-1RS AND IMPLICATION ON FAMILIAL
PARKINSON'S Disease
pdb|2OR3|A Chain A, Pre-Oxidation Complex Of Human Dj-1
pdb|2OR3|B Chain B, Pre-Oxidation Complex Of Human Dj-1
Length = 189
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1
Length = 197
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group
pdb|1PDW|A Chain A, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|B Chain B, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|C Chain C, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|D Chain D, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|E Chain E, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|F Chain F, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|G Chain G, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|H Chain H, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
Length = 197
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|3B36|A Chain A, Structure Of M26l Dj-1
Length = 192
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 67 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 117
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 118 HEIGFGSKV 126
>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAIXAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification
pdb|2R1U|B Chain B, Dj-1 Activation By Catechol Quinone Modification
Length = 187
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 63 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 113
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 114 HEIGFGSKV 122
>pdb|2RK4|A Chain A, Structure Of M26i Dj-1
Length = 197
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1
Length = 192
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 67 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 117
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 118 HEIGFGSKV 126
>pdb|1OT3|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|C Chain C, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|D Chain D, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|E Chain E, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|F Chain F, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|G Chain G, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|H Chain H, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|2VP0|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP0|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
Length = 250
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
+PF ++I G G GKTT + N+F+K K + L
Sbjct: 19 QPFTVLIEGNIGSGKTTYL----NHFEKYKNDICL 49
>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid
Length = 189
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAIXAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|B Chain B, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|C Chain C, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|D Chain D, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|E Chain E, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|F Chain F, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|G Chain G, Crystal Structure Of Aggregated Form Of Dj1
Length = 189
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAICAGPTALLA 114
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 115 HEIGFGSKV 123
>pdb|2RK6|A Chain A, Structure Of E163k Dj-1
Length = 192
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI-AKKYSIPL 274
E PY++ ++ GN G LS+ +IL+ + + G++AAI A ++
Sbjct: 67 EGPYDVVVLPGGNLGAQNLSESAAVKEILK---------EQENRKGLIAAIXAGPTALLA 117
Query: 275 YFIGIGEKI 283
+ IG G K+
Sbjct: 118 HEIGFGSKV 126
>pdb|1WCV|1 Chain 1, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEJ|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 108 NGVGKTTTIGKLANYFKKRKKSVLLAACD 136
GVGKTTT LA Y + K VLL D
Sbjct: 16 GGVGKTTTAINLAAYLARLGKRVLLVDLD 44
>pdb|1CP2|A Chain A, Nitrogenase Iron Protein From Clostridium Pasteurianum
pdb|1CP2|B Chain B, Nitrogenase Iron Protein From Clostridium Pasteurianum
Length = 269
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
+ I G G+GK+TT L + K++++ CD
Sbjct: 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 27.7 bits (60), Expect = 7.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 249 LIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEK 282
L I KL+G KGG++ K + P + IG+ +K
Sbjct: 1076 LGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQK 1109
>pdb|3FWY|A Chain A, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
pdb|3FWY|B Chain B, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
Length = 314
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
V + G G+GK+TT L+ F K VL CD
Sbjct: 50 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,996,039
Number of Sequences: 62578
Number of extensions: 240273
Number of successful extensions: 1095
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 92
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)