Query psy2881
Match_columns 302
No_of_seqs 409 out of 2761
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 19:15:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0552 FtsY Signal recognitio 100.0 2.4E-57 5.1E-62 406.7 30.4 299 2-300 30-340 (340)
2 PRK10416 signal recognition pa 100.0 7.3E-52 1.6E-56 379.7 35.5 300 2-301 13-316 (318)
3 COG0541 Ffh Signal recognition 100.0 5.2E-48 1.1E-52 355.9 32.7 287 5-300 1-295 (451)
4 PRK14974 cell division protein 100.0 5.8E-45 1.3E-49 335.1 32.0 290 5-301 1-336 (336)
5 TIGR01425 SRP54_euk signal rec 100.0 1.5E-44 3.3E-49 340.0 33.3 286 6-300 2-295 (429)
6 PRK10867 signal recognition pa 100.0 2.1E-43 4.7E-48 334.0 33.4 287 5-300 1-296 (433)
7 TIGR00064 ftsY signal recognit 100.0 2.6E-43 5.6E-48 317.2 32.0 271 29-299 2-272 (272)
8 PRK00771 signal recognition pa 100.0 1.8E-41 4E-46 321.6 33.0 274 18-300 7-288 (437)
9 TIGR00959 ffh signal recogniti 100.0 6.2E-41 1.3E-45 317.2 33.3 286 6-300 1-295 (428)
10 KOG0780|consensus 100.0 1.2E-41 2.6E-46 307.3 25.6 263 32-300 30-296 (483)
11 PRK14723 flhF flagellar biosyn 100.0 1E-40 2.2E-45 330.9 29.6 276 6-300 92-380 (767)
12 PRK06995 flhF flagellar biosyn 100.0 2.6E-40 5.6E-45 315.6 30.7 276 6-300 165-448 (484)
13 PRK12726 flagellar biosynthesi 100.0 4.1E-39 8.8E-44 296.3 30.8 280 5-301 118-400 (407)
14 PRK12723 flagellar biosynthesi 100.0 9.2E-39 2E-43 298.9 33.1 279 6-300 85-369 (388)
15 PF00448 SRP54: SRP54-type pro 100.0 5.9E-40 1.3E-44 282.0 20.5 196 99-300 1-196 (196)
16 PRK11889 flhF flagellar biosyn 100.0 3.5E-38 7.5E-43 290.9 29.0 255 32-301 178-435 (436)
17 PRK14722 flhF flagellar biosyn 100.0 3.2E-37 7E-42 286.4 30.2 277 8-300 45-338 (374)
18 PRK14721 flhF flagellar biosyn 100.0 5.7E-37 1.2E-41 288.7 29.2 250 31-300 131-383 (420)
19 PRK05703 flhF flagellar biosyn 100.0 2.7E-36 5.8E-41 286.8 30.4 279 5-301 131-415 (424)
20 PRK12724 flagellar biosynthesi 100.0 2.6E-36 5.6E-41 281.9 29.4 258 32-299 155-415 (432)
21 KOG0781|consensus 100.0 7E-37 1.5E-41 282.6 23.2 272 23-300 287-587 (587)
22 COG1419 FlhF Flagellar GTP-bin 100.0 2.4E-36 5.2E-41 278.5 25.2 215 71-300 177-395 (407)
23 PRK06731 flhF flagellar biosyn 100.0 7.6E-35 1.6E-39 260.7 23.0 249 30-301 11-269 (270)
24 PRK12727 flagellar biosynthesi 100.0 4.4E-32 9.6E-37 259.0 29.0 273 5-300 261-541 (559)
25 COG1120 FepC ABC-type cobalami 100.0 3.3E-29 7.1E-34 221.1 12.6 169 86-255 15-247 (258)
26 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 6.6E-28 1.4E-32 211.8 9.1 140 87-228 18-206 (254)
27 COG1136 SalX ABC-type antimicr 99.9 6.5E-26 1.4E-30 196.5 9.7 139 87-225 19-207 (226)
28 COG1116 TauB ABC-type nitrate/ 99.9 1.9E-25 4.1E-30 194.2 11.2 140 86-225 16-195 (248)
29 COG1126 GlnQ ABC-type polar am 99.9 2.1E-25 4.6E-30 189.2 9.6 141 87-228 16-203 (240)
30 COG1125 OpuBA ABC-type proline 99.9 4.2E-25 9E-30 191.4 9.8 142 87-228 15-203 (309)
31 COG3638 ABC-type phosphate/pho 99.9 7.9E-25 1.7E-29 187.9 11.3 139 87-228 18-215 (258)
32 COG4555 NatA ABC-type Na+ tran 99.9 4.1E-25 8.8E-30 185.4 9.0 162 88-268 17-222 (245)
33 COG2884 FtsE Predicted ATPase 99.9 5.7E-25 1.2E-29 182.9 8.4 140 86-227 15-203 (223)
34 COG0411 LivG ABC-type branched 99.9 4.8E-25 1E-29 190.4 6.5 143 87-229 18-218 (250)
35 COG4152 ABC-type uncharacteriz 99.9 2.2E-24 4.8E-29 185.8 9.6 173 87-278 16-229 (300)
36 COG1135 AbcC ABC-type metal io 99.9 1.2E-24 2.7E-29 193.3 8.1 141 87-228 20-209 (339)
37 COG1127 Ttg2A ABC-type transpo 99.9 3.7E-24 7.9E-29 184.3 10.4 141 87-228 22-213 (263)
38 COG3842 PotA ABC-type spermidi 99.9 2.4E-24 5.3E-29 198.0 7.3 142 87-228 19-204 (352)
39 COG4586 ABC-type uncharacteriz 99.9 2.9E-23 6.4E-28 181.4 12.5 139 88-226 39-222 (325)
40 COG1131 CcmA ABC-type multidru 99.9 2.6E-23 5.6E-28 189.5 11.1 142 87-228 19-204 (293)
41 COG1124 DppF ABC-type dipeptid 99.9 1.7E-23 3.6E-28 180.8 9.1 142 87-228 21-209 (252)
42 COG4604 CeuD ABC-type enteroch 99.9 5.4E-23 1.2E-27 172.1 11.8 142 87-228 15-203 (252)
43 COG3839 MalK ABC-type sugar tr 99.9 1.1E-23 2.4E-28 192.8 8.2 141 88-228 18-201 (338)
44 cd03216 ABC_Carb_Monos_I This 99.9 3.6E-23 7.7E-28 173.1 10.6 131 87-226 14-147 (163)
45 COG0410 LivF ABC-type branched 99.9 2.1E-23 4.5E-28 179.0 9.1 142 87-228 17-204 (237)
46 TIGR02314 ABC_MetN D-methionin 99.9 3.8E-23 8.1E-28 192.0 9.8 142 87-228 19-208 (343)
47 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3.5E-23 7.5E-28 180.9 8.9 138 87-224 18-204 (218)
48 COG1118 CysA ABC-type sulfate/ 99.9 1.5E-23 3.3E-28 186.1 6.5 142 87-228 16-205 (345)
49 cd03214 ABC_Iron-Siderophores_ 99.9 8E-23 1.7E-27 173.7 10.3 140 87-226 13-163 (180)
50 cd03259 ABC_Carb_Solutes_like 99.9 4E-23 8.6E-28 180.0 8.5 140 87-226 14-196 (213)
51 cd03229 ABC_Class3 This class 99.9 8.5E-23 1.8E-27 173.2 10.3 138 87-226 14-166 (178)
52 cd03246 ABCC_Protease_Secretio 99.9 8.9E-23 1.9E-27 172.3 9.7 134 87-224 16-159 (173)
53 cd03115 SRP The signal recogni 99.9 5E-21 1.1E-25 161.4 20.1 172 101-278 2-173 (173)
54 cd03261 ABC_Org_Solvent_Resist 99.9 7.4E-23 1.6E-27 180.9 9.2 140 87-226 14-202 (235)
55 cd03230 ABC_DR_subfamily_A Thi 99.9 4.4E-23 9.6E-28 174.2 7.0 137 87-226 14-160 (173)
56 PRK13537 nodulation ABC transp 99.9 3.5E-23 7.6E-28 190.0 6.8 141 87-228 21-205 (306)
57 cd03228 ABCC_MRP_Like The MRP 99.9 1.4E-22 3E-27 170.8 9.8 134 87-225 16-159 (171)
58 TIGR00960 3a0501s02 Type II (G 99.9 8.8E-23 1.9E-27 178.2 8.8 139 87-226 17-203 (216)
59 COG1122 CbiO ABC-type cobalt t 99.9 8.7E-23 1.9E-27 179.6 8.8 143 86-228 17-206 (235)
60 cd03301 ABC_MalK_N The N-termi 99.9 1.9E-22 4.1E-27 175.6 10.6 140 87-226 14-196 (213)
61 cd03225 ABC_cobalt_CbiO_domain 99.9 1.3E-22 2.8E-27 176.4 9.5 139 87-226 15-199 (211)
62 PRK11629 lolD lipoprotein tran 99.9 1.2E-22 2.5E-27 179.5 9.1 138 87-224 23-209 (233)
63 cd03293 ABC_NrtD_SsuB_transpor 99.9 2.4E-22 5.2E-27 175.9 10.8 140 87-226 18-197 (220)
64 cd03226 ABC_cobalt_CbiO_domain 99.9 5.7E-23 1.2E-27 178.0 6.7 138 87-225 14-190 (205)
65 TIGR02211 LolD_lipo_ex lipopro 99.9 1.4E-22 3E-27 177.5 9.1 138 87-224 19-205 (221)
66 PRK09536 btuD corrinoid ABC tr 99.9 1.3E-22 2.8E-27 191.8 9.6 141 87-228 17-206 (402)
67 TIGR01188 drrA daunorubicin re 99.9 9.4E-23 2E-27 186.9 8.1 141 87-228 7-191 (302)
68 PRK13536 nodulation factor exp 99.9 1.9E-22 4.1E-27 187.4 10.2 141 87-228 55-239 (340)
69 PRK11650 ugpC glycerol-3-phosp 99.9 1.1E-22 2.3E-27 190.2 8.5 142 87-228 18-202 (356)
70 TIGR02673 FtsE cell division A 99.9 2.2E-22 4.8E-27 175.3 9.5 139 87-226 16-202 (214)
71 TIGR01186 proV glycine betaine 99.9 1.4E-22 3E-27 189.4 8.6 142 87-228 7-197 (363)
72 PRK11153 metN DL-methionine tr 99.9 1.8E-22 3.8E-27 188.1 9.3 140 87-226 19-206 (343)
73 cd03258 ABC_MetN_methionine_tr 99.9 2.6E-22 5.6E-27 177.2 9.8 140 87-226 19-206 (233)
74 TIGR03608 L_ocin_972_ABC putat 99.9 2.1E-22 4.5E-27 174.4 9.0 136 87-223 12-196 (206)
75 TIGR01166 cbiO cobalt transpor 99.9 2.7E-22 5.8E-27 171.8 9.6 136 87-223 6-189 (190)
76 cd03247 ABCC_cytochrome_bd The 99.9 2.9E-22 6.3E-27 169.9 9.4 134 87-224 16-160 (178)
77 PRK10584 putative ABC transpor 99.9 2.8E-22 6.1E-27 176.4 9.4 138 87-224 24-210 (228)
78 cd03292 ABC_FtsE_transporter F 99.9 3E-22 6.6E-27 174.4 9.1 139 87-226 15-201 (214)
79 COG4181 Predicted ABC-type tra 99.9 4E-22 8.8E-27 163.4 9.2 141 87-227 24-213 (228)
80 COG1137 YhbG ABC-type (unclass 99.9 5.8E-23 1.3E-27 172.2 4.3 148 80-228 9-206 (243)
81 cd03222 ABC_RNaseL_inhibitor T 99.9 4.1E-22 8.8E-27 168.6 9.4 120 88-226 15-137 (177)
82 PRK13637 cbiO cobalt transport 99.9 5.1E-22 1.1E-26 180.8 10.8 142 87-228 21-212 (287)
83 cd03265 ABC_DrrA DrrA is the A 99.9 3.6E-22 7.8E-27 174.8 9.2 140 87-226 14-197 (220)
84 cd03215 ABC_Carb_Monos_II This 99.9 4.3E-22 9.3E-27 169.5 9.4 138 88-226 15-169 (182)
85 COG4559 ABC-type hemin transpo 99.9 1.7E-21 3.6E-26 164.9 12.7 164 87-251 15-245 (259)
86 cd03256 ABC_PhnC_transporter A 99.9 6E-22 1.3E-26 175.6 10.6 140 87-226 15-210 (241)
87 TIGR03410 urea_trans_UrtE urea 99.9 4.3E-22 9.3E-27 175.4 9.6 140 87-226 14-197 (230)
88 TIGR02315 ABC_phnC phosphonate 99.9 3.3E-22 7.1E-27 177.6 8.9 140 87-226 16-211 (243)
89 PRK11248 tauB taurine transpor 99.9 5.4E-22 1.2E-26 177.7 10.3 140 87-226 15-194 (255)
90 cd03235 ABC_Metallic_Cations A 99.9 2.2E-22 4.8E-27 175.3 7.6 137 87-226 13-197 (213)
91 cd03218 ABC_YhbG The ABC trans 99.9 4.2E-22 9E-27 175.7 9.4 139 87-226 14-198 (232)
92 cd03294 ABC_Pro_Gly_Bertaine T 99.9 3.9E-22 8.4E-27 180.0 9.3 139 87-225 38-225 (269)
93 cd03257 ABC_NikE_OppD_transpor 99.9 2.1E-22 4.5E-27 177.0 7.3 139 87-225 19-210 (228)
94 PRK13646 cbiO cobalt transport 99.9 3.6E-22 7.8E-27 181.7 9.0 141 87-227 21-212 (286)
95 cd03224 ABC_TM1139_LivF_branch 99.9 5E-22 1.1E-26 174.0 9.5 139 87-226 14-197 (222)
96 PRK10908 cell division protein 99.9 5.3E-22 1.1E-26 174.0 9.0 139 87-226 16-202 (222)
97 PRK11247 ssuB aliphatic sulfon 99.9 9E-22 2E-26 176.4 10.6 142 87-228 26-201 (257)
98 PRK13647 cbiO cobalt transport 99.9 4.6E-22 1E-26 179.9 8.7 141 87-228 19-205 (274)
99 cd03262 ABC_HisP_GlnQ_permease 99.9 5.7E-22 1.2E-26 172.5 8.9 139 87-226 14-200 (213)
100 PRK14250 phosphate ABC transpo 99.9 1.1E-21 2.4E-26 174.2 10.9 140 87-226 17-197 (241)
101 cd03296 ABC_CysA_sulfate_impor 99.9 2.8E-22 6.1E-27 177.7 7.0 139 87-225 16-201 (239)
102 TIGR03265 PhnT2 putative 2-ami 99.9 4E-22 8.6E-27 186.2 8.2 142 87-228 18-202 (353)
103 PRK11432 fbpC ferric transport 99.9 4.2E-22 9.2E-27 185.8 8.4 142 87-228 20-204 (351)
104 cd03268 ABC_BcrA_bacitracin_re 99.9 6E-22 1.3E-26 171.9 8.7 139 87-226 14-191 (208)
105 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.3E-21 2.9E-26 173.7 11.1 140 87-226 15-201 (242)
106 PRK10070 glycine betaine trans 99.9 5.1E-22 1.1E-26 187.7 8.9 141 87-227 42-231 (400)
107 PRK10247 putative ABC transpor 99.9 9.1E-22 2E-26 173.0 9.8 138 87-224 21-201 (225)
108 cd03269 ABC_putative_ATPase Th 99.9 8.5E-22 1.8E-26 171.2 9.5 138 87-225 14-192 (210)
109 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.2E-21 2.6E-26 173.3 10.6 139 87-225 15-197 (236)
110 cd03263 ABC_subfamily_A The AB 99.9 8E-22 1.7E-26 172.5 9.2 138 87-226 16-197 (220)
111 TIGR01288 nodI ATP-binding ABC 99.9 1E-21 2.2E-26 180.1 10.3 141 87-228 18-202 (303)
112 cd03231 ABC_CcmA_heme_exporter 99.9 1.6E-21 3.5E-26 168.5 10.9 142 87-229 14-193 (201)
113 cd03266 ABC_NatA_sodium_export 99.9 8.6E-22 1.9E-26 172.1 9.2 139 87-226 19-201 (218)
114 cd03213 ABCG_EPDR ABCG transpo 99.9 5.7E-22 1.2E-26 170.4 8.0 135 87-222 23-172 (194)
115 PRK11000 maltose/maltodextrin 99.9 5.6E-22 1.2E-26 186.3 8.4 141 87-227 17-200 (369)
116 PRK13539 cytochrome c biogenes 99.9 7.9E-22 1.7E-26 171.2 8.7 139 87-226 16-192 (207)
117 PRK13538 cytochrome c biogenes 99.9 9.4E-22 2E-26 170.3 9.1 139 87-226 15-194 (204)
118 PRK13650 cbiO cobalt transport 99.9 8.9E-22 1.9E-26 178.5 9.3 138 87-224 21-204 (279)
119 cd03267 ABC_NatA_like Similar 99.9 1.6E-21 3.4E-26 172.7 10.5 142 86-227 34-220 (236)
120 TIGR03415 ABC_choXWV_ATP choli 99.9 1.2E-21 2.7E-26 183.9 10.2 142 87-228 38-232 (382)
121 cd03219 ABC_Mj1267_LivG_branch 99.9 1.7E-21 3.8E-26 172.2 10.5 139 87-226 14-208 (236)
122 TIGR03005 ectoine_ehuA ectoine 99.9 8.1E-22 1.8E-26 176.1 8.4 140 87-226 14-212 (252)
123 PRK13634 cbiO cobalt transport 99.9 8.8E-22 1.9E-26 179.5 8.8 141 87-227 21-212 (290)
124 TIGR01184 ntrCD nitrate transp 99.9 2.2E-21 4.7E-26 171.2 10.9 139 89-227 1-181 (230)
125 PRK13635 cbiO cobalt transport 99.9 8.1E-22 1.8E-26 178.8 8.4 140 87-226 21-206 (279)
126 PRK13652 cbiO cobalt transport 99.9 1.7E-21 3.6E-26 176.6 10.4 142 87-228 18-205 (277)
127 PRK09452 potA putrescine/sperm 99.9 7.9E-22 1.7E-26 185.3 8.4 142 87-228 28-212 (375)
128 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.4E-21 3E-26 170.0 9.2 136 91-226 16-194 (211)
129 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.3E-21 2.7E-26 160.5 8.4 115 87-225 14-131 (144)
130 PRK11022 dppD dipeptide transp 99.9 8.3E-22 1.8E-26 182.3 8.2 141 87-227 21-220 (326)
131 cd03223 ABCD_peroxisomal_ALDP 99.9 3.7E-21 7.9E-26 161.4 11.2 123 87-223 15-150 (166)
132 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.2E-21 2.6E-26 169.2 8.5 138 87-225 14-168 (200)
133 PRK11831 putative ABC transpor 99.9 1.2E-21 2.6E-26 176.8 8.7 140 87-226 21-209 (269)
134 PRK10851 sulfate/thiosulfate t 99.9 1E-21 2.2E-26 183.4 8.5 142 87-228 16-204 (353)
135 PRK13540 cytochrome c biogenes 99.9 1.8E-21 3.9E-26 168.0 9.4 139 87-226 15-192 (200)
136 TIGR02769 nickel_nikE nickel i 99.9 7.2E-22 1.6E-26 177.8 7.1 139 87-225 25-215 (265)
137 PRK11701 phnK phosphonate C-P 99.9 1.6E-21 3.5E-26 174.9 9.3 140 87-226 20-217 (258)
138 TIGR03258 PhnT 2-aminoethylpho 99.9 1E-21 2.2E-26 183.8 8.3 141 87-227 19-205 (362)
139 PRK09493 glnQ glutamine ABC tr 99.9 1.2E-21 2.7E-26 173.6 8.4 139 87-226 15-201 (240)
140 PRK11308 dppF dipeptide transp 99.9 1E-21 2.3E-26 181.7 8.1 137 87-226 29-220 (327)
141 PRK15079 oligopeptide ABC tran 99.9 1.6E-21 3.4E-26 180.7 9.3 141 87-227 35-228 (331)
142 PRK13643 cbiO cobalt transport 99.9 1.1E-21 2.4E-26 178.7 7.9 141 87-228 20-211 (288)
143 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2.4E-21 5.1E-26 170.3 9.7 140 86-226 35-207 (224)
144 PRK11300 livG leucine/isoleuci 99.9 2.5E-21 5.4E-26 173.2 10.0 141 87-227 19-220 (255)
145 PRK13543 cytochrome c biogenes 99.8 1.5E-21 3.2E-26 170.3 8.3 141 87-228 25-204 (214)
146 PRK11614 livF leucine/isoleuci 99.8 3.2E-21 6.9E-26 170.7 10.2 140 87-227 19-203 (237)
147 TIGR02323 CP_lyasePhnK phospho 99.8 2.7E-21 5.9E-26 172.8 9.9 140 87-226 17-214 (253)
148 COG1123 ATPase components of v 99.8 2.1E-21 4.4E-26 186.2 9.5 140 87-228 305-497 (539)
149 PRK15112 antimicrobial peptide 99.8 2.9E-21 6.4E-26 174.0 10.1 140 87-226 27-215 (267)
150 TIGR02770 nickel_nikD nickel i 99.8 4.9E-21 1.1E-25 168.9 11.0 138 88-225 1-190 (230)
151 TIGR02324 CP_lyasePhnL phospho 99.8 2.8E-21 6.2E-26 169.5 9.5 139 87-226 22-214 (224)
152 PRK13644 cbiO cobalt transport 99.8 2.5E-21 5.5E-26 175.1 9.3 138 87-225 16-200 (274)
153 PRK13648 cbiO cobalt transport 99.8 2.8E-21 6.1E-26 174.3 9.6 140 87-226 23-208 (269)
154 PRK13638 cbiO cobalt transport 99.8 1E-21 2.2E-26 177.4 6.6 139 87-226 15-201 (271)
155 cd03264 ABC_drug_resistance_li 99.8 3.5E-21 7.6E-26 167.4 9.8 137 87-226 14-194 (211)
156 PRK10895 lipopolysaccharide AB 99.8 2.6E-21 5.6E-26 171.7 9.0 139 87-226 17-202 (241)
157 TIGR01189 ccmA heme ABC export 99.8 2.8E-21 6E-26 166.6 8.9 137 87-224 14-190 (198)
158 COG4619 ABC-type uncharacteriz 99.8 7.8E-21 1.7E-25 155.4 10.9 138 86-223 16-196 (223)
159 PRK13641 cbiO cobalt transport 99.8 2.7E-21 5.9E-26 176.0 9.3 141 87-228 21-212 (287)
160 TIGR03522 GldA_ABC_ATP gliding 99.8 1.7E-21 3.7E-26 178.5 7.9 140 87-228 16-199 (301)
161 PRK11607 potG putrescine trans 99.8 1.9E-21 4.1E-26 183.0 8.3 142 87-228 33-217 (377)
162 PRK11124 artP arginine transpo 99.8 1.8E-21 3.9E-26 172.8 7.7 138 87-225 16-205 (242)
163 PRK13631 cbiO cobalt transport 99.8 5.2E-21 1.1E-25 176.5 11.0 139 87-226 40-241 (320)
164 COG4525 TauB ABC-type taurine 99.8 4.6E-21 1E-25 160.3 9.4 136 86-224 18-196 (259)
165 PRK13649 cbiO cobalt transport 99.8 2.1E-21 4.6E-26 176.1 7.9 139 87-226 21-210 (280)
166 PRK15056 manganese/iron transp 99.8 1.2E-21 2.5E-26 177.2 6.1 140 87-227 21-208 (272)
167 PRK13651 cobalt transporter AT 99.8 1.7E-21 3.6E-26 178.7 7.2 141 87-228 21-232 (305)
168 PRK13632 cbiO cobalt transport 99.8 3.2E-21 7E-26 174.1 8.8 138 87-224 23-206 (271)
169 cd03300 ABC_PotA_N PotA is an 99.8 8.2E-21 1.8E-25 167.6 11.2 140 87-226 14-196 (232)
170 COG4608 AppF ABC-type oligopep 99.8 6.8E-21 1.5E-25 167.8 10.4 142 87-228 27-177 (268)
171 PRK10575 iron-hydroxamate tran 99.8 4.5E-21 9.7E-26 172.7 9.5 141 87-227 25-214 (265)
172 PRK13548 hmuV hemin importer A 99.8 3.5E-21 7.6E-26 172.7 8.7 140 87-226 16-206 (258)
173 PRK13636 cbiO cobalt transport 99.8 5.4E-21 1.2E-25 173.7 10.1 141 87-227 20-208 (283)
174 cd03260 ABC_PstB_phosphate_tra 99.8 6.6E-21 1.4E-25 167.6 10.3 138 87-226 14-205 (227)
175 PRK13633 cobalt transporter AT 99.8 6E-21 1.3E-25 173.2 10.3 140 87-226 24-210 (280)
176 PRK11264 putative amino-acid A 99.8 2.9E-21 6.2E-26 172.3 8.1 138 87-225 17-208 (250)
177 PRK09473 oppD oligopeptide tra 99.8 2.3E-21 5.1E-26 179.6 7.7 140 87-226 30-227 (330)
178 COG3840 ThiQ ABC-type thiamine 99.8 7.6E-21 1.6E-25 157.4 9.8 131 92-222 18-191 (231)
179 COG4175 ProV ABC-type proline/ 99.8 6E-21 1.3E-25 170.1 9.8 141 88-228 43-232 (386)
180 PRK10253 iron-enterobactin tra 99.8 5E-21 1.1E-25 172.3 9.5 142 87-228 21-211 (265)
181 PRK13645 cbiO cobalt transport 99.8 8.2E-21 1.8E-25 173.0 10.5 141 87-227 25-217 (289)
182 PRK15093 antimicrobial peptide 99.8 5.3E-21 1.1E-25 177.4 9.3 142 87-228 21-226 (330)
183 TIGR01277 thiQ thiamine ABC tr 99.8 5.8E-21 1.3E-25 166.4 9.0 139 88-226 13-194 (213)
184 cd03251 ABCC_MsbA MsbA is an e 99.8 8.5E-21 1.8E-25 167.6 10.1 137 87-225 16-201 (234)
185 PRK09544 znuC high-affinity zi 99.8 8.9E-21 1.9E-25 169.4 10.3 142 87-228 18-188 (251)
186 cd03232 ABC_PDR_domain2 The pl 99.8 2.8E-21 6.1E-26 165.9 6.8 134 87-222 21-169 (192)
187 TIGR03740 galliderm_ABC gallid 99.8 4.7E-21 1E-25 168.1 8.3 139 87-226 14-189 (223)
188 PRK10418 nikD nickel transport 99.8 1.5E-20 3.2E-25 168.3 11.6 141 87-227 17-207 (254)
189 PRK11231 fecE iron-dicitrate t 99.8 6.2E-21 1.4E-25 170.7 9.2 140 87-227 16-204 (255)
190 PRK13639 cbiO cobalt transport 99.8 9.5E-21 2.1E-25 171.4 10.4 141 87-228 16-204 (275)
191 cd03297 ABC_ModC_molybdenum_tr 99.8 6.6E-21 1.4E-25 166.2 8.9 135 91-226 16-197 (214)
192 cd03299 ABC_ModC_like Archeal 99.8 1.2E-20 2.5E-25 167.0 10.6 139 88-226 14-195 (235)
193 cd00267 ABC_ATPase ABC (ATP-bi 99.8 1.2E-20 2.6E-25 156.6 10.0 130 87-226 13-145 (157)
194 PRK13640 cbiO cobalt transport 99.8 6.9E-21 1.5E-25 172.9 9.3 139 87-225 21-208 (282)
195 PRK13642 cbiO cobalt transport 99.8 5.5E-21 1.2E-25 173.2 8.6 139 87-225 21-205 (277)
196 cd03252 ABCC_Hemolysin The ABC 99.8 7.8E-21 1.7E-25 168.2 9.4 136 87-224 16-200 (237)
197 cd03233 ABC_PDR_domain1 The pl 99.8 1.5E-20 3.3E-25 162.6 10.8 133 87-219 21-177 (202)
198 COG0444 DppD ABC-type dipeptid 99.8 8E-21 1.7E-25 170.7 9.2 140 87-228 19-221 (316)
199 TIGR03411 urea_trans_UrtD urea 99.8 1.5E-20 3.2E-25 166.9 10.8 138 87-226 16-207 (242)
200 PRK10619 histidine/lysine/argi 99.8 5.7E-21 1.2E-25 171.2 8.1 139 87-226 19-217 (257)
201 PRK10771 thiQ thiamine transpo 99.8 8.6E-21 1.9E-25 167.5 9.2 136 91-226 17-195 (232)
202 PRK10419 nikE nickel transport 99.8 3.8E-21 8.2E-26 173.4 6.9 141 87-227 26-218 (268)
203 PRK11144 modC molybdate transp 99.8 4.2E-21 9E-26 179.5 7.4 137 91-227 16-195 (352)
204 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 1.6E-20 3.5E-25 166.2 10.5 136 87-224 17-201 (238)
205 PRK09984 phosphonate/organopho 99.8 9.1E-21 2E-25 170.3 9.0 142 87-228 18-220 (262)
206 cd03253 ABCC_ATM1_transporter 99.8 1.2E-20 2.7E-25 166.8 9.7 136 87-224 15-199 (236)
207 TIGR00968 3a0106s01 sulfate AB 99.8 8.1E-21 1.8E-25 168.2 8.5 140 87-226 14-196 (237)
208 TIGR02982 heterocyst_DevA ABC 99.8 1.4E-20 3.1E-25 164.8 9.6 136 87-222 19-203 (220)
209 cd03245 ABCC_bacteriocin_expor 99.8 9.4E-21 2E-25 165.7 8.5 136 87-224 18-202 (220)
210 cd03238 ABC_UvrA The excision 99.8 1.8E-20 4E-25 158.3 9.9 132 86-223 8-151 (176)
211 PRK15439 autoinducer 2 ABC tra 99.8 7.4E-21 1.6E-25 186.2 8.6 140 87-227 25-206 (510)
212 TIGR03873 F420-0_ABC_ATP propo 99.8 1E-20 2.2E-25 169.4 8.8 141 87-228 15-204 (256)
213 COG1117 PstB ABC-type phosphat 99.8 1E-20 2.2E-25 160.4 8.1 137 87-225 21-212 (253)
214 TIGR01978 sufC FeS assembly AT 99.8 1.5E-20 3.2E-25 166.9 9.6 139 87-226 14-209 (243)
215 TIGR03499 FlhF flagellar biosy 99.8 6.3E-19 1.4E-23 159.9 20.2 172 7-191 107-282 (282)
216 PRK13541 cytochrome c biogenes 99.8 1.4E-20 3.1E-25 161.8 8.9 136 91-227 18-189 (195)
217 cd03254 ABCC_Glucan_exporter_l 99.8 1.6E-20 3.5E-25 165.2 9.4 136 87-224 17-201 (229)
218 TIGR02142 modC_ABC molybdenum 99.8 7E-21 1.5E-25 178.2 7.5 137 91-227 15-198 (354)
219 cd03244 ABCC_MRP_domain2 Domai 99.8 2.4E-20 5.1E-25 163.3 10.3 137 87-225 18-202 (221)
220 TIGR00972 3a0107s01c2 phosphat 99.8 3.1E-20 6.8E-25 165.4 11.0 138 87-226 15-208 (247)
221 cd03248 ABCC_TAP TAP, the Tran 99.8 2.4E-20 5.2E-25 163.9 9.9 137 87-225 28-213 (226)
222 PRK14247 phosphate ABC transpo 99.8 3.6E-20 7.8E-25 165.2 10.9 138 87-226 17-210 (250)
223 PRK10762 D-ribose transporter 99.8 1.6E-20 3.4E-25 183.6 8.8 141 87-228 18-208 (501)
224 PRK14269 phosphate ABC transpo 99.8 4.4E-20 9.4E-25 164.4 10.9 138 87-226 16-206 (246)
225 COG1119 ModF ABC-type molybden 99.8 3.2E-20 7E-25 160.6 9.6 140 86-227 44-239 (257)
226 PRK14267 phosphate ABC transpo 99.8 4.6E-20 1E-24 164.8 10.9 138 87-226 18-213 (253)
227 COG2274 SunT ABC-type bacterio 99.8 3.1E-20 6.6E-25 185.9 10.7 136 87-224 487-671 (709)
228 PRK14235 phosphate transporter 99.8 3.9E-20 8.5E-25 166.7 10.4 138 87-226 33-227 (267)
229 cd03369 ABCC_NFT1 Domain 2 of 99.8 3.8E-20 8.3E-25 160.5 9.9 137 87-225 22-188 (207)
230 COG1101 PhnK ABC-type uncharac 99.8 5.4E-20 1.2E-24 156.1 10.5 144 86-229 19-217 (263)
231 PRK14242 phosphate transporter 99.8 5.2E-20 1.1E-24 164.5 10.8 138 87-226 20-213 (253)
232 cd03237 ABC_RNaseL_inhibitor_d 99.8 4.2E-20 9E-25 164.6 10.1 139 88-226 9-181 (246)
233 PRK10938 putative molybdenum t 99.8 4.4E-20 9.5E-25 180.0 11.1 140 87-227 17-201 (490)
234 cd03234 ABCG_White The White s 99.8 7.8E-20 1.7E-24 160.7 11.5 136 86-222 20-204 (226)
235 cd03250 ABCC_MRP_domain1 Domai 99.8 3.8E-20 8.2E-25 160.2 9.3 139 87-226 19-193 (204)
236 PRK13547 hmuV hemin importer A 99.8 3.6E-20 7.7E-25 167.4 9.2 140 87-226 15-220 (272)
237 PRK14273 phosphate ABC transpo 99.8 6.2E-20 1.3E-24 164.2 10.6 138 87-226 21-214 (254)
238 PRK09700 D-allose transporter 99.8 3E-20 6.6E-25 181.9 9.3 141 87-228 19-212 (510)
239 PRK14259 phosphate ABC transpo 99.8 6.3E-20 1.4E-24 165.6 10.6 140 87-228 27-220 (269)
240 CHL00131 ycf16 sulfate ABC tra 99.8 6E-20 1.3E-24 163.9 10.4 138 87-225 21-215 (252)
241 PRK14241 phosphate transporter 99.8 6E-20 1.3E-24 164.7 10.3 138 87-226 18-212 (258)
242 PRK09580 sufC cysteine desulfu 99.8 7.6E-20 1.7E-24 162.8 10.9 138 87-225 15-209 (248)
243 COG1129 MglA ABC-type sugar tr 99.8 3.3E-20 7.1E-25 176.8 9.0 141 87-228 22-212 (500)
244 PRK10261 glutathione transport 99.8 2E-20 4.2E-25 187.2 7.7 142 87-228 338-531 (623)
245 PRK14268 phosphate ABC transpo 99.8 7.7E-20 1.7E-24 164.0 10.7 139 87-227 26-219 (258)
246 PRK15134 microcin C ABC transp 99.8 3.6E-20 7.8E-25 182.2 9.4 141 87-227 23-223 (529)
247 COG1134 TagH ABC-type polysacc 99.8 4.5E-20 9.7E-25 159.8 8.7 141 87-228 41-214 (249)
248 PRK15177 Vi polysaccharide exp 99.8 1.4E-20 3E-25 164.2 5.7 137 88-226 2-168 (213)
249 COG3845 ABC-type uncharacteriz 99.8 4.9E-20 1.1E-24 172.8 9.6 140 88-228 19-207 (501)
250 PRK10982 galactose/methyl gala 99.8 3.3E-20 7.2E-25 180.8 8.7 140 87-227 12-200 (491)
251 PRK10744 pstB phosphate transp 99.8 9.3E-20 2E-24 163.6 10.8 137 87-225 27-219 (260)
252 PRK13546 teichoic acids export 99.8 6.8E-20 1.5E-24 164.8 9.8 139 87-226 38-208 (264)
253 PRK03695 vitamin B12-transport 99.8 7.8E-20 1.7E-24 163.1 9.9 138 88-227 11-199 (248)
254 PRK13549 xylose transporter AT 99.8 4.5E-20 9.7E-25 180.6 9.2 141 87-228 19-210 (506)
255 COG1123 ATPase components of v 99.8 5.4E-20 1.2E-24 176.5 9.3 142 87-228 23-222 (539)
256 PRK13545 tagH teichoic acids e 99.8 7E-20 1.5E-24 176.3 9.8 139 87-226 38-208 (549)
257 PRK14248 phosphate ABC transpo 99.8 1.4E-19 3E-24 163.2 11.1 138 87-226 35-228 (268)
258 PRK11288 araG L-arabinose tran 99.8 4.4E-20 9.6E-25 180.4 8.4 140 87-227 18-206 (501)
259 TIGR02633 xylG D-xylose ABC tr 99.8 1.1E-19 2.4E-24 177.5 11.2 141 87-228 274-470 (500)
260 PRK10762 D-ribose transporter 99.8 1.3E-19 2.8E-24 177.1 11.4 140 88-228 267-462 (501)
261 PRK10982 galactose/methyl gala 99.8 1.3E-19 2.7E-24 176.8 11.1 141 87-228 262-458 (491)
262 PRK14251 phosphate ABC transpo 99.8 1.4E-19 3E-24 161.6 10.5 138 87-226 18-211 (251)
263 PRK13549 xylose transporter AT 99.8 1.5E-19 3.2E-24 177.0 11.5 141 87-228 276-472 (506)
264 PRK14256 phosphate ABC transpo 99.8 1.9E-19 4E-24 160.9 11.1 139 87-227 18-213 (252)
265 PRK11288 araG L-arabinose tran 99.8 1.4E-19 3E-24 176.9 11.2 141 87-228 267-463 (501)
266 PRK09700 D-allose transporter 99.8 1.5E-19 3.3E-24 177.0 11.4 141 87-228 277-476 (510)
267 PRK14270 phosphate ABC transpo 99.8 2E-19 4.4E-24 160.5 11.2 138 87-226 18-211 (251)
268 PRK14260 phosphate ABC transpo 99.8 1.7E-19 3.7E-24 161.8 10.6 139 87-227 21-215 (259)
269 cd03290 ABCC_SUR1_N The SUR do 99.8 1.5E-19 3.3E-24 158.0 10.1 137 87-224 15-205 (218)
270 PRK14244 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 161.5 10.1 138 87-226 19-213 (251)
271 PRK14274 phosphate ABC transpo 99.8 1.8E-19 4E-24 161.6 10.8 138 87-226 26-219 (259)
272 PRK14262 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 161.3 10.0 138 87-226 17-210 (250)
273 PRK14240 phosphate transporter 99.8 1.7E-19 3.7E-24 160.9 10.4 138 87-226 17-210 (250)
274 PRK14258 phosphate ABC transpo 99.8 2.1E-19 4.5E-24 161.5 11.0 142 87-228 21-218 (261)
275 PRK14263 phosphate ABC transpo 99.8 1.6E-19 3.6E-24 162.2 10.3 138 87-226 22-213 (261)
276 TIGR02868 CydC thiol reductant 99.8 1.1E-19 2.3E-24 178.8 9.8 132 87-221 349-529 (529)
277 PRK14254 phosphate ABC transpo 99.8 1.5E-19 3.3E-24 164.4 10.1 138 87-226 53-244 (285)
278 cd03236 ABC_RNaseL_inhibitor_d 99.8 1.8E-19 4E-24 161.2 10.4 138 88-228 16-206 (255)
279 cd03288 ABCC_SUR2 The SUR doma 99.8 1.9E-19 4.1E-24 161.4 10.4 137 87-225 35-219 (257)
280 PRK14238 phosphate transporter 99.8 1.3E-19 2.8E-24 163.7 9.3 140 87-228 38-233 (271)
281 PRK11176 lipid transporter ATP 99.8 1.9E-19 4.2E-24 178.9 11.4 136 87-224 357-542 (582)
282 PRK10261 glutathione transport 99.8 1.5E-19 3.2E-24 180.9 10.6 142 87-228 30-236 (623)
283 PRK14237 phosphate transporter 99.8 2.3E-19 4.9E-24 161.8 10.7 139 87-227 34-228 (267)
284 PRK15439 autoinducer 2 ABC tra 99.8 2.2E-19 4.7E-24 175.9 11.3 140 88-228 278-470 (510)
285 PRK14249 phosphate ABC transpo 99.8 2.4E-19 5.3E-24 160.0 10.7 140 87-228 18-213 (251)
286 PRK14243 phosphate transporter 99.8 2.7E-19 5.9E-24 161.0 11.0 139 87-227 24-216 (264)
287 PRK14253 phosphate ABC transpo 99.8 1.7E-19 3.6E-24 160.9 9.3 138 87-226 17-209 (249)
288 KOG0058|consensus 99.8 1.6E-19 3.4E-24 176.2 9.8 138 87-226 482-668 (716)
289 PRK11174 cysteine/glutathione 99.8 2.4E-19 5.2E-24 178.5 11.4 134 87-223 364-546 (588)
290 TIGR03771 anch_rpt_ABC anchore 99.8 3.5E-19 7.7E-24 156.3 11.1 130 94-226 1-178 (223)
291 PRK14272 phosphate ABC transpo 99.8 1.2E-19 2.5E-24 162.1 8.2 139 87-227 18-213 (252)
292 PRK14245 phosphate ABC transpo 99.8 2.8E-19 6.1E-24 159.6 10.6 139 87-227 17-211 (250)
293 COG4598 HisP ABC-type histidin 99.8 3.2E-19 6.9E-24 147.6 9.9 147 81-228 12-219 (256)
294 PRK14239 phosphate transporter 99.8 2.9E-19 6.3E-24 159.5 10.6 138 87-226 19-212 (252)
295 TIGR03269 met_CoM_red_A2 methy 99.8 2.1E-19 4.5E-24 176.5 10.5 141 87-227 298-494 (520)
296 PRK14275 phosphate ABC transpo 99.8 2E-19 4.4E-24 163.7 9.6 138 87-226 53-246 (286)
297 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 2.5E-19 5.3E-24 181.4 11.3 133 87-223 467-647 (686)
298 COG4988 CydD ABC-type transpor 99.8 3.1E-19 6.7E-24 170.9 11.2 139 87-227 335-521 (559)
299 PRK14236 phosphate transporter 99.8 3.2E-19 6.8E-24 161.2 10.7 139 87-227 39-233 (272)
300 PRK15134 microcin C ABC transp 99.8 8.1E-20 1.8E-24 179.7 7.4 140 87-227 300-492 (529)
301 cd03289 ABCC_CFTR2 The CFTR su 99.8 3E-19 6.5E-24 161.4 10.5 137 87-226 18-202 (275)
302 PRK14271 phosphate ABC transpo 99.8 3.4E-19 7.4E-24 161.3 10.8 139 87-227 35-228 (276)
303 PRK14261 phosphate ABC transpo 99.8 1.1E-19 2.5E-24 162.3 7.2 138 87-226 20-213 (253)
304 PRK14246 phosphate ABC transpo 99.8 4.8E-19 1.1E-23 158.8 11.1 138 87-226 24-217 (257)
305 PRK14265 phosphate ABC transpo 99.8 4E-19 8.6E-24 160.8 10.3 138 87-226 34-225 (274)
306 PRK10790 putative multidrug tr 99.8 3.3E-19 7.1E-24 177.6 10.7 136 87-224 355-538 (592)
307 TIGR02857 CydD thiol reductant 99.8 3.3E-19 7.1E-24 175.4 10.5 136 87-224 336-520 (529)
308 TIGR03269 met_CoM_red_A2 methy 99.8 1.9E-19 4.2E-24 176.7 8.6 141 87-227 14-235 (520)
309 TIGR02633 xylG D-xylose ABC tr 99.8 3.7E-19 8.1E-24 173.9 10.5 140 87-227 15-207 (500)
310 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 3.2E-19 6.8E-24 181.3 10.1 134 87-224 493-675 (710)
311 PRK10636 putative ABC transpor 99.8 4.1E-19 8.9E-24 178.0 10.5 137 87-227 15-212 (638)
312 TIGR03375 type_I_sec_LssB type 99.8 4.5E-19 9.8E-24 179.7 10.9 135 87-223 479-662 (694)
313 PRK14252 phosphate ABC transpo 99.8 4.1E-19 8.8E-24 159.9 9.4 138 87-226 30-225 (265)
314 PRK14255 phosphate ABC transpo 99.8 3.9E-19 8.4E-24 158.8 9.1 139 87-227 19-213 (252)
315 PRK14264 phosphate ABC transpo 99.8 6E-19 1.3E-23 161.9 10.2 138 87-226 59-264 (305)
316 PRK11147 ABC transporter ATPas 99.8 4.8E-19 1E-23 177.6 10.4 137 87-227 17-219 (635)
317 PRK15064 ABC transporter ATP-b 99.8 6.6E-19 1.4E-23 173.3 11.2 137 87-227 15-218 (530)
318 COG4133 CcmA ABC-type transpor 99.8 1.1E-18 2.5E-23 145.2 10.5 137 87-224 16-193 (209)
319 PRK10522 multidrug transporter 99.8 9E-19 1.9E-23 172.9 11.6 136 87-222 337-511 (547)
320 TIGR01193 bacteriocin_ABC ABC- 99.8 5.4E-19 1.2E-23 179.5 10.3 134 87-223 488-671 (708)
321 PRK11160 cysteine/glutathione 99.8 6.4E-19 1.4E-23 174.9 10.1 135 87-223 354-536 (574)
322 PRK10938 putative molybdenum t 99.8 8.9E-19 1.9E-23 170.8 10.9 140 87-226 274-467 (490)
323 PRK14266 phosphate ABC transpo 99.8 6.5E-19 1.4E-23 157.2 9.1 139 87-227 17-211 (250)
324 TIGR02203 MsbA_lipidA lipid A 99.8 8.7E-19 1.9E-23 173.8 10.8 135 87-223 346-530 (571)
325 COG4107 PhnK ABC-type phosphon 99.8 9.2E-19 2E-23 144.2 8.8 144 80-223 11-214 (258)
326 PRK13657 cyclic beta-1,2-gluca 99.8 1E-18 2.2E-23 174.0 10.9 135 87-223 349-532 (588)
327 COG4987 CydC ABC-type transpor 99.8 1.3E-18 2.7E-23 164.7 10.8 135 87-223 352-535 (573)
328 TIGR01842 type_I_sec_PrtD type 99.8 1.4E-18 3.1E-23 171.4 11.7 135 87-222 332-515 (544)
329 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.5E-18 3.2E-23 171.7 11.7 136 87-222 356-532 (555)
330 PRK10789 putative multidrug tr 99.8 1.3E-18 2.8E-23 172.6 11.1 135 87-223 329-512 (569)
331 PRK15064 ABC transporter ATP-b 99.8 9.6E-19 2.1E-23 172.1 9.6 137 87-227 333-501 (530)
332 cd03291 ABCC_CFTR1 The CFTR su 99.8 1.7E-18 3.6E-23 157.1 9.9 137 86-224 50-222 (282)
333 TIGR02204 MsbA_rel ABC transpo 99.8 1.6E-18 3.4E-23 172.2 10.6 135 87-223 354-537 (576)
334 TIGR01192 chvA glucan exporter 99.8 1.8E-18 3.8E-23 172.1 10.9 136 87-224 349-533 (585)
335 TIGR01846 type_I_sec_HlyB type 99.8 2.2E-18 4.7E-23 174.7 11.7 136 87-224 471-655 (694)
336 TIGR00958 3a01208 Conjugate Tr 99.8 1.2E-18 2.6E-23 176.8 9.8 133 87-223 495-676 (711)
337 PRK13409 putative ATPase RIL; 99.8 7.3E-19 1.6E-23 174.3 7.8 140 89-228 355-521 (590)
338 PRK10636 putative ABC transpor 99.8 1.4E-18 3E-23 174.2 9.8 138 87-228 326-494 (638)
339 COG1132 MdlB ABC-type multidru 99.8 2.4E-18 5.3E-23 170.6 11.4 135 87-223 343-526 (567)
340 KOG0055|consensus 99.8 2.3E-18 5E-23 176.7 11.5 138 87-226 367-553 (1228)
341 PRK14257 phosphate ABC transpo 99.8 1.3E-18 2.8E-23 161.1 8.2 138 87-226 96-289 (329)
342 KOG0057|consensus 99.8 2.1E-18 4.5E-23 163.4 9.3 138 87-227 366-552 (591)
343 TIGR01257 rim_protein retinal- 99.8 2.1E-18 4.5E-23 187.4 10.2 139 87-226 1953-2135(2272)
344 PRK11147 ABC transporter ATPas 99.7 3.1E-18 6.7E-23 171.8 10.0 136 87-227 333-503 (635)
345 PRK13409 putative ATPase RIL; 99.7 2.2E-18 4.7E-23 170.9 8.2 148 77-227 75-277 (590)
346 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 4.1E-18 8.8E-23 168.4 9.9 137 87-227 336-506 (552)
347 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 5.9E-18 1.3E-22 167.3 10.9 137 87-227 19-224 (552)
348 PRK11819 putative ABC transpor 99.7 6.2E-18 1.3E-22 167.2 10.7 137 87-227 21-226 (556)
349 PRK10535 macrolide transporter 99.7 3.7E-18 8E-23 171.5 9.2 138 87-225 22-208 (648)
350 PLN03211 ABC transporter G-25; 99.7 5.3E-18 1.2E-22 170.1 9.9 136 86-222 81-267 (659)
351 PRK11819 putative ABC transpor 99.7 5.9E-18 1.3E-22 167.4 10.0 138 87-228 338-509 (556)
352 COG0488 Uup ATPase components 99.7 7.6E-18 1.7E-22 163.8 10.1 137 86-226 16-215 (530)
353 TIGR01257 rim_protein retinal- 99.7 4.1E-18 8.9E-23 185.1 8.9 138 87-226 944-1125(2272)
354 PLN03073 ABC transporter F fam 99.7 7.4E-18 1.6E-22 170.2 10.2 136 88-227 524-690 (718)
355 COG4618 ArpD ABC-type protease 99.7 1.4E-17 3.1E-22 156.5 11.0 133 87-222 350-533 (580)
356 COG4674 Uncharacterized ABC-ty 99.7 1.8E-18 4E-23 144.8 4.4 139 88-228 20-213 (249)
357 PTZ00265 multidrug resistance 99.7 9.1E-18 2E-22 180.7 10.8 136 87-222 1182-1420(1466)
358 COG0396 sufC Cysteine desulfur 99.7 1.3E-17 2.9E-22 143.0 9.3 135 86-221 17-204 (251)
359 COG4172 ABC-type uncharacteriz 99.7 1.1E-17 2.5E-22 153.4 8.8 137 87-225 301-491 (534)
360 PTZ00265 multidrug resistance 99.7 2E-17 4.3E-22 178.1 11.8 138 87-224 399-643 (1466)
361 PLN03130 ABC transporter C fam 99.7 1.5E-17 3.3E-22 180.5 10.7 138 87-226 1253-1438(1622)
362 PLN03232 ABC transporter C fam 99.7 1.5E-17 3.3E-22 179.9 10.3 138 87-226 1250-1435(1495)
363 PF00005 ABC_tran: ABC transpo 99.7 5.9E-18 1.3E-22 136.9 5.0 103 89-191 1-136 (137)
364 COG4167 SapF ABC-type antimicr 99.7 5E-17 1.1E-21 135.0 10.1 134 87-220 27-209 (267)
365 TIGR01187 potA spermidine/putr 99.7 1.1E-17 2.4E-22 154.9 6.7 124 104-227 1-167 (325)
366 COG4148 ModC ABC-type molybdat 99.7 5.6E-18 1.2E-22 148.9 4.3 137 91-227 16-195 (352)
367 PLN03073 ABC transporter F fam 99.7 2.6E-17 5.7E-22 166.2 9.3 136 87-226 191-406 (718)
368 TIGR00957 MRP_assoc_pro multi 99.7 3.9E-17 8.4E-22 177.1 10.8 138 87-226 1300-1485(1522)
369 TIGR00954 3a01203 Peroxysomal 99.7 4.4E-17 9.5E-22 163.9 10.0 133 87-223 466-641 (659)
370 COG4172 ABC-type uncharacteriz 99.7 6.9E-17 1.5E-21 148.3 10.2 142 87-228 24-225 (534)
371 COG4161 ArtP ABC-type arginine 99.7 1.4E-16 3E-21 129.9 10.1 136 88-224 17-204 (242)
372 PTZ00243 ABC transporter; Prov 99.7 7.2E-17 1.6E-21 174.9 10.1 137 87-225 1324-1509(1560)
373 COG0488 Uup ATPase components 99.7 9.2E-17 2E-21 156.3 9.6 138 86-227 335-502 (530)
374 TIGR00955 3a01204 The Eye Pigm 99.7 1E-16 2.3E-21 160.2 10.1 136 86-222 38-227 (617)
375 KOG0055|consensus 99.7 2.4E-16 5.3E-21 162.0 11.3 135 87-223 1004-1187(1228)
376 TIGR01271 CFTR_protein cystic 99.7 2.2E-16 4.7E-21 170.9 10.9 138 86-226 1232-1417(1490)
377 COG4778 PhnL ABC-type phosphon 99.7 4E-16 8.7E-21 128.2 9.6 134 87-221 25-212 (235)
378 KOG0056|consensus 99.7 2.5E-16 5.4E-21 147.5 9.3 133 86-221 551-733 (790)
379 TIGR00956 3a01205 Pleiotropic 99.7 2.5E-16 5.4E-21 169.3 10.3 136 87-223 777-964 (1394)
380 cd03270 ABC_UvrA_I The excisio 99.6 8.2E-16 1.8E-20 135.3 9.3 56 167-223 141-201 (226)
381 PLN03140 ABC transporter G fam 99.6 6.5E-16 1.4E-20 166.0 10.4 135 87-222 894-1080(1470)
382 COG4136 ABC-type uncharacteriz 99.6 9.9E-16 2.1E-20 123.5 8.2 138 88-225 17-199 (213)
383 cd03278 ABC_SMC_barmotin Barmo 99.6 2.2E-16 4.7E-21 136.1 4.4 131 90-223 14-178 (197)
384 KOG0059|consensus 99.6 1.7E-15 3.7E-20 156.7 10.4 137 88-225 580-762 (885)
385 TIGR01271 CFTR_protein cystic 99.6 1.6E-15 3.6E-20 164.2 10.3 138 86-225 439-612 (1490)
386 COG4138 BtuD ABC-type cobalami 99.6 2.2E-15 4.8E-20 124.3 8.6 138 89-228 15-199 (248)
387 TIGR00956 3a01205 Pleiotropic 99.6 9E-16 2E-20 165.0 7.9 135 87-221 75-270 (1394)
388 COG4615 PvdE ABC-type sideroph 99.6 3.9E-15 8.5E-20 136.5 10.2 135 89-223 339-511 (546)
389 TIGR00957 MRP_assoc_pro multi 99.6 2.4E-15 5.3E-20 163.2 10.1 140 87-226 652-827 (1522)
390 PLN03140 ABC transporter G fam 99.6 5.6E-16 1.2E-20 166.6 4.8 135 87-221 179-397 (1470)
391 KOG0061|consensus 99.6 4.5E-15 9.7E-20 147.8 8.9 136 85-221 42-230 (613)
392 KOG0054|consensus 99.6 1E-14 2.2E-19 153.1 11.6 141 85-227 1152-1340(1381)
393 PLN03232 ABC transporter C fam 99.6 9.2E-15 2E-19 158.5 10.3 136 87-224 631-803 (1495)
394 PTZ00243 ABC transporter; Prov 99.6 9.2E-15 2E-19 158.7 10.0 138 87-225 674-846 (1560)
395 PLN03130 ABC transporter C fam 99.5 1.6E-14 3.4E-19 157.2 11.0 136 87-224 631-803 (1622)
396 COG5265 ATM1 ABC-type transpor 99.5 1.6E-14 3.4E-19 133.5 8.2 139 86-226 276-463 (497)
397 cd03272 ABC_SMC3_euk Eukaryoti 99.5 1E-13 2.3E-18 123.0 10.5 52 167-220 162-220 (243)
398 cd03240 ABC_Rad50 The catalyti 99.5 2.3E-14 5E-19 124.2 5.4 51 173-223 131-185 (204)
399 COG4170 SapD ABC-type antimicr 99.5 6.6E-14 1.4E-18 118.9 6.9 140 87-226 21-224 (330)
400 KOG0927|consensus 99.5 8.2E-14 1.8E-18 132.2 7.7 134 88-225 405-570 (614)
401 KOG0062|consensus 99.5 4.1E-14 8.8E-19 133.5 5.6 133 88-225 95-259 (582)
402 cd03279 ABC_sbcCD SbcCD and ot 99.5 2.4E-14 5.3E-19 124.8 3.6 58 168-226 128-198 (213)
403 cd03283 ABC_MutS-like MutS-lik 99.4 1.2E-13 2.7E-18 119.1 5.1 128 87-224 15-151 (199)
404 cd03280 ABC_MutS2 MutS2 homolo 99.4 3E-13 6.5E-18 116.8 7.4 127 89-222 17-152 (200)
405 cd03243 ABC_MutS_homologs The 99.4 3.5E-13 7.6E-18 116.5 7.8 129 91-225 21-155 (202)
406 KOG0066|consensus 99.4 5.7E-13 1.2E-17 123.8 8.2 130 89-228 603-768 (807)
407 KOG2355|consensus 99.4 4.6E-13 9.9E-18 113.4 6.7 135 87-221 28-208 (291)
408 COG1245 Predicted ATPase, RNas 99.4 8.9E-13 1.9E-17 123.1 9.1 128 96-223 364-518 (591)
409 cd03276 ABC_SMC6_euk Eukaryoti 99.4 3E-12 6.5E-17 110.4 11.7 136 90-227 13-182 (198)
410 cd03271 ABC_UvrA_II The excisi 99.4 3.3E-12 7.2E-17 114.4 11.3 54 170-224 176-235 (261)
411 TIGR02858 spore_III_AA stage I 99.4 2E-12 4.4E-17 116.3 9.5 118 100-222 112-230 (270)
412 KOG0927|consensus 99.3 1.3E-12 2.9E-17 124.1 7.0 135 87-224 89-282 (614)
413 cd03227 ABC_Class2 ABC-type Cl 99.3 1.3E-12 2.8E-17 109.1 6.0 125 91-224 13-144 (162)
414 COG4178 ABC-type uncharacteriz 99.3 2.7E-12 5.9E-17 125.2 8.4 133 87-222 407-575 (604)
415 cd03275 ABC_SMC1_euk Eukaryoti 99.3 2.6E-12 5.6E-17 114.6 7.7 53 170-223 162-221 (247)
416 cd03273 ABC_SMC2_euk Eukaryoti 99.3 5.3E-12 1.1E-16 112.8 8.9 51 169-221 172-229 (251)
417 cd03282 ABC_MSH4_euk MutS4 hom 99.3 4.3E-12 9.4E-17 109.9 7.1 132 87-224 17-154 (204)
418 cd03274 ABC_SMC4_euk Eukaryoti 99.3 5.1E-12 1.1E-16 110.1 7.5 51 169-221 133-190 (212)
419 COG2401 ABC-type ATPase fused 99.3 5.1E-12 1.1E-16 116.9 7.8 137 86-222 396-569 (593)
420 KOG0054|consensus 99.3 8.1E-12 1.7E-16 131.5 9.4 137 87-225 535-707 (1381)
421 COG1129 MglA ABC-type sugar tr 99.3 1.8E-11 4E-16 117.2 9.5 139 89-228 275-468 (500)
422 cd03287 ABC_MSH3_euk MutS3 hom 99.2 3.7E-11 8E-16 105.3 8.6 131 87-224 19-157 (222)
423 cd03284 ABC_MutS1 MutS1 homolo 99.2 5.2E-11 1.1E-15 104.1 9.3 35 88-123 20-54 (216)
424 cd03281 ABC_MSH5_euk MutS5 hom 99.2 4.2E-11 9.2E-16 104.4 8.6 132 89-226 19-159 (213)
425 KOG0065|consensus 99.2 7E-12 1.5E-16 129.8 4.1 134 87-221 805-990 (1391)
426 cd03239 ABC_SMC_head The struc 99.2 5.5E-11 1.2E-15 100.8 8.2 129 93-223 16-160 (178)
427 smart00534 MUTSac ATPase domai 99.1 1.3E-10 2.7E-15 99.2 7.2 117 101-223 1-124 (185)
428 cd03277 ABC_SMC5_euk Eukaryoti 99.1 1.3E-10 2.9E-15 101.3 7.4 54 175-228 142-199 (213)
429 cd03285 ABC_MSH2_euk MutS2 hom 99.1 1.2E-10 2.7E-15 102.1 7.2 126 87-220 18-152 (222)
430 TIGR00750 lao LAO/AO transport 99.1 2.3E-09 5.1E-14 98.3 14.9 108 88-195 23-140 (300)
431 PRK00635 excinuclease ABC subu 99.1 5.7E-10 1.2E-14 120.7 10.5 50 174-224 820-875 (1809)
432 COG1245 Predicted ATPase, RNas 99.1 1.2E-10 2.6E-15 109.1 4.6 49 173-222 223-274 (591)
433 TIGR00630 uvra excinuclease AB 99.0 1.1E-09 2.5E-14 113.1 11.4 50 174-224 839-894 (924)
434 PRK00349 uvrA excinuclease ABC 99.0 8.9E-10 1.9E-14 114.0 10.5 51 173-224 840-896 (943)
435 TIGR03238 dnd_assoc_3 dnd syst 99.0 2.1E-10 4.5E-15 109.2 5.3 70 77-148 10-82 (504)
436 cd03286 ABC_MSH6_euk MutS6 hom 99.0 4.3E-10 9.2E-15 98.3 6.6 133 87-227 18-159 (218)
437 cd01120 RecA-like_NTPases RecA 99.0 2.2E-09 4.7E-14 88.2 10.5 122 101-222 1-138 (165)
438 TIGR01069 mutS2 MutS2 family p 99.0 2.9E-10 6.2E-15 116.0 5.7 126 92-224 314-448 (771)
439 KOG0066|consensus 99.0 6.3E-10 1.4E-14 103.8 7.2 137 88-228 279-476 (807)
440 TIGR02788 VirB11 P-type DNA tr 99.0 5.1E-10 1.1E-14 103.0 6.6 116 92-221 137-253 (308)
441 cd01130 VirB11-like_ATPase Typ 99.0 5.3E-10 1.2E-14 95.4 5.6 91 94-193 20-112 (186)
442 cd00820 PEPCK_HprK Phosphoenol 99.0 4.5E-10 9.8E-15 86.7 4.6 47 87-139 3-49 (107)
443 cd01131 PilT Pilus retraction 99.0 2.2E-09 4.9E-14 92.5 9.1 106 101-222 3-110 (198)
444 cd03114 ArgK-like The function 99.0 1E-08 2.3E-13 84.3 12.3 38 101-138 1-38 (148)
445 KOG0060|consensus 99.0 2.3E-09 4.9E-14 103.1 8.9 132 88-220 450-626 (659)
446 smart00382 AAA ATPases associa 98.9 1.2E-08 2.6E-13 80.7 10.5 88 99-192 2-89 (148)
447 PRK08533 flagellar accessory p 98.9 1.2E-08 2.6E-13 90.0 11.3 126 95-223 20-164 (230)
448 PRK09435 membrane ATPase/prote 98.9 8.8E-08 1.9E-12 88.6 16.6 100 97-196 54-163 (332)
449 KOG0062|consensus 98.9 2.5E-09 5.3E-14 101.6 6.4 130 92-228 383-546 (582)
450 cd03241 ABC_RecN RecN ATPase i 98.9 1.1E-08 2.4E-13 92.7 9.9 49 173-223 180-235 (276)
451 TIGR01420 pilT_fam pilus retra 98.9 9.6E-09 2.1E-13 95.9 9.2 107 97-219 120-228 (343)
452 smart00053 DYNc Dynamin, GTPas 98.8 2.8E-08 6E-13 88.0 10.1 163 96-270 24-218 (240)
453 PTZ00132 GTP-binding nuclear p 98.8 3.3E-08 7.2E-13 86.0 9.9 37 172-208 161-205 (215)
454 PRK13695 putative NTPase; Prov 98.8 2.4E-08 5.1E-13 84.2 8.3 120 101-221 2-136 (174)
455 COG3845 ABC-type uncharacteriz 98.8 3.8E-08 8.2E-13 93.4 10.2 138 89-228 274-470 (501)
456 PRK07721 fliI flagellum-specif 98.7 5.6E-08 1.2E-12 93.1 9.9 51 87-138 147-197 (438)
457 cd01125 repA Hexameric Replica 98.7 1.3E-07 2.9E-12 83.7 11.4 124 99-222 1-160 (239)
458 PRK06067 flagellar accessory p 98.7 1.7E-07 3.6E-12 82.8 11.7 124 96-221 22-165 (234)
459 KOG0064|consensus 98.7 1.8E-08 3.9E-13 96.1 5.2 134 89-223 498-671 (728)
460 cd01124 KaiC KaiC is a circadi 98.7 1.3E-07 2.8E-12 80.1 9.8 122 101-223 1-142 (187)
461 PRK12337 2-phosphoglycerate ki 98.7 8.6E-08 1.9E-12 91.5 9.2 103 32-138 178-290 (475)
462 COG3910 Predicted ATPase [Gene 98.7 1.5E-07 3.3E-12 79.1 9.3 125 100-226 38-193 (233)
463 PRK00409 recombination and DNA 98.6 5.4E-08 1.2E-12 99.7 6.1 180 93-283 320-510 (782)
464 PF13481 AAA_25: AAA domain; P 98.6 2.9E-07 6.3E-12 78.4 9.2 124 96-219 29-187 (193)
465 PTZ00035 Rad51 protein; Provis 98.6 1.6E-06 3.6E-11 80.6 14.9 174 40-219 58-266 (337)
466 PRK09183 transposase/IS protei 98.6 2.6E-07 5.7E-12 82.9 9.1 45 89-134 93-137 (259)
467 cd01121 Sms Sms (bacterial rad 98.6 5.5E-07 1.2E-11 84.8 11.4 116 96-219 79-208 (372)
468 KOG0063|consensus 98.5 2E-07 4.3E-12 87.2 7.6 134 90-223 353-519 (592)
469 PRK09270 nucleoside triphospha 98.5 2E-07 4.4E-12 82.1 7.2 43 97-139 31-74 (229)
470 cd01122 GP4d_helicase GP4d_hel 98.5 1.2E-06 2.7E-11 78.8 12.2 50 88-137 19-69 (271)
471 TIGR00554 panK_bact pantothena 98.5 2.1E-07 4.5E-12 84.7 5.5 43 97-139 60-104 (290)
472 cd00009 AAA The AAA+ (ATPases 98.5 6.5E-07 1.4E-11 71.4 7.9 92 98-206 18-111 (151)
473 PRK06793 fliI flagellum-specif 98.5 9.9E-07 2.1E-11 84.2 10.2 50 88-138 146-195 (432)
474 PRK00635 excinuclease ABC subu 98.5 2E-07 4.3E-12 101.4 6.0 52 174-226 1710-1767(1809)
475 cd03242 ABC_RecF RecF is a rec 98.4 3.1E-07 6.7E-12 83.0 6.2 33 90-123 13-45 (270)
476 cd01394 radB RadB. The archaea 98.4 3.9E-06 8.5E-11 73.1 12.9 123 96-219 16-156 (218)
477 TIGR00416 sms DNA repair prote 98.4 1.3E-06 2.9E-11 84.4 10.3 118 96-221 91-222 (454)
478 TIGR03015 pepcterm_ATPase puta 98.4 3.4E-07 7.3E-12 82.2 5.9 87 99-191 43-133 (269)
479 cd03112 CobW_like The function 98.4 5.2E-06 1.1E-10 68.9 12.3 34 101-136 2-35 (158)
480 cd01123 Rad51_DMC1_radA Rad51_ 98.4 2.4E-06 5.3E-11 75.1 10.6 120 96-219 16-168 (235)
481 PLN03210 Resistant to P. syrin 98.4 1.8E-06 3.8E-11 92.7 11.5 98 30-134 132-243 (1153)
482 COG1703 ArgK Putative periplas 98.4 2.5E-05 5.5E-10 70.3 16.9 100 97-196 49-158 (323)
483 PF13401 AAA_22: AAA domain; P 98.4 2.5E-07 5.4E-12 73.6 3.7 106 98-209 3-114 (131)
484 PRK09361 radB DNA repair and r 98.4 4.4E-06 9.5E-11 73.2 11.9 121 96-219 20-160 (225)
485 PF02881 SRP54_N: SRP54-type p 98.4 1.1E-06 2.4E-11 63.5 6.7 72 9-81 1-75 (75)
486 PF03308 ArgK: ArgK protein; 98.4 2E-06 4.4E-11 76.1 9.4 139 98-256 28-179 (266)
487 TIGR02524 dot_icm_DotB Dot/Icm 98.4 9.8E-07 2.1E-11 82.7 7.8 91 97-195 132-226 (358)
488 TIGR03881 KaiC_arch_4 KaiC dom 98.4 4.8E-06 1E-10 73.1 11.8 125 95-220 16-165 (229)
489 TIGR00235 udk uridine kinase. 98.4 4.1E-07 8.8E-12 78.9 4.7 40 97-138 4-43 (207)
490 cd01393 recA_like RecA is a b 98.4 4.8E-06 1.1E-10 72.8 11.4 126 96-221 16-169 (226)
491 TIGR02237 recomb_radB DNA repa 98.4 4.5E-06 9.7E-11 72.2 11.0 121 96-219 9-148 (209)
492 PHA02518 ParA-like protein; Pr 98.3 8.2E-06 1.8E-10 70.4 12.4 85 101-192 2-87 (211)
493 cd01136 ATPase_flagellum-secre 98.3 2.5E-06 5.5E-11 78.7 9.6 50 88-138 59-108 (326)
494 PRK11823 DNA repair protein Ra 98.3 4.1E-06 8.8E-11 80.9 11.2 116 96-219 77-206 (446)
495 COG0178 UvrA Excinuclease ATPa 98.3 5.3E-07 1.2E-11 90.1 5.0 53 174-227 833-891 (935)
496 PRK13768 GTPase; Provisional 98.3 6.3E-06 1.4E-10 73.8 11.0 39 100-138 3-41 (253)
497 KOG0065|consensus 98.3 4E-07 8.7E-12 95.2 3.6 132 87-218 129-318 (1391)
498 PRK06002 fliI flagellum-specif 98.3 3.2E-06 7E-11 80.9 9.3 50 88-138 155-204 (450)
499 cd02025 PanK Pantothenate kina 98.3 7.9E-07 1.7E-11 77.9 4.5 38 101-138 1-40 (220)
500 PRK04220 2-phosphoglycerate ki 98.3 3E-06 6.5E-11 77.1 8.1 99 37-139 22-128 (301)
No 1
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.4e-57 Score=406.69 Aligned_cols=299 Identities=51% Similarity=0.765 Sum_probs=274.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhh----hcC---cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHH-HhcCCCCCHHHH
Q psy2881 2 KINWITRLKESLSKTACNLKSLI----VNK---KIDKNLYNELESDLLKADVGFETTQFLLNELKKI-IYSKKLFNTEQV 73 (302)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 73 (302)
|.+||++++.+++++++.+.+.+ ... +++++.+++|++.|+++||+.+++.+|++.++++ ...++..+.+.+
T Consensus 30 ~~~~~~~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~~~~~v 109 (340)
T COG0552 30 KEGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKIKDEETV 109 (340)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 46899999999999976666533 322 4889999999999999999999999999999995 666666789999
Q ss_pred HHHHHHHHHHHhhccCC-Cccee---cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHh
Q psy2881 74 RNVLHNLLVNLLKSLEK-PLIFK---KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL 149 (302)
Q Consensus 74 ~~~l~~~l~~~l~~~l~-~i~l~---~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~ 149 (302)
++.+++.+.+.+.+.-+ +.... -+++.++.++|.||+||||++.+||.+++..+.+|.+...|+||.++++|++.|
T Consensus 110 ~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w 189 (340)
T COG0552 110 KEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVW 189 (340)
T ss_pred HHHHHHHHHHHhcccccccchhhhccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHH
Confidence 99999999999986433 11111 235889999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCC
Q psy2881 150 GKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNT 229 (302)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~ 229 (302)
+++.|++++....+.|++.++++++..|.+++.|+||+||+||.+++.++|++|+++.+..++...-.||++.+++++++
T Consensus 190 ~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 190 GERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred HHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 99999999997688999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred ChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 230 GQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 230 g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
|++.+.|++.|++..+++|+|+||+|+++++|.++++++++++||.|+|.||.++||++|++++|++.||+
T Consensus 270 Gqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 270 GQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred ChhHHHHHHHHHHhcCCceEEEEecccCCCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=7.3e-52 Score=379.68 Aligned_cols=300 Identities=51% Similarity=0.802 Sum_probs=272.1
Q ss_pred cchHHHHHHHHHHHHH----HHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy2881 2 KINWITRLKESLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVL 77 (302)
Q Consensus 2 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 77 (302)
||+||+++++++++++ +++.++|+++.++++.+++|++.|+++||+++++++|++.+++....++..+.+.+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~l 92 (318)
T PRK10416 13 KEGWFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELL 92 (318)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 5899999999999996 566788877789999999999999999999999999999999988776667888999999
Q ss_pred HHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe
Q psy2881 78 HNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157 (302)
Q Consensus 78 ~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~ 157 (302)
++.+.+.+.+.-.++.+.-.+|++++|+|||||||||++++||+++.+.+++|.+.+.|++|.++.+|+..|+.+.++++
T Consensus 93 ~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~ 172 (318)
T PRK10416 93 KEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV 172 (318)
T ss_pred HHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceE
Confidence 99999998754344444446789999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH
Q psy2881 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI 237 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~ 237 (302)
+......++...+++++..+...++|+||+|+||+.+....+|++|+++.+.........+|+.++|++++.|++.+.++
T Consensus 173 ~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a 252 (318)
T PRK10416 173 IAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252 (318)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH
Confidence 88777777777777888888889999999999999999999999999998765554456789999999999999999999
Q ss_pred HHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 238 ~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~ 301 (302)
..|.+..+++++|+||+|+++++|.+++++..+++||.|+|+||+++||++|+|++|+++|+|.
T Consensus 253 ~~f~~~~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~~ 316 (318)
T PRK10416 253 KAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG 316 (318)
T ss_pred HHHHhhCCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhCC
Confidence 9999889999999999999999999999999999999999999999999999999999999985
No 3
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.2e-48 Score=355.89 Aligned_cols=287 Identities=38% Similarity=0.565 Sum_probs=262.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCC----CCCHHHHHHH
Q psy2881 5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKK----LFNTEQVRNV 76 (302)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (302)
||+.|.++++++.+++ .+...++| +.+++++.+|+++||+..+++.+++.++++..+++ +.+.+.+..+
T Consensus 1 m~e~L~~~l~~~l~kl---~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKi 77 (451)
T COG0541 1 MFESLSDRLSNALKKL---RGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKI 77 (451)
T ss_pred ChHHHHHHHHHHHHHh---hCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 5777788777664433 34557776 56789999999999999999999999999988776 3466889999
Q ss_pred HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881 77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156 (302)
Q Consensus 77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~ 156 (302)
+.++|.+.+..--..+++...++.++.++|-.||||||++.+||.+++..+.+|.+..+|+||++|++||+.+++..+++
T Consensus 78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 99999999986444566666688999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~ 236 (302)
++......+|...+..++.+|.....|++|+||+|+.+.++.+|++++++.+. +.||++.+|+|+..|++++.+
T Consensus 158 ~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~------~~P~E~llVvDam~GQdA~~~ 231 (451)
T COG0541 158 FFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEV------INPDETLLVVDAMIGQDAVNT 231 (451)
T ss_pred eecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhh------cCCCeEEEEEecccchHHHHH
Confidence 99987778899899999999999999999999999999999999999999875 579999999999999999999
Q ss_pred HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
++.|++.++++|+|+||+|+++++|.++++.+.+|.||.|+|+||+++||++|+|++|+++|||
T Consensus 232 A~aF~e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG 295 (451)
T COG0541 232 AKAFNEALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG 295 (451)
T ss_pred HHHHhhhcCCceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 4
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=5.8e-45 Score=335.07 Aligned_cols=290 Identities=41% Similarity=0.595 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCc---------------------------------CC----hHHHHHHHHHHHHCCCC
Q psy2881 5 WITRLKESLSKTACNLKSLIVNKK---------------------------------ID----KNLYNELESDLLKADVG 47 (302)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~----~~~~~~l~~~L~~~~~~ 47 (302)
||++||+.++++.+++......+. ++ ++.+++|+..|+++||+
T Consensus 1 ~f~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Ll~~dv~ 80 (336)
T PRK14974 1 MFDKLKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELELELLESDVA 80 (336)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccCHHHHHHhcccCHHHHHHHHHHHHHHHHHCCCC
Confidence 688999999988777665442221 33 35788999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHHHhhccCCCcce-----ecCCCeEEEEEcCCCCCHHHHHHH
Q psy2881 48 FETTQFLLNELKKIIYSKKLFN----TEQVRNVLHNLLVNLLKSLEKPLIF-----KKCKPFVIMIVGVNGVGKTTTIGK 118 (302)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~l~~i~l-----~~~~g~ii~lvGpnGsGKTTll~~ 118 (302)
++++++|++.+++.+.+++... .+.+++.+++.|.+.+.+.- .+++ .-.++.+++++|||||||||++++
T Consensus 81 ~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 81 LEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGD-LFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCc-chhhhhhhhccCCCeEEEEEcCCCCCHHHHHHH
Confidence 9999999999999987655422 34467777777777765321 1222 123478999999999999999999
Q ss_pred HHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHH
Q psy2881 119 LANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSH 198 (302)
Q Consensus 119 Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~ 198 (302)
||..+...+.+|.+.+.|++|.++.+|++.|++..+++++....+.++...+++++..+...+.|+||+||||+.+....
T Consensus 160 LA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~ 239 (336)
T PRK14974 160 LAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDAN 239 (336)
T ss_pred HHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHH
Confidence 99999888889999999999999999999999999999988777778877778888777788999999999999999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEe
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIG 278 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~ 278 (302)
++++|+++.+. ..+|..++|++++.|++.+.+++.|+...+++++|+||+|++.++|.++++++..++||.|+|
T Consensus 240 lm~eL~~i~~~------~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ls~~~~~~~Pi~~i~ 313 (336)
T PRK14974 240 LMDELKKIVRV------TKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLG 313 (336)
T ss_pred HHHHHHHHHHh------hCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccHHHHHHHHHCcCEEEEe
Confidence 99999998764 347888999999999999999999998899999999999999999999999999999999999
Q ss_pred cCCCCCcCccCChHHHHHHhccC
Q psy2881 279 IGEKIEDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 279 ~gq~v~dl~~~~~~~~~~~l~~~ 301 (302)
+||+|+||++|+|++|+++|||.
T Consensus 314 ~Gq~v~Dl~~~~~~~~v~~llg~ 336 (336)
T PRK14974 314 VGQGYDDLIPFDPDWFVDKLLGE 336 (336)
T ss_pred CCCChhhcccCCHHHHHHHHhCC
Confidence 99999999999999999999983
No 5
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=1.5e-44 Score=339.97 Aligned_cols=286 Identities=33% Similarity=0.519 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCChH----HHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHHH
Q psy2881 6 ITRLKESLSKTACNLKSLIVNKKIDKN----LYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNVL 77 (302)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l 77 (302)
|+.|.+++... ++++.+...++++ .+++++..|+++||+..++++|++.+++...+++. .+.+.+...+
T Consensus 2 l~~L~~~l~~~---~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v 78 (429)
T TIGR01425 2 LADLGSSITSA---LRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAV 78 (429)
T ss_pred hhHHHHHHHHH---HHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHH
Confidence 56666666654 3344445578874 68999999999999999999999999998765552 2346788999
Q ss_pred HHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe
Q psy2881 78 HNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157 (302)
Q Consensus 78 ~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~ 157 (302)
.+.|.+.+.+....+++.-.++.+++++||+||||||++.+||.++...+.+|.+.++|++|.++++|++.|++..++|+
T Consensus 79 ~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~ 158 (429)
T TIGR01425 79 FKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPF 158 (429)
T ss_pred HHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeE
Confidence 99999988765555555555678999999999999999999999998777799999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH
Q psy2881 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI 237 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~ 237 (302)
+......++...+.+++.++...++|+||+||||+.+....++++|.++.+. ..+++.++|++++.|++++.++
T Consensus 159 ~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~------~~p~e~lLVlda~~Gq~a~~~a 232 (429)
T TIGR01425 159 YGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEA------IQPDNIIFVMDGSIGQAAEAQA 232 (429)
T ss_pred EeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhh------cCCcEEEEEeccccChhHHHHH
Confidence 8766666777777777877777789999999999999999999999998754 3578999999999999999999
Q ss_pred HHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 238 ~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
+.|++..+++++|+||+|+++++|.++++...+++||.|+|+||+++||++|+|++++++|+|
T Consensus 233 ~~F~~~~~~~g~IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilg 295 (429)
T TIGR01425 233 KAFKDSVDVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLG 295 (429)
T ss_pred HHHHhccCCcEEEEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhc
Confidence 999988999999999999999999999999999999999999999999999999999999998
No 6
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=334.03 Aligned_cols=287 Identities=38% Similarity=0.573 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHH
Q psy2881 5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNV 76 (302)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 76 (302)
||++|.++++++.+++. ....+++ +.+++++..|+++||+.+++++|++.+++...+++. .+.+.+..+
T Consensus 1 mf~~l~~~l~~~~~~l~---~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 77 (433)
T PRK10867 1 MFESLSDRLSSAFKKLR---GKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKI 77 (433)
T ss_pred ChHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHH
Confidence 68888888876644444 3445665 578999999999999999999999999998766542 355778999
Q ss_pred HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCC
Q psy2881 77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDV 155 (302)
Q Consensus 77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~ 155 (302)
+.+.|.+.+.+...++++.-.++.+++++||+||||||++.+||.++... +.+|.+.++|++|.++.+|++.|++..++
T Consensus 78 v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv 157 (433)
T PRK10867 78 VNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGV 157 (433)
T ss_pred HHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCC
Confidence 99999999975445566655567999999999999999999999999877 78899999999999999999999999999
Q ss_pred CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHH
Q psy2881 156 PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLS 235 (302)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~ 235 (302)
+++......++.....+++..+...++|+||+|+||+.+.+..++++|.++.+. +.+++.++|++++.|++.+.
T Consensus 158 ~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~------v~p~evllVlda~~gq~av~ 231 (433)
T PRK10867 158 PVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAA------VNPDEILLVVDAMTGQDAVN 231 (433)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHh------hCCCeEEEEEecccHHHHHH
Confidence 988765556777777777777777889999999999888888999999998764 35788999999999999999
Q ss_pred HHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 236 QIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 236 ~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
+++.|++.++++++|+||+|+++++|.+++++..+++||.|+|+||+++||++|+|++|+++|||
T Consensus 232 ~a~~F~~~~~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilg 296 (433)
T PRK10867 232 TAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG 296 (433)
T ss_pred HHHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhC
Confidence 99999988999999999999999999999999999999999999999999999999999999998
No 7
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=2.6e-43 Score=317.17 Aligned_cols=271 Identities=51% Similarity=0.742 Sum_probs=240.1
Q ss_pred CChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCC
Q psy2881 29 IDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVN 108 (302)
Q Consensus 29 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpn 108 (302)
+.++++++|+..|+++||+++++++|++.+++.+..++..+.+.+++.+++.+.+.+.+.-..+++...++.+++++||+
T Consensus 2 ~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~ 81 (272)
T TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVN 81 (272)
T ss_pred ccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCC
Confidence 45688999999999999999999999999999887777677788899999999888865423344445678999999999
Q ss_pred CCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEc
Q psy2881 109 GVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVD 188 (302)
Q Consensus 109 GsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllD 188 (302)
|+||||++.+||..+...+.+|.+.+.|++|.++.+|+..|++..+++++......++....++.+..+...++|++|+|
T Consensus 82 G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViID 161 (272)
T TIGR00064 82 GVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLID 161 (272)
T ss_pred CCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999988888999999999999999999999999999988766666777666677777777899999999
Q ss_pred CCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhh
Q psy2881 189 TSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAK 268 (302)
Q Consensus 189 EP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~ 268 (302)
+||+.+.+..++++|+++.+.........+|+.++|++++.+.+.+.++..|.+..+++++|+||+|++.++|.++++..
T Consensus 162 T~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 162 TAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAY 241 (272)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHHHHHH
Confidence 99988889999999999987543333345889999999999999999999999888999999999999999999999999
Q ss_pred HhCCceEEEecCCCCCcCccCChHHHHHHhc
Q psy2881 269 KYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299 (302)
Q Consensus 269 ~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~ 299 (302)
.+++|+.|+|+||+++||++|+|++|+++||
T Consensus 242 ~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 242 ELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred HHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 9999999999999999999999999999986
No 8
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=1.8e-41 Score=321.55 Aligned_cols=274 Identities=39% Similarity=0.591 Sum_probs=236.8
Q ss_pred HHHHHhhhcCcCChH----HHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHhhccC
Q psy2881 18 CNLKSLIVNKKIDKN----LYNELESDLLKADVGFETTQFLLNELKKIIYSKK----LFNTEQVRNVLHNLLVNLLKSLE 89 (302)
Q Consensus 18 ~~~~~~~~~~~~~~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~l~~~l 89 (302)
+.+++++++..++++ .+++++..|+++||++++++++++.+++...+++ ..+.+.+.+.+.+.|.+.+...-
T Consensus 7 ~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~~~ 86 (437)
T PRK00771 7 DALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLGEET 86 (437)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCCCc
Confidence 345556666688886 7889999999999999999999999998876654 34557778889999988886543
Q ss_pred CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHH
Q psy2881 90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAI 169 (302)
Q Consensus 90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~ 169 (302)
..+++. .++.+++++|++||||||++++||..+...+.+|.+.++|++|.++.+|++.|++..++|++......++...
T Consensus 87 ~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i 165 (437)
T PRK00771 87 EPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEI 165 (437)
T ss_pred cccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHH
Confidence 333343 4678999999999999999999999998777899999999999999999999999999998876555566666
Q ss_pred HHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeE
Q psy2881 170 AFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGL 249 (302)
Q Consensus 170 ~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~ 249 (302)
+.+++.++ .+.++||+||||+.+....++++|..+... ..++++++|++++.|++.+.+++.|++.++++++
T Consensus 166 ~~~al~~~--~~~DvVIIDTAGr~~~d~~lm~El~~l~~~------~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gv 237 (437)
T PRK00771 166 AKEGLEKF--KKADVIIVDTAGRHALEEDLIEEMKEIKEA------VKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237 (437)
T ss_pred HHHHHHHh--hcCCEEEEECCCcccchHHHHHHHHHHHHH------hcccceeEEEeccccHHHHHHHHHHHhcCCCCEE
Confidence 66666554 345999999999989999999999998754 3588999999999999999999999988999999
Q ss_pred EEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 250 IITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 250 i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
|+||+|+++++|.+++++..+++||.|+|+||+|+||++|+|++|+++|||
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg 288 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG 288 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998
No 9
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=6.2e-41 Score=317.17 Aligned_cols=286 Identities=38% Similarity=0.589 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCC----CCCHHHHHHHH
Q psy2881 6 ITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKK----LFNTEQVRNVL 77 (302)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l 77 (302)
|+.|.+++++..+++ .+...+++ +.+++++..|+++||+.+++++|++.+++...+++ ..+.+.+...+
T Consensus 1 ~~~L~~~~~~~~~~l---~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v 77 (428)
T TIGR00959 1 FESLSERLQRIFKKL---SGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIV 77 (428)
T ss_pred CchHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHH
Confidence 345566665543333 34456776 57899999999999999999999999998876544 24567788999
Q ss_pred HHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881 78 HNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156 (302)
Q Consensus 78 ~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~ 156 (302)
.+.|.+.+.+.-..+++.-.++.++.++||+||||||++.+||..+. ..+.+|.+.++|++|.++.+|+..|++..+++
T Consensus 78 ~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 78 HEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred HHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 99999988764334555445578999999999999999999999876 46779999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~ 236 (302)
++......++.....+++..+...++|+||+|+||+.+.+..++.++.++.+. +.+++.++|++++++++.+.+
T Consensus 158 ~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~------~~p~e~lLVvda~tgq~~~~~ 231 (428)
T TIGR00959 158 VFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEI------LNPDEILLVVDAMTGQDAVNT 231 (428)
T ss_pred eEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHh------hCCceEEEEEeccchHHHHHH
Confidence 88876666777676777777777889999999999888888899999998764 357899999999999999999
Q ss_pred HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
++.|...++++++|+||+|++.++|.+++++..+++||.|+++||+++||++|+|++|+++|||
T Consensus 232 a~~f~~~v~i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg 295 (428)
T TIGR00959 232 AKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILG 295 (428)
T ss_pred HHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhC
Confidence 9999988999999999999999999999999999999999999999999999999999999998
No 10
>KOG0780|consensus
Probab=100.00 E-value=1.2e-41 Score=307.35 Aligned_cols=263 Identities=37% Similarity=0.553 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcC
Q psy2881 32 NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLF----NTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGV 107 (302)
Q Consensus 32 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGp 107 (302)
..+.+|..+|+++||++.++.++.+++++.+..++.. ....+..++.++|.+.+.+-...+.+...++.++.++|.
T Consensus 30 ~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGL 109 (483)
T KOG0780|consen 30 TMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGL 109 (483)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEec
Confidence 4789999999999999999999999999998776643 345677888999999998866666677778899999999
Q ss_pred CCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q psy2881 108 NGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIV 187 (302)
Q Consensus 108 nGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llll 187 (302)
+|+||||++.++|.+|+..+-++.+...|+||.+|.+|++.++...++|++..+...++..++.+.+.+..-.+.|+||+
T Consensus 110 qG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIv 189 (483)
T KOG0780|consen 110 QGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIV 189 (483)
T ss_pred cCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999989899999999999999
Q ss_pred cCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhh
Q psy2881 188 DTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIA 267 (302)
Q Consensus 188 DEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~ 267 (302)
||.|+.+....+++++.++.+. +.|.++.+|+|++.|+++..|++.|.+..++.++|+||+|+.+++|.++++.
T Consensus 190 DTSGRh~qe~sLfeEM~~v~~a------i~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaV 263 (483)
T KOG0780|consen 190 DTSGRHKQEASLFEEMKQVSKA------IKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAV 263 (483)
T ss_pred eCCCchhhhHHHHHHHHHHHhh------cCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCCceeeeh
Confidence 9999999999999999999875 4588999999999999999999999999999999999999999999999999
Q ss_pred hHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 268 KKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 268 ~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
..++.||.|||+||+++||++|+|+.|+++|||
T Consensus 264 aaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLG 296 (483)
T KOG0780|consen 264 AATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLG 296 (483)
T ss_pred hhhCCCEEEEecCccccccCCCChHHHHHHHhc
Confidence 999999999999999999999999999999998
No 11
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1e-40 Score=330.87 Aligned_cols=276 Identities=26% Similarity=0.323 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHHH----HHhhh--cC-cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy2881 6 ITRLKESLSKTACNL----KSLIV--NK-KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLH 78 (302)
Q Consensus 6 ~~~~~~~~~~~~~~~----~~~~~--~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 78 (302)
++.+++++.++++.+ ..+++ +. ..+++..+++++.|+++||+++++++|++.+.+. .+.+.+++++.
T Consensus 92 ~~~l~~El~~lk~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~------~~~~~~~~~l~ 165 (767)
T PRK14723 92 IGDLRGELQSMRGMLERQLAGLLWAAGEVAGRDPLRASLFRWLLGAGFSGQLARALLERLPVG------YDRPAAMAWIR 165 (767)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc------CCHHHHHHHHH
Confidence 466777777775443 33432 12 4567788999999999999999999999988643 35567889999
Q ss_pred HHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC--eEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881 79 NLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK--SVLLAACDTFRAAAYEQLLILGKYNDVP 156 (302)
Q Consensus 79 ~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g--~V~l~~~d~~~~~~~~ql~~~~~~~~~~ 156 (302)
+.|.+.++ ++++.++.+.+|++++|+||||||||||+.+|++.+....| +|.+.+.|++|+++.+|++.|++..+++
T Consensus 166 ~~L~~~l~-il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp 244 (767)
T PRK14723 166 NELATHLP-VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVP 244 (767)
T ss_pred HHHHHHhh-hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC
Confidence 99998885 66777887878999999999999999999999999875543 8999999999999999999999999998
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~ 236 (302)
++... ++.. ..+++.. ..+.|+||+||||+++.+..+++++..+.+. ..+|+.++|++++.+.+.+.+
T Consensus 245 v~~~~---~~~~-l~~al~~--~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~------~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 245 VHAVK---DAAD-LRFALAA--LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred ccccC---CHHH-HHHHHHH--hcCCCEEEEeCCCCCccCHHHHHHHHHHhcc------CCCCeEEEEECCCCcHHHHHH
Confidence 86543 3332 4455543 4578999999999988888899999887642 358899999999998877776
Q ss_pred H-HHHHhh--cCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881 237 I-KEFSKI--LRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN 300 (302)
Q Consensus 237 ~-~~f~~~--~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~ 300 (302)
. +.|+.. .+++++|+||+||+.++|.+++++..+++||+|+|+||+| +||++|+|+.|+++|++
T Consensus 313 i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred HHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhc
Confidence 4 788654 3799999999999999999999999999999999999999 99999999999999997
No 12
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=2.6e-40 Score=315.55 Aligned_cols=276 Identities=24% Similarity=0.319 Sum_probs=228.2
Q ss_pred HHHHHHHHHHHH----HHHHHhhhcC-cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy2881 6 ITRLKESLSKTA----CNLKSLIVNK-KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNL 80 (302)
Q Consensus 6 ~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (302)
.+.+++++.+++ +++.+++|+. ..+++.+++|++.|+++||+++++++|++.+.+.. +.+.+++++++.
T Consensus 165 ~~~l~~El~~lr~~l~~~~~~l~~~~~~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~------~~~~~~~~l~~~ 238 (484)
T PRK06995 165 NDTVMQELRSLRGMLEEQLASLAWGERQRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGD------DAEAALDWVQSA 238 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhh------chhHHHHHHHHH
Confidence 456677777765 4455666644 56778899999999999999999999999987653 345678888888
Q ss_pred HHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC--eEEEecccCCChhHHHHHHHhcccCCCCee
Q psy2881 81 LVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK--SVLLAACDTFRAAAYEQLLILGKYNDVPVI 158 (302)
Q Consensus 81 l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g--~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~ 158 (302)
+.+.+. ++++.++.+.+|.+++|+||||||||||+++||+.+....| +|.+...|++|.++.+|+++|++..++++.
T Consensus 239 l~~~l~-~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~ 317 (484)
T PRK06995 239 LAKNLP-VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH 317 (484)
T ss_pred HHHHHh-hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee
Confidence 888875 45666777778999999999999999999999999976543 799999999999999999999999999877
Q ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHH
Q psy2881 159 SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIK 238 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~ 238 (302)
......+.. ++..-+.+.+++++|++|+.+....+++.+..+.+. ..+++..+|++++.+...+.+..
T Consensus 318 ~~~~~~Dl~------~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~------~~p~e~~LVLdAt~~~~~l~~i~ 385 (484)
T PRK06995 318 AVKDAADLR------LALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGA------GAPVKRLLLLNATSHGDTLNEVV 385 (484)
T ss_pred ccCCchhHH------HHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhcc------CCCCeeEEEEeCCCcHHHHHHHH
Confidence 654433322 233456788999999999877776666666655422 23677899999999998888876
Q ss_pred HHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881 239 EFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN 300 (302)
Q Consensus 239 ~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~ 300 (302)
.++...+++++|+||+|++.++|.+++++..+++||+|+|+||+| +||++|+++.|++++++
T Consensus 386 ~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 386 QAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred HHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhc
Confidence 666678899999999999999999999999999999999999999 99999999999999997
No 13
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=4.1e-39 Score=296.32 Aligned_cols=280 Identities=21% Similarity=0.261 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy2881 5 WITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNL 84 (302)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 84 (302)
-|+.++..+.++.++++...|..+. ...++++.|.+.||+++++.+|++.+.+.+......+.+.+++++.+.|...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~ 194 (407)
T PRK12726 118 ELSAMRLELAALNRELAVKMREERE---QNSDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGK 194 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc---ccHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCc
Confidence 3566777777777777643343221 1337899999999999999999999988865555456788888888888887
Q ss_pred hhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCC
Q psy2881 85 LKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKIT 164 (302)
Q Consensus 85 l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~ 164 (302)
+.. .. ++.+.+|++++|+||+||||||++.+||..+...+.+|.+.+.|++|.++.+||+.|++..+++++...
T Consensus 195 l~~-~~--~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~--- 268 (407)
T PRK12726 195 LAV-ED--SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVAT--- 268 (407)
T ss_pred Eee-CC--CceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecC---
Confidence 743 22 455678999999999999999999999998877788999999999999999999999999999887542
Q ss_pred CHHHHHHHHHHHHH-hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HHHHh
Q psy2881 165 DPAAIAFNAINIAQ-KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KEFSK 242 (302)
Q Consensus 165 ~~~~~~~~~la~al-~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~f~~ 242 (302)
++.. ..+++..+. ..+.|+||+|+||+.+.....+++|.++.+. ..+|...+|++++.+...+.+. +.| .
T Consensus 269 dp~d-L~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~------~~p~~~~LVLsag~~~~d~~~i~~~f-~ 340 (407)
T PRK12726 269 SPAE-LEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDV------VHPDLTCFTFSSGMKSADVMTILPKL-A 340 (407)
T ss_pred CHHH-HHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhc------cCCceEEEECCCcccHHHHHHHHHhc-C
Confidence 3332 344454432 3678999999999888888899999888654 3567778999998877555554 455 5
Q ss_pred hcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhccC
Q psy2881 243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 243 ~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~~ 301 (302)
.++++++|+||+||++++|.+++++..+++||+|+|+||+| +|+..+++++++++++|.
T Consensus 341 ~l~i~glI~TKLDET~~~G~~Lsv~~~tglPIsylt~GQ~VpdDi~~a~~~~Lv~~ll~~ 400 (407)
T PRK12726 341 EIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGT 400 (407)
T ss_pred cCCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCCCcccCCCCHHHHHHHHhcc
Confidence 78999999999999999999999999999999999999999 899999999999999985
No 14
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=9.2e-39 Score=298.93 Aligned_cols=279 Identities=22% Similarity=0.294 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy2881 6 ITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLL 85 (302)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 85 (302)
++.+.+.+..+++-+.... ..++++.++++++.|+++||+++++.+|++.+++.....+..+.+.+++.+.+.+.+.+
T Consensus 85 ~~~l~~el~~lk~~l~~~~--~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~~~i 162 (388)
T PRK12723 85 IEDVLKEVKSLKNELAHKK--EEINHPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTI 162 (388)
T ss_pred HHHHHHHHHHHHHHHHhhc--cccCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHh
Confidence 3445555555543333222 23456889999999999999999999999999888765555677888888888888777
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK----RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK 161 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~ 161 (302)
... .+. .....+.+++++||||+||||++++||..+.. .+.+|.+.+.|++|.++.+|++.|++.+++|+....
T Consensus 163 ~~~-~~~-~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~ 240 (388)
T PRK12723 163 KCS-GSI-IDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE 240 (388)
T ss_pred hcc-Ccc-ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC
Confidence 422 111 11235679999999999999999999998873 367999999999999999999999999999986553
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HHH
Q psy2881 162 KITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KEF 240 (302)
Q Consensus 162 ~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~f 240 (302)
. . ......+++ ..++++||+||||+.+.....+.++.++.+..+ ..++.++|++++++.+++.+. ..|
T Consensus 241 ~---~-~~l~~~L~~--~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~-----~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 241 S---F-KDLKEEITQ--SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG-----RDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred c---H-HHHHHHHHH--hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC-----CCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 2 2 122333433 478999999999977765545666666654321 356899999999999777654 444
Q ss_pred HhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881 241 SKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN 300 (302)
Q Consensus 241 ~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~ 300 (302)
..++++++|+||+|||+++|.+++++..+++|++|+|+||+| +||++|+|+.|++.|+|
T Consensus 310 -~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g 369 (388)
T PRK12723 310 -SPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKING 369 (388)
T ss_pred -cCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcC
Confidence 367899999999999999999999999999999999999999 99999999999999998
No 15
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=5.9e-40 Score=281.98 Aligned_cols=196 Identities=38% Similarity=0.579 Sum_probs=178.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ 178 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al 178 (302)
|.+++++||+||||||++.+||..+...+.+|.+...|++|.++.+|++.|++.+++|++......++.....+++...-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 47899999999999999999999999779999999999999999999999999999999988777778777777777766
Q ss_pred hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCC
Q psy2881 179 KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTT 258 (302)
Q Consensus 179 ~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~ 258 (302)
..+.|+||+|+||+.+.....+++|+++.+.. .+++.++|++++.+++.+.+...|++.++++++|+||+||+.
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~------~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEAL------NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETA 154 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH------SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSS
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhc------CCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCC
Confidence 77899999999999999999999999987652 578999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 259 KGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 259 ~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
++|.+++++...++|++|+|+||+|+||++|+|++|+++|||
T Consensus 155 ~~G~~l~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 155 RLGALLSLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp TTHHHHHHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred CcccceeHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 999999999999999999999999999999999999999997
No 16
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=3.5e-38 Score=290.92 Aligned_cols=255 Identities=24% Similarity=0.321 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCC
Q psy2881 32 NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVG 111 (302)
Q Consensus 32 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsG 111 (302)
..+..++..|.++||+++++.++++.+.......+..+.+.+++.+.+.+...+... . .+ ..++.+++|+||||||
T Consensus 178 ~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~-~~-~~~~~vI~LVGptGvG 253 (436)
T PRK11889 178 FIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTE--N-VF-EKEVQTIALIGPTGVG 253 (436)
T ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHhccc--c-cc-ccCCcEEEEECCCCCc
Confidence 456789999999999999999999999876555444567788888888887777532 1 12 2346799999999999
Q ss_pred HHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHh-CCCCeEEEcCC
Q psy2881 112 KTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQK-KNTDIVIVDTS 190 (302)
Q Consensus 112 KTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~-~~~~llllDEP 190 (302)
|||++.+||+.+...+.+|.+.+.|++|.++.+|++.|++..+++++... ++... .+++..+-. .+.|+||+|+|
T Consensus 254 KTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~---d~~~L-~~aL~~lk~~~~~DvVLIDTa 329 (436)
T PRK11889 254 KTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAM-TRALTYFKEEARVDYILIDTA 329 (436)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC---CHHHH-HHHHHHHHhccCCCEEEEeCc
Confidence 99999999999887777999999999999999999999999999988653 33322 244443322 36899999999
Q ss_pred CCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhH-HHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhH
Q psy2881 191 GRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNT-LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK 269 (302)
Q Consensus 191 ~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~-~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~ 269 (302)
|+.+.....++++.++.+. ..+|+.++|++++.+.++ ..+.+.|+. ++++++|+||+||++++|.+++++..
T Consensus 330 GRs~kd~~lm~EL~~~lk~------~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~G~iLni~~~ 402 (436)
T PRK11889 330 GKNYRASETVEEMIETMGQ------VEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAV 402 (436)
T ss_pred cccCcCHHHHHHHHHHHhh------cCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHHHH
Confidence 9888888888888877653 347889999999988744 556788874 89999999999999999999999999
Q ss_pred hCCceEEEecCCCC-CcCccCChHHHHHHhccC
Q psy2881 270 YSIPLYFIGIGEKI-EDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 270 ~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~~ 301 (302)
+++||+|+|+||+| +||+.+++++++++++|.
T Consensus 403 ~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg~ 435 (436)
T PRK11889 403 SSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 435 (436)
T ss_pred HCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 99999999999999 999999999999999985
No 17
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=3.2e-37 Score=286.40 Aligned_cols=277 Identities=22% Similarity=0.321 Sum_probs=221.4
Q ss_pred HHHHHHHHHHH----HHHHhhhcC-cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy2881 8 RLKESLSKTAC----NLKSLIVNK-KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLV 82 (302)
Q Consensus 8 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 82 (302)
.+++++..+++ ++..+.|.. ...++....+.+.|.+.||++.+++++++.+.... +..+.+..+.++.+.+.
T Consensus 45 ~~~~El~~lr~ll~~~~~~~~w~~~~~~~p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~ 121 (374)
T PRK14722 45 TVMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGE---GYDTLDAAADWAQSVLA 121 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhccCcHHHHHHHHHHHCCCCHHHHHHHHHhhhhhc---ccCCHHHHHHHHHHHHH
Confidence 44444444432 333444433 22345568999999999999999999999886532 12355667888888887
Q ss_pred HHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-C-CeEEEecccCCChhHHHHHHHhcccCCCCeeec
Q psy2881 83 NLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-K-KSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160 (302)
Q Consensus 83 ~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~-g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~ 160 (302)
+.+. ++++.++.+.+|++++|+||||||||||+++|++.+... + .+|.+...|.+|.++.+|++.|++.+++++...
T Consensus 122 ~~l~-~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~ 200 (374)
T PRK14722 122 ANLP-VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV 200 (374)
T ss_pred hcch-hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEec
Confidence 7774 556677778899999999999999999999999987644 3 489999999999999999999999999998877
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HH
Q psy2881 161 KKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KE 239 (302)
Q Consensus 161 ~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~ 239 (302)
....+... .+ .-..++++||+||||..+.+..+++++..+... ..+.+.++|++++.+.+.+.+. ..
T Consensus 201 ~~~~~l~~----~l--~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~------~~~~~~lLVLsAts~~~~l~evi~~ 268 (374)
T PRK14722 201 KDGGDLQL----AL--AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGA------DTPVQRLLLLNATSHGDTLNEVVQA 268 (374)
T ss_pred CCcccHHH----HH--HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhcc------CCCCeEEEEecCccChHHHHHHHHH
Confidence 65555432 22 235788999999999888777888888877432 2356789999999999887764 78
Q ss_pred HHhhc--------CCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881 240 FSKIL--------RITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN 300 (302)
Q Consensus 240 f~~~~--------~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~ 300 (302)
|.... +++++|+||+||+.++|.+++++..+++|+.|+|+||+| |||++++++.+++++++
T Consensus 269 f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~ 338 (374)
T PRK14722 269 YRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFC 338 (374)
T ss_pred HHHhhcccccccCCCCEEEEeccccCCCccHHHHHHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhc
Confidence 87653 589999999999999999999999999999999999999 99999999999999986
No 18
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=5.7e-37 Score=288.66 Aligned_cols=250 Identities=26% Similarity=0.286 Sum_probs=205.6
Q ss_pred hHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCC
Q psy2881 31 KNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGV 110 (302)
Q Consensus 31 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGs 110 (302)
++....+.+.|+++||+++++++|++.+..... .+..++++++.+.+.+...... . .+.+|++++|+|||||
T Consensus 131 ~p~~~~~~~~L~~~~v~~~la~~l~~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~-~-~~~~g~vi~lvGpnG~ 202 (420)
T PRK14721 131 DPGGMKVLRTLLSAGFSPLLSRHLLEKLPADRD------FEQSLKKTISLLTLNLRTIGGD-E-IIEQGGVYALIGPTGV 202 (420)
T ss_pred CcHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHhcCCc-c-ccCCCcEEEEECCCCC
Confidence 345588999999999999999999998876542 2334566777776666532222 1 2468999999999999
Q ss_pred CHHHHHHHHHhHhhhC--CCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEc
Q psy2881 111 GKTTTIGKLANYFKKR--KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVD 188 (302)
Q Consensus 111 GKTTll~~Lag~~~~~--~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllD 188 (302)
|||||+++||+.+... ..++.+...|.+|.++.+|+..|++.+++++.......+.. .+.....+.+++++|
T Consensus 203 GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~------~al~~l~~~d~VLID 276 (420)
T PRK14721 203 GKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQ------LMLHELRGKHMVLID 276 (420)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHH------HHHHHhcCCCEEEec
Confidence 9999999999976422 24678888999999999999999999999987654433321 233446789999999
Q ss_pred CCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhh
Q psy2881 189 TSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAK 268 (302)
Q Consensus 189 EP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~ 268 (302)
|+|..+....+++++..+... ..+++.++|++++.+.+.+.+...++..++++++|+||+||+.++|.+++++.
T Consensus 277 TaGrsqrd~~~~~~l~~l~~~------~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~~~G~~l~~~~ 350 (420)
T PRK14721 277 TVGMSQRDQMLAEQIAMLSQC------GTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALDAVI 350 (420)
T ss_pred CCCCCcchHHHHHHHHHHhcc------CCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCCCccHHHHHHH
Confidence 999888888888888887432 24788999999999998888876666689999999999999999999999999
Q ss_pred HhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881 269 KYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN 300 (302)
Q Consensus 269 ~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~ 300 (302)
.+++|++|+|+||+| +||++|+++.|++++++
T Consensus 351 ~~~lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 351 RRKLVLHYVTNGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred HhCCCEEEEECCCCchhhhhhCCHHHHHHHHhc
Confidence 999999999999999 99999999999999997
No 19
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=2.7e-36 Score=286.83 Aligned_cols=279 Identities=27% Similarity=0.383 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC---cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy2881 5 WITRLKESLSKTACNLKSLIVNK---KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLL 81 (302)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 81 (302)
.++.+++++.++++.+....... ...++.++++++.|++.||+++++.+|++.+........ . .+++++.+.|
T Consensus 131 ~~~~l~~el~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~---~-~~~~~~~~~L 206 (424)
T PRK05703 131 ELDELRDELKELKNLLEDQLSGLRQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRE---R-TAWRYLLELL 206 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhH---H-HHHHHHHHHH
Confidence 56778888888876666555432 344678899999999999999999999999987753321 1 4788899999
Q ss_pred HHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-h-CCCeEEEecccCCChhHHHHHHHhcccCCCCeee
Q psy2881 82 VNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-K-RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS 159 (302)
Q Consensus 82 ~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~ 159 (302)
.+.+...-. .+ +.+|++++|+|||||||||++.+||+.+. . .+.+|.+.+.|++|.++.+|+..|++..++++..
T Consensus 207 ~~~l~~~~~--~~-~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~ 283 (424)
T PRK05703 207 ANMIPVRVE--DI-LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEV 283 (424)
T ss_pred HHHhCcccc--cc-ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEc
Confidence 988864322 33 56788999999999999999999999887 3 4568999999999999999999999999999876
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHH
Q psy2881 160 EKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKE 239 (302)
Q Consensus 160 ~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~ 239 (302)
.....+. ...+. ...++|+||+|+||..+.....++.|.++.+. ...++...+|++++.+..++.+...
T Consensus 284 ~~~~~~l----~~~l~--~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~-----~~~~~~~~LVl~a~~~~~~l~~~~~ 352 (424)
T PRK05703 284 VYDPKEL----AKALE--QLRDCDVILIDTAGRSQRDKRLIEELKALIEF-----SGEPIDVYLVLSATTKYEDLKDIYK 352 (424)
T ss_pred cCCHHhH----HHHHH--HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc-----cCCCCeEEEEEECCCCHHHHHHHHH
Confidence 5443222 22232 23579999999999888888888888887652 1135678899999999888888644
Q ss_pred HHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhccC
Q psy2881 240 FSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 240 f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~~ 301 (302)
....++++++|+||+|++..+|.+++++...++|++|+|+||+| +||++|+|++|+++|||.
T Consensus 353 ~f~~~~~~~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~ 415 (424)
T PRK05703 353 HFSRLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGG 415 (424)
T ss_pred HhCCCCCCEEEEecccccccccHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhcc
Confidence 44578889999999999999999999999999999999999999 999999999999999984
No 20
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=2.6e-36 Score=281.87 Aligned_cols=258 Identities=18% Similarity=0.235 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCccee-cCCCeEEEEEcCCCC
Q psy2881 32 NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFK-KCKPFVIMIVGVNGV 110 (302)
Q Consensus 32 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~-~~~g~ii~lvGpnGs 110 (302)
+.+++|++.|+++||+++++.+|++.+.+.+...+..+.+.+++.+.+.|...+......++.. ..++.+++++||+||
T Consensus 155 ~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGv 234 (432)
T PRK12724 155 SPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGS 234 (432)
T ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCC
Confidence 5678999999999999999999999999887665555667788889999988875321111111 135789999999999
Q ss_pred CHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcC
Q psy2881 111 GKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDT 189 (302)
Q Consensus 111 GKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDE 189 (302)
||||++.+||..+. ..+.+|.+.+.|++|.++.+|++.|++..++++..... . ......+...++|+||+|+
T Consensus 235 GKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~---~----~~l~~~l~~~~~D~VLIDT 307 (432)
T PRK12724 235 GKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD---I----KKFKETLARDGSELILIDT 307 (432)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH---H----HHHHHHHHhCCCCEEEEeC
Confidence 99999999998664 45678999999999999999999999999998754311 1 1222222236899999999
Q ss_pred CCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhH
Q psy2881 190 SGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK 269 (302)
Q Consensus 190 P~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~ 269 (302)
||.++.....++.|.++.+..+. ..+++.++|++++.+++.+.+...+++.++++++|+||+||++++|.+++++..
T Consensus 308 aGr~~rd~~~l~eL~~~~~~~~~---~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G~il~i~~~ 384 (432)
T PRK12724 308 AGYSHRNLEQLERMQSFYSCFGE---KDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLELADT 384 (432)
T ss_pred CCCCccCHHHHHHHHHHHHhhcC---CCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCccHHHHHHHH
Confidence 99888788888888888764321 136789999999999988877766668999999999999999999999999999
Q ss_pred hCCceEEEecCCCC-CcCccCChHHHHHHhc
Q psy2881 270 YSIPLYFIGIGEKI-EDLQIFNAVDFVNALL 299 (302)
Q Consensus 270 ~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~ 299 (302)
+++|++|+|+||+| +||++++++.|++.++
T Consensus 385 ~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~ 415 (432)
T PRK12724 385 YSKSFTYLSVGQEVPFDILNATKNLMAECVV 415 (432)
T ss_pred HCCCEEEEecCCCCCCCHHHhhHHHHHHHhc
Confidence 99999999999999 9999999999999886
No 21
>KOG0781|consensus
Probab=100.00 E-value=7e-37 Score=282.58 Aligned_cols=272 Identities=31% Similarity=0.506 Sum_probs=236.0
Q ss_pred hhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHHHhhc-----cC
Q psy2881 23 LIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTE----QVRNVLHNLLVNLLKS-----LE 89 (302)
Q Consensus 23 ~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~l~~-----~l 89 (302)
+.+++.+.+ +.++.+.++|+..+|+++.|.+||+.+...+.+++..+.. .+++++++.|.++|.| ++
T Consensus 287 lvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQILTP~~sVDlL 366 (587)
T KOG0781|consen 287 LVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQILTPQRSVDLL 366 (587)
T ss_pred hcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHcCCCchhhHH
Confidence 334466665 5789999999999999999999999999999998876655 4555666666666654 12
Q ss_pred CCcce--ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccC------CCCeeecC
Q psy2881 90 KPLIF--KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYN------DVPVISEK 161 (302)
Q Consensus 90 ~~i~l--~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~------~~~~~~~~ 161 (302)
++|.= .-+++.+++|+|.||+||||.|++||.|+...+-+|++.++|+||.+|+|||+.+.+++ .++++...
T Consensus 367 RdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekG 446 (587)
T KOG0781|consen 367 RDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKG 446 (587)
T ss_pred HHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhh
Confidence 22211 12468999999999999999999999999999999999999999999999999988876 47788888
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHH
Q psy2881 162 KITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS 241 (302)
Q Consensus 162 ~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~ 241 (302)
++.++..++.++|+.|.-++.|++|+||+|+.+++..+|..|.++.+.. -+..+.+|..+-.|.+.+.|...|+
T Consensus 447 Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~------~pd~i~~vgealvg~dsv~q~~~fn 520 (587)
T KOG0781|consen 447 YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVN------KPDLILFVGEALVGNDSVDQLKKFN 520 (587)
T ss_pred cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcC------CCceEEEehhhhhCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998753 4667788888999999999999999
Q ss_pred hhcC-------CCeEEEecCCC-CCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 242 KILR-------ITGLIITKLDG-TTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 242 ~~~~-------~~~~i~tk~d~-~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
+.+. +|++++||+|. ..+.|++++..+..+.||.|+|.||.+.||+..+.+++|+.||.
T Consensus 521 ~al~~~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~lm~ 587 (587)
T KOG0781|consen 521 RALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATLMK 587 (587)
T ss_pred HHHhcCCCccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHhhC
Confidence 8752 89999999999 68899999999999999999999999999999999999999874
No 22
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=100.00 E-value=2.4e-36 Score=278.49 Aligned_cols=215 Identities=33% Similarity=0.464 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEecccCCChhHHHHHHH
Q psy2881 71 EQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACDTFRAAAYEQLLI 148 (302)
Q Consensus 71 ~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d~~~~~~~~ql~~ 148 (302)
........+.+.+.+....+++ .+.++.+++||||+|+|||||+++||+.+. ....+|.++..|+||++|++|++.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~--~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~ 254 (407)
T COG1419 177 YEDLRYFSEKLRKLLLSLIENL--IVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKT 254 (407)
T ss_pred cchhhhHHHHHHHHHHhhcccc--ccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHH
Confidence 3344556666666666666666 345688999999999999999999999998 567899999999999999999999
Q ss_pred hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|++.+++|+.....+.+.. .|...+.++|+||+||.|+++.+...+++|+.+.... .+-+.+||++++
T Consensus 255 Ya~im~vp~~vv~~~~el~------~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~------~~i~~~Lvlsat 322 (407)
T COG1419 255 YADIMGVPLEVVYSPKELA------EAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVS------HSIEVYLVLSAT 322 (407)
T ss_pred HHHHhCCceEEecCHHHHH------HHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhcc------ccceEEEEEecC
Confidence 9999999998886654433 2234568899999999999999999999999987541 355889999999
Q ss_pred CChhHHHHH-HHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881 229 TGQNTLSQI-KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN 300 (302)
Q Consensus 229 ~g~~~~~~~-~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~ 300 (302)
+..+++..+ +.|+ .++++++|+||+|||..+|.+++++++.++||+|+++||+| +||..++|++||++++|
T Consensus 323 ~K~~dlkei~~~f~-~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g 395 (407)
T COG1419 323 TKYEDLKEIIKQFS-LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILG 395 (407)
T ss_pred cchHHHHHHHHHhc-cCCcceeEEEcccccCchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhc
Confidence 998888775 6774 89999999999999999999999999999999999999999 99999999999999998
No 23
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=7.6e-35 Score=260.72 Aligned_cols=249 Identities=24% Similarity=0.300 Sum_probs=197.7
Q ss_pred ChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceec-------CCCeEE
Q psy2881 30 DKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKK-------CKPFVI 102 (302)
Q Consensus 30 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~~-------~~g~ii 102 (302)
.++.+.+++..|+++||+++++.++.+.....+...+. ..+.+.+. +++++++.+ ++|+++
T Consensus 11 ~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~~-~~~~vl~~-----------v~~~l~~~~~~~~~~~~~~~~i 78 (270)
T PRK06731 11 VPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATM-ITEEVIEY-----------ILEDMSSHFNTENVFEKEVQTI 78 (270)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecCCCc-cccHHHHH-----------HhcccEEeeCCcccccCCCCEE
Confidence 34667899999999999999999988855433322111 11222222 223333333 356899
Q ss_pred EEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH-hCC
Q psy2881 103 MIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ-KKN 181 (302)
Q Consensus 103 ~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al-~~~ 181 (302)
+++||||+||||++.+|++.+...+.+|.+...|.+|.++.+|++.+++..++++.... ++.. ..+.+...- ..+
T Consensus 79 ~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~---~~~~-l~~~l~~l~~~~~ 154 (270)
T PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAA-MTRALTYFKEEAR 154 (270)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC---CHHH-HHHHHHHHHhcCC
Confidence 99999999999999999999887778999999999999999999999999998877643 2322 233343321 247
Q ss_pred CCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCCh-hHHHHHHHHHhhcCCCeEEEecCCCCCch
Q psy2881 182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQ-NTLSQIKEFSKILRITGLIITKLDGTTKG 260 (302)
Q Consensus 182 ~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~-~~~~~~~~f~~~~~~~~~i~tk~d~~~~~ 260 (302)
+|++|+|+||+.+.....++++.++.+. ..+++.++|++++.+. +...+.+.|+. ++++++|+||+||++++
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~------~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~ 227 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQ------VEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASS 227 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhh------hCCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCc
Confidence 8999999999988888888888887653 2466789999998776 66667789974 89999999999999999
Q ss_pred hHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhccC
Q psy2881 261 GILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 261 g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~~ 301 (302)
|.+++++..+++||.|+|+||+| +||+.+++++++++++|.
T Consensus 228 G~~l~~~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~~ 269 (270)
T PRK06731 228 GELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred cHHHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 99999999999999999999999 999999999999999985
No 24
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=4.4e-32 Score=258.95 Aligned_cols=273 Identities=22% Similarity=0.288 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHH----HHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy2881 5 WITRLKESLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNL 80 (302)
Q Consensus 5 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (302)
.|..|+.++..++ +++.++-|+....++.-..+.+.|.+.||++++++.|++.+.... +....+.++.+.
T Consensus 261 ~l~~m~~El~~lR~lle~q~~~l~~~~~~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~------~~~~~~~~l~~~ 334 (559)
T PRK12727 261 ELKQLRGELALMRQMIEREMNRLTDERLRGSPVRAQALELMDDYGFDAGLTRDVAMQIPADT------ELHRGRGLMLGL 334 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccChHHHHHHHHHHHCCCCHHHHHHHHHhhhccc------chhhHHHHHHHH
Confidence 3556666666664 444555554333346677889999999999999999999876542 345567888888
Q ss_pred HHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC--CCeEEEecccCCChhHHHHHHHhcccCCCCee
Q psy2881 81 LVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158 (302)
Q Consensus 81 l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~--~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~ 158 (302)
|.+.+... +.++ +.+|++++|+||+|+|||||+.+|++.+... +++|.+.+.|.+|.++.+|+..|+...++++.
T Consensus 335 L~~~l~v~--~~~~-l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~ 411 (559)
T PRK12727 335 LSKRLPVA--PVDP-LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 411 (559)
T ss_pred HHHhcCcC--cccc-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE
Confidence 88887422 2232 4679999999999999999999999987643 46899999999999999999999999888776
Q ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH-H
Q psy2881 159 SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ-I 237 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~-~ 237 (302)
...... .....+. ...++++||+|+||..+.+..++++|..+.... .....+|++++.+...+.. .
T Consensus 412 ~a~d~~----~L~~aL~--~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-------~~a~lLVLpAtss~~Dl~eii 478 (559)
T PRK12727 412 EADSAE----SLLDLLE--RLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-------QVTSLLVLPANAHFSDLDEVV 478 (559)
T ss_pred ecCcHH----HHHHHHH--HhccCCEEEecCCCcchhhHHHHHHHHHHHHhh-------cCCcEEEEECCCChhHHHHHH
Confidence 543221 2223333 236799999999997777777777776664321 2245678888876655544 4
Q ss_pred HHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN 300 (302)
Q Consensus 238 ~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~ 300 (302)
+.|. ..+++++|+||+|++.++|.+++++..+++||.|+|+||+| +||++|++.+|++++..
T Consensus 479 ~~f~-~~~~~gvILTKlDEt~~lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~ 541 (559)
T PRK12727 479 RRFA-HAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLED 541 (559)
T ss_pred HHHH-hhCCeEEEEecCcCccchhHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHH
Confidence 6665 45789999999999999999999999999999999999999 99999999999998863
No 25
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=3.3e-29 Score=221.06 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=133.0
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH---HHHhcccCCCC------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ---LLILGKYNDVP------ 156 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q---l~~~~~~~~~~------ 156 (302)
+++++++||++++|++++|+||||||||||+++|+|+++|.+|+|.++|.++.+.+..+- +.+++|....+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~ 94 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVY 94 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEe
Confidence 358899999999999999999999999999999999999999999999999876655432 23333332211
Q ss_pred ------------eeecCCCCCHHHHHHH--------------------------HHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 157 ------------VISEKKITDPAAIAFN--------------------------AINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 157 ------------~~~~~~~~~~~~~~~~--------------------------~la~al~~~~~llllDEP~---d~~~ 195 (302)
++......| .+.+.+ .||||++++|+++|+|||| |..+
T Consensus 95 d~V~~GR~p~~~~~~~~~~~D-~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~ 173 (258)
T COG1120 95 ELVLLGRYPHLGLFGRPSKED-EEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173 (258)
T ss_pred ehHhhcCCcccccccCCCHhH-HHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence 111111112 112212 1999999999999999998 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhhcCC-------------CCh-hHHHHHHHHHhhcCCCeEEEecCC
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN-------------TGQ-NTLSQIKEFSKILRITGLIITKLD 255 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~-------------~g~-~~~~~~~~f~~~~~~~~~i~tk~d 255 (302)
+.++++.+++++++.+.+++++.||+.++..++ .|. +.+.+.+.+.+.|+++..+....+
T Consensus 174 Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv~~~~~~~~~ 247 (258)
T COG1120 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDADVIEDPD 247 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCCceEEEEcCC
Confidence 999999999999988999999999999988877 344 667778888889998877776554
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.6e-28 Score=211.84 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=109.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC------CChhHHHHHHHhcccCC------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT------FRAAAYEQLLILGKYND------ 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~------~~~~~~~ql~~~~~~~~------ 154 (302)
++++|+||++.+|++++|+||||||||||++.|.|+++|.+|+|.+.+.+. .+++++.|...+-..+.
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 589999999999999999999999999999999999999999999998754 23444444222111111
Q ss_pred --------CCeeecCCCCCHHHHHHH--------------------------HHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 --------VPVISEKKITDPAAIAFN--------------------------AINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 --------~~~~~~~~~~~~~~~~~~--------------------------~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
..++......| .+.+.+ .|||||+++|++++||||+ |+.++.
T Consensus 98 V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~ 176 (254)
T COG1121 98 VLLGRYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK 176 (254)
T ss_pred HHccCcccccccccccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHH
Confidence 11122111112 122222 2999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.+++.|++++++ |+++++++||+..|.+.+
T Consensus 177 ~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 177 EIYDLLKELRQE-GKTVLMVTHDLGLVMAYF 206 (254)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCcHHhHhhC
Confidence 999999999988 999999999999998866
No 27
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=6.5e-26 Score=196.48 Aligned_cols=139 Identities=19% Similarity=0.110 Sum_probs=106.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH-------HhcccC------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL-------ILGKYN------ 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~-------~~~~~~------ 153 (302)
.+++++||++++||+++|+||+|||||||+++|+|+.+|++|.|.+.|.|+......+... +..|.+
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l 98 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL 98 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC
Confidence 5799999999999999999999999999999999999999999999998876433221111 111111
Q ss_pred -------------------------------CCCeeec---CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 154 -------------------------------DVPVISE---KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 154 -------------------------------~~~~~~~---~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
++.-... .....-.+..+-+||||++.+|++||.|||| |..+.
T Consensus 99 tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~ 178 (226)
T COG1136 99 TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178 (226)
T ss_pred CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHH
Confidence 1110000 0011123344456999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
..+++.+.++++..+.|++++|||..++.
T Consensus 179 ~~V~~ll~~~~~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 179 KEVLELLRELNKERGKTIIMVTHDPELAK 207 (226)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 99999999999988999999999987754
No 28
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.9e-25 Score=194.16 Aligned_cols=140 Identities=18% Similarity=0.132 Sum_probs=106.4
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh----HHHH------HHH-------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA----AYEQ------LLI------- 148 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~----~~~q------l~~------- 148 (302)
..+++|+||++.+||+++|+||+|||||||++.|||+.+|++|+|.+.|..+...+ .+.| |.+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVAL 95 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhee
Confidence 36899999999999999999999999999999999999999999999997642211 0001 111
Q ss_pred ------------------hcccCCCCeeecCCCC--CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881 149 ------------------LGKYNDVPVISEKKIT--DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK 205 (302)
Q Consensus 149 ------------------~~~~~~~~~~~~~~~~--~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~ 205 (302)
+-...|+.-+...++. .-.+..+-+||||++.+|+++|||||+ |..++..+.++|.+
T Consensus 96 ~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~ 175 (248)
T COG1116 96 GLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR 175 (248)
T ss_pred hhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHH
Confidence 1112222212211111 123344456999999999999999997 99999999999999
Q ss_pred HHHHhchhhccccceeehhh
Q psy2881 206 IKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 206 l~~~~~~~i~~~~hd~~lvl 225 (302)
+.+..++|++++|||+..++
T Consensus 176 lw~~~~~TvllVTHdi~EAv 195 (248)
T COG1116 176 LWEETRKTVLLVTHDVDEAV 195 (248)
T ss_pred HHHhhCCEEEEEeCCHHHHH
Confidence 99999999999999877544
No 29
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=2.1e-25 Score=189.25 Aligned_cols=141 Identities=13% Similarity=0.091 Sum_probs=104.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHH----HHhcccCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL----LILGKYND-------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql----~~~~~~~~-------- 154 (302)
.+++++|+++.+|++++|+||+||||||+++||.++..|++|+|.+.|.++.......++ ....|.++
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvl 95 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVL 95 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHH
Confidence 579999999999999999999999999999999999999999999999766422211111 11111111
Q ss_pred ------------------------------CCeeecCCC--CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 155 ------------------------------VPVISEKKI--TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 155 ------------------------------~~~~~~~~~--~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
+.-....++ ..-.+..+-+||||++.+|+++|+|||| ||....++
T Consensus 96 eNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EV 175 (240)
T COG1126 96 ENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175 (240)
T ss_pred HHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHH
Confidence 100000000 0111222334999999999999999998 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
++.++++++. |.|.+++||++-++-+.+
T Consensus 176 L~vm~~LA~e-GmTMivVTHEM~FAr~Va 203 (240)
T COG1126 176 LDVMKDLAEE-GMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HHHHHHHHHc-CCeEEEEechhHHHHHhh
Confidence 9999999876 899999999988865443
No 30
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=4.2e-25 Score=191.36 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=108.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDV-------- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~-------- 155 (302)
.+++++||++++|++++++||+|||||||+++|.+++.|++|+|.++|.++.....++ .+.|.-|..++
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~e 94 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAE 94 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHH
Confidence 5789999999999999999999999999999999999999999999999986543332 23333333221
Q ss_pred -----CeeecCCCCCHH----------------------------HHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 156 -----PVISEKKITDPA----------------------------AIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 156 -----~~~~~~~~~~~~----------------------------~~~~~~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
|-.......... +..+--++||++.+|+++|+|||+ |+-++..+
T Consensus 95 NIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~l 174 (309)
T COG1125 95 NIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL 174 (309)
T ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHH
Confidence 100100000000 111112899999999999999997 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.+++.++.+..++|++++|||+..++.-+
T Consensus 175 Q~e~~~lq~~l~kTivfVTHDidEA~kLa 203 (309)
T COG1125 175 QEEIKELQKELGKTIVFVTHDIDEALKLA 203 (309)
T ss_pred HHHHHHHHHHhCCEEEEEecCHHHHHhhh
Confidence 99999999999999999999998766544
No 31
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.9e-25 Score=187.92 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=108.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI--- 163 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~--- 163 (302)
.++++|||++++||+++||||+|||||||+++|+|+..|+.|+|.++|.++...... +++.|....| ++++..+
T Consensus 18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k-~lr~~r~~iG--mIfQ~~nLv~ 94 (258)
T COG3638 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK-ELRKLRRDIG--MIFQQFNLVP 94 (258)
T ss_pred eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH-HHHHHHHhce--eEeccCCccc
Confidence 578999999999999999999999999999999999999999999999887644332 2233322222 1111000
Q ss_pred ---------------------------CCHHHHH--------------------------HHHHHHHHhCCCCeEEEcCC
Q psy2881 164 ---------------------------TDPAAIA--------------------------FNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 164 ---------------------------~~~~~~~--------------------------~~~la~al~~~~~llllDEP 190 (302)
......+ +-+|||||+++|++||.|||
T Consensus 95 r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEP 174 (258)
T COG3638 95 RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEP 174 (258)
T ss_pred ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCc
Confidence 0011111 11299999999999999999
Q ss_pred C---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
. ||.+...+|+.|+++++..|.|+++..|++.++..++
T Consensus 175 vasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~ 215 (258)
T COG3638 175 VASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYA 215 (258)
T ss_pred ccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHH
Confidence 7 9999999999999999999999999999999887766
No 32
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.1e-25 Score=185.36 Aligned_cols=162 Identities=18% Similarity=0.220 Sum_probs=116.9
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC---------------------hhHHHHH
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR---------------------AAAYEQL 146 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~---------------------~~~~~ql 146 (302)
+++++||++++|++++|+|||||||||++++|+.++.|++|+|.++|.|+.+ ..+.|.+
T Consensus 17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl 96 (245)
T COG4555 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENL 96 (245)
T ss_pred hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHH
Confidence 6789999999999999999999999999999999999999999999999754 3345556
Q ss_pred HHhcccCCCCeeecC--------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LILGKYNDVPVISEK--------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.+++...++.-.... .+.......+-+||||++++|+++++|||+ |..+...+.+.+
T Consensus 97 ~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi 176 (245)
T COG4555 97 KYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176 (245)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHH
Confidence 666555443211000 000001111223999999999999999996 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhh
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAK 268 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~ 268 (302)
+++... +++++++||.+. +.+.++ |.+|+-+-.+....|+.-++..
T Consensus 177 ~q~k~e-gr~viFSSH~m~-------------EvealC-----Drvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 177 KQLKNE-GRAVIFSSHIMQ-------------EVEALC-----DRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHhhcC-CcEEEEecccHH-------------HHHHhh-----heEEEEecCcEEEcCCHHHHHH
Confidence 988754 889999999543 445554 5566656555544444443333
No 33
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.91 E-value=5.7e-25 Score=182.90 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=107.2
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe--------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV-------- 157 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~-------- 157 (302)
.++++++||++++||++.++||+||||||+++.|.+..+|+.|+|.++|.|+.+.... ++-.+.++.|+-|
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~-~iP~LRR~IGvVFQD~rLL~~ 93 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGR-EIPFLRRQIGVVFQDFRLLPD 93 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccccc-ccchhhheeeeEeeecccccc
Confidence 3589999999999999999999999999999999999999999999999998765432 2222333322111
Q ss_pred -----------eecC-CCCC--------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 158 -----------ISEK-KITD--------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 158 -----------~~~~-~~~~--------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
.... .+.+ -.+..+-+||||++.+|+++|.|||| |+...
T Consensus 94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s 173 (223)
T COG2884 94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173 (223)
T ss_pred chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence 0000 0000 01122233999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.++|+.+.++++ .|.|++++|||..++-+.
T Consensus 174 ~~im~lfeeinr-~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 174 WEIMRLFEEINR-LGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHHHhh-cCcEEEEEeccHHHHHhc
Confidence 999999999986 499999999998876543
No 34
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=4.8e-25 Score=190.44 Aligned_cols=143 Identities=12% Similarity=0.187 Sum_probs=105.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH-hcccCCC-------C--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI-LGKYNDV-------P-- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~-~~~~~~~-------~-- 156 (302)
.+++++||++.+|++++|||||||||||++++|+|+++|++|+|.+.|.|+....+.+..+. ..+.+++ .
T Consensus 18 ~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVl 97 (250)
T COG0411 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVL 97 (250)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHH
Confidence 37899999999999999999999999999999999999999999999999876544321100 0000000 0
Q ss_pred ----------------eeecCCCCCHH---HHHHH--------------------------HHHHHHhCCCCeEEEcCCC
Q psy2881 157 ----------------VISEKKITDPA---AIAFN--------------------------AINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 157 ----------------~~~~~~~~~~~---~~~~~--------------------------~la~al~~~~~llllDEP~ 191 (302)
+.......+.. +.+.+ -||||++.+|++|+||||.
T Consensus 98 ENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPa 177 (250)
T COG0411 98 ENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA 177 (250)
T ss_pred HHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCcc
Confidence 00000000111 11111 1999999999999999995
Q ss_pred ---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCCC
Q psy2881 192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNT 229 (302)
Q Consensus 192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~ 229 (302)
.+....++.+.++++.+..+.+++++.||+.+|++.++
T Consensus 178 AGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~d 218 (250)
T COG0411 178 AGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLAD 218 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhcc
Confidence 66667789999999988778999999999999998773
No 35
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=2.2e-24 Score=185.78 Aligned_cols=173 Identities=17% Similarity=0.184 Sum_probs=125.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC------------------ChhHHHHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF------------------RAAAYEQLLI 148 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~------------------~~~~~~ql~~ 148 (302)
.+++|+||++++|++++++||||||||||+++|.|++.|+.|+|.|+|.+.. +....+|+.+
T Consensus 16 ~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~y 95 (300)
T COG4152 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKY 95 (300)
T ss_pred eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHH
Confidence 4789999999999999999999999999999999999999999999997753 1234466666
Q ss_pred hcccCCCCe------------------eecCCCCCH--HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881 149 LGKYNDVPV------------------ISEKKITDP--AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK 205 (302)
Q Consensus 149 ~~~~~~~~~------------------~~~~~~~~~--~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~ 205 (302)
++..-|.+- .....-.+. .....-.+..+++++|+++|||||+ ||-+.+.+-+.+.+
T Consensus 96 la~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~ 175 (300)
T COG4152 96 LAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE 175 (300)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHH
Confidence 666555431 110000000 0001111445789999999999996 99999989999999
Q ss_pred HHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEe
Q psy2881 206 IKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIG 278 (302)
Q Consensus 206 l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~ 278 (302)
+++ .|.|+++++|. +..++.++ |.+.+-+-..+...|.+.++...+|....|+.
T Consensus 176 lk~-~GatIifSsH~-------------Me~vEeLC-----D~llmL~kG~~V~~G~v~~ir~~~Gkk~~~ie 229 (300)
T COG4152 176 LKE-EGATIIFSSHR-------------MEHVEELC-----DRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIE 229 (300)
T ss_pred HHh-cCCEEEEecch-------------HHHHHHHh-----hhhheecCCceEEeccHHHHHHhcCCceEEEe
Confidence 876 49999999994 34556665 33344444456667777777777777777766
No 36
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.2e-24 Score=193.35 Aligned_cols=141 Identities=18% Similarity=0.150 Sum_probs=107.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCC-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV----------- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~----------- 155 (302)
.+++++||++++|++++|||.+|||||||++++.++.+|++|+|.++|.|+...... .++...+..+.
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~-~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEA-ELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChH-HHHHHHhhccEEeccccccccc
Confidence 478999999999999999999999999999999999999999999999887654332 12222222111
Q ss_pred --------CeeecCC-CCCHH--------------------------HHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 156 --------PVISEKK-ITDPA--------------------------AIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 156 --------~~~~~~~-~~~~~--------------------------~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
|+..... ..+.. ++.+-+||||++.+|+++|.|||| ||.+..
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 1100000 00001 111223999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.+++.|++++++.|.|++++||++..+-+-|
T Consensus 179 sIL~LL~~In~~lglTIvlITHEm~Vvk~ic 209 (339)
T COG1135 179 SILELLKDINRELGLTIVLITHEMEVVKRIC 209 (339)
T ss_pred HHHHHHHHHHHHcCCEEEEEechHHHHHHHh
Confidence 9999999999999999999999988766544
No 37
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=3.7e-24 Score=184.31 Aligned_cols=141 Identities=11% Similarity=0.113 Sum_probs=109.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeec------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE------ 160 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~------ 160 (302)
.+++++||++++|++++|+||+|+||||+++.|.|+++|++|+|.+.|.|+...+..++. ...+++|+-|...
T Consensus 22 ~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~-~ir~r~GvlFQ~gALFssl 100 (263)
T COG1127 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY-EIRKRMGVLFQQGALFSSL 100 (263)
T ss_pred EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHH-HHHhheeEEeecccccccc
Confidence 588999999999999999999999999999999999999999999999998765543332 2222222111000
Q ss_pred ------------CCCCCH------------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 161 ------------KKITDP------------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 161 ------------~~~~~~------------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
...... ...-+.+||||++.+|+++++|||+ ||.+
T Consensus 101 tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~ 180 (263)
T COG1127 101 TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS 180 (263)
T ss_pred chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcch
Confidence 000000 1111223999999999999999997 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
...+-++++++++..+.|++++|||+.-+...+
T Consensus 181 a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~ 213 (263)
T COG1127 181 AGVIDELIRELNDALGLTVIMVTHDLDSLLTIA 213 (263)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEECChHHHHhhh
Confidence 999999999999999999999999988776654
No 38
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=2.4e-24 Score=198.03 Aligned_cols=142 Identities=13% Similarity=0.151 Sum_probs=108.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-HHHHhcccC----CCC-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-QLLILGKYN----DVP----- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-ql~~~~~~~----~~~----- 156 (302)
.+++|+||++.+||+++|+|||||||||+|++|||+..|++|+|.++|.|+...+..+ .+..+.|.+ +..
T Consensus 19 ~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NV 98 (352)
T COG3842 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENV 98 (352)
T ss_pred eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHh
Confidence 4789999999999999999999999999999999999999999999999987544321 111111110 000
Q ss_pred ---ee--------------------------ecCCC--CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 157 ---VI--------------------------SEKKI--TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 157 ---~~--------------------------~~~~~--~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
+. ....+ ..-.+..+-+||||++.+|+++|+|||. |...+.++..+
T Consensus 99 afGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~E 178 (352)
T COG3842 99 AFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE 178 (352)
T ss_pred hhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHH
Confidence 00 00000 0001222334999999999999999996 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhcCC
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+++.+..|.|.+++|||...++..+
T Consensus 179 lk~lq~~~giT~i~VTHDqeEAl~ms 204 (352)
T COG3842 179 LKELQRELGITFVYVTHDQEEALAMS 204 (352)
T ss_pred HHHHHHhcCCeEEEEECCHHHHhhhc
Confidence 99999999999999999998877665
No 39
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=2.9e-23 Score=181.43 Aligned_cols=139 Identities=15% Similarity=0.141 Sum_probs=104.6
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--HHHHHHH-hcccCCCCeee-----
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--AYEQLLI-LGKYNDVPVIS----- 159 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--~~~ql~~-~~~~~~~~~~~----- 159 (302)
+.+|+||++++|++++++||||||||||+++|+|++.|++|+|.++|.++++.. ...++.. ++++.+..+--
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds 118 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDS 118 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhh
Confidence 678999999999999999999999999999999999999999999999998621 1111111 12222211100
Q ss_pred ----------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 160 ----------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 160 ----------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
........+.++.-||.+++++|++++||||| |...+.++.+.
T Consensus 119 ~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~F 198 (325)
T COG4586 119 LEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREF 198 (325)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHH
Confidence 00001112222333889999999999999998 88999999999
Q ss_pred HHHHHHHhchhhccccceeehhhc
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+++++..+.|++.+||++.-+..
T Consensus 199 lke~n~~~~aTVllTTH~~~di~~ 222 (325)
T COG4586 199 LKEYNEERQATVLLTTHIFDDIAT 222 (325)
T ss_pred HHHHHHhhCceEEEEecchhhHHH
Confidence 999999999999999998764443
No 40
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=2.6e-23 Score=189.54 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=107.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---------------------hHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---------------------AAYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---------------------~~~~q 145 (302)
.+++++||++++|++++|+||||||||||+++|+|++.|++|+|.+.|.|..+. ...+.
T Consensus 19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~ 98 (293)
T COG1131 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVREN 98 (293)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHH
Confidence 589999999999999999999999999999999999999999999999876531 12333
Q ss_pred HHHhcccCCCC------------------eeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 146 LLILGKYNDVP------------------VISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 146 l~~~~~~~~~~------------------~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
+.+++...+.+ -... .......+..+-.||.|++.+|+++|||||+ |+.....+++.
T Consensus 99 l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~ 178 (293)
T COG1131 99 LEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178 (293)
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 33333333221 0000 0001122333344999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhcCC
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+++++..+.+++++||.+..+...+
T Consensus 179 l~~l~~~g~~tvlissH~l~e~~~~~ 204 (293)
T COG1131 179 LRELAKEGGVTILLSTHILEEAEELC 204 (293)
T ss_pred HHHHHhCCCcEEEEeCCcHHHHHHhC
Confidence 99999875589999999777665533
No 41
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.7e-23 Score=180.80 Aligned_cols=142 Identities=19% Similarity=0.157 Sum_probs=106.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH----HHH-----------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA----YEQ----------------- 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~----~~q----------------- 145 (302)
+++++|||++.+||+++|+|++|||||||.+.|+|+.+|+.|+|.+.|........ ...
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 58899999999999999999999999999999999999999999999965432110 000
Q ss_pred --------------------HHHhcccCCCCe--eecC-CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 146 --------------------LLILGKYNDVPV--ISEK-KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 146 --------------------l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
...+....+++- .... ....-.+..+-+||||+..+|++||+|||+ |...+..+
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 111111122211 0000 001112333445999999999999999998 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
++.|.++.+..+.+.+++|||+.++-.-+
T Consensus 181 lnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 181 LNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred HHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 99999999999999999999988765444
No 42
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.4e-23 Score=172.07 Aligned_cols=142 Identities=18% Similarity=0.251 Sum_probs=108.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~--------- 154 (302)
.+++++|+++++|.+++||||||||||||+.++++++++++|+|.+.|.++...... +.+..+.+...
T Consensus 15 ~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~d 94 (252)
T COG4604 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRD 94 (252)
T ss_pred EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHH
Confidence 589999999999999999999999999999999999999999999999987644322 12222222211
Q ss_pred ------CCeeecCCCCCHHHHHHH--------------------------HHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 155 ------VPVISEKKITDPAAIAFN--------------------------AINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 155 ------~~~~~~~~~~~~~~~~~~--------------------------~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
.|+-......+....+.+ .+|+.++++.|++++|||- |..+...+
T Consensus 95 Lv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~i 174 (252)
T COG4604 95 LVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQI 174 (252)
T ss_pred HhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHH
Confidence 121111111112222222 2788889999999999996 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+.|++++++.++|++++-||+.++-.++
T Consensus 175 Mk~Lrrla~el~KtiviVlHDINfAS~Ys 203 (252)
T COG4604 175 MKILRRLADELGKTIVVVLHDINFASCYS 203 (252)
T ss_pred HHHHHHHHHHhCCeEEEEEecccHHHhhh
Confidence 99999999999999999999999876554
No 43
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.1e-23 Score=192.76 Aligned_cols=141 Identities=11% Similarity=0.115 Sum_probs=106.7
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH--------------------H--
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE--------------------Q-- 145 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~--------------------q-- 145 (302)
+++++|+++.+||+++|+|||||||||||++|||+..|++|+|.+.|.|.......+ .
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 789999999999999999999999999999999999999999999999876432211 0
Q ss_pred ----------------HHHhcccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHH
Q psy2881 146 ----------------LLILGKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELK 204 (302)
Q Consensus 146 ----------------l~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~ 204 (302)
.+..++.+++.-+-.. ....-.+..+-+++||++++|+++|+|||. |...+..+..+|+
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~ 177 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHH
Confidence 1111111111110000 001112223335999999999999999997 8999999999999
Q ss_pred HHHHHhchhhccccceeehhhcCC
Q psy2881 205 KIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 205 ~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
++.+..+.|.+.+|||...++.-+
T Consensus 178 ~lh~~l~~T~IYVTHDq~EAmtla 201 (338)
T COG3839 178 KLHERLGTTTIYVTHDQVEAMTLA 201 (338)
T ss_pred HHHHhcCCcEEEEcCCHHHHHhhC
Confidence 999999999999999988776654
No 44
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.89 E-value=3.6e-23 Score=173.14 Aligned_cols=131 Identities=13% Similarity=0.208 Sum_probs=105.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDP 166 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~ 166 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.......+. +. ..+.+..+ ...
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~---~~--~~i~~~~q---LS~ 85 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDA---RR--AGIAMVYQ---LSV 85 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHH---Hh--cCeEEEEe---cCH
Confidence 57899999999999999999999999999999999999999999999987654332111 11 12333333 334
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 167 AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 167 ~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+..+-++|+|++.+|+++|+|||+ |..+...+.+.|+++.+. +.++++++||...+..
T Consensus 86 G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~ 147 (163)
T cd03216 86 GERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 4555667999999999999999997 999999999999998654 7899999998775443
No 45
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.1e-23 Score=179.00 Aligned_cols=142 Identities=12% Similarity=0.166 Sum_probs=104.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH----HhcccCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL----ILGKYND-------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~----~~~~~~~-------- 154 (302)
.+++++||++++|++++++||||||||||++.|+|+.++.+|+|.+.|.|+.+....+..+ +..+-.+
T Consensus 17 ~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVe 96 (237)
T COG0410 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVE 96 (237)
T ss_pred eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHH
Confidence 4789999999999999999999999999999999999999999999999987655433211 1111100
Q ss_pred ----CCeeecCC--C-CC------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 155 ----VPVISEKK--I-TD------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 155 ----~~~~~~~~--~-~~------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
+..+.... . .. -.+...-+|+||++.+|++++||||+ -|.-.++++
T Consensus 97 ENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~ 176 (237)
T COG0410 97 ENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 176 (237)
T ss_pred HHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHH
Confidence 00011000 0 00 01111223999999999999999997 677788899
Q ss_pred HHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+.++++++..+.+++++.++..++++.+
T Consensus 177 ~~i~~l~~~~g~tIlLVEQn~~~Al~ia 204 (237)
T COG0410 177 EAIKELRKEGGMTILLVEQNARFALEIA 204 (237)
T ss_pred HHHHHHHHcCCcEEEEEeccHHHHHHhh
Confidence 9999999877789998888877766544
No 46
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.89 E-value=3.8e-23 Score=192.05 Aligned_cols=142 Identities=17% Similarity=0.141 Sum_probs=104.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------HHHHhcccCCCC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------QLLILGKYNDVP---- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------ql~~~~~~~~~~---- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+...+.
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 5799999999999999999999999999999999999999999999998875432211 011111111100
Q ss_pred e-----eec-CCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 157 V-----ISE-KKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 157 ~-----~~~-~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+ +.. ..+.. -.+..+-+||||++.+|+++|+|||+ |+.+...
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~ 178 (343)
T TIGR02314 99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQS 178 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 0 000 00000 01111223999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+++.|+++++..+.+++++||++..+...+
T Consensus 179 i~~lL~~l~~~~g~tiiliTH~~~~v~~~~ 208 (343)
T TIGR02314 179 ILELLKEINRRLGLTILLITHEMDVVKRIC 208 (343)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 999999998877899999999998776543
No 47
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.89 E-value=3.5e-23 Score=180.91 Aligned_cols=138 Identities=17% Similarity=0.115 Sum_probs=99.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-------HHHHHhcccCCC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-------EQLLILGKYNDV---- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-------~ql~~~~~~~~~---- 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+....... .++.+..+...+
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL 97 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence 578999999999999999999999999999999999999999999998765432110 111111111100
Q ss_pred Ce------eecCCCC-----------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 156 PV------ISEKKIT-----------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 156 ~~------~~~~~~~-----------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.+ ....... ...+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (218)
T cd03255 98 TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177 (218)
T ss_pred cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHH
Confidence 00 0000000 001111123999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+.+.|+++.+..+.++++++|+...+
T Consensus 178 ~l~~~l~~~~~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 178 EVMELLRELNKEAGTTIVVVTHDPELA 204 (218)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence 999999999765578999999986553
No 48
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.5e-23 Score=186.08 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=105.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc---cCCChhHHH-HHH----Hhccc------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC---DTFRAAAYE-QLL----ILGKY------ 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~---d~~~~~~~~-ql~----~~~~~------ 152 (302)
.++++++++++.||.++|+|||||||||++++|||+..|+.|+|.++|. |..+....+ .+. .|+..
T Consensus 16 ~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa 95 (345)
T COG1118 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVA 95 (345)
T ss_pred cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHH
Confidence 4677999999999999999999999999999999999999999999999 654422111 011 11100
Q ss_pred ----CCCCeeecCC-------------------------CC--CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 153 ----NDVPVISEKK-------------------------IT--DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 153 ----~~~~~~~~~~-------------------------~~--~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+|+.+..... +. .-.+..+-++|||++..|++||||||. |.+-..+
T Consensus 96 ~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~ 175 (345)
T COG1118 96 DNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 175 (345)
T ss_pred hhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHH
Confidence 0111110000 00 011122234999999999999999996 8899999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+..+|+++.+..+.+.+++|||...+++-+
T Consensus 176 lr~wLr~~~~~~~~ttvfVTHD~eea~~la 205 (345)
T COG1118 176 LRRWLRKLHDRLGVTTVFVTHDQEEALELA 205 (345)
T ss_pred HHHHHHHHHHhhCceEEEEeCCHHHHHhhc
Confidence 999999999998999999999998877765
No 49
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.88 E-value=8e-23 Score=173.68 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=105.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHH---hcccCCCCeee-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLI---LGKYNDVPVIS- 159 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~---~~~~~~~~~~~- 159 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.++...... ..+.+ +.+..++.-..
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~ 92 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLAD 92 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhc
Confidence 478999999999999999999999999999999999999999999998876432211 11111 22233332111
Q ss_pred -cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 160 -EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 160 -~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
........+..+-+|+||++.+|+++|+|||+ |..+...+++.|.++.+..+.++++++|+...+.+
T Consensus 93 ~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 11122334555567999999999999999997 99999999999999876546789999998776543
No 50
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4e-23 Score=179.96 Aligned_cols=140 Identities=13% Similarity=0.111 Sum_probs=100.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql 146 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... .+.+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 93 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENI 93 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHH
Confidence 57899999999999999999999999999999999999999999998876532110 1111
Q ss_pred HHh------------------cccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LIL------------------GKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~~------------------~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
... .+..++.-... .......+..+-+||+|++.+|+++|+|||+ |+.+...+++.|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l 173 (213)
T cd03259 94 AFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREEL 173 (213)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 000 00001100000 0001112222334999999999999999998 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhc
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.++.+..+.++++++||...+..
T Consensus 174 ~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 174 KELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred HHHHHHcCCEEEEEecCHHHHHH
Confidence 99977557899999998765443
No 51
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=8.5e-23 Score=173.20 Aligned_cols=138 Identities=12% Similarity=0.112 Sum_probs=104.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--HH---HHHHHhcccCCCCeeecC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--AY---EQLLILGKYNDVPVISEK 161 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--~~---~ql~~~~~~~~~~~~~~~ 161 (302)
++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.+..... .. .++.+..+.... +...
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~--~~~~ 91 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFAL--FPHL 91 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCcc--CCCC
Confidence 5789999999999999999999999999999999999999999999998765332 11 111111221111 0000
Q ss_pred CC-------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 162 KI-------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 162 ~~-------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.. ....+..+-+|++|++.+|+++|+|||+ |..+...+++.|.++++..+.++++++||...+.+
T Consensus 92 t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 92 TVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred CHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 00 2233445556999999999999999997 99999999999999987546899999998776543
No 52
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.88 E-value=8.9e-23 Score=172.30 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=102.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCCeeecCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVPVISEKKI 163 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~~~~~~~~ 163 (302)
++++++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.++...... .++.+..+... ++. ..-
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv 92 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDE--LFS-GSI 92 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCc--ccc-CcH
Confidence 478999999999999999999999999999999999999999999999876533221 11111112111 110 000
Q ss_pred ----CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 164 ----TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 164 ----~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
....+..+-+||+|++.+|+++|+|||+ |+.+...+++.|+++.+ .+.++++++||...+
T Consensus 93 ~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~ 159 (173)
T cd03246 93 AENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETL 159 (173)
T ss_pred HHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH
Confidence 2233445556999999999999999997 99999999999999875 378999999987654
No 53
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.88 E-value=5e-21 Score=161.40 Aligned_cols=172 Identities=52% Similarity=0.770 Sum_probs=144.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhC
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKK 180 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~ 180 (302)
++.++||+|+||||++..++..+...+.+|.+.+.|.++.+..+++..|.+..++++.......++.....+.+..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 68899999999999999999988877789999999999998889999999888888877655556665555666666678
Q ss_pred CCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCch
Q psy2881 181 NTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKG 260 (302)
Q Consensus 181 ~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~ 260 (302)
+++++|+|+|+..+.....+..+..+... ..+....+|+++..+.+.+.....|.+..+++++|+||+|++.+.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~------~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRV------VKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhh------cCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCc
Confidence 89999999999665566777777776542 235677889998877777777788877778999999999999999
Q ss_pred hHHHHhhhHhCCceEEEe
Q psy2881 261 GILAAIAKKYSIPLYFIG 278 (302)
Q Consensus 261 g~~~~~~~~~~~pv~~~~ 278 (302)
|.+++++..+++|+.|+|
T Consensus 156 g~~~~~~~~~~~p~~~~~ 173 (173)
T cd03115 156 GAALSIRAVTGKPIKFIG 173 (173)
T ss_pred chhhhhHHHHCcCeEeeC
Confidence 999999999999999986
No 54
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=7.4e-23 Score=180.95 Aligned_cols=140 Identities=12% Similarity=0.123 Sum_probs=100.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~ 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ...+.+..+...+ .
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT 93 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence 47899999999999999999999999999999999999999999999877543211 0111111111110 0
Q ss_pred e------eec-CCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 157 V------ISE-KKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 157 ~------~~~-~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+ ... ... ....+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 173 (235)
T cd03261 94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173 (235)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 0 000 000 0011112223999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+++.|+++.+..+.++++++||...+..
T Consensus 174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~~~ 202 (235)
T cd03261 174 VIDDLIRSLKKELGLTSIMVTHDLDTAFA 202 (235)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHH
Confidence 99999999876557899999998776543
No 55
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.4e-23 Score=174.17 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=102.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCCeeecCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVPVISEKKI- 163 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~~~~~~~~- 163 (302)
++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.++|.+...... ...+.+..+... ++....-
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~ 91 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS--LYENLTVR 91 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCc--cccCCcHH
Confidence 47899999999999999999999999999999999999999999999987643221 000111111111 1110000
Q ss_pred ----CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 164 ----TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 164 ----~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
....+..+-+||+|++.+|+++|+|||+ |..+...+.+.|+++.+. +.++++++||...+..
T Consensus 92 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~ 160 (173)
T cd03230 92 ENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAER 160 (173)
T ss_pred HHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHH
Confidence 1223444556999999999999999997 999999999999999765 7889999998776543
No 56
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.88 E-value=3.5e-23 Score=189.98 Aligned_cols=141 Identities=15% Similarity=0.107 Sum_probs=103.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVP-------- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~-------- 156 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+... ...+.+..+...+.
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~ 100 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVREN 100 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHH
Confidence 47899999999999999999999999999999999999999999999988643211 11111111111100
Q ss_pred --eeecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 157 --VISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 157 --~~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
++....+ ....+..+-.||+|++.+|+++|+|||+ |+.++..+++.
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~ 180 (306)
T PRK13537 101 LLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER 180 (306)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 0000000 0111222223999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhcCC
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+++.+. +.+++++||++..+...+
T Consensus 181 l~~l~~~-g~till~sH~l~e~~~~~ 205 (306)
T PRK13537 181 LRSLLAR-GKTILLTTHFMEEAERLC 205 (306)
T ss_pred HHHHHhC-CCEEEEECCCHHHHHHhC
Confidence 9999654 889999999988775543
No 57
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.4e-22 Score=170.78 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=100.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCCCeeecCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDVPVISEKKI 163 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~~~~~~~~~ 163 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|.+|+|.+.|.++....... .+.+..+.. .+.....
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~---~~~~~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDP---FLFSGTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCc---hhccchH
Confidence 4789999999999999999999999999999999999999999999998764322211 111111111 1111000
Q ss_pred ----CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 164 ----TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 164 ----~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
....+..+-+||+|++.+|+++|+|||+ |..+...+++.|.++.+ +.++++++||...+.
T Consensus 93 ~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~ 159 (171)
T cd03228 93 RENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEEEEecCHHHHH
Confidence 1223344456999999999999999997 88899999999998853 578999999877653
No 58
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.88 E-value=8.8e-23 Score=178.18 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=100.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~ 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++.+..+...+ .
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT 96 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence 47899999999999999999999999999999999999999999999876532111 1112222221110 0
Q ss_pred ee-----e-cCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 157 VI-----S-EKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 157 ~~-----~-~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+. . .... ....+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 176 (216)
T TIGR00960 97 VYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRD 176 (216)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence 00 0 0000 0011111223999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+.|.++.+. +.+++++|||...+..
T Consensus 177 l~~~l~~~~~~-~~tii~vsH~~~~~~~ 203 (216)
T TIGR00960 177 IMRLFEEFNRR-GTTVLVATHDINLVET 203 (216)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 99999998654 7899999999776544
No 59
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8.7e-23 Score=179.57 Aligned_cols=143 Identities=20% Similarity=0.191 Sum_probs=104.9
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-hhHH---HHHHHhcccCCCCe----
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-AAAY---EQLLILGKYNDVPV---- 157 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-~~~~---~ql~~~~~~~~~~~---- 157 (302)
.++++++||++.+|+.++|+|||||||||+++.++|+++|++|.|.+.|.++.. .... ++..+..|...-.+
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 367899999999999999999999999999999999999999999999887542 1110 01111111111000
Q ss_pred -------eecCCCCCHH---HHH--------------------------HHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 158 -------ISEKKITDPA---AIA--------------------------FNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 158 -------~~~~~~~~~~---~~~--------------------------~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
-....+.... ..+ +-+||.+++.+|+++|+|||| |+.....
T Consensus 97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~ 176 (235)
T COG1122 97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176 (235)
T ss_pred HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence 0000011111 111 113999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+++.++++....+.+++++|||+..+...+
T Consensus 177 l~~~l~~L~~~~~~tii~~tHd~~~~~~~a 206 (235)
T COG1122 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYA 206 (235)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcHHHHHhhC
Confidence 999999999887899999999999877754
No 60
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.88 E-value=1.9e-22 Score=175.62 Aligned_cols=140 Identities=13% Similarity=0.180 Sum_probs=100.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--------------------HHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--------------------AYEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--------------------~~~ql 146 (302)
++++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.... ..+.+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI 93 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence 4789999999999999999999999999999999999999999999887653211 01111
Q ss_pred HHh------------------cccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LIL------------------GKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~~------------------~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
... .+..++.-... .......+..+-+||+|++.+|+++|+|||+ |+.+...+++.|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 173 (213)
T cd03301 94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173 (213)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 100 00000000000 0001111222223999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhc
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+++++..+.++++++||...+..
T Consensus 174 ~~~~~~~~~tvi~~sH~~~~~~~ 196 (213)
T cd03301 174 KRLQQRLGTTTIYVTHDQVEAMT 196 (213)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHH
Confidence 99987667899999998776544
No 61
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=1.3e-22 Score=176.39 Aligned_cols=139 Identities=21% Similarity=0.206 Sum_probs=100.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC--CC---e-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND--VP---V- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~--~~---~- 157 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ...+.+..+... .+ +
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~ 94 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVE 94 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHH
Confidence 47899999999999999999999999999999999999999999999876532111 111111122110 00 0
Q ss_pred -----eecCC-----------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 158 -----ISEKK-----------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 158 -----~~~~~-----------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
..... .....+..+-+||+|++.+|+++|+|||+ |+.+...++
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~ 174 (211)
T cd03225 95 EEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL 174 (211)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 00000 00011111223999999999999999997 999999999
Q ss_pred HHHHHHHHHhchhhccccceeehhhc
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.|.++.+. +.+++++|||...+..
T Consensus 175 ~~l~~~~~~-~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 175 ELLKKLKAE-GKTIIIVTHDLDLLLE 199 (211)
T ss_pred HHHHHHHHc-CCEEEEEeCCHHHHHH
Confidence 999998765 7899999999776544
No 62
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.2e-22 Score=179.52 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=99.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH-------HHHhcccCCC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ-------LLILGKYNDV---- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q-------l~~~~~~~~~---- 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......+. +.+..+...+
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF 102 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence 47899999999999999999999999999999999999999999999987654322110 1111111100
Q ss_pred Ce-----e-ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 156 PV-----I-SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 156 ~~-----~-~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.. + ....... ..+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 103 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 182 (233)
T PRK11629 103 TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182 (233)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 00 0 0000000 01111112899999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+.+.|.++++..+.+++++|||...+
T Consensus 183 ~l~~~l~~~~~~~g~tvii~sH~~~~~ 209 (233)
T PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDLQLA 209 (233)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999999998765578999999987653
No 63
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.4e-22 Score=175.94 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=101.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC----h-------------hHHHHHHHh
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR----A-------------AAYEQLLIL 149 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~----~-------------~~~~ql~~~ 149 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+... . ...+.+...
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALG 97 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998866421 0 111111110
Q ss_pred ------------------cccCCCCee-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHH
Q psy2881 150 ------------------GKYNDVPVI-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKI 206 (302)
Q Consensus 150 ------------------~~~~~~~~~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l 206 (302)
.+..++.-. . ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~ 177 (220)
T cd03293 98 LELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDI 177 (220)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 011111100 0 00111222333345999999999999999997 999999999999998
Q ss_pred HHHhchhhccccceeehhhc
Q psy2881 207 KKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 207 ~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+..+.++++++|+...+..
T Consensus 178 ~~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 178 WRETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred HHHcCCEEEEEecCHHHHHH
Confidence 76667899999998775443
No 64
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=5.7e-23 Score=177.98 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=98.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhccc--------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY-------------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~-------------- 152 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++........+.+..+.
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 93 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL 93 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence 478999999999999999999999999999999999999999999988764210000001111111
Q ss_pred --------------------CCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881 153 --------------------NDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK 207 (302)
Q Consensus 153 --------------------~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~ 207 (302)
.++.-+... ......+..+-+||+|++.+|+++|+|||+ |+.+...+++.|+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 173 (205)
T cd03226 94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173 (205)
T ss_pred hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 000000000 001112222234999999999999999997 9999999999999987
Q ss_pred HHhchhhccccceeehhh
Q psy2881 208 KVIEKKIFELPYEIFLII 225 (302)
Q Consensus 208 ~~~~~~i~~~~hd~~lvl 225 (302)
+. +.+++++||+...+.
T Consensus 174 ~~-~~tii~~sH~~~~~~ 190 (205)
T cd03226 174 AQ-GKAVIVITHDYEFLA 190 (205)
T ss_pred HC-CCEEEEEeCCHHHHH
Confidence 54 789999999876543
No 65
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.88 E-value=1.4e-22 Score=177.51 Aligned_cols=138 Identities=14% Similarity=0.200 Sum_probs=99.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-------HHHHHhcccCCC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-------EQLLILGKYNDV---- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-------~ql~~~~~~~~~---- 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+.+..+...+
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 478999999999999999999999999999999999999999999998775432211 011111111110
Q ss_pred Ce-----e----ecCCC--------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 156 PV-----I----SEKKI--------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 156 ~~-----~----~~~~~--------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.+ + ..... ....+..+-+||+|++.+|+++|+|||+ |..+..
T Consensus 99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 178 (221)
T TIGR02211 99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178 (221)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHH
Confidence 00 0 00000 0001111123999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+.+.|+++.+..+.+++++|||...+
T Consensus 179 ~l~~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 179 IIFDLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999776578999999987654
No 66
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.88 E-value=1.3e-22 Score=191.81 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=103.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCCCe------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDVPV------ 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~~~------ 157 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ ++.+..+.....+
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e 96 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQ 96 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHH
Confidence 5789999999999999999999999999999999999999999999998875432211 1112222211100
Q ss_pred ------ee---cCC--CCCHH--------------------------HHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 158 ------IS---EKK--ITDPA--------------------------AIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 158 ------~~---~~~--~~~~~--------------------------~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.. ... ..... +..+-.||||++++|+++|||||+ |+.++.
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~ 176 (402)
T PRK09536 97 VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV 176 (402)
T ss_pred HHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 00 000 00001 111112999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.+++.|+++++ .+.++++++||+.++...+
T Consensus 177 ~l~~lL~~l~~-~g~TIIivsHdl~~~~~~a 206 (402)
T PRK09536 177 RTLELVRRLVD-DGKTAVAAIHDLDLAARYC 206 (402)
T ss_pred HHHHHHHHHHh-cCCEEEEEECCHHHHHHhC
Confidence 99999999986 4789999999988876543
No 67
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.87 E-value=9.4e-23 Score=186.93 Aligned_cols=141 Identities=18% Similarity=0.136 Sum_probs=102.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCCe-------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVPV------- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~~------- 157 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ..++.+..+...+..
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 47899999999999999999999999999999999999999999999987643211 111222222111100
Q ss_pred ---eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 158 ---ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 158 ---~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
.....+ ....+..+-+||+|++.+|+++|+|||+ |+.+...+++.
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 166 (302)
T TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166 (302)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 000000 0011112223999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhcCC
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+++.+. +.+++++||++..+...+
T Consensus 167 l~~~~~~-g~tvi~~sH~~~~~~~~~ 191 (302)
T TIGR01188 167 IRALKEE-GVTILLTTHYMEEADKLC 191 (302)
T ss_pred HHHHHhC-CCEEEEECCCHHHHHHhC
Confidence 9999754 889999999988776543
No 68
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.87 E-value=1.9e-22 Score=187.41 Aligned_cols=141 Identities=14% Similarity=0.112 Sum_probs=103.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q 145 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+.
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~ 134 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVREN 134 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHH
Confidence 4789999999999999999999999999999999999999999999998754211 1111
Q ss_pred HHHhcccCC------------------CCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 146 LLILGKYND------------------VPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 146 l~~~~~~~~------------------~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
+..++...+ ++-.. ........+..+-.||+|++.+|+++|+|||+ |+.++..+++.
T Consensus 135 l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~ 214 (340)
T PRK13536 135 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 214 (340)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 211111100 00000 00001111222223999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhcCC
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+++.+ .+.+++++||++..+...+
T Consensus 215 l~~l~~-~g~tilisSH~l~e~~~~~ 239 (340)
T PRK13536 215 LRSLLA-RGKTILLTTHFMEEAERLC 239 (340)
T ss_pred HHHHHh-CCCEEEEECCCHHHHHHhC
Confidence 999976 4889999999998776544
No 69
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.1e-22 Score=190.20 Aligned_cols=142 Identities=10% Similarity=0.116 Sum_probs=104.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql 146 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... .+.+
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENM 97 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHH
Confidence 47889999999999999999999999999999999999999999999987643221 1111
Q ss_pred HHh------------------cccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LIL------------------GKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.+. .+..++.-+... ......+..+-+||||++.+|+++|+|||+ |...+..+.+.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l 177 (356)
T PRK11650 98 AYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEI 177 (356)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 110 000111000000 001112223334999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhcCC
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+++.+..+.+++++|||...+...+
T Consensus 178 ~~l~~~~g~tii~vTHd~~ea~~l~ 202 (356)
T PRK11650 178 QRLHRRLKTTSLYVTHDQVEAMTLA 202 (356)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 9998877899999999987666533
No 70
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.87 E-value=2.2e-22 Score=175.35 Aligned_cols=139 Identities=16% Similarity=0.143 Sum_probs=100.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhcccCCC----C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKYNDV----P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~~~~----~ 156 (302)
++++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++...... ..+.+..+...+ .
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT 95 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence 478999999999999999999999999999999999999999999998776432110 111111111100 0
Q ss_pred e------eecCC-----------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 157 V------ISEKK-----------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 157 ~------~~~~~-----------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+ ..... .....+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 175 (214)
T TIGR02673 96 VYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER 175 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence 0 00000 00011122223999999999999999997 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+.|+++.+ .+.+++++||+...+..
T Consensus 176 l~~~l~~~~~-~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 176 ILDLLKRLNK-RGTTVIVATHDLSLVDR 202 (214)
T ss_pred HHHHHHHHHH-cCCEEEEEeCCHHHHHH
Confidence 9999999865 37899999998776554
No 71
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.87 E-value=1.4e-22 Score=189.44 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=104.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH-------HHHhcccCCCC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ-------LLILGKYNDVP--- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q-------l~~~~~~~~~~--- 156 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+. +.+..+...+.
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 47899999999999999999999999999999999999999999999988764332211 11111111100
Q ss_pred -ee------ecCCCC-----------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 157 -VI------SEKKIT-----------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 157 -~~------~~~~~~-----------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+. ....+. ...+..+-.||||++.+|+++|+|||+ |+.+..
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~ 166 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRD 166 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 00 000000 001111122999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.+.+.+.++.+..++|++++|||+..+...+
T Consensus 167 ~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~ 197 (363)
T TIGR01186 167 SMQDELKKLQATLQKTIVFITHDLDEAIRIG 197 (363)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 9999999998777899999999998776643
No 72
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-22 Score=188.12 Aligned_cols=140 Identities=17% Similarity=0.133 Sum_probs=103.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------HHHHhcccCCCC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------QLLILGKYNDVP---- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------ql~~~~~~~~~~---- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+...+.
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t 98 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence 5789999999999999999999999999999999999999999999998765322111 011111111100
Q ss_pred e------eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 157 V------ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 157 ~------~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+ ...... ....+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~ 178 (343)
T PRK11153 99 VFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 0 000000 0111122223999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+++.|+++.+..+.+++++|||+..+..
T Consensus 179 l~~~L~~l~~~~g~tiilvtH~~~~i~~ 206 (343)
T PRK11153 179 ILELLKDINRELGLTIVLITHEMDVVKR 206 (343)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999987668899999999887655
No 73
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.6e-22 Score=177.19 Aligned_cols=140 Identities=17% Similarity=0.153 Sum_probs=101.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhcccCCC----C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKYNDV----P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~~~~----~ 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+.+..+...+ .
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 578999999999999999999999999999999999999999999999876432111 111111111110 0
Q ss_pred e------eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 157 V------ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 157 ~------~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+ ...... ....+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 0 000000 0011111223999999999999999997 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+++.|.++.+..+.++++++|+...+..
T Consensus 179 l~~~l~~~~~~~~~tvii~sH~~~~~~~ 206 (233)
T cd03258 179 ILALLRDINRELGLTIVLITHEMEVVKR 206 (233)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999877667899999998766543
No 74
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.87 E-value=2.1e-22 Score=174.42 Aligned_cols=136 Identities=16% Similarity=0.089 Sum_probs=97.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HH----HHHHhcccCCC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YE----QLLILGKYNDV---- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~----ql~~~~~~~~~---- 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+... .+ .+.+..+...+
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE 91 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence 57899999999999999999999999999999999999999999999887432110 00 01111111000
Q ss_pred Cee------ecC-----------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 156 PVI------SEK-----------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 156 ~~~------~~~-----------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.+. ... ......+..+-.||+|++.+|+++|+|||+ |+.+..
T Consensus 92 t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~ 171 (206)
T TIGR03608 92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRD 171 (206)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHH
Confidence 000 000 000111112223999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeeh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+.+.|+++.+. +.++++++|+...
T Consensus 172 ~l~~~l~~~~~~-~~tii~~sh~~~~ 196 (206)
T TIGR03608 172 EVLDLLLELNDE-GKTIIIVTHDPEV 196 (206)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 999999998754 7899999998764
No 75
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.87 E-value=2.7e-22 Score=171.79 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=97.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-----hHHHHHHHhcccCCCCeee--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-----AAYEQLLILGKYNDVPVIS-- 159 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-----~~~~ql~~~~~~~~~~~~~-- 159 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.+.... .....+.+..+.....++.
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 478999999999999999999999999999999999999999999998765311 0011111111111000000
Q ss_pred ---------cCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 160 ---------EKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 160 ---------~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
...... ..+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 165 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 000000 01111122999999999999999997 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeeh
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
+.+.|.++.+. +.++++++||...
T Consensus 166 ~~~~l~~~~~~-~~tili~sH~~~~ 189 (190)
T TIGR01166 166 MLAILRRLRAE-GMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHc-CCEEEEEeecccc
Confidence 99999998654 7899999999764
No 76
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.87 E-value=2.9e-22 Score=169.90 Aligned_cols=134 Identities=15% Similarity=0.145 Sum_probs=99.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCCeeec----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVPVISE---- 160 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~~~~~---- 160 (302)
++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.++|.+...... ...+.+..+... ++..
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~tv~~ 93 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPY--LFDTTLRN 93 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCe--eecccHHH
Confidence 47899999999999999999999999999999999999999999999876532200 011111111110 1100
Q ss_pred --CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 161 --KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 161 --~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.......+..+-.||+|++.+|+++|+|||+ |..+...+++.|.++. . +.++++++|+...+
T Consensus 94 ~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~ 160 (178)
T cd03247 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTGI 160 (178)
T ss_pred hhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHH
Confidence 1112223445556999999999999999997 8888999999999884 2 78899999987654
No 77
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.87 E-value=2.8e-22 Score=176.38 Aligned_cols=138 Identities=13% Similarity=0.080 Sum_probs=99.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-------HHHHhcccCCC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-------QLLILGKYNDV---- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-------ql~~~~~~~~~---- 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+........ .+.++.+...+
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 4789999999999999999999999999999999999999999999987654322110 11111111110
Q ss_pred Ce-----e-ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 156 PV-----I-SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 156 ~~-----~-~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.. + ....... ..+..+-.||+|++.+|+++|+|||+ |+.+..
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 00 0 0000000 01111112999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+.+.|+++++..+.++++++||...+
T Consensus 184 ~l~~~l~~~~~~~~~tii~~sH~~~~~ 210 (228)
T PRK10584 184 KIADLLFSLNREHGTTLILVTHDLQLA 210 (228)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999999999776678999999987654
No 78
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.87 E-value=3e-22 Score=174.38 Aligned_cols=139 Identities=17% Similarity=0.089 Sum_probs=99.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~ 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ...+.+..+...+ .
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 47899999999999999999999999999999999999999999999877543211 0111111111100 0
Q ss_pred e------eecCC-----------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 157 V------ISEKK-----------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 157 ~------~~~~~-----------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+ ..... .....+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 174 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 0 00000 00011112223999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+.|+++.+. +.++++++|+...+.+
T Consensus 175 ~~~~l~~~~~~-~~tiiivtH~~~~~~~ 201 (214)
T cd03292 175 IMNLLKKINKA-GTTVVVATHAKELVDT 201 (214)
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHH
Confidence 99999998654 7899999998766543
No 79
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=4e-22 Score=163.41 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=106.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCC------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYND------------ 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~------------ 154 (302)
.+++++++.+++||.++||||+|||||||+..+||+-.|++|+|.+.|++......-..-...+...+
T Consensus 24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence 47899999999999999999999999999999999999999999999998764332111111111111
Q ss_pred -------CCeeecC-CCCCHH--------------------------HHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 -------VPVISEK-KITDPA--------------------------AIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 -------~~~~~~~-~~~~~~--------------------------~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+|..-.. ...+.. +..+-+||||++..|++++.|||| |..+-.
T Consensus 104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~ 183 (228)
T COG4181 104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183 (228)
T ss_pred hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence 1110000 011111 122234999999999999999998 888999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.+.+.|..++++.|.|.+++|||..++-.+
T Consensus 184 ~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc 213 (228)
T COG4181 184 KIADLLFALNRERGTTLVLVTHDPQLAARC 213 (228)
T ss_pred HHHHHHHHHhhhcCceEEEEeCCHHHHHhh
Confidence 999999999999999999999998886554
No 80
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=5.8e-23 Score=172.22 Aligned_cols=148 Identities=17% Similarity=0.149 Sum_probs=105.1
Q ss_pred HHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccC
Q psy2881 80 LLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYN 153 (302)
Q Consensus 80 ~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~ 153 (302)
.|.+.++ ++.+++||++++||+++|+||||+||||++.++.|+.+|++|+|.+++.|+....-.+. +.+++|..
T Consensus 9 ~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~ 88 (243)
T COG1137 9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEA 88 (243)
T ss_pred hhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccc
Confidence 4445553 58899999999999999999999999999999999999999999999999875443221 12222221
Q ss_pred CC----Ce------eecCCCCCHH--H-----------------------------HHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881 154 DV----PV------ISEKKITDPA--A-----------------------------IAFNAINIAQKKNTDIVIVDTSG- 191 (302)
Q Consensus 154 ~~----~~------~~~~~~~~~~--~-----------------------------~~~~~la~al~~~~~llllDEP~- 191 (302)
.+ .+ .......+.. . ..+--||||++.+|+++|||||+
T Consensus 89 SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFA 168 (243)
T COG1137 89 SIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFA 168 (243)
T ss_pred hHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCcc
Confidence 10 00 0000000110 0 00011999999999999999996
Q ss_pred --CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
||-...++...++.+.+. |..+++..|++...++-+
T Consensus 169 GVDPiaV~dIq~iI~~L~~r-giGvLITDHNVREtL~i~ 206 (243)
T COG1137 169 GVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDIC 206 (243)
T ss_pred CCCchhHHHHHHHHHHHHhC-CceEEEccccHHHHHhhh
Confidence 999988888888888754 788888999877655543
No 81
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=4.1e-22 Score=168.60 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=96.2
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHH
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPA 167 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~ 167 (302)
++++ +|++++|++++|+||||||||||+++|+|+++|++|+|.+.+.++. +..+.......
T Consensus 15 ~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~------------------~~~q~~~LSgG 75 (177)
T cd03222 15 LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV------------------YKPQYIDLSGG 75 (177)
T ss_pred EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE------------------EEcccCCCCHH
Confidence 5566 4899999999999999999999999999999999999999875421 11111113344
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 168 AIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 168 ~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+..+-++|++++.+|+++|+|||+ |+.+...+.+.+.++.+..+.++++++|+...+..
T Consensus 76 q~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 76 ELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 555667999999999999999997 88999999999999876534789999998776543
No 82
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.1e-22 Score=180.77 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=104.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh----H-HHHHHHhccc---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA----A-YEQLLILGKY--------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~----~-~~ql~~~~~~--------- 152 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... . ..++.+..+.
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 5899999999999999999999999999999999999999999999987653211 0 0011111111
Q ss_pred -----------------------------CCCC---eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 153 -----------------------------NDVP---VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 153 -----------------------------~~~~---~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
.++. +... .......+..+-+||+|++.+|+++|+|||+ |+.+.
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~ 180 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence 1111 0000 0011122333344999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
..+++.|+++++..+.+++++|||+..+...+
T Consensus 181 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~ 212 (287)
T PRK13637 181 DEILNKIKELHKEYNMTIILVSHSMEDVAKLA 212 (287)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 99999999998766889999999988765533
No 83
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.6e-22 Score=174.83 Aligned_cols=140 Identities=17% Similarity=0.138 Sum_probs=99.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCC----Ce---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDV----PV--- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~----~~--- 157 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+...... ...+.+..+.... .+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN 93 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence 47899999999999999999999999999999999999999999998876532110 0001111111100 00
Q ss_pred ---eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 158 ---ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 158 ---~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
...... ....+..+-+||+|++.+|+++|+|||+ |+.+...+.+.
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (220)
T cd03265 94 LYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY 173 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence 000000 0011112223999999999999999998 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhc
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|.++.+..+.++++++||...+..
T Consensus 174 l~~~~~~~~~tvi~~tH~~~~~~~ 197 (220)
T cd03265 174 IEKLKEEFGMTILLTTHYMEEAEQ 197 (220)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999977657899999998776544
No 84
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.87 E-value=4.3e-22 Score=169.48 Aligned_cols=138 Identities=10% Similarity=0.152 Sum_probs=102.0
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCC-CCeeecCC
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYND-VPVISEKK 162 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~-~~~~~~~~ 162 (302)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++........ +.+..+... ..++....
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 94 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLS 94 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCc
Confidence 6899999999999999999999999999999999999999999999988754332111 111111110 00111000
Q ss_pred C---------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 163 I---------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 163 ~---------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
. ....+..+-+||+|++.+|+++|+|||+ |+.+...+.+.|.++.+. +.++++++|+...+.+
T Consensus 95 ~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~ 169 (182)
T cd03215 95 VAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 0 1122333445999999999999999997 999999999999998653 7899999998765544
No 85
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.7e-21 Score=164.92 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=119.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHH---HHhcccCC--CCe----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL---LILGKYND--VPV---- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql---~~~~~~~~--~~~---- 157 (302)
.+++++||++.+||+.+|+||||+|||||++.|+|.+.|++|+|.++|.+...+.+.+.- ..+.+... +||
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~e 94 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQE 94 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHH
Confidence 468899999999999999999999999999999999999999999999988766554322 22333322 222
Q ss_pred ------eecCCCCC---HHHHHHHH--------------------------HHHHHhC------CCCeEEEcCCC---Cc
Q psy2881 158 ------ISEKKITD---PAAIAFNA--------------------------INIAQKK------NTDIVIVDTSG---RL 193 (302)
Q Consensus 158 ------~~~~~~~~---~~~~~~~~--------------------------la~al~~------~~~llllDEP~---d~ 193 (302)
.....+.+ ...++.++ +||.+++ ++.++++|||+ |.
T Consensus 95 VV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi 174 (259)
T COG4559 95 VVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174 (259)
T ss_pred HHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccch
Confidence 11111111 11112221 7787764 34589999998 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeehhhcCC-------------CC-hhHHHHHHHHHhhcCCCeEEE
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN-------------TG-QNTLSQIKEFSKILRITGLII 251 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~-------------~g-~~~~~~~~~f~~~~~~~~~i~ 251 (302)
.++...+...+++++. +..++.+-||+.+...++ .| ++.+...+.....|+.+..|-
T Consensus 175 ~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg~~~~V~ 245 (259)
T COG4559 175 AHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGADIRVG 245 (259)
T ss_pred HHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhCCceeee
Confidence 9999999999999986 578888999999876655 33 366666777777888755444
No 86
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=6e-22 Score=175.62 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=101.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~ 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.+... ...+.+..+...+ .
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLS 94 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCc
Confidence 57899999999999999999999999999999999999999999999987653221 1111122221110 0
Q ss_pred e--------ee---------cCCCCCH--------------------------HHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 157 V--------IS---------EKKITDP--------------------------AAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 157 ~--------~~---------~~~~~~~--------------------------~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
+ .. ....... .+..+-+||+|++.+|+++|+|||+
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 174 (241)
T cd03256 95 VLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174 (241)
T ss_pred HHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 0 00 0000000 1111112999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+++.|+++.+..+.++++++||...+..
T Consensus 175 LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~ 210 (241)
T cd03256 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE 210 (241)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999999987667899999998766543
No 87
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=4.3e-22 Score=175.44 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCCCCe-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYNDVPV----- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~~~----- 157 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+...+..
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence 5789999999999999999999999999999999999999999999987764322111 1111122111000
Q ss_pred -----eecCCCCC---------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 158 -----ISEKKITD---------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 158 -----~~~~~~~~---------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
........ ..+..+-+||+|++.+|+++|+|||+ |+.+...+.+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~ 173 (230)
T TIGR03410 94 ENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV 173 (230)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 00000000 01111122899999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhc
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|.++.+..+.+++++||+...+..
T Consensus 174 l~~~~~~~~~tii~~sH~~~~~~~ 197 (230)
T TIGR03410 174 IRRLRAEGGMAILLVEQYLDFARE 197 (230)
T ss_pred HHHHHHcCCcEEEEEeCCHHHHHH
Confidence 999876557899999998776544
No 88
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=3.3e-22 Score=177.58 Aligned_cols=140 Identities=18% Similarity=0.169 Sum_probs=100.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~ 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++.+..+...+ .
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT 95 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence 47899999999999999999999999999999999999999999999877543211 1111112221110 0
Q ss_pred e-----eec------------CCCCCHHHHH--------------------------HHHHHHHHhCCCCeEEEcCCC--
Q psy2881 157 V-----ISE------------KKITDPAAIA--------------------------FNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 157 ~-----~~~------------~~~~~~~~~~--------------------------~~~la~al~~~~~llllDEP~-- 191 (302)
+ +.. .........+ +-+||+|++.+|+++|+|||+
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 175 (243)
T TIGR02315 96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175 (243)
T ss_pred HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0 000 0000000011 112999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+.+.|.++.+..+.+++++||+...+.+
T Consensus 176 LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~ 211 (243)
T TIGR02315 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKK 211 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999876557899999998766543
No 89
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.4e-22 Score=177.66 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=100.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-----------------hHHHHHHH-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-----------------AAYEQLLI- 148 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-----------------~~~~ql~~- 148 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... ...+.+..
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 94 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFG 94 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhH
Confidence 478999999999999999999999999999999999999999999988664211 11111111
Q ss_pred -----------------hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHH
Q psy2881 149 -----------------LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKI 206 (302)
Q Consensus 149 -----------------~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l 206 (302)
+.+..++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+.+.|.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 174 (255)
T PRK11248 95 LQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL 174 (255)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 00011110000 00001112223334999999999999999998 999999999999998
Q ss_pred HHHhchhhccccceeehhhc
Q psy2881 207 KKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 207 ~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+..+.+++++|||...+..
T Consensus 175 ~~~~g~tviivsH~~~~~~~ 194 (255)
T PRK11248 175 WQETGKQVLLITHDIEEAVF 194 (255)
T ss_pred HHhcCCEEEEEeCCHHHHHH
Confidence 66557899999998776544
No 90
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.87 E-value=2.2e-22 Score=175.28 Aligned_cols=137 Identities=14% Similarity=0.179 Sum_probs=98.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCC-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV----------- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~----------- 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+... ....+.+..+....
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHH--HHhheEEeccccccccCCCCcHHHH
Confidence 57899999999999999999999999999999999999999999998865420 00011111111000
Q ss_pred ---Ceeec-------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 156 ---PVISE-------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 156 ---~~~~~-------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+.... .......+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 00000 0000111112223999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+.|+++++ .+.+++++|||...+..
T Consensus 171 l~~~l~~~~~-~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 171 IYELLRELRR-EGMTILVVTHDLGLVLE 197 (213)
T ss_pred HHHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence 9999999876 47899999999776544
No 91
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.87 E-value=4.2e-22 Score=175.71 Aligned_cols=139 Identities=15% Similarity=0.134 Sum_probs=98.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----Ce-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----PV- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~~- 157 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+......... +.+..+...+ .+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE 93 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence 47899999999999999999999999999999999999999999999876532211110 1111111100 00
Q ss_pred -----eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 158 -----ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 158 -----~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
...... ....+..+-+||+|++.+|+++|+|||+ |..+...++
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~ 173 (232)
T cd03218 94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 000000 0011111223999999999999999997 999999999
Q ss_pred HHHHHHHHHhchhhccccceeehhhc
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.|+++.+ .+.++++++||...+..
T Consensus 174 ~~l~~~~~-~~~tii~~sH~~~~~~~ 198 (232)
T cd03218 174 KIIKILKD-RGIGVLITDHNVRETLS 198 (232)
T ss_pred HHHHHHHH-CCCEEEEEeCCHHHHHH
Confidence 99999875 47899999998765444
No 92
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.9e-22 Score=179.97 Aligned_cols=139 Identities=13% Similarity=0.123 Sum_probs=99.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-------HHHHhcccCC-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-------QLLILGKYND----- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-------ql~~~~~~~~----- 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....... ++.+..+...
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 4789999999999999999999999999999999999999999999887653221100 0111111100
Q ss_pred --------------------------------CCee-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 --------------------------------VPVI-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 --------------------------------~~~~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.-. . ........+..+-+||+|++.+|+++|+|||+ |..+..
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~ 197 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR 197 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 0000 0 00000111122223999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
.+++.|.++.+..+.++++++|+...+.
T Consensus 198 ~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 198 EMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 9999999997655789999999876543
No 93
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.87 E-value=2.1e-22 Score=177.03 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=99.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCC--C---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYND--V--- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~--~--- 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ..++.+..+... +
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 57899999999999999999999999999999999999999999999877543211 011111111110 0
Q ss_pred -Ce-----e---ecCCC------------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 156 -PV-----I---SEKKI------------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 156 -~~-----~---~~~~~------------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
.+ + ..... ....+..+-+||+|++.+|+++|+|||+ |+
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 178 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCH
Confidence 00 0 00000 0001111223999999999999999998 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
.+...+.+.|.++.+..+.++++++||...+.
T Consensus 179 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 210 (228)
T cd03257 179 SVQAQILDLLKKLQEELGLTLLFITHDLGVVA 210 (228)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 99999999999998755789999999876544
No 94
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.6e-22 Score=181.72 Aligned_cols=141 Identities=16% Similarity=0.149 Sum_probs=102.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------HHHHHHHhcccC------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------AYEQLLILGKYN------ 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------~~~ql~~~~~~~------ 153 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ....+.+..+..
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 4899999999999999999999999999999999999999999999987753210 011111111110
Q ss_pred --------------------------------CCC-ee-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 154 --------------------------------DVP-VI-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 154 --------------------------------~~~-~~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
++. .. . ........+..+-+||+|++.+|+++|+|||+ |+.+
T Consensus 101 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~ 180 (286)
T PRK13646 101 DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180 (286)
T ss_pred hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 000 00 0 00001112222334999999999999999997 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
...+++.|+++.+..+.+++++|||...+...
T Consensus 181 ~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~ 212 (286)
T PRK13646 181 KRQVMRLLKSLQTDENKTIILVSHDMNEVARY 212 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 99999999999876688999999998876543
No 95
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.86 E-value=5e-22 Score=173.97 Aligned_cols=139 Identities=12% Similarity=0.157 Sum_probs=99.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCCC----Ce-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYNDV----PV- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~----~~- 157 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+.......+ .+.+..+...+ .+
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 5789999999999999999999999999999999999999999999987654322111 11111111100 00
Q ss_pred -----eecCC-CC---------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH
Q psy2881 158 -----ISEKK-IT---------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR 201 (302)
Q Consensus 158 -----~~~~~-~~---------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~ 201 (302)
..... .. ...+..+-+||+|++.+|+++|+|||+ |..+...+++
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 173 (222)
T cd03224 94 ENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173 (222)
T ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH
Confidence 00000 00 001111123899999999999999997 9999999999
Q ss_pred HHHHHHHHhchhhccccceeehhhc
Q psy2881 202 ELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 202 ~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.|+++.+ .+.++++++||...+..
T Consensus 174 ~l~~~~~-~~~tiii~sH~~~~~~~ 197 (222)
T cd03224 174 AIRELRD-EGVTILLVEQNARFALE 197 (222)
T ss_pred HHHHHHH-CCCEEEEEeCCHHHHHH
Confidence 9999876 57899999998765443
No 96
>PRK10908 cell division protein FtsE; Provisional
Probab=99.86 E-value=5.3e-22 Score=174.01 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=99.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhcccCCC----C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKYNDV----P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~~~~----~ 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+.+..+.... .
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT 95 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence 478999999999999999999999999999999999999999999998775432111 111111111110 0
Q ss_pred e-----eec-CCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 157 V-----ISE-KKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 157 ~-----~~~-~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+ +.. ..... ..+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (222)
T PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175 (222)
T ss_pred HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 0 000 00000 01111223999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+++.|.++.+. +.+++++|||...+..
T Consensus 176 l~~~l~~~~~~-~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 176 ILRLFEEFNRV-GVTVLMATHDIGLISR 202 (222)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 99999998654 7899999998776543
No 97
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.86 E-value=9e-22 Score=176.36 Aligned_cols=142 Identities=10% Similarity=0.030 Sum_probs=101.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-----------------hhHHHHHHH-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-----------------AAAYEQLLI- 148 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-----------------~~~~~ql~~- 148 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+... ....+.+..
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 105 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLG 105 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhc
Confidence 47899999999999999999999999999999999999999999987654210 011111110
Q ss_pred -----------hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhch
Q psy2881 149 -----------LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEK 212 (302)
Q Consensus 149 -----------~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~ 212 (302)
+.+..++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|.++.+..+.
T Consensus 106 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ 185 (257)
T PRK11247 106 LKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185 (257)
T ss_pred ccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 01111111000 00011122333334999999999999999998 999999999999998766678
Q ss_pred hhccccceeehhhcCC
Q psy2881 213 KIFELPYEIFLIIDGN 228 (302)
Q Consensus 213 ~i~~~~hd~~lvl~~~ 228 (302)
+++++|||...+...+
T Consensus 186 tviivsHd~~~~~~~~ 201 (257)
T PRK11247 186 TVLLVTHDVSEAVAMA 201 (257)
T ss_pred EEEEEeCCHHHHHHhC
Confidence 9999999987655433
No 98
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.6e-22 Score=179.91 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=102.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC--C------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND--V------ 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~--~------ 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+.......+ ++.+..+... +
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 4789999999999999999999999999999999999999999999997764221111 1111111100 0
Q ss_pred ---CeeecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 156 ---PVISEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 156 ---~~~~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
.+........ ..+..+-+||+|++.+|+++|+|||+ |+.+...++
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~ 178 (274)
T PRK13647 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM 178 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 0000000000 11111223999999999999999997 999999999
Q ss_pred HHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+.|+++++. +.+++++|||+..+...+
T Consensus 179 ~~l~~~~~~-g~tili~tH~~~~~~~~~ 205 (274)
T PRK13647 179 EILDRLHNQ-GKTVIVATHDVDLAAEWA 205 (274)
T ss_pred HHHHHHHHC-CCEEEEEeCCHHHHHHhC
Confidence 999999764 889999999988775543
No 99
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.86 E-value=5.7e-22 Score=172.53 Aligned_cols=139 Identities=13% Similarity=0.105 Sum_probs=99.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh--hH---HHHHHHhcccCCC----Ce
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA--AA---YEQLLILGKYNDV----PV 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~--~~---~~ql~~~~~~~~~----~~ 157 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++... .. ...+.+..+.... .+
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence 478999999999999999999999999999999999999999999998776321 00 1111111111110 00
Q ss_pred ------eec-CCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 158 ------ISE-KKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 158 ------~~~-~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
... ... ....+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 173 (213)
T cd03262 94 LENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE 173 (213)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 000 000 0011111123899999999999999997 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+.|.++.+ .+.++++++|+...+.+
T Consensus 174 l~~~l~~~~~-~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 174 VLDVMKDLAE-EGMTMVVVTHEMGFARE 200 (213)
T ss_pred HHHHHHHHHH-cCCEEEEEeCCHHHHHH
Confidence 9999999976 47899999998776544
No 100
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=174.16 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=101.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---------------------HHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---------------------YEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---------------------~~q 145 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... .+.
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDN 96 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHH
Confidence 47899999999999999999999999999999999999999999999876532110 000
Q ss_pred HH--------------HhcccCCCC--eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881 146 LL--------------ILGKYNDVP--VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK 205 (302)
Q Consensus 146 l~--------------~~~~~~~~~--~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~ 205 (302)
+. .+.+..++. .... .......+..+-+||+|++.+|+++|+|||+ |..+...+.+.|++
T Consensus 97 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 97 IEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred HhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00 000011111 0000 0011122233334999999999999999997 89999999999999
Q ss_pred HHHHhchhhccccceeehhhc
Q psy2881 206 IKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 206 l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+..+.+++++|||...+..
T Consensus 177 ~~~~~g~tii~~sH~~~~~~~ 197 (241)
T PRK14250 177 LKNKMNLTVIWITHNMEQAKR 197 (241)
T ss_pred HHHhCCCEEEEEeccHHHHHH
Confidence 876557899999998776543
No 101
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.8e-22 Score=177.71 Aligned_cols=139 Identities=11% Similarity=0.067 Sum_probs=99.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH-HHHHHHhcccCCC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA-YEQLLILGKYNDV---------- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~-~~ql~~~~~~~~~---------- 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+... ..++.+..+...+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 95 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV 95 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHH
Confidence 57899999999999999999999999999999999999999999998876432110 0001111111000
Q ss_pred CeeecC---------------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 156 PVISEK---------------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 156 ~~~~~~---------------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
.+.... ......+..+-+||+|++.+|+++|+|||+ |+.+...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l 175 (239)
T cd03296 96 AFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175 (239)
T ss_pred hhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 000000 000111122223999999999999999997 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhh
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
++.|.++++..+.++++++|+...+.
T Consensus 176 ~~~l~~~~~~~~~tvii~sH~~~~~~ 201 (239)
T cd03296 176 RRWLRRLHDELHVTTVFVTHDQEEAL 201 (239)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 99999998755789999999876543
No 102
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.86 E-value=4e-22 Score=186.18 Aligned_cols=142 Identities=14% Similarity=0.155 Sum_probs=105.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql 146 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+...... .+.+
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence 46889999999999999999999999999999999999999999999977642111 1111
Q ss_pred HH------------------hcccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LI------------------LGKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~------------------~~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.+ +.+.+++.-+... ......+..+-+||||++.+|+++|+|||+ |...+..+.+.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 177 (353)
T TIGR03265 98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI 177 (353)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 11 1111111110000 001122333345999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhcCC
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+++.+..+.+++++|||...+...+
T Consensus 178 ~~l~~~~~~tvi~vTHd~~ea~~l~ 202 (353)
T TIGR03265 178 RQLQRRLGVTTIMVTHDQEEALSMA 202 (353)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 9998877899999999998776543
No 103
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.2e-22 Score=185.75 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=105.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql 146 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..... .+.+
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi 99 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENV 99 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHH
Confidence 46889999999999999999999999999999999999999999999977542211 1111
Q ss_pred HH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.+ +.+..++.-+.. .......+..+-+||||++.+|+++|+|||+ |...+..+.+.|
T Consensus 100 ~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 179 (351)
T PRK11432 100 GYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI 179 (351)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 10 111111110000 0011122333345999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhcCC
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+++.+..+.+++++|||...+...+
T Consensus 180 ~~l~~~~g~tii~vTHd~~e~~~la 204 (351)
T PRK11432 180 RELQQQFNITSLYVTHDQSEAFAVS 204 (351)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 9998877899999999998776543
No 104
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.86 E-value=6e-22 Score=171.92 Aligned_cols=139 Identities=14% Similarity=0.078 Sum_probs=99.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH-HHHHHHhcccCCCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA-YEQLLILGKYNDVP--------- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~-~~ql~~~~~~~~~~--------- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ...+.+..+...+.
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 93 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence 57899999999999999999999999999999999999999999999877542100 00111111111000
Q ss_pred -eeecCCC-------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881 157 -VISEKKI-------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK 207 (302)
Q Consensus 157 -~~~~~~~-------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~ 207 (302)
+...... ....+..+-+||+|++.+|+++|+|||+ |+.+...+++.|.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 173 (208)
T cd03268 94 RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR 173 (208)
T ss_pred HHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 0000000 0011111223999999999999999998 9999999999999987
Q ss_pred HHhchhhccccceeehhhc
Q psy2881 208 KVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 208 ~~~~~~i~~~~hd~~lvl~ 226 (302)
+ .+.++++++||...+..
T Consensus 174 ~-~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 174 D-QGITVLISSHLLSEIQK 191 (208)
T ss_pred H-CCCEEEEEcCCHHHHHH
Confidence 6 57899999998776543
No 105
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.3e-21 Score=173.74 Aligned_cols=140 Identities=14% Similarity=0.172 Sum_probs=101.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh----------------------HHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA----------------------AYE 144 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~----------------------~~~ 144 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence 4789999999999999999999999999999999999999999999887643211 111
Q ss_pred HHHHh------------------cccCCCCe--e-ec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 145 QLLIL------------------GKYNDVPV--I-SE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 145 ql~~~------------------~~~~~~~~--~-~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
.+... .+.+++.- . .. .......+..+-+||+|++.+|+++|+|||+ |+.+...+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 174 (242)
T cd03295 95 NIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 11110 01111110 0 00 0001112233344999999999999999997 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhhc
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
++.|.++.+..+.+++++||+...+..
T Consensus 175 ~~~L~~~~~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 175 QEEFKRLQQELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred HHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 999999977557899999998765443
No 106
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.1e-22 Score=187.66 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=102.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-------HHHHhcccCCCC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-------QLLILGKYNDVP--- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-------ql~~~~~~~~~~--- 156 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......+ .+.+..+...+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 3689999999999999999999999999999999999999999999998765322111 011111111100
Q ss_pred -------eeecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 157 -------VISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 157 -------~~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+...... ....+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~ 201 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 0000000 0011112223999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.+++.|.++.+..+++++++|||...+...
T Consensus 202 ~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 202 EMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 999999999876688999999998876553
No 107
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.86 E-value=9.1e-22 Score=172.98 Aligned_cols=138 Identities=11% Similarity=0.097 Sum_probs=99.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhccc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKY----------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~----------- 152 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+.... ..+.+..+.
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en 100 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDN 100 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHH
Confidence 578999999999999999999999999999999999999999999998765322110 001111111
Q ss_pred -----------------------CCCC--eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 153 -----------------------NDVP--VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 153 -----------------------~~~~--~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.++. ... ........+..+-.||+|++.+|+++|+|||+ |+.+...+.+.|
T Consensus 101 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (225)
T PRK10247 101 LIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII 180 (225)
T ss_pred HHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0110 000 00001112222234999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehh
Q psy2881 204 KKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lv 224 (302)
.++.+..+.++++++|+...+
T Consensus 181 ~~~~~~~~~tvii~sh~~~~~ 201 (225)
T PRK10247 181 HRYVREQNIAVLWVTHDKDEI 201 (225)
T ss_pred HHHHHhcCCEEEEEECChHHH
Confidence 998876678999999987664
No 108
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=8.5e-22 Score=171.21 Aligned_cols=138 Identities=16% Similarity=0.142 Sum_probs=98.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC------------------hhHHHHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR------------------AAAYEQLLI 148 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~------------------~~~~~ql~~ 148 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+.+..
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 93 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVY 93 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHH
Confidence 47899999999999999999999999999999999999999999998866421 011121111
Q ss_pred hcc------------------cCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881 149 LGK------------------YNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK 205 (302)
Q Consensus 149 ~~~------------------~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~ 205 (302)
... ..++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+.+.|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~ 173 (210)
T cd03269 94 LAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173 (210)
T ss_pred HHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 110 01110000 00001112222334999999999999999997 99999999999999
Q ss_pred HHHHhchhhccccceeehhh
Q psy2881 206 IKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 206 l~~~~~~~i~~~~hd~~lvl 225 (302)
+.+. +.++++++|+...+.
T Consensus 174 ~~~~-~~tii~~sH~~~~~~ 192 (210)
T cd03269 174 LARA-GKTVILSTHQMELVE 192 (210)
T ss_pred HHHC-CCEEEEECCCHHHHH
Confidence 8754 789999999876543
No 109
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.86 E-value=1.2e-21 Score=173.32 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=100.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYND---------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~---------- 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ...+.+..+...
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 94 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQN 94 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHH
Confidence 47899999999999999999999999999999999999999999998876532111 001111111100
Q ss_pred ---------------------------CCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 155 ---------------------------VPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 155 ---------------------------~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
+.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 174 (236)
T TIGR03864 95 LRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAH 174 (236)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence 00000 00001111222223999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhh
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
|.++.+..+.++++++|+...+.
T Consensus 175 l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 175 VRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHhCCCEEEEEecChhhHh
Confidence 99987655789999999887653
No 110
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.86 E-value=8e-22 Score=172.51 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=98.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCC----e---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVP----V--- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~----~--- 157 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ...+.+..+...+. +
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 95 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREH 95 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHH
Confidence 57899999999999999999999999999999999999999999999877542110 00011111111000 0
Q ss_pred ---eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 158 ---ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 158 ---~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
...... ....+..+-+||+|++.+|+++|+|||+ |+.+...+++.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 175 (220)
T cd03263 96 LRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDL 175 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence 000000 0011111223999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhc
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+++.+ +.++++++|+...+..
T Consensus 176 l~~~~~--~~tii~~sH~~~~~~~ 197 (220)
T cd03263 176 ILEVRK--GRSIILTTHSMDEAEA 197 (220)
T ss_pred HHHHhc--CCEEEEEcCCHHHHHH
Confidence 999865 4789999998776543
No 111
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.86 E-value=1e-21 Score=180.14 Aligned_cols=141 Identities=12% Similarity=0.080 Sum_probs=101.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCC----e---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVP----V--- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~----~--- 157 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+...... ..++.+..+...+. +
T Consensus 18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 97 (303)
T TIGR01288 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVREN 97 (303)
T ss_pred EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHH
Confidence 47899999999999999999999999999999999999999999999876532110 01111111111100 0
Q ss_pred ---eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 158 ---ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 158 ---~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
...... ....+..+-+||+|++.+|+++|+|||+ |+.+...+++.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 177 (303)
T TIGR01288 98 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 177 (303)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 000000 0111122223999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhcCC
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+++.+ .+.+++++|||...+...+
T Consensus 178 l~~~~~-~g~til~~sH~~~~~~~~~ 202 (303)
T TIGR01288 178 LRSLLA-RGKTILLTTHFMEEAERLC 202 (303)
T ss_pred HHHHHh-CCCEEEEECCCHHHHHHhC
Confidence 999875 4889999999988776543
No 112
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.86 E-value=1.6e-21 Score=168.50 Aligned_cols=142 Identities=15% Similarity=0.069 Sum_probs=101.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYND---------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~---------- 154 (302)
.+++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.+...... ..++.++.+...
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 93 (201)
T cd03231 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLEN 93 (201)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHH
Confidence 46899999999999999999999999999999999999999999998877532111 011111111110
Q ss_pred ---------------------CCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881 155 ---------------------VPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK 208 (302)
Q Consensus 155 ---------------------~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~ 208 (302)
+.-... .......+..+-++|+|++.+|+++|+|||+ |+.....+++.|.++.+
T Consensus 94 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 173 (201)
T cd03231 94 LRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173 (201)
T ss_pred HHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 000000 0000112222234999999999999999997 99999999999998865
Q ss_pred HhchhhccccceeehhhcCCC
Q psy2881 209 VIEKKIFELPYEIFLIIDGNT 229 (302)
Q Consensus 209 ~~~~~i~~~~hd~~lvl~~~~ 229 (302)
. +.++++++|+.....++++
T Consensus 174 ~-g~tiii~sH~~~~~~~~~~ 193 (201)
T cd03231 174 R-GGMVVLTTHQDLGLSEAGA 193 (201)
T ss_pred C-CCEEEEEecCchhhhhccc
Confidence 4 7899999998877666553
No 113
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.86 E-value=8.6e-22 Score=172.10 Aligned_cols=139 Identities=16% Similarity=0.136 Sum_probs=99.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCC----Ce---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDV----PV--- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~----~~--- 157 (302)
++++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++..... ..++.+..+...+ .+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 57899999999999999999999999999999999999999999999876542110 0111111111100 00
Q ss_pred ---eecCCCC-----------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 158 ---ISEKKIT-----------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 158 ---~~~~~~~-----------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
....... ...+..+-+||+|++.+|+++|+|||+ |+.+...+++.
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 178 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF 178 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 0000000 001111122999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhc
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|.++.+ .+.++++++|+...+..
T Consensus 179 l~~~~~-~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 179 IRQLRA-LGKCILFSTHIMQEVER 201 (218)
T ss_pred HHHHHH-CCCEEEEEeCCHHHHHH
Confidence 999865 37899999998776543
No 114
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.86 E-value=5.7e-22 Score=170.44 Aligned_cols=135 Identities=16% Similarity=0.089 Sum_probs=100.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEecccCCChhHHHHHHHhcccCCCC----eee-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP----VIS- 159 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~~- 159 (302)
++++++||++.+|++++|+||||||||||+++|+|++ +|.+|+|.++|.++........+.+..+..... +..
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 102 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRET 102 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHH
Confidence 5789999999999999999999999999999999999 999999999998764311111111111111100 000
Q ss_pred -----cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 160 -----EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 160 -----~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
........+..+-+||+|++.+|+++|+|||+ |..+...+.+.|.++.+. +.++++++|+..
T Consensus 103 i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~ 172 (194)
T cd03213 103 LMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPS 172 (194)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCch
Confidence 00012233344456999999999999999997 999999999999998654 789999999875
No 115
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.6e-22 Score=186.34 Aligned_cols=141 Identities=11% Similarity=0.138 Sum_probs=103.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql 146 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... .+.+
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni 96 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENM 96 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHH
Confidence 47899999999999999999999999999999999999999999998876532111 1111
Q ss_pred HH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.. +.+..++.-... .......+..+-+||||++.+|+++|+|||+ |......+++.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L 176 (369)
T PRK11000 97 SFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 176 (369)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11 000111110000 0001112233334999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhcC
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+++.+..+.+++++|||...+...
T Consensus 177 ~~l~~~~g~tvI~vTHd~~~~~~~ 200 (369)
T PRK11000 177 SRLHKRLGRTMIYVTHDQVEAMTL 200 (369)
T ss_pred HHHHHHhCCEEEEEeCCHHHHHHh
Confidence 999876688999999998766543
No 116
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=7.9e-22 Score=171.22 Aligned_cols=139 Identities=16% Similarity=0.103 Sum_probs=99.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCC------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYND------------ 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~------------ 154 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+........+..++.+...
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 95 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLE 95 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHH
Confidence 47899999999999999999999999999999999999999999998876421111111111111110
Q ss_pred ---------------------CCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881 155 ---------------------VPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK 208 (302)
Q Consensus 155 ---------------------~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~ 208 (302)
+...... ......+..+-+||+|++.+|+++|+|||+ |..+...+++.|.++.+
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 175 (207)
T PRK13539 96 FWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA 175 (207)
T ss_pred HHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0000000 000111222233999999999999999997 99999999999999866
Q ss_pred Hhchhhccccceeehhhc
Q psy2881 209 VIEKKIFELPYEIFLIID 226 (302)
Q Consensus 209 ~~~~~i~~~~hd~~lvl~ 226 (302)
. +.++++++|+...+..
T Consensus 176 ~-~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 176 Q-GGIVIAATHIPLGLPG 192 (207)
T ss_pred C-CCEEEEEeCCchhhcc
Confidence 4 8899999999876543
No 117
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=9.4e-22 Score=170.34 Aligned_cols=139 Identities=17% Similarity=0.105 Sum_probs=99.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccC-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYN----------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~----------- 153 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ..++.++.+..
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~ 94 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALEN 94 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHH
Confidence 47899999999999999999999999999999999999999999999876532110 01111111110
Q ss_pred -----------------------CCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881 154 -----------------------DVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK 205 (302)
Q Consensus 154 -----------------------~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~ 205 (302)
++.-... .......+..+-+||+|++.+|+++|+|||+ |+.+...+++.|++
T Consensus 95 l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 174 (204)
T PRK13538 95 LRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174 (204)
T ss_pred HHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 0000000 0000111222223999999999999999997 99999999999999
Q ss_pred HHHHhchhhccccceeehhhc
Q psy2881 206 IKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 206 l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+ .+.+++++|||..++-.
T Consensus 175 ~~~-~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 175 HAE-QGGMVILTTHQDLPVAS 194 (204)
T ss_pred HHH-CCCEEEEEecChhhhcc
Confidence 865 37899999999877644
No 118
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.9e-22 Score=178.50 Aligned_cols=138 Identities=16% Similarity=0.178 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~--------- 154 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+...
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 4789999999999999999999999999999999999999999999998764322111 1111111100
Q ss_pred --CCeeecCCCCCH-----------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 155 --VPVISEKKITDP-----------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 155 --~~~~~~~~~~~~-----------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
+.+.....+... .+..+-+||+|++.+|+++|+|||+ |+.+...++
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 000000000011 1111122999999999999999997 999999999
Q ss_pred HHHHHHHHHhchhhccccceeehh
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
+.|.++++..+.+++++|||...+
T Consensus 181 ~~l~~l~~~~g~tilivtH~~~~~ 204 (279)
T PRK13650 181 KTIKGIRDDYQMTVISITHDLDEV 204 (279)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHH
Confidence 999999876688999999987765
No 119
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.86 E-value=1.6e-21 Score=172.71 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=100.2
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhc-ccCCCC----e-
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILG-KYNDVP----V- 157 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~-~~~~~~----~- 157 (302)
+++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+...... ..++.++. +...+. .
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 358999999999999999999999999999999999999999999998865421110 00111111 100000 0
Q ss_pred -----eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 158 -----ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 158 -----~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
...... ....+..+-.+|+|++.+|+++|+|||+ |+.+...+.
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 193 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR 193 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 000000 0011111223999999999999999997 999999999
Q ss_pred HHHHHHHHHhchhhccccceeehhhcC
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+.|.++.+..+.++++++|+...+...
T Consensus 194 ~~l~~~~~~~~~tiiivsH~~~~~~~~ 220 (236)
T cd03267 194 NFLKEYNRERGTTVLLTSHYMKDIEAL 220 (236)
T ss_pred HHHHHHHhcCCCEEEEEecCHHHHHHh
Confidence 999999766578999999997765443
No 120
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=1.2e-21 Score=183.93 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=101.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc----cCCChhHHH--H-----HHHhcccCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC----DTFRAAAYE--Q-----LLILGKYNDV 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~----d~~~~~~~~--q-----l~~~~~~~~~ 155 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|. ++......+ . +.+..+...+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 4689999999999999999999999999999999999999999999885 332211110 0 1111111110
Q ss_pred -C---e-----ee-cCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 156 -P---V-----IS-EKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 156 -~---~-----~~-~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
+ + +. ...+ ....+..+-.||||++.+|+++|+|||+ |+
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~ 197 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP 197 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 0 0 00 0000 0011111223999999999999999997 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.....+.+.|.++.+..+.|++++|||...+...+
T Consensus 198 ~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~ 232 (382)
T TIGR03415 198 LIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIG 232 (382)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 99999999999998767899999999998776543
No 121
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.86 E-value=1.7e-21 Score=172.18 Aligned_cols=139 Identities=13% Similarity=0.154 Sum_probs=99.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----Ce-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----PV- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~~- 157 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+......... +.+..+...+ .+
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 47899999999999999999999999999999999999999999999876543221110 1111111110 00
Q ss_pred -----eecCC-C--------------------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 158 -----ISEKK-I--------------------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 158 -----~~~~~-~--------------------------------------~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
..... . ....+..+-+||+|++.+|+++|+|||+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 173 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 00000 0 0001111123999999999999999998
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|..+...+++.|+++.+ .+.++++++||...+..
T Consensus 174 LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~ 208 (236)
T cd03219 174 LNPEETEELAELIRELRE-RGITVLLVEHDMDVVMS 208 (236)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHH
Confidence 99999999999999876 57899999998776543
No 122
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.86 E-value=8.1e-22 Score=176.13 Aligned_cols=140 Identities=10% Similarity=0.096 Sum_probs=100.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------H-HHHHHHhc
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------A-YEQLLILG 150 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------~-~~ql~~~~ 150 (302)
++++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.... . ...+.+..
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 4789999999999999999999999999999999999999999999987664211 0 00111111
Q ss_pred ccCCC----Ce-----eec--CCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 151 KYNDV----PV-----ISE--KKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 151 ~~~~~----~~-----~~~--~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
+.... .+ +.. ... ....+..+-+||+|++.+|+++|+|||
T Consensus 94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11100 00 000 000 001111112399999999999999999
Q ss_pred C---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+ |+.+...+.+.|+++.+..+.+++++||+...+.+
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 212 (252)
T TIGR03005 174 TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE 212 (252)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 7 89899999999999887668899999998776544
No 123
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.8e-22 Score=179.48 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=102.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC----hhH---HHHHHHhccc-------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR----AAA---YEQLLILGKY------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~----~~~---~~ql~~~~~~------- 152 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ... ...+.+..+.
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 48999999999999999999999999999999999999999999999976531 000 0001111111
Q ss_pred -------------------------------CCCC-ee-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 153 -------------------------------NDVP-VI-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 153 -------------------------------~~~~-~~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
.++. .. . ........+..+-+||+|++.+|+++|+|||+ |+.+
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 1110 00 0 00001112223334999999999999999998 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
...+++.|+++.+..+.+++++|||+..+...
T Consensus 181 ~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~ 212 (290)
T PRK13634 181 RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARY 212 (290)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 99999999999876688999999998876543
No 124
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.86 E-value=2.2e-21 Score=171.17 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=99.6
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-----------------hHHHHHHHhc-
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-----------------AAYEQLLILG- 150 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-----------------~~~~ql~~~~- 150 (302)
++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...+.+....
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999988764321 1112221110
Q ss_pred -------------------ccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHH
Q psy2881 151 -------------------KYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKI 206 (302)
Q Consensus 151 -------------------~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l 206 (302)
+.+++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 160 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 000110000 00001112222334999999999999999997 999999999999999
Q ss_pred HHHhchhhccccceeehhhcC
Q psy2881 207 KKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 207 ~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.+..+.+++++|||...+...
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~ 181 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLL 181 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHh
Confidence 876678999999987765443
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.1e-22 Score=178.78 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=102.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~--------- 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+...
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 100 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ 100 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence 4789999999999999999999999999999999999999999999998764322111 1111111110
Q ss_pred --CCeeecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 155 --VPVISEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 155 --~~~~~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
+.+........ ..+..+-+||+|++.+|++||+|||+ |+.+...++
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~ 180 (279)
T PRK13635 101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180 (279)
T ss_pred HHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 00000000001 01111122999999999999999997 999999999
Q ss_pred HHHHHHHHHhchhhccccceeehhhc
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.|.++.+..+.++++++||...+..
T Consensus 181 ~~l~~l~~~~~~tilivsH~~~~~~~ 206 (279)
T PRK13635 181 ETVRQLKEQKGITVLSITHDLDEAAQ 206 (279)
T ss_pred HHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 99999987668899999999877653
No 126
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.7e-21 Score=176.58 Aligned_cols=142 Identities=14% Similarity=0.110 Sum_probs=102.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCCee-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVPVI----- 158 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~~~----- 158 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... .++.+..+.....++
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE 97 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence 378999999999999999999999999999999999999999999998875432111 111111111100000
Q ss_pred ------ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 159 ------SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 159 ------~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
......+ ..+..+-+||+|++.+|+++|+|||+ |+.+...++
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~ 177 (277)
T PRK13652 98 QDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177 (277)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0000001 11112223999999999999999997 999999999
Q ss_pred HHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+.|+++.+..+.+++++||+...+...+
T Consensus 178 ~~l~~l~~~~g~tvli~tH~~~~~~~~~ 205 (277)
T PRK13652 178 DFLNDLPETYGMTVIFSTHQLDLVPEMA 205 (277)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 9999998765789999999988776543
No 127
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.85 E-value=7.9e-22 Score=185.28 Aligned_cols=142 Identities=14% Similarity=0.170 Sum_probs=104.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql 146 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... .+.+
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi 107 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENV 107 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHH
Confidence 46889999999999999999999999999999999999999999999987643211 1111
Q ss_pred HH------------------hcccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LI------------------LGKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~------------------~~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.+ +.+..++.-+... ......+..+-+||||++.+|+++|+|||+ |...+..+.+.|
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 187 (375)
T PRK09452 108 AFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL 187 (375)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 10 0001111100000 001112223334999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhcCC
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+++.+..+.+++++|||...+...+
T Consensus 188 ~~l~~~~g~tiI~vTHd~~ea~~la 212 (375)
T PRK09452 188 KALQRKLGITFVFVTHDQEEALTMS 212 (375)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 9998877899999999988766533
No 128
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.4e-21 Score=169.96 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=97.2
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-HHHHHhcccCC----------CCeee
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-EQLLILGKYND----------VPVIS 159 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-~ql~~~~~~~~----------~~~~~ 159 (302)
++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+.+..+... +.+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 89999999999999999999999999999999999999999998765321110 01111111100 00000
Q ss_pred cC--C---------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881 160 EK--K---------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK 207 (302)
Q Consensus 160 ~~--~---------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~ 207 (302)
.. . .....+..+-+||+|++.+|+++|+|||+ |..+...+++.|+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 00 0 00111112223999999999999999997 9999999999999997
Q ss_pred HHhchhhccccceeehhhc
Q psy2881 208 KVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 208 ~~~~~~i~~~~hd~~lvl~ 226 (302)
+..+.+++++||+...+..
T Consensus 176 ~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 176 AETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred HhcCCEEEEEecCHHHHHh
Confidence 7668899999998876544
No 129
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.85 E-value=1.3e-21 Score=160.47 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=93.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDP 166 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~ 166 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.. .+.+..+ ...
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~-----------------~i~~~~~---lS~ 73 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-----------------KIGYFEQ---LSG 73 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE-----------------EEEEEcc---CCH
Confidence 47889999999999999999999999999999999999999999997630 1222222 334
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 167 AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 167 ~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
.+..+-+||+|++.+|+++|+|||+ |..+...+.+.++++ +.++++++|+...+.
T Consensus 74 G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~ 131 (144)
T cd03221 74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHH
Confidence 4455566999999999999999997 888888888888765 468899999876553
No 130
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.3e-22 Score=182.32 Aligned_cols=141 Identities=13% Similarity=0.149 Sum_probs=102.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----CCCeEEEecccCCChhHHHHHH-------Hhccc---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK----RKKSVLLAACDTFRAAAYEQLL-------ILGKY--- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----~~g~V~l~~~d~~~~~~~~ql~-------~~~~~--- 152 (302)
.+++|+||++.+|++++|+|+||||||||++.|+|++++ ++|+|.+.|.++......+..+ +..+.
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 479999999999999999999999999999999999973 7899999998865432211100 01111
Q ss_pred -------------------------------------CCCCe----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 153 -------------------------------------NDVPV----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 153 -------------------------------------~~~~~----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
.+++- .. ........+..+-+||+|++.+|++||+|||
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP 180 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 00000 00 0000011112222399999999999999999
Q ss_pred C---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+ |..++..+++.|+++.+..+.+++++|||+..+...
T Consensus 181 ts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~ 220 (326)
T PRK11022 181 TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEA 220 (326)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 8 999999999999999887788999999998876543
No 131
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.85 E-value=3.7e-21 Score=161.43 Aligned_cols=123 Identities=17% Similarity=0.149 Sum_probs=93.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--------C--CChhHHHHHHHhcccCCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--------T--FRAAAYEQLLILGKYNDVP 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--------~--~~~~~~~ql~~~~~~~~~~ 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. . +.....+.+...
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~------- 87 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP------- 87 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc-------
Confidence 47899999999999999999999999999999999999999999886531 0 000111111110
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
........+..+-++|+|++.+|+++|+|||+ |+.+...+.+.|.++ +.+++++|||..+
T Consensus 88 ---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~ 150 (166)
T cd03223 88 ---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSL 150 (166)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhH
Confidence 11223344555667999999999999999997 888888888888765 5789999998654
No 132
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.85 E-value=1.2e-21 Score=169.22 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=101.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH--hhhCCCeEEEecccCCChhHHHH----HHHhcccCCC-C---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV-P--- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~-~--- 156 (302)
++++++||++.+|++++|+||||||||||++.|+|+ ++|++|+|.++|.++........ +.+..+.... +
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK 93 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCcc
Confidence 478999999999999999999999999999999999 47899999999987754332111 1111111100 0
Q ss_pred e---eecC-CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 157 V---ISEK-KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 157 ~---~~~~-~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
. .... ......+..+-++|+|++.+|+++|+|||+ |..+...+++.|.++.+. +.++++++|+...+.
T Consensus 94 ~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~tiii~sh~~~~~~ 168 (200)
T cd03217 94 NADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITHYQRLLD 168 (200)
T ss_pred HHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHH
Confidence 0 0000 122334445556999999999999999998 888999999999998653 789999999876543
No 133
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.85 E-value=1.2e-21 Score=176.79 Aligned_cols=140 Identities=12% Similarity=0.156 Sum_probs=100.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~ 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ...+.+..+...+ .
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 100 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMN 100 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCC
Confidence 47899999999999999999999999999999999999999999999876542211 0011111111110 0
Q ss_pred ee-------ecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 157 VI-------SEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 157 ~~-------~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+. ..... ....+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 180 (269)
T PRK11831 101 VFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG 180 (269)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 00 00000 0011111223999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+++.|+++.+..+.++++++||...+..
T Consensus 181 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~ 209 (269)
T PRK11831 181 VLVKLISELNSALGVTCVVVSHDVPEVLS 209 (269)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHH
Confidence 99999999976657899999999776544
No 134
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.85 E-value=1e-21 Score=183.42 Aligned_cols=142 Identities=12% Similarity=0.131 Sum_probs=103.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql 146 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..... .+++
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni 95 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI 95 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHH
Confidence 47899999999999999999999999999999999999999999999987642111 1111
Q ss_pred HHhc----------------------ccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 147 LILG----------------------KYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 147 ~~~~----------------------~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
.+.. +..+++-+... ......+..+-+||||++.+|+++|+|||+ |...+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l 175 (353)
T PRK10851 96 AFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL 175 (353)
T ss_pred HhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 1100 00000000000 001112222234999999999999999997 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
++.|+++.+..+.+++++|||...+...+
T Consensus 176 ~~~L~~l~~~~g~tii~vTHd~~ea~~~~ 204 (353)
T PRK10851 176 RRWLRQLHEELKFTSVFVTHDQEEAMEVA 204 (353)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 99999998877889999999998766543
No 135
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=1.8e-21 Score=168.05 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=100.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--HHHHHHHhcccCCCC----ee--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--AYEQLLILGKYNDVP----VI-- 158 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--~~~ql~~~~~~~~~~----~~-- 158 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+.. ...++.++.+..... +.
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 94 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN 94 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHH
Confidence 5789999999999999999999999999999999999999999999987754211 111111111111100 00
Q ss_pred ---ec-CC------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881 159 ---SE-KK------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK 207 (302)
Q Consensus 159 ---~~-~~------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~ 207 (302)
.. .. .....+..+-+||+|++.+|+++|+|||+ |..+...+.+.|.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~ 174 (200)
T PRK13540 95 CLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174 (200)
T ss_pred HHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 00 00 00111222223999999999999999997 9999999999999986
Q ss_pred HHhchhhccccceeehhhc
Q psy2881 208 KVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 208 ~~~~~~i~~~~hd~~lvl~ 226 (302)
+ .+.++++++|+..++-.
T Consensus 175 ~-~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 175 A-KGGAVLLTSHQDLPLNK 192 (200)
T ss_pred H-cCCEEEEEeCCchhccc
Confidence 5 47899999999877533
No 136
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.85 E-value=7.2e-22 Score=177.81 Aligned_cols=139 Identities=13% Similarity=0.166 Sum_probs=100.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------HHHHhcccCC--CC--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------QLLILGKYND--VP-- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------ql~~~~~~~~--~~-- 156 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+... +.
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 104 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPR 104 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCC
Confidence 4789999999999999999999999999999999999999999999987764322110 1111111100 00
Q ss_pred --e----------eecCCC---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881 157 --V----------ISEKKI---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS 194 (302)
Q Consensus 157 --~----------~~~~~~---------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~ 194 (302)
+ ...... ....+..+-+||+|++.+|+++|+|||+ |+.
T Consensus 105 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~ 184 (265)
T TIGR02769 105 MTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184 (265)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0 000000 0011112223999999999999999997 999
Q ss_pred chHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
+...+++.|.++.+..+.++++++||...+.
T Consensus 185 ~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~ 215 (265)
T TIGR02769 185 LQAVILELLRKLQQAFGTAYLFITHDLRLVQ 215 (265)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 9999999999998765789999999977654
No 137
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.85 E-value=1.6e-21 Score=174.85 Aligned_cols=140 Identities=15% Similarity=0.108 Sum_probs=101.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc-----CCChhHHH--H-----HHHhcccCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD-----TFRAAAYE--Q-----LLILGKYND 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d-----~~~~~~~~--q-----l~~~~~~~~ 154 (302)
++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.+ +......+ . +.+..+...
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR 99 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence 57899999999999999999999999999999999999999999999987 43321111 0 111111110
Q ss_pred CCeee---------------c----------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881 155 VPVIS---------------E----------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 155 ~~~~~---------------~----------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~ 191 (302)
..+.. . .......+..+-+||+|++.+|+++|+|||+
T Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt 179 (258)
T PRK11701 100 DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT 179 (258)
T ss_pred cccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 00000 0 0000011112223999999999999999997
Q ss_pred ---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+++.|+++.+..+.++++++|+...+..
T Consensus 180 ~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARL 217 (258)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 99999999999999877657899999999877654
No 138
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.85 E-value=1e-21 Score=183.79 Aligned_cols=141 Identities=15% Similarity=0.145 Sum_probs=104.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC--CeEEEecccCCChhH--------------------HH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK--KSVLLAACDTFRAAA--------------------YE 144 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~--g~V~l~~~d~~~~~~--------------------~~ 144 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++ |+|.+.|.++..... .+
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~e 98 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVED 98 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHH
Confidence 47899999999999999999999999999999999999999 999999877532111 11
Q ss_pred HHHH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH
Q psy2881 145 QLLI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR 201 (302)
Q Consensus 145 ql~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~ 201 (302)
.+.+ +.+..++.-+.. .......+..+-+||||++.+|+++|+|||+ |...+..+.+
T Consensus 99 nl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~ 178 (362)
T TIGR03258 99 NVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMRE 178 (362)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH
Confidence 1111 011111110000 0001122233345999999999999999997 9999999999
Q ss_pred HHHHHHHHh-chhhccccceeehhhcC
Q psy2881 202 ELKKIKKVI-EKKIFELPYEIFLIIDG 227 (302)
Q Consensus 202 ~L~~l~~~~-~~~i~~~~hd~~lvl~~ 227 (302)
.|+++.+.. +.+++++|||...+...
T Consensus 179 ~l~~l~~~~~g~til~vTHd~~ea~~l 205 (362)
T TIGR03258 179 EIAALHEELPELTILCVTHDQDDALTL 205 (362)
T ss_pred HHHHHHHhCCCCEEEEEeCCHHHHHHh
Confidence 999998775 78999999999877653
No 139
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=1.2e-21 Score=173.64 Aligned_cols=139 Identities=9% Similarity=0.084 Sum_probs=99.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH-----HHHHHHhcccCCC----Ce
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA-----YEQLLILGKYNDV----PV 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~-----~~ql~~~~~~~~~----~~ 157 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ...+.+..+...+ .+
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA 94 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence 57899999999999999999999999999999999999999999999987643110 1111112221110 00
Q ss_pred -----eec--CCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 158 -----ISE--KKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 158 -----~~~--~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+.. ..... ..+..+-+||+|++.+|+++|+|||+ |..+...
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (240)
T PRK09493 95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174 (240)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 000 00000 01111112899999999999999997 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+++.|.++.+. +.++++++|+...+..
T Consensus 175 l~~~l~~~~~~-~~tiii~sH~~~~~~~ 201 (240)
T PRK09493 175 VLKVMQDLAEE-GMTMVIVTHEIGFAEK 201 (240)
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHH
Confidence 99999998754 7899999998776543
No 140
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-21 Score=181.69 Aligned_cols=137 Identities=14% Similarity=0.164 Sum_probs=103.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK----- 161 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~----- 161 (302)
.+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.|.++......+ +..+... +.++.+.
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~-~~~~r~~--i~~v~Q~~~~~l 105 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEA-QKLLRQK--IQIVFQNPYGSL 105 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHH-HHHHhCC--EEEEEcCchhhc
Confidence 4789999999999999999999999999999999999999999999998875432211 1111111 1110000
Q ss_pred -----------------------------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881 162 -----------------------------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG--- 191 (302)
Q Consensus 162 -----------------------------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~--- 191 (302)
......+..+-+||+|++.+|++||+|||+
T Consensus 106 ~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~L 185 (327)
T PRK11308 106 NPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL 185 (327)
T ss_pred CCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccC
Confidence 000111122223999999999999999998
Q ss_pred CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|..++..+++.|.++.+..+.+++++|||+.++..
T Consensus 186 D~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~ 220 (327)
T PRK11308 186 DVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEH 220 (327)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999988778999999999887764
No 141
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.85 E-value=1.6e-21 Score=180.75 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=103.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------HHHHhcccCC---CCe
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------QLLILGKYND---VPV 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------ql~~~~~~~~---~~~ 157 (302)
.+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+... .+.
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 114 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR 114 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence 5789999999999999999999999999999999999999999999998875432211 0111111100 000
Q ss_pred e-----------ec---CC---------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 158 I-----------SE---KK---------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 158 ~-----------~~---~~---------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
. .. .. .....+..+-+||+|++.+|++||+|||+ |.
T Consensus 115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~ 194 (331)
T PRK15079 115 MTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDV 194 (331)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 0 00 00 00011111223999999999999999998 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.++..+++.|+++.+..+.+++++|||+.++...
T Consensus 195 ~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~ 228 (331)
T PRK15079 195 SIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHI 228 (331)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9999999999999877788999999999877653
No 142
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.1e-21 Score=178.71 Aligned_cols=141 Identities=10% Similarity=0.088 Sum_probs=101.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh----hHH---HHHHHhcccC------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA----AAY---EQLLILGKYN------ 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~----~~~---~ql~~~~~~~------ 153 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++... ... ..+.+..+..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 478999999999999999999999999999999999999999999999775310 000 0011111110
Q ss_pred --------------------------------CCC--eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 154 --------------------------------DVP--VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 154 --------------------------------~~~--~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
++. +... .......+..+-+||++++.+|+++|+|||+ |+.+
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~ 179 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence 110 0000 0001112223334999999999999999997 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
...+.+.|.++++. +.+++++|||+..+...+
T Consensus 180 ~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~ 211 (288)
T PRK13643 180 RIEMMQLFESIHQS-GQTVVLVTHLMDDVADYA 211 (288)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhC
Confidence 99999999998764 889999999988765533
No 143
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.85 E-value=2.4e-21 Score=170.27 Aligned_cols=140 Identities=20% Similarity=0.193 Sum_probs=101.5
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC----------hhHHHHHHHhcc----
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR----------AAAYEQLLILGK---- 151 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~----------~~~~~ql~~~~~---- 151 (302)
+++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+... ....+.+.....
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~ 114 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGL 114 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCC
Confidence 358999999999999999999999999999999999999999999998865321 112222221110
Q ss_pred --------------cCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhch
Q psy2881 152 --------------YNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEK 212 (302)
Q Consensus 152 --------------~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~ 212 (302)
..++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|.++.+. +.
T Consensus 115 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~ 193 (224)
T cd03220 115 SRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GK 193 (224)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CC
Confidence 01110000 00011122333445999999999999999997 999999999999998765 78
Q ss_pred hhccccceeehhhc
Q psy2881 213 KIFELPYEIFLIID 226 (302)
Q Consensus 213 ~i~~~~hd~~lvl~ 226 (302)
++++++|+...+..
T Consensus 194 tiii~sH~~~~~~~ 207 (224)
T cd03220 194 TVILVSHDPSSIKR 207 (224)
T ss_pred EEEEEeCCHHHHHH
Confidence 99999998766543
No 144
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-21 Score=173.19 Aligned_cols=141 Identities=13% Similarity=0.161 Sum_probs=100.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----Cee
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----PVI 158 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~~~ 158 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++........ +.+..+...+ .+.
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (255)
T PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVI 98 (255)
T ss_pred EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHH
Confidence 57899999999999999999999999999999999999999999999987643221110 0001111100 000
Q ss_pred e----------------cC------CCC--C--------------------------HHHHHHHHHHHHHhCCCCeEEEc
Q psy2881 159 S----------------EK------KIT--D--------------------------PAAIAFNAINIAQKKNTDIVIVD 188 (302)
Q Consensus 159 ~----------------~~------~~~--~--------------------------~~~~~~~~la~al~~~~~llllD 188 (302)
. .. ... . ..+..+-.||+|++.+|+++|+|
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 178 (255)
T PRK11300 99 ENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178 (255)
T ss_pred HHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 00 000 0 00111112999999999999999
Q ss_pred CCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 189 TSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 189 EP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
||+ |+.+...+.+.|.++.+..+.++++++|+...+.+.
T Consensus 179 EPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~ 220 (255)
T PRK11300 179 EPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGI 220 (255)
T ss_pred CCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHh
Confidence 997 999999999999998775578999999987765543
No 145
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=1.5e-21 Score=170.33 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=100.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhccc--------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY-------------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~-------------- 152 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++........+.++.+.
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 104 (214)
T PRK13543 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLH 104 (214)
T ss_pred eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHH
Confidence 478999999999999999999999999999999999999999999988664311000001111111
Q ss_pred --------------------CCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881 153 --------------------NDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK 207 (302)
Q Consensus 153 --------------------~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~ 207 (302)
.+++-... .......+..+-+++++++.+|+++|+|||+ |+.+...+.+.|.++.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (214)
T PRK13543 105 FLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHL 184 (214)
T ss_pred HHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 01100000 0001112223334999999999999999997 9999999999999886
Q ss_pred HHhchhhccccceeehhhcCC
Q psy2881 208 KVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 208 ~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+. +.++++++||...+.+.+
T Consensus 185 ~~-~~tiii~sH~~~~~~~~~ 204 (214)
T PRK13543 185 RG-GGAALVTTHGAYAAPPVR 204 (214)
T ss_pred hC-CCEEEEEecChhhhhhhc
Confidence 54 789999999988766544
No 146
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.2e-21 Score=170.72 Aligned_cols=140 Identities=14% Similarity=0.172 Sum_probs=99.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----Ce-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----PV- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~~- 157 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+.......+. +.+..+...+ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE 98 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHH
Confidence 57899999999999999999999999999999999999999999999987543221111 1111111100 00
Q ss_pred -------eecCCC--------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH
Q psy2881 158 -------ISEKKI--------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR 201 (302)
Q Consensus 158 -------~~~~~~--------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~ 201 (302)
...... ....+..+-+||+|++.+|+++|+|||+ |+.+...+.+
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~ 178 (237)
T PRK11614 99 ENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFD 178 (237)
T ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHH
Confidence 000000 0000111112899999999999999997 9999999999
Q ss_pred HHHHHHHHhchhhccccceeehhhcC
Q psy2881 202 ELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 202 ~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.|+++.+. +.+++++|||...+.+.
T Consensus 179 ~l~~~~~~-~~tiii~sH~~~~~~~~ 203 (237)
T PRK11614 179 TIEQLREQ-GMTIFLVEQNANQALKL 203 (237)
T ss_pred HHHHHHHC-CCEEEEEeCcHHHHHhh
Confidence 99998754 78999999987655443
No 147
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=2.7e-21 Score=172.78 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=99.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc-----CCChhHHHH-------HHHhcccCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD-----TFRAAAYEQ-------LLILGKYND 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d-----~~~~~~~~q-------l~~~~~~~~ 154 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+ +......+. +.+..+...
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR 96 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcc
Confidence 46899999999999999999999999999999999999999999998866 332211100 111111110
Q ss_pred CCeeec-------------CC------------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881 155 VPVISE-------------KK------------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 155 ~~~~~~-------------~~------------------------------~~~~~~~~~~~la~al~~~~~llllDEP~ 191 (302)
..+... .. .....+..+-+||+|++.+|+++|+|||+
T Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~ 176 (253)
T TIGR02323 97 DGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPT 176 (253)
T ss_pred cccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 000000 00 00001112223999999999999999997
Q ss_pred ---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+++.|.++.+..+.++++++|+...+..
T Consensus 177 ~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~ 214 (253)
T TIGR02323 177 GGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARL 214 (253)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999999876667899999998776543
No 148
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.85 E-value=2.1e-21 Score=186.19 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=104.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhc----------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILG---------------- 150 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~---------------- 150 (302)
.++++|||++.+||+++|||++|||||||.+.|+|+++|++|.|.+.|.|+ ... ...++.+.
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~-~~~-~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL-DLT-GGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc-ccc-cchhhhhhhheEEEEeCcccccCc
Confidence 468999999999999999999999999999999999999999999999872 111 00011111
Q ss_pred -------------------------------ccCCCCe--eecCC-CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 151 -------------------------------KYNDVPV--ISEKK-ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 151 -------------------------------~~~~~~~--~~~~~-~~~~~~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
+..+++- ..... ...-.+..+-+||||++.+|++|++|||+ |+
T Consensus 383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence 0111110 00000 00011222334999999999999999997 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
..+..+++.|+++.++.|.+.+++|||+.+|-.-+
T Consensus 463 svqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~ 497 (539)
T COG1123 463 SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA 497 (539)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhC
Confidence 99999999999999999999999999998876554
No 149
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.85 E-value=2.9e-21 Score=174.04 Aligned_cols=140 Identities=15% Similarity=0.161 Sum_probs=100.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhccc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKY----------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~----------- 152 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+.+..+.
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 478999999999999999999999999999999999999999999998765321110 000011111
Q ss_pred -----------------------------CCCC-eeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 153 -----------------------------NDVP-VISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 153 -----------------------------~~~~-~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.++. .... .......+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 186 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRS 186 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHH
Confidence 0010 0000 0001112222234999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+.+.|.++.+..+.++++++|+...+..
T Consensus 187 ~l~~~l~~~~~~~g~tviivsH~~~~~~~ 215 (267)
T PRK15112 187 QLINLMLELQEKQGISYIYVTQHLGMMKH 215 (267)
T ss_pred HHHHHHHHHHHHcCcEEEEEeCCHHHHHH
Confidence 99999999987667899999998766543
No 150
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.85 E-value=4.9e-21 Score=168.88 Aligned_cols=138 Identities=14% Similarity=0.206 Sum_probs=98.3
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----CCCeEEEecccCCChhHH-HHHHHhccc----------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK----RKKSVLLAACDTFRAAAY-EQLLILGKY---------- 152 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----~~g~V~l~~~d~~~~~~~-~ql~~~~~~---------- 152 (302)
+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.|.++...... ..+.+..+.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 46899999999999999999999999999999999998 899999988765321000 000001110
Q ss_pred -----------------------------CCCC----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 153 -----------------------------NDVP----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 153 -----------------------------~~~~----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
.++. ... ........+..+-+||+|++.+|+++|+|||+ |..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 0010 000 00001112233334999999999999999998 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
...+.+.|.++.+..+.++++++|+...+.
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 190 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVA 190 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 999999999987655789999999876543
No 151
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.85 E-value=2.8e-21 Score=169.55 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=97.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--c--cCCChhHHH-------HHHHhcccC--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--C--DTFRAAAYE-------QLLILGKYN-- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--~--d~~~~~~~~-------ql~~~~~~~-- 153 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+ . +........ .+.+..+..
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 478999999999999999999999999999999999999999999973 2 322111100 011111111
Q ss_pred -----------------------------------CCCe-e-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 154 -----------------------------------DVPV-I-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 154 -----------------------------------~~~~-~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d 192 (302)
++.- . . ........+..+-+||+|++.+|+++|+|||+ |
T Consensus 102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 181 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181 (224)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 1100 0 0 00001112222334999999999999999997 9
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+...+.+.|+++.+. +.++++++|+..++..
T Consensus 182 ~~~~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~ 214 (224)
T TIGR02324 182 AANRQVVVELIAEAKAR-GAALIGIFHDEEVREL 214 (224)
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH
Confidence 99999999999998654 7899999999776543
No 152
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-21 Score=175.12 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=99.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH----HHHHHhcccCCC-----C-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY----EQLLILGKYNDV-----P- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~----~ql~~~~~~~~~-----~- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+....... ..+.+..+.... .
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 478999999999999999999999999999999999999999999998876432110 111111111100 0
Q ss_pred -----eeecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 157 -----VISEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 157 -----~~~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
+........ ..+..+-+||+|++.+|+++|+|||+ |+.+...+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 175 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 000000000 01111112999999999999999997 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhh
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
++.|+++.+ .+.+++++|||...+.
T Consensus 176 ~~~l~~l~~-~g~til~~tH~~~~~~ 200 (274)
T PRK13644 176 LERIKKLHE-KGKTIVYITHNLEELH 200 (274)
T ss_pred HHHHHHHHh-CCCEEEEEecCHHHHh
Confidence 999999875 4889999999987753
No 153
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.8e-21 Score=174.34 Aligned_cols=140 Identities=18% Similarity=0.135 Sum_probs=101.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC--CC---e-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND--VP---V- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~--~~---~- 157 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+...... ..++.+..+... .+ +
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 37899999999999999999999999999999999999999999999987643211 111111222110 00 0
Q ss_pred -----eecCC-----------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 158 -----ISEKK-----------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 158 -----~~~~~-----------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
..... .....+..+-+||+|++.+|+++|+|||+ |+.+...++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 182 (269)
T PRK13648 103 YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182 (269)
T ss_pred HHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 00000 00111112223999999999999999997 999999999
Q ss_pred HHHHHHHHHhchhhccccceeehhhc
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.|+++.+..+.++++++|+...+..
T Consensus 183 ~~L~~~~~~~~~tiiivtH~~~~~~~ 208 (269)
T PRK13648 183 DLVRKVKSEHNITIISITHDLSEAME 208 (269)
T ss_pred HHHHHHHHhcCCEEEEEecCchHHhc
Confidence 99999876557899999999876543
No 154
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-21 Score=177.45 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=99.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC--h---hHHHHHHHhcccCCCCee---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR--A---AAYEQLLILGKYNDVPVI--- 158 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~--~---~~~~ql~~~~~~~~~~~~--- 158 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.. . .....+.+..+.....+.
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 94 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTD 94 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccccc
Confidence 47899999999999999999999999999999999999999999999987531 1 001111111221100000
Q ss_pred --------ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 159 --------SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 159 --------~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
....... ..+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~ 174 (271)
T PRK13638 95 IDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174 (271)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 0000000 01111223999999999999999997 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+++.|.++.+. +.++++++||...+..
T Consensus 175 l~~~l~~~~~~-g~tii~vtH~~~~~~~ 201 (271)
T PRK13638 175 MIAIIRRIVAQ-GNHVIISSHDIDLIYE 201 (271)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 99999998754 7899999999877654
No 155
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.5e-21 Score=167.45 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=97.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCC----Cee--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDV----PVI-- 158 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~----~~~-- 158 (302)
++++++||++++| +++|+||||||||||+++|+|+++|++|+|.+.|.++..... ...+.+..+.... .+.
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF 92 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence 4789999999999 999999999999999999999999999999999977543210 1111111111110 000
Q ss_pred ------e-cCCC--------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 159 ------S-EKKI--------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 159 ------~-~~~~--------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
. .... ....+..+-+||+|++.+|+++|+|||+ |+.+...+.+.
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 172 (211)
T cd03264 93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL 172 (211)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 0 0000 0011111223999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhc
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+++++ +.++++++||...+..
T Consensus 173 l~~~~~--~~tii~vsH~~~~~~~ 194 (211)
T cd03264 173 LSELGE--DRIVILSTHIVEDVES 194 (211)
T ss_pred HHHHhC--CCEEEEEcCCHHHHHH
Confidence 999875 4789999998776543
No 156
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.6e-21 Score=171.69 Aligned_cols=139 Identities=11% Similarity=0.092 Sum_probs=98.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCCC----C--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYNDV----P-- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~----~-- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+...+ .
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVY 96 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHH
Confidence 5789999999999999999999999999999999999999999999987754322111 11111111100 0
Q ss_pred ----eeecCC-CCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 157 ----VISEKK-ITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 157 ----~~~~~~-~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
+..... ..+ ..+..+-+||+|++.+|+++|+|||+ |+.+...+
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 176 (241)
T PRK10895 97 DNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176 (241)
T ss_pred HHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 000000 000 01111112999999999999999997 88889999
Q ss_pred HHHHHHHHHHhchhhccccceeehhhc
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+.+.++.+ .+.++++++|+...+..
T Consensus 177 ~~~l~~~~~-~g~tiii~sH~~~~~~~ 202 (241)
T PRK10895 177 KRIIEHLRD-SGLGVLITDHNVRETLA 202 (241)
T ss_pred HHHHHHHHh-cCCEEEEEEcCHHHHHH
Confidence 999988865 47899999998765443
No 157
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.85 E-value=2.8e-21 Score=166.60 Aligned_cols=137 Identities=16% Similarity=0.108 Sum_probs=97.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCC-C-------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDV-P------- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~-~------- 156 (302)
++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.++..... ..++.++.+.... +
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (198)
T TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALEN 93 (198)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHH
Confidence 47899999999999999999999999999999999999999999998876532111 0011111111000 0
Q ss_pred --eeecCCC-------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHH
Q psy2881 157 --VISEKKI-------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKI 206 (302)
Q Consensus 157 --~~~~~~~-------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l 206 (302)
+...... ....+..+-+||+|++.+|+++|+|||+ |..+...+++.|.++
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 94 LHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173 (198)
T ss_pred HHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 0000000 0011122223999999999999999998 889999999999998
Q ss_pred HHHhchhhccccceeehh
Q psy2881 207 KKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 207 ~~~~~~~i~~~~hd~~lv 224 (302)
.+. +.++++++|+....
T Consensus 174 ~~~-~~tii~~sH~~~~~ 190 (198)
T TIGR01189 174 LAR-GGIVLLTTHQDLGL 190 (198)
T ss_pred HhC-CCEEEEEEcccccc
Confidence 654 78999999987543
No 158
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=7.8e-21 Score=155.42 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=108.6
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC---hhHHHHHHHhcccCC--------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR---AAAYEQLLILGKYND-------- 154 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~---~~~~~ql~~~~~~~~-------- 154 (302)
.++++++||++.+|+.++|+||+||||||+++.+|.+..|++|.+.+.|.|+.. .+.+.|+.+.++...
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeD 95 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVED 95 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhh
Confidence 468999999999999999999999999999999999999999999999998753 234566777666532
Q ss_pred ---CCeeecCCCCCHH--------------------------HHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 155 ---VPVISEKKITDPA--------------------------AIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 155 ---~~~~~~~~~~~~~--------------------------~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
+|+.......++. +..+-+|+|-+...|+++|||||| |+.+...+-+.
T Consensus 96 NlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~m 175 (223)
T COG4619 96 NLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175 (223)
T ss_pred ccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHH
Confidence 2222222222221 111223778899999999999998 99999999999
Q ss_pred HHHHHHHhchhhccccceeeh
Q psy2881 203 LKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~l 223 (302)
+.++.+.....++++|||...
T Consensus 176 i~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 176 IHRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred HHHHhhhhceEEEEEecChHH
Confidence 999988778899999998654
No 159
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.7e-21 Score=176.00 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=101.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---h-H---HHHHHHhcccC------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---A-A---YEQLLILGKYN------ 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---~-~---~~ql~~~~~~~------ 153 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++... . . ...+.+..+..
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 100 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE 100 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence 478999999999999999999999999999999999999999999999765321 0 0 00011111110
Q ss_pred --------------------------------CCC--eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 154 --------------------------------DVP--VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 154 --------------------------------~~~--~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
++. +... .......+..+-+||+|++.+|+++|+|||+ |+.+
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180 (287)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 010 0000 0001112222234999999999999999997 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
...+.+.|.++.+ .+.+++++|||...+...+
T Consensus 181 ~~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~ 212 (287)
T PRK13641 181 RKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYA 212 (287)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhC
Confidence 9999999999865 4889999999988765443
No 160
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.85 E-value=1.7e-21 Score=178.47 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=101.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVP-------- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~-------- 156 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+...... ...+.+..+...+.
T Consensus 16 ~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~ 95 (301)
T TIGR03522 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREY 95 (301)
T ss_pred EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHH
Confidence 47899999999999999999999999999999999999999999999977643111 11111111111100
Q ss_pred --eeecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 157 --VISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 157 --~~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
+.....+ ....+..+-.+|+|++.+|+++|+|||+ |+.+...+++.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~ 175 (301)
T TIGR03522 96 LQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNV 175 (301)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 0000000 0111112223999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhcCC
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+++.+ +.+++++||++..+...+
T Consensus 176 l~~~~~--~~tiii~sH~l~~~~~~~ 199 (301)
T TIGR03522 176 IKNIGK--DKTIILSTHIMQEVEAIC 199 (301)
T ss_pred HHHhcC--CCEEEEEcCCHHHHHHhC
Confidence 999864 689999999998776544
No 161
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.9e-21 Score=182.97 Aligned_cols=142 Identities=11% Similarity=0.119 Sum_probs=104.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--------------------HHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--------------------AYEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--------------------~~~ql 146 (302)
.+++++||++.+|++++|+||||||||||+++|+|+.+|++|+|.+.|.+..... ..+.+
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi 112 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNI 112 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHH
Confidence 4688999999999999999999999999999999999999999999997753211 11111
Q ss_pred HH------------------hcccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LI------------------LGKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~------------------~~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.+ +.+..++.-+... ......+..+-+||||++.+|+++|+|||+ |...+..+.+.|
T Consensus 113 ~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 192 (377)
T PRK11607 113 AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192 (377)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11 0011111100000 001122333345999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhcCC
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.++.+..+.+++++|||...+...+
T Consensus 193 ~~l~~~~g~tii~vTHd~~ea~~la 217 (377)
T PRK11607 193 VDILERVGVTCVMVTHDQEEAMTMA 217 (377)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 9998877899999999998776544
No 162
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.8e-21 Score=172.82 Aligned_cols=138 Identities=10% Similarity=0.045 Sum_probs=98.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh------h---HHHHHHHhcccCCC--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA------A---AYEQLLILGKYNDV-- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~------~---~~~ql~~~~~~~~~-- 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++... . ...++.+..+....
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 478999999999999999999999999999999999999999999998765210 0 01111112221110
Q ss_pred --Cee------e-cCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881 156 --PVI------S-EKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS 194 (302)
Q Consensus 156 --~~~------~-~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~ 194 (302)
.+. . .... ....+..+-+||+|++.+|+++|+|||+ |+.
T Consensus 96 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~ 175 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175 (242)
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence 000 0 0000 0011112223999999999999999997 999
Q ss_pred chHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
+...+++.|+++.+ .+.++++++||...+.
T Consensus 176 ~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~ 205 (242)
T PRK11124 176 ITAQIVSIIRELAE-TGITQVIVTHEVEVAR 205 (242)
T ss_pred HHHHHHHHHHHHHH-cCCEEEEEeCCHHHHH
Confidence 99999999999865 4789999999876643
No 163
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=5.2e-21 Score=176.51 Aligned_cols=139 Identities=12% Similarity=0.161 Sum_probs=100.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---------------hHHHH----HH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---------------AAYEQ----LL 147 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---------------~~~~q----l~ 147 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... ..... +.
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 119 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS 119 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence 479999999999999999999999999999999999999999999998665321 01111 11
Q ss_pred HhcccCCCCee----------ec-C------------------------------CCCCHHHHHHHHHHHHHhCCCCeEE
Q psy2881 148 ILGKYNDVPVI----------SE-K------------------------------KITDPAAIAFNAINIAQKKNTDIVI 186 (302)
Q Consensus 148 ~~~~~~~~~~~----------~~-~------------------------------~~~~~~~~~~~~la~al~~~~~lll 186 (302)
+..+.....++ .. . ......+..+-+||+|++.+|+++|
T Consensus 120 ~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLL 199 (320)
T PRK13631 120 MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI 199 (320)
T ss_pred EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 11111100000 00 0 0001112222239999999999999
Q ss_pred EcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 187 VDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 187 lDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+|||+ |+.+...+++.|.++.+. +.|++++|||+..+..
T Consensus 200 LDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~ 241 (320)
T PRK13631 200 FDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLE 241 (320)
T ss_pred EECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH
Confidence 99997 999999999999998754 8899999999886654
No 164
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.6e-21 Score=160.34 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=101.6
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-----------------HHHHH
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-----------------EQLLI 148 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-----------------~ql~~ 148 (302)
.++++++|+++.+|+.+.++||+||||||+++.+||+.+|+.|+|.+++..+...++. +...+
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999865433221 11100
Q ss_pred ------------------hcccCCCC-----eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 149 ------------------LGKYNDVP-----VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 149 ------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
+....++. ++.+.++ .+..+--||||++.+|+++++|||. |.-+++.+.+.
T Consensus 98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSG---GmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQel 174 (259)
T COG4525 98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSG---GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL 174 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecc---hHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHH
Confidence 00001110 0111111 1222233999999999999999996 88889999999
Q ss_pred HHHHHHHhchhhccccceeehh
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lv 224 (302)
|.++.+..|+.++++|||+..+
T Consensus 175 Lldlw~~tgk~~lliTH~ieEA 196 (259)
T COG4525 175 LLDLWQETGKQVLLITHDIEEA 196 (259)
T ss_pred HHHHHHHhCCeEEEEeccHHHH
Confidence 9999999999999999987753
No 165
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.1e-21 Score=176.07 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=99.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------HHHHHHHhcccC------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------AYEQLLILGKYN------ 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------~~~ql~~~~~~~------ 153 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ....+.+..+..
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 4789999999999999999999999999999999999999999999887643210 001111111110
Q ss_pred --------------------------------CCC-ee-ec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 154 --------------------------------DVP-VI-SE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 154 --------------------------------~~~-~~-~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
++. .. .. .......+..+-+||+|++.+|+++|+|||+ |+.+
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 010 00 00 0001112222234999999999999999998 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
...+.+.|+++.+. +.+++++||+...+..
T Consensus 181 ~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~ 210 (280)
T PRK13649 181 RKELMTLFKKLHQS-GMTIVLVTHLMDDVAN 210 (280)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeccHHHHHH
Confidence 99999999998754 7899999999876544
No 166
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-21 Score=177.16 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=98.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCC----C------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV----P------ 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~----~------ 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++........+.+..+.... +
T Consensus 21 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~ 100 (272)
T PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDV 100 (272)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhh
Confidence 478999999999999999999999999999999999999999999988764211000001111111000 0
Q ss_pred ----eee-----cCCCCC--------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 157 ----VIS-----EKKITD--------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 157 ----~~~-----~~~~~~--------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
... ...... ..+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 180 (272)
T PRK15056 101 VMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEAR 180 (272)
T ss_pred eecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 000 000000 01111112999999999999999997 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+.+.|.++++. +.++++++||...+...
T Consensus 181 l~~~L~~~~~~-g~tviivsH~~~~~~~~ 208 (272)
T PRK15056 181 IISLLRELRDE-GKTMLVSTHNLGSVTEF 208 (272)
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHHHHHh
Confidence 99999998754 78999999987665443
No 167
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.7e-21 Score=178.71 Aligned_cols=141 Identities=12% Similarity=0.097 Sum_probs=99.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh------------------------hH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA------------------------AA 142 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~------------------------~~ 142 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+.... ..
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 478999999999999999999999999999999999999999999986543100 00
Q ss_pred ---HHHHHHhcccCCCCeee-----------cCCC------------------------------CCHHHHHHHHHHHHH
Q psy2881 143 ---YEQLLILGKYNDVPVIS-----------EKKI------------------------------TDPAAIAFNAINIAQ 178 (302)
Q Consensus 143 ---~~ql~~~~~~~~~~~~~-----------~~~~------------------------------~~~~~~~~~~la~al 178 (302)
...+.+..+.....++. .... ....+..+-+||+|+
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 00111111211000000 0000 001112222399999
Q ss_pred hCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 179 KKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 179 ~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+.+|+++|+|||+ |+.....+++.|.++.+ .+.+++++|||...+...+
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhC
Confidence 9999999999998 99999999999999875 4889999999988765543
No 168
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.2e-21 Score=174.15 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=99.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccC-----C----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYN-----D---- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~-----~---- 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ...+.+..+.. +
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 102 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVE 102 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHH
Confidence 57899999999999999999999999999999999999999999999877642111 11111111110 0
Q ss_pred --CCeeecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 155 --VPVISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 155 --~~~~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
+.+...... ....+..+-+||+|++.+|+++|+|||+ |+.+...++
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~ 182 (271)
T PRK13632 103 DDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182 (271)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 000000000 0011112223999999999999999997 999999999
Q ss_pred HHHHHHHHHhchhhccccceeehh
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
+.|.++.+..+.++++++|+...+
T Consensus 183 ~~l~~~~~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 183 KIMVDLRKTRKKTLISITHDMDEA 206 (271)
T ss_pred HHHHHHHHhcCcEEEEEEechhHH
Confidence 999998765458999999987765
No 169
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=8.2e-21 Score=167.62 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=101.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql 146 (302)
++++++||++.+|++++|+||||||||||+++|+|.++|++|+|.+.|.+...... .+.+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl 93 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENI 93 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHH
Confidence 57899999999999999999999999999999999999999999998876532111 1111
Q ss_pred HH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.. +.+..++.-... .......+..+-+|++|++.+|+++|+|||+ |..+...+.+.|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l 173 (232)
T cd03300 94 AFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL 173 (232)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 10 000011100000 0001112222334999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhc
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.++.+..+.++++++|+...+..
T Consensus 174 ~~~~~~~~~tiii~sh~~~~~~~ 196 (232)
T cd03300 174 KRLQKELGITFVFVTHDQEEALT 196 (232)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHH
Confidence 99877557899999998776543
No 170
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=6.8e-21 Score=167.78 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=112.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCCCCe-eecCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYNDVPV-ISEKK 162 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~~~~-~~~~~ 162 (302)
.++++|||++.+|++++|||.|||||||+-+.|.++++|++|+|.+.|.|...... .+++..+-+..+++- +...+
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ry 106 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRY 106 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcC
Confidence 57899999999999999999999999999999999999999999999998754332 233333334444321 01111
Q ss_pred C--CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 163 I--TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 163 ~--~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+ ..-.+..+-.||||++.+|++++.|||+ |...+.++++.|.++.+..+.+.++++||+..|-..+
T Consensus 107 PhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 107 PHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred CcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 1 1123344456999999999999999997 9999999999999999999999999999988766554
No 171
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.5e-21 Score=172.66 Aligned_cols=141 Identities=14% Similarity=0.107 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC----Ce--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV----PV-- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~----~~-- 157 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+.++.+.... .+
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE 104 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHH
Confidence 578999999999999999999999999999999999999999999998765321111 111111111110 00
Q ss_pred ------eecC-----CC--------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 158 ------ISEK-----KI--------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 158 ------~~~~-----~~--------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.... .. ....+..+-+||+|++.+|+++|+|||+ |..+..
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 184 (265)
T PRK10575 105 LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 0000 00 0001111112999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.+++.|.++.+..+.++++++|+...+...
T Consensus 185 ~~~~~l~~l~~~~~~tiii~sH~~~~i~~~ 214 (265)
T PRK10575 185 DVLALVHRLSQERGLTVIAVLHDINMAARY 214 (265)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 999999998765578999999998766543
No 172
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=3.5e-21 Score=172.71 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=99.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC----Ce--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV----PV-- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~----~~-- 157 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+.... ..+.+..+...+ .+
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 95 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE 95 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH
Confidence 478999999999999999999999999999999999999999999998765432111 111111121111 00
Q ss_pred ----eecCCC-----------------------------CCHHHHHHHHHHHHHh------CCCCeEEEcCCC---Cccc
Q psy2881 158 ----ISEKKI-----------------------------TDPAAIAFNAINIAQK------KNTDIVIVDTSG---RLST 195 (302)
Q Consensus 158 ----~~~~~~-----------------------------~~~~~~~~~~la~al~------~~~~llllDEP~---d~~~ 195 (302)
...... ....+..+-+||+|++ .+|+++|+|||+ |+.+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~ 175 (258)
T PRK13548 96 VVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175 (258)
T ss_pred HHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHH
Confidence 000000 0001111122899999 599999999997 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
...+++.|.++.+..+.+++++|||...+..
T Consensus 176 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 206 (258)
T PRK13548 176 QHHVLRLARQLAHERGLAVIVVLHDLNLAAR 206 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 9999999999874557899999999776543
No 173
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=5.4e-21 Score=173.72 Aligned_cols=141 Identities=17% Similarity=0.090 Sum_probs=101.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC--hhHH---HHHHHhcccCCCCee---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR--AAAY---EQLLILGKYNDVPVI--- 158 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~--~~~~---~ql~~~~~~~~~~~~--- 158 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+... .... ..+.+..+.....++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 99 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS 99 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcccc
Confidence 47899999999999999999999999999999999999999999999987631 1111 111111121100000
Q ss_pred --------ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 159 --------SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 159 --------~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
....... ..+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~ 179 (283)
T PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179 (283)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 0000000 01111112999999999999999997 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+++.|+++.+..+.++++++||+..+...
T Consensus 180 l~~~l~~l~~~~g~tillvsH~~~~~~~~ 208 (283)
T PRK13636 180 IMKLLVEMQKELGLTIIIATHDIDIVPLY 208 (283)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 99999999876688999999998876543
No 174
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.84 E-value=6.6e-21 Score=167.58 Aligned_cols=138 Identities=13% Similarity=0.124 Sum_probs=99.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh-----hhCCCeEEEecccCCChh--------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF-----KKRKKSVLLAACDTFRAA-------------------- 141 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~-----~~~~g~V~l~~~d~~~~~-------------------- 141 (302)
++++++||++.+|++++|+||||||||||+++|+|++ +|++|+|.+.|.++....
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 93 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF 93 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence 5789999999999999999999999999999999999 899999999887643211
Q ss_pred ---HHHHHHH-------------------hcccCCCCee-ecC---CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 142 ---AYEQLLI-------------------LGKYNDVPVI-SEK---KITDPAAIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 142 ---~~~ql~~-------------------~~~~~~~~~~-~~~---~~~~~~~~~~~~la~al~~~~~llllDEP~---d 192 (302)
..+.+.. +.+..++.-. ... ......+..+-+||+|++.+|+++|+|||+ |
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 173 (227)
T cd03260 94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173 (227)
T ss_pred cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 0011100 0000111000 000 111222333445899999999999999998 9
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+...+++.|+++.+. .++++++||...+..
T Consensus 174 ~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~ 205 (227)
T cd03260 174 PISTAKIEELIAELKKE--YTIVIVTHNMQQAAR 205 (227)
T ss_pred HHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHH
Confidence 99999999999999764 789999998776543
No 175
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6e-21 Score=173.18 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=101.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH----HHHHHHhcccCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA----YEQLLILGKYND-------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~----~~ql~~~~~~~~-------- 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ...+.+..+...
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 103 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV 103 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence 48999999999999999999999999999999999999999999999877643211 111111111110
Q ss_pred ---CCeeecCCCCCH-----------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 155 ---VPVISEKKITDP-----------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 155 ---~~~~~~~~~~~~-----------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
+.+......... .+..+-+||+|++.+|+++|+|||+ |+.+...+
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l 183 (280)
T PRK13633 104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREV 183 (280)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 000000000010 1111112999999999999999997 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhhc
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
++.|+++++..+.++++++|+...+..
T Consensus 184 ~~~l~~l~~~~g~tillvtH~~~~~~~ 210 (280)
T PRK13633 184 VNTIKELNKKYGITIILITHYMEEAVE 210 (280)
T ss_pred HHHHHHHHHhcCCEEEEEecChHHHhc
Confidence 999999977668899999999887654
No 176
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.84 E-value=2.9e-21 Score=172.28 Aligned_cols=138 Identities=12% Similarity=0.111 Sum_probs=98.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh----------H-HHHHHHhcccCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA----------A-YEQLLILGKYNDV 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~----------~-~~ql~~~~~~~~~ 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... . ...+.+..+...+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 5789999999999999999999999999999999999999999999887653210 0 0011111111100
Q ss_pred ----Cee------e-cCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 156 ----PVI------S-EKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 156 ----~~~------~-~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d 192 (302)
... . .... ....+..+-+||+|++.+|+++|+|||+ |
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD 176 (250)
T PRK11264 97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176 (250)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 000 0 0000 0011112223999999999999999998 9
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
..+...+++.|.++.+. +.++++++||...+.
T Consensus 177 ~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~ 208 (250)
T PRK11264 177 PELVGEVLNTIRQLAQE-KRTMVIVTHEMSFAR 208 (250)
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 99999999999998754 789999999876543
No 177
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.84 E-value=2.3e-21 Score=179.55 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=103.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCChhHHHHH-------HHhcccC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRAAAYEQL-------LILGKYN--- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~~~~~ql-------~~~~~~~--- 153 (302)
.+++++||++++|++++|+|+||||||||+++|+|+++|. +|+|.++|.++.+....+.. .+..+..
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 109 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS 109 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence 4789999999999999999999999999999999999985 99999999887543221100 0001110
Q ss_pred -------------------------------------CCCe----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881 154 -------------------------------------DVPV----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 154 -------------------------------------~~~~----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~ 191 (302)
+++- .. ......-.+..+-+||+|++.+|++||+|||+
T Consensus 110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPt 189 (330)
T PRK09473 110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 189 (330)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0000 00 00000111222234999999999999999998
Q ss_pred ---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|..++..+++.|.++.+..+.+++++|||+..+..
T Consensus 190 s~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~ 227 (330)
T PRK09473 190 TALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAG 227 (330)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 99999999999999988778899999999887654
No 178
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.84 E-value=7.6e-21 Score=157.39 Aligned_cols=131 Identities=10% Similarity=0.102 Sum_probs=97.4
Q ss_pred cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH----------------------------
Q psy2881 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---------------------------- 143 (302)
Q Consensus 92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---------------------------- 143 (302)
++++++.|++++|+||+|||||||++.|||+..|.+|.|.++|.|.......
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~ 97 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS 97 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC
Confidence 4667899999999999999999999999999999999999999986422111
Q ss_pred ----------HHHHHhcccCCCCeeecCCC--CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881 144 ----------EQLLILGKYNDVPVISEKKI--TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK 208 (302)
Q Consensus 144 ----------~ql~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~ 208 (302)
+++...+.+.|+.-+...-+ ..-.+..+-++||+++++..++++|||+ |+..+.+++..+.++++
T Consensus 98 P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~ 177 (231)
T COG3840 98 PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCD 177 (231)
T ss_pred cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHH
Confidence 11111111222111110000 1112233445999999999999999997 99999999999999999
Q ss_pred Hhchhhccccceee
Q psy2881 209 VIEKKIFELPYEIF 222 (302)
Q Consensus 209 ~~~~~i~~~~hd~~ 222 (302)
+.+.|++++||...
T Consensus 178 E~~~TllmVTH~~~ 191 (231)
T COG3840 178 ERKMTLLMVTHHPE 191 (231)
T ss_pred hhCCEEEEEeCCHH
Confidence 99999999999654
No 179
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=6e-21 Score=170.06 Aligned_cols=141 Identities=15% Similarity=0.178 Sum_probs=107.3
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH-------HhcccCCC-C---
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL-------ILGKYNDV-P--- 156 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~-------~~~~~~~~-~--- 156 (302)
-+.++||+++.|||+.|.|-+|||||||++++.+++.|+.|+|.+.|.|+.+....+-.. ...|.+++ |
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 468999999999999999999999999999999999999999999999987655432111 11111110 1
Q ss_pred --------eeecCCC-CCHHHHHHH--------------------------HHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 157 --------VISEKKI-TDPAAIAFN--------------------------AINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 157 --------~~~~~~~-~~~~~~~~~--------------------------~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
...+.-+ .+..+.+.+ -||||++.+|+++|+|||+ ||--+.+
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 0000000 011111111 1999999999999999997 9988999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+.++|.++.+..++|++++|||+..++.-+
T Consensus 203 mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 203 MQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 999999999999999999999999887755
No 180
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5e-21 Score=172.34 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=101.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC----Ce--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV----PV-- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~----~~-- 157 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...... ..+.+..+.... .+
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 100 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQE 100 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHH
Confidence 478999999999999999999999999999999999999999999998765322111 111111111100 00
Q ss_pred ------eec-----CCCC--------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 158 ------ISE-----KKIT--------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 158 ------~~~-----~~~~--------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
... .... ...+..+-.||+|++.+|+++|+|||+ |+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~ 180 (265)
T PRK10253 101 LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI 180 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 000 0000 001111122999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.+++.|.++.+..+.++++++||...+.+.+
T Consensus 181 ~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~ 211 (265)
T PRK10253 181 DLLELLSELNREKGYTLAAVLHDLNQACRYA 211 (265)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 9999999987655789999999988765543
No 181
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=8.2e-21 Score=173.05 Aligned_cols=141 Identities=10% Similarity=0.111 Sum_probs=100.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC----h-h---HHHHHHHhcccC-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR----A-A---AYEQLLILGKYN----- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~----~-~---~~~ql~~~~~~~----- 153 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.. . . ....+.+..+..
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 37899999999999999999999999999999999999999999998865421 0 0 000001111110
Q ss_pred ---------------------------------CCC--eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881 154 ---------------------------------DVP--VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS 194 (302)
Q Consensus 154 ---------------------------------~~~--~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~ 194 (302)
+++ +... .......+..+-+||+|++.+|+++|+|||+ |+.
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 184 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 000 0000 0001112222334999999999999999997 999
Q ss_pred chHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+...+++.|.++.+..+.+++++||+...+...
T Consensus 185 ~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~ 217 (289)
T PRK13645 185 GEEDFINLFERLNKEYKKRIIMVTHNMDQVLRI 217 (289)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 999999999998775678999999998765543
No 182
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.3e-21 Score=177.35 Aligned_cols=142 Identities=14% Similarity=0.141 Sum_probs=102.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh----hCCCeEEEecccCCChhHHHH-------HHHhcccCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK----KRKKSVLLAACDTFRAAAYEQ-------LLILGKYND- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~----~~~g~V~l~~~d~~~~~~~~q-------l~~~~~~~~- 154 (302)
.+++++||++.+|++++|+|+||||||||+++|+|+++ +++|+|.+.|.++......+. +.+..+...
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~ 100 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence 47899999999999999999999999999999999986 578999999987653322111 001111100
Q ss_pred --------------------------------------------CCee-----ecCCCCCHHHHHHHHHHHHHhCCCCeE
Q psy2881 155 --------------------------------------------VPVI-----SEKKITDPAAIAFNAINIAQKKNTDIV 185 (302)
Q Consensus 155 --------------------------------------------~~~~-----~~~~~~~~~~~~~~~la~al~~~~~ll 185 (302)
+.-. .......-.+..+-+||+|++.+|++|
T Consensus 101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ll 180 (330)
T PRK15093 101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEE
Confidence 0000 000000011122223999999999999
Q ss_pred EEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 186 IVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 186 llDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+|||+ |...+..+++.|+++.+..+.+++++|||+..+...+
T Consensus 181 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~ 226 (330)
T PRK15093 181 IADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWA 226 (330)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 999998 9999999999999998767899999999988876533
No 183
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.84 E-value=5.8e-21 Score=166.42 Aligned_cols=139 Identities=12% Similarity=0.139 Sum_probs=98.5
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-HHHHHhcccCCC-----------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-EQLLILGKYNDV----------- 155 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-~ql~~~~~~~~~----------- 155 (302)
.+.++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+.... ..+.+..+...+
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 35689999999999999999999999999999999999999999998765321100 000011111000
Q ss_pred -CeeecC---------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHH
Q psy2881 156 -PVISEK---------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELK 204 (302)
Q Consensus 156 -~~~~~~---------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~ 204 (302)
++.... ......+..+-+||+|++.+|+++|+|||+ |..+...+++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~ 172 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVK 172 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 000000 000111122223999999999999999997 9999999999999
Q ss_pred HHHHHhchhhccccceeehhhc
Q psy2881 205 KIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 205 ~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
++.+..+.++++++|+...+.+
T Consensus 173 ~~~~~~~~tii~vsh~~~~~~~ 194 (213)
T TIGR01277 173 QLCSERQRTLLMVTHHLSDARA 194 (213)
T ss_pred HHHHhcCCEEEEEeCCHHHHHh
Confidence 9976657899999998776543
No 184
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=8.5e-21 Score=167.55 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=98.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~--------- 154 (302)
++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.++|.++..... ...+.+..+...
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 57899999999999999999999999999999999999999999998866432110 011111111100
Q ss_pred CCee--------------------------------e--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 VPVI--------------------------------S--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 ~~~~--------------------------------~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.+. . ........+..+-.||+|++.+|+++|+|||+ |+.+..
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 175 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 0000 0 00011122333345999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
.+++.|.++.+ +.++++++|+...+.
T Consensus 176 ~l~~~l~~~~~--~~tii~~sh~~~~~~ 201 (234)
T cd03251 176 LVQAALERLMK--NRTTFVIAHRLSTIE 201 (234)
T ss_pred HHHHHHHHhcC--CCEEEEEecCHHHHh
Confidence 99999998863 678999999877653
No 185
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.84 E-value=8.9e-21 Score=169.42 Aligned_cols=142 Identities=10% Similarity=0.127 Sum_probs=100.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--------CC--C---hhHHHHH-------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--------TF--R---AAAYEQL------- 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--------~~--~---~~~~~ql------- 146 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.. .. . ....+.+
T Consensus 18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~ 97 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTK 97 (251)
T ss_pred eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccccc
Confidence 47899999999999999999999999999999999999999999876521 00 0 0111111
Q ss_pred ----HHhcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccc
Q psy2881 147 ----LILGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFEL 217 (302)
Q Consensus 147 ----~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~ 217 (302)
..+.+..++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|.++.+..+.+++++
T Consensus 98 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiiv 177 (251)
T PRK09544 98 KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMV 177 (251)
T ss_pred HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 0011111111000 00011223334445999999999999999997 99999999999999876557899999
Q ss_pred cceeehhhcCC
Q psy2881 218 PYEIFLIIDGN 228 (302)
Q Consensus 218 ~hd~~lvl~~~ 228 (302)
+|+...+...+
T Consensus 178 sH~~~~i~~~~ 188 (251)
T PRK09544 178 SHDLHLVMAKT 188 (251)
T ss_pred ecCHHHHHHhC
Confidence 99987765543
No 186
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.8e-21 Score=165.86 Aligned_cols=134 Identities=14% Similarity=0.035 Sum_probs=97.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEecccCCChhHHHHHHHhcccCCCC----eee-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP----VIS- 159 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~~- 159 (302)
++++++||++++|++++|+||||||||||++.|+|++ +|++|+|.+++.++. ......+.+..+...+. ...
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHH
Confidence 4789999999999999999999999999999999986 478999999987753 10011111111111100 000
Q ss_pred -----cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 160 -----EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 160 -----~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
........+..+-+||+|++.+|+++|+|||+ |..+...+++.|+++.+ .+.++++++|+..
T Consensus 100 l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~ 169 (192)
T cd03232 100 LRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCCh
Confidence 00012223334445999999999999999997 99999999999999875 4789999999876
No 187
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.84 E-value=4.7e-21 Score=168.12 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=98.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh------------------hHHHHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA------------------AAYEQLLI 148 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~------------------~~~~ql~~ 148 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+.... ...+.+..
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~ 93 (223)
T TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKV 93 (223)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHH
Confidence 578999999999999999999999999999999999999999999988653210 11111111
Q ss_pred hc--------------ccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHH
Q psy2881 149 LG--------------KYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKV 209 (302)
Q Consensus 149 ~~--------------~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~ 209 (302)
+. +..++.-... .......+..+-++|+|++.+|+++|+|||+ |..+...+++.|.++.+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~- 172 (223)
T TIGR03740 94 HTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE- 172 (223)
T ss_pred HHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-
Confidence 00 0011100000 0001112222334999999999999999997 99999999999999865
Q ss_pred hchhhccccceeehhhc
Q psy2881 210 IEKKIFELPYEIFLIID 226 (302)
Q Consensus 210 ~~~~i~~~~hd~~lvl~ 226 (302)
.+.+++++|||...+..
T Consensus 173 ~~~tiii~sH~~~~~~~ 189 (223)
T TIGR03740 173 QGITVILSSHILSEVQQ 189 (223)
T ss_pred CCCEEEEEcCCHHHHHH
Confidence 37889999998776544
No 188
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.84 E-value=1.5e-20 Score=168.27 Aligned_cols=141 Identities=13% Similarity=0.108 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----CCCeEEEecccCCChhHH-HHHHHhccc---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK----RKKSVLLAACDTFRAAAY-EQLLILGKY--------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----~~g~V~l~~~d~~~~~~~-~ql~~~~~~--------- 152 (302)
++++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.|.++...... ..+.+..+.
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 578999999999999999999999999999999999998 899999988664211000 000000010
Q ss_pred ----------------------------CCCCe----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 153 ----------------------------NDVPV----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 153 ----------------------------~~~~~----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
.++.- .. ........+..+-.||+|++.+|+++|+|||+ |..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~ 176 (254)
T PRK10418 97 TMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176 (254)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 11110 00 00011122333345999999999999999997 99899
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
..+.+.|+++.+..+.++++++|+...+...
T Consensus 177 ~~l~~~L~~~~~~~g~til~~sH~~~~~~~~ 207 (254)
T PRK10418 177 ARILDLLESIVQKRALGMLLVTHDMGVVARL 207 (254)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCHHHHHHh
Confidence 9999999998776678999999987765443
No 189
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.2e-21 Score=170.73 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=99.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC----C---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV----P--- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~----~--- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+.... ..+.+..+...+ .
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 95 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRE 95 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHH
Confidence 578999999999999999999999999999999999999999999998764321111 111111111110 0
Q ss_pred ---ee-------ecCCCCC--------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 157 ---VI-------SEKKITD--------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 157 ---~~-------~~~~~~~--------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+. ....... ..+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 175 (255)
T PRK11231 96 LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV 175 (255)
T ss_pred HHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 00 0000000 01111112999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.+.+.|.++.+. +.+++++||+...+...
T Consensus 176 ~l~~~l~~l~~~-~~tiii~tH~~~~~~~~ 204 (255)
T PRK11231 176 ELMRLMRELNTQ-GKTVVTVLHDLNQASRY 204 (255)
T ss_pred HHHHHHHHHHHC-CCEEEEEECCHHHHHHh
Confidence 999999998654 78999999998765543
No 190
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=9.5e-21 Score=171.45 Aligned_cols=141 Identities=18% Similarity=0.134 Sum_probs=101.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC--hh---HHHHHHHhcccCC---C--C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR--AA---AYEQLLILGKYND---V--P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~--~~---~~~ql~~~~~~~~---~--~ 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+... .. ....+.+..+... . .
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT 95 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence 47899999999999999999999999999999999999999999999977531 00 0111111111110 0 0
Q ss_pred e-----eec-CCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 157 V-----ISE-KKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 157 ~-----~~~-~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+ +.. ... ....+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 96 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 175 (275)
T PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175 (275)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 0 000 000 0011112223999999999999999997 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+++.|.++.+. +.++++++||...+...+
T Consensus 176 l~~~l~~l~~~-~~til~vtH~~~~~~~~~ 204 (275)
T PRK13639 176 IMKLLYDLNKE-GITIIISTHDVDLVPVYA 204 (275)
T ss_pred HHHHHHHHHHC-CCEEEEEecCHHHHHHhC
Confidence 99999999764 889999999988766543
No 191
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=6.6e-21 Score=166.15 Aligned_cols=135 Identities=17% Similarity=0.155 Sum_probs=95.5
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------HHHHHHHhcccCCCC----ee-
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------AYEQLLILGKYNDVP----VI- 158 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------~~~ql~~~~~~~~~~----~~- 158 (302)
|+||++++ ++++|+||||||||||++.|+|+++|++|+|.+.|.++.... ....+.+..+...+. +.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 89999999 999999999999999999999999999999999887643110 000111111111100 00
Q ss_pred -----ecC---------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 159 -----SEK---------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 159 -----~~~---------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
... ......+..+-.||+|++.+|+++|+|||+ |+.+...+.+.|
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 174 (214)
T cd03297 95 NLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL 174 (214)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 000 000111112223999999999999999998 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhc
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.++++..+.+++++|||...+..
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 175 KQIKKNLNIPVIFVTHDLSEAEY 197 (214)
T ss_pred HHHHHHcCcEEEEEecCHHHHHH
Confidence 99977657899999998776543
No 192
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.2e-20 Score=167.02 Aligned_cols=139 Identities=19% Similarity=0.230 Sum_probs=100.6
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHHH
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQLL 147 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql~ 147 (302)
+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... .+.+.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 6889999999999999999999999999999999999999999999876542111 11111
Q ss_pred H------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHH
Q psy2881 148 I------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELK 204 (302)
Q Consensus 148 ~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~ 204 (302)
. +.+..++.-... .......+..+-+||+|++.+|+++++|||+ |..+...+.+.|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 173 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence 0 000111100000 0001122233334999999999999999997 9999999999999
Q ss_pred HHHHHhchhhccccceeehhhc
Q psy2881 205 KIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 205 ~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
++....+.++++++|+...+.+
T Consensus 174 ~~~~~~~~tili~tH~~~~~~~ 195 (235)
T cd03299 174 KIRKEFGVTVLHVTHDFEEAWA 195 (235)
T ss_pred HHHHhcCCEEEEEecCHHHHHH
Confidence 9876557899999998776544
No 193
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.2e-20 Score=156.65 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=102.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDP 166 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~ 166 (302)
+++++++|++.+|++++|+||||+||||+++.|+|.++|..|+|.+.+.+....... ++ . ..+.+..+ ...
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~-~~---~--~~i~~~~q---lS~ 83 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLE-EL---R--RRIGYVPQ---LSG 83 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHH-HH---H--hceEEEee---CCH
Confidence 478899999999999999999999999999999999999999999998765432111 11 1 11222222 233
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 167 AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 167 ~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+..+-.++++++.+|+++++|||+ |..+...+.+.+.++.+. +.++++++|+...+..
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~ 145 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 3455566999999999999999997 888899999999988764 6789999998776544
No 194
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.9e-21 Score=172.94 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=100.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC---CeEEEecccCCChhHH---HHHHHhcccCC------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK---KSVLLAACDTFRAAAY---EQLLILGKYND------ 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~---g~V~l~~~d~~~~~~~---~ql~~~~~~~~------ 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++ |+|.+.|.++...... .++.+..+...
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 47899999999999999999999999999999999999986 8999999876432211 11111111110
Q ss_pred -----CCeeecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 -----VPVISEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 -----~~~~~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.+........ ..+..+-+||+|++.+|+++|+|||+ |..+..
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~ 180 (282)
T PRK13640 101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180 (282)
T ss_pred CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 00000000001 11111223999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
.+++.|.++.+..+.+++++||+...+.
T Consensus 181 ~l~~~l~~l~~~~g~tvli~tH~~~~~~ 208 (282)
T PRK13640 181 QILKLIRKLKKKNNLTVISITHDIDEAN 208 (282)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 9999999997766889999999877653
No 195
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=5.5e-21 Score=173.17 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC--C---C--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND--V---P-- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~--~---~-- 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+... + .
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 3789999999999999999999999999999999999999999999987764321111 0111111100 0 0
Q ss_pred ----eeecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 157 ----VISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 157 ----~~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
+...... ....+..+-+||+|++.+|+++|+|||+ |+.+...++
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~ 180 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0000000 0011112223999999999999999997 999999999
Q ss_pred HHHHHHHHHhchhhccccceeehhh
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
+.|.++.+..+.+++++||+...+.
T Consensus 181 ~~l~~l~~~~g~tiil~sH~~~~~~ 205 (277)
T PRK13642 181 RVIHEIKEKYQLTVLSITHDLDEAA 205 (277)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 9999998766889999999988764
No 196
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.84 E-value=7.8e-21 Score=168.15 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=97.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~--------- 154 (302)
++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.+....... ..+.+..+...
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 95 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDN 95 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHH
Confidence 478999999999999999999999999999999999999999999998764321110 00000011000
Q ss_pred CCeee----------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 VPVIS----------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 ~~~~~----------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.+.. ........+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 175 (237)
T cd03252 96 IALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175 (237)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 00000 00001112223334999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|.++.+ +.++++++||...+
T Consensus 176 ~l~~~l~~~~~--~~tiii~sH~~~~~ 200 (237)
T cd03252 176 AIMRNMHDICA--GRTVIIIAHRLSTV 200 (237)
T ss_pred HHHHHHHHhcC--CCEEEEEeCCHHHH
Confidence 99999999863 78999999987664
No 197
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.5e-20 Score=162.62 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=94.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh---hCCCeEEEecccCCChhH--HHHHHHhcccCCC----C-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK---KRKKSVLLAACDTFRAAA--YEQLLILGKYNDV----P- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~---~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~----~- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.|.++..... ...+.+..+.... .
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 100 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTV 100 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcH
Confidence 47899999999999999999999999999999999999 889999999987643211 0011111111000 0
Q ss_pred -----ee-----e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccc
Q psy2881 157 -----VI-----S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 157 -----~~-----~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
+. . ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|.++.+..+.++++++|
T Consensus 101 ~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 101 RETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred HHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 00 0 00011223344445999999999999999997 9999999999999987654555555444
No 198
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=8e-21 Score=170.74 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=107.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-h----CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-K----RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK 161 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~----~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~ 161 (302)
.+++|+||++.+||+++|||.+|||||||...|.|+++ + .+|+|.+.|.|+.+....+..+..+.... ++++.
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~--mIfQ~ 96 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIA--MIFQD 96 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEE--EEEcC
Confidence 47899999999999999999999999999999999997 3 46899999998876554422122222211 11110
Q ss_pred ----------------------CCC----CHHHHH-----------------------------HHHHHHHHhCCCCeEE
Q psy2881 162 ----------------------KIT----DPAAIA-----------------------------FNAINIAQKKNTDIVI 186 (302)
Q Consensus 162 ----------------------~~~----~~~~~~-----------------------------~~~la~al~~~~~lll 186 (302)
... +....+ +-.||.|++.+|++||
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI 176 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI 176 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence 000 000011 1129999999999999
Q ss_pred EcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 187 VDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 187 lDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.|||| |...+.+++++|+++.++.+.+++++|||+.+|...+
T Consensus 177 ADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 177 ADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIA 221 (316)
T ss_pred eCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 99998 9999999999999999988999999999999887765
No 199
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=1.5e-20 Score=166.88 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=98.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCCC----Ce-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYNDV----PV- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~----~~- 157 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.+.......+ .+.+..+.... .+
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF 95 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence 4789999999999999999999999999999999999999999999997654322110 01111111000 00
Q ss_pred -----eec-----------CC--------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 158 -----ISE-----------KK--------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 158 -----~~~-----------~~--------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d 192 (302)
... .. .....+..+-+||+|++.+|+++|+|||+ |
T Consensus 96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD 175 (242)
T TIGR03411 96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT 175 (242)
T ss_pred HHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 000 00 00001111122999999999999999997 9
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+...+++.|+++.+ +.+++++||+...+..
T Consensus 176 ~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~ 207 (242)
T TIGR03411 176 DEETEKTAELLKSLAG--KHSVVVVEHDMEFVRS 207 (242)
T ss_pred HHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHH
Confidence 9999999999999865 5799999998776543
No 200
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.83 E-value=5.7e-21 Score=171.19 Aligned_cols=139 Identities=13% Similarity=0.096 Sum_probs=99.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh--------------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-------------------------- 140 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-------------------------- 140 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 98 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence 478999999999999999999999999999999999999999999998754210
Q ss_pred ---------hHHHHHHH-------------------hcccCCCCeee---cCCCCCHHHHHHHHHHHHHhCCCCeEEEcC
Q psy2881 141 ---------AAYEQLLI-------------------LGKYNDVPVIS---EKKITDPAAIAFNAINIAQKKNTDIVIVDT 189 (302)
Q Consensus 141 ---------~~~~ql~~-------------------~~~~~~~~~~~---~~~~~~~~~~~~~~la~al~~~~~llllDE 189 (302)
...+.+.. +.+..++.-.. ........+..+-+||+|++.+|+++|+||
T Consensus 99 q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 178 (257)
T PRK10619 99 QHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDE 178 (257)
T ss_pred cCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01111110 00001110000 000011122233349999999999999999
Q ss_pred CC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 190 SG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 190 P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+ |+.+...+++.|+++.+ .+.+++++|||...+..
T Consensus 179 Pt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~ 217 (257)
T PRK10619 179 PTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARH 217 (257)
T ss_pred CcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence 97 99999999999999875 48899999998776543
No 201
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=8.6e-21 Score=167.46 Aligned_cols=136 Identities=12% Similarity=0.112 Sum_probs=96.6
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-HHHHHhcccCC------------CCe
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-EQLLILGKYND------------VPV 157 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-~ql~~~~~~~~------------~~~ 157 (302)
++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.++...... ..+.+..+... .++
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 78999999999999999999999999999999999999999998765321110 01111111100 000
Q ss_pred eecCC-C--------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881 158 ISEKK-I--------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK 207 (302)
Q Consensus 158 ~~~~~-~--------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~ 207 (302)
..... . ....+..+-.||+|++.+|+++|+|||+ |..+...+.+.|.++.
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~ 176 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 00000 0 0001111122899999999999999997 9999999999999987
Q ss_pred HHhchhhccccceeehhhc
Q psy2881 208 KVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 208 ~~~~~~i~~~~hd~~lvl~ 226 (302)
+..+.++++++||...+..
T Consensus 177 ~~~~~tiii~sH~~~~~~~ 195 (232)
T PRK10771 177 QERQLTLLMVSHSLEDAAR 195 (232)
T ss_pred HhcCCEEEEEECCHHHHHH
Confidence 7667899999998876544
No 202
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.83 E-value=3.8e-21 Score=173.42 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=101.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhccc--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKY-------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~-------- 152 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+.+..+.
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 105 (268)
T PRK10419 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR 105 (268)
T ss_pred eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence 478999999999999999999999999999999999999999999998765322110 000001111
Q ss_pred --------------------------------CCCC--eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881 153 --------------------------------NDVP--VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS 194 (302)
Q Consensus 153 --------------------------------~~~~--~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~ 194 (302)
.++. ... ........+..+-+||+|++.+|+++|+|||+ |..
T Consensus 106 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~ 185 (268)
T PRK10419 106 KTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV 185 (268)
T ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 0010 000 00001112223334999999999999999997 888
Q ss_pred chHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+...+.+.|.++.+..+.++++++|+...+...
T Consensus 186 ~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~ 218 (268)
T PRK10419 186 LQAGVIRLLKKLQQQFGTACLFITHDLRLVERF 218 (268)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHh
Confidence 899999999999776678999999997765543
No 203
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.2e-21 Score=179.49 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=98.8
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh------hH-HHHHHHhccc-----------
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA------AA-YEQLLILGKY----------- 152 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~------~~-~~ql~~~~~~----------- 152 (302)
++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... .. ...+.+..+.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 79999999999999999999999999999999999999999988764321 00 0001111111
Q ss_pred --------------------CCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881 153 --------------------NDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK 207 (302)
Q Consensus 153 --------------------~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~ 207 (302)
.++.-... .......+..+-+||||++.+|+++|+|||+ |+.....+++.|+++.
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~ 175 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA 175 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 11100000 0001112223334999999999999999997 9999999999999998
Q ss_pred HHhchhhccccceeehhhcC
Q psy2881 208 KVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 208 ~~~~~~i~~~~hd~~lvl~~ 227 (302)
+..+.+++++|||...+...
T Consensus 176 ~~~g~tii~vTHd~~~~~~~ 195 (352)
T PRK11144 176 REINIPILYVSHSLDEILRL 195 (352)
T ss_pred HhcCCeEEEEecCHHHHHHh
Confidence 76688999999998766553
No 204
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.83 E-value=1.6e-20 Score=166.25 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=97.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~--------- 154 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+.+..+...
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHH
Confidence 478999999999999999999999999999999999999999999998765321110 00000000000
Q ss_pred CCee--e--------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 VPVI--S--------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 ~~~~--~--------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.+. . ........+..+-.||+|++.+|+++|+|||+ |+.+..
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~ 176 (238)
T cd03249 97 IRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEK 176 (238)
T ss_pred hhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 0000 0 00011122233334999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|+++. .+.++++++|+...+
T Consensus 177 ~l~~~l~~~~--~g~~vi~~sh~~~~~ 201 (238)
T cd03249 177 LVQEALDRAM--KGRTTIVIAHRLSTI 201 (238)
T ss_pred HHHHHHHHhc--CCCEEEEEeCCHHHH
Confidence 9999999885 478899999987654
No 205
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.83 E-value=9.1e-21 Score=170.31 Aligned_cols=142 Identities=13% Similarity=0.086 Sum_probs=100.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCChh-----H---HHHHHHhcccCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRAA-----A---YEQLLILGKYNDV 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~~-----~---~~ql~~~~~~~~~ 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++.... . ...+.+..+....
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 4789999999999999999999999999999999999876 499999997764211 0 0111111221110
Q ss_pred ----Ce-----eecC------------CCCCHHHHH--------------------------HHHHHHHHhCCCCeEEEc
Q psy2881 156 ----PV-----ISEK------------KITDPAAIA--------------------------FNAINIAQKKNTDIVIVD 188 (302)
Q Consensus 156 ----~~-----~~~~------------~~~~~~~~~--------------------------~~~la~al~~~~~llllD 188 (302)
.+ +... ........+ +-+||+|++.+|++||+|
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 177 (262)
T PRK09984 98 VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD 177 (262)
T ss_pred ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEec
Confidence 00 0000 000000111 112899999999999999
Q ss_pred CCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 189 TSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 189 EP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
||+ |......+++.|+++.+..+.++++++||...+...+
T Consensus 178 EPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~ 220 (262)
T PRK09984 178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYC 220 (262)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 997 9999999999999998766789999999987655433
No 206
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.2e-20 Score=166.75 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=98.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q 145 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+.
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 94 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYN 94 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHH
Confidence 3789999999999999999999999999999999999999999999886643211 0011
Q ss_pred HHHhccc------------CCCC-e---e---------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 146 LLILGKY------------NDVP-V---I---------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 146 l~~~~~~------------~~~~-~---~---------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+...... .++. . . .........+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~ 174 (236)
T cd03253 95 IRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174 (236)
T ss_pred HhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 1100000 0000 0 0 000011223334445999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|.++.+ +.++++++|+...+
T Consensus 175 ~l~~~l~~~~~--~~tiii~sh~~~~~ 199 (236)
T cd03253 175 EIQAALRDVSK--GRTTIVIAHRLSTI 199 (236)
T ss_pred HHHHHHHHhcC--CCEEEEEcCCHHHH
Confidence 99999998864 78999999987664
No 207
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.83 E-value=8.1e-21 Score=168.24 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=99.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql 146 (302)
++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.++..... .+.+
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 93 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI 93 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence 57899999999999999999999999999999999999999999998876532111 1111
Q ss_pred HHhc------------------ccCCCCee-ec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LILG------------------KYNDVPVI-SE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~~~------------------~~~~~~~~-~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.... ...++.-. .. .......+..+-+|+++++.+|+++|+|||+ |..+...+++.|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l 173 (237)
T TIGR00968 94 AFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173 (237)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 1000 00000000 00 0001111222223999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhc
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.++.+..+.+++++||+...+..
T Consensus 174 ~~~~~~~~~tvli~sH~~~~~~~ 196 (237)
T TIGR00968 174 RKLHDEVHVTTVFVTHDQEEAME 196 (237)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHh
Confidence 99876557899999998776544
No 208
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.83 E-value=1.4e-20 Score=164.79 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=98.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhcccCCC----C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKYNDV----P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~~~~----~ 156 (302)
.+++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.+....... ..+.+..+...+ .
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence 478999999999999999999999999999999999999999999998765321110 011111111000 0
Q ss_pred e------eec-CCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 157 V------ISE-KKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 157 ~------~~~-~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
. ... ... ....+..+-+||++++.+|+++|+|||+ |..+..
T Consensus 99 ~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~ 178 (220)
T TIGR02982 99 ARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR 178 (220)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 0 000 000 0011111223999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceee
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
.+++.|+++.+..+.++++++|+..
T Consensus 179 ~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 179 DVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 9999999998766889999999865
No 209
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.83 E-value=9.4e-21 Score=165.74 Aligned_cols=136 Identities=17% Similarity=0.191 Sum_probs=97.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~---------- 153 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ...+.+..+..
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 97 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDN 97 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHH
Confidence 47899999999999999999999999999999999999999999998865421110 00000001100
Q ss_pred --------------------CCCe-eec------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 154 --------------------DVPV-ISE------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 154 --------------------~~~~-~~~------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
++.- ... .......+..+-.||+|++.+|+++|+|||+ |+.+..
T Consensus 98 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 177 (220)
T cd03245 98 ITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177 (220)
T ss_pred hhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 0000 000 0011122333445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|+++.+ +.+++++|||...+
T Consensus 178 ~l~~~l~~~~~--~~tii~~sH~~~~~ 202 (220)
T cd03245 178 RLKERLRQLLG--DKTLIIITHRPSLL 202 (220)
T ss_pred HHHHHHHHhcC--CCEEEEEeCCHHHH
Confidence 99999999865 37899999987653
No 210
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=1.8e-20 Score=158.34 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=96.6
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC----ChhHHHHHHHhcccCCCCee---
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF----RAAAYEQLLILGKYNDVPVI--- 158 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~----~~~~~~ql~~~~~~~~~~~~--- 158 (302)
.++++++||++++|++++|+||||||||||++.+. ++.|+|.+.+.... +.....|.. +.+.+++...
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q~~-~l~~~~L~~~~~~ 82 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQLQ-FLIDVGLGYLTLG 82 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhHHH-HHHHcCCCccccC
Confidence 35789999999999999999999999999999885 36899988765321 111222322 2233343211
Q ss_pred ecCCCCCHHHHHHHHHHHHHhCC--CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 159 SEKKITDPAAIAFNAINIAQKKN--TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~la~al~~~--~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.........+..+-++++|++.+ |+++|+|||+ |......+.+.|+++.+ .+.++++++|+...
T Consensus 83 ~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~ 151 (176)
T cd03238 83 QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDV 151 (176)
T ss_pred CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH
Confidence 11122234455566799999999 9999999997 88889999999998865 58899999998654
No 211
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=7.4e-21 Score=186.22 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=101.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYN--------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~--------- 153 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+. +.+..+..
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 104 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVK 104 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHH
Confidence 47899999999999999999999999999999999999999999999876543221110 00111111
Q ss_pred ------------------------CCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHH
Q psy2881 154 ------------------------DVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELK 204 (302)
Q Consensus 154 ------------------------~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~ 204 (302)
++.-... .......+..+-+||+|++.+|+++|+|||+ |+.+...+++.|+
T Consensus 105 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 184 (510)
T PRK15439 105 ENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIR 184 (510)
T ss_pred HHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 1100000 0000111222334999999999999999998 9999999999999
Q ss_pred HHHHHhchhhccccceeehhhcC
Q psy2881 205 KIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 205 ~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
++++. +.+++++|||...+...
T Consensus 185 ~~~~~-g~tiiivtHd~~~~~~~ 206 (510)
T PRK15439 185 ELLAQ-GVGIVFISHKLPEIRQL 206 (510)
T ss_pred HHHHC-CCEEEEEeCCHHHHHHh
Confidence 98764 78999999998776553
No 212
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.83 E-value=1e-20 Score=169.41 Aligned_cols=141 Identities=12% Similarity=0.101 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCC-------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVP------- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~------- 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+.++.+.....
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD 94 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence 478999999999999999999999999999999999999999999998775432211 1111222221100
Q ss_pred ---ee--ec--CC--C-CCH--------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 157 ---VI--SE--KK--I-TDP--------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 157 ---~~--~~--~~--~-~~~--------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+. .. .. . ... .+..+-+||+|++.+|+++|+|||+ |..+..
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 174 (256)
T TIGR03873 95 VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL 174 (256)
T ss_pred HHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 00 00 00 0 000 0111112899999999999999997 899999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.+++.|+++.+. +.++++++|+...+...+
T Consensus 175 ~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~ 204 (256)
T TIGR03873 175 ETLALVRELAAT-GVTVVAALHDLNLAASYC 204 (256)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCHHHHHHhC
Confidence 999999998753 789999999988765433
No 213
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1e-20 Score=160.40 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=97.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCChh--HH---HHHHHhcccCC-C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFRAA--AY---EQLLILGKYND-V 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~~~--~~---~ql~~~~~~~~-~ 155 (302)
.++++||+.++++++++|+||+||||||+++++..+.... .|+|.+.|.+++... .. .++....|..+ .
T Consensus 21 ~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPF 100 (253)
T COG1117 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF 100 (253)
T ss_pred hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCC
Confidence 4789999999999999999999999999999999988754 499999999987542 11 11221222211 0
Q ss_pred Ce--------eecCCC---CCHHHHH------------------------------HHHHHHHHhCCCCeEEEcCCC---
Q psy2881 156 PV--------ISEKKI---TDPAAIA------------------------------FNAINIAQKKNTDIVIVDTSG--- 191 (302)
Q Consensus 156 ~~--------~~~~~~---~~~~~~~------------------------------~~~la~al~~~~~llllDEP~--- 191 (302)
|. -....+ .+..+.+ +-.||||++.+|++||+|||+
T Consensus 101 p~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSAL 180 (253)
T COG1117 101 PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180 (253)
T ss_pred CchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCccccc
Confidence 10 000000 0000111 112999999999999999998
Q ss_pred CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
||-+...+-+.+.++++ .-|++++||++..+.
T Consensus 181 DPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAa 212 (253)
T COG1117 181 DPISTLKIEELITELKK--KYTIVIVTHNMQQAA 212 (253)
T ss_pred CchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHH
Confidence 99999888888888875 468999999766543
No 214
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.83 E-value=1.5e-20 Score=166.88 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=100.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEecccCCChhHHHH----HHHhccc--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAACDTFRAAAYEQ----LLILGKY-------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~-------- 152 (302)
++++++||++++|++++|+||||||||||+++|+|++ +|++|+|.+.|.++.+...... +.+..+.
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS 93 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence 4789999999999999999999999999999999995 6899999999876532111000 0000000
Q ss_pred ------------------------------------CCCC--eeecCC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881 153 ------------------------------------NDVP--VISEKK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG- 191 (302)
Q Consensus 153 ------------------------------------~~~~--~~~~~~--~~~~~~~~~~~la~al~~~~~llllDEP~- 191 (302)
.+++ ...... .....+..+-+||+|++.+|+++|+|||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 173 (243)
T TIGR01978 94 NLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173 (243)
T ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 1111 000000 12223334445999999999999999998
Q ss_pred --CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+++.|+++.+ .+.++++++||...+..
T Consensus 174 ~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 174 GLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNY 209 (243)
T ss_pred cCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHh
Confidence 99999999999999865 47899999998776543
No 215
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.83 E-value=6.3e-19 Score=159.92 Aligned_cols=172 Identities=30% Similarity=0.340 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcC--cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy2881 7 TRLKESLSKTACNLKSLIVNK--KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNL 84 (302)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 84 (302)
+.+.+.+..+++.+..++..- ..-++.++++++.|++.||+.+++++|++.+.+. .+.+.++.++.+.|.+.
T Consensus 107 ~~~~~e~~~lk~~l~~~~~~~~~~~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~------~~~~~~~~~~~~~l~~~ 180 (282)
T TIGR03499 107 EELRKELEALRELLERLLAGLAWLQRDPEGAKLLERLLRAGVSPELARELLEKLPER------ADAEDAWRWLREALEKM 180 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhcc------CCHHHHHHHHHHHHHHH
Confidence 455566666655555554421 1234678899999999999999999999988742 36677888999999999
Q ss_pred hhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-C-CeEEEecccCCChhHHHHHHHhcccCCCCeeecCC
Q psy2881 85 LKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-K-KSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKK 162 (302)
Q Consensus 85 l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~-g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~ 162 (302)
+.......++ ..+|.+++|+||+|||||||+.+|+..+... + .+|.+.+.|++|.++.+|+..|++..++++.....
T Consensus 181 l~~~~~~~~~-~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~ 259 (282)
T TIGR03499 181 LPVKPEEDEI-LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARD 259 (282)
T ss_pred hccCCccccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCC
Confidence 8632222233 3568899999999999999999999999865 4 69999999999999999999999999988865432
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881 163 ITDPAAIAFNAINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 163 ~~~~~~~~~~~la~al~~~~~llllDEP~ 191 (302)
+. ...+.+.+ ..++|+||+|+||
T Consensus 260 ---~~-~l~~~l~~--~~~~d~vliDt~G 282 (282)
T TIGR03499 260 ---PK-ELRKALDR--LRDKDLILIDTAG 282 (282)
T ss_pred ---HH-HHHHHHHH--ccCCCEEEEeCCC
Confidence 22 23344443 3579999999997
No 216
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=1.4e-20 Score=161.80 Aligned_cols=136 Identities=14% Similarity=0.131 Sum_probs=95.4
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh------------------HHHHHHHhc--
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA------------------AYEQLLILG-- 150 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~------------------~~~ql~~~~-- 150 (302)
++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+..+.. ..+.+....
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~ 97 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEI 97 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHh
Confidence 499999999999999999999999999999999999999999987653211 011111000
Q ss_pred -----------ccCCCCe-ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhh
Q psy2881 151 -----------KYNDVPV-IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKI 214 (302)
Q Consensus 151 -----------~~~~~~~-~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i 214 (302)
+..++.- .. ........+..+-++++|++.+|+++|+|||+ |+.+...+.+.|.+..+ .+.++
T Consensus 98 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~ti 176 (195)
T PRK13541 98 YNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIV 176 (195)
T ss_pred cccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 0001100 00 00001112223334999999999999999997 88888889898876543 47899
Q ss_pred ccccceeehhhcC
Q psy2881 215 FELPYEIFLIIDG 227 (302)
Q Consensus 215 ~~~~hd~~lvl~~ 227 (302)
++++|+...+-.+
T Consensus 177 ii~sh~~~~i~~~ 189 (195)
T PRK13541 177 LLSSHLESSIKSA 189 (195)
T ss_pred EEEeCCccccchh
Confidence 9999998776543
No 217
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.6e-20 Score=165.23 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=97.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~--------- 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ...+.+..+...
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 96 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN 96 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHH
Confidence 47899999999999999999999999999999999999999999998865431100 000000000000
Q ss_pred CCeee----------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 VPVIS----------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 ~~~~~----------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.+.. ........+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~ 176 (229)
T cd03254 97 IRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK 176 (229)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 00000 00111223333445999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|.++. . +.+++++||+...+
T Consensus 177 ~l~~~l~~~~-~-~~tii~~sh~~~~~ 201 (229)
T cd03254 177 LIQEALEKLM-K-GRTSIIIAHRLSTI 201 (229)
T ss_pred HHHHHHHHhc-C-CCEEEEEecCHHHH
Confidence 9999999885 3 78999999987654
No 218
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.83 E-value=7e-21 Score=178.16 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=98.4
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh------H-HHHHHHhcccCCC----Ce--
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA------A-YEQLLILGKYNDV----PV-- 157 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~------~-~~ql~~~~~~~~~----~~-- 157 (302)
++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... . ...+.+..+...+ .+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 799999999999999999999999999999999999999999887653210 0 0011111111100 00
Q ss_pred ---e-ecC-C--------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 158 ---I-SEK-K--------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 158 ---~-~~~-~--------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
+ ... . .....+..+-+||+|++.+|+++|+|||+ |+.+...+++.|
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 174 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 0 000 0 00111222223999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhcC
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+++.+..+.+++++|||...+...
T Consensus 175 ~~l~~~~g~tiiivtH~~~~~~~~ 198 (354)
T TIGR02142 175 ERLHAEFGIPILYVSHSLQEVLRL 198 (354)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHh
Confidence 999876688999999998876553
No 219
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.83 E-value=2.4e-20 Score=163.31 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=97.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhccc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKY----------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~----------- 152 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+.
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en 97 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN 97 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHH
Confidence 4789999999999999999999999999999999999999999999887653211100 00000000
Q ss_pred ------------------CCCC-ee------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 153 ------------------NDVP-VI------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 153 ------------------~~~~-~~------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
.++. .. .........+..+-+|++|++.+|+++|+|||+ |+.+...
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~ 177 (221)
T cd03244 98 LDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177 (221)
T ss_pred hCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence 0000 00 000111122333345999999999999999997 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhh
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
+.+.|+++.+ +.++++++|+...+.
T Consensus 178 l~~~l~~~~~--~~tii~~sh~~~~~~ 202 (221)
T cd03244 178 IQKTIREAFK--DCTVLTIAHRLDTII 202 (221)
T ss_pred HHHHHHHhcC--CCEEEEEeCCHHHHh
Confidence 9999998853 578999999876653
No 220
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.83 E-value=3.1e-20 Score=165.39 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=98.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCCh-----hHHHHHHHhccc----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFRA-----AAYEQLLILGKY---- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~~-----~~~~ql~~~~~~---- 152 (302)
++++++||++++|++++|+||||||||||++.|+|+++|+ +|+|.++|.++... .....+.+..+.
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 4789999999999999999999999999999999999988 99999988765321 000111111111
Q ss_pred ---------------------------------CCCC-----eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 153 ---------------------------------NDVP-----VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 153 ---------------------------------~~~~-----~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
.++. .... .......+..+-+||+|++.+|+++|+|||+
T Consensus 95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 174 (247)
T TIGR00972 95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174 (247)
T ss_pred CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0110 0000 0001122333334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+++.|+++.+ +.++++++|+...+..
T Consensus 175 LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~ 208 (247)
T TIGR00972 175 LDPIATGKIEELIQELKK--KYTIVIVTHNMQQAAR 208 (247)
T ss_pred CCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHH
Confidence 99999999999999875 3789999998776543
No 221
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.83 E-value=2.4e-20 Score=163.89 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=97.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---------------------HHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---------------------YEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---------------------~~q 145 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... .+.
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~n 107 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN 107 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHH
Confidence 47899999999999999999999999999999999999999999999876421100 000
Q ss_pred HHHhc---------------------ccC--CCCee-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 146 LLILG---------------------KYN--DVPVI-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 146 l~~~~---------------------~~~--~~~~~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.... ..+ ++.-. . ........+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 187 (226)
T cd03248 108 IAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187 (226)
T ss_pred hccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 00000 000 00000 0 00001122333334999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
.+.+.|+++.+ +.+++++|||...+.
T Consensus 188 ~l~~~l~~~~~--~~tii~~sh~~~~~~ 213 (226)
T cd03248 188 QVQQALYDWPE--RRTVLVIAHRLSTVE 213 (226)
T ss_pred HHHHHHHHHcC--CCEEEEEECCHHHHH
Confidence 99999998864 578999999987653
No 222
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.6e-20 Score=165.23 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=97.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChhH-------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAAA------------------- 142 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~~------------------- 142 (302)
++++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++.+...
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 478999999999999999999999999999999999874 69999999876532111
Q ss_pred ---HHHHHHhc--------------------ccCCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 143 ---YEQLLILG--------------------KYNDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 143 ---~~ql~~~~--------------------~~~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
.+.+.... +..++.- . .........+..+-++|+|++.+|+++|+|||+
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~ 176 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTAN 176 (250)
T ss_pred CcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 11111000 0001000 0 000001112233344999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+.+.|.++.+ +.++++++|+...+..
T Consensus 177 LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~ 210 (250)
T PRK14247 177 LDPENTAKIESLFLELKK--DMTIVLVTHFPQQAAR 210 (250)
T ss_pred CCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH
Confidence 99999999999999853 6889999998776543
No 223
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.82 E-value=1.6e-20 Score=183.59 Aligned_cols=141 Identities=15% Similarity=0.145 Sum_probs=101.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYND-------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~-------- 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....... .+.+..+...
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIA 97 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHH
Confidence 4789999999999999999999999999999999999999999999987753221111 0111111100
Q ss_pred --CCe--eec--CCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 155 --VPV--ISE--KKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 155 --~~~--~~~--~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
+.+ ... ....+ ..+..+-+||+|++.+|+++|+|||+ |+.+.
T Consensus 98 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 177 (501)
T PRK10762 98 ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177 (501)
T ss_pred HHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHH
Confidence 000 000 00000 11112223999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
..+++.|.++.+. +.+++++|||...+...+
T Consensus 178 ~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~ 208 (501)
T PRK10762 178 ESLFRVIRELKSQ-GRGIVYISHRLKEIFEIC 208 (501)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhC
Confidence 9999999999654 789999999987765543
No 224
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.4e-20 Score=164.42 Aligned_cols=138 Identities=11% Similarity=0.057 Sum_probs=98.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh---hCCCeEEEecccCCChhH---------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK---KRKKSVLLAACDTFRAAA--------------------- 142 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~---~~~g~V~l~~~d~~~~~~--------------------- 142 (302)
++++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.|.++.....
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv 95 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSI 95 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccH
Confidence 57899999999999999999999999999999999974 689999999877532110
Q ss_pred HHHHHH--------------------hcccCCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 143 YEQLLI--------------------LGKYNDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 143 ~~ql~~--------------------~~~~~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
.+.+.. +.+..++.- . .........+..+-++|+|++.+|+++|+|||+ |+
T Consensus 96 ~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~ 175 (246)
T PRK14269 96 YENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP 175 (246)
T ss_pred HHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 111100 000111100 0 000011222333344999999999999999997 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+...+++.|.++.+ +.++++++|+...+..
T Consensus 176 ~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~ 206 (246)
T PRK14269 176 ISSGVIEELLKELSH--NLSMIMVTHNMQQGKR 206 (246)
T ss_pred HHHHHHHHHHHHHhC--CCEEEEEecCHHHHHh
Confidence 999999999998853 7899999998776543
No 225
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.2e-20 Score=160.64 Aligned_cols=140 Identities=17% Similarity=0.143 Sum_probs=99.4
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH----HHHHHH--------hcccC
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA----YEQLLI--------LGKYN 153 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~----~~ql~~--------~~~~~ 153 (302)
+++++|+||++++|+-++|+||||||||||++.++|.+.|++|.+.+.|....+... ++.+.. +....
T Consensus 44 k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~ 123 (257)
T COG1119 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE 123 (257)
T ss_pred EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccccc
Confidence 468999999999999999999999999999999999999999999999876432221 111111 11100
Q ss_pred C------------CCeeecCCCCCHH----------------------------HHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 154 D------------VPVISEKKITDPA----------------------------AIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 154 ~------------~~~~~~~~~~~~~----------------------------~~~~~~la~al~~~~~llllDEP~-- 191 (302)
. +.++.. ..+.. +..+-.||||++.+|+++|||||+
T Consensus 124 ~v~dvVlSg~~~siG~y~~--~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~G 201 (257)
T COG1119 124 TVRDVVLSGFFASIGIYQE--DLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201 (257)
T ss_pred ccceeeeeccccccccccc--CCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence 0 011110 11111 111112999999999999999996
Q ss_pred -CccchHHHHHHHHHHHHHh-chhhccccceeehhhcC
Q psy2881 192 -RLSTQSHLMRELKKIKKVI-EKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~-~~~i~~~~hd~~lvl~~ 227 (302)
|..++..+.+.|.++.... +++++++||....+..+
T Consensus 202 LDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~ 239 (257)
T COG1119 202 LDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPC 239 (257)
T ss_pred CChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccc
Confidence 9999999999999987642 56788999976665444
No 226
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.6e-20 Score=164.83 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=97.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCC--ChhH---HHHHHHhcccC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTF--RAAA---YEQLLILGKYN--- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~--~~~~---~~ql~~~~~~~--- 153 (302)
++++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.|.++. +... ...+.+..+..
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 578999999999999999999999999999999999987 4899999987653 1100 00111111110
Q ss_pred ------------------------------------CCCe-----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881 154 ------------------------------------DVPV-----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 154 ------------------------------------~~~~-----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~ 191 (302)
++.- .. ........+..+-+||+|++.+|+++|+|||+
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 177 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0000 00 00000112222334999999999999999997
Q ss_pred ---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+.+.|+++.+ +.++++++|+...+..
T Consensus 178 ~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~ 213 (253)
T PRK14267 178 ANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAAR 213 (253)
T ss_pred ccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHh
Confidence 99999999999999864 5799999998776544
No 227
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.82 E-value=3.1e-20 Score=185.94 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=101.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~---------- 153 (302)
++++|+|+++++||.++|+|+||||||||+|.|+|++.|+.|+|.++|.|...... ++|+.++.+..
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eN 566 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIREN 566 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHH
Confidence 47889999999999999999999999999999999999999999999998754322 12222222210
Q ss_pred ---------------------------------CCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 154 ---------------------------------DVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 154 ---------------------------------~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.++-....+..-.++.+-+||||+.++|+++|+|||| |+.+.+
T Consensus 567 i~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~ 646 (709)
T COG2274 567 IALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646 (709)
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHH
Confidence 01111111122233344445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|.++.. ++|+++++|....+
T Consensus 647 ~I~~~L~~~~~--~~T~I~IaHRl~ti 671 (709)
T COG2274 647 IILQNLLQILQ--GRTVIIIAHRLSTI 671 (709)
T ss_pred HHHHHHHHHhc--CCeEEEEEccchHh
Confidence 99999999863 67888999865443
No 228
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.9e-20 Score=166.71 Aligned_cols=138 Identities=9% Similarity=0.058 Sum_probs=97.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--hH---HHHHHHhccc----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--AA---YEQLLILGKY---- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~~---~~ql~~~~~~---- 152 (302)
++++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.|.++... .. ...+.+..+.
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 478999999999999999999999999999999999974 899999998765320 00 0001111111
Q ss_pred ----------------------------------CCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881 153 ----------------------------------NDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG- 191 (302)
Q Consensus 153 ----------------------------------~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~- 191 (302)
.++.- . .........+..+-+||+|++.+|++||+|||+
T Consensus 113 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 192 (267)
T PRK14235 113 PKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCS 192 (267)
T ss_pred CCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 01100 0 000001112233334999999999999999997
Q ss_pred --CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+++.|+++.+ +.++++++|+...+..
T Consensus 193 ~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~ 227 (267)
T PRK14235 193 ALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAAR 227 (267)
T ss_pred CCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHh
Confidence 99999999999999864 5789999998766433
No 229
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=3.8e-20 Score=160.52 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=98.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV-------- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~-------- 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+....... .++.+..+...+
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~ 101 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN 101 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence 478999999999999999999999999999999999999999999998765321111 111111111100
Q ss_pred -Ceeec---------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcc
Q psy2881 156 -PVISE---------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFE 216 (302)
Q Consensus 156 -~~~~~---------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~ 216 (302)
.+... .......+..+-+||+|++.+|+++|+|||+ |+.....+++.|+++. .+.++++
T Consensus 102 l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii 179 (207)
T cd03369 102 LDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILT 179 (207)
T ss_pred hcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 00000 0001112233334999999999999999997 8999999999999874 2789999
Q ss_pred ccceeehhh
Q psy2881 217 LPYEIFLII 225 (302)
Q Consensus 217 ~~hd~~lvl 225 (302)
+||+...+.
T Consensus 180 ~th~~~~~~ 188 (207)
T cd03369 180 IAHRLRTII 188 (207)
T ss_pred EeCCHHHHh
Confidence 999877653
No 230
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=5.4e-20 Score=156.09 Aligned_cols=144 Identities=16% Similarity=0.194 Sum_probs=109.2
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCee-------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI------- 158 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~------- 158 (302)
+++++++|+++.+|+++.++|.|||||||+++.|+|.+.|++|+|.++|.|+.+.+..+.-.++++-++-|..
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 3578899999999999999999999999999999999999999999999999876554332222221111000
Q ss_pred --------e---cCCCCCH----------------------------------HHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 159 --------S---EKKITDP----------------------------------AAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 159 --------~---~~~~~~~----------------------------------~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
. ...+... .+...-.+..|-.+.|+++++||-|
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAA 178 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhc
Confidence 0 0000000 0000111667888999999999998
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCCC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNT 229 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~ 229 (302)
||.+...+|+.-.++.+..+.|.+++||++..+++++.
T Consensus 179 LDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~ 217 (263)
T COG1101 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGN 217 (263)
T ss_pred CCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCC
Confidence 99999999999999999989999999999998888774
No 231
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.2e-20 Score=164.53 Aligned_cols=138 Identities=10% Similarity=0.090 Sum_probs=96.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h--H-HHHHHHhcccC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A--A-YEQLLILGKYN--- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~--~-~~ql~~~~~~~--- 153 (302)
++++++||++.+|++++|+||||||||||+++|+|++. |++|+|.++|.++... . . ...+.+..+..
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 47899999999999999999999999999999999864 5789999988765310 0 0 00111111110
Q ss_pred ----------------------------------CCCe-----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 154 ----------------------------------DVPV-----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 154 ----------------------------------~~~~-----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
++.- .. ........+..+-+||+|++.+|+++|+|||+
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~ 179 (253)
T PRK14242 100 PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179 (253)
T ss_pred cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0000 00 00001112233334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+.+.|+++.+ +.++++++||...+..
T Consensus 180 LD~~~~~~l~~~l~~~~~--~~tvii~tH~~~~~~~ 213 (253)
T PRK14242 180 LDPIATQKIEELIHELKA--RYTIIIVTHNMQQAAR 213 (253)
T ss_pred CCHHHHHHHHHHHHHHhc--CCeEEEEEecHHHHHH
Confidence 99999999999999853 6789999998776543
No 232
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=4.2e-20 Score=164.58 Aligned_cols=139 Identities=21% Similarity=0.241 Sum_probs=98.0
Q ss_pred cCCCcceec-----CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC----------CChhHHHHHHHh---
Q psy2881 88 LEKPLIFKK-----CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT----------FRAAAYEQLLIL--- 149 (302)
Q Consensus 88 ~l~~i~l~~-----~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~----------~~~~~~~ql~~~--- 149 (302)
.+.++++++ .+|++++|+||||||||||+++|+|+++|++|+|.+.+..+ +.....+.+..+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 88 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKD 88 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhh
Confidence 455666665 47999999999999999999999999999999998877321 111222222211
Q ss_pred -----------cccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchh
Q psy2881 150 -----------GKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKK 213 (302)
Q Consensus 150 -----------~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~ 213 (302)
.+.+++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+.+.|+++++..+.+
T Consensus 89 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 168 (246)
T cd03237 89 FYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKT 168 (246)
T ss_pred ccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 1111111000 00111223344456999999999999999998 9999999999999998766889
Q ss_pred hccccceeehhhc
Q psy2881 214 IFELPYEIFLIID 226 (302)
Q Consensus 214 i~~~~hd~~lvl~ 226 (302)
+++++||...+..
T Consensus 169 iiivsHd~~~~~~ 181 (246)
T cd03237 169 AFVVEHDIIMIDY 181 (246)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999876654
No 233
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.82 E-value=4.4e-20 Score=179.97 Aligned_cols=140 Identities=13% Similarity=0.032 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCCee-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVPVI----- 158 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~~~----- 158 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+....... ..+.+..+.....++
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 96 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED 96 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence 478999999999999999999999999999999999999999999887665322211 112222221111000
Q ss_pred ----ecCC------------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH
Q psy2881 159 ----SEKK------------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR 201 (302)
Q Consensus 159 ----~~~~------------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~ 201 (302)
.... .....+..+-+||+|++.+|+++|+|||+ |+.+...+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 176 (490)
T PRK10938 97 DTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAE 176 (490)
T ss_pred hccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0000 00001111223999999999999999998 9999999999
Q ss_pred HHHHHHHHhchhhccccceeehhhcC
Q psy2881 202 ELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 202 ~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.|.++.+. +.++++++||...+.+.
T Consensus 177 ~l~~~~~~-g~tvii~tH~~~~~~~~ 201 (490)
T PRK10938 177 LLASLHQS-GITLVLVLNRFDEIPDF 201 (490)
T ss_pred HHHHHHhc-CCeEEEEeCCHHHHHhh
Confidence 99999764 78999999998766543
No 234
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.82 E-value=7.8e-20 Score=160.73 Aligned_cols=136 Identities=14% Similarity=0.112 Sum_probs=96.8
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh---hCCCeEEEecccCCCh-------------------hHH
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK---KRKKSVLLAACDTFRA-------------------AAY 143 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~---~~~g~V~l~~~d~~~~-------------------~~~ 143 (302)
+++++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.|.+.... ...
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 457899999999999999999999999999999999999 8999999988764210 111
Q ss_pred HHHHHhccc----------------------CCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 144 EQLLILGKY----------------------NDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 144 ~ql~~~~~~----------------------~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
+.+...... .++.-.. ........+..+-++++|++.+|+++|+|||+ |+.+.
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 111110000 0000000 00001112222234999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceee
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
..+.+.|.++.+. +.++++++|+..
T Consensus 180 ~~~~~~l~~~~~~-~~tiii~sh~~~ 204 (226)
T cd03234 180 LNLVSTLSQLARR-NRIVILTIHQPR 204 (226)
T ss_pred HHHHHHHHHHHHC-CCEEEEEecCCC
Confidence 9999999998754 789999999873
No 235
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=3.8e-20 Score=160.17 Aligned_cols=139 Identities=17% Similarity=0.122 Sum_probs=96.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------cC--CChhHHHHHHHh---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------DT--FRAAAYEQLLIL--------- 149 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d~--~~~~~~~ql~~~--------- 149 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|. +. +.....+.+...
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~ 98 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYE 98 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHH
Confidence 4789999999999999999999999999999999999999999987651 11 111111111110
Q ss_pred --cccCCC-----------C-ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHHh
Q psy2881 150 --GKYNDV-----------P-VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKVI 210 (302)
Q Consensus 150 --~~~~~~-----------~-~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~~ 210 (302)
.+..++ . .. .........+..+-+||+|++.+|+++|+|||+ |+.....+++. +.++.+.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~- 177 (204)
T cd03250 99 KVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN- 177 (204)
T ss_pred HHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-
Confidence 000010 0 00 011122334455566999999999999999997 88777778774 4555443
Q ss_pred chhhccccceeehhhc
Q psy2881 211 EKKIFELPYEIFLIID 226 (302)
Q Consensus 211 ~~~i~~~~hd~~lvl~ 226 (302)
+.++++++|+...+..
T Consensus 178 ~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 178 NKTRILVTHQLQLLPH 193 (204)
T ss_pred CCEEEEEeCCHHHHhh
Confidence 7899999998766543
No 236
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.82 E-value=3.6e-20 Score=167.38 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=99.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC--------CCeEEEecccCCChhHH---HHHHHhcccCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR--------KKSVLLAACDTFRAAAY---EQLLILGKYND- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~--------~g~V~l~~~d~~~~~~~---~ql~~~~~~~~- 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|+ +|+|.+.|.+....... ....+..+...
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 4789999999999999999999999999999999999987 89999998775432111 11111111110
Q ss_pred ---CC------e--eecCC--C---CCH--------------------------HHHHHHHHHHHHh---------CCCC
Q psy2881 155 ---VP------V--ISEKK--I---TDP--------------------------AAIAFNAINIAQK---------KNTD 183 (302)
Q Consensus 155 ---~~------~--~~~~~--~---~~~--------------------------~~~~~~~la~al~---------~~~~ 183 (302)
.. + ..... . ... .+..+-+|++|++ .+|+
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~ 174 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174 (272)
T ss_pred CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCC
Confidence 00 0 00000 0 000 0111112899999 4999
Q ss_pred eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 184 IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 184 llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
++|+|||+ |+.+...+++.|.++.+..+.++++++||...+..
T Consensus 175 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~ 220 (272)
T PRK13547 175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAAR 220 (272)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 99999997 99999999999999877657899999998776544
No 237
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.2e-20 Score=164.16 Aligned_cols=138 Identities=9% Similarity=0.073 Sum_probs=96.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--h---HHHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--A---AYEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~---~~~ql~~~~~~~~~- 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.|.++... . ....+.+..+....
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 478999999999999999999999999999999999987 489999988764310 0 00111111111000
Q ss_pred --C------eeec----------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 156 --P------VISE----------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 156 --~------~~~~----------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
. +... .......+..+-+||+|++.+|+++|+|||+
T Consensus 101 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~ 180 (254)
T PRK14273 101 LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSA 180 (254)
T ss_pred cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 0 0000 0001111222334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|..+...+++.|.++.+ +.++++++|+...+..
T Consensus 181 LD~~~~~~l~~~l~~~~~--~~tvii~sH~~~~~~~ 214 (254)
T PRK14273 181 LDPISTGKIEELIINLKE--SYTIIIVTHNMQQAGR 214 (254)
T ss_pred cCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH
Confidence 99999999999999853 5789999998776543
No 238
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3e-20 Score=181.93 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=101.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCCC----Ce-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYNDV----PV- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~----~~- 157 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+...+ .+
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 98 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVL 98 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHH
Confidence 4789999999999999999999999999999999999999999999987764322111 01111111100 00
Q ss_pred ----eec-----CCCC---C-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 158 ----ISE-----KKIT---D-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 158 ----~~~-----~~~~---~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
+.. ..+. + ..+..+-+||+|++.+|+++|+|||+ |+
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~ 178 (510)
T PRK09700 99 ENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178 (510)
T ss_pred HHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 000 0000 0 01111123999999999999999998 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.+...+++.|+++++. +.+++++|||...+...+
T Consensus 179 ~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~ 212 (510)
T PRK09700 179 KEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRIC 212 (510)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhC
Confidence 9999999999999764 889999999988766543
No 239
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.3e-20 Score=165.55 Aligned_cols=140 Identities=12% Similarity=0.125 Sum_probs=97.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCC----hhH-HHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFR----AAA-YEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~----~~~-~~ql~~~~~~~~~- 155 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.|.++.. ... ...+.+..+...+
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 106 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPF 106 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccc
Confidence 47899999999999999999999999999999999987 589999998876431 000 0011111111000
Q ss_pred --------Ceeec--------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 156 --------PVISE--------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 156 --------~~~~~--------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d 192 (302)
.+... .......+..+-+||+|++.+|+++|+|||+ |
T Consensus 107 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD 186 (269)
T PRK14259 107 PKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186 (269)
T ss_pred hhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 00000 0001112222334999999999999999997 9
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+.+...+++.|.++.+ +.+++++||+...+...+
T Consensus 187 ~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~ 220 (269)
T PRK14259 187 PISTLKIEETMHELKK--NFTIVIVTHNMQQAVRVS 220 (269)
T ss_pred HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhc
Confidence 9999999999998853 578999999876654433
No 240
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.81 E-value=6e-20 Score=163.94 Aligned_cols=138 Identities=17% Similarity=0.152 Sum_probs=99.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH--hhhCCCeEEEecccCCChhH----------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAA---------------------- 142 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~~~g~V~l~~~d~~~~~~---------------------- 142 (302)
.+++++||++.+|++++|+||||||||||+++|+|+ ++|++|+|.+.|.++.....
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 100 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVS 100 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccccc
Confidence 478999999999999999999999999999999998 57899999998866432110
Q ss_pred -HHHHHHh-------------------------cccCCCC--eeecCC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881 143 -YEQLLIL-------------------------GKYNDVP--VISEKK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG- 191 (302)
Q Consensus 143 -~~ql~~~-------------------------~~~~~~~--~~~~~~--~~~~~~~~~~~la~al~~~~~llllDEP~- 191 (302)
.+.+... ....+++ ...... .....+..+-+||+|++.+|+++|+|||+
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 180 (252)
T CHL00131 101 NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDS 180 (252)
T ss_pred HHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 0111100 0001111 000000 12223344445999999999999999997
Q ss_pred --CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
|..+...+++.|+++.+ .+.+++++|||..++.
T Consensus 181 ~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~ 215 (252)
T CHL00131 181 GLDIDALKIIAEGINKLMT-SENSIILITHYQRLLD 215 (252)
T ss_pred cCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHH
Confidence 99999999999999875 4789999999877643
No 241
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6e-20 Score=164.65 Aligned_cols=138 Identities=12% Similarity=0.098 Sum_probs=96.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh---------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--------------------- 140 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--------------------- 140 (302)
++++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.|.++.+.
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 478999999999999999999999999999999999874 699999988765210
Q ss_pred ---hHHHHHHHhc-------------------ccCCCC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881 141 ---AAYEQLLILG-------------------KYNDVP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG- 191 (302)
Q Consensus 141 ---~~~~ql~~~~-------------------~~~~~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~- 191 (302)
...+.+.... +..++. .. .........+..+-+||+|++.+|+++|+|||+
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 177 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCS 177 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 0011111000 000000 00 000001112223334999999999999999997
Q ss_pred --CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+++.|.++.+ +.++++++|+...+..
T Consensus 178 ~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~~~~~ 212 (258)
T PRK14241 178 ALDPISTLAIEDLINELKQ--DYTIVIVTHNMQQAAR 212 (258)
T ss_pred cCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHH
Confidence 99999999999999853 5789999998776544
No 242
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.81 E-value=7.6e-20 Score=162.85 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=98.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEecccCCChhHHHH----HHHhccc--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAACDTFRAAAYEQ----LLILGKY-------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~-------- 152 (302)
++++++||++++|++++|+||||||||||+++|+|++ +|++|+|.+.|.+..+...... +.+..+.
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 94 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVS 94 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchh
Confidence 4789999999999999999999999999999999995 6899999999876532111000 0000000
Q ss_pred ------------------------------------CCCC--eeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881 153 ------------------------------------NDVP--VISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG- 191 (302)
Q Consensus 153 ------------------------------------~~~~--~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~- 191 (302)
.+++ ..... ......+..+-+||+|++.+|+++|+|||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~ 174 (248)
T PRK09580 95 NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDS 174 (248)
T ss_pred HHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 0000 00000 012223334445999999999999999998
Q ss_pred --CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
|..+...+.+.|+++.+ .+.+++++|||..++.
T Consensus 175 ~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~ 209 (248)
T PRK09580 175 GLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILD 209 (248)
T ss_pred cCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence 99999999999998865 4789999999876543
No 243
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=3.3e-20 Score=176.80 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=99.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHH----HHhccc----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL----LILGKY---------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql----~~~~~~---------- 152 (302)
++++++||++.+||+++|+|.||||||||+|.|+|.++|++|+|.++|......+..+-. ....|.
T Consensus 22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVa 101 (500)
T COG1129 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVA 101 (500)
T ss_pred eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHH
Confidence 479999999999999999999999999999999999999999999999876422211110 000000
Q ss_pred -------------------------------CCCCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 153 -------------------------------NDVPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 153 -------------------------------~~~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
.++... ..-......+...-.||+|+..++++||+|||| .....
T Consensus 102 eNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~ 181 (500)
T COG1129 102 ENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181 (500)
T ss_pred HHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 000000 000000111222223999999999999999998 55666
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
..+++.++++.+ .|.+++++||.+..+..-+
T Consensus 182 ~~Lf~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~ 212 (500)
T COG1129 182 ERLFDLIRRLKA-QGVAIIYISHRLDEVFEIA 212 (500)
T ss_pred HHHHHHHHHHHh-CCCEEEEEcCcHHHHHHhc
Confidence 778999999875 5899999999877666543
No 244
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2e-20 Score=187.16 Aligned_cols=142 Identities=12% Similarity=0.115 Sum_probs=103.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------HHHHhcccC--CC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------QLLILGKYN--DV--- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------ql~~~~~~~--~~--- 155 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.++.+.. .+
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 4788999999999999999999999999999999999999999999987764321110 011111110 00
Q ss_pred -Ce-------e-ecC-----------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881 156 -PV-------I-SEK-----------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS 194 (302)
Q Consensus 156 -~~-------~-~~~-----------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~ 194 (302)
.+ . ... ....-.+..+-+||+|++.+|++||+|||+ |..
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~ 497 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 00 0 000 000011112223999999999999999998 999
Q ss_pred chHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.+..+++.|+++.+..+.+++++|||+..+...+
T Consensus 498 ~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~ 531 (623)
T PRK10261 498 IRGQIINLLLDLQRDFGIAYLFISHDMAVVERIS 531 (623)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 9999999999998777889999999998776644
No 245
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=7.7e-20 Score=163.98 Aligned_cols=139 Identities=13% Similarity=0.074 Sum_probs=97.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChh----H-HHHHHHhcccC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAA----A-YEQLLILGKYN--- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~----~-~~ql~~~~~~~--- 153 (302)
++++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.|.++.... . ...+.+..+..
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 478999999999999999999999999999999999875 7999999887643110 0 00011111110
Q ss_pred ---------------------------------CCC-e----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881 154 ---------------------------------DVP-V----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--- 191 (302)
Q Consensus 154 ---------------------------------~~~-~----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~--- 191 (302)
++. . .. ........+..+-+||+|++.+|+++|+|||+
T Consensus 106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~L 185 (258)
T PRK14268 106 PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185 (258)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 000 0 00 00001112223334999999999999999997
Q ss_pred CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|..+...+++.|+++.+ +.++++++||...+.+.
T Consensus 186 D~~~~~~l~~~l~~l~~--~~tiiivsH~~~~~~~~ 219 (258)
T PRK14268 186 DPISTARIEDLIMNLKK--DYTIVIVTHNMQQAARI 219 (258)
T ss_pred CHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHHh
Confidence 99999999999999853 68999999998765443
No 246
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.81 E-value=3.6e-20 Score=182.18 Aligned_cols=141 Identities=11% Similarity=0.165 Sum_probs=101.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChhHHH-------HHHHhcccCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAAAYE-------QLLILGKYND 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~~~~-------ql~~~~~~~~ 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.|.++......+ .+.++.+...
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 578999999999999999999999999999999999986 6899999887753221100 0111111100
Q ss_pred --C-Ce-------------eecC-----------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcC
Q psy2881 155 --V-PV-------------ISEK-----------------------------KITDPAAIAFNAINIAQKKNTDIVIVDT 189 (302)
Q Consensus 155 --~-~~-------------~~~~-----------------------------~~~~~~~~~~~~la~al~~~~~llllDE 189 (302)
. +. .... ......+..+-+||+|++.+|+++|+||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE 182 (529)
T PRK15134 103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182 (529)
T ss_pred hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 00 0000 0001111222249999999999999999
Q ss_pred CC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 190 SG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 190 P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|+ |+.+...+++.|+++++..+.+++++|||...+...
T Consensus 183 Pt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~ 223 (529)
T PRK15134 183 PTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKL 223 (529)
T ss_pred CCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHh
Confidence 98 999999999999999776688999999998876553
No 247
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=4.5e-20 Score=159.83 Aligned_cols=141 Identities=20% Similarity=0.190 Sum_probs=103.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC----------ChhHHHHHHHhcccCCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF----------RAAAYEQLLILGKYNDVP 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~----------~~~~~~ql~~~~~~~~~~ 156 (302)
.+|+|+||++.+|+.++|||+||||||||++.|+|.++|++|+|.+.|.-.. ....++.+..++..+|..
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~ 120 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLT 120 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCcc
Confidence 4799999999999999999999999999999999999999999999875321 122344444433333321
Q ss_pred e-------------------ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchh
Q psy2881 157 V-------------------IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKK 213 (302)
Q Consensus 157 ~-------------------~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~ 213 (302)
. .. ........+.++-+++-|...+||++|+||.. |..-++.-.+.+.++.+. +.+
T Consensus 121 ~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~t 199 (249)
T COG1134 121 RKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKT 199 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCE
Confidence 1 00 00011233444555677788999999999984 888888888888888665 589
Q ss_pred hccccceeehhhcCC
Q psy2881 214 IFELPYEIFLIIDGN 228 (302)
Q Consensus 214 i~~~~hd~~lvl~~~ 228 (302)
++++|||...+.+.|
T Consensus 200 iv~VSHd~~~I~~~C 214 (249)
T COG1134 200 IVLVSHDLGAIKQYC 214 (249)
T ss_pred EEEEECCHHHHHHhc
Confidence 999999988776655
No 248
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.81 E-value=1.4e-20 Score=164.16 Aligned_cols=137 Identities=16% Similarity=0.020 Sum_probs=94.2
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-EecccCC---------ChhHHHHHHHhcccCCCCe
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-LAACDTF---------RAAAYEQLLILGKYNDVPV 157 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-l~~~d~~---------~~~~~~ql~~~~~~~~~~~ 157 (302)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|. +.+.... .....+.+..+....+...
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 57899999999999999999999999999999999999999997 6554321 1122333333222111100
Q ss_pred ---------------ee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccc
Q psy2881 158 ---------------IS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFEL 217 (302)
Q Consensus 158 ---------------~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~ 217 (302)
.. ........+..+-++|+|++.+|+++|+|||+ |+.+...+++.+.+..+ +.+++++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~v 159 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVL 159 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEE
Confidence 00 00001112233335999999999999999996 88888888887765433 3578899
Q ss_pred cceeehhhc
Q psy2881 218 PYEIFLIID 226 (302)
Q Consensus 218 ~hd~~lvl~ 226 (302)
+|++..+..
T Consensus 160 sH~~~~~~~ 168 (213)
T PRK15177 160 THNPRLIKE 168 (213)
T ss_pred ECCHHHHHH
Confidence 998876543
No 249
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.81 E-value=4.9e-20 Score=172.83 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=99.9
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-----------------------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----------------------- 144 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----------------------- 144 (302)
+.++|||++.+|+|.+|+|.||+|||||+++|.|+++|++|+|.++|+...-.+..+
T Consensus 19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~E 98 (501)
T COG3845 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAE 98 (501)
T ss_pred ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhh
Confidence 678999999999999999999999999999999999999999999998764222111
Q ss_pred ---------------------HHHHhcccCCCCeeecCC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 145 ---------------------QLLILGKYNDVPVISEKK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 145 ---------------------ql~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
.+....+++++++-.... .....+..+--|-+||.+++++||+|||| -|+..++
T Consensus 99 NiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~ 178 (501)
T COG3845 99 NIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178 (501)
T ss_pred hhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 111222222221100000 00001111111778999999999999999 6777788
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+++.|+.+++. |++++++||-+..++..+
T Consensus 179 lf~~l~~l~~~-G~tIi~ITHKL~Ev~~ia 207 (501)
T COG3845 179 LFEILRRLAAE-GKTIIFITHKLKEVMAIA 207 (501)
T ss_pred HHHHHHHHHHC-CCEEEEEeccHHHHHHhh
Confidence 99999988764 999999999777666543
No 250
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.3e-20 Score=180.85 Aligned_cols=140 Identities=19% Similarity=0.174 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYND-------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~-------- 154 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+. +.+..+...
T Consensus 12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (491)
T PRK10982 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM 91 (491)
T ss_pred EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence 47899999999999999999999999999999999999999999999977542211111 111111110
Q ss_pred --CCe--eecCC---C---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 --VPV--ISEKK---I---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 --~~~--~~~~~---~---------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.+ ..... . ....+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~ 171 (491)
T PRK10982 92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN 171 (491)
T ss_pred HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 000 00000 0 0011112223999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.+++.|+++++ .+.++++++||...+...
T Consensus 172 ~l~~~l~~l~~-~g~tvii~tH~~~~~~~~ 200 (491)
T PRK10982 172 HLFTIIRKLKE-RGCGIVYISHKMEEIFQL 200 (491)
T ss_pred HHHHHHHHHHh-CCCEEEEEecCHHHHHHh
Confidence 99999999865 478999999998876553
No 251
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.3e-20 Score=163.61 Aligned_cols=137 Identities=10% Similarity=0.132 Sum_probs=96.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h---HHHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A---AYEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~---~~~ql~~~~~~~~~- 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.|.++... . ....+.+..+....
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 47899999999999999999999999999999999986 4789999988765310 0 00111111111000
Q ss_pred C--------ee---------------------------------e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 156 P--------VI---------------------------------S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 156 ~--------~~---------------------------------~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
+ +. . ........+..+-+||+|++.+|+++|+|||+
T Consensus 107 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~ 186 (260)
T PRK10744 107 PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSA 186 (260)
T ss_pred cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcc
Confidence 0 00 0 00001112222234999999999999999998
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
|..+...+++.|.++.+ +.+++++||+...+.
T Consensus 187 LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~ 219 (260)
T PRK10744 187 LDPISTGRIEELITELKQ--DYTVVIVTHNMQQAA 219 (260)
T ss_pred CCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHH
Confidence 99999999999999853 578999999876543
No 252
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.81 E-value=6.8e-20 Score=164.82 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=99.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC---------ChhHHHHHHHh--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF---------RAAAYEQLLIL-------- 149 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~---------~~~~~~ql~~~-------- 149 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|...+ .....+.+...
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~ 117 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKR 117 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCH
Confidence 5789999999999999999999999999999999999999999988774210 11112222110
Q ss_pred ----------cccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhh
Q psy2881 150 ----------GKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKI 214 (302)
Q Consensus 150 ----------~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i 214 (302)
....++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.....+++.|.++.+ .+.++
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~ti 196 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTI 196 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEE
Confidence 0001111000 00112223344445999999999999999997 88889999999998864 47899
Q ss_pred ccccceeehhhc
Q psy2881 215 FELPYEIFLIID 226 (302)
Q Consensus 215 ~~~~hd~~lvl~ 226 (302)
++++|+...+..
T Consensus 197 IiisH~~~~i~~ 208 (264)
T PRK13546 197 FFVSHNLGQVRQ 208 (264)
T ss_pred EEEcCCHHHHHH
Confidence 999998776544
No 253
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.81 E-value=7.8e-20 Score=163.06 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=96.8
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCCC--------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDVP-------- 156 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~~-------- 156 (302)
+++++||++.+|++++|+||||||||||+++|+|+++ .+|+|.++|.++.+....+ .+.+..+.....
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 6899999999999999999999999999999999985 4899999998764322211 111112211100
Q ss_pred --eeecCCC-C-C--------------------------HHHHHHHHHHHHHhC-------CCCeEEEcCCC---Cccch
Q psy2881 157 --VISEKKI-T-D--------------------------PAAIAFNAINIAQKK-------NTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 157 --~~~~~~~-~-~--------------------------~~~~~~~~la~al~~-------~~~llllDEP~---d~~~~ 196 (302)
+...... . . ..+..+-+||+|++. +|+++|+|||+ |+.+.
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~ 169 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ 169 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence 0000000 0 0 011111128999997 67999999997 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
..+++.|+++.+. +.++++++|+...+...
T Consensus 170 ~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~ 199 (248)
T PRK03695 170 AALDRLLSELCQQ-GIAVVMSSHDLNHTLRH 199 (248)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecCHHHHHHh
Confidence 9999999998754 78999999997765443
No 254
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.5e-20 Score=180.57 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=101.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCCChhHHH----HHHHhcccCCC----C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTFRAAAYE----QLLILGKYNDV----P 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~----~ 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.|.++......+ .+.+..+...+ .
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 98 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELS 98 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCc
Confidence 478999999999999999999999999999999999986 7999999987764322111 11111111100 0
Q ss_pred ------eeecC---C--C---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 157 ------VISEK---K--I---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 157 ------~~~~~---~--~---------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
+.... . . ....+..+-+||+|++.+|+++|+|||+ |+..
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~ 178 (506)
T PRK13549 99 VLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESE 178 (506)
T ss_pred HHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 00000 0 0 0011112223999999999999999998 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
...+++.|.++.+ .+.+++++|||...+...+
T Consensus 179 ~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~ 210 (506)
T PRK13549 179 TAVLLDIIRDLKA-HGIACIYISHKLNEVKAIS 210 (506)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhc
Confidence 9999999999965 4789999999988766533
No 255
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.81 E-value=5.4e-20 Score=176.45 Aligned_cols=142 Identities=17% Similarity=0.203 Sum_probs=107.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC----CCeEEEecccCCChhHHHHHHHhcc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR----KKSVLLAACDTFRAAAYEQLLILGK----------- 151 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~----~g~V~l~~~d~~~~~~~~ql~~~~~----------- 151 (302)
.+++|+||++.+||+++|+|.+||||||++..|.|++++. +|+|.+.|.|.......+.-...+.
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 5789999999999999999999999999999999999976 7999999987643322211111111
Q ss_pred ------------------------------------cCCCCeeec--CCCC--CHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881 152 ------------------------------------YNDVPVISE--KKIT--DPAAIAFNAINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 152 ------------------------------------~~~~~~~~~--~~~~--~~~~~~~~~la~al~~~~~llllDEP~ 191 (302)
..+++--.. .++. .-.+..+-.||+|++.+|++||+||||
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence 111111000 0111 112233344999999999999999998
Q ss_pred ---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|...+.++++.|+++.++.|.+++++|||+.++...+
T Consensus 183 TaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~a 222 (539)
T COG1123 183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELA 222 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhc
Confidence 9999999999999999999999999999998877655
No 256
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.81 E-value=7e-20 Score=176.27 Aligned_cols=139 Identities=17% Similarity=0.222 Sum_probs=101.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC---------ChhHHHHHHH---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF---------RAAAYEQLLI--------- 148 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~---------~~~~~~ql~~--------- 148 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+.. .....+.+..
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~ 117 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTK 117 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCH
Confidence 4789999999999999999999999999999999999999999999875421 0112222211
Q ss_pred ---------hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhh
Q psy2881 149 ---------LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKI 214 (302)
Q Consensus 149 ---------~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i 214 (302)
+.+..++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|.++.+ .+.++
T Consensus 118 ~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TI 196 (549)
T PRK13545 118 EKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTI 196 (549)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 01111111100 00112223444456999999999999999997 99999999999998864 47899
Q ss_pred ccccceeehhhc
Q psy2881 215 FELPYEIFLIID 226 (302)
Q Consensus 215 ~~~~hd~~lvl~ 226 (302)
++++||...+..
T Consensus 197 IIVSHdl~~i~~ 208 (549)
T PRK13545 197 FFISHSLSQVKS 208 (549)
T ss_pred EEEECCHHHHHH
Confidence 999999876654
No 257
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=163.19 Aligned_cols=138 Identities=10% Similarity=0.133 Sum_probs=96.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h--H-HHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A--A-YEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~--~-~~ql~~~~~~~~~- 155 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.|.++... . . ...+.+..+....
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 114 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPF 114 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccC
Confidence 47899999999999999999999999999999999864 6899999988765310 0 0 0001111111000
Q ss_pred --C--------------------------------ee--------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 156 --P--------------------------------VI--------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 156 --~--------------------------------~~--------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
. .. .........+..+-+||+|++.+|+++|+|||+
T Consensus 115 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~ 194 (268)
T PRK14248 115 PKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASA 194 (268)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcc
Confidence 0 00 000001112222334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+.+.|+++.+ +.++++++||...+..
T Consensus 195 LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~ 228 (268)
T PRK14248 195 LDPISNAKIEELITELKE--EYSIIIVTHNMQQALR 228 (268)
T ss_pred cCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHH
Confidence 99999999999999854 5789999998776544
No 258
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.4e-20 Score=180.40 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=100.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCC----CC--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYND----VP-- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~----~~-- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+. +.+..+... ..
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVA 97 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHH
Confidence 47899999999999999999999999999999999999999999999877542111111 111111100 00
Q ss_pred ----e--eecCCC------------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 157 ----V--ISEKKI------------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 157 ----~--~~~~~~------------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+ ...... ....+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 177 (501)
T PRK11288 98 ENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIE 177 (501)
T ss_pred HHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHH
Confidence 0 000000 0111222223999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.+++.|.++.+ .+.+++++|||...+...
T Consensus 178 ~l~~~l~~~~~-~g~tiiiitHd~~~~~~~ 206 (501)
T PRK11288 178 QLFRVIRELRA-EGRVILYVSHRMEEIFAL 206 (501)
T ss_pred HHHHHHHHHHh-CCCEEEEEeCCHHHHHHh
Confidence 99999999865 478999999998776543
No 259
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.81 E-value=1.1e-19 Score=177.52 Aligned_cols=141 Identities=9% Similarity=0.124 Sum_probs=100.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHH----HHHHhcccCC-------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYE----QLLILGKYND------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~------- 154 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.|.++....... .+.++.+...
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 353 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI 353 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCC
Confidence 478999999999999999999999999999999999985 8999999887653211100 0111111100
Q ss_pred --------CCeeecC---------------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 155 --------VPVISEK---------------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 155 --------~~~~~~~---------------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
.+..... ......+..+-+||+|++.+|+++|+|||+
T Consensus 354 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~ 433 (500)
T TIGR02633 354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRG 433 (500)
T ss_pred CCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 0000000 000111222223999999999999999998
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+.+...+++.|.++++. +.+++++|||...+...+
T Consensus 434 LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~ 470 (500)
T TIGR02633 434 VDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLS 470 (500)
T ss_pred cCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhC
Confidence 999999999999998765 889999999988765544
No 260
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.80 E-value=1.3e-19 Score=177.09 Aligned_cols=140 Identities=12% Similarity=0.150 Sum_probs=100.6
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccC----------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYN---------- 153 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~---------- 153 (302)
+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ ++.++.+..
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 478999999999999999999999999999999999999999999987653211100 111111110
Q ss_pred ------------------------------------CCC-eeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881 154 ------------------------------------DVP-VISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG--- 191 (302)
Q Consensus 154 ------------------------------------~~~-~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~--- 191 (302)
++. -... .......+..+-.||+|++.+|+++|+|||+
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 000 0000 0000111222233999999999999999998
Q ss_pred CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+.+...+.+.|+++.+. +.+++++|||...+...+
T Consensus 427 D~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~ 462 (501)
T PRK10762 427 DVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMS 462 (501)
T ss_pred CHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhC
Confidence 999999999999999764 889999999987765543
No 261
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.3e-19 Score=176.78 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=101.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccC-------CC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYN-------DV 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~-------~~ 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+.+|++|+|.+.|.++.+...... +.+..+.. +.
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 341 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL 341 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence 46899999999999999999999999999999999999999999999877643211110 00010000 00
Q ss_pred C-----------eeec-------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 156 P-----------VISE-------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 156 ~-----------~~~~-------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
. .... .......+..+-+||++++.+|+++|+|||+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~g 421 (491)
T PRK10982 342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRG 421 (491)
T ss_pred cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 0 0000 0000111222334999999999999999998
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+.+...+++.|.++.+. +.+++++|||...+...+
T Consensus 422 LD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~ 458 (491)
T PRK10982 422 IDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGIT 458 (491)
T ss_pred cChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHhhC
Confidence 999999999999998764 889999999988765443
No 262
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.4e-19 Score=161.57 Aligned_cols=138 Identities=12% Similarity=0.101 Sum_probs=96.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A------------------ 141 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~------------------ 141 (302)
++++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.|.++... .
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 47899999999999999999999999999999999987 4799999998765310 0
Q ss_pred ---HHHHHHHhcc-------------------cCCCC-----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 142 ---AYEQLLILGK-------------------YNDVP-----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 142 ---~~~ql~~~~~-------------------~~~~~-----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
..+.+..... ..++. ... ........+..+-+||+|++.+|+++|+|||+
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~ 177 (251)
T PRK14251 98 PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSA 177 (251)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcc
Confidence 0111110000 00000 000 00001112223334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+++.|.++.+ +.+++++||+...+.+
T Consensus 178 LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~ 211 (251)
T PRK14251 178 LDPISSSEIEETLMELKH--QYTFIMVTHNLQQAGR 211 (251)
T ss_pred CCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHh
Confidence 99999999999999853 5789999998776544
No 263
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.5e-19 Score=176.97 Aligned_cols=141 Identities=9% Similarity=0.119 Sum_probs=100.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHH----HHHhcccC-------C
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQ----LLILGKYN-------D 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~-------~ 154 (302)
++++++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.|.++........ +.+..+.. +
T Consensus 276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (506)
T PRK13549 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV 355 (506)
T ss_pred ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence 47899999999999999999999999999999999998 589999998876532111000 11111110 0
Q ss_pred CC--------eeecCC---------------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 155 VP--------VISEKK---------------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 155 ~~--------~~~~~~---------------------------------~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
.. ...... .....+..+-+||+|++.+|+++|+|||+
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~ 435 (506)
T PRK13549 356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435 (506)
T ss_pred CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 00 000000 00011122223999999999999999998
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+.+...+++.|.++++. +.+++++|||+..+...+
T Consensus 436 LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~ 472 (506)
T PRK13549 436 IDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLS 472 (506)
T ss_pred cCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhC
Confidence 999999999999998764 889999999987765443
No 264
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.9e-19 Score=160.89 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=97.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--h---CCCeEEEecccCCChh--H---HHHHHHhcccC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--K---RKKSVLLAACDTFRAA--A---YEQLLILGKYN--- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~---~~g~V~l~~~d~~~~~--~---~~ql~~~~~~~--- 153 (302)
++++++||++++|++++|+||||||||||+++|+|+++ | ++|+|.+.|.++.+.. . ...+.+..+..
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 47899999999999999999999999999999999986 4 5899999987653210 0 00010111110
Q ss_pred -----------------------------------CCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881 154 -----------------------------------DVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG- 191 (302)
Q Consensus 154 -----------------------------------~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~- 191 (302)
++.- . .........+..+-+||+|++.+|+++|+|||+
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 177 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPAS 177 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 0000 0 000001112223334999999999999999997
Q ss_pred --CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|..+...+++.|.++.+ +.++++++|+...+...
T Consensus 178 gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~ 213 (252)
T PRK14256 178 ALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARV 213 (252)
T ss_pred cCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhh
Confidence 99999999999999864 47899999987765443
No 265
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.4e-19 Score=176.88 Aligned_cols=141 Identities=7% Similarity=0.119 Sum_probs=100.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHH----HHhcccC-------C-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL----LILGKYN-------D- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql----~~~~~~~-------~- 154 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+.. .+..+.. .
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 367999999999999999999999999999999999999999999988764321110000 0111110 0
Q ss_pred -----CCe--eec----------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 155 -----VPV--ISE----------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 155 -----~~~--~~~----------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
+.+ ... .......+..+-.||+|++.+|++||+|||+
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 000 000 0000111222223999999999999999998
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+.+...+++.|.++++. +.+++++|||...+...+
T Consensus 427 LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~ 463 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVA 463 (501)
T ss_pred CCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhC
Confidence 999999999999999764 789999999988766544
No 266
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.5e-19 Score=177.01 Aligned_cols=141 Identities=15% Similarity=0.180 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhccc---CCC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKY---NDV---- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~---~~~---- 155 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+..... .+.++.+. .++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 4689999999999999999999999999999999999999999999987653211111 11122221 000
Q ss_pred Ce-----ee-c-----C-------CC---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 156 PV-----IS-E-----K-------KI---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 156 ~~-----~~-~-----~-------~~---------------------------~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
.+ +. . . .. ....+..+-+||+|++.+|+++|+|||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 00 00 0 0 00 000111112399999999999999999
Q ss_pred C---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+ |+.+...+++.|+++++. +.+++++|||...+...+
T Consensus 437 t~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~ 476 (510)
T PRK09700 437 TRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVC 476 (510)
T ss_pred CCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhC
Confidence 8 999999999999998754 889999999987655443
No 267
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2e-19 Score=160.52 Aligned_cols=138 Identities=12% Similarity=0.091 Sum_probs=97.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChh-----HHHHHHHhcccCC--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAA-----AYEQLLILGKYND-- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~-----~~~ql~~~~~~~~-- 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.|.++.... ....+.+..+...
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 478999999999999999999999999999999999875 7899999987753210 0000111111100
Q ss_pred -------CCee---------------------------------e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 155 -------VPVI---------------------------------S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 155 -------~~~~---------------------------------~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
+.+. . ........+..+-+||+|++.+|+++|+|||+
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 177 (251)
T PRK14270 98 PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177 (251)
T ss_pred CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0000 0 00001112223334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+.+.|+++.+ +.+++++||+...+..
T Consensus 178 LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~ 211 (251)
T PRK14270 178 LDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASR 211 (251)
T ss_pred CCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHH
Confidence 99999999999999865 4789999998766543
No 268
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.7e-19 Score=161.83 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=97.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--h---HHHHHHHhcccC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--A---AYEQLLILGKYN--- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~---~~~ql~~~~~~~--- 153 (302)
++++++||++.+|++++|+|+||||||||+++|+|+++| ++|+|.++|.++... . ....+.+..+..
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 478999999999999999999999999999999999885 479999988765310 0 000111111110
Q ss_pred ----------------------------------CCC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 154 ----------------------------------DVP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 154 ----------------------------------~~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
++. .. .........+..+-+||+|++.+|+++|+|||+
T Consensus 101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 180 (259)
T PRK14260 101 PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180 (259)
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 000 00 000001112233334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|+.+...+++.|.++.+ +.+++++||+...+...
T Consensus 181 LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~ 215 (259)
T PRK14260 181 LDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRV 215 (259)
T ss_pred CCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHh
Confidence 99999999999999864 47999999987765443
No 269
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.80 E-value=1.5e-19 Score=157.95 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=94.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA------------------------- 141 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~------------------------- 141 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.++....
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 94 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNAT 94 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccccc
Confidence 4789999999999999999999999999999999999999999999886542110
Q ss_pred HHHHHHHh-----------cccCCCC-ee------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881 142 AYEQLLIL-----------GKYNDVP-VI------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS 194 (302)
Q Consensus 142 ~~~ql~~~-----------~~~~~~~-~~------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~ 194 (302)
..+.+... .+..++. .+ .........+..+-+||+|++.+|+++|+|||+ |+.
T Consensus 95 ~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 174 (218)
T cd03290 95 VEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH 174 (218)
T ss_pred HHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHH
Confidence 00111100 0000000 00 000011223333345999999999999999997 888
Q ss_pred chHHHHH--HHHHHHHHhchhhccccceeehh
Q psy2881 195 TQSHLMR--ELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 195 ~~~~l~~--~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
+...+++ .+..+. ..+.++++++|+...+
T Consensus 175 ~~~~l~~~~ll~~~~-~~~~tii~~sH~~~~~ 205 (218)
T cd03290 175 LSDHLMQEGILKFLQ-DDKRTLVLVTHKLQYL 205 (218)
T ss_pred HHHHHHHHHHHHHHh-cCCCEEEEEeCChHHH
Confidence 8888887 444443 3478999999987654
No 270
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.5e-19 Score=161.47 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=96.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCChh-----HHHHHHHhccc----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRAA-----AYEQLLILGKY---- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~~-----~~~ql~~~~~~---- 152 (302)
++++++||++.+|++++|+||||||||||+++|+|+.+ |++|+|.+.|.++.... ....+.+..+.
T Consensus 19 ~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 98 (251)
T PRK14244 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF 98 (251)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccc
Confidence 47899999999999999999999999999999999986 46899999886542110 00001111111
Q ss_pred ----------------------------------CCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881 153 ----------------------------------NDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG- 191 (302)
Q Consensus 153 ----------------------------------~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~- 191 (302)
.++.- . .........+..+-+||+|++.+|+++|+|||+
T Consensus 99 ~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~ 178 (251)
T PRK14244 99 PKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCS 178 (251)
T ss_pred cCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 01100 0 000001112223334999999999999999998
Q ss_pred --CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|..+...+.+.|.++.+ +.++++++|+...+..
T Consensus 179 ~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 179 ALDPVATNVIENLIQELKK--NFTIIVVTHSMKQAKK 213 (251)
T ss_pred cCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHh
Confidence 89999999999998853 7899999999876544
No 271
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.8e-19 Score=161.58 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=96.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--h---CCCeEEEecccCCC--hh--H-HHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--K---RKKSVLLAACDTFR--AA--A-YEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~---~~g~V~l~~~d~~~--~~--~-~~ql~~~~~~~~~- 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++ | ++|+|.+.|.++.. .. . ...+.+..+...+
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 47899999999999999999999999999999999987 3 58999998876531 00 0 0111111111000
Q ss_pred --------Cee----------------------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 156 --------PVI----------------------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 156 --------~~~----------------------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
.+. .........+..+-+||++++.+|+++|+|||+
T Consensus 106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~ 185 (259)
T PRK14274 106 PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSA 185 (259)
T ss_pred ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 000 000001112223334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+++.|.++.+ +.++++++|+...+..
T Consensus 186 LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~ 219 (259)
T PRK14274 186 LDPVSTRKIEELILKLKE--KYTIVIVTHNMQQAAR 219 (259)
T ss_pred CCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHH
Confidence 99999999999999854 6789999998766543
No 272
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.5e-19 Score=161.34 Aligned_cols=138 Identities=13% Similarity=0.129 Sum_probs=96.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChh--H---HHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAA--A---YEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~--~---~~ql~~~~~~~~~- 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... . ...+.+..+....
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 478999999999999999999999999999999999874 7899999987653210 0 0001111111000
Q ss_pred --C------ee--ec--------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 156 --P------VI--SE--------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 156 --~------~~--~~--------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
. +. .. .......+..+-+||+|++.+|+++|+|||+
T Consensus 97 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~ 176 (250)
T PRK14262 97 PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176 (250)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 0 00 00 0000111222234999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|..+...+++.|.++.+ +.++++++|+...+..
T Consensus 177 LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~ 210 (250)
T PRK14262 177 LDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIR 210 (250)
T ss_pred cCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHH
Confidence 99999999999999864 5789999998765443
No 273
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.7e-19 Score=160.87 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=96.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--h--H-HHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--A--A-YEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~--~-~~ql~~~~~~~~~- 155 (302)
++++++||++++|++++|+||||||||||+++|+|++++ ++|+|.+.|.++... . . ...+.+..+....
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 478999999999999999999999999999999998763 689999998765320 0 0 0011111111000
Q ss_pred C--------ee----------------------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 156 P--------VI----------------------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 156 ~--------~~----------------------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
+ +. .........+..+-+||+|++.+|+++|+|||+
T Consensus 97 ~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 176 (250)
T PRK14240 97 PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176 (250)
T ss_pred cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 0 00 000001112223334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+++.|+++.+ +.+++++||+...+..
T Consensus 177 LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~ 210 (250)
T PRK14240 177 LDPISTLKIEELIQELKK--DYTIVIVTHNMQQASR 210 (250)
T ss_pred CCHHHHHHHHHHHHHHhc--CCeEEEEEeCHHHHHh
Confidence 99999999999999853 6789999998776544
No 274
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.1e-19 Score=161.48 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=99.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCC--hh--H-HHHHHHhcccC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFR--AA--A-YEQLLILGKYN--- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~--~~--~-~~ql~~~~~~~--- 153 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++.. .. . ...+.+..+..
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 4789999999999999999999999999999999999985 7999998876421 00 0 00000001100
Q ss_pred ----------------------------------CCC-e----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 154 ----------------------------------DVP-V----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 154 ----------------------------------~~~-~----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
++. . .. ........+..+-+||++++.+|+++|+|||+
T Consensus 101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~ 180 (261)
T PRK14258 101 PMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180 (261)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 000 0 00 00001122233334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|..+...+.+.|.++++..+.++++++||...+...+
T Consensus 181 LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~ 218 (261)
T PRK14258 181 LDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS 218 (261)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhc
Confidence 9999999999999987655789999999877655433
No 275
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.6e-19 Score=162.16 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=97.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--h--H-HHHHHHhccc----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--A--A-YEQLLILGKY---- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~--~-~~ql~~~~~~---- 152 (302)
++++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.|.++... . . ...+.+..+.
T Consensus 22 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 101 (261)
T PRK14263 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF 101 (261)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc
Confidence 478999999999999999999999999999999999986 689999998775310 0 0 0001111111
Q ss_pred -------------------------------CCCCe-e-----ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 153 -------------------------------NDVPV-I-----SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 153 -------------------------------~~~~~-~-----~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d 192 (302)
.++.- . .........+..+-+||+|++.+|+++|+|||+ |
T Consensus 102 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD 181 (261)
T PRK14263 102 SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181 (261)
T ss_pred cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 00000 0 000001112223334999999999999999997 9
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+...+++.|+++.+ +.++++++|+...+.+
T Consensus 182 ~~~~~~l~~~l~~~~~--~~tii~isH~~~~i~~ 213 (261)
T PRK14263 182 PIATRRVEELMVELKK--DYTIALVTHNMQQAIR 213 (261)
T ss_pred HHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHH
Confidence 9999999999999853 5789999998765443
No 276
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.80 E-value=1.1e-19 Score=178.83 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=96.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~---------- 153 (302)
++++|+||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.|.... .. .++.+..|..
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHH
Confidence 478999999999999999999999999999999999999999999999776433 11 0111111110
Q ss_pred --------------------CC-------C------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 154 --------------------DV-------P------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 154 --------------------~~-------~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
++ | +-.........++.+-+||||+.++|+++|+|||| |..+..
T Consensus 428 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~ 507 (529)
T TIGR02868 428 LRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTES 507 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 00 0 00000111223344445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhcccccee
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
.+++.|.++. .++|+++++|+.
T Consensus 508 ~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 508 ELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHhc--CCCEEEEEecCC
Confidence 9999988763 367999999963
No 277
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.5e-19 Score=164.35 Aligned_cols=138 Identities=10% Similarity=0.111 Sum_probs=97.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh---------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--------------------- 140 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--------------------- 140 (302)
++++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.|.++...
T Consensus 53 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~ 132 (285)
T PRK14254 53 QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPF 132 (285)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 57899999999999999999999999999999999987 5899999988664210
Q ss_pred --hHHHHHHHh-----------------cccCCCC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 141 --AAYEQLLIL-----------------GKYNDVP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 141 --~~~~ql~~~-----------------~~~~~~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d 192 (302)
...+.+... .+..++. .. .........+..+-+||+|++.+|+++|+|||+ |
T Consensus 133 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD 212 (285)
T PRK14254 133 PKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212 (285)
T ss_pred cCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCC
Confidence 011111110 0000110 00 000011122333345999999999999999997 9
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
..+...+.+.|+++.+ +.++++++||...+..
T Consensus 213 ~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~ 244 (285)
T PRK14254 213 PVATSKIEDLIEELAE--EYTVVIVTHNMQQAAR 244 (285)
T ss_pred HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHh
Confidence 9999999999999875 3689999998776543
No 278
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=1.8e-19 Score=161.19 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=95.3
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-----------EecccCCChhHHHHHH---------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-----------LAACDTFRAAAYEQLL--------- 147 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-----------l~~~d~~~~~~~~ql~--------- 147 (302)
+++++++ +.+|++++|+||||||||||+++|+|+++|++|+|. +.|.+...... +..+
T Consensus 16 ~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~i~~~~ 93 (255)
T cd03236 16 KLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT-KLLEGDVKVIVKP 93 (255)
T ss_pred hhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH-Hhhhcccceeeec
Confidence 6788884 899999999999999999999999999999999996 55655432110 0000
Q ss_pred ----------------------------HhcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881 148 ----------------------------ILGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS 194 (302)
Q Consensus 148 ----------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~ 194 (302)
.+.+..++.-... .......+..+-.+|++++.+|+++|+|||+ |+.
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 0000011100000 0001112222334999999999999999998 888
Q ss_pred chHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+...+.+.|+++.+. +.++++++||...+...+
T Consensus 174 ~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~a 206 (255)
T cd03236 174 QRLNAARLIRELAED-DNYVLVVEHDLAVLDYLS 206 (255)
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhC
Confidence 888999999998764 789999999987765433
No 279
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.80 E-value=1.9e-19 Score=161.39 Aligned_cols=137 Identities=12% Similarity=0.086 Sum_probs=97.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYNDV-------- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~~-------- 155 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|.+|+|.+.|.++..... ...+.+..+...+
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~n 114 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN 114 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHh
Confidence 47899999999999999999999999999999999999999999998876532111 0111111111000
Q ss_pred -Cee---------------------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 156 -PVI---------------------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 156 -~~~---------------------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
... .........+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 115 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~ 194 (257)
T cd03288 115 LDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 000 000011122333345999999999999999997 8888888
Q ss_pred HHHHHHHHHHHhchhhccccceeehhh
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
+++.+.++. .+.++++++|+...+.
T Consensus 195 l~~~l~~~~--~~~tiii~sh~~~~~~ 219 (257)
T cd03288 195 LQKVVMTAF--ADRTVVTIAHRVSTIL 219 (257)
T ss_pred HHHHHHHhc--CCCEEEEEecChHHHH
Confidence 988888864 2689999999877654
No 280
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.3e-19 Score=163.72 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=98.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--hH---HHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--AA---YEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~~---~~ql~~~~~~~~~- 155 (302)
++++++||++.+|++++|+|+||||||||+++|+|+++ |++|+|.+.|.++... .. ...+.+..+...+
T Consensus 38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 117 (271)
T PRK14238 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPF 117 (271)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccc
Confidence 47899999999999999999999999999999999987 6899999998765310 00 0011111111000
Q ss_pred --------Ce----ee------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 156 --------PV----IS------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 156 --------~~----~~------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
.+ .. ........+..+-+||+|++.+|+++|+|||+
T Consensus 118 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~ 197 (271)
T PRK14238 118 PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSA 197 (271)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 00 00 00001112222234999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+.+...+++.|.++.+ +.++++++||...+...+
T Consensus 198 LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~ 233 (271)
T PRK14238 198 LDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARIS 233 (271)
T ss_pred CCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhC
Confidence 99999999999999864 578999999877655433
No 281
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.80 E-value=1.9e-19 Score=178.91 Aligned_cols=136 Identities=16% Similarity=0.223 Sum_probs=99.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~--------- 154 (302)
++++++|+++++|+.++|+||||||||||++.|+|+++|++|+|.++|.|...... ..++.+..|...
T Consensus 357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 436 (582)
T PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN 436 (582)
T ss_pred ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHH
Confidence 47899999999999999999999999999999999999999999999987643211 111111111100
Q ss_pred C-----------------------------------CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 155 V-----------------------------------PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 155 ~-----------------------------------~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
+ .+-.........+..+-+||||+.++|+++|+|||| |+.+.
T Consensus 437 i~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~ 516 (582)
T PRK11176 437 IAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516 (582)
T ss_pred HhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHH
Confidence 0 000000111223344445999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
..+++.|.++.+ ++|+++++|+...+
T Consensus 517 ~~i~~~l~~~~~--~~tvI~VtHr~~~~ 542 (582)
T PRK11176 517 RAIQAALDELQK--NRTSLVIAHRLSTI 542 (582)
T ss_pred HHHHHHHHHHhC--CCEEEEEecchHHH
Confidence 999999988743 67999999976543
No 282
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.5e-19 Score=180.88 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=101.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC----------CChhH--------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT----------FRAAA-------------- 142 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~----------~~~~~-------------- 142 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+. .....
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 578999999999999999999999999999999999999999998876421 00000
Q ss_pred --------------HHHHHH-------------------hcccCCCCe----e-ecCCCCCHHHHHHHHHHHHHhCCCCe
Q psy2881 143 --------------YEQLLI-------------------LGKYNDVPV----I-SEKKITDPAAIAFNAINIAQKKNTDI 184 (302)
Q Consensus 143 --------------~~ql~~-------------------~~~~~~~~~----~-~~~~~~~~~~~~~~~la~al~~~~~l 184 (302)
.+++.. +.+..+++- . .........+..+-+||+|++.+|++
T Consensus 110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~l 189 (623)
T PRK10261 110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV 189 (623)
T ss_pred EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCE
Confidence 011100 000011100 0 00000111222333499999999999
Q ss_pred EEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 185 VIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 185 lllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
||+|||+ |+..+..+++.|+++.+..+.+++++|||+..+...+
T Consensus 190 LllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 190 LIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred EEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 9999998 9999999999999998766889999999988776543
No 283
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.3e-19 Score=161.78 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=97.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--hH---HHHHHHhcccC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--AA---YEQLLILGKYN--- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~~---~~ql~~~~~~~--- 153 (302)
++++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++... .. ...+.+..+..
T Consensus 34 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 113 (267)
T PRK14237 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPF 113 (267)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccc
Confidence 57899999999999999999999999999999999986 4799999988765310 00 00011111110
Q ss_pred ----------------------------------CCC-----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 154 ----------------------------------DVP-----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 154 ----------------------------------~~~-----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
++. ... ........+..+-+||+|++.+|+++|+|||+
T Consensus 114 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~ 193 (267)
T PRK14237 114 AKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASA 193 (267)
T ss_pred cccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 000 000 00001112223334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|+.+...+.+.|.++.+ +.++++++|+...+.+.
T Consensus 194 LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~ 228 (267)
T PRK14237 194 LDPISTMQLEETMFELKK--NYTIIIVTHNMQQAARA 228 (267)
T ss_pred CCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHh
Confidence 99999999999998853 57899999987765543
No 284
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.80 E-value=2.2e-19 Score=175.90 Aligned_cols=140 Identities=12% Similarity=0.140 Sum_probs=100.7
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccC----------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYN---------- 153 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~---------- 153 (302)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.++........ +.++.+..
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 5789999999999999999999999999999999999999999998876533211110 11111110
Q ss_pred ---------------------------------CCC--eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881 154 ---------------------------------DVP--VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS 194 (302)
Q Consensus 154 ---------------------------------~~~--~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~ 194 (302)
++. .... .......+..+-+||+|++.+|++||+|||+ |+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 000 0000 0000011122223999999999999999998 999
Q ss_pred chHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+...+++.|+++++. +.+++++|||..++...+
T Consensus 438 ~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~ 470 (510)
T PRK15439 438 ARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMA 470 (510)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhC
Confidence 999999999999764 789999999988766544
No 285
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.4e-19 Score=160.02 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=98.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCChh----H-HHHHHHhcccC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFRAA----A-YEQLLILGKYN--- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~~~----~-~~ql~~~~~~~--- 153 (302)
++++++||++.+|++++|+||||||||||++.|+|+++|+ +|+|.+.|.++.... . ...+.+..+..
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 4789999999999999999999999999999999999987 599999887653210 0 00000011110
Q ss_pred ----------------------------------CCC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 154 ----------------------------------DVP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 154 ----------------------------------~~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
++. .. .........+..+-+|++|++.+|+++|+|||+
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~ 177 (251)
T PRK14249 98 PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177 (251)
T ss_pred cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 000 00 000001112223334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+.+...+.+.|.++. .+.++++++|+...+.+.+
T Consensus 178 LD~~~~~~l~~~l~~~~--~~~tilivsh~~~~~~~~~ 213 (251)
T PRK14249 178 LDPVSTMRIEELMQELK--QNYTIAIVTHNMQQAARAS 213 (251)
T ss_pred CCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhC
Confidence 9999999999999884 3689999999887765543
No 286
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.7e-19 Score=160.99 Aligned_cols=139 Identities=9% Similarity=0.066 Sum_probs=96.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--hH---HHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--AA---YEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~~---~~ql~~~~~~~~~- 155 (302)
++++++||++.+|++++|+||||||||||+++|+|++. |++|+|.+.|.++... .. ...+.+..+...+
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 103 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF 103 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence 57899999999999999999999999999999999986 3789999988765210 00 0011111111000
Q ss_pred ----------Ceeec------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 156 ----------PVISE------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 156 ----------~~~~~------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d 192 (302)
+.... .......+..+-+||+|++.+|+++|+|||+ |
T Consensus 104 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 183 (264)
T PRK14243 104 PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183 (264)
T ss_pred cccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 00000 0000111222234999999999999999997 9
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+.+...+++.|.++.+ +.++++++|+...+...
T Consensus 184 ~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~ 216 (264)
T PRK14243 184 PISTLRIEELMHELKE--QYTIIIVTHNMQQAARV 216 (264)
T ss_pred HHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHh
Confidence 9999999999999865 46899999987665433
No 287
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.7e-19 Score=160.87 Aligned_cols=138 Identities=12% Similarity=0.050 Sum_probs=96.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCC-h--hH-HHHHHHhcccCCC--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFR-A--AA-YEQLLILGKYNDV-- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~-~--~~-~~ql~~~~~~~~~-- 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.|.++.. . .. ...+.+..+...+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP 96 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc
Confidence 478999999999999999999999999999999999986 48999998876521 0 00 1111111111000
Q ss_pred -------Ceeec----------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881 156 -------PVISE----------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG--- 191 (302)
Q Consensus 156 -------~~~~~----------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~--- 191 (302)
.+... .......+..+-+||+|++.+|+++|+|||+
T Consensus 97 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 176 (249)
T PRK14253 97 MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSAL 176 (249)
T ss_pred ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 00000 0001112222234999999999999999997
Q ss_pred CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|..+...+++.|.++.+ +.++++++|+...+..
T Consensus 177 D~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~ 209 (249)
T PRK14253 177 DPIATHKIEELMEELKK--NYTIVIVTHSMQQARR 209 (249)
T ss_pred CHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHH
Confidence 99999999999999865 4789999998776544
No 288
>KOG0058|consensus
Probab=99.80 E-value=1.6e-19 Score=176.17 Aligned_cols=138 Identities=15% Similarity=0.198 Sum_probs=99.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~--------- 154 (302)
++++|+||+++||+++|+|||||+||||+++.|-.+|.|++|+|.++|.|+...... .++...+|..-
T Consensus 482 ~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eN 561 (716)
T KOG0058|consen 482 PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIREN 561 (716)
T ss_pred hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHH
Confidence 378999999999999999999999999999999999999999999999997543321 11122222100
Q ss_pred CCe----------------------------------eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 VPV----------------------------------ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 ~~~----------------------------------~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.+ -.......-.++.+-+||||++++|.++||||+| |..+..
T Consensus 562 I~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~ 641 (716)
T KOG0058|consen 562 IAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEY 641 (716)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHH
Confidence 000 0000001112233345999999999999999998 888888
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+.+.|.++.+ +.|++++.|....|-.
T Consensus 642 lVq~aL~~~~~--~rTVlvIAHRLSTV~~ 668 (716)
T KOG0058|consen 642 LVQEALDRLMQ--GRTVLVIAHRLSTVRH 668 (716)
T ss_pred HHHHHHHHhhc--CCeEEEEehhhhHhhh
Confidence 88888887765 4788888886544433
No 289
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.80 E-value=2.4e-19 Score=178.46 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=98.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~--------- 154 (302)
++++++||++++|+.++|+|||||||||+++.|+|++ |++|+|.++|.|....... +++.+..|...
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 5789999999999999999999999999999999999 9999999999876432211 11111111100
Q ss_pred C--------------------------------C--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 V--------------------------------P--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 ~--------------------------------~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+ . +-.......-.++.+-+||||++++|+++|+|||+ |..+..
T Consensus 443 I~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~ 522 (588)
T PRK11174 443 VLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQ 522 (588)
T ss_pred hhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 0 0 00001112223344445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeeh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+++.|.++. .++|+++++|+...
T Consensus 523 ~i~~~l~~~~--~~~TvIiItHrl~~ 546 (588)
T PRK11174 523 LVMQALNAAS--RRQTTLMVTHQLED 546 (588)
T ss_pred HHHHHHHHHh--CCCEEEEEecChHH
Confidence 9999888875 36799999997644
No 290
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.80 E-value=3.5e-19 Score=156.33 Aligned_cols=130 Identities=13% Similarity=0.146 Sum_probs=90.9
Q ss_pred eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCC------C-----------
Q psy2881 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV------P----------- 156 (302)
Q Consensus 94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~------~----------- 156 (302)
|++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...+.+..+.... .
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG--WRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHh--hCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 46789999999999999999999999999999999999998764210 0000011111000 0
Q ss_pred ---eeecCC-------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881 157 ---VISEKK-------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK 205 (302)
Q Consensus 157 ---~~~~~~-------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~ 205 (302)
...... .....+..+-+|++|++.+|+++|+|||+ |+.+...+++.|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~ 158 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIE 158 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 000000 00111112223999999999999999997 99999999999999
Q ss_pred HHHHhchhhccccceeehhhc
Q psy2881 206 IKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 206 l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+. +.++++++||...+..
T Consensus 159 ~~~~-~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 159 LAGA-GTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHc-CCEEEEEeCCHHHHHH
Confidence 8754 7899999998776544
No 291
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.2e-19 Score=162.12 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=97.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCC--hh--H-HHHHHHhcccCC--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFR--AA--A-YEQLLILGKYND-- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~--~~--~-~~ql~~~~~~~~-- 154 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++.. .. . ...+.+..+...
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 5789999999999999999999999999999999998864 7999998866531 00 0 000101111000
Q ss_pred ----------------------------------CCee-------e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881 155 ----------------------------------VPVI-------S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG- 191 (302)
Q Consensus 155 ----------------------------------~~~~-------~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~- 191 (302)
.... . ........+..+-+||+|++.+|+++|+|||+
T Consensus 98 ~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 177 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTS 177 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 0000 0 00001112223334999999999999999997
Q ss_pred --CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|..+...+++.|+++++ +.++++++|+...+.+.
T Consensus 178 ~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~ 213 (252)
T PRK14272 178 ALDPASTARIEDLMTDLKK--VTTIIIVTHNMHQAARV 213 (252)
T ss_pred cCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHh
Confidence 99999999999999863 58899999987765543
No 292
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.8e-19 Score=159.55 Aligned_cols=139 Identities=9% Similarity=0.088 Sum_probs=96.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH---hhh--CCCeEEEecccCCChh-----HHHHHHHhccc----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY---FKK--RKKSVLLAACDTFRAA-----AYEQLLILGKY---- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~---~~~--~~g~V~l~~~d~~~~~-----~~~ql~~~~~~---- 152 (302)
++++++||++.+|++++|+||||||||||+++|+|+ ++| ++|+|.+.|.++.+.. ....+.+..+.
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPF 96 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccC
Confidence 478999999999999999999999999999999997 344 4899999987653210 00001111111
Q ss_pred ---------------------------------CCCCe-e----e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 153 ---------------------------------NDVPV-I----S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 153 ---------------------------------~~~~~-~----~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
.++.- . . ........+..+-+||+|++.+|+++|+|||+
T Consensus 97 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 176 (250)
T PRK14245 97 PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA 176 (250)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 00000 0 0 00001112233334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|+.+...+++.|+++.+ +.++++++||...+...
T Consensus 177 LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~ 211 (250)
T PRK14245 177 LDPISTAKVEELIHELKK--DYTIVIVTHNMQQAARV 211 (250)
T ss_pred CCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHhh
Confidence 99999999999999853 67899999988765543
No 293
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=3.2e-19 Score=147.57 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=107.0
Q ss_pred HHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC---------ChhHHHHHHHh
Q psy2881 81 LVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF---------RAAAYEQLLIL 149 (302)
Q Consensus 81 l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~---------~~~~~~ql~~~ 149 (302)
+-+.+. .+++++|++.++|+++.|||.+||||||+++||.-+..|+.|+|.++|..+. ..+...|+...
T Consensus 12 lHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 12 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred HHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 334443 4789999999999999999999999999999999999999999999987642 11223333332
Q ss_pred cccC-------CC-------------CeeecC-------------------------CC--CCHHHHHHHHHHHHHhCCC
Q psy2881 150 GKYN-------DV-------------PVISEK-------------------------KI--TDPAAIAFNAINIAQKKNT 182 (302)
Q Consensus 150 ~~~~-------~~-------------~~~~~~-------------------------~~--~~~~~~~~~~la~al~~~~ 182 (302)
..++ ++ |+.... ++ ..-.+..+.+||||++.+|
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP 171 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEP 171 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCC
Confidence 2221 11 110000 00 0011222334999999999
Q ss_pred CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 183 DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 183 ~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+++|+|||| ||...-+++..+++++++ |+|.+++||++.++-+-+
T Consensus 172 ~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vs 219 (256)
T COG4598 172 EVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVS 219 (256)
T ss_pred ceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhh
Confidence 999999998 999999999999999876 899999999988865543
No 294
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.9e-19 Score=159.52 Aligned_cols=138 Identities=8% Similarity=0.091 Sum_probs=95.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--h---CCCeEEEecccCCChh----H-HHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--K---RKKSVLLAACDTFRAA----A-YEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~---~~g~V~l~~~d~~~~~----~-~~ql~~~~~~~~~- 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+.+ | ++|+|.+.|.++.... . ...+.+..+...+
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 47899999999999999999999999999999999853 6 4899999987652100 0 0011111111000
Q ss_pred --Ce----------ee------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 156 --PV----------IS------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 156 --~~----------~~------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
.. .. ........+..+-+||+|++.+|+++|+|||+
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 178 (252)
T PRK14239 99 PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178 (252)
T ss_pred cCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 00 00 00001111222334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|..+...+++.|+++.+ +.++++++|+...+..
T Consensus 179 LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~ 212 (252)
T PRK14239 179 LDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASR 212 (252)
T ss_pred cCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHH
Confidence 99999999999999854 5789999998766544
No 295
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=2.1e-19 Score=176.47 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=100.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe-ccc---CCCh----------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA-ACD---TFRA---------------------- 140 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~-~~d---~~~~---------------------- 140 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+. +.+ ....
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 377 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence 47889999999999999999999999999999999999999999995 432 1100
Q ss_pred ---hHHHHHHH-----------------hcccCCCCe------ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 141 ---AAYEQLLI-----------------LGKYNDVPV------IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 141 ---~~~~ql~~-----------------~~~~~~~~~------~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
...+.+.. +.+.+++.- .. ........+..+-+||+|++.+|+++|+|||+
T Consensus 378 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~ 457 (520)
T TIGR03269 378 PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457 (520)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 01111110 001111110 00 00011122333445999999999999999998
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|+.+...+++.|+++++..+.+++++|||...+...
T Consensus 458 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 494 (520)
T TIGR03269 458 MDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDV 494 (520)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHh
Confidence 999999999999999876688999999998775543
No 296
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2e-19 Score=163.67 Aligned_cols=138 Identities=9% Similarity=0.086 Sum_probs=96.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h---HHHHHHHhcccCCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A---AYEQLLILGKYNDVP 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~---~~~ql~~~~~~~~~~ 156 (302)
++++++||++.+|++++|+||||||||||+++|+|+.+ |++|+|.++|.++... . ....+.+..+...+.
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 132 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPF 132 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCC
Confidence 47899999999999999999999999999999999864 4899999988764311 0 011111111111000
Q ss_pred ---------ee----------------------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 157 ---------VI----------------------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 157 ---------~~----------------------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
+. .........+..+-+||+|++.+|+++|+|||+
T Consensus 133 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~g 212 (286)
T PRK14275 133 PKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSA 212 (286)
T ss_pred ccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 00 000001112223334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|..+...+++.|+++.+ +.++++++||...+.+
T Consensus 213 LD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~ 246 (286)
T PRK14275 213 LDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASR 246 (286)
T ss_pred CCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHH
Confidence 99999999999998864 4789999998776544
No 297
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.79 E-value=2.5e-19 Score=181.39 Aligned_cols=133 Identities=15% Similarity=0.116 Sum_probs=97.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY----------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~----------- 152 (302)
++++|+||++++|+.++|+|||||||||+++.|+|++.|++|+|.++|.|+..... ++++.+..|.
T Consensus 467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 546 (686)
T TIGR03797 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFEN 546 (686)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHH
Confidence 57899999999999999999999999999999999999999999999988643221 1111111111
Q ss_pred ------------------CCCC-------------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 153 ------------------NDVP-------------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 153 ------------------~~~~-------------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
.++. .-.........+..+-+||||+.++|+++|+|||| |+.+...
T Consensus 547 i~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~ 626 (686)
T TIGR03797 547 IAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAI 626 (686)
T ss_pred HhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 1100 00001112234444455999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeeh
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
+++.|+++ ++|+++++|+...
T Consensus 627 i~~~L~~~----~~T~IiItHr~~~ 647 (686)
T TIGR03797 627 VSESLERL----KVTRIVIAHRLST 647 (686)
T ss_pred HHHHHHHh----CCeEEEEecChHH
Confidence 98888775 4689999997544
No 298
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.1e-19 Score=170.88 Aligned_cols=139 Identities=13% Similarity=0.134 Sum_probs=105.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HHHHHHHhcccCCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AYEQLLILGKYNDV-------- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~~ql~~~~~~~~~-------- 155 (302)
++++++||++++|+.++|+|+|||||||++..|+|+++|++|+|.++|.+..... -++|+.+.++...+
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN 414 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN 414 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH
Confidence 5789999999999999999999999999999999999999999999998764322 22333333332110
Q ss_pred --------------------------------C--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 156 --------------------------------P--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 156 --------------------------------~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
. .-....+....+..+-++|||+..+++++|+|||| |.++.+.
T Consensus 415 i~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~ 494 (559)
T COG4988 415 ILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494 (559)
T ss_pred hhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHH
Confidence 0 00011112233444556999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+++.|.++.+. +|++++||+...+.++
T Consensus 495 i~~~l~~l~~~--ktvl~itHrl~~~~~~ 521 (559)
T COG4988 495 ILQALQELAKQ--KTVLVITHRLEDAADA 521 (559)
T ss_pred HHHHHHHHHhC--CeEEEEEcChHHHhcC
Confidence 99999999864 7999999987665544
No 299
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.2e-19 Score=161.24 Aligned_cols=139 Identities=11% Similarity=0.060 Sum_probs=98.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh---------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--------------------- 140 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--------------------- 140 (302)
++++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.|.++.+.
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 578999999999999999999999999999999999873 799999988765321
Q ss_pred --hHHHHHHHhcc-------------------cCCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 141 --AAYEQLLILGK-------------------YNDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 141 --~~~~ql~~~~~-------------------~~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
...+.+..... ..++.- . .........+..+-+||+|++.+|+++|+|||+
T Consensus 119 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~g 198 (272)
T PRK14236 119 PKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSA 198 (272)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCccc
Confidence 00111110000 000000 0 000001112233334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|+.+...+++.|.++.+ +.+++++||+...+...
T Consensus 199 LD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~ 233 (272)
T PRK14236 199 LDPISTLKIEELITELKS--KYTIVIVTHNMQQAARV 233 (272)
T ss_pred CCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhh
Confidence 99999999999999864 57899999988765543
No 300
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.79 E-value=8.1e-20 Score=179.68 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=100.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhcccCC------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKYND------ 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~~~------ 154 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++ ++|+|.+.|.++...... ..+.+..+...
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 47899999999999999999999999999999999985 899999998765322110 01111111110
Q ss_pred CCe--------eec---CC---------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 155 VPV--------ISE---KK---------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 155 ~~~--------~~~---~~---------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
..+ ... .. .....+..+-+||+|++.+|+++|+|||+ |+
T Consensus 379 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 458 (529)
T PRK15134 379 LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458 (529)
T ss_pred ccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence 000 000 00 00011112223999999999999999998 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.+...+++.|+++++..+.+++++|||+..+...
T Consensus 459 ~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~ 492 (529)
T PRK15134 459 TVQAQILALLKSLQQKHQLAYLFISHDLHVVRAL 492 (529)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHh
Confidence 9999999999999876678999999998876543
No 301
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.79 E-value=3e-19 Score=161.41 Aligned_cols=137 Identities=10% Similarity=0.118 Sum_probs=98.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---------------------HH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---------------------EQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---------------------~q 145 (302)
++++++||++++|++++|+||||||||||+++|+|++. .+|+|.++|.++...... +.
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 47899999999999999999999999999999999997 789999999775422110 11
Q ss_pred HHHh-----------cccCCCCeeec-------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 146 LLIL-----------GKYNDVPVISE-------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 146 l~~~-----------~~~~~~~~~~~-------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+..+ .+..++.-+.. .......+..+-.||||++.+|+++|+|||+ |+.+...
T Consensus 97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~ 176 (275)
T cd03289 97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176 (275)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHH
Confidence 1100 00111100000 0011223333445999999999999999998 8998999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+.|.++. .++++++++|+...+..
T Consensus 177 l~~~l~~~~--~~~tii~isH~~~~i~~ 202 (275)
T cd03289 177 IRKTLKQAF--ADCTVILSEHRIEAMLE 202 (275)
T ss_pred HHHHHHHhc--CCCEEEEEECCHHHHHh
Confidence 999998764 37899999998876654
No 302
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.4e-19 Score=161.34 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=98.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChhH----HHHHHHhccc-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAAA----YEQLLILGKY----- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~~----~~ql~~~~~~----- 152 (302)
++++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.|.++..... ...+.+..+.
T Consensus 35 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~ 114 (276)
T PRK14271 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP 114 (276)
T ss_pred EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC
Confidence 578999999999999999999999999999999999985 68999998866432100 0011111111
Q ss_pred --------------------------------CCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881 153 --------------------------------NDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--- 191 (302)
Q Consensus 153 --------------------------------~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~--- 191 (302)
.++.- . .........+..+-+||+|++.+|+++|+|||+
T Consensus 115 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~L 194 (276)
T PRK14271 115 MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSAL 194 (276)
T ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 00000 0 000001122233344999999999999999997
Q ss_pred CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|..+...+++.|.++.+ +.++++++|+...+...
T Consensus 195 D~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~ 228 (276)
T PRK14271 195 DPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARI 228 (276)
T ss_pred CHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHh
Confidence 89999999999999865 47899999988765543
No 303
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-19 Score=162.32 Aligned_cols=138 Identities=11% Similarity=0.070 Sum_probs=95.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--h---CCCeEEEecccCCCh--h--H-HHHHHHhcccCCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--K---RKKSVLLAACDTFRA--A--A-YEQLLILGKYNDVP 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~---~~g~V~l~~~d~~~~--~--~-~~ql~~~~~~~~~~ 156 (302)
.+++++||++.+|++++|+||||||||||+++|+|+.. | ++|+|.+.|.++... . . ...+.+..+...+-
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 47899999999999999999999999999999999875 3 479999998775421 0 0 00011111110000
Q ss_pred ---------eeecC----------------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 157 ---------VISEK----------------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 157 ---------~~~~~----------------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
+.... ......+..+-+||+|++.+|+++|+|||+
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 179 (253)
T PRK14261 100 PKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSA 179 (253)
T ss_pred cccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 00000 000111122223899999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+.+.|.++.+ +.++++++|+...+..
T Consensus 180 LD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~ 213 (253)
T PRK14261 180 LDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAAR 213 (253)
T ss_pred CCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHh
Confidence 99999999999999865 4789999998776544
No 304
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.8e-19 Score=158.76 Aligned_cols=138 Identities=14% Similarity=0.155 Sum_probs=94.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec------ccCCChh-------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA------CDTFRAA------------------- 141 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~------~d~~~~~------------------- 141 (302)
++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.| .+..+..
T Consensus 24 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 103 (257)
T PRK14246 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFP 103 (257)
T ss_pred eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCC
Confidence 478999999999999999999999999999999999999886665544 4432111
Q ss_pred ---HHHHHHHh-------------------cccCCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 142 ---AYEQLLIL-------------------GKYNDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 142 ---~~~ql~~~-------------------~~~~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
..+.+... .+.+++.- . .........+..+-+|++|++.+|+++|+|||+
T Consensus 104 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~ 183 (257)
T PRK14246 104 HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSM 183 (257)
T ss_pred CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCcc
Confidence 01111100 00011100 0 000001122333345999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|..+...+.+.|.++.+ +.++++++|+...+..
T Consensus 184 LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~ 217 (257)
T PRK14246 184 IDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVAR 217 (257)
T ss_pred CCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHH
Confidence 88999999999998854 5799999998776543
No 305
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4e-19 Score=160.78 Aligned_cols=138 Identities=11% Similarity=0.079 Sum_probs=96.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--hH---HHHHHHhcccCC--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--AA---YEQLLILGKYND-- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~~---~~ql~~~~~~~~-- 154 (302)
++++++||++.+|++++|+||||||||||+++|+|++++ .+|+|.+.|.++... .. ...+.++.+...
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~ 113 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF 113 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence 478999999999999999999999999999999999863 589999998765321 00 000111111100
Q ss_pred ---------------------------------CC-----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 155 ---------------------------------VP-----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 155 ---------------------------------~~-----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d 192 (302)
+. ... ........+..+-+||+|++.+|+++|+|||+ |
T Consensus 114 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD 193 (274)
T PRK14265 114 PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193 (274)
T ss_pred cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 00 000 00001112223334999999999999999997 9
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
..+...+.+.|.++.+ +.++++++||...+..
T Consensus 194 ~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~ 225 (274)
T PRK14265 194 PISTRQVEELCLELKE--QYTIIMVTHNMQQASR 225 (274)
T ss_pred HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH
Confidence 9999999999999864 5789999998776543
No 306
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.79 E-value=3.3e-19 Score=177.63 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=99.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q 145 (302)
++++++||++++|+.++|+|+||||||||++.|+|+++|++|+|.++|.|..... ..+.
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~N 434 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN 434 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHH
Confidence 4789999999999999999999999999999999999999999999998753211 1111
Q ss_pred HHH-----------hcccCCC-------------CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 146 LLI-----------LGKYNDV-------------PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 146 l~~-----------~~~~~~~-------------~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+.. ..+..++ .+-.........+..+-+||||+.++|+++|+|||+ |+.+...
T Consensus 435 I~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~ 514 (592)
T PRK10790 435 VTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514 (592)
T ss_pred HHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 111 1111110 000111112234455556999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehh
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
+.+.|.++.+ ++|+++++|+...+
T Consensus 515 i~~~l~~~~~--~~tvIivtHr~~~l 538 (592)
T PRK10790 515 IQQALAAVRE--HTTLVVIAHRLSTI 538 (592)
T ss_pred HHHHHHHHhC--CCEEEEEecchHHH
Confidence 9999988753 57899999976543
No 307
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.79 E-value=3.3e-19 Score=175.36 Aligned_cols=136 Identities=14% Similarity=0.177 Sum_probs=99.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~---------- 153 (302)
++++++||++++|+.++|+||||||||||++.|+|+++|++|+|.++|.|....... .++.+..|..
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~N 415 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN 415 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHH
Confidence 478999999999999999999999999999999999999999999999876432211 1111111110
Q ss_pred --------------------CCC-------------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 154 --------------------DVP-------------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 154 --------------------~~~-------------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
++. +-.........+..+-+||||++++|+++|+|||+ |+.+..
T Consensus 416 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~ 495 (529)
T TIGR02857 416 IRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence 000 00000111223334445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.+.++. .++|+++++|+...+
T Consensus 496 ~i~~~l~~~~--~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 496 LVTEALRALA--QGRTVLLVTHRLALA 520 (529)
T ss_pred HHHHHHHHhc--CCCEEEEEecCHHHH
Confidence 9999998874 368999999987554
No 308
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=1.9e-19 Score=176.65 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=97.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEec-----------------------ccC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAA-----------------------CDT---- 137 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~-----------------------~d~---- 137 (302)
++++++||++.+|++++|+||||||||||++.|+|++ +|++|+|.+.+ .++
T Consensus 14 ~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 93 (520)
T TIGR03269 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEE 93 (520)
T ss_pred EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccc
Confidence 5789999999999999999999999999999999997 69999999862 111
Q ss_pred ---CChhH--HHH----HHHhccc-CC-CC---e-----e-ecCCCCC-----------------------------HHH
Q psy2881 138 ---FRAAA--YEQ----LLILGKY-ND-VP---V-----I-SEKKITD-----------------------------PAA 168 (302)
Q Consensus 138 ---~~~~~--~~q----l~~~~~~-~~-~~---~-----~-~~~~~~~-----------------------------~~~ 168 (302)
..... ... +.+..+. .. .+ . + ....... ..+
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 173 (520)
T TIGR03269 94 VDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGE 173 (520)
T ss_pred hhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHH
Confidence 00000 000 1111111 00 00 0 0 0000000 011
Q ss_pred HHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 169 IAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 169 ~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
..+-+||+|++.+|+++|+|||+ |+.+...+++.|+++.+..+.++++++||...+...
T Consensus 174 ~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~ 235 (520)
T TIGR03269 174 KQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235 (520)
T ss_pred HHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 11122999999999999999998 999999999999999776688999999998877653
No 309
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.79 E-value=3.7e-19 Score=173.85 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=100.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCCChhHHHH----HHHhccc--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTFRAAAYEQ----LLILGKY-------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~~~~~~~q----l~~~~~~-------- 152 (302)
++++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.|.++......+. +.++.+.
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELS 94 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCc
Confidence 478999999999999999999999999999999999986 79999998876532111000 0011111
Q ss_pred ---------------------------------CCCCeee--c-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 153 ---------------------------------NDVPVIS--E-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 153 ---------------------------------~~~~~~~--~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
.++.-.. . .......+..+-+||+|++.+|+++|+|||+ |+
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~ 174 (500)
T TIGR02633 95 VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTE 174 (500)
T ss_pred HHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 0000000 0 0001112222334999999999999999998 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.+...+++.|+++.+ .+.+++++|||...+...
T Consensus 175 ~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~ 207 (500)
T TIGR02633 175 KETEILLDIIRDLKA-HGVACVYISHKLNEVKAV 207 (500)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHh
Confidence 999999999999975 478999999998876653
No 310
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.78 E-value=3.2e-19 Score=181.26 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=97.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~---------- 153 (302)
++++++||++++|+.++|+||||||||||++.|+|+++|++|+|.++|.|...... ++++.+..|..
T Consensus 493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eN 572 (710)
T TIGR03796 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN 572 (710)
T ss_pred CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHH
Confidence 57899999999999999999999999999999999999999999999987632211 11111111110
Q ss_pred --------------------C-----------CC--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 154 --------------------D-----------VP--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 154 --------------------~-----------~~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+ .. +-.........+..+-+||||+.++|+++|+|||+ |..+..
T Consensus 573 i~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~ 652 (710)
T TIGR03796 573 LTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK 652 (710)
T ss_pred hhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHH
Confidence 0 00 00011112223444445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|.+ .++|+++++|+...+
T Consensus 653 ~i~~~l~~----~~~T~IiitHrl~~i 675 (710)
T TIGR03796 653 IIDDNLRR----RGCTCIIVAHRLSTI 675 (710)
T ss_pred HHHHHHHh----cCCEEEEEecCHHHH
Confidence 99888875 378999999976543
No 311
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.1e-19 Score=177.98 Aligned_cols=137 Identities=15% Similarity=0.011 Sum_probs=95.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--------CC---C--hhHHHH-------H
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--------TF---R--AAAYEQ-------L 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--------~~---~--~~~~~q-------l 146 (302)
.+++++||++.+|++++|+||||||||||+++|+|.++|++|+|.+.+.. .. + .+...+ +
T Consensus 15 ~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l 94 (638)
T PRK10636 15 VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQL 94 (638)
T ss_pred eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHH
Confidence 57899999999999999999999999999999999999999999886642 10 0 111110 0
Q ss_pred H-------------Hh----------------------cccCCCC--eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEc
Q psy2881 147 L-------------IL----------------------GKYNDVP--VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVD 188 (302)
Q Consensus 147 ~-------------~~----------------------~~~~~~~--~~~-~~~~~~~~~~~~~~la~al~~~~~llllD 188 (302)
. .+ ...+++. ... ........+..+-+||++++.+|++||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLD 174 (638)
T PRK10636 95 EAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLD 174 (638)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEc
Confidence 0 00 0001110 000 00111223344456999999999999999
Q ss_pred CCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 189 TSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 189 EP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
||+ |+.+...+.+.|.++ +.+++++|||..++...
T Consensus 175 EPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~ 212 (638)
T PRK10636 175 EPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPI 212 (638)
T ss_pred CCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHh
Confidence 998 888888777777665 46899999998876543
No 312
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.78 E-value=4.5e-19 Score=179.69 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=99.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY----------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~----------- 152 (302)
++++++||++++|+.++|+||||||||||++.|+|+++|++|+|.++|.|+..... ++++.+..|.
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eN 558 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN 558 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHH
Confidence 47899999999999999999999999999999999999999999999987643211 1111111111
Q ss_pred -------------------CCC-------C------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 153 -------------------NDV-------P------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 153 -------------------~~~-------~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.++ | .-.........+..+-+||||+.++|+++|+|||| |+.+..
T Consensus 559 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~ 638 (694)
T TIGR03375 559 IALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE 638 (694)
T ss_pred HhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 000 0 00011112233444556999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeeh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+++.|.++.+ ++|+++++|+...
T Consensus 639 ~i~~~l~~~~~--~~T~iiItHrl~~ 662 (694)
T TIGR03375 639 RFKDRLKRWLA--GKTLVLVTHRTSL 662 (694)
T ss_pred HHHHHHHHHhC--CCEEEEEecCHHH
Confidence 99999988753 6789999997654
No 313
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.1e-19 Score=159.89 Aligned_cols=138 Identities=10% Similarity=0.064 Sum_probs=95.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCC----hh--H-HHHHHHhcccC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFR----AA--A-YEQLLILGKYN- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~----~~--~-~~ql~~~~~~~- 153 (302)
++++++||++++|++++|+||||||||||+++|+|+++| ++|+|.+.|.+... .. . ...+.+..+..
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 578999999999999999999999999999999999875 68999998754320 00 0 00000001100
Q ss_pred ------------------------------------CCC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881 154 ------------------------------------DVP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 154 ------------------------------------~~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~ 191 (302)
++. .. .........+..+-+|++|++.+|+++|+|||+
T Consensus 110 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 189 (265)
T PRK14252 110 PFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPT 189 (265)
T ss_pred CCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 000 00 000001112222334999999999999999997
Q ss_pred ---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|..+...+.+.|.++.+ +.++++++|+...+..
T Consensus 190 ~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~ 225 (265)
T PRK14252 190 SALDPIATASIEELISDLKN--KVTILIVTHNMQQAAR 225 (265)
T ss_pred ccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHH
Confidence 99999999999999864 5789999998776544
No 314
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.9e-19 Score=158.76 Aligned_cols=139 Identities=12% Similarity=0.118 Sum_probs=96.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--h---CCCeEEEecccCCCh---------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--K---RKKSVLLAACDTFRA--------------------- 140 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~---~~g~V~l~~~d~~~~--------------------- 140 (302)
++++++||++.+|++++|+||||||||||+++|+|+++ | ++|+|.+.|.++...
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF 98 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccC
Confidence 47899999999999999999999999999999999865 4 489999988765310
Q ss_pred --hHHHHHHHhccc-------------------CCCC-----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 141 --AAYEQLLILGKY-------------------NDVP-----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 141 --~~~~ql~~~~~~-------------------~~~~-----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
...+.+...... .+.. ... ........+..+-+||+|++.+|+++|+|||+
T Consensus 99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~ 178 (252)
T PRK14255 99 PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSA 178 (252)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 011111100000 0000 000 00001112223334999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|..+...+.+.|.++.+ +.++++++|+...+...
T Consensus 179 LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~ 213 (252)
T PRK14255 179 LDPISSTQIENMLLELRD--QYTIILVTHSMHQASRI 213 (252)
T ss_pred CCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHh
Confidence 99999999999999865 47899999997765543
No 315
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6e-19 Score=161.94 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=97.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCChh----H-HHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRAA----A-YEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~~----~-~~ql~~~~~~~~~- 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+++ |++|+|.+.|.++.+.. . ...+.+..+...+
T Consensus 59 ~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 138 (305)
T PRK14264 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPF 138 (305)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccc
Confidence 47899999999999999999999999999999999986 58999999987653211 0 0111111111100
Q ss_pred --------Ceee----------------c------------------------------CCCCCHHHHHHHHHHHHHhCC
Q psy2881 156 --------PVIS----------------E------------------------------KKITDPAAIAFNAINIAQKKN 181 (302)
Q Consensus 156 --------~~~~----------------~------------------------------~~~~~~~~~~~~~la~al~~~ 181 (302)
.+.. . .......+..+-+||+|++++
T Consensus 139 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~ 218 (305)
T PRK14264 139 PKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVD 218 (305)
T ss_pred cccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcC
Confidence 0000 0 000011122223499999999
Q ss_pred CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 182 TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 182 ~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+++|+|||+ |+.+...+++.|+++++ +.++++++|+...+..
T Consensus 219 p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~ 264 (305)
T PRK14264 219 PEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAAR 264 (305)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHH
Confidence 9999999997 99999999999999876 3689999998776543
No 316
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.78 E-value=4.8e-19 Score=177.61 Aligned_cols=137 Identities=15% Similarity=0.065 Sum_probs=95.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--------C-CC-hhHHHH-H---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--------T-FR-AAAYEQ-L--------- 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--------~-~~-~~~~~q-l--------- 146 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.. . .. .....+ +
T Consensus 17 ~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~ 96 (635)
T PRK11147 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAE 96 (635)
T ss_pred eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHH
Confidence 57899999999999999999999999999999999999999999886521 0 00 000000 0
Q ss_pred ---------------------HHh----------------------cccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCC
Q psy2881 147 ---------------------LIL----------------------GKYNDVPVISEKKITDPAAIAFNAINIAQKKNTD 183 (302)
Q Consensus 147 ---------------------~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~ 183 (302)
..+ ...+++..-.........+..+-+||++++.+|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~ 176 (635)
T PRK11147 97 YLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPD 176 (635)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 000 0001111000001112233444569999999999
Q ss_pred eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 184 IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 184 llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
++|+|||+ |+.+...+.+.|+++ +.+++++|||..++...
T Consensus 177 lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~ 219 (635)
T PRK11147 177 VLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNM 219 (635)
T ss_pred EEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHh
Confidence 99999998 898888888888876 34889999998876543
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6.6e-19 Score=173.28 Aligned_cols=137 Identities=17% Similarity=0.121 Sum_probs=96.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc-C---------C-ChhHHHHH---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD-T---------F-RAAAYEQL--------- 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d-~---------~-~~~~~~ql--------- 146 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. + + .....+.+
T Consensus 15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 94 (530)
T PRK15064 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWE 94 (530)
T ss_pred EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHH
Confidence 57899999999999999999999999999999999999999999886521 0 0 00111111
Q ss_pred -----------------------------------------HHhcccCCCCeee---cCCCCCHHHHHHHHHHHHHhCCC
Q psy2881 147 -----------------------------------------LILGKYNDVPVIS---EKKITDPAAIAFNAINIAQKKNT 182 (302)
Q Consensus 147 -----------------------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~la~al~~~~ 182 (302)
..+.+..+++-.. ........+..+-+||++++.+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p 174 (530)
T PRK15064 95 VKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNP 174 (530)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCC
Confidence 0111112221100 01112233444556999999999
Q ss_pred CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 183 DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 183 ~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+++|+|||+ |+.+...+++.|.+ .+.++++++||..++...
T Consensus 175 ~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~ 218 (530)
T PRK15064 175 DILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSV 218 (530)
T ss_pred CEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhh
Confidence 999999998 88888888887753 478999999998876543
No 318
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.1e-18 Score=145.21 Aligned_cols=137 Identities=16% Similarity=0.104 Sum_probs=96.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC---------------------hhHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR---------------------AAAYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~---------------------~~~~~q 145 (302)
.++.++||++.+|+++.|.||||+|||||+++|||+.+|++|+|.+.+..+.. ..+.|.
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~EN 95 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALEN 95 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHH
Confidence 57889999999999999999999999999999999999999999999876532 234455
Q ss_pred HHHhcccCCC-C---e-----------eec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881 146 LLILGKYNDV-P---V-----------ISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK 205 (302)
Q Consensus 146 l~~~~~~~~~-~---~-----------~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~ 205 (302)
++.|....+- + . +.. -......+..+-+|||..+..+++.|+|||+ |......+-..+..
T Consensus 96 L~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~ 175 (209)
T COG4133 96 LHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA 175 (209)
T ss_pred HHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHH
Confidence 5555443321 0 0 000 0001122333445899999999999999997 76666655555555
Q ss_pred HHHHhchhhccccceeehh
Q psy2881 206 IKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 206 l~~~~~~~i~~~~hd~~lv 224 (302)
-+. .|..++.+||...-.
T Consensus 176 H~~-~GGiVllttHq~l~~ 193 (209)
T COG4133 176 HAA-QGGIVLLTTHQPLPI 193 (209)
T ss_pred Hhc-CCCEEEEecCCccCC
Confidence 443 466777889965543
No 319
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.78 E-value=9e-19 Score=172.95 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=100.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-----------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY----------------------- 143 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~----------------------- 143 (302)
++++++||++++|+.++|+||||||||||++.|+|+++|++|+|.++|.+.......
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 416 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE 416 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence 378899999999999999999999999999999999999999999999876422110
Q ss_pred ------HHHHHhcccCCCCeee--c-----CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881 144 ------EQLLILGKYNDVPVIS--E-----KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK 207 (302)
Q Consensus 144 ------~ql~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~ 207 (302)
+.+..+.+..+..... . .......+..+-+||||++++|+++|+|||+ |+.+...+++.+.+..
T Consensus 417 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 496 (547)
T PRK10522 417 GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLL 496 (547)
T ss_pred cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 1111111111211110 0 1122334555566999999999999999998 8888888888887665
Q ss_pred HHhchhhccccceee
Q psy2881 208 KVIEKKIFELPYEIF 222 (302)
Q Consensus 208 ~~~~~~i~~~~hd~~ 222 (302)
+..++|+++++|+..
T Consensus 497 ~~~~~tvi~itH~~~ 511 (547)
T PRK10522 497 QEMGKTIFAISHDDH 511 (547)
T ss_pred HhCCCEEEEEEechH
Confidence 444789999999754
No 320
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.78 E-value=5.4e-19 Score=179.51 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=97.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q 145 (302)
++++|+||++++|+.++|+|||||||||+++.|+|++.|++|+|.++|.|..... .+++
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 567 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN 567 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence 5789999999999999999999999999999999999999999999998753211 1111
Q ss_pred HHHh-------------cccCCC-----------C--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 146 LLIL-------------GKYNDV-----------P--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 146 l~~~-------------~~~~~~-----------~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
+... .+..++ . +-.........+..+-+||||+.++|+++|+|||| |..+.
T Consensus 568 i~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te 647 (708)
T TIGR01193 568 LLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647 (708)
T ss_pred HhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHH
Confidence 1111 000000 0 00011112233444455999999999999999998 89999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
..+++.|.++ .++|+++++|+...
T Consensus 648 ~~i~~~L~~~---~~~T~IiitHr~~~ 671 (708)
T TIGR01193 648 KKIVNNLLNL---QDKTIIFVAHRLSV 671 (708)
T ss_pred HHHHHHHHHh---cCCEEEEEecchHH
Confidence 9999999874 36789999997654
No 321
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=6.4e-19 Score=174.88 Aligned_cols=135 Identities=13% Similarity=0.155 Sum_probs=99.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---------------------HHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---------------------YEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---------------------~~q 145 (302)
++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+..... .+.
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 433 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN 433 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHH
Confidence 47899999999999999999999999999999999999999999999987542211 111
Q ss_pred HH------------HhcccCCCC-eee-----------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 146 LL------------ILGKYNDVP-VIS-----------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 146 l~------------~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+. ...+..++. +.. ........+..+-+||||++++|+++|+|||+ |+.+...
T Consensus 434 i~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~ 513 (574)
T PRK11160 434 LLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ 513 (574)
T ss_pred hhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 11 111111111 000 01112234455556999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeeh
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
+++.|.++. .++|+++++|+...
T Consensus 514 i~~~l~~~~--~~~tviiitHr~~~ 536 (574)
T PRK11160 514 ILELLAEHA--QNKTVLMITHRLTG 536 (574)
T ss_pred HHHHHHHHc--CCCEEEEEecChhH
Confidence 999998875 36899999997654
No 322
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.77 E-value=8.9e-19 Score=170.79 Aligned_cols=140 Identities=12% Similarity=0.023 Sum_probs=96.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCCh-h---HHHHHHHhcccCCC------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRA-A---AYEQLLILGKYNDV------ 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~-~---~~~ql~~~~~~~~~------ 155 (302)
.+++++||++.+|++++|+||||||||||+++|+|+.++ ++|+|.+.|.+.... . ....+.++.+....
T Consensus 274 ~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 353 (490)
T PRK10938 274 PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVST 353 (490)
T ss_pred eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCC
Confidence 368899999999999999999999999999999998765 689999998654210 0 01111111111000
Q ss_pred --------Ceee--cCC---C---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 156 --------PVIS--EKK---I---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 156 --------~~~~--~~~---~---------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d 192 (302)
.+.. ... . ....+..+-+||+|++.+|+++|+|||+ |
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD 433 (490)
T PRK10938 354 SVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433 (490)
T ss_pred cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 0000 000 0 0001112223999999999999999997 9
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+...+++.|.++++..+.+++++|||...+..
T Consensus 434 ~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 434 PLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh
Confidence 9999999999999987534468999999877644
No 323
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.5e-19 Score=157.16 Aligned_cols=139 Identities=12% Similarity=0.115 Sum_probs=96.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh-----hHHHHHHHhcccCCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA-----AAYEQLLILGKYNDV- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~-----~~~~ql~~~~~~~~~- 155 (302)
++++++||++.+|++++|+||||||||||+++|+|+.. |++|+|.++|.++... .....+.+..+...+
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPF 96 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccC
Confidence 57899999999999999999999999999999999864 3789999999775321 001111111111000
Q ss_pred --------Ceeec----------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 156 --------PVISE----------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 156 --------~~~~~----------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
.+... .......+..+-+||+|++.+|+++|+|||+
T Consensus 97 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~g 176 (250)
T PRK14266 97 PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176 (250)
T ss_pred cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCcc
Confidence 00000 0001112222233999999999999999997
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|..+...+.+.|.++.+ +.++++++|+...+...
T Consensus 177 LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~~~~ 211 (250)
T PRK14266 177 LDPISTTKIEDLIHKLKE--DYTIVIVTHNMQQATRV 211 (250)
T ss_pred CCHHHHHHHHHHHHHHhc--CCeEEEEECCHHHHHhh
Confidence 99999999999998853 67999999987665443
No 324
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.77 E-value=8.7e-19 Score=173.81 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=98.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY----------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~----------- 152 (302)
++++++||++++|+.++|+|+||||||||++.|+|+++|++|+|.++|.+...... .+++.+..|.
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 425 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN 425 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHH
Confidence 47899999999999999999999999999999999999999999999976432111 0111111111
Q ss_pred --------------------CCC-----------C--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 153 --------------------NDV-----------P--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 153 --------------------~~~-----------~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
.++ . +-.........++.+-+||||+.++|+++|+|||+ |..+.
T Consensus 426 i~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~ 505 (571)
T TIGR02203 426 IAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505 (571)
T ss_pred HhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 010 0 00011112334455556999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
+.+++.|.++.+ +++++++||+...
T Consensus 506 ~~i~~~L~~~~~--~~tiIiitH~~~~ 530 (571)
T TIGR02203 506 RLVQAALERLMQ--GRTTLVIAHRLST 530 (571)
T ss_pred HHHHHHHHHHhC--CCEEEEEehhhHH
Confidence 999999988743 5799999998654
No 325
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=9.2e-19 Score=144.17 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=101.7
Q ss_pred HHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc-----CCChhHHHHH------
Q psy2881 80 LLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD-----TFRAAAYEQL------ 146 (302)
Q Consensus 80 ~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d-----~~~~~~~~ql------ 146 (302)
.+.+.+.+ -.+++||++.|||+.+|+|.+|||||||+++|++.+.|+.|.|.+...+ ++..+..+.-
T Consensus 11 ~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTe 90 (258)
T COG4107 11 GLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTE 90 (258)
T ss_pred hhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhc
Confidence 34455543 4689999999999999999999999999999999999999999998744 3322221111
Q ss_pred -HHhcccC--CCCeeecC---------------CC--------------------------CCHHHHHHHHHHHHHhCCC
Q psy2881 147 -LILGKYN--DVPVISEK---------------KI--------------------------TDPAAIAFNAINIAQKKNT 182 (302)
Q Consensus 147 -~~~~~~~--~~~~~~~~---------------~~--------------------------~~~~~~~~~~la~al~~~~ 182 (302)
...-+.. ++...... ++ ..-....+-.|||-++..|
T Consensus 91 WG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~P 170 (258)
T COG4107 91 WGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRP 170 (258)
T ss_pred cceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCC
Confidence 1111110 00000000 00 0001111122999999999
Q ss_pred CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 183 DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 183 ~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.++++|||+ |..-++.+++.++.+....+.++++++||+..
T Consensus 171 rLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V 214 (258)
T COG4107 171 RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV 214 (258)
T ss_pred ceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH
Confidence 999999997 88999999999999999999999999998764
No 326
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.77 E-value=1e-18 Score=174.02 Aligned_cols=135 Identities=18% Similarity=0.220 Sum_probs=98.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~--------- 154 (302)
++++++|+++++|+.++|+|+||||||||++.|+|+++|++|.|.++|.++...... .++.+..+...
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N 428 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDN 428 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHH
Confidence 478999999999999999999999999999999999999999999999775432111 11111111100
Q ss_pred --------------------------------CCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 --------------------------------VPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 --------------------------------~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.... .........+..+-+||||+.++|+++|+|||+ |+.+..
T Consensus 429 i~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~ 508 (588)
T PRK13657 429 IRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEA 508 (588)
T ss_pred HhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 0000 000112223444455999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeeh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+++.|.++.+ ++|++++||+...
T Consensus 509 ~i~~~l~~~~~--~~tvIiitHr~~~ 532 (588)
T PRK13657 509 KVKAALDELMK--GRTTFIIAHRLST 532 (588)
T ss_pred HHHHHHHHHhc--CCEEEEEEecHHH
Confidence 99999987743 6899999997654
No 327
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.3e-18 Score=164.75 Aligned_cols=135 Identities=14% Similarity=0.127 Sum_probs=102.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYNDV-------- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~~-------- 155 (302)
++++|+||++.+||.++|+|++||||||++..|+|.+.|++|+|.++|.++..... ++++....|+.++
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N 431 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDN 431 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999988753322 3334333333221
Q ss_pred -Ce--------------------------------e--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 156 -PV--------------------------------I--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 156 -~~--------------------------------~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.. + ....+..-.+..+-+|||++.++.+++|+|||| |+.+..
T Consensus 432 L~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~ 511 (573)
T COG4987 432 LRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511 (573)
T ss_pred HhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHH
Confidence 00 0 000011112333345999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeeh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
++++.|.+-.+ ++|++++||+...
T Consensus 512 ~vL~ll~~~~~--~kTll~vTHrL~~ 535 (573)
T COG4987 512 QVLALLFEHAE--GKTLLMVTHRLRG 535 (573)
T ss_pred HHHHHHHHHhc--CCeEEEEeccccc
Confidence 99999987664 8899999996543
No 328
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.77 E-value=1.4e-18 Score=171.42 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=97.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~--------- 154 (302)
++++++||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.+....... ..+.+..+...
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 411 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN 411 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHH
Confidence 478899999999999999999999999999999999999999999998775322110 01111111100
Q ss_pred ----------------------------C----Cee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 ----------------------------V----PVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 ----------------------------~----~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+ ... .........+..+-+||||+.++|+++|+|||+ |..+..
T Consensus 412 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~ 491 (544)
T TIGR01842 412 IARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491 (544)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHH
Confidence 0 000 000111223344445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceee
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
.+++.|.++.. .++++++++|+..
T Consensus 492 ~i~~~l~~~~~-~~~tvi~ith~~~ 515 (544)
T TIGR01842 492 ALANAIKALKA-RGITVVVITHRPS 515 (544)
T ss_pred HHHHHHHHHhh-CCCEEEEEeCCHH
Confidence 99999988753 3678999999754
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.77 E-value=1.5e-18 Score=171.68 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=97.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HH------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQ------------------ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~q------------------ 145 (302)
++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.++...... .+
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 435 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD 435 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence 378899999999999999999999999999999999999999999999876432211 11
Q ss_pred ---------HHHhcccCCCCeee-c---C----CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881 146 ---------LLILGKYNDVPVIS-E---K----KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK 205 (302)
Q Consensus 146 ---------l~~~~~~~~~~~~~-~---~----~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~ 205 (302)
+..+.+..++.-+. . . ......+..+-+||||++.+|+++|+|||+ |+.+...+.+.+.+
T Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~ 515 (555)
T TIGR01194 436 EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515 (555)
T ss_pred cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 11111111111000 0 0 112223444456999999999999999998 88888888776653
Q ss_pred HHHHhchhhccccceee
Q psy2881 206 IKKVIEKKIFELPYEIF 222 (302)
Q Consensus 206 l~~~~~~~i~~~~hd~~ 222 (302)
.....++|+++++|+..
T Consensus 516 ~~~~~~~tiiiisH~~~ 532 (555)
T TIGR01194 516 DLKRQGKTIIIISHDDQ 532 (555)
T ss_pred HHHhCCCEEEEEeccHH
Confidence 22334789999999754
No 330
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.77 E-value=1.3e-18 Score=172.61 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=97.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q 145 (302)
++++++||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.+..... ..+.
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 408 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN 408 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHH
Confidence 4788999999999999999999999999999999999999999999987653211 1111
Q ss_pred HHHh------------cccCCC-------C----ee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 146 LLIL------------GKYNDV-------P----VI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 146 l~~~------------~~~~~~-------~----~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+... .+..++ | .. .........+..+-+||||++++|+++|+|||+ |+.+..
T Consensus 409 i~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~ 488 (569)
T PRK10789 409 IALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEH 488 (569)
T ss_pred HhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence 1100 000000 0 00 000112223444456999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeeh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+++.|.++. .++|+++++|+...
T Consensus 489 ~i~~~l~~~~--~~~tii~itH~~~~ 512 (569)
T PRK10789 489 QILHNLRQWG--EGRTVIISAHRLSA 512 (569)
T ss_pred HHHHHHHHHh--CCCEEEEEecchhH
Confidence 9999998874 37899999997643
No 331
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=9.6e-19 Score=172.13 Aligned_cols=137 Identities=16% Similarity=0.124 Sum_probs=97.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--------C---C--ChhHHHHHHHh----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--------T---F--RAAAYEQLLIL---- 149 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--------~---~--~~~~~~ql~~~---- 149 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. . + .....+.+..+
T Consensus 333 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~ 412 (530)
T PRK15064 333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEG 412 (530)
T ss_pred eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCC
Confidence 47889999999999999999999999999999999999999999876521 1 0 01222222211
Q ss_pred ---------cccCCCC--eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhh
Q psy2881 150 ---------GKYNDVP--VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKI 214 (302)
Q Consensus 150 ---------~~~~~~~--~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i 214 (302)
...+++. ... ........+..+-+||++++.+|+++|+|||+ |+.+...+++.|.++ +.++
T Consensus 413 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tv 488 (530)
T PRK15064 413 DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTL 488 (530)
T ss_pred ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEE
Confidence 1112221 000 01111223444556999999999999999998 888888888888776 3589
Q ss_pred ccccceeehhhcC
Q psy2881 215 FELPYEIFLIIDG 227 (302)
Q Consensus 215 ~~~~hd~~lvl~~ 227 (302)
+++|||..++...
T Consensus 489 i~vsHd~~~~~~~ 501 (530)
T PRK15064 489 IFVSHDREFVSSL 501 (530)
T ss_pred EEEeCCHHHHHHh
Confidence 9999998775543
No 332
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.76 E-value=1.7e-18 Score=157.11 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=94.0
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------cC--CChhHHHHHHHh--------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------DT--FRAAAYEQLLIL-------- 149 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d~--~~~~~~~ql~~~-------- 149 (302)
+++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. +. +.....+.+...
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~ 129 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRY 129 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHH
Confidence 45899999999999999999999999999999999999999999887541 11 111111111110
Q ss_pred ---cccCCC-------Ce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH-HHHHHH
Q psy2881 150 ---GKYNDV-------PV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL-KKIKKV 209 (302)
Q Consensus 150 ---~~~~~~-------~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L-~~l~~~ 209 (302)
....++ +. . .........+..+-+||++++.+|+++|+|||+ |+.....+++.+ ..+.
T Consensus 130 ~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-- 207 (282)
T cd03291 130 KSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-- 207 (282)
T ss_pred HHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--
Confidence 000111 00 0 000122344555566999999999999999997 888777777754 4443
Q ss_pred hchhhccccceeehh
Q psy2881 210 IEKKIFELPYEIFLI 224 (302)
Q Consensus 210 ~~~~i~~~~hd~~lv 224 (302)
.+.++++++|+...+
T Consensus 208 ~~~tIiiisH~~~~~ 222 (282)
T cd03291 208 ANKTRILVTSKMEHL 222 (282)
T ss_pred CCCEEEEEeCChHHH
Confidence 267899999986653
No 333
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.76 E-value=1.6e-18 Score=172.18 Aligned_cols=135 Identities=14% Similarity=0.171 Sum_probs=98.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY----------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~----------- 152 (302)
++++++||++++|+.++|+||||||||||++.|+|+++|++|+|.++|.+...... ++++.+..+.
T Consensus 354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N 433 (576)
T TIGR02204 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMEN 433 (576)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHH
Confidence 47899999999999999999999999999999999999999999999876432111 0111111111
Q ss_pred -------------------CC-----------CCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 153 -------------------ND-----------VPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 153 -------------------~~-----------~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.+ .... .........+..+-++|||+.++|+++|+|||+ |+.+..
T Consensus 434 i~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~ 513 (576)
T TIGR02204 434 IRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQ 513 (576)
T ss_pred HhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHH
Confidence 00 0000 001112223444456999999999999999998 888888
Q ss_pred HHHHHHHHHHHHhchhhccccceeeh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+++.|+++.+ +++++++||+...
T Consensus 514 ~i~~~l~~~~~--~~t~IiitH~~~~ 537 (576)
T TIGR02204 514 LVQQALETLMK--GRTTLIIAHRLAT 537 (576)
T ss_pred HHHHHHHHHhC--CCEEEEEecchHH
Confidence 89999988753 6899999997654
No 334
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.76 E-value=1.8e-18 Score=172.08 Aligned_cols=136 Identities=17% Similarity=0.179 Sum_probs=97.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~---------- 153 (302)
++++++||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.+...... .+++.+..+..
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 428 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIREN 428 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHH
Confidence 36889999999999999999999999999999999999999999999876532111 00111111110
Q ss_pred --------------------C-------CC------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 154 --------------------D-------VP------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 154 --------------------~-------~~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+ .| .-.........+..+-+||||++.+|+++|+|||+ |..+..
T Consensus 429 i~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~ 508 (585)
T TIGR01192 429 IRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA 508 (585)
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence 0 00 00000111223344445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|.++. .++++++++|+...+
T Consensus 509 ~i~~~l~~~~--~~~tvI~isH~~~~~ 533 (585)
T TIGR01192 509 RVKNAIDALR--KNRTTFIIAHRLSTV 533 (585)
T ss_pred HHHHHHHHHh--CCCEEEEEEcChHHH
Confidence 9999998774 378999999986554
No 335
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.76 E-value=2.2e-18 Score=174.72 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=99.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhccc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKY----------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~----------- 152 (302)
++++++||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.|....... .++.+..+.
T Consensus 471 ~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eN 550 (694)
T TIGR01846 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDN 550 (694)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHH
Confidence 478999999999999999999999999999999999999999999999876432111 111111111
Q ss_pred -------------------CC-----------CCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 153 -------------------ND-----------VPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 153 -------------------~~-----------~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.+ .... .........+..+-+||||++++|+++|+|||+ |+.+..
T Consensus 551 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~ 630 (694)
T TIGR01846 551 IALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA 630 (694)
T ss_pred HhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHH
Confidence 00 0000 001112233444445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|.++. .++|+++++|+...+
T Consensus 631 ~i~~~l~~~~--~~~t~i~itH~~~~~ 655 (694)
T TIGR01846 631 LIMRNMREIC--RGRTVIIIAHRLSTV 655 (694)
T ss_pred HHHHHHHHHh--CCCEEEEEeCChHHH
Confidence 9999998874 368999999976543
No 336
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.76 E-value=1.2e-18 Score=176.84 Aligned_cols=133 Identities=18% Similarity=0.207 Sum_probs=93.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY----------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~----------- 152 (302)
++++|+||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.|+..... ++++.+..|.
T Consensus 495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreN 574 (711)
T TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVREN 574 (711)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHH
Confidence 47899999999999999999999999999999999999999999999987532111 1111111111
Q ss_pred -------------------CCC-----------C--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 153 -------------------NDV-----------P--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 153 -------------------~~~-----------~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.++ . .-.........++.+-+||||+.++|+++|+|||+ |..+..
T Consensus 575 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~ 654 (711)
T TIGR00958 575 IAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQ 654 (711)
T ss_pred HhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHH
Confidence 000 0 00001112234444556999999999999999998 887776
Q ss_pred HHHHHHHHHHHHhchhhccccceeeh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+.+ .. ...++|+++++|+...
T Consensus 655 ~i~~-~~---~~~~~TvIiItHrl~~ 676 (711)
T TIGR00958 655 LLQE-SR---SRASRTVLLIAHRLST 676 (711)
T ss_pred HHHH-hh---ccCCCeEEEEeccHHH
Confidence 6665 21 2246899999997543
No 337
>PRK13409 putative ATPase RIL; Provisional
Probab=99.76 E-value=7.3e-19 Score=174.27 Aligned_cols=140 Identities=19% Similarity=0.150 Sum_probs=99.9
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe------cccC---CChhHHHHHHHh----------
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA------ACDT---FRAAAYEQLLIL---------- 149 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~------~~d~---~~~~~~~ql~~~---------- 149 (302)
++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+. -++. ......+.+...
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 434 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYK 434 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHH
Confidence 567888899999999999999999999999999999999999763 1111 011122222111
Q ss_pred ---cccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 150 ---GKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 150 ---~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
.+.+++.-.. ........+..+-+||+|++.+|+++|+|||+ |..+...+++.|+++++..+.++++++||.
T Consensus 435 ~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~ 514 (590)
T PRK13409 435 SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 (590)
T ss_pred HHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 1111111000 00112223444556999999999999999998 999999999999999877688999999998
Q ss_pred ehhhcCC
Q psy2881 222 FLIIDGN 228 (302)
Q Consensus 222 ~lvl~~~ 228 (302)
.++...+
T Consensus 515 ~~~~~~a 521 (590)
T PRK13409 515 YMIDYIS 521 (590)
T ss_pred HHHHHhC
Confidence 8766544
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.4e-18 Score=174.15 Aligned_cols=138 Identities=15% Similarity=0.126 Sum_probs=96.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc-cC----CC--------hhHHHHHH------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC-DT----FR--------AAAYEQLL------ 147 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~-d~----~~--------~~~~~ql~------ 147 (302)
.+++++||++.+|++++|+||||||||||+++|+|.++|++|+|.+.+. .+ +. ....+.+.
T Consensus 326 ~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~ 405 (638)
T PRK10636 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQE 405 (638)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchh
Confidence 4789999999999999999999999999999999999999999987421 10 00 00111111
Q ss_pred ------HhcccCCCCe--e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhc
Q psy2881 148 ------ILGKYNDVPV--I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIF 215 (302)
Q Consensus 148 ------~~~~~~~~~~--~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~ 215 (302)
.+...+++.- . .........+..+-+||++++.+|+++|||||+ |+.+...+.+.|.++ +.+++
T Consensus 406 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~gtvi 481 (638)
T PRK10636 406 LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALV 481 (638)
T ss_pred hHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCeEE
Confidence 1111112210 0 000111223344456999999999999999998 999999999998877 34899
Q ss_pred cccceeehhhcCC
Q psy2881 216 ELPYEIFLIIDGN 228 (302)
Q Consensus 216 ~~~hd~~lvl~~~ 228 (302)
++|||..++...+
T Consensus 482 ~vSHd~~~~~~~~ 494 (638)
T PRK10636 482 VVSHDRHLLRSTT 494 (638)
T ss_pred EEeCCHHHHHHhC
Confidence 9999988765543
No 339
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.76 E-value=2.4e-18 Score=170.58 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=98.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~---------- 153 (302)
++++|+||++++|+.++|+|||||||||+++.|++++.|++|+|.++|.|+...... +++....|..
T Consensus 343 ~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~N 422 (567)
T COG1132 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422 (567)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHH
Confidence 578899999999999999999999999999999999999999999988886432211 1111111110
Q ss_pred -------------------------------CCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 154 -------------------------------DVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 154 -------------------------------~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
|..... ........++.+-+||||++++|+++++|||| |..+..
T Consensus 423 I~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~ 502 (567)
T COG1132 423 IALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA 502 (567)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence 000011 11112234455556999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeeh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+.+.+.++.+ ++|+++++|....
T Consensus 503 ~I~~~l~~l~~--~rT~iiIaHRlst 526 (567)
T COG1132 503 LIQDALKKLLK--GRTTLIIAHRLST 526 (567)
T ss_pred HHHHHHHHHhc--CCEEEEEeccHhH
Confidence 99999987763 4677889997643
No 340
>KOG0055|consensus
Probab=99.76 E-value=2.3e-18 Score=176.67 Aligned_cols=138 Identities=20% Similarity=0.196 Sum_probs=99.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhccc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKY----------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~----------- 152 (302)
++++++||.+++|+.++|||||||||||++..|.++|.|++|+|.++|.|....... .++..+.|.
T Consensus 367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eN 446 (1228)
T KOG0055|consen 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIREN 446 (1228)
T ss_pred hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHH
Confidence 478899999999999999999999999999999999999999999999997532210 111111111
Q ss_pred --------------------------------CCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 153 --------------------------------NDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 153 --------------------------------~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
++..+-.......-.++.+-+||||++++|++||||||| |+.+..
T Consensus 447 I~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~ 526 (1228)
T KOG0055|consen 447 IRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESER 526 (1228)
T ss_pred HhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHH
Confidence 000000000011122333445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+.+.|.+..+ |+|.++++|.+-.+-.
T Consensus 527 ~Vq~ALd~~~~--grTTivVaHRLStIrn 553 (1228)
T KOG0055|consen 527 VVQEALDKASK--GRTTIVVAHRLSTIRN 553 (1228)
T ss_pred HHHHHHHHhhc--CCeEEEEeeehhhhhc
Confidence 99999987753 6788889996654443
No 341
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.3e-18 Score=161.14 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=97.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A------------------ 141 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~------------------ 141 (302)
++++++||++.+|++++|+||||||||||+++|+|+.. |++|+|.++|.++... .
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 47999999999999999999999999999999999986 4689999998876310 0
Q ss_pred ---HHHHHHHhc-------------------ccCCCC------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881 142 ---AYEQLLILG-------------------KYNDVP------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-- 191 (302)
Q Consensus 142 ---~~~ql~~~~-------------------~~~~~~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-- 191 (302)
..+.+.... +..++. .-.........+..+-+||||++.+|+++|+|||+
T Consensus 176 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~ 255 (329)
T PRK14257 176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255 (329)
T ss_pred CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 011111000 000000 00000001112233334999999999999999998
Q ss_pred -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+.+.|+++.+ +.|+++++|++..+.+
T Consensus 256 LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~ 289 (329)
T PRK14257 256 LDPIATAKIEELILELKK--KYSIIIVTHSMAQAQR 289 (329)
T ss_pred CCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH
Confidence 99999999999988864 5799999998777655
No 342
>KOG0057|consensus
Probab=99.75 E-value=2.1e-18 Score=163.45 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=100.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY----------- 152 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~----------- 152 (302)
++++++||++++|+-++|+|+|||||||.++.|.+++. .+|+|+++|+|+..... +.-+.+.+|.
T Consensus 366 ~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N 444 (591)
T KOG0057|consen 366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN 444 (591)
T ss_pred ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence 38899999999999999999999999999999999999 89999999999753221 1111111111
Q ss_pred -------------------CCCC---------ee----ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 153 -------------------NDVP---------VI----SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 153 -------------------~~~~---------~~----~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.++. +. .......-.+..+-+++||++.+|+++++|||| |..+..
T Consensus 445 I~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~ 524 (591)
T KOG0057|consen 445 IKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETER 524 (591)
T ss_pred hhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHH
Confidence 1100 00 000000112233344999999999999999999 899999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
++++.+.+. ..++|++++-|+..++.++
T Consensus 525 ~i~~~i~~~--~~~rTvI~IvH~l~ll~~~ 552 (591)
T KOG0057|consen 525 EILDMIMDV--MSGRTVIMIVHRLDLLKDF 552 (591)
T ss_pred HHHHHHHHh--cCCCeEEEEEecchhHhcC
Confidence 999999883 3488999999988876554
No 343
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.75 E-value=2.1e-18 Score=187.40 Aligned_cols=139 Identities=16% Similarity=0.127 Sum_probs=101.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---------------------hHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---------------------AAYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---------------------~~~~q 145 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+. ...+.
T Consensus 1953 ~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~ 2032 (2272)
T TIGR01257 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREH 2032 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHH
Confidence 488999999999999999999999999999999999999999999999876321 11111
Q ss_pred HHHhcccCCCCe------------------eec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 146 LLILGKYNDVPV------------------ISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 146 l~~~~~~~~~~~------------------~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
+..++...+++- +.. .......++.+-.+|+|++.+|+++|+|||+ |+..+..+++.
T Consensus 2033 L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~l 2112 (2272)
T TIGR01257 2033 LYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNT 2112 (2272)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 211111111100 000 0000011112223999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhc
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|.++.+. |++++++||++..+..
T Consensus 2113 L~~l~~~-g~TIILtTH~mee~e~ 2135 (2272)
T TIGR01257 2113 IVSIIRE-GRAVVLTSHSMEECEA 2135 (2272)
T ss_pred HHHHHhC-CCEEEEEeCCHHHHHH
Confidence 9998765 8899999999877654
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.75 E-value=3.1e-18 Score=171.75 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=94.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC------C-------ChhHHHHHHHhcc--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT------F-------RAAAYEQLLILGK-- 151 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~------~-------~~~~~~ql~~~~~-- 151 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+ +.+. + .....+.+.....
T Consensus 333 ~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~ 411 (635)
T PRK11147 333 QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEV 411 (635)
T ss_pred EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccc
Confidence 4788999999999999999999999999999999999999999987 4321 0 0112222221100
Q ss_pred --------------cCCCCe--ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhc
Q psy2881 152 --------------YNDVPV--IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIE 211 (302)
Q Consensus 152 --------------~~~~~~--~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~ 211 (302)
.+++.- .. ........+..+-+||++++.+|++||+|||+ |+.+...+.+.|.++ +
T Consensus 412 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~ 487 (635)
T PRK11147 412 MVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----Q 487 (635)
T ss_pred cccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----C
Confidence 011100 00 00011223334445999999999999999998 888887777777665 4
Q ss_pred hhhccccceeehhhcC
Q psy2881 212 KKIFELPYEIFLIIDG 227 (302)
Q Consensus 212 ~~i~~~~hd~~lvl~~ 227 (302)
.+++++|||..++...
T Consensus 488 ~tvi~vSHd~~~~~~~ 503 (635)
T PRK11147 488 GTVLLVSHDRQFVDNT 503 (635)
T ss_pred CeEEEEECCHHHHHHh
Confidence 5899999998876543
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=99.74 E-value=2.2e-18 Score=170.90 Aligned_cols=148 Identities=15% Similarity=0.078 Sum_probs=101.8
Q ss_pred HHHHHHHHhh---ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-----------EecccCCChhH
Q psy2881 77 LHNLLVNLLK---SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-----------LAACDTFRAAA 142 (302)
Q Consensus 77 l~~~l~~~l~---~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-----------l~~~d~~~~~~ 142 (302)
+...+...+. .++++++ .+++|++++|+||||||||||+++|+|+++|+.|+|. +.|.++.....
T Consensus 75 ~~~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 75 LEEEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred hccCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 3444555554 2688999 8999999999999999999999999999999999997 66665421100
Q ss_pred ---------------HHH------------H---------HHhcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCe
Q psy2881 143 ---------------YEQ------------L---------LILGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDI 184 (302)
Q Consensus 143 ---------------~~q------------l---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~l 184 (302)
..+ + ..+.+.+++.-.. ........+..+-+||+|++.+|++
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~l 233 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADF 233 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 000 0 0000001110000 0000111223333499999999999
Q ss_pred EEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 185 VIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 185 lllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+|+|||+ |+.....+.+.|+++.+ +.++++++||...+...
T Consensus 234 llLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~ 277 (590)
T PRK13409 234 YFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYL 277 (590)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHh
Confidence 9999998 99999999999999875 88999999998766543
No 346
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.74 E-value=4.1e-18 Score=168.42 Aligned_cols=137 Identities=12% Similarity=0.066 Sum_probs=96.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cC---C-ChhHHHHHHHh-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DT---F-RAAAYEQLLIL----- 149 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~---~-~~~~~~ql~~~----- 149 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. +. + .....+.+...
T Consensus 336 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 415 (552)
T TIGR03719 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQ 415 (552)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccc
Confidence 4788999999999999999999999999999999999999999987321 11 1 11222332221
Q ss_pred -----------cccCCCCe-e-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhch
Q psy2881 150 -----------GKYNDVPV-I-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEK 212 (302)
Q Consensus 150 -----------~~~~~~~~-~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~ 212 (302)
...+++.- . . ........+..+-+||++++.+|+++|+|||+ |+.+...+++.|.++. +
T Consensus 416 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~- 491 (552)
T TIGR03719 416 LGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G- 491 (552)
T ss_pred cCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-
Confidence 11112210 0 0 01112233444556999999999999999998 9999999999888872 3
Q ss_pred hhccccceeehhhcC
Q psy2881 213 KIFELPYEIFLIIDG 227 (302)
Q Consensus 213 ~i~~~~hd~~lvl~~ 227 (302)
+++++|||..++...
T Consensus 492 ~viivsHd~~~~~~~ 506 (552)
T TIGR03719 492 CAVVISHDRWFLDRI 506 (552)
T ss_pred eEEEEeCCHHHHHHh
Confidence 788999998775543
No 347
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.74 E-value=5.9e-18 Score=167.26 Aligned_cols=137 Identities=13% Similarity=0.092 Sum_probs=96.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cC--C-ChhHHHHHHHh------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DT--F-RAAAYEQLLIL------ 149 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~--~-~~~~~~ql~~~------ 149 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. +. + .....+.+...
T Consensus 19 ~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~ 98 (552)
T TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKD 98 (552)
T ss_pred eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHH
Confidence 4789999999999999999999999999999999999999999987531 11 0 11222222110
Q ss_pred ------------------------------------------------cccCCCCeee-cCCCCCHHHHHHHHHHHHHhC
Q psy2881 150 ------------------------------------------------GKYNDVPVIS-EKKITDPAAIAFNAINIAQKK 180 (302)
Q Consensus 150 ------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~la~al~~ 180 (302)
....+++... ........+..+-+||++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~ 178 (552)
T TIGR03719 99 ALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLS 178 (552)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhc
Confidence 0001111000 001112334455569999999
Q ss_pred CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 181 NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 181 ~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+|+++|+|||+ |+.+...+.+.|.++ +.+++++|||..++...
T Consensus 179 ~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~ 224 (552)
T TIGR03719 179 KPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNV 224 (552)
T ss_pred CCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhh
Confidence 99999999998 999888888888765 34889999998766543
No 348
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=6.2e-18 Score=167.25 Aligned_cols=137 Identities=13% Similarity=0.080 Sum_probs=96.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cC--C-ChhHHHHHHHh------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DT--F-RAAAYEQLLIL------ 149 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~--~-~~~~~~ql~~~------ 149 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. +. + .....+.+...
T Consensus 21 ~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~ 100 (556)
T PRK11819 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKA 100 (556)
T ss_pred eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHH
Confidence 5789999999999999999999999999999999999999999987531 11 1 11222222110
Q ss_pred ------------------------------------------------cccCCCCeee-cCCCCCHHHHHHHHHHHHHhC
Q psy2881 150 ------------------------------------------------GKYNDVPVIS-EKKITDPAAIAFNAINIAQKK 180 (302)
Q Consensus 150 ------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~la~al~~ 180 (302)
.+..+++... ........+..+-+||+|++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~ 180 (556)
T PRK11819 101 ALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLE 180 (556)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhC
Confidence 0011111000 001112234445569999999
Q ss_pred CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 181 NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 181 ~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+|+++|+|||+ |+.+...+.+.|+++ +.+++++|||..++...
T Consensus 181 ~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~~~~ 226 (556)
T PRK11819 181 KPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFLDNV 226 (556)
T ss_pred CCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhh
Confidence 99999999998 998888888888876 24889999998776543
No 349
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.74 E-value=3.7e-18 Score=171.48 Aligned_cols=138 Identities=13% Similarity=0.095 Sum_probs=99.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH-------HHHhcccCCCC-ee
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ-------LLILGKYNDVP-VI 158 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q-------l~~~~~~~~~~-~~ 158 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......+. +.+..+..... ..
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 47899999999999999999999999999999999999999999999988654332211 01111111100 00
Q ss_pred e---------cCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 159 S---------EKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 159 ~---------~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
. ...... ..+..+-.||||++.+|+++|+|||+ |..+..
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~ 181 (648)
T PRK10535 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181 (648)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 0 000000 01111112999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
.+.+.|+++.+ .+.++++++|+...+-
T Consensus 182 ~l~~ll~~l~~-~g~tilivsH~~~~~~ 208 (648)
T PRK10535 182 EVMAILHQLRD-RGHTVIIVTHDPQVAA 208 (648)
T ss_pred HHHHHHHHHHh-cCCEEEEECCCHHHHH
Confidence 99999999865 4789999999887553
No 350
>PLN03211 ABC transporter G-25; Provisional
Probab=99.74 E-value=5.3e-18 Score=170.09 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=99.2
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC--CCeEEEecccCCC------------------hhHHHH
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACDTFR------------------AAAYEQ 145 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~--~g~V~l~~~d~~~------------------~~~~~q 145 (302)
+.+++++|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.+... ....+.
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 35899999999999999999999999999999999999875 8999999876421 011122
Q ss_pred HHHhc---------------------ccCCCCeee-----c--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881 146 LLILG---------------------KYNDVPVIS-----E--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS 194 (302)
Q Consensus 146 l~~~~---------------------~~~~~~~~~-----~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~ 194 (302)
+...+ +..++.-.. . .......++.+-.||++++.+|+++++|||+ |..
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~ 240 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 21110 011111000 0 0011222333445999999999999999997 999
Q ss_pred chHHHHHHHHHHHHHhchhhccccceee
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
+...+++.|+++++ .+.|+++++|+..
T Consensus 241 ~~~~l~~~L~~l~~-~g~TvI~~sH~~~ 267 (659)
T PLN03211 241 AAYRLVLTLGSLAQ-KGKTIVTSMHQPS 267 (659)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCCC
Confidence 99999999999986 4889999999876
No 351
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=5.9e-18 Score=167.39 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=96.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cC---C-ChhHHHHHHHh-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DT---F-RAAAYEQLLIL----- 149 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~---~-~~~~~~ql~~~----- 149 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. +. + .....+.+...
T Consensus 338 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 417 (556)
T PRK11819 338 LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIK 417 (556)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhccccc
Confidence 3788999999999999999999999999999999999999999987321 10 0 11222222211
Q ss_pred -----------cccCCCCe-e-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhch
Q psy2881 150 -----------GKYNDVPV-I-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEK 212 (302)
Q Consensus 150 -----------~~~~~~~~-~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~ 212 (302)
...+++.- . . ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|.++. +
T Consensus 418 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~- 493 (556)
T PRK11819 418 VGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---G- 493 (556)
T ss_pred ccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-
Confidence 11112210 0 0 00112223444456999999999999999998 9999999999888762 3
Q ss_pred hhccccceeehhhcCC
Q psy2881 213 KIFELPYEIFLIIDGN 228 (302)
Q Consensus 213 ~i~~~~hd~~lvl~~~ 228 (302)
+++++|||..++...+
T Consensus 494 tvi~vtHd~~~~~~~~ 509 (556)
T PRK11819 494 CAVVISHDRWFLDRIA 509 (556)
T ss_pred eEEEEECCHHHHHHhC
Confidence 7889999987655433
No 352
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.73 E-value=7.6e-18 Score=163.80 Aligned_cols=137 Identities=16% Similarity=0.104 Sum_probs=93.1
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cCCCh---hHH-----------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DTFRA---AAY----------- 143 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~~~~---~~~----------- 143 (302)
+++++++|+++.+|+.+||||+||+|||||+++|+|...|++|+|..... +.... ...
T Consensus 16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~ 95 (530)
T COG0488 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELR 95 (530)
T ss_pred ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHH
Confidence 46789999999999999999999999999999999999999998877542 22110 000
Q ss_pred ------HHHHH-------------------------------hcccCCCCee-ecCCCCCHHHHHHHHHHHHHhCCCCeE
Q psy2881 144 ------EQLLI-------------------------------LGKYNDVPVI-SEKKITDPAAIAFNAINIAQKKNTDIV 185 (302)
Q Consensus 144 ------~ql~~-------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~la~al~~~~~ll 185 (302)
+.+.. .-...+++.. .......-....+-+||+++..+||+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlL 175 (530)
T COG0488 96 ELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLL 175 (530)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 00000 0000111111 011112223455567999999999999
Q ss_pred EEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 186 IVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 186 llDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|||||| |..+...+-+.|+++ .| +++++|||..+.=.
T Consensus 176 LLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~ 215 (530)
T COG0488 176 LLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDN 215 (530)
T ss_pred EEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHH
Confidence 999999 777766666666654 24 89999999987543
No 353
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.73 E-value=4.1e-18 Score=185.13 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=99.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q 145 (302)
.+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ..+.
T Consensus 944 ~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~ 1023 (2272)
T TIGR01257 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEH 1023 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHH
Confidence 4789999999999999999999999999999999999999999999998764210 1111
Q ss_pred HHHhcccCC------------------CCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 146 LLILGKYND------------------VPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 146 l~~~~~~~~------------------~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
+..+....+ +.-.. ........++.+-+||+|++.+|++||+|||+ |+.++..+++.
T Consensus 1024 L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~l 1103 (2272)
T TIGR01257 1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL 1103 (2272)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 111110000 00000 00000111222223999999999999999997 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhc
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+++. .+.+++++||++..+..
T Consensus 1104 L~~l~--~g~TIIltTHdmdea~~ 1125 (2272)
T TIGR01257 1104 LLKYR--SGRTIIMSTHHMDEADL 1125 (2272)
T ss_pred HHHHh--CCCEEEEEECCHHHHHH
Confidence 99984 38899999999876644
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=99.73 E-value=7.4e-18 Score=170.18 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=94.5
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cCC---ChhHH-------------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DTF---RAAAY------------- 143 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~~---~~~~~------------- 143 (302)
+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. +.. .....
T Consensus 524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~ 603 (718)
T PLN03073 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 603 (718)
T ss_pred eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCC
Confidence 789999999999999999999999999999999999999999986432 110 00000
Q ss_pred -HHHHHhcccCCCCe-e-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcc
Q psy2881 144 -EQLLILGKYNDVPV-I-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFE 216 (302)
Q Consensus 144 -~ql~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~ 216 (302)
+.+..+...+++.- . . ........+..+-+||++++.+|++||+|||+ |+.+...+++.|.++ +.++++
T Consensus 604 ~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIi 679 (718)
T PLN03073 604 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLM 679 (718)
T ss_pred HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEE
Confidence 01111112222220 0 0 11122334555566999999999999999998 888888777777654 248999
Q ss_pred ccceeehhhcC
Q psy2881 217 LPYEIFLIIDG 227 (302)
Q Consensus 217 ~~hd~~lvl~~ 227 (302)
+|||..++...
T Consensus 680 vSHd~~~i~~~ 690 (718)
T PLN03073 680 VSHDEHLISGS 690 (718)
T ss_pred EECCHHHHHHh
Confidence 99998775443
No 355
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.73 E-value=1.4e-17 Score=156.52 Aligned_cols=133 Identities=17% Similarity=0.140 Sum_probs=99.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCCeeec---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVPVISE--- 160 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~~~~~--- 160 (302)
++++++||++.+|+.++||||+|||||||.+.|.|..+|.+|+|.++|.|+.++... +.+.|++|... .+..
T Consensus 350 pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe--LF~GTIa 427 (580)
T COG4618 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE--LFDGTIA 427 (580)
T ss_pred cceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce--ecCCcHH
Confidence 567899999999999999999999999999999999999999999999998765432 11222222211 1100
Q ss_pred ------CCCCCHHHH------------------------------------HHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 161 ------KKITDPAAI------------------------------------AFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 161 ------~~~~~~~~~------------------------------------~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
....|+.++ .+-++|||+-.+|.+++||||. |...
T Consensus 428 eNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~G 507 (580)
T COG4618 428 ENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEG 507 (580)
T ss_pred HHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhH
Confidence 001122222 2223999999999999999996 8888
Q ss_pred hHHHHHHHHHHHHHhchhhccccceee
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
...+.+.|...+.. |.++++++|...
T Consensus 508 E~AL~~Ai~~~k~r-G~~vvviaHRPs 533 (580)
T COG4618 508 EAALAAAILAAKAR-GGTVVVIAHRPS 533 (580)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEecCHH
Confidence 88999999998764 778888888443
No 356
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=1.8e-18 Score=144.76 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=93.5
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec-ccCCChhHHHHHHH-hcccCCCC---------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA-CDTFRAAAYEQLLI-LGKYNDVP--------- 156 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~-~d~~~~~~~~ql~~-~~~~~~~~--------- 156 (302)
+++++||++.+|+.-+||||||+||||++..|+|..+|+.|+|.+.| .|+.+....+-.+. .++.+..|
T Consensus 20 Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~ 99 (249)
T COG4674 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVR 99 (249)
T ss_pred eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHH
Confidence 67899999999999999999999999999999999999999999998 77654332211000 11111111
Q ss_pred ------------eeec---CCCCCHHHHHHHH--------------------------HHHHHhCCCCeEEEcCCC---C
Q psy2881 157 ------------VISE---KKITDPAAIAFNA--------------------------INIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 157 ------------~~~~---~~~~~~~~~~~~~--------------------------la~al~~~~~llllDEP~---d 192 (302)
++.. ....+....+.+. |.+.++++|+++++|||. -
T Consensus 100 eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMT 179 (249)
T COG4674 100 ENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMT 179 (249)
T ss_pred HHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCc
Confidence 1110 0001111111111 667788999999999995 2
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.......-+.|+.++. ..+++++.||+.+|-..+
T Consensus 180 d~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A 213 (249)
T COG4674 180 DAETEKTAELLKSLAG--KHSILVVEHDMGFVREIA 213 (249)
T ss_pred HHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhh
Confidence 2234456677777765 457889999999876554
No 357
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.73 E-value=9.1e-18 Score=180.68 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=99.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----------------------------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK----------------------------------------- 125 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----------------------------------------- 125 (302)
++++++||++++|+.++||||+||||||+++.|.|++.|
T Consensus 1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261 (1466)
T ss_pred ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 579999999999999999999999999999999999998
Q ss_pred -------------CCCeEEEecccCCChhH---HHHHHHhcccCC------------------------------C----
Q psy2881 126 -------------RKKSVLLAACDTFRAAA---YEQLLILGKYND------------------------------V---- 155 (302)
Q Consensus 126 -------------~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~------------------------------~---- 155 (302)
++|+|.++|.|+..... +.++.+..|... +
T Consensus 1262 ~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI 1341 (1466)
T PTZ00265 1262 KEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFI 1341 (1466)
T ss_pred cccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHH
Confidence 58999999988643221 112222222110 0
Q ss_pred ---C------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 156 ---P------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 156 ---~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
| +-.......-.++.+-+||||++++|++||||||| |..+.+.+++.|.++.+..++|+++++|.+.
T Consensus 1342 ~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls 1420 (1466)
T PTZ00265 1342 ESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA 1420 (1466)
T ss_pred HhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH
Confidence 0 00000111223344445999999999999999998 9999999999998875334789999999653
No 358
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.3e-17 Score=142.98 Aligned_cols=135 Identities=14% Similarity=0.120 Sum_probs=92.3
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEecccCCChhHHHHHHH--------hcccCCC
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAACDTFRAAAYEQLLI--------LGKYNDV 155 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~~d~~~~~~~~ql~~--------~~~~~~~ 155 (302)
+++++++|+++++||+.+|.||||||||||...|+|.- ..++|+|.+.|.|+......|..+. -.+..|+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 36789999999999999999999999999999999985 5789999999999864333222110 0000111
Q ss_pred Ce---ee----cCCC-----CCHHHHH----------------------------HHHHHHHHhCCCCeEEEcCC--C-C
Q psy2881 156 PV---IS----EKKI-----TDPAAIA----------------------------FNAINIAQKKNTDIVIVDTS--G-R 192 (302)
Q Consensus 156 ~~---~~----~~~~-----~~~~~~~----------------------------~~~la~al~~~~~llllDEP--~-d 192 (302)
.. .. .... .+....+ +.-|.+.++.+|++.||||| | |
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 00 00 0000 0000111 11177788999999999999 3 8
Q ss_pred ccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
..+-+.+-+.+..+... +.+++++||.-
T Consensus 177 Idalk~V~~~i~~lr~~-~~~~liITHy~ 204 (251)
T COG0396 177 IDALKIVAEGINALREE-GRGVLIITHYQ 204 (251)
T ss_pred HHHHHHHHHHHHHHhcC-CCeEEEEecHH
Confidence 77777777788887654 77888899953
No 359
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.72 E-value=1.1e-17 Score=153.43 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=102.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK----- 161 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~----- 161 (302)
.+.+++||++.+|+.++|||.+|||||||-..|.++++++ |.|.+.|.++...... +++-+..++.+-|....
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~-~mrplR~~mQvVFQDPygSLsP 378 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRK-EMRPLRRRMQVVFQDPYGSLSP 378 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChh-hhhhhhhhceEEEeCCCCCCCc
Confidence 3678999999999999999999999999999999998876 9999999987643322 22222222221110000
Q ss_pred -------------------CCCCHH---------------------------HHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 162 -------------------KITDPA---------------------------AIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 162 -------------------~~~~~~---------------------------~~~~~~la~al~~~~~llllDEP~---d 192 (302)
+..+.. +..+-+||||++-+|++|++|||| |
T Consensus 379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 000111 111123999999999999999998 8
Q ss_pred ccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
..-+.+++++|+++.+..+.+-+++|||+..|-
T Consensus 459 ~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~Vvr 491 (534)
T COG4172 459 RSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVR 491 (534)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH
Confidence 888999999999999999999999999977543
No 360
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.72 E-value=2e-17 Score=178.09 Aligned_cols=138 Identities=13% Similarity=0.157 Sum_probs=98.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe-cccCCChhH---HHHHHHhcccCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA-ACDTFRAAA---YEQLLILGKYND-------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~-~~d~~~~~~---~~ql~~~~~~~~-------- 154 (302)
++++++||++++|++++|+|||||||||++++|+|++.|++|+|.++ +.++..... +.++.++.|...
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e 478 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN 478 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence 47899999999999999999999999999999999999999999995 455432111 111111111100
Q ss_pred -CCe--e-------------------------------------------------------------------------
Q psy2881 155 -VPV--I------------------------------------------------------------------------- 158 (302)
Q Consensus 155 -~~~--~------------------------------------------------------------------------- 158 (302)
+.+ .
T Consensus 479 NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l 558 (1466)
T PTZ00265 479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI 558 (1466)
T ss_pred HHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCc
Confidence 000 0
Q ss_pred ----------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccc
Q psy2881 159 ----------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 159 ----------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
.........+..+-+||||++++|++||+|||+ |+.+...+.+.|.++.+..+.|+++++|
T Consensus 559 ~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsH 638 (1466)
T PTZ00265 559 HDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH 638 (1466)
T ss_pred HHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 000001112223334999999999999999998 9999999999999986544789999999
Q ss_pred eeehh
Q psy2881 220 EIFLI 224 (302)
Q Consensus 220 d~~lv 224 (302)
+...+
T Consensus 639 rls~i 643 (1466)
T PTZ00265 639 RLSTI 643 (1466)
T ss_pred CHHHH
Confidence 77654
No 361
>PLN03130 ABC transporter C family member; Provisional
Probab=99.72 E-value=1.5e-17 Score=180.52 Aligned_cols=138 Identities=16% Similarity=0.232 Sum_probs=101.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~---------- 153 (302)
++++|+||++++|+.++|||+|||||||+++.|.+++.|++|+|.++|.|+...+.. .++....|..
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence 589999999999999999999999999999999999999999999999987543321 1111111110
Q ss_pred -------------------C-----------C--CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 154 -------------------D-----------V--PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 154 -------------------~-----------~--~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+ . .+-.........++.+-+||||++++|++||||||| |..+...
T Consensus 1333 Ld~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~ 1412 (1622)
T PLN03130 1333 LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412 (1622)
T ss_pred hCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence 0 0 000000112223334445999999999999999998 9999998
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+.|++.. .++|+++++|....+.+
T Consensus 1413 Iq~~I~~~~--~~~TvI~IAHRL~tI~~ 1438 (1622)
T PLN03130 1413 IQKTIREEF--KSCTMLIIAHRLNTIID 1438 (1622)
T ss_pred HHHHHHHHC--CCCEEEEEeCChHHHHh
Confidence 888888764 36899999996654444
No 362
>PLN03232 ABC transporter C family member; Provisional
Probab=99.72 E-value=1.5e-17 Score=179.95 Aligned_cols=138 Identities=16% Similarity=0.216 Sum_probs=100.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~---------- 153 (302)
++++|+||++++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+...+.. .++.+..|..
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence 589999999999999999999999999999999999999999999999987543321 1111111110
Q ss_pred -------------------C-----------CCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 154 -------------------D-----------VPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 154 -------------------~-----------~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+ +... .........++.+-+||||++++|+++|+|||| |..+...
T Consensus 1330 L~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~ 1409 (1495)
T PLN03232 1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSL 1409 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 0 0000 000111223333445999999999999999998 9998888
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+.|++.. .++|+++++|....+.+
T Consensus 1410 Iq~~L~~~~--~~~TvI~IAHRl~ti~~ 1435 (1495)
T PLN03232 1410 IQRTIREEF--KSCTMLVIAHRLNTIID 1435 (1495)
T ss_pred HHHHHHHHc--CCCEEEEEeCCHHHHHh
Confidence 888888764 36899999996654444
No 363
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.71 E-value=5.9e-18 Score=136.90 Aligned_cols=103 Identities=21% Similarity=0.181 Sum_probs=72.9
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------------------------
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------------------------ 144 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------------------------ 144 (302)
++++||++++|++++|+||||||||||++.|+|.++|.+|+|.+++.++.......
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999999999999999999999999988775411110
Q ss_pred ---HHHHhcccCCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881 145 ---QLLILGKYNDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 145 ---ql~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~ 191 (302)
+...+.+.++... + .........+..+-.||+|++.+|+++|+|||+
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1111111111100 0 000122334445556999999999999999997
No 364
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=5e-17 Score=134.97 Aligned_cols=134 Identities=18% Similarity=0.223 Sum_probs=94.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--HH-HHHHHhcc------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--AY-EQLLILGK------------ 151 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--~~-~ql~~~~~------------ 151 (302)
.+.+.+||++.+|+.+++||.||||||||.++|+|+++|++|+|.++|....-.. .+ +.++...+
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 4678899999999999999999999999999999999999999999997652100 00 00000000
Q ss_pred --cCCCC------------------------eeec---CC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 152 --YNDVP------------------------VISE---KK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 152 --~~~~~------------------------~~~~---~~--~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.+..| ++.. .+ .....+..+-++|||++-+|+++|.||+- |...+.
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrs 186 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRS 186 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHH
Confidence 11111 0000 00 01112233345999999999999999994 888889
Q ss_pred HHHHHHHHHHHHhchhhccccce
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYE 220 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd 220 (302)
++++.+.++.+..|.+.+.++.+
T Consensus 187 Ql~NL~LeLQek~GiSyiYV~Qh 209 (267)
T COG4167 187 QLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred HHHHHHHHHHHHhCceEEEEech
Confidence 99999999998888777666643
No 365
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.71 E-value=1.1e-17 Score=154.86 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=86.4
Q ss_pred EEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-HHHHhccc------------------------------
Q psy2881 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-QLLILGKY------------------------------ 152 (302)
Q Consensus 104 lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-ql~~~~~~------------------------------ 152 (302)
|+||||||||||+++|+|+++|++|+|.+.|.++....... .+.+..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 58999999999999999999999999999987753221100 01111111
Q ss_pred -------CCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccce
Q psy2881 153 -------NDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYE 220 (302)
Q Consensus 153 -------~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd 220 (302)
.++.-+.. .......+..+-+||||++.+|+++|+|||+ |......+.+.|+++.+..+.+++++|||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 11100000 0001112223334999999999999999997 99999999999999987768899999999
Q ss_pred eehhhcC
Q psy2881 221 IFLIIDG 227 (302)
Q Consensus 221 ~~lvl~~ 227 (302)
...+...
T Consensus 161 ~~e~~~~ 167 (325)
T TIGR01187 161 QEEAMTM 167 (325)
T ss_pred HHHHHHh
Confidence 8766543
No 366
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=5.6e-18 Score=148.89 Aligned_cols=137 Identities=13% Similarity=0.122 Sum_probs=97.2
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------HHHHHHHhccc-----------
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------AYEQLLILGKY----------- 152 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------~~~ql~~~~~~----------- 152 (302)
+++|..+...+++|-|++||||||++++|+|+.+|+.|.|.++|.-..... ....+.+..|.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 567777665899999999999999999999999999999999986432111 01111111111
Q ss_pred --------------------CCCCeeecCC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881 153 --------------------NDVPVISEKK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK 207 (302)
Q Consensus 153 --------------------~~~~~~~~~~--~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~ 207 (302)
+|+.-.-... ...-.+..+-+|.||+...|+++|+|||- |.+.+.+++..|.++.
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~ 175 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR 175 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHH
Confidence 1110000000 00111223335999999999999999996 9999999999999999
Q ss_pred HHhchhhccccceeehhhcC
Q psy2881 208 KVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 208 ~~~~~~i~~~~hd~~lvl~~ 227 (302)
++.+..++.+||.+..++.-
T Consensus 176 ~e~~IPIlYVSHS~~Ev~RL 195 (352)
T COG4148 176 DEINIPILYVSHSLDEVLRL 195 (352)
T ss_pred HhcCCCEEEEecCHHHHHhh
Confidence 99999999999987766553
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.70 E-value=2.6e-17 Score=166.19 Aligned_cols=136 Identities=17% Similarity=0.073 Sum_probs=92.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh---hhCCCeEEEecccCCC--hhH---------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF---KKRKKSVLLAACDTFR--AAA---------------YEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~---~~~~g~V~l~~~d~~~--~~~---------------~~ql 146 (302)
++++++||++.+|++++||||||||||||+++|+|.. .|.+|+|.+.+++... ... .++.
T Consensus 191 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~ 270 (718)
T PLN03073 191 DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEA 270 (718)
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence 3678999999999999999999999999999999864 5788999876654210 000 0111
Q ss_pred HHhcccCCC-----------Ceeec----------------------------------------------CCCCCHHHH
Q psy2881 147 LILGKYNDV-----------PVISE----------------------------------------------KKITDPAAI 169 (302)
Q Consensus 147 ~~~~~~~~~-----------~~~~~----------------------------------------------~~~~~~~~~ 169 (302)
..+.+.... +.... .......+.
T Consensus 271 ~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k 350 (718)
T PLN03073 271 QLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWR 350 (718)
T ss_pred HHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHH
Confidence 111111000 00000 000111222
Q ss_pred HHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 170 AFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 170 ~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+-+||++++.+|+++|+|||+ |+.+...+.+.|+++ +.++++++||..++..
T Consensus 351 ~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~~l~~ 406 (718)
T PLN03073 351 MRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAREFLNT 406 (718)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHH
Confidence 2334999999999999999998 888888888888775 5789999999887655
No 368
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.70 E-value=3.9e-17 Score=177.11 Aligned_cols=138 Identities=12% Similarity=0.123 Sum_probs=100.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~---------- 153 (302)
++++|+||++++|+.++|+|+|||||||+++.|.+++.|++|+|.++|.|+...+.. .++....|..
T Consensus 1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~N 1379 (1522)
T TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN 1379 (1522)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHH
Confidence 589999999999999999999999999999999999999999999999987543321 1111111110
Q ss_pred ------------------------------CCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 154 ------------------------------DVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 154 ------------------------------~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
|+..... .......++.+-+||||++++|++||+|||| |..+...
T Consensus 1380 Ldp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~ 1459 (1522)
T TIGR00957 1380 LDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNL 1459 (1522)
T ss_pred cCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 0000000 0112223344445999999999999999998 9998888
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+.|++.. .++|+++++|....+.+
T Consensus 1460 Iq~~l~~~~--~~~TvI~IAHRl~ti~~ 1485 (1522)
T TIGR00957 1460 IQSTIRTQF--EDCTVLTIAHRLNTIMD 1485 (1522)
T ss_pred HHHHHHHHc--CCCEEEEEecCHHHHHh
Confidence 888887764 36899999997655443
No 369
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.70 E-value=4.4e-17 Score=163.95 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=93.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--------ccCC--ChhHHHHHHH--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--------CDTF--RAAAYEQLLI-------- 148 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--------~d~~--~~~~~~ql~~-------- 148 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+ ++++ .....+++..
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 545 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMK 545 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhh
Confidence 478899999999999999999999999999999999999999886643 2211 1122233221
Q ss_pred -----------hcccCCCCeee-c----------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 149 -----------LGKYNDVPVIS-E----------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 149 -----------~~~~~~~~~~~-~----------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
..+..++.-+. . .......+..+-+||||++++|+++|+|||+ |+.+...+.+.+
T Consensus 546 ~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l 625 (659)
T TIGR00954 546 RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625 (659)
T ss_pred ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 11112221100 0 0112334555567999999999999999998 888777777766
Q ss_pred HHHHHHhchhhccccceeeh
Q psy2881 204 KKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~l 223 (302)
++ .+.++++++|+...
T Consensus 626 ~~----~~~tvI~isH~~~~ 641 (659)
T TIGR00954 626 RE----FGITLFSVSHRKSL 641 (659)
T ss_pred HH----cCCEEEEEeCchHH
Confidence 54 37889999998765
No 370
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.70 E-value=6.9e-17 Score=148.33 Aligned_cols=142 Identities=16% Similarity=0.190 Sum_probs=104.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK 161 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~ 161 (302)
.+.+++||++.+||.+++||.+|||||-+...+.++++. -+|+|.+.|.|+-..+..+.-..-+++.+.-|....
T Consensus 24 ~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPM 103 (534)
T COG4172 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM 103 (534)
T ss_pred EeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccc
Confidence 467899999999999999999999999999999999974 268999999997543322111111111111000000
Q ss_pred CCCCH----------------------------------------------------HHHHHHHHHHHHhCCCCeEEEcC
Q psy2881 162 KITDP----------------------------------------------------AAIAFNAINIAQKKNTDIVIVDT 189 (302)
Q Consensus 162 ~~~~~----------------------------------------------------~~~~~~~la~al~~~~~llllDE 189 (302)
...++ .+..+-.||+|++.+|+++|.||
T Consensus 104 tSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADE 183 (534)
T COG4172 104 TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADE 183 (534)
T ss_pred cccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecC
Confidence 00000 11112239999999999999999
Q ss_pred CC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 190 SG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 190 P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|| |..-+.+++++|+++.+..|..++++|||+..|-...
T Consensus 184 PTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~A 225 (534)
T COG4172 184 PTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFA 225 (534)
T ss_pred CcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhh
Confidence 98 9999999999999999999999999999998776544
No 371
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=1.4e-16 Score=129.90 Aligned_cols=136 Identities=11% Similarity=0.074 Sum_probs=98.2
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--CCChhHHHHHHHhcccCCCCee-------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--TFRAAAYEQLLILGKYNDVPVI------- 158 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--~~~~~~~~ql~~~~~~~~~~~~------- 158 (302)
++.+++|+-+.|+.+.++||+|+|||||++.|.-+..|.+|...+.+.. ..+....+++..+.+..|.-|.
T Consensus 17 ~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwph 96 (242)
T COG4161 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPH 96 (242)
T ss_pred heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCch
Confidence 5678999999999999999999999999999999999999999987753 2233333344333333221110
Q ss_pred -------------ecCCCCC-H--------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 159 -------------SEKKITD-P--------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 159 -------------~~~~~~~-~--------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
...-..+ . ....+-+||||++.+|+++++|||+ |+.-
T Consensus 97 ltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpei 176 (242)
T COG4161 97 LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred hHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHH
Confidence 0000000 0 0111123999999999999999998 9998
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
..++.+.++++.. .|.+-++++|++..+
T Consensus 177 taqvv~iikel~~-tgitqvivthev~va 204 (242)
T COG4161 177 TAQIVSIIKELAE-TGITQVIVTHEVEVA 204 (242)
T ss_pred HHHHHHHHHHHHh-cCceEEEEEeehhHH
Confidence 8999999999975 488889999987764
No 372
>PTZ00243 ABC transporter; Provisional
Probab=99.68 E-value=7.2e-17 Score=174.94 Aligned_cols=137 Identities=10% Similarity=0.091 Sum_probs=99.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~--------- 154 (302)
++++|+||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...+.. .++.+..|...
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreN 1403 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQN 1403 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHH
Confidence 489999999999999999999999999999999999999999999999987643321 11111111100
Q ss_pred CC---------------------------------eeecCCCCCHHHHHHHHHHHHHhCC-CCeEEEcCCC---CccchH
Q psy2881 155 VP---------------------------------VISEKKITDPAAIAFNAINIAQKKN-TDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 ~~---------------------------------~~~~~~~~~~~~~~~~~la~al~~~-~~llllDEP~---d~~~~~ 197 (302)
+. +-.........++.+-+||||++++ |++||||||| |..+..
T Consensus 1404 Idp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~ 1483 (1560)
T PTZ00243 1404 VDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDR 1483 (1560)
T ss_pred hCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHH
Confidence 00 0000011122333344599999995 8999999998 888888
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
.+.+.|++.. .++|+++++|.+..+.
T Consensus 1484 ~Iq~~L~~~~--~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1484 QIQATVMSAF--SAYTVITIAHRLHTVA 1509 (1560)
T ss_pred HHHHHHHHHC--CCCEEEEEeccHHHHH
Confidence 8888888764 3679999999765443
No 373
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.68 E-value=9.2e-17 Score=156.29 Aligned_cols=138 Identities=17% Similarity=0.133 Sum_probs=93.4
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cCC----ChhHHHHHHH-----
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DTF----RAAAYEQLLI----- 148 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~~----~~~~~~ql~~----- 148 (302)
+++++++||.+.+|+.++|+||||+|||||++.|+|...|.+|+|.+... +.. .....+.+..
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~ 414 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDG 414 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccc
Confidence 35788999999999999999999999999999999999999998876332 110 0011222222
Q ss_pred -------hcccCCCCeeec---CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhc
Q psy2881 149 -------LGKYNDVPVISE---KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIF 215 (302)
Q Consensus 149 -------~~~~~~~~~~~~---~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~ 215 (302)
+..+++++.-.. -....-.+..+-.+|+.+..+|.+||||||| |..+...+.+.|..+ ..+++
T Consensus 415 ~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl 490 (530)
T COG0488 415 DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVL 490 (530)
T ss_pred cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEE
Confidence 111222211000 0011223444556899999999999999999 777666666666555 56889
Q ss_pred cccceeehhhcC
Q psy2881 216 ELPYEIFLIIDG 227 (302)
Q Consensus 216 ~~~hd~~lvl~~ 227 (302)
++|||..++-.-
T Consensus 491 ~VSHDr~Fl~~v 502 (530)
T COG0488 491 LVSHDRYFLDRV 502 (530)
T ss_pred EEeCCHHHHHhh
Confidence 999999886443
No 374
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.68 E-value=1e-16 Score=160.22 Aligned_cols=136 Identities=18% Similarity=0.069 Sum_probs=98.6
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCCh-------------------hHH
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRA-------------------AAY 143 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~-------------------~~~ 143 (302)
+++++|+|+++++|++++|+||||||||||++.|+|..++. +|+|.++|.+.... ...
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~ 117 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVR 117 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHH
Confidence 45899999999999999999999999999999999998774 69999999764210 111
Q ss_pred HHHHH---------------------hcccCCCCee----ecC----CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881 144 EQLLI---------------------LGKYNDVPVI----SEK----KITDPAAIAFNAINIAQKKNTDIVIVDTSG--- 191 (302)
Q Consensus 144 ~ql~~---------------------~~~~~~~~~~----~~~----~~~~~~~~~~~~la~al~~~~~llllDEP~--- 191 (302)
|.+.. +-+.+++.-. ... .+....++.+-.||++++.+|+++++|||+
T Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgL 197 (617)
T TIGR00955 118 EHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGL 197 (617)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcch
Confidence 11111 1111111100 000 011222334445999999999999999997
Q ss_pred CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
|+.+...+++.|+++++. +.++++++|+..
T Consensus 198 D~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~ 227 (617)
T TIGR00955 198 DSFMAYSVVQVLKGLAQK-GKTIICTIHQPS 227 (617)
T ss_pred hHHHHHHHHHHHHHHHhC-CCEEEEEeCCCC
Confidence 999999999999999864 889999999864
No 375
>KOG0055|consensus
Probab=99.67 E-value=2.4e-16 Score=161.95 Aligned_cols=135 Identities=15% Similarity=0.172 Sum_probs=97.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~--------- 154 (302)
++++|+||++++|+.++||||+||||||.+.+|-++|.|.+|.|.++|.|+..... ++|+..+.|..-
T Consensus 1004 ~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrEN 1083 (1228)
T KOG0055|consen 1004 PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIREN 1083 (1228)
T ss_pred hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHH
Confidence 47899999999999999999999999999999999999999999999999764322 222222222210
Q ss_pred CCe----------------------e------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 VPV----------------------I------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 ~~~----------------------~------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.+ + .......-.++.+-+||||++++|++|||||+| |.++..
T Consensus 1084 I~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1084 IAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred HhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence 000 0 000001112233345999999999999999998 988888
Q ss_pred HHHHHHHHHHHHhchhhccccceeeh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+.+.|.+... ++|.+++.|.+-.
T Consensus 1164 vVQeALd~a~~--gRT~IvIAHRLST 1187 (1228)
T KOG0055|consen 1164 VVQEALDRAME--GRTTIVIAHRLST 1187 (1228)
T ss_pred HHHHHHHHhhc--CCcEEEEecchhh
Confidence 88888887753 6788888885443
No 376
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.66 E-value=2.2e-16 Score=170.89 Aligned_cols=138 Identities=9% Similarity=0.124 Sum_probs=99.1
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC---------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN--------- 153 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~--------- 153 (302)
+++++|+||++++|+.++|+|+||||||||++.|+|++. .+|+|.++|.|+...+.. .++.+..|..
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~ 1310 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK 1310 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHH
Confidence 358999999999999999999999999999999999996 789999999987543321 1111111110
Q ss_pred --------------------C-----------C--CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 154 --------------------D-----------V--PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 154 --------------------~-----------~--~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+ + .+-.........++.+-+||||++++|++||||||| |..+..
T Consensus 1311 NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~ 1390 (1490)
T TIGR01271 1311 NLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390 (1490)
T ss_pred HhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 0 0 000000112223344445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+.+.|++.. .++|+++++|.+..+.+
T Consensus 1391 ~I~~~L~~~~--~~~TvI~IaHRl~ti~~ 1417 (1490)
T TIGR01271 1391 IIRKTLKQSF--SNCTVILSEHRVEALLE 1417 (1490)
T ss_pred HHHHHHHHHc--CCCEEEEEecCHHHHHh
Confidence 9988888764 36899999996544433
No 377
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=4e-16 Score=128.17 Aligned_cols=134 Identities=10% Similarity=0.151 Sum_probs=91.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC----ChhHHH-------HHHHhcccCC-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF----RAAAYE-------QLLILGKYND- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~----~~~~~~-------ql~~~~~~~~- 154 (302)
++++++||+++.||++++=||+|+||||++++|-+-|.|++|+|.+.-.+-. ....++ .+.+..|.+.
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 6889999999999999999999999999999999999999999998654321 111111 1111111110
Q ss_pred CCe-----------eecCCCCCH----------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881 155 VPV-----------ISEKKITDP----------------------------AAIAFNAINIAQKKNTDIVIVDTSG---R 192 (302)
Q Consensus 155 ~~~-----------~~~~~~~~~----------------------------~~~~~~~la~al~~~~~llllDEP~---d 192 (302)
+|- .......+. .+..+-.|||.++.++.++|+|||| |
T Consensus 105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccccc
Confidence 010 000000000 0111112999999999999999998 8
Q ss_pred ccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 193 LSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
..++..+.+++.+-+ ..|..++-+-||-
T Consensus 185 a~Nr~vVveli~e~K-a~GaAlvGIFHDe 212 (235)
T COG4778 185 ATNRAVVVELIREAK-ARGAALVGIFHDE 212 (235)
T ss_pred ccchHHHHHHHHHHH-hcCceEEEeeccH
Confidence 888888888888754 4577777777863
No 378
>KOG0056|consensus
Probab=99.66 E-value=2.5e-16 Score=147.47 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=94.4
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HHHHHHHhcccC---------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AYEQLLILGKYN--------- 153 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~~ql~~~~~~~--------- 153 (302)
+++++|+||++.+|+.+++|||+|+||||+++.|-+++.-++|+|.++|+|+.... .+.++...+|..
T Consensus 551 k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~y 630 (790)
T KOG0056|consen 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILY 630 (790)
T ss_pred CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeee
Confidence 36789999999999999999999999999999999999999999999999974221 111222222210
Q ss_pred CCCeeecCCCCC-----------------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 154 DVPVISEKKITD-----------------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 154 ~~~~~~~~~~~~-----------------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
++.+ ......+ -.++.+-+|||++...|.++++||++ |.++
T Consensus 631 NIry-ak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~t 709 (790)
T KOG0056|consen 631 NIRY-AKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNT 709 (790)
T ss_pred heee-cCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCcc
Confidence 0000 0000000 01112224999999999999999998 9999
Q ss_pred hHHHHHHHHHHHHHhchhhcccccee
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
...+...|.+++. ++|-+++.|..
T Consensus 710 ER~IQaaL~rlca--~RTtIVvAHRL 733 (790)
T KOG0056|consen 710 ERAIQAALARLCA--NRTTIVVAHRL 733 (790)
T ss_pred HHHHHHHHHHHhc--CCceEEEeeee
Confidence 9999999999975 45555566633
No 379
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.66 E-value=2.5e-16 Score=169.31 Aligned_cols=136 Identities=13% Similarity=0.043 Sum_probs=98.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh---hCCCeEEEecccCCC-----h-------------hHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK---KRKKSVLLAACDTFR-----A-------------AAYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~---~~~g~V~l~~~d~~~-----~-------------~~~~q 145 (302)
.+++++|+++++|++++|+||||||||||++.|+|+.+ +++|+|.++|.+... . ..++.
T Consensus 777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~ 856 (1394)
T TIGR00956 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRES 856 (1394)
T ss_pred EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHH
Confidence 58999999999999999999999999999999999987 678999999876521 0 11122
Q ss_pred HHHhc---------------------ccCCCCee----ec--CCCCCHHHHHHHHHHHHHhCCCC-eEEEcCCC---Ccc
Q psy2881 146 LLILG---------------------KYNDVPVI----SE--KKITDPAAIAFNAINIAQKKNTD-IVIVDTSG---RLS 194 (302)
Q Consensus 146 l~~~~---------------------~~~~~~~~----~~--~~~~~~~~~~~~~la~al~~~~~-llllDEP~---d~~ 194 (302)
+...+ +..++.-. .. ..+....++.+-.||++++.+|+ ++|+|||+ |..
T Consensus 857 L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~ 936 (1394)
T TIGR00956 857 LRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQ 936 (1394)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHH
Confidence 21110 00111000 00 00122233444459999999997 99999998 999
Q ss_pred chHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
+...+++.|+++++ .|.++++++|+...
T Consensus 937 ~~~~i~~~L~~la~-~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 937 TAWSICKLMRKLAD-HGQAILCTIHQPSA 964 (1394)
T ss_pred HHHHHHHHHHHHHH-cCCEEEEEecCCCH
Confidence 99999999999975 48899999998764
No 380
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.63 E-value=8.2e-16 Score=135.29 Aligned_cols=56 Identities=7% Similarity=0.132 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCC--CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 167 AAIAFNAINIAQKKNT--DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 167 ~~~~~~~la~al~~~~--~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+..+-.||++++.+| +++|+|||+ |+.....+++.|+++++ .+.++++++||...
T Consensus 141 G~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~~ 201 (226)
T cd03270 141 GEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDEDT 201 (226)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHHH
Confidence 4445556999999998 599999997 99999999999999865 48899999998754
No 381
>PLN03140 ABC transporter G family member; Provisional
Probab=99.63 E-value=6.5e-16 Score=166.04 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=98.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCCCh-------------------hHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTFRA-------------------AAYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~~~-------------------~~~~q 145 (302)
.+++|+|+.+++|++++|+||||||||||+++|+|..++ .+|+|.++|.+.... ...|.
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~ 973 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence 578999999999999999999999999999999998763 579999988654211 11122
Q ss_pred HHHhc---------------------ccCCCCeee-cC------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881 146 LLILG---------------------KYNDVPVIS-EK------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS 194 (302)
Q Consensus 146 l~~~~---------------------~~~~~~~~~-~~------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~ 194 (302)
+...+ +..++.-.. .. ......++.+-.||++++.+|+++++|||+ |..
T Consensus 974 L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~ 1053 (1470)
T PLN03140 974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053 (1470)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence 21110 001110000 00 112233444455999999999999999998 999
Q ss_pred chHHHHHHHHHHHHHhchhhccccceee
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
+...+++.|+++++. |.++++++|+..
T Consensus 1054 ~a~~v~~~L~~l~~~-g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1054 AAAIVMRTVRNTVDT-GRTVVCTIHQPS 1080 (1470)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 999999999999765 889999999875
No 382
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=9.9e-16 Score=123.49 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=93.8
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCChhH-HHHHHHhcccC------CCC-
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRAAA-YEQLLILGKYN------DVP- 156 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~~~-~~ql~~~~~~~------~~~- 156 (302)
.+.++|+++.+|||+.+.||+|||||||+.-++|.+.++ .|++.++++++.-..+ ..|+..+.+.. .+.
T Consensus 17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~ 96 (213)
T COG4136 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQ 96 (213)
T ss_pred EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccccccc
Confidence 466899999999999999999999999999999999864 6999999988754333 23333222210 000
Q ss_pred -eeecCC----C---------------------CCH-----HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 157 -VISEKK----I---------------------TDP-----AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 157 -~~~~~~----~---------------------~~~-----~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
...... + .++ .+.++-++.|+++..|+.+++|||. |...+.+..+.
T Consensus 97 Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~w 176 (213)
T COG4136 97 NLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176 (213)
T ss_pred ceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHH
Confidence 000000 0 011 1222334779999999999999997 55555555555
Q ss_pred HHHHHHHhchhhccccceeehhh
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
...-.+..+...+.+|||..-|-
T Consensus 177 VFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 177 VFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHhcCCCeEEEecccccCC
Confidence 55555566778889999977654
No 383
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.62 E-value=2.2e-16 Score=136.11 Aligned_cols=131 Identities=16% Similarity=0.196 Sum_probs=83.3
Q ss_pred CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC---------CeEEEecccCCChhHHHHHHHhcccCCCCe---
Q psy2881 90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK---------KSVLLAACDTFRAAAYEQLLILGKYNDVPV--- 157 (302)
Q Consensus 90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~---------g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~--- 157 (302)
+++++++.+| +++|+|||||||||+++.|++++.+.. +.+.+.+.+........++....+.....+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 5678999999 999999999999999999999986542 245555544321000000001111110000
Q ss_pred --------------e-ecCCCCCHHHHHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhc
Q psy2881 158 --------------I-SEKKITDPAAIAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIF 215 (302)
Q Consensus 158 --------------~-~~~~~~~~~~~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~ 215 (302)
. .........+..+-+++++++ .+|+++|+|||+ |+.....+++.|+++.+ +.+++
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiI 170 (197)
T cd03278 93 SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFI 170 (197)
T ss_pred ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEE
Confidence 0 000011122333445778775 567999999997 88889999999998864 56889
Q ss_pred cccceeeh
Q psy2881 216 ELPYEIFL 223 (302)
Q Consensus 216 ~~~hd~~l 223 (302)
++||+...
T Consensus 171 iitH~~~~ 178 (197)
T cd03278 171 VITHRKGT 178 (197)
T ss_pred EEECCHHH
Confidence 99998764
No 384
>KOG0059|consensus
Probab=99.61 E-value=1.7e-15 Score=156.69 Aligned_cols=137 Identities=19% Similarity=0.177 Sum_probs=101.5
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-----------------------hhHHH
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-----------------------AAAYE 144 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-----------------------~~~~~ 144 (302)
+.+++++.+++||+.++.|||||||||++++|.|..+|++|++.+.|.|... ...+|
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 5689999999999999999999999999999999999999999998887642 12334
Q ss_pred HHHHhcccCCCCeeecCC----------------C----CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH
Q psy2881 145 QLLILGKYNDVPVISEKK----------------I----TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR 201 (302)
Q Consensus 145 ql~~~~~~~~~~~~~~~~----------------~----~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~ 201 (302)
.+..|+...|++...... . ..-..+.+-.+|.|++.+|++++||||+ ||..+..+++
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ 739 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWD 739 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH
Confidence 455555544433100000 0 0000011122788999999999999996 9999999999
Q ss_pred HHHHHHHHhchhhccccceeehhh
Q psy2881 202 ELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 202 ~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
.+.++.+. ++.+++.||.+...-
T Consensus 740 ii~~~~k~-g~aiiLTSHsMeE~E 762 (885)
T KOG0059|consen 740 IIARLRKN-GKAIILTSHSMEEAE 762 (885)
T ss_pred HHHHHHhc-CCEEEEEcCCHHHHH
Confidence 99999875 448999999776543
No 385
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.61 E-value=1.6e-15 Score=164.15 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=97.7
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------cC--CChhHHHHHHHh--------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------DT--FRAAAYEQLLIL-------- 149 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d~--~~~~~~~ql~~~-------- 149 (302)
+++++|+||++++|++++|+||||||||||++.|+|.++|.+|+|.+.|. +. +.....+.+...
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 518 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRY 518 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence 35799999999999999999999999999999999999999999987652 21 111222222100
Q ss_pred ---cccCC-------CC------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHH
Q psy2881 150 ---GKYND-------VP------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKV 209 (302)
Q Consensus 150 ---~~~~~-------~~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~ 209 (302)
.+..+ .+ +-.........++.+-+||||+..+|+++|+|||+ |......+++. +..+.
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-- 596 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-- 596 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--
Confidence 00000 00 00011122344566667999999999999999997 99999988875 55554
Q ss_pred hchhhccccceeehhh
Q psy2881 210 IEKKIFELPYEIFLII 225 (302)
Q Consensus 210 ~~~~i~~~~hd~~lvl 225 (302)
.++|++++||++..+-
T Consensus 597 ~~~tvilvtH~~~~~~ 612 (1490)
T TIGR01271 597 SNKTRILVTSKLEHLK 612 (1490)
T ss_pred cCCeEEEEeCChHHHH
Confidence 3789999999986654
No 386
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.61 E-value=2.2e-15 Score=124.35 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=91.2
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCCC----eeecC
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDVP----VISEK 161 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~~----~~~~~ 161 (302)
+-++|..+..|+++-+|||||+|||||++.+||+. |-+|+|.+.|.+....+..+ +-.++++....+ ++...
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL 93 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYL 93 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhh
Confidence 44678888999999999999999999999999986 56899999999987554432 334445543322 22211
Q ss_pred CCCCHHHHHHHH------------------------------HHHHH-------hCCCCeEEEcCCC---CccchHHHHH
Q psy2881 162 KITDPAAIAFNA------------------------------INIAQ-------KKNTDIVIVDTSG---RLSTQSHLMR 201 (302)
Q Consensus 162 ~~~~~~~~~~~~------------------------------la~al-------~~~~~llllDEP~---d~~~~~~l~~ 201 (302)
.-..+.+..... +|... .-..+++|+|||- |...+..+-.
T Consensus 94 ~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr 173 (248)
T COG4138 94 TLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR 173 (248)
T ss_pred hhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH
Confidence 111111111110 11111 1134699999995 7666666667
Q ss_pred HHHHHHHHhchhhccccceeehhhcCC
Q psy2881 202 ELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 202 ~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.|.+++. .|.++++++||..-.+...
T Consensus 174 ll~~~c~-~G~~vims~HDLNhTLrhA 199 (248)
T COG4138 174 LLSALCQ-QGLAIVMSSHDLNHTLRHA 199 (248)
T ss_pred HHHHHHh-CCcEEEEeccchhhHHHHH
Confidence 7777775 4899999999998766543
No 387
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.60 E-value=9e-16 Score=165.05 Aligned_cols=135 Identities=13% Similarity=0.061 Sum_probs=96.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh----hhCCCeEEEecccCCCh---------------------h
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF----KKRKKSVLLAACDTFRA---------------------A 141 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~----~~~~g~V~l~~~d~~~~---------------------~ 141 (302)
.+++|+|+.+++|++++|+||||||||||+++|+|.. +|.+|+|.++|.+.... .
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 5899999999999999999999999999999999986 46899999998754210 0
Q ss_pred HHHHHHHh--------------------------cccCCCCeeec-------CCCCCHHHHHHHHHHHHHhCCCCeEEEc
Q psy2881 142 AYEQLLIL--------------------------GKYNDVPVISE-------KKITDPAAIAFNAINIAQKKNTDIVIVD 188 (302)
Q Consensus 142 ~~~ql~~~--------------------------~~~~~~~~~~~-------~~~~~~~~~~~~~la~al~~~~~llllD 188 (302)
..+.+..- .+..++.-... ..+..-.++.+-.||++++.+|+++++|
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 11111100 00011100000 0000011122223999999999999999
Q ss_pred CCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 189 TSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 189 EP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
||+ |+.+...+++.|+++++..+.++++++|+.
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~ 270 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQC 270 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 997 999999999999999877688999999985
No 388
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.60 E-value=3.9e-15 Score=136.50 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=93.7
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH--HH---------------------
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY--EQ--------------------- 145 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~--~q--------------------- 145 (302)
+.+||+++++||++.|+|.|||||||+++.|.|+++|++|+|.++|.++.....- .+
T Consensus 339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~ 418 (546)
T COG4615 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGK 418 (546)
T ss_pred ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccC
Confidence 4578999999999999999999999999999999999999999999876421110 00
Q ss_pred -----HHHhcccCCCC----eee---cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHh
Q psy2881 146 -----LLILGKYNDVP----VIS---EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVI 210 (302)
Q Consensus 146 -----l~~~~~~~~~~----~~~---~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~ 210 (302)
+..|-++..+. +.. ........++-+-++--|+..+.+++++||=. ||.-+..+...+.-..+..
T Consensus 419 as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~q 498 (546)
T COG4615 419 ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ 498 (546)
T ss_pred CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHh
Confidence 11111111000 000 00000011111222445788999999999975 8888888888888877888
Q ss_pred chhhccccceeeh
Q psy2881 211 EKKIFELPYEIFL 223 (302)
Q Consensus 211 ~~~i~~~~hd~~l 223 (302)
|+|++.+|||-..
T Consensus 499 GKTI~aIsHDd~Y 511 (546)
T COG4615 499 GKTIFAISHDDHY 511 (546)
T ss_pred CCeEEEEecCchh
Confidence 9999999997554
No 389
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.60 E-value=2.4e-15 Score=163.23 Aligned_cols=140 Identities=15% Similarity=0.139 Sum_probs=97.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec------ccC--CChhHHHHHHH----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA------CDT--FRAAAYEQLLI---------- 148 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~------~d~--~~~~~~~ql~~---------- 148 (302)
++++++||++++|++++|+||||||||||++.|+|.++|.+|+|.+.| ++. +.....+.+..
T Consensus 652 ~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~ 731 (1522)
T TIGR00957 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQ 731 (1522)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHH
Confidence 478999999999999999999999999999999999999999987765 221 11111111110
Q ss_pred ----hcc---cCC-CC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH-Hh
Q psy2881 149 ----LGK---YND-VP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK-VI 210 (302)
Q Consensus 149 ----~~~---~~~-~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~-~~ 210 (302)
... ..+ .| .. .......-.++.+-+||||+..+|+++|+|||+ |.++...+++.+.+... ..
T Consensus 732 ~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~ 811 (1522)
T TIGR00957 732 QVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK 811 (1522)
T ss_pred HHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhc
Confidence 000 000 00 00 111122335566667999999999999999998 99999999888865321 23
Q ss_pred chhhccccceeehhhc
Q psy2881 211 EKKIFELPYEIFLIID 226 (302)
Q Consensus 211 ~~~i~~~~hd~~lvl~ 226 (302)
++|++++||+...+..
T Consensus 812 ~~tvIlvTH~~~~l~~ 827 (1522)
T TIGR00957 812 NKTRILVTHGISYLPQ 827 (1522)
T ss_pred CCEEEEEeCChhhhhh
Confidence 6799999998765543
No 390
>PLN03140 ABC transporter G family member; Provisional
Probab=99.59 E-value=5.6e-16 Score=166.56 Aligned_cols=135 Identities=13% Similarity=0.062 Sum_probs=96.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCCh-------------------hHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRA-------------------AAYE 144 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~-------------------~~~~ 144 (302)
.+++|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+.... ...|
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 4799999999999999999999999999999999999987 89999998764211 1122
Q ss_pred HHHHhcccCCCCee-------ecCC----------------------------------------------------CCC
Q psy2881 145 QLLILGKYNDVPVI-------SEKK----------------------------------------------------ITD 165 (302)
Q Consensus 145 ql~~~~~~~~~~~~-------~~~~----------------------------------------------------~~~ 165 (302)
.+...+...+.... .... +..
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 22221110000000 0000 000
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 166 PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 166 ~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
-.++.+-.||++++.+|+++++|||+ |..+...+++.|+++++..+.|+++++|+.
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp 397 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP 397 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 00011112889999999999999997 999999999999999877788999999975
No 391
>KOG0061|consensus
Probab=99.57 E-value=4.5e-15 Score=147.77 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=98.1
Q ss_pred hhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh---CCCeEEEecccCCC-------------------hhH
Q psy2881 85 LKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK---RKKSVLLAACDTFR-------------------AAA 142 (302)
Q Consensus 85 l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~---~~g~V~l~~~d~~~-------------------~~~ 142 (302)
.+.++++++..+++|++.||+||+|||||||+++|||.... .+|+|.++|....+ ...
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 46789999999999999999999999999999999999874 57999999943221 112
Q ss_pred HHHHHHhcc---------------------cCCCC-----eeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881 143 YEQLLILGK---------------------YNDVP-----VISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG--- 191 (302)
Q Consensus 143 ~~ql~~~~~---------------------~~~~~-----~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~--- 191 (302)
.|.+.+.+. .+++. .+... .+..-.++.+-.+|.-++.+|.++++||||
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 222222211 11111 00000 001111223334888899999999999998
Q ss_pred CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 192 RLSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
|..+...+++.|+++++. |++|+++-|..
T Consensus 202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQP 230 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARS-GRTVICTIHQP 230 (613)
T ss_pred chhhHHHHHHHHHHHHhC-CCEEEEEEeCC
Confidence 999999999999999998 99999888865
No 392
>KOG0054|consensus
Probab=99.57 E-value=1e-14 Score=153.09 Aligned_cols=141 Identities=15% Similarity=0.175 Sum_probs=102.2
Q ss_pred hhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeec----
Q psy2881 85 LKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE---- 160 (302)
Q Consensus 85 l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~---- 160 (302)
+.++++++||++++||.+||||.+||||||++..|-++..|.+|+|.++|.|+...+-.+--....-..+-|+.+.
T Consensus 1152 lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence 4568999999999999999999999999999999999999999999999999876554321111111111111111
Q ss_pred -----------------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 161 -----------------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 161 -----------------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
..+....++..-.+|||++++.++++|||+| |+.++
T Consensus 1232 ~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD 1311 (1381)
T KOG0054|consen 1232 FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 1311 (1381)
T ss_pred cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHH
Confidence 1111112222223999999999999999998 99998
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
..+.+.|++-- .++|++.+.|.+.-|+|+
T Consensus 1312 ~lIQ~tIR~~F--~dcTVltIAHRl~TVmd~ 1340 (1381)
T KOG0054|consen 1312 ALIQKTIREEF--KDCTVLTIAHRLNTVMDS 1340 (1381)
T ss_pred HHHHHHHHHHh--cCCeEEEEeeccchhhhc
Confidence 88888887654 367888888866655554
No 393
>PLN03232 ABC transporter C family member; Provisional
Probab=99.56 E-value=9.2e-15 Score=158.55 Aligned_cols=136 Identities=17% Similarity=0.138 Sum_probs=92.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCe-------EEEecccCC--ChhHHHHHH----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS-------VLLAACDTF--RAAAYEQLL---------- 147 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~-------V~l~~~d~~--~~~~~~ql~---------- 147 (302)
++++|+||++++|+.++|+||+|||||||++.|+|.++|.+|. |.+..++++ ....++.+.
T Consensus 631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~ 710 (1495)
T PLN03232 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERY 710 (1495)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHH
Confidence 4789999999999999999999999999999999999998764 444445432 111122211
Q ss_pred -HhcccCC-------CC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH-HHHHHH
Q psy2881 148 -ILGKYND-------VP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL-KKIKKV 209 (302)
Q Consensus 148 -~~~~~~~-------~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L-~~l~~~ 209 (302)
...+..+ .| .+ .......-.++.+-+||||+.++|+++|+|||+ |.++...+++.+ ....
T Consensus 711 ~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-- 788 (1495)
T PLN03232 711 WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-- 788 (1495)
T ss_pred HHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--
Confidence 0000000 00 01 111122345666777999999999999999998 888888776654 3332
Q ss_pred hchhhccccceeehh
Q psy2881 210 IEKKIFELPYEIFLI 224 (302)
Q Consensus 210 ~~~~i~~~~hd~~lv 224 (302)
.++|++++||+...+
T Consensus 789 ~~kT~IlvTH~~~~l 803 (1495)
T PLN03232 789 KGKTRVLVTNQLHFL 803 (1495)
T ss_pred cCCEEEEEECChhhH
Confidence 368999999976543
No 394
>PTZ00243 ABC transporter; Provisional
Probab=99.56 E-value=9.2e-15 Score=158.69 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=93.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec------ccC--CChhHHHHHHHhc--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA------CDT--FRAAAYEQLLILG-------- 150 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~------~d~--~~~~~~~ql~~~~-------- 150 (302)
++++++||++++|++++|+||||||||||++.|+|.++|++|+|.+.+ ++. +.....+.+....
T Consensus 674 ~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~ 753 (1560)
T PTZ00243 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLA 753 (1560)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHH
Confidence 478999999999999999999999999999999999999999876532 221 1111112211100
Q ss_pred ------------ccC--CCCe--eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhc
Q psy2881 151 ------------KYN--DVPV--ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIE 211 (302)
Q Consensus 151 ------------~~~--~~~~--~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~ 211 (302)
+.+ +... -.......-.++.+-+||||+..+|+++|+|||+ |++....+++.+.... ..+
T Consensus 754 ~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~-~~~ 832 (1560)
T PTZ00243 754 DAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA-LAG 832 (1560)
T ss_pred HHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh-hCC
Confidence 000 1100 0111122334555667999999999999999997 8877777776543221 137
Q ss_pred hhhccccceeehhh
Q psy2881 212 KKIFELPYEIFLII 225 (302)
Q Consensus 212 ~~i~~~~hd~~lvl 225 (302)
++++++||+..++-
T Consensus 833 ~TvIlvTH~~~~~~ 846 (1560)
T PTZ00243 833 KTRVLATHQVHVVP 846 (1560)
T ss_pred CEEEEEeCCHHHHH
Confidence 89999999887653
No 395
>PLN03130 ABC transporter C family member; Provisional
Probab=99.55 E-value=1.6e-14 Score=157.22 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=93.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC-CeEEEec------ccCC--ChhHHHHHH----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK-KSVLLAA------CDTF--RAAAYEQLL---------- 147 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~-g~V~l~~------~d~~--~~~~~~ql~---------- 147 (302)
++++|+||++++|+.++|+||+|||||||++.|+|.++|.+ |+|.+.+ ++++ ....++.+.
T Consensus 631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y 710 (1622)
T PLN03130 631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERY 710 (1622)
T ss_pred ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHH
Confidence 47899999999999999999999999999999999999998 7776543 3321 111111111
Q ss_pred -HhcccCC-------C------CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHH
Q psy2881 148 -ILGKYND-------V------PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKV 209 (302)
Q Consensus 148 -~~~~~~~-------~------~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~ 209 (302)
...+..+ . .+-.......-.++.+-+||||+.++|+++|+|||+ |.++...+++. +....
T Consensus 711 ~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-- 788 (1622)
T PLN03130 711 ERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-- 788 (1622)
T ss_pred HHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--
Confidence 0000000 0 111111123345666677999999999999999998 88877776654 44442
Q ss_pred hchhhccccceeehh
Q psy2881 210 IEKKIFELPYEIFLI 224 (302)
Q Consensus 210 ~~~~i~~~~hd~~lv 224 (302)
.++|++++||+...+
T Consensus 789 ~~kTvIlVTH~l~~l 803 (1622)
T PLN03130 789 RGKTRVLVTNQLHFL 803 (1622)
T ss_pred cCCEEEEEECCHhHH
Confidence 368999999976543
No 396
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.6e-14 Score=133.54 Aligned_cols=139 Identities=19% Similarity=0.206 Sum_probs=96.8
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HHHHHHHhccc----------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AYEQLLILGKY---------- 152 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~~ql~~~~~~---------- 152 (302)
+++++++||++++|+.++++||+|+||||+++.|-+++.+++|+|.++|+|+.... .+.-+...++.
T Consensus 276 r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~y 355 (497)
T COG5265 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAY 355 (497)
T ss_pred chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHH
Confidence 35788999999999999999999999999999999999999999999999863211 11111111111
Q ss_pred ---------------------------------CCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 153 ---------------------------------NDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 153 ---------------------------------~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
+...+-...-...-.++.+-+|||+++.+|+++++||+| |.++.
T Consensus 356 ni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te 435 (497)
T COG5265 356 NIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTE 435 (497)
T ss_pred HHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHH
Confidence 000000000000111233345999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+...|++... +.|.+++.|.+.-+.+
T Consensus 436 ~~iq~~l~~~~~--~rttlviahrlsti~~ 463 (497)
T COG5265 436 QAIQAALREVSA--GRTTLVIAHRLSTIID 463 (497)
T ss_pred HHHHHHHHHHhC--CCeEEEEeehhhhccC
Confidence 999999988863 5566667775444433
No 397
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.50 E-value=1e-13 Score=122.96 Aligned_cols=52 Identities=6% Similarity=0.154 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccce
Q psy2881 167 AAIAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYE 220 (302)
Q Consensus 167 ~~~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd 220 (302)
.+..+-+||++++ .+|+++|+|||+ |+.....+++.|.++.+ +.++++++|+
T Consensus 162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~ 220 (243)
T cd03272 162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFR 220 (243)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecC
Confidence 3444556899986 368999999997 99999999999988854 5667777775
No 398
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.49 E-value=2.3e-14 Score=124.16 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=43.1
Q ss_pred HHHHHHhCCCCeEEEcCCC---CccchH-HHHHHHHHHHHHhchhhccccceeeh
Q psy2881 173 AINIAQKKNTDIVIVDTSG---RLSTQS-HLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 173 ~la~al~~~~~llllDEP~---d~~~~~-~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
+++++++.+|+++++|||+ |+.... .+.+.|.++.+..+.++++++|+..+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~ 185 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEEL 185 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHH
Confidence 5788999999999999997 888888 89999988866446789999998654
No 399
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.48 E-value=6.6e-14 Score=118.88 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=97.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK----RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKK 162 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~ 162 (302)
.+.+++|++.++||+-++||.+|||||-..+.|+|..+. +..+..+.+.|..+....+.-+..++....-|.....
T Consensus 21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~s 100 (330)
T COG4170 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchh
Confidence 367889999999999999999999999999999998763 2334455555554444333333333221111111111
Q ss_pred CCCHHHHHH----------------------------H-----------------------------HHHHHHhCCCCeE
Q psy2881 163 ITDPAAIAF----------------------------N-----------------------------AINIAQKKNTDIV 185 (302)
Q Consensus 163 ~~~~~~~~~----------------------------~-----------------------------~la~al~~~~~ll 185 (302)
..|+.+.+- + .||.|++.+|.++
T Consensus 101 CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLL 180 (330)
T COG4170 101 CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceE
Confidence 111111110 0 1888999999999
Q ss_pred EEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 186 IVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 186 llDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|.|||+ ++.++.+++.+|..++...+.++++++||+-.+-.
T Consensus 181 IADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~ 224 (330)
T COG4170 181 IADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQ 224 (330)
T ss_pred eccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHH
Confidence 999998 78889999999999999889999999999865443
No 400
>KOG0927|consensus
Probab=99.47 E-value=8.2e-14 Score=132.20 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=86.0
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-------------hhH------------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-------------AAA------------ 142 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-------------~~~------------ 142 (302)
++++++|.+..++.+++|||||+|||||++.+.|.+.|..|.|.-.....+. .++
T Consensus 405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~ 484 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEK 484 (614)
T ss_pred hhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccc
Confidence 4456677888999999999999999999999999999999988654332210 000
Q ss_pred -HHHHHHhcccCCCCeeec---CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhc
Q psy2881 143 -YEQLLILGKYNDVPVISE---KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIF 215 (302)
Q Consensus 143 -~~ql~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~ 215 (302)
.+.++.+-.++|+.--.+ .......+..+-.+++..+..|.+|+||||| |.++...+-+.|.++ ..+++
T Consensus 485 ~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv 560 (614)
T KOG0927|consen 485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVV 560 (614)
T ss_pred hHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCcee
Confidence 111222212222210000 0001112233344788889999999999998 777666555555554 44678
Q ss_pred cccceeehhh
Q psy2881 216 ELPYEIFLII 225 (302)
Q Consensus 216 ~~~hd~~lvl 225 (302)
.+|||..++-
T Consensus 561 ~vSHDfrlI~ 570 (614)
T KOG0927|consen 561 LVSHDFRLIS 570 (614)
T ss_pred eeechhhHHH
Confidence 8999988753
No 401
>KOG0062|consensus
Probab=99.47 E-value=4.1e-14 Score=133.52 Aligned_cols=133 Identities=17% Similarity=0.088 Sum_probs=78.7
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE--EEecccCC-----------ChhHH----------H
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV--LLAACDTF-----------RAAAY----------E 144 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V--~l~~~d~~-----------~~~~~----------~ 144 (302)
++.+-++++..|..++|+|+||+|||||++.|+.- .-+.-.| .+.|.++. +.... +
T Consensus 95 LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~ 173 (582)
T KOG0062|consen 95 LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLT 173 (582)
T ss_pred hhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccch
Confidence 46677888999999999999999999999999981 1111111 01222221 11000 0
Q ss_pred HHHHhcc-cCCCCeeec----CCC-CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhc
Q psy2881 145 QLLILGK-YNDVPVISE----KKI-TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIF 215 (302)
Q Consensus 145 ql~~~~~-~~~~~~~~~----~~~-~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~ 215 (302)
....+.. ..++.|-.. ... ..-.=.++-+||||+..+||+||||||| |..+-..+-+.|..+ ..|++
T Consensus 174 l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~l 249 (582)
T KOG0062|consen 174 LEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSL 249 (582)
T ss_pred HHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEE
Confidence 0011110 112222110 000 0000123445999999999999999999 777776666666554 56899
Q ss_pred cccceeehhh
Q psy2881 216 ELPYEIFLII 225 (302)
Q Consensus 216 ~~~hd~~lvl 225 (302)
++|||..+.=
T Consensus 250 iVSHDr~FLn 259 (582)
T KOG0062|consen 250 IVSHDRNFLN 259 (582)
T ss_pred EEeccHHHHH
Confidence 9999987643
No 402
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.47 E-value=2.4e-14 Score=124.80 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhC----------CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 168 AIAFNAINIAQKK----------NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 168 ~~~~~~la~al~~----------~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+..+-++++|++. +|+++|+|||+ |+.....+.+.|.++.+. +.+++++||+..++..
T Consensus 128 ~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~~~~~ 198 (213)
T cd03279 128 ETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEELKER 198 (213)
T ss_pred HHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchHHHHh
Confidence 3444458888864 67999999997 888888899999888654 7799999998776543
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.43 E-value=1.2e-13 Score=119.12 Aligned_cols=128 Identities=14% Similarity=0.041 Sum_probs=70.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHH-Hhccc---CCCCeeecC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLL-ILGKY---NDVPVISEK 161 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~-~~~~~---~~~~~~~~~ 161 (302)
.+.++++++ .|++++|+||||+||||+++.|++...- ..|. .+.+. ...-|.. .+... .++..-...
T Consensus 15 ~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a~-----~~~~q~~~l~~~~~~~d~l~~~~s~ 86 (199)
T cd03283 15 RVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCAS-----SFELPPVKIFTSIRVSDDLRDGISY 86 (199)
T ss_pred eecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEecC-----ccCcccceEEEeccchhccccccCh
Confidence 355666555 5799999999999999999999987642 2232 11111 0100100 00000 000000000
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH-HHHHHHHHhchhhccccceeehh
Q psy2881 162 KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR-ELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 162 ~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~-~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.. .....+.+.+.++-..+|+++|+|||+ |+.....+.. .+..+.+ .+.+++++||+..++
T Consensus 87 ~~-~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~ 151 (199)
T cd03283 87 FY-AELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELA 151 (199)
T ss_pred HH-HHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHH
Confidence 00 011222333433322389999999996 7766665544 5666654 478899999987764
No 404
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.42 E-value=3e-13 Score=116.76 Aligned_cols=127 Identities=16% Similarity=0.078 Sum_probs=70.5
Q ss_pred CCCcceecCCC-eEEEEEcCCCCCHHHHHHHHH-hHhhhCCC-eEEEecccCCChhHHHHHHHhcccCCCC-eee-cCCC
Q psy2881 89 EKPLIFKKCKP-FVIMIVGVNGVGKTTTIGKLA-NYFKKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVP-VIS-EKKI 163 (302)
Q Consensus 89 l~~i~l~~~~g-~ii~lvGpnGsGKTTll~~La-g~~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~-~~~~ 163 (302)
.-++||++.+| ++++|+||||+||||+++.|+ +.+.+..| .|-... ....+..+|+ ....+.. ... ....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~--~~~~~~~~~~---~~~lg~~~~l~~~~s~ 91 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE--GSSLPVFENI---FADIGDEQSIEQSLST 91 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc--cccCcCccEE---EEecCchhhhhcCcch
Confidence 34678999998 589999999999999999998 33333333 222110 0001111111 0001100 000 0000
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH-HHHHHHHHhchhhccccceee
Q psy2881 164 TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR-ELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 164 ~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~-~L~~l~~~~~~~i~~~~hd~~ 222 (302)
..........++++ +.+|+++|+|||+ |+.....++. .+..+.+ .+.+++++||+..
T Consensus 92 fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~~ 152 (200)
T cd03280 92 FSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYGE 152 (200)
T ss_pred HHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHHH
Confidence 01111222224443 5799999999997 7777676754 4566543 4778999999743
No 405
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.42 E-value=3.5e-13 Score=116.52 Aligned_cols=129 Identities=10% Similarity=0.003 Sum_probs=70.6
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh-hhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHH-H
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF-KKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPA-A 168 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~-~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~-~ 168 (302)
+.++++.+|++++|+|||||||||+++.|++.. ....|..... ...+.+...++ + ...+..-.......... .
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~--~~~~i~~~dqi--~-~~~~~~d~i~~~~s~~~~e 95 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA--ESASIPLVDRI--F-TRIGAEDSISDGRSTFMAE 95 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc--cccccCCcCEE--E-EEecCcccccCCceeHHHH
Confidence 346777789999999999999999999999543 3444432211 10111111110 0 00000000000000111 1
Q ss_pred HHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHHhchhhccccceeehhh
Q psy2881 169 IAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 169 ~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
...-..+.+.+.+|+++|+|||+ |+.....+... +..+. ..+.+++++||+..++.
T Consensus 96 ~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~-~~~~~vi~~tH~~~~~~ 155 (202)
T cd03243 96 LLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL-EKGCRTLFATHFHELAD 155 (202)
T ss_pred HHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEECChHHHHH
Confidence 11111223456899999999996 77666666554 44444 34778999999866543
No 406
>KOG0066|consensus
Probab=99.40 E-value=5.7e-13 Score=123.79 Aligned_cols=130 Identities=19% Similarity=0.179 Sum_probs=79.1
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE--------EecccCC-----ChhHHHHHHHhcccCCC
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL--------LAACDTF-----RAAAYEQLLILGKYNDV 155 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~--------l~~~d~~-----~~~~~~ql~~~~~~~~~ 155 (302)
+.+++|-+.--..+|||||||+||||+++.|.|-+.|+.|... +.++-.. ...+.+ ++.+.+++
T Consensus 603 FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~E---yLqr~FNl 679 (807)
T KOG0066|consen 603 FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVE---YLQRKFNL 679 (807)
T ss_pred hhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHH---HHHHhcCC
Confidence 3445566666678999999999999999999999999887543 2221100 001111 22222333
Q ss_pred Cee--------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhch
Q psy2881 156 PVI--------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEK 212 (302)
Q Consensus 156 ~~~--------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~ 212 (302)
|+. ...++.. .++-++|......||+||||||+ |..+...+-+.+. ....
T Consensus 680 pyq~ARK~LG~fGL~sHAHTikikdLSGGQ---KaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIn----ey~G 752 (807)
T KOG0066|consen 680 PYQEARKQLGTFGLASHAHTIKIKDLSGGQ---KARVALAELALGGPDVLILDEPTNNLDIESIDALAEAIN----EYNG 752 (807)
T ss_pred ChHHHHHHhhhhhhhhccceEeeeecCCcc---hHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHH----hccC
Confidence 221 1112222 22334555557899999999998 5554444444444 4455
Q ss_pred hhccccceeehhhcCC
Q psy2881 213 KIFELPYEIFLIIDGN 228 (302)
Q Consensus 213 ~i~~~~hd~~lvl~~~ 228 (302)
.+++++||-.++....
T Consensus 753 gVi~VsHDeRLi~eT~ 768 (807)
T KOG0066|consen 753 GVIMVSHDERLIVETD 768 (807)
T ss_pred cEEEEecccceeeecC
Confidence 7889999988877654
No 407
>KOG2355|consensus
Probab=99.40 E-value=4.6e-13 Score=113.41 Aligned_cols=135 Identities=19% Similarity=0.141 Sum_probs=96.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH---HHH----hcccC----CC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ---LLI----LGKYN----DV 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q---l~~----~~~~~----~~ 155 (302)
|++-++|++++.|....+||.|||||||++++|+|-.-..+|.|.+.|.+.|+....+- +.+ |.... .+
T Consensus 28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agev 107 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEV 107 (291)
T ss_pred ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccc
Confidence 66778899999999999999999999999999999877777999999998875221110 001 11110 11
Q ss_pred Cee---------ecCCCCCH-----------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 156 PVI---------SEKKITDP-----------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 156 ~~~---------~~~~~~~~-----------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
|.. ..-.+.++ .+..+-.|++.+++..+++|+||-| |.-.+..++
T Consensus 108 plq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLL 187 (291)
T KOG2355|consen 108 PLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLL 187 (291)
T ss_pred cccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHH
Confidence 110 00001111 0111112778899999999999998 777888999
Q ss_pred HHHHHHHHHhchhhcccccee
Q psy2881 201 RELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~ 221 (302)
+.+++-+++.+.+++.+||-.
T Consensus 188 eFlkeEce~RgatIVYATHIF 208 (291)
T KOG2355|consen 188 EFLKEECEQRGATIVYATHIF 208 (291)
T ss_pred HHHHHHHhhcCcEEEEEeeec
Confidence 999999999999999999943
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.40 E-value=8.9e-13 Score=123.09 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=85.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCe---EEEecccCC----ChhHHHHHHHhccc--CCCCeee-------
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS---VLLAACDTF----RAAAYEQLLILGKY--NDVPVIS------- 159 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~---V~l~~~d~~----~~~~~~ql~~~~~~--~~~~~~~------- 159 (302)
+..||+++++||||-||||+++.|||.++|++|+ +.+.=++.+ ..+.++++-.-... .+-+++.
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl 443 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL 443 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCcc
Confidence 4568999999999999999999999999999885 111101100 11222332111111 1111100
Q ss_pred --------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 160 --------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 160 --------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
......-.+..+-+||.||.+++|+.|||||. |...+...-..++++....+++.+++.||+.+
T Consensus 444 ~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~ 518 (591)
T COG1245 444 NLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM 518 (591)
T ss_pred chHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceeh
Confidence 00011112344456999999999999999997 88777788889999998888999999999875
No 409
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.40 E-value=3e-12 Score=110.43 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=80.0
Q ss_pred CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC-----C--------------eE--EEecccCCC--hh--HHH
Q psy2881 90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK-----K--------------SV--LLAACDTFR--AA--AYE 144 (302)
Q Consensus 90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~-----g--------------~V--~l~~~d~~~--~~--~~~ 144 (302)
+++++++.+| +.+|+||||+||||++..|...+.... | .| .+.....+. .. ...
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 91 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQD 91 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHH
Confidence 4566777666 889999999999999999875432210 1 11 111111111 10 111
Q ss_pred HHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH----hCCCCeEEEcCCC---CccchHHHHHHHHHHHHH--hchhhc
Q psy2881 145 QLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ----KKNTDIVIVDTSG---RLSTQSHLMRELKKIKKV--IEKKIF 215 (302)
Q Consensus 145 ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al----~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~--~~~~i~ 215 (302)
+...+.+. .-............+..+-.|++|+ +.+|+++|+|||+ |......+++.|.++.+. .+.+++
T Consensus 92 ~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~ii 170 (198)
T cd03276 92 MARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIF 170 (198)
T ss_pred HHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 22222222 0000001111122333444577777 5899999999997 888888899999888654 235788
Q ss_pred cccceeehhhcC
Q psy2881 216 ELPYEIFLIIDG 227 (302)
Q Consensus 216 ~~~hd~~lvl~~ 227 (302)
+++|++..+.+.
T Consensus 171 i~th~~~~i~~~ 182 (198)
T cd03276 171 ITPQDISGLASS 182 (198)
T ss_pred EECCcccccccc
Confidence 999998876543
No 410
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.38 E-value=3.3e-12 Score=114.41 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCC---CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 170 AFNAINIAQKKN---TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 170 ~~~~la~al~~~---~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+-.||++++.+ |+++|+|||+ |+.....+++.|.++.+. +.++++++|+..++
T Consensus 176 QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiitH~~~~i 235 (261)
T cd03271 176 QRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVI 235 (261)
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence 334489999986 7999999997 888899999999998754 78999999987653
No 411
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.37 E-value=2e-12 Score=116.25 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH-HhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL-ILGKYNDVPVISEKKITDPAAIAFNAINIAQ 178 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~al 178 (302)
..++|+|||||||||+++.|++.+.|..|+|.+.|.++........+. .+.......+.....-.+...........+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 578999999999999999999999999999999998875332211221 1111111111110000111111112233344
Q ss_pred hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 179 KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 179 ~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
+.+|+++++|||+... .+...+..+. .|.++++++|+..
T Consensus 192 ~~~P~villDE~~~~e---~~~~l~~~~~--~G~~vI~ttH~~~ 230 (270)
T TIGR02858 192 SMSPDVIVVDEIGREE---DVEALLEALH--AGVSIIATAHGRD 230 (270)
T ss_pred hCCCCEEEEeCCCcHH---HHHHHHHHHh--CCCEEEEEechhH
Confidence 5799999999998432 2333344432 4788999999743
No 412
>KOG0927|consensus
Probab=99.35 E-value=1.3e-12 Score=124.07 Aligned_cols=135 Identities=18% Similarity=0.134 Sum_probs=84.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCe--EEEecccCC--ChhHH-----------HHHHHhcc
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS--VLLAACDTF--RAAAY-----------EQLLILGK 151 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~--V~l~~~d~~--~~~~~-----------~ql~~~~~ 151 (302)
.++++..|++.+|+.++|+|||||||||++++|++-..|..-+ ++....... ...+. ..+.++.+
T Consensus 89 ~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E 168 (614)
T KOG0927|consen 89 ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAE 168 (614)
T ss_pred eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999998865433 333333221 00000 01111111
Q ss_pred cCC------------------------------------CCeeecC-----CCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 152 YND------------------------------------VPVISEK-----KITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 152 ~~~------------------------------------~~~~~~~-----~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
.+. ..+.... ....-.-..+-+|||++..+|+++|||||
T Consensus 169 ~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEP 248 (614)
T KOG0927|consen 169 DLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEP 248 (614)
T ss_pred HHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCC
Confidence 110 0000000 00000112223499999999999999999
Q ss_pred C---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
+ |+.+...+-+.|.++.+. ++++++|+..+.
T Consensus 249 tnhLDleA~~wLee~L~k~d~~---~lVi~sh~QDfl 282 (614)
T KOG0927|consen 249 TNHLDLEAIVWLEEYLAKYDRI---ILVIVSHSQDFL 282 (614)
T ss_pred ccCCCHHHHHHHHHHHHhccCc---eEEEEecchhhh
Confidence 8 888888888888877431 567778865543
No 413
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.34 E-value=1.3e-12 Score=109.09 Aligned_cols=125 Identities=12% Similarity=0.085 Sum_probs=77.8
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHH
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIA 170 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~ 170 (302)
+.++.+.++.++.|+||||+||||+++.++...-...+.+.- ..+. +.+.. .+ .....++.........+..
T Consensus 13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~-~~g~~-----~~-~~~~~~i~~~~~lS~G~~~ 84 (162)
T cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV-KAGCI-----VA-AVSAELIFTRLQLSGGEKE 84 (162)
T ss_pred ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc-cCCCc-----ce-eeEEEEehheeeccccHHH
Confidence 345555566799999999999999999988777655544333 1111 00100 00 0000000000011112333
Q ss_pred HHHHHHHHhC----CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 171 FNAINIAQKK----NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 171 ~~~la~al~~----~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
...+++++.. +|+++|+|||+ |+.....+.+.+.++... +.+++++||+..+.
T Consensus 85 ~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~ 144 (162)
T cd03227 85 LSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELA 144 (162)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHH
Confidence 4457777765 78999999997 888888888888887665 77889999987653
No 414
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.33 E-value=2.7e-12 Score=125.23 Aligned_cols=133 Identities=16% Similarity=0.141 Sum_probs=89.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec-cc-------CC-Ch-hHHHHHHHhcccCC--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA-CD-------TF-RA-AAYEQLLILGKYND-- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~-~d-------~~-~~-~~~~ql~~~~~~~~-- 154 (302)
..+++++|++++|+-+.|.|||||||||+++.|||+.+--+|+|..-. .+ +| .. .-++++. |++...
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~-YP~~~~~~ 485 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALC-YPNAAPDF 485 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHh-CCCCCCCC
Confidence 357789999999999999999999999999999999998788876652 21 11 11 1223332 222211
Q ss_pred -------------CCeee-cCC-------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHh
Q psy2881 155 -------------VPVIS-EKK-------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVI 210 (302)
Q Consensus 155 -------------~~~~~-~~~-------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~ 210 (302)
++-+. ... .....+..+-++||.+.++|++++|||+| |..+...+++.+++-. .
T Consensus 486 ~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p 563 (604)
T COG4178 486 SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--P 563 (604)
T ss_pred ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--C
Confidence 11000 000 01123334445999999999999999998 8888888888887632 3
Q ss_pred chhhccccceee
Q psy2881 211 EKKIFELPYEIF 222 (302)
Q Consensus 211 ~~~i~~~~hd~~ 222 (302)
+.+++.+.|...
T Consensus 564 ~~tvISV~Hr~t 575 (604)
T COG4178 564 DATVISVGHRPT 575 (604)
T ss_pred CCEEEEeccchh
Confidence 567777778543
No 415
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.33 E-value=2.6e-12 Score=114.57 Aligned_cols=53 Identities=4% Similarity=0.058 Sum_probs=42.5
Q ss_pred HHHHHHHHHhC----CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 170 AFNAINIAQKK----NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 170 ~~~~la~al~~----~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+-+|+++++. .|+++|+|||+ |+.....+.+.|.++.+. +.+++++||+..+
T Consensus 162 ~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~ 221 (247)
T cd03275 162 TMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEF 221 (247)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHH
Confidence 33458888875 48999999997 888888899999988654 7789999998543
No 416
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.32 E-value=5.3e-12 Score=112.76 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=40.7
Q ss_pred HHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 169 IAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 169 ~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
..+-++|++++ .+|+++|+|||+ |+.....+++.|+++.+ +.+++++||+.
T Consensus 172 ~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~--g~~ii~iSH~~ 229 (251)
T cd03273 172 RSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK--GSQFIVVSLKE 229 (251)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECCH
Confidence 33345888876 578999999997 88888889999988753 67889999973
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=4.3e-12 Score=109.86 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=72.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITD 165 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~ 165 (302)
.+.++++++..+|++++|+||||+||||+++.++++.-- .-|- .+ -....+....+++. ...+..-........
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~-~v-pa~~~~l~~~d~I~---~~~~~~d~~~~~~S~ 91 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC-FV-PAEYATLPIFNRLL---SRLSNDDSMERNLST 91 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC-Cc-chhhcCccChhhee---EecCCccccchhhhH
Confidence 467889999999999999999999999999999987532 1121 11 11111111111110 011110000000000
Q ss_pred HHHHHHH-HHHHHHhCCCCeEEEcCCC---CccchHHH-HHHHHHHHHHhchhhccccceeehh
Q psy2881 166 PAAIAFN-AINIAQKKNTDIVIVDTSG---RLSTQSHL-MRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 166 ~~~~~~~-~la~al~~~~~llllDEP~---d~~~~~~l-~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
......+ ..+.+++.+|+++|+|||+ |+.....+ ...+..+.+ .+.+++++||+..++
T Consensus 92 fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~ 154 (204)
T cd03282 92 FASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIA 154 (204)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence 0111111 1223456889999999996 45443333 334455544 378999999987664
No 418
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.30 E-value=5.1e-12 Score=110.11 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhC----CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 169 IAFNAINIAQKK----NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 169 ~~~~~la~al~~----~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
..+-.+++|++. +|+++++|||+ |+.....+.+.++++.+ +.++++++|+.
T Consensus 133 ~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~ 190 (212)
T cd03274 133 KTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN 190 (212)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH
Confidence 334458888863 58999999997 88899999999998753 45677788863
No 419
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.30 E-value=5.1e-12 Score=116.88 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=94.5
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--------hhCCCeEEEecccC-----------CC-hhHHHH
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--------KKRKKSVLLAACDT-----------FR-AAAYEQ 145 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--------~~~~g~V~l~~~d~-----------~~-~~~~~q 145 (302)
..+++|+||++++|++++++|++|+||||++++|+|.. +|++|.|.+-.... ++ ....+|
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 35789999999999999999999999999999999875 47788887643211 01 111223
Q ss_pred HHHhcccCC----------CC----eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881 146 LLILGKYND----------VP----VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK 208 (302)
Q Consensus 146 l~~~~~~~~----------~~----~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~ 208 (302)
+..-....+ +. +..........+.-+..||.++..+|.++++||-. |..+...+..-+.++++
T Consensus 476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaR 555 (593)
T COG2401 476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555 (593)
T ss_pred HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 222111111 10 01111111112222234899999999999999996 88888899999999999
Q ss_pred Hhchhhccccceee
Q psy2881 209 VIEKKIFELPYEIF 222 (302)
Q Consensus 209 ~~~~~i~~~~hd~~ 222 (302)
..+.|.++++|...
T Consensus 556 e~giTlivvThrpE 569 (593)
T COG2401 556 EAGITLIVVTHRPE 569 (593)
T ss_pred HhCCeEEEEecCHH
Confidence 99999999998644
No 420
>KOG0054|consensus
Probab=99.29 E-value=8.1e-12 Score=131.54 Aligned_cols=137 Identities=15% Similarity=0.202 Sum_probs=95.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC--------ChhHHHHHHHhcccCC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF--------RAAAYEQLLILGKYND---- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~--------~~~~~~ql~~~~~~~~---- 154 (302)
+.++|+||++++|+.++++||.|||||+|+..|.|-+++.+|+|.+.|.--| ....++.+ .++..++
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNI-LFG~~~d~~rY 613 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENI-LFGSPYDEERY 613 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhh-hcCccccHHHH
Confidence 3789999999999999999999999999999999999999999988875211 11111111 0111100
Q ss_pred ------------CCee---------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHh
Q psy2881 155 ------------VPVI---------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVI 210 (302)
Q Consensus 155 ------------~~~~---------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~ 210 (302)
+..+ .......-.++++-.+|||.-++.|++|+|.|. |.+....+++..-.- --.
T Consensus 614 ~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~-~L~ 692 (1381)
T KOG0054|consen 614 DKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG-LLR 692 (1381)
T ss_pred HHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHh-hhc
Confidence 0000 111112234566667999999999999999996 888888877766522 123
Q ss_pred chhhccccceeehhh
Q psy2881 211 EKKIFELPYEIFLII 225 (302)
Q Consensus 211 ~~~i~~~~hd~~lvl 225 (302)
++|++++||.+.+.-
T Consensus 693 ~KT~ILVTHql~~L~ 707 (1381)
T KOG0054|consen 693 GKTVILVTHQLQFLP 707 (1381)
T ss_pred CCEEEEEeCchhhhh
Confidence 789999999655433
No 421
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.8e-11 Score=117.24 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=97.8
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH----Hhccc------------
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL----ILGKY------------ 152 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~----~~~~~------------ 152 (302)
++++||++.+|||++|.|-=|||+|-++..|.|..++.+|+|.++|.+.......+-++ +.++.
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI 354 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcH
Confidence 46899999999999999999999999999999988889999999998764322211111 11110
Q ss_pred ---CCCCeeecCC---CCCHH------------------------------HHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 153 ---NDVPVISEKK---ITDPA------------------------------AIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 153 ---~~~~~~~~~~---~~~~~------------------------------~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
..++...... -.+.. ...+-.|++.+..+|++||+|||| |.
T Consensus 355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDV 434 (500)
T COG1129 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDV 434 (500)
T ss_pred HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCccc
Confidence 0001000000 00000 001112999999999999999998 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
.++.++.+.++++++. |.+++++|-|+..++..+
T Consensus 435 GAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~ 468 (500)
T COG1129 435 GAKAEIYRLIRELAAE-GKAILMISSELPELLGLS 468 (500)
T ss_pred chHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhC
Confidence 9999999999999976 888888887766555443
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.22 E-value=3.7e-11 Score=105.27 Aligned_cols=131 Identities=13% Similarity=0.079 Sum_probs=77.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh-HhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC-eeecCCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN-YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKIT 164 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag-~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~~~~~~ 164 (302)
.+..++++.+.+|++++|+||||+||||+++.+++ .+.++.|...+... .+.+..+++ +.. .+.. -... ...
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~--~~~~~~~~i--~~~-~~~~d~~~~-~~S 92 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS--ATLSIFDSV--LTR-MGASDSIQH-GMS 92 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc--eEEeccceE--EEE-ecCcccccc-ccc
Confidence 46778999999999999999999999999999999 56678887665421 222221111 000 0000 0000 000
Q ss_pred CHHHHHHHHHHHH--HhCCCCeEEEcCCC---CccchHH-HHHHHHHHHHHhchhhccccceeehh
Q psy2881 165 DPAAIAFNAINIA--QKKNTDIVIVDTSG---RLSTQSH-LMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 165 ~~~~~~~~~la~a--l~~~~~llllDEP~---d~~~~~~-l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.....+.+ ++.. .+.++.++|+|||+ ++..... ....+..+.+..+.+++++||+..+.
T Consensus 93 tF~~e~~~-~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 93 TFMVELSE-TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG 157 (222)
T ss_pred hHHHHHHH-HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence 01111111 2222 34689999999996 4333333 34455566554477899999987763
No 423
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.22 E-value=5.2e-11 Score=104.09 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=30.3
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+.++++++..+ ++++|+||||+||||+++.+++..
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 56778888765 899999999999999999998754
No 424
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=4.2e-11 Score=104.41 Aligned_cols=132 Identities=12% Similarity=0.113 Sum_probs=71.3
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh--HhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC-eeecCCCCC
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN--YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKITD 165 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag--~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~~~~~~~ 165 (302)
-.++++.-..+.+++|+||||+||||+++.++. ++ +..|...... ..+.+..+|+.. ..+.. -.......-
T Consensus 19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--~~~~~~~d~i~~---~l~~~~si~~~~S~f 92 (213)
T cd03281 19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--SATIGLVDKIFT---RMSSRESVSSGQSAF 92 (213)
T ss_pred cceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--CcEEeeeeeeee---eeCCccChhhccchH
Confidence 334444322237999999999999999999984 33 4455444321 112222122110 00000 000000001
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH-HHHHHHHHHHH--hchhhccccceeehhhc
Q psy2881 166 PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH-LMRELKKIKKV--IEKKIFELPYEIFLIID 226 (302)
Q Consensus 166 ~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~-l~~~L~~l~~~--~~~~i~~~~hd~~lvl~ 226 (302)
..+...-.++++++.+|.++|+|||+ |+..... +...++.+.+. .+.+++++||+..++..
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 11122223556677899999999997 5543333 34566776543 13478899998777543
No 425
>KOG0065|consensus
Probab=99.21 E-value=7e-12 Score=129.79 Aligned_cols=134 Identities=17% Similarity=0.127 Sum_probs=88.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEecccCC------ChhHHHH-------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACDTF------RAAAYEQ------------- 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d~~------~~~~~~q------------- 145 (302)
.+|+||+=-+.||-.++|+|+||||||||++.|||... --.|+|.++|.... +.+..+|
T Consensus 805 qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrES 884 (1391)
T KOG0065|consen 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRES 884 (1391)
T ss_pred EhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHH
Confidence 46788888889999999999999999999999999854 24689999986543 1111111
Q ss_pred HHHhcccC---CCCe----------------------ee--cCCCCCHHHHHHHHHHHHHhCCC-CeEEEcCCC---Ccc
Q psy2881 146 LLILGKYN---DVPV----------------------IS--EKKITDPAAIAFNAINIAQKKNT-DIVIVDTSG---RLS 194 (302)
Q Consensus 146 l~~~~~~~---~~~~----------------------~~--~~~~~~~~~~~~~~la~al~~~~-~llllDEP~---d~~ 194 (302)
|++-+... .++. +. ...+....++-+-.|+--|+.+| -+|+||||| |.+
T Consensus 885 L~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsq 964 (1391)
T KOG0065|consen 885 LRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQ 964 (1391)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHH
Confidence 21111000 0000 00 00111111111111444467889 899999997 999
Q ss_pred chHHHHHHHHHHHHHhchhhcccccee
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
+...+++.++++++ .|.+|+.+-|..
T Consensus 965 aA~~i~~~lrkla~-tGqtIlCTIHQP 990 (1391)
T KOG0065|consen 965 AAAIVMRFLRKLAD-TGQTILCTIHQP 990 (1391)
T ss_pred HHHHHHHHHHHHHh-cCCeEEEEecCC
Confidence 99999999999998 589998888854
No 426
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.20 E-value=5.5e-11 Score=100.84 Aligned_cols=129 Identities=13% Similarity=0.141 Sum_probs=73.0
Q ss_pred ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe-----cccCCChhHHH-HHHHhcccCCCCeeecCC---C
Q psy2881 93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA-----ACDTFRAAAYE-QLLILGKYNDVPVISEKK---I 163 (302)
Q Consensus 93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~-----~~d~~~~~~~~-ql~~~~~~~~~~~~~~~~---~ 163 (302)
.+...++.+.+|+||||||||+++..|.-.+--........ ..+..+.++.. .+...... ....+.+.. -
T Consensus 16 ~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~-~~~~~~~~~~~~~ 94 (178)
T cd03239 16 TVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDK-SYFLVLQGKVEQI 94 (178)
T ss_pred EEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEEC-ceEEecCCcCccc
Confidence 33333333999999999999999998876543111111000 01111111100 00000000 000111110 0
Q ss_pred CCHHHHHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 164 TDPAAIAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 164 ~~~~~~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
....+..+-.++++++ .+|+++++|||+ |+.....+.+.|.++.+. +.++++++|+...
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~ 160 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEM 160 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHH
Confidence 1234445556888775 689999999997 888888899999888654 6789999998654
No 427
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.12 E-value=1.3e-10 Score=99.19 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCHHHHHHHHH-hHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLA-NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQK 179 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~La-g~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~ 179 (302)
++.|.||||+||||+++.++ ..+....|....... .+.+..+++ ...++..-............. ..+++++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~--~~~~~~d~i---l~~~~~~d~~~~~~s~fs~~~-~~l~~~l~ 74 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES--AELPVFDRI---FTRIGASDSLAQGLSTFMVEM-KETANILK 74 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh--eEecccceE---EEEeCCCCchhccccHHHHHH-HHHHHHHH
Confidence 36799999999999999999 444455554332211 111111110 011111100000001111111 22555555
Q ss_pred C--CCCeEEEcCCC---CccchHHHHH-HHHHHHHHhchhhccccceeeh
Q psy2881 180 K--NTDIVIVDTSG---RLSTQSHLMR-ELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 180 ~--~~~llllDEP~---d~~~~~~l~~-~L~~l~~~~~~~i~~~~hd~~l 223 (302)
. +|+++|+|||+ |+.....+.. .++.+.+..+.+++++||+..+
T Consensus 75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l 124 (185)
T smart00534 75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL 124 (185)
T ss_pred hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH
Confidence 5 99999999997 7665555543 4455544346788999998754
No 428
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.12 E-value=1.3e-10 Score=101.27 Aligned_cols=54 Identities=7% Similarity=0.091 Sum_probs=42.5
Q ss_pred HHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhc-hhhccccceeehhhcCC
Q psy2881 175 NIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIE-KKIFELPYEIFLIIDGN 228 (302)
Q Consensus 175 a~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~-~~i~~~~hd~~lvl~~~ 228 (302)
+++++.+|+++|+|||+ |+.....+++.|.++.+..+ .++++++|++..+++.+
T Consensus 142 a~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 142 SLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred HHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 34456899999999997 99999999999999876523 46889999876655443
No 429
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.12 E-value=1.2e-10 Score=102.08 Aligned_cols=126 Identities=12% Similarity=0.040 Sum_probs=67.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITD 165 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~ 165 (302)
.+.++++++..++++++|.||||+||||+++.++-..- ..-|- +.-++.......+ .+...++..-.. .....
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~--~vpa~~~~~~~~~---~il~~~~l~d~~-~~~lS 91 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC--FVPCDSADIPIVD---CILARVGASDSQ-LKGVS 91 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC--CcCcccEEEeccc---eeEeeeccccch-hcCcC
Confidence 46778999988899999999999999999999874321 11220 0001100001000 011111111000 01111
Q ss_pred HHHHHHHHHHHHH--hCCCCeEEEcCC---C---CccchHHHHHHHHHHHHHhchhhccccce
Q psy2881 166 PAAIAFNAINIAQ--KKNTDIVIVDTS---G---RLSTQSHLMRELKKIKKVIEKKIFELPYE 220 (302)
Q Consensus 166 ~~~~~~~~la~al--~~~~~llllDEP---~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd 220 (302)
....-...+++++ +.+|+++|+||| | |..... ...+..+.+..+.+++++||+
T Consensus 92 ~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~--~~il~~l~~~~~~~vlisTH~ 152 (222)
T cd03285 92 TFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLA--WAIAEYIATQIKCFCLFATHF 152 (222)
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHH--HHHHHHHHhcCCCeEEEEech
Confidence 1112222355555 689999999999 4 433322 223344444346788999995
No 430
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.10 E-value=2.3e-09 Score=98.25 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=70.0
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HH----HHHHHhcccCCCCeeec
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AY----EQLLILGKYNDVPVISE 160 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~----~ql~~~~~~~~~~~~~~ 160 (302)
+++++++...++.+++|+||+|||||||+..++..+...+.+|.+.+.|++... +. .++.......++.+...
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSM 102 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeec
Confidence 345567777889999999999999999999999999888899999999876421 11 11211111222222111
Q ss_pred CCC---CCHHHHHHHHHHHHHhCCCCeEEEcCCCCccc
Q psy2881 161 KKI---TDPAAIAFNAINIAQKKNTDIVIVDTSGRLST 195 (302)
Q Consensus 161 ~~~---~~~~~~~~~~la~al~~~~~llllDEP~d~~~ 195 (302)
... ........+.+...-..++|++|+|+||..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~ 140 (300)
T TIGR00750 103 PTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQS 140 (300)
T ss_pred CccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchh
Confidence 111 11222334445555567999999999994433
No 431
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.06 E-value=5.7e-10 Score=120.70 Aligned_cols=50 Identities=8% Similarity=0.191 Sum_probs=44.0
Q ss_pred HHHHHh---CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 174 INIAQK---KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 174 la~al~---~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
||++++ .+|+++|+|||+ |+.....+++.|.++.+. |.++++++|++..+
T Consensus 820 LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i 875 (1809)
T PRK00635 820 LAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMHVV 875 (1809)
T ss_pred HHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH
Confidence 889997 699999999997 888999999999998754 78999999987765
No 432
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.06 E-value=1.2e-10 Score=109.06 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=42.2
Q ss_pred HHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 173 AINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 173 ~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
+||.+++++.|+.++|||+ |...+-+.-..++++++. ++.++++.||+.
T Consensus 223 aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLa 274 (591)
T COG1245 223 AIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLA 274 (591)
T ss_pred HHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHH
Confidence 4899999999999999998 777777788888888765 788999999975
No 433
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=1.1e-09 Score=113.08 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=43.1
Q ss_pred HHHHHhC---CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 174 INIAQKK---NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 174 la~al~~---~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
||++++. +|+++|+|||+ |+.....+++.|.++.+. +.++++++|+..++
T Consensus 839 LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVIvi~H~~~~i 894 (924)
T TIGR00630 839 LAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVVIEHNLDVI 894 (924)
T ss_pred HHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence 8889886 59999999997 888899999999998754 78999999987654
No 434
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.04 E-value=8.9e-10 Score=114.04 Aligned_cols=51 Identities=12% Similarity=0.229 Sum_probs=44.3
Q ss_pred HHHHHHhCCC---CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 173 AINIAQKKNT---DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 173 ~la~al~~~~---~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.||++++.+| +++|+|||+ |+.....+++.|.++.+ .|.++++++|+...+
T Consensus 840 ~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~i 896 (943)
T PRK00349 840 KLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDVI 896 (943)
T ss_pred HHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH
Confidence 3899999999 999999997 88888999999999875 478999999987654
No 435
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.04 E-value=2.1e-10 Score=109.24 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=56.0
Q ss_pred HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEecccCCCh--hHHHHHHH
Q psy2881 77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAACDTFRA--AAYEQLLI 148 (302)
Q Consensus 77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~~d~~~~--~~~~ql~~ 148 (302)
+...+..-+..+++++|+++.+|++++|+|||||||||+++ +++..|.+| +|.+.|.+.+.. .+.+.++.
T Consensus 10 i~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~ 82 (504)
T TIGR03238 10 VKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDE 82 (504)
T ss_pred echHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHH
Confidence 45566666777889999999999999999999999999999 677777666 899999998753 33344443
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.03 E-value=4.3e-10 Score=98.30 Aligned_cols=133 Identities=12% Similarity=0.087 Sum_probs=74.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHHHhcccCCCC-eeecCCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKIT 164 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~~~~~~ 164 (302)
.+.++++++..+|+++.|.||||+||||+++.++...-. +-|--. -++-.+.+...++ +.. ++.. -... ...
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~v--pa~~~~i~~~~~i--~~~-~~~~d~~~~-~~S 91 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDV--PAKSMRLSLVDRI--FTR-IGARDDIMK-GES 91 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCcc--CccccEeccccEE--EEe-cCccccccc-Ccc
Confidence 467789999988999999999999999999999887442 222100 0000111100000 000 0000 0000 000
Q ss_pred CHHH---HHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHHhchhhccccceeehhhcC
Q psy2881 165 DPAA---IAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 165 ~~~~---~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
.... .....+. .+.+|.++|+|||+ ++.....+... +..+.+..+.+++++||+..++...
T Consensus 92 tF~~e~~~~~~il~--~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 92 TFMVELSETANILR--HATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred hHHHHHHHHHHHHH--hCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 1111 1111122 24789999999996 55555555555 5555543378889999988776543
No 437
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.03 E-value=2.2e-09 Score=88.15 Aligned_cols=122 Identities=17% Similarity=0.155 Sum_probs=72.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhc---ccCCCCeeecCCCCC-HHHHHHHHHHH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILG---KYNDVPVISEKKITD-PAAIAFNAINI 176 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~---~~~~~~~~~~~~~~~-~~~~~~~~la~ 176 (302)
+++|.||+|+||||++..+++...+.++.|.+.+.+........++.... ......+........ .........+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 36899999999999999999999888999999988765433322221111 111222222222222 11122223456
Q ss_pred HHhCCCCeEEEcCCC---Ccc---------chHHHHHHHHHHHHHhchhhccccceee
Q psy2881 177 AQKKNTDIVIVDTSG---RLS---------TQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 177 al~~~~~llllDEP~---d~~---------~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
+...+|+++++||+. +.. .....+..|....+..+.++++++|...
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 677899999999997 111 1123333444444445777778887543
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.02 E-value=2.9e-10 Score=115.97 Aligned_cols=126 Identities=16% Similarity=0.103 Sum_probs=71.1
Q ss_pred cceecCCC-eEEEEEcCCCCCHHHHHHHHHhH-hhhCCC-eEEEecccCCChhHHHHHHHhcccCCCC--eeecCCCCCH
Q psy2881 92 LIFKKCKP-FVIMIVGVNGVGKTTTIGKLANY-FKKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVP--VISEKKITDP 166 (302)
Q Consensus 92 i~l~~~~g-~ii~lvGpnGsGKTTll~~Lag~-~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~--~~~~~~~~~~ 166 (302)
+++.+..+ ++++|+||||+||||+++.+++. +.+..| .|..... ...+...++ +. ..+.. .....+....
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~--~~~~~~d~i--~~-~i~~~~si~~~LStfS~ 388 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH--SEIPYFEEI--FA-DIGDEQSIEQNLSTFSG 388 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc--ccccchhhe--ee-ecChHhHHhhhhhHHHH
Confidence 57777666 89999999999999999999998 556655 3332111 111111111 00 00000 0000000000
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH-HHHHHHHHHHhchhhccccceeehh
Q psy2881 167 AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL-MRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 167 ~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l-~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.......+.++ +.+|.++|+|||+ |+.....+ ...+..+.+ .+.+++++||+..+.
T Consensus 389 ~m~~~~~il~~-~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL~ 448 (771)
T TIGR01069 389 HMKNISAILSK-TTENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHHHh-cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence 11111112222 2589999999997 77766666 355555544 577889999987663
No 439
>KOG0066|consensus
Probab=99.01 E-value=6.3e-10 Score=103.78 Aligned_cols=137 Identities=18% Similarity=0.077 Sum_probs=81.8
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEecccCC----------------Chh--------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACDTF----------------RAA-------- 141 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d~~----------------~~~-------- 141 (302)
.+.+.|+.|-.|..++||||||-|||||++.|+...- |..=.|.+..+.+. |..
T Consensus 279 LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L 358 (807)
T KOG0066|consen 279 LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKL 358 (807)
T ss_pred eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456678888899999999999999999999997532 55555666443321 100
Q ss_pred ----------HHHHHHHhccc-CCCCeeecC---------CCCCHH------------HHHHHHHHHHHhCCCCeEEEcC
Q psy2881 142 ----------AYEQLLILGKY-NDVPVISEK---------KITDPA------------AIAFNAINIAQKKNTDIVIVDT 189 (302)
Q Consensus 142 ----------~~~ql~~~~~~-~~~~~~~~~---------~~~~~~------------~~~~~~la~al~~~~~llllDE 189 (302)
+.+.+...+.. ..+...... .+.+.. =.++-.+|||+...|-+++|||
T Consensus 359 ~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDE 438 (807)
T KOG0066|consen 359 MSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDE 438 (807)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecC
Confidence 11111111000 000000000 000000 0011229999999999999999
Q ss_pred CC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 190 SG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 190 P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+ |......+-+.|+-+ .+|.++++||.-++-+-|
T Consensus 439 PTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~VC 476 (807)
T KOG0066|consen 439 PTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDSVC 476 (807)
T ss_pred CccccccceeeehhhHHhhh----hheeEEEecccchHHHHH
Confidence 98 666666666666665 457889999987765544
No 440
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.01 E-value=5.1e-10 Score=102.99 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=72.2
Q ss_pred cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCC-CCHHHHH
Q psy2881 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI-TDPAAIA 170 (302)
Q Consensus 92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~-~~~~~~~ 170 (302)
+++.+..|+.++|+||+||||||+++.|++++++..+.|.+. |....... ..+. +.+...... .......
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~-----~~~~--~~l~~~~~~~~~~~~~~ 207 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLP-----HPNY--VHLFYSKGGQGLAKVTP 207 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCC-----CCCE--EEEEecCCCCCcCccCH
Confidence 356678899999999999999999999999998888866664 33221110 0011 111111110 0111123
Q ss_pred HHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 171 FNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 171 ~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
.+.+..++-.+|+++++|||.+ .+.++.++.+. ..+..++.+.|..
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~----~e~~~~l~a~~-~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG----DEAFDFIRAVN-TGHPGSITTLHAG 253 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC----HHHHHHHHHHh-cCCCeEEEEEeCC
Confidence 3557778889999999999975 33556666665 2233445666753
No 441
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.99 E-value=5.3e-10 Score=95.39 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=58.9
Q ss_pred eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCC--CCCHHHHHH
Q psy2881 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKK--ITDPAAIAF 171 (302)
Q Consensus 94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~--~~~~~~~~~ 171 (302)
+.+.+|+.++|+||||||||||++.|+++++++.|.|.+.+..-.... .... +.+..... .........
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP-------HPNW--VRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC-------CCCE--EEEEEecCCCCCCCccCHH
Confidence 345679999999999999999999999999998898887543322110 0111 11111111 001111233
Q ss_pred HHHHHHHhCCCCeEEEcCCCCc
Q psy2881 172 NAINIAQKKNTDIVIVDTSGRL 193 (302)
Q Consensus 172 ~~la~al~~~~~llllDEP~d~ 193 (302)
+.+..++-.+||+++++|--+.
T Consensus 91 ~~l~~~lR~~pd~i~igEir~~ 112 (186)
T cd01130 91 DLLRSALRMRPDRIIVGEVRGG 112 (186)
T ss_pred HHHHHHhccCCCEEEEEccCcH
Confidence 4566677789999999998764
No 442
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.99 E-value=4.5e-10 Score=86.69 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=42.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
+++++++|++++|++++|+||||||||||++.+. +|++.+.+.|...
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~ 49 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE 49 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH
Confidence 4688999999999999999999999999999986 7889999988643
No 443
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.98 E-value=2.2e-09 Score=92.50 Aligned_cols=106 Identities=18% Similarity=0.246 Sum_probs=64.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHHHhcccCCCCeeec-CCCCCHHHHHHHHHHHHH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE-KKITDPAAIAFNAINIAQ 178 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~al 178 (302)
+++|+||+||||||+++.|++.+.+ .++.|.....+.... +.. ...++.+ ..+.+. ....+++++++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~--------~~~--~~~~i~q~~vg~~~-~~~~~~i~~aL 71 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV--------HES--KRSLINQREVGLDT-LSFENALKAAL 71 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc--------ccC--ccceeeecccCCCc-cCHHHHHHHHh
Confidence 7889999999999999999998875 467777665432100 000 1111111 111111 12335678889
Q ss_pred hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 179 KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 179 ~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
..+|+++++||+.|... +..+.+.+. .|..++.+.|...
T Consensus 72 r~~pd~ii~gEird~e~----~~~~l~~a~-~G~~v~~t~Ha~~ 110 (198)
T cd01131 72 RQDPDVILVGEMRDLET----IRLALTAAE-TGHLVMSTLHTNS 110 (198)
T ss_pred cCCcCEEEEcCCCCHHH----HHHHHHHHH-cCCEEEEEecCCc
Confidence 99999999999976543 233333333 3566777778554
No 444
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.97 E-value=1e-08 Score=84.25 Aligned_cols=38 Identities=42% Similarity=0.513 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+++++|++||||||++..++..+.+.++++.+.+.|..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~ 38 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPS 38 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 37899999999999999999999999999999998864
No 445
>KOG0060|consensus
Probab=98.96 E-value=2.3e-09 Score=103.07 Aligned_cols=132 Identities=12% Similarity=0.104 Sum_probs=82.8
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc----C-------C-Ch-hHHHHHHHh-----
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD----T-------F-RA-AAYEQLLIL----- 149 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d----~-------~-~~-~~~~ql~~~----- 149 (302)
+.+++||++..|+.+.|.||||||||+|++.++|+.+..+|++..-..- . + .. .-++|+-+-
T Consensus 450 lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~ 529 (659)
T KOG0060|consen 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAED 529 (659)
T ss_pred eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCcccc
Confidence 3567999999999999999999999999999999998788877543221 1 1 01 112222110
Q ss_pred -----------------------cccC-CCC--e-eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHH
Q psy2881 150 -----------------------GKYN-DVP--V-ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRE 202 (302)
Q Consensus 150 -----------------------~~~~-~~~--~-~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~ 202 (302)
..+. |.. . +.-..-..+.+..+-++||.+.++|++.+|||.|..- ...+-..
T Consensus 530 ~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv-~~dvE~~ 608 (659)
T KOG0060|consen 530 MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAV-TEDVEGA 608 (659)
T ss_pred ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhc-cHHHHHH
Confidence 0000 000 0 0000112234445556899999999999999998322 2234455
Q ss_pred HHHHHHHhchhhccccce
Q psy2881 203 LKKIKKVIEKKIFELPYE 220 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd 220 (302)
+-+..++.|.|.+-++|-
T Consensus 609 ~Yr~~r~~giT~iSVgHR 626 (659)
T KOG0060|consen 609 LYRKCREMGITFISVGHR 626 (659)
T ss_pred HHHHHHHcCCeEEEeccH
Confidence 666666678887777763
No 446
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=1.2e-08 Score=80.73 Aligned_cols=88 Identities=27% Similarity=0.259 Sum_probs=53.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ 178 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al 178 (302)
+..+.|+||+|+||||+++.|+..+......+.+...+........+.. ....................++++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999998866544555555443222111110 0011111111223334445566666
Q ss_pred hCCCCeEEEcCCCC
Q psy2881 179 KKNTDIVIVDTSGR 192 (302)
Q Consensus 179 ~~~~~llllDEP~d 192 (302)
...|++|++||+..
T Consensus 76 ~~~~~viiiDei~~ 89 (148)
T smart00382 76 KLKPDVLILDEITS 89 (148)
T ss_pred hcCCCEEEEECCcc
Confidence 66789999999983
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.91 E-value=1.2e-08 Score=90.03 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=69.1
Q ss_pred ecCCCeEEEEEcCCCCCHHHHH-HHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccC-------CCCeee---cCCC
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTI-GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYN-------DVPVIS---EKKI 163 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll-~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~-------~~~~~~---~~~~ 163 (302)
.+++|++++++||||+||||++ +.+++..++ +.++.+...+.......+++..++-.. .+.+.. ....
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 98 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccC
Confidence 4688999999999999999995 666766554 445555554444333334433222111 010111 0111
Q ss_pred C-CHHHHHHHHHHHHHhCCCCeEEEcCCC-------CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 164 T-DPAAIAFNAINIAQKKNTDIVIVDTSG-------RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 164 ~-~~~~~~~~~la~al~~~~~llllDEP~-------d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
. +........+...-..+|+++++|||+ |+.....+++.++.+.+. +.++ +.+|+...
T Consensus 99 ~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tv-i~t~~~~~ 164 (230)
T PRK08533 99 NSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVI-ILTANPKE 164 (230)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEE-EEEecccc
Confidence 1 111122222333334589999999997 222345677777777554 5544 55666543
No 448
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.89 E-value=8.8e-08 Score=88.62 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=65.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---hHH----HHHHHhcccCCCCeeecCC---CCCH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---AAY----EQLLILGKYNDVPVISEKK---ITDP 166 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---~~~----~ql~~~~~~~~~~~~~~~~---~~~~ 166 (302)
.++-+++|.||+||||||++..|...+...+.+|.+.+.|+... ++. ..+..+....++-...... ....
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 35679999999999999999999999998888999999998532 111 1122222222211111111 1123
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCCCCccch
Q psy2881 167 AAIAFNAINIAQKKNTDIVIVDTSGRLSTQ 196 (302)
Q Consensus 167 ~~~~~~~la~al~~~~~llllDEP~d~~~~ 196 (302)
.....+++...-..++|++|+|++|..++.
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~ 163 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSE 163 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccch
Confidence 345556666666788999999999955443
No 449
>KOG0062|consensus
Probab=98.89 E-value=2.5e-09 Score=101.59 Aligned_cols=130 Identities=16% Similarity=0.070 Sum_probs=79.6
Q ss_pred cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-------------hhHH------------HHH
Q psy2881 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-------------AAAY------------EQL 146 (302)
Q Consensus 92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-------------~~~~------------~ql 146 (302)
+++..+--..++++|+||.||||+++++.+-+.|..|-+.+...--.. .+++ +.+
T Consensus 383 ~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~ 462 (582)
T KOG0062|consen 383 LGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEI 462 (582)
T ss_pred cCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHH
Confidence 333444445789999999999999999999999988877765532100 0000 111
Q ss_pred HHhcccCCCCe------eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccc
Q psy2881 147 LILGKYNDVPV------ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFEL 217 (302)
Q Consensus 147 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~ 217 (302)
+.....+|++- +...++. +..+-++|.+...+|.+|+||||| |..+-..+-..|+.+ +..++++
T Consensus 463 r~hl~~~Gl~g~la~~si~~LSGG---QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~V 535 (582)
T KOG0062|consen 463 RRHLGSFGLSGELALQSIASLSGG---QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLV 535 (582)
T ss_pred HHHHHhcCCCchhhhccccccCCc---chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEE
Confidence 11111222221 1112222 233445788888999999999999 555444444444443 4578899
Q ss_pred cceeehhhcCC
Q psy2881 218 PYEIFLIIDGN 228 (302)
Q Consensus 218 ~hd~~lvl~~~ 228 (302)
|||..++-..+
T Consensus 536 SHd~~fi~~~c 546 (582)
T KOG0062|consen 536 SHDEEFISSLC 546 (582)
T ss_pred ECcHHHHhhcC
Confidence 99988765544
No 450
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=1.1e-08 Score=92.67 Aligned_cols=49 Identities=8% Similarity=0.150 Sum_probs=38.7
Q ss_pred HHHHHHh--C--CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 173 AINIAQK--K--NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 173 ~la~al~--~--~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.++++.+ . +|+++++|||+ |+.....+++.|.++.+ +.++++++|+...
T Consensus 180 ~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~ 235 (276)
T cd03241 180 MLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQV 235 (276)
T ss_pred HHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHH
Confidence 3555433 2 99999999997 88888889999988754 5789999998764
No 451
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.86 E-value=9.6e-09 Score=95.94 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=64.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHHHhcccCCCCeeec-CCCCCHHHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE-KKITDPAAIAFNAI 174 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 174 (302)
.++.++.|.||+|||||||++.+.+.+.+ .+++|.....+.- .. +.. ....+.. ..+.+. ....+++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E------~~--~~~--~~~~i~q~evg~~~-~~~~~~l 188 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE------YV--HRN--KRSLINQREVGLDT-LSFANAL 188 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh------hh--ccC--ccceEEccccCCCC-cCHHHHH
Confidence 45679999999999999999999997764 4677777654321 11 000 0111111 111111 1123557
Q ss_pred HHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccc
Q psy2881 175 NIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 175 a~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
++++-++||+|++||+.|..+.... +. .+ ..|..++.+.|
T Consensus 189 ~~~lr~~pd~i~vgEird~~~~~~~---l~-aa-~tGh~v~~T~H 228 (343)
T TIGR01420 189 RAALREDPDVILIGEMRDLETVELA---LT-AA-ETGHLVFGTLH 228 (343)
T ss_pred HHhhccCCCEEEEeCCCCHHHHHHH---HH-HH-HcCCcEEEEEc
Confidence 8888999999999999876554322 22 22 23555555556
No 452
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.81 E-value=2.8e-08 Score=87.96 Aligned_cols=163 Identities=18% Similarity=0.160 Sum_probs=81.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhH--hhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNA 173 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (302)
+..+ .++++||+||||||+++.|+|. ++...|.+. ..+.+.....+...|+.....+. ....+.. .+.+.
T Consensus 24 i~~p-~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t---~~p~~i~l~~~~~~~~~~~~~~~---~~~~~~~-~v~~~ 95 (240)
T smart00053 24 LDLP-QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT---RRPLILQLINSSTEYAEFLHCKG---KKFTDFD-EVRNE 95 (240)
T ss_pred CCCC-eEEEEcCCCccHHHHHHHHhCCCccccCCCccc---ccceEEEccCCCCcceEEEecCC---cccCCHH-HHHHH
Confidence 3445 5889999999999999999997 444456443 22222222212122332222211 1111222 22222
Q ss_pred HHHHH---h------------------CCCCeEEEcCCCCcc----c-hHHHHHHHHHHHHHhchhhcccccee-ehhhc
Q psy2881 174 INIAQ---K------------------KNTDIVIVDTSGRLS----T-QSHLMRELKKIKKVIEKKIFELPYEI-FLIID 226 (302)
Q Consensus 174 la~al---~------------------~~~~llllDEP~d~~----~-~~~l~~~L~~l~~~~~~~i~~~~hd~-~lvl~ 226 (302)
|..+. . .-|++.|+|+||-.. . ...+.+.+.++.... +-.++++ .+|++
T Consensus 96 i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~y----i~~~~~IIL~Vvd 171 (240)
T smart00053 96 IEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQF----ISKEECLILAVTP 171 (240)
T ss_pred HHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHH----HhCccCeEEEEEE
Confidence 22211 1 128999999999221 1 123334444433321 1113333 34444
Q ss_pred CCCCh--hH-HHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHh
Q psy2881 227 GNTGQ--NT-LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY 270 (302)
Q Consensus 227 ~~~g~--~~-~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~ 270 (302)
+..+. .. ..-++.+...-...-.|+||.|....+..+++++..-
T Consensus 172 a~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~ 218 (240)
T smart00053 172 ANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENK 218 (240)
T ss_pred CCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCC
Confidence 54433 23 3334455433333345999999987766676666553
No 453
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.79 E-value=3.3e-08 Score=85.98 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCeEEEcCCC--------CccchHHHHHHHHHHHH
Q psy2881 172 NAINIAQKKNTDIVIVDTSG--------RLSTQSHLMRELKKIKK 208 (302)
Q Consensus 172 ~~la~al~~~~~llllDEP~--------d~~~~~~l~~~L~~l~~ 208 (302)
..||++++.+|+++++|||+ |+.....+++.++++++
T Consensus 161 ~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 161 LWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 34899999999999999997 66777788888888754
No 454
>PRK13695 putative NTPase; Provisional
Probab=98.78 E-value=2.4e-08 Score=84.19 Aligned_cols=120 Identities=18% Similarity=0.129 Sum_probs=61.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-EecccCCChhHHHH--H-HHh-cc-----cCCC-Cee-ecCCCCCH--
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-LAACDTFRAAAYEQ--L-LIL-GK-----YNDV-PVI-SEKKITDP-- 166 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-l~~~d~~~~~~~~q--l-~~~-~~-----~~~~-~~~-~~~~~~~~-- 166 (302)
.++|+|++|+||||+++.+++.+.+.+-.+. +...+......... + ... .. ..+. ... ......+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg 81 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED 81 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence 4789999999999999999998776332221 22111100000000 0 000 00 0000 000 00000011
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCCC-CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 167 AAIAFNAINIAQKKNTDIVIVDTSG-RLSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 167 ~~~~~~~la~al~~~~~llllDEP~-d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
.......+.+....+|+++++|||+ ........++.+.++. ..+.++++++|+.
T Consensus 82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~ 136 (174)
T PRK13695 82 LERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR 136 (174)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch
Confidence 1112222333445789999999987 2233455777888777 4577888888963
No 455
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.78 E-value=3.8e-08 Score=93.38 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=97.9
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-CChhHHHH----HHHhcccC-C--------
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-FRAAAYEQ----LLILGKYN-D-------- 154 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-~~~~~~~q----l~~~~~~~-~-------- 154 (302)
++++||++..|||++|.|..|-|-+.|+..|+|+.++.+|+|.+.|.|. .+.+..+. +.+.++.. +
T Consensus 274 v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~s 353 (501)
T COG3845 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLS 353 (501)
T ss_pred eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCcc
Confidence 5689999999999999999999999999999999988889999999996 43333221 11111110 0
Q ss_pred ------------CCeeecCCCCCHHHHHH------------------------------HHHHHHHhCCCCeEEEcCCC-
Q psy2881 155 ------------VPVISEKKITDPAAIAF------------------------------NAINIAQKKNTDIVIVDTSG- 191 (302)
Q Consensus 155 ------------~~~~~~~~~~~~~~~~~------------------------------~~la~al~~~~~llllDEP~- 191 (302)
-|+.... -.+...... -.++|-+..+|++|++-.||
T Consensus 354 l~eN~vL~~~~~~~~~~~g-~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTr 432 (501)
T COG3845 354 LAENLVLGRHDKKPFSRGG-FLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTR 432 (501)
T ss_pred HHHHhhhhhcccccccccc-ccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCc
Confidence 0011100 011111000 01889999999999999998
Q ss_pred --CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|....+.+.+.|.+.++. |+.++++|.|+..++.-+
T Consensus 433 GLDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~ls 470 (501)
T COG3845 433 GLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELS 470 (501)
T ss_pred cccHHHHHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhh
Confidence 888888899999888764 888888888777655544
No 456
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.72 E-value=5.6e-08 Score=93.12 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=46.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
.+++++ +++.+|++++|+|+||+|||||++.|++...++.|.|.+.|....
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ 197 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGR 197 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCc
Confidence 367888 999999999999999999999999999999999999999887654
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.72 E-value=1.3e-07 Score=83.74 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=75.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhH------------hhhCCCeEEEecccCCChhHHHHHHHhcccCCC-----Ceeec-
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANY------------FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV-----PVISE- 160 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~------------~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~-----~~~~~- 160 (302)
|.+..|+||.|+||||++-.+|-- ..+..|+|.+.+.+-......+.+..+....+. ..+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 567889999999999999998753 234578888877654433333344443332210 01100
Q ss_pred --------CC-C-CCHHHHHHHHHHHHHhCCCCeEEEcCCC--------CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 161 --------KK-I-TDPAAIAFNAINIAQKKNTDIVIVDTSG--------RLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 161 --------~~-~-~~~~~~~~~~la~al~~~~~llllDEP~--------d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
.. . ..........+..+...+|++|++|... |+.....+++.|.++++..+.++++++|..-
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 00 0 0011122222333446899999999431 4445566888888888888889999999654
No 458
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.71 E-value=1.7e-07 Score=82.79 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=70.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccC-------CCCeeecC------C
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYN-------DVPVISEK------K 162 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~-------~~~~~~~~------~ 162 (302)
+++|.++.+.|++||||||+...++.-....++++.+.+.+-......+++..+.-.. .+.++... .
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccC
Confidence 5789999999999999999999986554456889999887644333333333322110 01111110 0
Q ss_pred CCCHHHHHHHHHHHHH-hCCCCeEEEcCCC---CccchHHHHHH---HHHHHHHhchhhcccccee
Q psy2881 163 ITDPAAIAFNAINIAQ-KKNTDIVIVDTSG---RLSTQSHLMRE---LKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 163 ~~~~~~~~~~~la~al-~~~~~llllDEP~---d~~~~~~l~~~---L~~l~~~~~~~i~~~~hd~ 221 (302)
..... .....+.... ..+|+++++|+|+ +......+.+. ++.+.+ .+.++++++|+.
T Consensus 102 ~~~~~-~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~ 165 (234)
T PRK06067 102 STLAN-KLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPY 165 (234)
T ss_pred cchHH-HHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Confidence 01111 1222222222 2489999999998 43333333333 444443 366777777753
No 459
>KOG0064|consensus
Probab=98.69 E-value=1.8e-08 Score=96.07 Aligned_cols=134 Identities=11% Similarity=0.095 Sum_probs=76.3
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE--------EecccCCC--hhHH---------HHH---
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL--------LAACDTFR--AAAY---------EQL--- 146 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~--------l~~~d~~~--~~~~---------~ql--- 146 (302)
...++|.+++|--+.|+||||||||+++++|+|+.+-..|... +.-+.+|- ...+ +|.
T Consensus 498 v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~k 577 (728)
T KOG0064|consen 498 VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRK 577 (728)
T ss_pred ecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhc
Confidence 4567899999999999999999999999999999886666433 33222220 0001 111
Q ss_pred ----------------HHhcccCC-CCeeecCC-CCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHH
Q psy2881 147 ----------------LILGKYND-VPVISEKK-ITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKK 208 (302)
Q Consensus 147 ----------------~~~~~~~~-~~~~~~~~-~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~ 208 (302)
.+..++.+ ........ -..-.+..+-.+||.+-++|++.++||.|..-+ ..+-..+-+.++
T Consensus 578 g~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvs-idvE~~i~~~ak 656 (728)
T KOG0064|consen 578 GYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVS-IDVEGKIFQAAK 656 (728)
T ss_pred CCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccc-cchHHHHHHHHH
Confidence 11111111 00000000 000112223348899999999999999982111 112233444455
Q ss_pred Hhchhhccccceeeh
Q psy2881 209 VIEKKIFELPYEIFL 223 (302)
Q Consensus 209 ~~~~~i~~~~hd~~l 223 (302)
..|.+.+-++|...+
T Consensus 657 ~~gi~llsithrpsl 671 (728)
T KOG0064|consen 657 DAGISLLSITHRPSL 671 (728)
T ss_pred hcCceEEEeecCccH
Confidence 567777778886543
No 460
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.68 E-value=1.3e-07 Score=80.08 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhccc------CC-CCeeecCCC-CCHH-----
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY------ND-VPVISEKKI-TDPA----- 167 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~------~~-~~~~~~~~~-~~~~----- 167 (302)
++.|.||+|+||||+...++......+.++.+.+.+.......++...++-. .+ ..+...... ....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 3678999999999999988776666778888887654322222222222110 01 111111000 0000
Q ss_pred -HHHHHHHHHHHhCCCCeEEEcCCC---C---ccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 168 -AIAFNAINIAQKKNTDIVIVDTSG---R---LSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 168 -~~~~~~la~al~~~~~llllDEP~---d---~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.........+...+|+++++|+|+ | ......+.+.+..+.+ .+.++++++|+...
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~ 142 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGL 142 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccC
Confidence 111222333456789999999997 4 3334555666666654 37788888886543
No 461
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.67 E-value=8.6e-08 Score=91.50 Aligned_cols=103 Identities=19% Similarity=0.326 Sum_probs=76.1
Q ss_pred HHHHH--HHHHHHHCCCChHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHhhccC-CCcc----eec-CCCeE
Q psy2881 32 NLYNE--LESDLLKADVGFETTQFLLNELKKIIY--SKKLFNTEQVRNVLHNLLVNLLKSLE-KPLI----FKK-CKPFV 101 (302)
Q Consensus 32 ~~~~~--l~~~L~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~l-~~i~----l~~-~~g~i 101 (302)
..|++ |.+.|+++||++++|.+|++.+++.+. +......+.++..+.+.+.+.+.+.. +..+ +.- .++.+
T Consensus 178 ~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~ra~VR~~V~~~L~~~l~~~~a~~y~la~~i~~~k~p~v 257 (475)
T PRK12337 178 VPFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVRRDQLRRKVEALLLEEAGEEVARRYRLLRSIRRPPRPLH 257 (475)
T ss_pred CCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhccCCCeE
Confidence 45666 999999999999999999999999884 33445778888888877777654321 1111 111 35789
Q ss_pred EEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 102 i~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+++.|+||+||||++..||..+.. ..+...|..
T Consensus 258 il~~G~~G~GKSt~a~~LA~~lg~----~~ii~tD~i 290 (475)
T PRK12337 258 VLIGGVSGVGKSVLASALAYRLGI----TRIVSTDAV 290 (475)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC----cEEeehhHH
Confidence 999999999999999999987643 235556653
No 462
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.66 E-value=1.5e-07 Score=79.06 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEec-ccCCChhHHHHHHH-hcccCCCCeeecCC-------------
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAA-CDTFRAAAYEQLLI-LGKYNDVPVISEKK------------- 162 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~-~d~~~~~~~~ql~~-~~~~~~~~~~~~~~------------- 162 (302)
-|+.|+|.||||||||+-.||.... +.+|.=-+.+ .|....+....++. +.......++....
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~ 117 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEAD 117 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhh
Confidence 4899999999999999999987654 3333221111 11111111122221 11111122211100
Q ss_pred ------CCC-----HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 163 ------ITD-----PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 163 ------~~~-----~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+.+ ..+.....+.+.+ .+.-+.|||||- .+..+..++..|.++++. |.-++++||...+..-
T Consensus 118 ~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAi 193 (233)
T COG3910 118 GEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAI 193 (233)
T ss_pred hhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeC
Confidence 000 0111122244443 456899999995 666677788888888765 6678899998776543
No 463
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.60 E-value=5.4e-08 Score=99.73 Aligned_cols=180 Identities=18% Similarity=0.145 Sum_probs=86.0
Q ss_pred ceecC-CCeEEEEEcCCCCCHHHHHHHHHhHh-hhCCC-eEEEecccCCChhHHHHHHHhcccCCCC-eeec-CCCCCHH
Q psy2881 93 IFKKC-KPFVIMIVGVNGVGKTTTIGKLANYF-KKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVP-VISE-KKITDPA 167 (302)
Q Consensus 93 ~l~~~-~g~ii~lvGpnGsGKTTll~~Lag~~-~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~~-~~~~~~~ 167 (302)
++.+. .+.++.|.|||++||||+++.++... -.+.| -|-.. ...+.+..+++ +. ..+.. .... .+.....
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~--~~~~i~~~~~i--~~-~ig~~~si~~~lStfS~~ 394 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPAN--EPSEIPVFKEI--FA-DIGDEQSIEQSLSTFSGH 394 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccC--CCccccccceE--EE-ecCCccchhhchhHHHHH
Confidence 44443 34688999999999999999997552 23333 22211 00011111110 00 00100 0000 0000001
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HHHH-
Q psy2881 168 AIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KEFS- 241 (302)
Q Consensus 168 ~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~f~- 241 (302)
......+.+++ .+|.++|+|||+ |+.....+... +..+.+ .+.+++++||+..+...+..... +... ..|.
T Consensus 395 m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el~~~~~~~~~-v~~~~~~~d~ 471 (782)
T PRK00409 395 MTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKELKALMYNREG-VENASVEFDE 471 (782)
T ss_pred HHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHHHHHHhcCCC-eEEEEEEEec
Confidence 11111233333 689999999997 77666666544 445543 47788999998776543322111 0000 0000
Q ss_pred hhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC
Q psy2881 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI 283 (302)
Q Consensus 242 ~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v 283 (302)
+.+.+..-+ ..+...-..++.++..+|+|-..+...+.+
T Consensus 472 ~~l~~~Ykl---~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~ 510 (782)
T PRK00409 472 ETLRPTYRL---LIGIPGKSNAFEIAKRLGLPENIIEEAKKL 510 (782)
T ss_pred CcCcEEEEE---eeCCCCCcHHHHHHHHhCcCHHHHHHHHHH
Confidence 000010111 112222234788899999997665555444
No 464
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=98.58 E-value=2.9e-07 Score=78.44 Aligned_cols=124 Identities=22% Similarity=0.216 Sum_probs=64.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----------CCCeEEEecccCCChhHHHHHHHhcccCC-----------
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKK----------RKKSVLLAACDTFRAAAYEQLLILGKYND----------- 154 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----------~~g~V~l~~~d~~~~~~~~ql~~~~~~~~----------- 154 (302)
+.+|+++.|.||.|+||||++.-++..+.. ..++|.+.+.+.......+.+....+...
T Consensus 29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecc
Confidence 468999999999999999999988876653 56789998877543222222222111110
Q ss_pred ----CCeeecCCCCCHHHHHHHHHHHHHh--CCCCeEEEcCCC-----Cc---cchHHHHHHHHHHHHHhchhhccccc
Q psy2881 155 ----VPVISEKKITDPAAIAFNAINIAQK--KNTDIVIVDTSG-----RL---STQSHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 155 ----~~~~~~~~~~~~~~~~~~~la~al~--~~~~llllDEP~-----d~---~~~~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
..++.............+.+.+.+. .+|++|++|.-. +. .....++..|+++++..+.+++++.|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H 187 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHH 187 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEE
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 0111111100001111222334333 479999999764 11 11246889999998888888776666
No 465
>PTZ00035 Rad51 protein; Provisional
Probab=98.58 E-value=1.6e-06 Score=80.65 Aligned_cols=174 Identities=12% Similarity=0.074 Sum_probs=93.1
Q ss_pred HHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcc----eecCCCeEEEEEcCCCCCHHHH
Q psy2881 40 DLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLI----FKKCKPFVIMIVGVNGVGKTTT 115 (302)
Q Consensus 40 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~----l~~~~g~ii~lvGpnGsGKTTl 115 (302)
.....|++...|++|++..++.... ...+..++.+.- .. ...+..-...++ =-+++|+++.|.||+||||||+
T Consensus 58 L~~~~gis~~~~~~i~~~~~~~~~~-~~~ta~~~~~~~-~~-~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l 134 (337)
T PTZ00035 58 LCNIKGISEAKVEKIKEAASKLVPM-GFISATEYLEAR-KN-IIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQL 134 (337)
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccc-CCCCHHHHHHhh-cc-CccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHH
Confidence 3345899999999999988876543 223333332210 00 011222111121 1367899999999999999999
Q ss_pred HHHHHhHhh-h-----CCCeE-EEecccCCChhHHHHHHHhcccCCCC--------eeecCCCCC-HHHHHHHHHHHHHh
Q psy2881 116 IGKLANYFK-K-----RKKSV-LLAACDTFRAAAYEQLLILGKYNDVP--------VISEKKITD-PAAIAFNAINIAQK 179 (302)
Q Consensus 116 l~~Lag~~~-~-----~~g~V-~l~~~d~~~~~~~~ql~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~la~al~ 179 (302)
+..++.... | .+|++ ++.+...++..... .+++..++. .+......+ ..............
T Consensus 135 ~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~---~ia~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~ 211 (337)
T PTZ00035 135 CHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV---QIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAE 211 (337)
T ss_pred HHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH---HHHHHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhc
Confidence 999987665 4 46777 55555555443322 223332221 111111111 11111111111123
Q ss_pred CCCCeEEEcCCC---C--ccc-------h---HHHHHHHHHHHHHhchhhccccc
Q psy2881 180 KNTDIVIVDTSG---R--LST-------Q---SHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 180 ~~~~llllDEP~---d--~~~-------~---~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
.++++|++|.-+ + ... + .+++..|+++++..+.+++++.|
T Consensus 212 ~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNq 266 (337)
T PTZ00035 212 ERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQ 266 (337)
T ss_pred cCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecc
Confidence 578999999864 2 110 1 13455566676677777766655
No 466
>PRK09183 transposase/IS protein; Provisional
Probab=98.57 E-value=2.6e-07 Score=82.92 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=37.5
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA 134 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~ 134 (302)
+..++| +.+|+.++|+||+|+||||++..|+......+.+|.+..
T Consensus 93 L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 93 LRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred HhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 345566 788999999999999999999999887767777887764
No 467
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.56 E-value=5.5e-07 Score=84.79 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=74.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe--eecCCCCCHHHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV--ISEKKITDPAAIAFNA 173 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 173 (302)
+.+|+++.|.|++|+||||++..++..+...+++|.+...+-. .+|+...++++++.. +......+.. .+
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs----~~qi~~Ra~rlg~~~~~l~l~~e~~le-~I--- 150 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES----PEQIKLRADRLGISTENLYLLAETNLE-DI--- 150 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC----HHHHHHHHHHcCCCcccEEEEccCcHH-HH---
Confidence 5789999999999999999999999988887788877654321 234444444444321 1111111221 12
Q ss_pred HHHHHhCCCCeEEEcCCC-----C----c---cchHHHHHHHHHHHHHhchhhccccc
Q psy2881 174 INIAQKKNTDIVIVDTSG-----R----L---STQSHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 174 la~al~~~~~llllDEP~-----d----~---~~~~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
++.....+|++|++|+-. + + .....++..|.++++..+.+++++.|
T Consensus 151 ~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvgh 208 (372)
T cd01121 151 LASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGH 208 (372)
T ss_pred HHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 222334689999999952 1 1 11234556677888887888877777
No 468
>KOG0063|consensus
Probab=98.55 E-value=2e-07 Score=87.16 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=78.2
Q ss_pred CCcceecCCC-----eEEEEEcCCCCCHHHHHHHHHhHhhhCCC------eEEEecccC--CChhHHHHH---HHhcccC
Q psy2881 90 KPLIFKKCKP-----FVIMIVGVNGVGKTTTIGKLANYFKKRKK------SVLLAACDT--FRAAAYEQL---LILGKYN 153 (302)
Q Consensus 90 ~~i~l~~~~g-----~ii~lvGpnGsGKTTll~~Lag~~~~~~g------~V~l~~~d~--~~~~~~~ql---~~~~~~~ 153 (302)
.+..+.+..| +++..+|.||.||||+++++||.++|+.| +|.+-.+.+ .+.+.+.|+ +.+...+
T Consensus 353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~ 432 (592)
T KOG0063|consen 353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYM 432 (592)
T ss_pred eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhc
Confidence 3445555444 68999999999999999999999998865 444433222 123333332 1222222
Q ss_pred CCCeeecC--------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcc
Q psy2881 154 DVPVISEK--------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFE 216 (302)
Q Consensus 154 ~~~~~~~~--------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~ 216 (302)
+..+.... ....-.+..+-+++.++-...++.++|||. |...+..--..++++.=..+++-.+
T Consensus 433 ~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafv 512 (592)
T KOG0063|consen 433 HPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFV 512 (592)
T ss_pred CHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhh
Confidence 21111000 000111222334777778889999999997 6554444444555554445677778
Q ss_pred ccceeeh
Q psy2881 217 LPYEIFL 223 (302)
Q Consensus 217 ~~hd~~l 223 (302)
+.||...
T Consensus 513 VEhdfIm 519 (592)
T KOG0063|consen 513 VEHDFIM 519 (592)
T ss_pred hhhHHHH
Confidence 8888654
No 469
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.53 E-value=2e-07 Score=82.07 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=36.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE-ecccCCC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL-AACDTFR 139 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l-~~~d~~~ 139 (302)
.++.+++|.||||||||||++.|++.+++.+|.+.+ ...|-+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 567899999999999999999999999999998666 5555443
No 470
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.52 E-value=1.2e-06 Score=78.81 Aligned_cols=50 Identities=22% Similarity=0.137 Sum_probs=40.2
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccC
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDT 137 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~ 137 (302)
.++.+.--+.+|+++.|.||+|+||||++..++...... +.+|.+...+.
T Consensus 19 ~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 19 VLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred eeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 345554557899999999999999999999998877655 77898887654
No 471
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.47 E-value=2.1e-07 Score=84.66 Aligned_cols=43 Identities=33% Similarity=0.454 Sum_probs=38.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEecccCCC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACDTFR 139 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d~~~ 139 (302)
+.+.++||.|||||||||++++|.+++. |.+|+|.+.+.|-+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 4568999999999999999999999998 678899999988764
No 472
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.46 E-value=6.5e-07 Score=71.39 Aligned_cols=92 Identities=21% Similarity=0.280 Sum_probs=54.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHH
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a 177 (302)
.+..+.|+||+|+||||+++.++..+...+..+.+................ ... .........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~~~ 80 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF--GHF---------------LVRLLFELA 80 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh--hhh---------------hHhHHHHhh
Confidence 466899999999999999999999887666777776554322211110000 000 000112234
Q ss_pred HhCCCCeEEEcCCCCc--cchHHHHHHHHHH
Q psy2881 178 QKKNTDIVIVDTSGRL--STQSHLMRELKKI 206 (302)
Q Consensus 178 l~~~~~llllDEP~d~--~~~~~l~~~L~~l 206 (302)
...++.++++||.... .....+.+.+...
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~ 111 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETL 111 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhc
Confidence 5567899999999733 2333444444443
No 473
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.46 E-value=9.9e-07 Score=84.17 Aligned_cols=50 Identities=22% Similarity=0.151 Sum_probs=43.7
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+++. .+++.+|+.++|+|++|+||||+++.|++..+++.|.|.+.|....
T Consensus 146 aID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ 195 (432)
T PRK06793 146 SIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR 195 (432)
T ss_pred EEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc
Confidence 4555 4899999999999999999999999999999998898888876643
No 474
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.46 E-value=2e-07 Score=101.43 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=41.8
Q ss_pred HHHHHhCC---CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 174 INIAQKKN---TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 174 la~al~~~---~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
||..+..+ +.+++||||+ ++.....+++.|.++.+. |.|++++.||..++-.
T Consensus 1710 La~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~-g~tvivieH~~~~i~~ 1767 (1809)
T PRK00635 1710 IAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVIYIDHDPALLKQ 1767 (1809)
T ss_pred HHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHh
Confidence 67766654 6899999997 777778899999998764 7899999998776544
No 475
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=3.1e-07 Score=82.95 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=26.4
Q ss_pred CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
++.++.+.+| +.+|+|||||||||++..|.-+.
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~ 45 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLA 45 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhc
Confidence 3456666655 78899999999999999987655
No 476
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.44 E-value=3.9e-06 Score=73.11 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=69.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHh-cccCCCCeeecCCCCCHHHH--HHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL-GKYNDVPVISEKKITDPAAI--AFN 172 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~-~~~~~~~~~~~~~~~~~~~~--~~~ 172 (302)
+.+|.++.|.|++||||||++..++......++++.+.+.+-......+++... .+.....++... ..+..+. ...
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 94 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFE-PMDFNEQGRAIQ 94 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEe-CCCHHHHHHHHH
Confidence 578999999999999999999999988777788888876553221222222111 111111122211 1122111 111
Q ss_pred HHHHHHhCCCCeEEEcCCCC-----ccc-------h---HHHHHHHHHHHHHhchhhccccc
Q psy2881 173 AINIAQKKNTDIVIVDTSGR-----LST-------Q---SHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 173 ~la~al~~~~~llllDEP~d-----~~~-------~---~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
.+......+++++++|.-+. ... . ..++..|+.+++..+.+++++.|
T Consensus 95 ~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q 156 (218)
T cd01394 95 ETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQ 156 (218)
T ss_pred HHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecC
Confidence 22222334699999998751 111 1 12334456777777777777766
No 477
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.43 E-value=1.3e-06 Score=84.42 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=74.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe--eecCCCCCHHHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV--ISEKKITDPAAIAFNA 173 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 173 (302)
+.+|+++.|.|++|+||||++..++....+.+++|.+...+-. .+|+...+.++++.. +......+.. ..
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs----~~qi~~ra~rlg~~~~~l~~~~e~~~~----~I 162 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES----LQQIKMRAIRLGLPEPNLYVLSETNWE----QI 162 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC----HHHHHHHHHHcCCChHHeEEcCCCCHH----HH
Confidence 5789999999999999999999999888777778766654321 234443334444321 1111112222 11
Q ss_pred HHHHHhCCCCeEEEcCCC-----C-------ccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 174 INIAQKKNTDIVIVDTSG-----R-------LSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 174 la~al~~~~~llllDEP~-----d-------~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
++.....+|+++++|.-. + .....+.+..|.++++..+.++++++|..
T Consensus 163 ~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvt 222 (454)
T TIGR00416 163 CANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVT 222 (454)
T ss_pred HHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 222334689999999653 1 11123455678888888899999888843
No 478
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.43 E-value=3.4e-07 Score=82.20 Aligned_cols=87 Identities=23% Similarity=0.201 Sum_probs=50.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHH---HHHHHH-
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAA---IAFNAI- 174 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~---~~~~~l- 174 (302)
+.++.|+||+|+||||+++.++..+.+. .+.+...........+.+.......+++.. ..+... ...+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~----~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLVNTRVDAEDLLRMVAADFGLETE----GRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeeeCCCCCHHHHHHHHHHHcCCCCC----CCCHHHHHHHHHHHHH
Confidence 4489999999999999999999887753 333322211122333444455555555421 112111 111212
Q ss_pred HHHHhCCCCeEEEcCCC
Q psy2881 175 NIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 175 a~al~~~~~llllDEP~ 191 (302)
......++.++++||.-
T Consensus 117 ~~~~~~~~~vliiDe~~ 133 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQ 133 (269)
T ss_pred HHHhCCCCeEEEEECcc
Confidence 22334667799999985
No 479
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.41 E-value=5.2e-06 Score=68.92 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
++.++|++||||||+++.+..... +.++.+.-.+
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~--~~~~~~i~~~ 35 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQH--GRKIAVIENE 35 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhccc--CCcEEEEecC
Confidence 678999999999999999887643 3345554333
No 480
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.40 E-value=2.4e-06 Score=75.15 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=65.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHh-hhC------CCeEEEecccCCChhHHHHHHHhcccCC---------CCeee
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYF-KKR------KKSVLLAACDTFRAAAYEQLLILGKYND---------VPVIS 159 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~-~~~------~g~V~l~~~d~~~~~~~~ql~~~~~~~~---------~~~~~ 159 (302)
+++|+++.|.||+|+||||++..++... .+. .+-+++.+.+.+... .+....+..+ +.+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~---rl~~~~~~~~~~~~~~~~~i~~~~ 92 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPE---RLVQIAERFGLDPEEVLDNIYVAR 92 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHH---HHHHHHHHhccChHhHhcCEEEEe
Confidence 5789999999999999999999998653 343 444555544443322 1211111111 11111
Q ss_pred cCCCCCHHHHHHHHHHHH-HhC-CCCeEEEcCCC---C----cc----ch----HHHHHHHHHHHHHhchhhccccc
Q psy2881 160 EKKITDPAAIAFNAINIA-QKK-NTDIVIVDTSG---R----LS----TQ----SHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 160 ~~~~~~~~~~~~~~la~a-l~~-~~~llllDEP~---d----~~----~~----~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
.....+..... ..+... ... ++++|++|.-+ . .. .. ..++..|+++++..+.+++++.|
T Consensus 93 ~~~~~~l~~~l-~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 93 AYNSDHQLQLL-EELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred cCCHHHHHHHH-HHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 11111111111 112222 234 79999999875 1 11 11 24566677777777888776665
No 481
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.40 E-value=1.8e-06 Score=92.71 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHHC-----------CCChHHHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHHHHhhccCCCcceec
Q psy2881 30 DKNLYNELESDLLKA-----------DVGFETTQFLLNELKKIIYSKKLFNTEQVR--NVLHNLLVNLLKSLEKPLIFKK 96 (302)
Q Consensus 30 ~~~~~~~l~~~L~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~l~~i~l~~ 96 (302)
+++...+|+++|.+. +-..+..++|++.+.+.+......+.+.+. +.-.+.+...+ ++..
T Consensus 132 ~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL-------~l~~ 204 (1153)
T PLN03210 132 TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLL-------HLES 204 (1153)
T ss_pred chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHH-------cccc
Confidence 456677888888643 223455677777777766432211211111 11112233332 3455
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEec
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAA 134 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~ 134 (302)
.++++++|+||+|+||||+++.+++.+.. ..|.+.+.+
T Consensus 205 ~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 205 EEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 67899999999999999999999877654 478887754
No 482
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.40 E-value=2.5e-05 Score=70.29 Aligned_cols=100 Identities=25% Similarity=0.270 Sum_probs=69.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-------hHHHHHHHhcccCCCCeeecCCCC---CH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-------AAYEQLLILGKYNDVPVISEKKIT---DP 166 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-------~~~~ql~~~~~~~~~~~~~~~~~~---~~ 166 (302)
....+++|.|+.||||||++-.|...+...+.+|.+...|+.+. +.+-.+.......++-+....+.. ..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 44579999999999999999999999998899999999997642 112222233333343333332222 23
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCCCCccch
Q psy2881 167 AAIAFNAINIAQKKNTDIVIVDTSGRLSTQ 196 (302)
Q Consensus 167 ~~~~~~~la~al~~~~~llllDEP~d~~~~ 196 (302)
.....++++.+-+..+|+||+-|.|--++.
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQse 158 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSE 158 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcch
Confidence 344556677778899999999999854444
No 483
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=2.5e-07 Score=73.64 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=57.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHH
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFN 172 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (302)
.+.++.|.||+|+||||+++.++..+... ...+.+....... ....-...+.+..+.+... ..... ...+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~-~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPLKS---RQTSD-ELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SSSS---TS-HH-HHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCccccc---cCCHH-HHHH
Confidence 46789999999999999999999988652 3445544433322 1222223333333332222 11222 2234
Q ss_pred HHHHHHhCCC-CeEEEcCCCCccchHHHHHHHHHHHHH
Q psy2881 173 AINIAQKKNT-DIVIVDTSGRLSTQSHLMRELKKIKKV 209 (302)
Q Consensus 173 ~la~al~~~~-~llllDEP~d~~~~~~l~~~L~~l~~~ 209 (302)
.+.+.+.+.. .+|++||.-... ....++.|+.+.+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~-~~~~l~~l~~l~~~ 114 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLF-SDEFLEFLRSLLNE 114 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHH-THHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCeEEEEeChHhcC-CHHHHHHHHHHHhC
Confidence 4444454444 499999995332 46777777777553
No 484
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.39 E-value=4.4e-06 Score=73.19 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=69.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHh--cccC-CCCeeecCCCCCHHH--HH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL--GKYN-DVPVISEKKITDPAA--IA 170 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~--~~~~-~~~~~~~~~~~~~~~--~~ 170 (302)
+++|.++.|.||+|+||||++..++......++++.+.+.+.+......++..- .+.. ++.++.. .+... ..
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 96 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEP---SSFEEQSEA 96 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeC---CCHHHHHHH
Confidence 578999999999999999999999877666678888888773322222222211 1111 1111111 12211 11
Q ss_pred HHHHHHHHhCCCCeEEEcCCC---Cc-----cc----h---HHHHHHHHHHHHHhchhhccccc
Q psy2881 171 FNAINIAQKKNTDIVIVDTSG---RL-----ST----Q---SHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 171 ~~~la~al~~~~~llllDEP~---d~-----~~----~---~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
.+.+...+..+++++++|.-+ .. .. . ..++..|.++++..+.+++++.|
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 122222222789999999864 11 11 1 12233466666777877777666
No 485
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=98.39 E-value=1.1e-06 Score=63.50 Aligned_cols=72 Identities=36% Similarity=0.557 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHH-hhh-cCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHH
Q psy2881 9 LKESLSKTACNLKS-LIV-NKKIDKNLYNELESDLLKADVGFETTQFLLNELKK-IIYSKKLFNTEQVRNVLHNLL 81 (302)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l 81 (302)
|+++++++++++.+ .|. ++.+ ++++++|++.|+++||++++|.+|++.+++ ........+.+.+..++++.|
T Consensus 1 L~~~l~kt~~~l~~~~~~~~~~i-~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~~~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 1 LKKGLSKTFKKLSGSIFLTEKDI-EEFLEELEEALIEADVGVEVAEKIIENIKKKLIKKKGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHHHHHCCSSCTHHHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCcccccHHhH-HHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHC
Confidence 56778888777775 333 3457 889999999999999999999999999999 555445556688888887764
No 486
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.38 E-value=2e-06 Score=76.09 Aligned_cols=139 Identities=22% Similarity=0.302 Sum_probs=78.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---hH----HHHHHHhcccCCCCeeecCCCCCHH---
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---AA----YEQLLILGKYNDVPVISEKKITDPA--- 167 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---~~----~~ql~~~~~~~~~~~~~~~~~~~~~--- 167 (302)
+..+++|.||.|+|||||+..|...+...+.+|.+...|+... ++ +-.+..+....++-+..........
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4579999999999999999999999998889999999987532 11 1122233334444344443333332
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCCh--hHHHH-HHHHHhhc
Q psy2881 168 AIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQ--NTLSQ-IKEFSKIL 244 (302)
Q Consensus 168 ~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~--~~~~~-~~~f~~~~ 244 (302)
....+++..+-+.++|+||+-|.|--++...+ . -..|-..+|+..+.|. +.+.. .-.+
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I-------~--------~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---- 168 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVDI-------A--------DMADTVVLVLVPGLGDEIQAIKAGIMEI---- 168 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH-------H--------TTSSEEEEEEESSTCCCCCTB-TTHHHH----
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH-------H--------HhcCeEEEEecCCCccHHHHHhhhhhhh----
Confidence 33445565566789999999999854443322 1 1234455566666554 22221 1122
Q ss_pred CCCeEEEecCCC
Q psy2881 245 RITGLIITKLDG 256 (302)
Q Consensus 245 ~~~~~i~tk~d~ 256 (302)
.|.+++||.|.
T Consensus 169 -aDi~vVNKaD~ 179 (266)
T PF03308_consen 169 -ADIFVVNKADR 179 (266)
T ss_dssp --SEEEEE--SH
T ss_pred -ccEEEEeCCCh
Confidence 27899999993
No 487
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.38 E-value=9.8e-07 Score=82.75 Aligned_cols=91 Identities=11% Similarity=0.160 Sum_probs=52.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhC--C-CeEEEecccCCChhHHHHHHHhcccCCCCeeecC-CCCCHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKR--K-KSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK-KITDPAAIAFN 172 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~--~-g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~-~~~~~~~~~~~ 172 (302)
.++..++|+||||||||||++.|++.+.+. . ++|... .|+..... + .+... ...+.+. .+.+. .....
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~-EdpiE~~~-~---~~~~~--~~~v~Q~~v~~~~-~~~~~ 203 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY-EAPIEFVY-D---EIETI--SASVCQSEIPRHL-NNFAA 203 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe-CCCceEec-c---ccccc--cceeeeeeccccc-cCHHH
Confidence 467899999999999999999999998532 3 355444 44422111 0 01000 0111111 01010 11223
Q ss_pred HHHHHHhCCCCeEEEcCCCCccc
Q psy2881 173 AINIAQKKNTDIVIVDTSGRLST 195 (302)
Q Consensus 173 ~la~al~~~~~llllDEP~d~~~ 195 (302)
++..++-++||++++.|--|..+
T Consensus 204 ~l~~aLR~~Pd~i~vGEiRd~et 226 (358)
T TIGR02524 204 GVRNALRRKPHAILVGEARDAET 226 (358)
T ss_pred HHHHHhccCCCEEeeeeeCCHHH
Confidence 35557778999999999766543
No 488
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.37 E-value=4.8e-06 Score=73.08 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=65.5
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhc-------ccCCCCeeecC------
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILG-------KYNDVPVISEK------ 161 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~-------~~~~~~~~~~~------ 161 (302)
-+++|+++.|.||+|+||||++..++......+.++.+.+.+.......++...++ ....+.+....
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~ 95 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEKED 95 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEEcccccccc
Confidence 36789999999999999999998776432233556666654432211111111111 00011111100
Q ss_pred ----CCCCHHHHHHHHHHHHHh---CCCCeEEEcCCC----Ccc-chHHHHHHHHHHHHHhchhhccccce
Q psy2881 162 ----KITDPAAIAFNAINIAQK---KNTDIVIVDTSG----RLS-TQSHLMRELKKIKKVIEKKIFELPYE 220 (302)
Q Consensus 162 ----~~~~~~~~~~~~la~al~---~~~~llllDEP~----d~~-~~~~l~~~L~~l~~~~~~~i~~~~hd 220 (302)
...+..... ..+..+.. .+++.+++|.++ +.+ ....++..|..+.+..+.++++++|.
T Consensus 96 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 96 EWSLRELSIEELL-NKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred ccccccCCHHHHH-HHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 011222211 11222221 257899999986 222 22344455666666678888888884
No 489
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.37 E-value=4.1e-07 Score=78.87 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
++|.+++|+|||||||||+++.|++++.+ +.+.+...|.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 67999999999999999999999999875 45555566554
No 490
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.36 E-value=4.8e-06 Score=72.79 Aligned_cols=126 Identities=20% Similarity=0.168 Sum_probs=66.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC------CeEEEec-ccCCChhHHHHH-HHhccc-----CCCCeeecCC
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK------KSVLLAA-CDTFRAAAYEQL-LILGKY-----NDVPVISEKK 162 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~------g~V~l~~-~d~~~~~~~~ql-~~~~~~-----~~~~~~~~~~ 162 (302)
+++|+++.|.||+|+||||++..++......+ +.+.+.+ .+.+......++ ..+... .++.+.....
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC
Confidence 57899999999999999999999988754332 4555544 443332221111 111111 0111121111
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C---cc-----c----hHHHHHHHHHHHHHhchhhcccccee
Q psy2881 163 ITDPAAIAFNAINIAQKKNTDIVIVDTSG---R---LS-----T----QSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 163 ~~~~~~~~~~~la~al~~~~~llllDEP~---d---~~-----~----~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
..+........+......++++|++|.-+ . .. . -..++..|+++++..+.+++++.|-.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~ 169 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVR 169 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEe
Confidence 11111111111111123588999999864 1 11 1 12345567777777788887777643
No 491
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.36 E-value=4.5e-06 Score=72.21 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=67.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHH-HHhccc--CCCCeeecCCCCCHHHH--H
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL-LILGKY--NDVPVISEKKITDPAAI--A 170 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql-~~~~~~--~~~~~~~~~~~~~~~~~--~ 170 (302)
+++|.++.|.||+||||||++-.++......++++.+.+.+-+......++ ..+.+. .++.++.. .+.... .
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~ 85 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEV---FDFDEQGVA 85 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEEC---CCHHHHHHH
Confidence 578999999999999999999888876655667788777653322222221 111111 11212221 121111 1
Q ss_pred HHHHHH-HHhCCCCeEEEcCCC---C--ccc-----h---HHHHHHHHHHHHHhchhhccccc
Q psy2881 171 FNAINI-AQKKNTDIVIVDTSG---R--LST-----Q---SHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 171 ~~~la~-al~~~~~llllDEP~---d--~~~-----~---~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
...+.. +-..+|++|++|.-. + ... . ..++..|.++++..+.+++++.|
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 111222 222379999999864 1 111 1 12334466666777777777766
No 492
>PHA02518 ParA-like protein; Provisional
Probab=98.35 E-value=8.2e-06 Score=70.35 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=52.6
Q ss_pred EEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHh
Q psy2881 101 VIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQK 179 (302)
Q Consensus 101 ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~ 179 (302)
++++.+ -.|+||||+...||..+...+.+|.+.+.|++..... +...... +.+.+..... .....+.+.. +.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~--~~~~~~~-~~~~i~~~~~---~~~~~~~l~~-~~ 74 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTD--WAEAREE-GEPLIPVVRM---GKSIRADLPK-VA 74 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHH--HHHhccc-CCCCCchhhc---cHHHHHHHHH-Hh
Confidence 577776 5579999999999999998889999999998754331 1111110 1111111100 0112223333 45
Q ss_pred CCCCeEEEcCCCC
Q psy2881 180 KNTDIVIVDTSGR 192 (302)
Q Consensus 180 ~~~~llllDEP~d 192 (302)
.++|++|+|+|+.
T Consensus 75 ~~~d~viiD~p~~ 87 (211)
T PHA02518 75 SGYDYVVVDGAPQ 87 (211)
T ss_pred ccCCEEEEeCCCC
Confidence 7899999999974
No 493
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.34 E-value=2.5e-06 Score=78.70 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=44.6
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+++.+ +.+.+|+.++|+|+||+|||||+++|++...++.|.+.+.|.+..
T Consensus 59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ 108 (326)
T cd01136 59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGR 108 (326)
T ss_pred EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCc
Confidence 67777 999999999999999999999999999999998888888876644
No 494
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.33 E-value=4.1e-06 Score=80.94 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=72.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe--eecCCCCCHHHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV--ISEKKITDPAAIAFNA 173 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 173 (302)
+.+|+++.|.|++|+||||++..++......+++|.+....-. .+|+...+++++... +......+.. +.
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees----~~qi~~ra~rlg~~~~~l~~~~e~~l~----~i 148 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES----ASQIKLRAERLGLPSDNLYLLAETNLE----AI 148 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc----HHHHHHHHHHcCCChhcEEEeCCCCHH----HH
Confidence 5689999999999999999999999887766778777654321 234443344444311 1111112222 12
Q ss_pred HHHHHhCCCCeEEEcCCC---C------ccc---hHHHHHHHHHHHHHhchhhccccc
Q psy2881 174 INIAQKKNTDIVIVDTSG---R------LST---QSHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 174 la~al~~~~~llllDEP~---d------~~~---~~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
+......+|+++++|+.. . +.. ...++..|.++++..+.+++++.|
T Consensus 149 ~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~h 206 (446)
T PRK11823 149 LATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGH 206 (446)
T ss_pred HHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 222234689999999974 1 111 224555677787777888888777
No 495
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.33 E-value=5.3e-07 Score=90.11 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHHHHhCC---CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 174 INIAQKKN---TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 174 la~al~~~---~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
||.-|... .-+.|||||| -.+..+.+++.|.++.+. |.|++++.|++..+-.+
T Consensus 833 LA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~-GnTViVIEHNLdVIk~A 891 (935)
T COG0178 833 LAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVIEHNLDVIKTA 891 (935)
T ss_pred HHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecccceEeec
Confidence 66555544 4899999997 445566799999999874 88999999987765443
No 496
>PRK13768 GTPase; Provisional
Probab=98.30 E-value=6.3e-06 Score=73.77 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
.++.+.||.||||||++..++..+...+.+|.+.+.|+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 478899999999999999999999887888999888764
No 497
>KOG0065|consensus
Probab=98.30 E-value=4e-07 Score=95.22 Aligned_cols=132 Identities=13% Similarity=0.103 Sum_probs=87.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh---CCCeEEEecccCCChhHHHHHHHhccc-CCCCeee---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK---RKKSVLLAACDTFRAAAYEQLLILGKY-NDVPVIS--- 159 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~---~~g~V~l~~~d~~~~~~~~ql~~~~~~-~~~~~~~--- 159 (302)
.+++|++.-+++|+++.++||.||||||+++.++|-... ..|+|.++|.+...........+.++. ..+|...
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 478899999999999999999999999999999998763 346899999876422111111111110 0111000
Q ss_pred ----------c---CCCCCHHHH---HHH--------------------------------HHHHHHhCCCCeEEEcCCC
Q psy2881 160 ----------E---KKITDPAAI---AFN--------------------------------AINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 160 ----------~---~~~~~~~~~---~~~--------------------------------~la~al~~~~~llllDEP~ 191 (302)
. ....+..+. ..+ .++.+++.++.+++.||++
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 0 000111110 001 1667788999999999997
Q ss_pred ---CccchHHHHHHHHHHHHHhchhhcccc
Q psy2881 192 ---RLSTQSHLMRELKKIKKVIEKKIFELP 218 (302)
Q Consensus 192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~ 218 (302)
|..+.-++.+.|+++++..+.+.+++-
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi 318 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSI 318 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEe
Confidence 889999999999999987776665543
No 498
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.29 E-value=3.2e-06 Score=80.87 Aligned_cols=50 Identities=22% Similarity=0.135 Sum_probs=42.4
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+++.++ ++.+|+.++|+||+|+|||||++.|+++..|+.|.|.+.|.+-.
T Consensus 155 aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergr 204 (450)
T PRK06002 155 VIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGR 204 (450)
T ss_pred Eeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCc
Confidence 455553 78999999999999999999999999999999898888765433
No 499
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.28 E-value=7.9e-07 Score=77.91 Aligned_cols=38 Identities=34% Similarity=0.450 Sum_probs=33.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCC
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTF 138 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~ 138 (302)
+++|.|||||||||+++.|++.+.+ .+++|.+...|-+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 5899999999999999999999975 5678888777755
No 500
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.27 E-value=3e-06 Score=77.09 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=72.6
Q ss_pred HHHHHHHCCCChHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHhhccCCC-cce-----ecCCCeEEEEEcCC
Q psy2881 37 LESDLLKADVGFETTQFLLNELKKIIYSKK--LFNTEQVRNVLHNLLVNLLKSLEKP-LIF-----KKCKPFVIMIVGVN 108 (302)
Q Consensus 37 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~l~~~l~~-i~l-----~~~~g~ii~lvGpn 108 (302)
|-+.|..+|+++..|-++...+.+.+..+. ..+.+++.+.+.+.|.+.....+.. ..+ .-+.+-++.|.|++
T Consensus 22 L~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~G~s 101 (301)
T PRK04220 22 LARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIGGAS 101 (301)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 567888999999999999999999887664 3467788888888877766433221 111 11356789999999
Q ss_pred CCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 109 GVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 109 GsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
||||||+...||..+ +.. .+.+.|..|
T Consensus 102 gsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 102 GVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred CCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 999999999999887 333 345577654
Done!