Query psy2881
Match_columns 302
No_of_seqs 409 out of 2761
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 19:15:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yhs_A FTSY, cell division pro 100.0 1.6E-50 5.3E-55 386.8 32.9 301 1-301 191-495 (503)
2 1vma_A Cell division protein F 100.0 8.3E-49 2.8E-53 357.8 31.0 291 2-301 12-306 (306)
3 2og2_A Putative signal recogni 100.0 1.8E-47 6.3E-52 355.4 33.7 299 2-300 53-359 (359)
4 3e70_C DPA, signal recognition 100.0 1.8E-46 6.1E-51 345.5 26.1 293 3-302 5-326 (328)
5 3b9q_A Chloroplast SRP recepto 100.0 2.8E-45 9.5E-50 334.3 32.9 293 8-300 2-302 (302)
6 1rj9_A FTSY, signal recognitio 100.0 1.4E-45 4.9E-50 336.4 23.4 290 3-301 1-304 (304)
7 1zu4_A FTSY; GTPase, signal re 100.0 1.1E-43 3.9E-48 326.0 32.4 282 17-300 19-310 (320)
8 3dm5_A SRP54, signal recogniti 100.0 1.4E-40 4.8E-45 315.6 32.1 286 5-300 2-295 (443)
9 1ls1_A Signal recognition part 100.0 4.6E-40 1.6E-44 299.1 30.8 285 5-300 1-293 (295)
10 2ffh_A Protein (FFH); SRP54, s 100.0 8.3E-40 2.8E-44 309.8 31.3 285 5-300 1-293 (425)
11 3kl4_A SRP54, signal recogniti 100.0 2.5E-40 8.6E-45 313.8 27.2 274 20-300 10-294 (433)
12 1j8m_F SRP54, signal recogniti 100.0 1.5E-39 5.3E-44 295.7 29.6 275 20-301 11-296 (297)
13 2xxa_A Signal recognition part 100.0 1.1E-35 3.6E-40 283.1 30.8 288 5-301 1-297 (433)
14 2px0_A Flagellar biosynthesis 100.0 6.2E-36 2.1E-40 271.9 22.6 255 30-300 38-296 (296)
15 2j37_W Signal recognition part 100.0 2.7E-33 9.2E-38 270.4 24.3 288 5-301 2-297 (504)
16 2v3c_C SRP54, signal recogniti 100.0 1.2E-33 4E-38 269.0 21.2 284 7-301 2-295 (432)
17 3tif_A Uncharacterized ABC tra 99.9 1.5E-25 5E-30 197.1 7.2 137 87-223 19-208 (235)
18 4g1u_C Hemin import ATP-bindin 99.9 8.2E-25 2.8E-29 195.7 10.0 140 87-226 25-213 (266)
19 3tui_C Methionine import ATP-b 99.9 2.5E-25 8.5E-30 206.4 6.7 137 87-226 42-229 (366)
20 2pcj_A ABC transporter, lipopr 99.9 6.3E-25 2.2E-29 191.7 6.2 137 87-224 18-203 (224)
21 3gfo_A Cobalt import ATP-bindi 99.9 1.2E-24 4.1E-29 195.4 7.8 142 87-228 22-211 (275)
22 3rlf_A Maltose/maltodextrin im 99.9 9.5E-25 3.3E-29 203.7 5.2 142 87-228 17-201 (381)
23 3fvq_A Fe(3+) IONS import ATP- 99.9 1.5E-24 5.3E-29 200.9 5.7 141 87-227 18-205 (359)
24 1g6h_A High-affinity branched- 99.9 7.4E-24 2.5E-28 188.7 8.0 141 87-228 21-220 (257)
25 1ji0_A ABC transporter; ATP bi 99.9 5.1E-24 1.7E-28 187.9 6.3 138 87-225 20-203 (240)
26 1vpl_A ABC transporter, ATP-bi 99.9 1.2E-23 4E-28 187.2 8.5 141 87-228 29-213 (256)
27 2yyz_A Sugar ABC transporter, 99.9 6E-24 2E-28 197.3 6.4 140 87-226 17-199 (359)
28 1z47_A CYSA, putative ABC-tran 99.9 5.1E-24 1.8E-28 197.4 5.9 140 87-226 29-211 (355)
29 2olj_A Amino acid ABC transpor 99.9 1.9E-23 6.5E-28 186.5 9.1 138 87-225 38-223 (263)
30 1b0u_A Histidine permease; ABC 99.9 9.9E-24 3.4E-28 188.3 7.2 138 87-225 20-217 (262)
31 2it1_A 362AA long hypothetical 99.9 5.5E-24 1.9E-28 197.8 5.1 140 87-226 17-199 (362)
32 1sgw_A Putative ABC transporte 99.9 1.6E-23 5.5E-28 181.5 7.0 141 87-228 23-200 (214)
33 1v43_A Sugar-binding transport 99.9 7.8E-24 2.7E-28 197.4 5.2 140 87-226 25-207 (372)
34 2ihy_A ABC transporter, ATP-bi 99.9 1.4E-23 4.7E-28 189.0 6.3 141 87-228 35-230 (279)
35 2yz2_A Putative ABC transporte 99.9 3.3E-23 1.1E-27 185.3 8.6 140 87-227 21-204 (266)
36 2onk_A Molybdate/tungstate ABC 99.9 3.2E-23 1.1E-27 182.7 8.1 137 88-225 14-191 (240)
37 1oxx_K GLCV, glucose, ABC tran 99.9 6.5E-24 2.2E-28 196.9 3.7 139 88-226 20-206 (353)
38 1g29_1 MALK, maltose transport 99.9 1E-23 3.5E-28 196.8 4.6 140 87-226 17-205 (372)
39 3d31_A Sulfate/molybdate ABC t 99.9 1.2E-23 4.2E-28 194.5 4.2 139 88-226 15-193 (348)
40 2ff7_A Alpha-hemolysin translo 99.9 9.3E-23 3.2E-27 180.5 9.6 136 87-224 23-207 (247)
41 2ixe_A Antigen peptide transpo 99.9 4.7E-23 1.6E-27 184.8 7.3 139 87-225 33-221 (271)
42 1mv5_A LMRA, multidrug resista 99.9 7.5E-23 2.6E-27 180.7 7.8 136 87-224 16-201 (243)
43 2qi9_C Vitamin B12 import ATP- 99.9 5.6E-23 1.9E-27 182.1 6.6 137 87-225 14-197 (249)
44 3nh6_A ATP-binding cassette SU 99.9 7.4E-23 2.5E-27 186.2 6.4 138 87-226 68-254 (306)
45 2nq2_C Hypothetical ABC transp 99.9 2.1E-22 7.3E-27 178.8 8.0 139 87-225 19-193 (253)
46 2d2e_A SUFC protein; ABC-ATPas 99.9 1.1E-22 3.9E-27 180.3 5.2 139 87-226 17-208 (250)
47 2pjz_A Hypothetical protein ST 99.9 3.9E-22 1.3E-26 178.0 6.2 137 87-229 19-193 (263)
48 2zu0_C Probable ATP-dependent 99.8 2.7E-22 9.3E-27 179.5 5.0 139 87-226 34-229 (267)
49 2ghi_A Transport protein; mult 99.8 5.2E-22 1.8E-26 177.0 6.5 135 87-224 34-217 (260)
50 2pze_A Cystic fibrosis transme 99.8 4.7E-22 1.6E-26 174.0 4.2 135 87-223 22-192 (229)
51 2cbz_A Multidrug resistance-as 99.8 8.3E-22 2.8E-26 173.3 5.5 136 87-224 19-192 (237)
52 3gd7_A Fusion complex of cysti 99.8 3.7E-21 1.3E-25 180.4 5.7 136 87-225 35-218 (390)
53 3b5x_A Lipid A export ATP-bind 99.8 2.7E-20 9.3E-25 183.6 10.2 136 87-224 357-542 (582)
54 3qf4_B Uncharacterized ABC tra 99.8 1.6E-20 5.5E-25 185.8 7.7 137 87-225 369-554 (598)
55 3b60_A Lipid A export ATP-bind 99.8 2.7E-20 9.2E-25 183.6 9.2 137 87-225 357-543 (582)
56 3qf4_A ABC transporter, ATP-bi 99.8 1.3E-20 4.6E-25 185.9 6.6 137 87-225 357-542 (587)
57 2bbs_A Cystic fibrosis transme 99.8 6.6E-21 2.3E-25 172.3 3.7 137 86-224 51-222 (290)
58 4a82_A Cystic fibrosis transme 99.8 1.5E-20 5E-25 185.3 5.7 138 87-226 355-541 (578)
59 2yl4_A ATP-binding cassette SU 99.8 3.3E-20 1.1E-24 183.5 6.5 136 87-224 358-545 (595)
60 3ozx_A RNAse L inhibitor; ATP 99.8 7.4E-20 2.5E-24 178.5 7.6 135 92-226 287-451 (538)
61 4gp7_A Metallophosphoesterase; 99.8 3.8E-20 1.3E-24 154.5 1.6 131 91-225 1-163 (171)
62 1yqt_A RNAse L inhibitor; ATP- 99.8 3.6E-19 1.2E-23 173.8 5.5 137 88-226 37-223 (538)
63 3j16_B RLI1P; ribosome recycli 99.8 1.1E-18 3.9E-23 172.1 8.8 139 88-226 362-533 (608)
64 3bk7_A ABC transporter ATP-bin 99.8 3.1E-19 1.1E-23 176.4 4.6 135 92-226 375-537 (607)
65 1yqt_A RNAse L inhibitor; ATP- 99.7 2.2E-18 7.6E-23 168.3 9.8 135 92-226 305-467 (538)
66 4f4c_A Multidrug resistance pr 99.7 1.3E-18 4.3E-23 185.6 6.7 136 87-224 1093-1279(1321)
67 3bk7_A ABC transporter ATP-bin 99.7 6.8E-19 2.3E-23 173.9 4.3 137 88-226 107-293 (607)
68 3ux8_A Excinuclease ABC, A sub 99.7 3.7E-18 1.3E-22 171.0 9.6 137 87-224 32-267 (670)
69 3g5u_A MCG1178, multidrug resi 99.7 1.9E-18 6.6E-23 183.7 7.2 138 87-226 1047-1235(1284)
70 3g5u_A MCG1178, multidrug resi 99.7 2E-18 6.9E-23 183.5 7.1 138 87-226 404-590 (1284)
71 4f4c_A Multidrug resistance pr 99.7 5.9E-18 2E-22 180.4 10.3 138 87-226 432-618 (1321)
72 3j16_B RLI1P; ribosome recycli 99.7 1.1E-18 3.9E-23 172.2 2.2 131 95-226 99-286 (608)
73 3ozx_A RNAse L inhibitor; ATP 99.7 2.2E-18 7.5E-23 168.1 3.9 129 96-226 22-202 (538)
74 2iw3_A Elongation factor 3A; a 99.7 4E-18 1.4E-22 174.7 4.6 48 87-134 687-734 (986)
75 2eyu_A Twitching motility prot 99.7 4.5E-17 1.5E-21 145.1 6.1 117 88-222 16-134 (261)
76 3b85_A Phosphate starvation-in 99.7 2.1E-18 7E-23 148.7 -3.7 123 97-226 20-163 (208)
77 3ux8_A Excinuclease ABC, A sub 99.6 4.1E-16 1.4E-20 156.1 9.4 56 168-224 548-609 (670)
78 2iw3_A Elongation factor 3A; a 99.6 3E-16 1E-20 160.9 7.8 136 87-226 449-610 (986)
79 1cr0_A DNA primase/helicase; R 99.6 1.6E-15 5.6E-20 136.8 11.2 134 88-221 24-197 (296)
80 2pt7_A CAG-ALFA; ATPase, prote 99.6 8.8E-17 3E-21 147.9 2.5 117 88-222 160-276 (330)
81 2w0m_A SSO2452; RECA, SSPF, un 99.6 6.5E-15 2.2E-19 127.1 9.9 133 89-221 12-168 (235)
82 2ehv_A Hypothetical protein PH 99.6 1E-14 3.4E-19 127.6 10.1 128 95-224 26-185 (251)
83 4a74_A DNA repair and recombin 99.5 1.3E-14 4.3E-19 125.4 9.8 126 95-223 21-182 (231)
84 3jvv_A Twitching mobility prot 99.5 9.3E-15 3.2E-19 135.6 8.8 114 95-224 119-234 (356)
85 4aby_A DNA repair protein RECN 99.5 3.7E-15 1.3E-19 140.6 5.7 57 165-223 297-358 (415)
86 1tq4_A IIGP1, interferon-induc 99.5 1.1E-15 3.6E-20 144.3 0.4 123 99-222 69-236 (413)
87 2npi_A Protein CLP1; CLP1-PCF1 99.5 1.1E-15 3.7E-20 146.4 0.3 127 91-222 130-299 (460)
88 2i3b_A HCR-ntpase, human cance 99.5 6.1E-16 2.1E-20 131.2 -2.4 115 99-221 1-149 (189)
89 2vf7_A UVRA2, excinuclease ABC 99.5 8E-15 2.8E-19 148.9 4.8 51 173-224 740-796 (842)
90 1tf7_A KAIC; homohexamer, hexa 99.5 4E-14 1.4E-18 137.9 6.4 135 87-224 26-188 (525)
91 1pzn_A RAD51, DNA repair and r 99.4 9.7E-13 3.3E-17 121.8 13.9 177 40-222 70-287 (349)
92 3pih_A Uvrabc system protein A 99.4 2.2E-13 7.6E-18 139.4 10.5 53 171-224 813-871 (916)
93 2r6f_A Excinuclease ABC subuni 99.4 1.8E-13 6.1E-18 139.7 8.6 51 173-224 855-911 (972)
94 1ye8_A Protein THEP1, hypothet 99.4 3E-14 1E-18 119.6 1.0 110 101-219 2-138 (178)
95 3thx_B DNA mismatch repair pro 99.4 1.1E-13 3.6E-18 141.9 5.3 132 87-224 661-799 (918)
96 2ygr_A Uvrabc system protein A 99.4 3.1E-13 1.1E-17 138.4 8.4 51 173-224 873-929 (993)
97 1znw_A Guanylate kinase, GMP k 99.4 1.3E-14 4.4E-19 124.3 -1.7 36 87-124 10-45 (207)
98 3thx_A DNA mismatch repair pro 99.4 1.9E-13 6.6E-18 140.4 6.6 123 88-224 651-788 (934)
99 2ewv_A Twitching motility prot 99.4 3.2E-13 1.1E-17 126.0 7.4 111 96-222 133-245 (372)
100 1z6g_A Guanylate kinase; struc 99.3 2.9E-14 1E-18 123.3 -2.6 45 88-136 12-56 (218)
101 2cvh_A DNA repair and recombin 99.3 5.9E-12 2E-16 107.7 11.9 121 95-222 16-157 (220)
102 1nlf_A Regulatory protein REPA 99.3 2.6E-12 9E-17 114.9 9.7 127 95-224 26-184 (279)
103 3qf7_A RAD50; ABC-ATPase, ATPa 99.3 1.9E-12 6.4E-17 120.5 8.2 56 167-223 283-347 (365)
104 2o8b_B DNA mismatch repair pro 99.3 1.8E-13 6.1E-18 142.1 1.4 136 87-228 770-919 (1022)
105 1wb9_A DNA mismatch repair pro 99.3 1.8E-12 6.2E-17 131.5 8.4 131 87-223 596-732 (800)
106 1tf7_A KAIC; homohexamer, hexa 99.3 7.4E-12 2.5E-16 121.9 12.0 121 94-221 276-417 (525)
107 2qm8_A GTPase/ATPase; G protei 99.3 1.4E-12 4.7E-17 120.2 6.0 106 87-192 43-158 (337)
108 3aez_A Pantothenate kinase; tr 99.3 5.3E-13 1.8E-17 121.7 3.1 48 91-138 81-131 (312)
109 1e69_A Chromosome segregation 99.3 4E-12 1.4E-16 116.3 8.7 54 167-222 223-283 (322)
110 2kjq_A DNAA-related protein; s 99.3 3.9E-12 1.3E-16 103.5 7.5 86 98-220 35-124 (149)
111 1ewq_A DNA mismatch repair pro 99.3 2.4E-12 8.1E-17 130.0 7.2 123 89-224 569-701 (765)
112 3ec2_A DNA replication protein 99.3 4.8E-12 1.6E-16 105.6 7.8 108 93-222 32-144 (180)
113 1htw_A HI0065; nucleotide-bind 99.3 5.9E-13 2E-17 109.5 2.0 49 88-137 22-70 (158)
114 2gza_A Type IV secretion syste 99.3 1.3E-12 4.3E-17 121.5 4.4 120 88-220 164-286 (361)
115 1n0w_A DNA repair protein RAD5 99.3 1.3E-11 4.4E-16 107.2 10.3 124 96-222 21-175 (243)
116 3szr_A Interferon-induced GTP- 99.3 1.6E-12 5.6E-17 128.6 3.4 183 93-286 42-261 (608)
117 3lda_A DNA repair protein RAD5 99.2 2.8E-10 9.6E-15 106.9 15.5 173 43-221 121-328 (400)
118 1s96_A Guanylate kinase, GMP k 99.2 4.2E-12 1.4E-16 109.9 2.1 118 95-225 12-144 (219)
119 2jeo_A Uridine-cytidine kinase 99.2 1.1E-11 3.8E-16 108.7 4.2 37 87-123 13-49 (245)
120 1lw7_A Transcriptional regulat 99.2 2.3E-11 8E-16 113.0 5.8 128 88-219 157-327 (365)
121 2obl_A ESCN; ATPase, hydrolase 99.1 4.8E-12 1.7E-16 116.9 -0.1 48 88-136 61-108 (347)
122 3sop_A Neuronal-specific septi 99.1 7.4E-12 2.5E-16 111.8 -0.8 38 101-138 4-41 (270)
123 2dr3_A UPF0273 protein PH0284; 99.1 8.3E-10 2.9E-14 95.8 12.2 127 95-222 19-174 (247)
124 2dpy_A FLII, flagellum-specifi 99.1 1.9E-11 6.5E-16 116.3 1.4 47 88-135 147-193 (438)
125 3euj_A Chromosome partition pr 99.0 6.1E-11 2.1E-15 113.6 3.0 51 87-138 18-68 (483)
126 1sq5_A Pantothenate kinase; P- 99.0 1.5E-10 5E-15 105.2 4.3 40 97-136 78-119 (308)
127 3qkt_A DNA double-strand break 98.9 2.5E-09 8.6E-14 98.3 9.6 49 173-222 264-315 (339)
128 2v9p_A Replication protein E1; 98.9 2.9E-10 9.8E-15 103.0 2.6 45 87-134 114-158 (305)
129 2qag_B Septin-6, protein NEDD5 98.9 2.5E-09 8.6E-14 100.9 8.8 35 89-123 30-66 (427)
130 1sxj_E Activator 1 40 kDa subu 98.9 3.8E-10 1.3E-14 103.6 3.1 118 102-224 39-177 (354)
131 2p67_A LAO/AO transport system 98.9 2.2E-09 7.6E-14 98.8 7.8 52 89-140 46-97 (341)
132 2oap_1 GSPE-2, type II secreti 98.9 5.7E-10 1.9E-14 108.0 3.1 94 88-194 249-346 (511)
133 2qnr_A Septin-2, protein NEDD5 98.8 7.5E-10 2.6E-14 100.2 2.7 44 87-137 12-56 (301)
134 2bbw_A Adenylate kinase 4, AK4 98.8 2.8E-09 9.7E-14 93.2 5.2 38 98-135 26-66 (246)
135 3lnc_A Guanylate kinase, GMP k 98.8 9.5E-10 3.2E-14 95.3 2.0 36 88-123 16-52 (231)
136 2zr9_A Protein RECA, recombina 98.8 1E-08 3.4E-13 94.7 8.5 116 96-221 58-198 (349)
137 4ad8_A DNA repair protein RECN 98.8 3.2E-09 1.1E-13 103.0 5.0 48 174-223 408-460 (517)
138 1pui_A ENGB, probable GTP-bind 98.8 1.5E-08 5.3E-13 85.6 8.7 42 88-131 17-63 (210)
139 2x8a_A Nuclear valosin-contain 98.8 1.1E-08 3.7E-13 91.3 7.8 65 70-138 15-81 (274)
140 3tr0_A Guanylate kinase, GMP k 98.8 3.8E-09 1.3E-13 89.2 4.4 41 93-137 1-41 (205)
141 2e87_A Hypothetical protein PH 98.8 4.9E-08 1.7E-12 90.2 12.2 236 8-287 45-327 (357)
142 2r6a_A DNAB helicase, replicat 98.8 8.9E-08 3.1E-12 91.3 13.9 125 91-219 195-362 (454)
143 1p9r_A General secretion pathw 98.8 1.3E-08 4.5E-13 96.0 8.0 83 97-194 165-249 (418)
144 1zp6_A Hypothetical protein AT 98.7 6.3E-09 2.2E-13 86.9 4.8 40 95-136 5-44 (191)
145 3c8u_A Fructokinase; YP_612366 98.7 1E-08 3.4E-13 87.4 5.6 41 96-136 19-62 (208)
146 3hr8_A Protein RECA; alpha and 98.7 1.3E-07 4.5E-12 87.3 13.2 118 96-219 58-196 (356)
147 2www_A Methylmalonic aciduria 98.7 2.8E-08 9.6E-13 91.7 7.4 44 97-140 72-115 (349)
148 3p32_A Probable GTPase RV1496/ 98.7 1.7E-07 5.9E-12 86.5 12.6 95 98-192 78-182 (355)
149 1rz3_A Hypothetical protein rb 98.6 5.8E-08 2E-12 82.3 7.6 44 96-139 19-62 (201)
150 3asz_A Uridine kinase; cytidin 98.6 3.4E-08 1.2E-12 83.9 5.3 39 96-137 3-41 (211)
151 1lvg_A Guanylate kinase, GMP k 98.6 1.7E-08 5.7E-13 85.6 3.3 28 97-124 2-29 (198)
152 3a00_A Guanylate kinase, GMP k 98.6 2E-08 6.7E-13 84.1 3.3 26 99-124 1-26 (186)
153 1u0l_A Probable GTPase ENGC; p 98.6 1.2E-08 4E-13 92.3 2.1 44 95-138 165-211 (301)
154 1qhl_A Protein (cell division 98.6 1.6E-09 5.3E-14 94.2 -4.1 45 93-138 22-66 (227)
155 1nij_A Hypothetical protein YJ 98.5 2.1E-07 7.3E-12 84.6 9.2 39 100-138 5-51 (318)
156 2qag_C Septin-7; cell cycle, c 98.5 1E-08 3.5E-13 96.8 -0.1 34 87-126 25-58 (418)
157 4eun_A Thermoresistant glucoki 98.5 1.3E-07 4.4E-12 79.9 6.5 41 95-139 25-65 (200)
158 1iy2_A ATP-dependent metallopr 98.5 1.3E-07 4.5E-12 84.0 6.3 45 88-136 64-108 (278)
159 1ixz_A ATP-dependent metallopr 98.5 1.7E-07 5.8E-12 82.0 6.9 45 88-136 40-84 (254)
160 1t9h_A YLOQ, probable GTPase E 98.5 1.8E-08 6E-13 91.4 0.3 39 94-132 168-206 (307)
161 1udx_A The GTP-binding protein 98.5 8.8E-08 3E-12 90.3 5.0 33 90-122 148-180 (416)
162 2yv5_A YJEQ protein; hydrolase 98.5 4.6E-08 1.6E-12 88.4 3.0 42 96-138 162-206 (302)
163 2bdt_A BH3686; alpha-beta prot 98.5 8.1E-08 2.8E-12 80.2 4.2 35 99-136 2-36 (189)
164 3uie_A Adenylyl-sulfate kinase 98.5 6.1E-08 2.1E-12 82.0 3.3 44 93-137 19-64 (200)
165 1v5w_A DMC1, meiotic recombina 98.5 9E-07 3.1E-11 81.3 11.2 174 41-220 63-273 (343)
166 3kta_A Chromosome segregation 98.5 1.1E-07 3.8E-12 78.8 4.6 39 90-129 18-56 (182)
167 1oix_A RAS-related protein RAB 98.4 1.3E-07 4.4E-12 79.2 4.2 26 100-125 30-55 (191)
168 2j41_A Guanylate kinase; GMP, 98.4 8.2E-08 2.8E-12 80.9 3.0 34 95-128 2-35 (207)
169 1kgd_A CASK, peripheral plasma 98.4 1.1E-07 3.6E-12 79.2 3.3 36 98-133 4-40 (180)
170 2f1r_A Molybdopterin-guanine d 98.4 5.7E-08 1.9E-12 80.6 1.3 39 100-138 3-44 (171)
171 2vp4_A Deoxynucleoside kinase; 98.4 1.5E-07 5.1E-12 81.4 4.1 41 93-137 14-54 (230)
172 3vaa_A Shikimate kinase, SK; s 98.4 1.5E-07 5.2E-12 79.4 3.9 37 87-123 13-49 (199)
173 4dzz_A Plasmid partitioning pr 98.4 9.6E-07 3.3E-11 74.2 8.8 152 100-275 2-162 (206)
174 3tqc_A Pantothenate kinase; bi 98.4 1.7E-07 5.9E-12 85.4 4.3 42 98-139 91-134 (321)
175 2z43_A DNA repair and recombin 98.4 7.8E-07 2.7E-11 81.0 8.7 174 39-219 46-256 (324)
176 2ce7_A Cell division protein F 98.4 1.7E-06 5.7E-11 82.9 11.3 95 71-191 22-118 (476)
177 2rcn_A Probable GTPase ENGC; Y 98.3 1.7E-07 5.7E-12 86.6 3.3 36 98-133 214-250 (358)
178 1u94_A RECA protein, recombina 98.3 2.9E-06 9.8E-11 78.4 11.2 117 96-219 60-198 (356)
179 1fnn_A CDC6P, cell division co 98.3 5.5E-06 1.9E-10 76.2 12.7 120 98-221 41-169 (389)
180 1knq_A Gluconate kinase; ALFA/ 98.3 7.2E-07 2.5E-11 73.3 5.4 39 97-139 6-44 (175)
181 4e22_A Cytidylate kinase; P-lo 98.3 1.1E-07 3.6E-12 83.7 0.1 42 97-138 25-77 (252)
182 3t34_A Dynamin-related protein 98.3 2.7E-07 9.3E-12 85.2 2.5 40 88-130 26-67 (360)
183 3tau_A Guanylate kinase, GMP k 98.3 3.5E-07 1.2E-11 77.8 3.0 29 97-125 6-34 (208)
184 2qby_A CDC6 homolog 1, cell di 98.2 1.5E-06 5E-11 79.8 7.1 121 97-222 43-174 (386)
185 2f9l_A RAB11B, member RAS onco 98.2 9.3E-07 3.2E-11 74.1 5.3 23 101-123 7-29 (199)
186 1svm_A Large T antigen; AAA+ f 98.2 5.4E-07 1.9E-11 83.8 3.9 44 86-132 156-199 (377)
187 3cr8_A Sulfate adenylyltranfer 98.2 6E-07 2.1E-11 87.5 3.9 42 95-136 365-407 (552)
188 2dhr_A FTSH; AAA+ protein, hex 98.2 3.3E-06 1.1E-10 81.3 8.7 47 87-137 54-100 (499)
189 3ney_A 55 kDa erythrocyte memb 98.2 8.3E-07 2.8E-11 75.2 3.9 31 94-124 14-44 (197)
190 2r8r_A Sensor protein; KDPD, P 98.2 6.9E-06 2.4E-10 70.8 9.7 44 98-141 4-48 (228)
191 4a1f_A DNAB helicase, replicat 98.2 1.4E-05 4.8E-10 73.2 12.1 120 95-218 42-163 (338)
192 3m6a_A ATP-dependent protease 98.2 5.3E-07 1.8E-11 87.9 2.4 45 89-134 99-143 (543)
193 1hyq_A MIND, cell division inh 98.1 3.4E-05 1.2E-09 67.4 13.6 40 99-138 2-42 (263)
194 3nwj_A ATSK2; P loop, shikimat 98.1 3.2E-07 1.1E-11 80.7 0.1 38 87-124 33-73 (250)
195 3end_A Light-independent proto 98.1 3.9E-05 1.3E-09 68.8 13.9 43 97-139 39-81 (307)
196 3bh0_A DNAB-like replicative h 98.1 1.8E-05 6.1E-10 71.7 11.5 43 95-137 64-106 (315)
197 2i1q_A DNA repair and recombin 98.1 4.7E-06 1.6E-10 75.6 7.4 170 42-219 40-257 (322)
198 2yvu_A Probable adenylyl-sulfa 98.1 2.6E-06 8.9E-11 70.8 5.3 41 96-136 10-50 (186)
199 3bos_A Putative DNA replicatio 98.1 2.9E-06 1E-10 72.5 5.6 38 98-135 51-88 (242)
200 2w58_A DNAI, primosome compone 98.1 2.8E-06 9.4E-11 71.4 5.1 36 100-135 55-90 (202)
201 2dy1_A Elongation factor G; tr 98.1 1E-05 3.6E-10 80.6 10.0 44 93-137 3-48 (665)
202 2o5v_A DNA replication and rep 98.1 2.1E-06 7.2E-11 79.4 4.2 33 88-121 16-48 (359)
203 2q6t_A DNAB replication FORK h 98.1 3.8E-05 1.3E-09 72.9 13.1 42 96-137 197-239 (444)
204 2z4s_A Chromosomal replication 98.1 3.7E-06 1.3E-10 79.8 5.9 100 99-220 130-236 (440)
205 4eaq_A DTMP kinase, thymidylat 98.1 8.3E-06 2.8E-10 70.5 7.5 46 89-135 13-61 (229)
206 1in4_A RUVB, holliday junction 98.1 1.4E-07 4.8E-12 86.3 -4.0 33 99-131 51-87 (334)
207 1lv7_A FTSH; alpha/beta domain 98.0 2.1E-05 7.2E-10 68.6 10.2 95 71-190 18-113 (257)
208 2b8t_A Thymidine kinase; deoxy 98.0 9.9E-06 3.4E-10 69.9 7.8 116 97-223 10-128 (223)
209 3llm_A ATP-dependent RNA helic 98.0 3.7E-05 1.3E-09 66.3 11.5 126 97-233 74-222 (235)
210 1xp8_A RECA protein, recombina 98.0 2.3E-05 7.9E-10 72.5 10.6 42 96-137 71-112 (366)
211 3cio_A ETK, tyrosine-protein k 98.0 5.3E-05 1.8E-09 68.1 12.6 148 97-259 102-281 (299)
212 3ea0_A ATPase, para family; al 98.0 3.5E-05 1.2E-09 66.3 11.0 41 98-138 3-45 (245)
213 4fcw_A Chaperone protein CLPB; 98.0 8.3E-06 2.8E-10 73.0 7.2 40 98-137 46-85 (311)
214 2ius_A DNA translocase FTSK; n 98.0 7.7E-06 2.6E-10 78.8 7.2 49 91-139 159-209 (512)
215 3bfv_A CAPA1, CAPB2, membrane 98.0 4.5E-05 1.5E-09 67.6 11.7 44 97-140 80-124 (271)
216 1kag_A SKI, shikimate kinase I 98.0 2.5E-06 8.6E-11 69.7 3.3 27 98-124 3-29 (173)
217 1l8q_A Chromosomal replication 98.0 6.2E-06 2.1E-10 74.6 6.0 38 98-135 36-73 (324)
218 2zts_A Putative uncharacterize 98.0 2.5E-05 8.5E-10 67.3 9.6 125 96-220 27-181 (251)
219 3k9g_A PF-32 protein; ssgcid, 98.0 7.1E-05 2.4E-09 65.6 12.5 43 96-139 24-67 (267)
220 1cp2_A CP2, nitrogenase iron p 98.0 8.7E-05 3E-09 65.0 12.9 40 100-139 2-41 (269)
221 2pez_A Bifunctional 3'-phospho 98.0 6.6E-06 2.2E-10 67.8 5.0 38 97-134 3-41 (179)
222 1f2t_B RAD50 ABC-ATPase; DNA d 98.0 3.5E-06 1.2E-10 68.1 3.2 48 174-222 74-124 (148)
223 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 3.4E-06 1.2E-10 78.8 3.5 40 95-134 16-67 (392)
224 2qt1_A Nicotinamide riboside k 98.0 5.7E-06 2E-10 69.8 4.7 40 94-137 16-55 (207)
225 1w1w_A Structural maintenance 97.9 5E-06 1.7E-10 78.5 4.2 34 94-127 21-54 (430)
226 1m7g_A Adenylylsulfate kinase; 97.9 5.2E-06 1.8E-10 70.5 3.8 39 95-133 21-61 (211)
227 3la6_A Tyrosine-protein kinase 97.9 0.00011 3.8E-09 65.6 12.5 148 97-259 90-269 (286)
228 1g3q_A MIND ATPase, cell divis 97.9 8.3E-05 2.8E-09 63.7 11.3 40 99-138 2-42 (237)
229 2xau_A PRE-mRNA-splicing facto 97.9 5.3E-06 1.8E-10 84.1 4.0 110 97-208 107-236 (773)
230 3cf0_A Transitional endoplasmi 97.9 1.9E-05 6.6E-10 70.9 7.3 75 94-191 44-118 (301)
231 3k53_A Ferrous iron transport 97.9 8.8E-06 3E-10 71.9 4.8 24 100-123 4-27 (271)
232 2oze_A ORF delta'; para, walke 97.9 2.9E-05 9.9E-10 69.2 8.1 42 99-140 34-78 (298)
233 1ypw_A Transitional endoplasmi 97.9 1.1E-05 3.6E-10 82.3 5.7 94 72-190 211-306 (806)
234 3lxx_A GTPase IMAP family memb 97.9 6.3E-05 2.2E-09 64.8 9.9 27 100-126 30-56 (239)
235 2ph1_A Nucleotide-binding prot 97.9 0.00034 1.2E-08 61.2 14.8 43 99-141 18-61 (262)
236 2wsm_A Hydrogenase expression/ 97.9 2.6E-05 9.1E-10 66.1 7.4 152 100-279 31-195 (221)
237 1odf_A YGR205W, hypothetical 3 97.9 1.5E-05 5.3E-10 71.4 5.9 42 97-138 29-73 (290)
238 3h4m_A Proteasome-activating n 97.9 6.2E-05 2.1E-09 66.5 9.7 71 97-191 49-120 (285)
239 1xx6_A Thymidine kinase; NESG, 97.8 3.2E-05 1.1E-09 65.1 7.1 111 97-223 6-120 (191)
240 1cke_A CK, MSSA, protein (cyti 97.8 3.5E-06 1.2E-10 72.0 1.2 34 99-132 5-41 (227)
241 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 1.3E-05 4.3E-10 64.7 4.1 32 91-123 16-47 (149)
242 3b9p_A CG5977-PA, isoform A; A 97.8 5.2E-05 1.8E-09 67.4 8.5 70 98-191 53-123 (297)
243 3kjh_A CO dehydrogenase/acetyl 97.8 0.00013 4.5E-09 62.7 10.5 37 102-138 3-39 (254)
244 3cwq_A Para family chromosome 97.8 0.00049 1.7E-08 58.2 13.9 144 101-275 2-153 (209)
245 2ged_A SR-beta, signal recogni 97.8 9.3E-05 3.2E-09 61.0 9.1 24 99-122 48-71 (193)
246 2p5t_B PEZT; postsegregational 97.8 2.4E-05 8.1E-10 68.5 5.6 62 69-138 7-68 (253)
247 1q57_A DNA primase/helicase; d 97.8 0.00023 8E-09 68.4 12.8 42 96-137 239-281 (503)
248 2qgz_A Helicase loader, putati 97.8 6.1E-05 2.1E-09 68.0 8.1 37 99-135 152-189 (308)
249 2qz4_A Paraplegin; AAA+, SPG7, 97.8 0.00024 8.4E-09 61.5 11.7 72 97-191 37-108 (262)
250 1np6_A Molybdopterin-guanine d 97.7 2.8E-05 9.5E-10 64.4 5.1 37 100-136 7-43 (174)
251 2v1u_A Cell division control p 97.7 0.0001 3.5E-09 67.4 9.4 29 97-125 42-70 (387)
252 1byi_A Dethiobiotin synthase; 97.7 0.0016 5.5E-08 55.1 16.2 35 100-134 2-37 (224)
253 3bgw_A DNAB-like replicative h 97.7 0.00057 2E-08 64.8 14.6 43 96-138 194-236 (444)
254 1xjc_A MOBB protein homolog; s 97.7 3.5E-05 1.2E-09 63.6 5.3 38 100-137 5-42 (169)
255 3k1j_A LON protease, ATP-depen 97.7 6.8E-06 2.3E-10 81.1 1.2 47 90-136 51-98 (604)
256 1gvn_B Zeta; postsegregational 97.7 8.7E-05 3E-09 66.3 8.2 62 69-138 8-69 (287)
257 3io5_A Recombination and repai 97.7 9.6E-05 3.3E-09 66.9 8.3 40 96-136 26-67 (333)
258 2xj4_A MIPZ; replication, cell 97.7 0.00086 2.9E-08 59.5 14.2 40 99-138 4-44 (286)
259 3t61_A Gluconokinase; PSI-biol 97.7 4.6E-05 1.6E-09 63.9 5.6 36 99-138 18-53 (202)
260 3a1s_A Iron(II) transport prot 97.7 4.1E-05 1.4E-09 67.3 5.4 22 101-122 7-28 (258)
261 1y63_A LMAJ004144AAA protein; 97.7 2.5E-05 8.4E-10 64.8 3.7 32 91-122 2-33 (184)
262 3iev_A GTP-binding protein ERA 97.7 0.00031 1.1E-08 63.3 11.0 25 98-122 9-33 (308)
263 3t5d_A Septin-7; GTP-binding p 97.6 0.00011 3.8E-09 64.9 7.7 21 101-121 10-30 (274)
264 3fkq_A NTRC-like two-domain pr 97.6 0.00069 2.3E-08 62.6 13.3 68 68-136 113-181 (373)
265 2vhj_A Ntpase P4, P4; non- hyd 97.6 0.0001 3.4E-09 66.9 7.2 37 96-135 120-156 (331)
266 1jwy_B Dynamin A GTPase domain 97.6 0.00011 3.7E-09 65.9 7.5 23 101-123 26-48 (315)
267 3d8b_A Fidgetin-like protein 1 97.6 0.00028 9.5E-09 64.8 10.3 94 70-190 89-185 (357)
268 2qor_A Guanylate kinase; phosp 97.6 2.7E-05 9.1E-10 65.7 3.1 29 96-124 9-37 (204)
269 1jjv_A Dephospho-COA kinase; P 97.6 3.1E-05 1E-09 65.2 3.4 30 100-134 3-32 (206)
270 3qks_A DNA double-strand break 97.6 4.7E-05 1.6E-09 64.4 4.1 33 91-124 16-48 (203)
271 1sxj_C Activator 1 40 kDa subu 97.6 9.4E-06 3.2E-10 74.0 -0.4 31 102-132 49-79 (340)
272 3cmw_A Protein RECA, recombina 97.6 0.00066 2.2E-08 73.6 13.7 116 96-220 729-868 (1706)
273 2ga8_A Hypothetical 39.9 kDa p 97.5 2.4E-05 8.2E-10 71.9 2.2 34 91-124 14-49 (359)
274 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.00051 1.8E-08 62.2 11.0 96 70-191 17-115 (322)
275 1ypw_A Transitional endoplasmi 97.5 1.3E-05 4.5E-10 81.6 0.3 33 92-124 504-536 (806)
276 2if2_A Dephospho-COA kinase; a 97.5 4.4E-05 1.5E-09 64.0 3.4 21 101-121 3-23 (204)
277 3q9l_A Septum site-determining 97.5 0.0005 1.7E-08 59.6 10.1 40 99-138 2-42 (260)
278 2hf9_A Probable hydrogenase ni 97.5 0.00019 6.5E-09 60.9 7.2 39 99-138 38-76 (226)
279 3i8s_A Ferrous iron transport 97.5 7.4E-05 2.5E-09 66.2 4.5 23 100-122 4-26 (274)
280 3t15_A Ribulose bisphosphate c 97.5 0.00022 7.7E-09 63.7 7.7 27 97-123 34-60 (293)
281 3cm0_A Adenylate kinase; ATP-b 97.5 6.5E-05 2.2E-09 61.9 3.7 26 98-123 3-28 (186)
282 3ug7_A Arsenical pump-driving 97.5 0.0048 1.6E-07 56.4 16.6 39 100-138 27-65 (349)
283 2p65_A Hypothetical protein PF 97.5 3.7E-05 1.3E-09 62.7 1.9 27 99-125 43-69 (187)
284 4b4t_K 26S protease regulatory 97.4 0.00016 5.5E-09 68.2 6.3 95 71-190 178-274 (428)
285 1gtv_A TMK, thymidylate kinase 97.4 3.8E-05 1.3E-09 64.7 1.6 33 101-133 2-34 (214)
286 4dhe_A Probable GTP-binding pr 97.4 0.00057 1.9E-08 57.6 9.0 23 100-122 30-52 (223)
287 3syl_A Protein CBBX; photosynt 97.4 0.00084 2.9E-08 59.7 10.5 28 98-125 66-93 (309)
288 1wcv_1 SOJ, segregation protei 97.4 0.00017 5.7E-09 63.0 5.8 42 98-139 5-47 (257)
289 3ice_A Transcription terminati 97.4 7.6E-05 2.6E-09 69.3 3.4 46 91-136 166-213 (422)
290 2qby_B CDC6 homolog 3, cell di 97.4 0.0007 2.4E-08 62.0 9.8 28 98-125 44-71 (384)
291 4ag6_A VIRB4 ATPase, type IV s 97.4 0.00014 4.8E-09 67.6 5.1 39 98-136 34-72 (392)
292 4b4t_L 26S protease subunit RP 97.4 0.00028 9.7E-09 66.6 7.2 95 71-190 187-283 (437)
293 3n70_A Transport activator; si 97.4 0.00056 1.9E-08 54.3 7.9 36 99-134 24-59 (145)
294 4b4t_M 26S protease regulatory 97.4 0.00023 7.8E-09 67.2 6.4 95 71-190 187-283 (434)
295 2gj8_A MNME, tRNA modification 97.4 0.00011 3.7E-09 59.9 3.7 26 97-122 2-27 (172)
296 1m2o_B GTP-binding protein SAR 97.3 0.00011 3.8E-09 60.9 3.5 35 86-121 11-45 (190)
297 3kb2_A SPBC2 prophage-derived 97.3 0.00012 4.1E-09 59.2 3.6 24 101-124 3-26 (173)
298 3cmw_A Protein RECA, recombina 97.3 0.0014 4.6E-08 71.2 12.6 118 96-221 380-520 (1706)
299 3eie_A Vacuolar protein sortin 97.3 0.00054 1.8E-08 61.9 8.2 72 97-191 49-120 (322)
300 2rhm_A Putative kinase; P-loop 97.3 0.00016 5.6E-09 59.6 4.3 27 97-123 3-29 (193)
301 4b4t_J 26S protease regulatory 97.3 0.00025 8.6E-09 66.2 5.9 95 71-190 154-250 (405)
302 1q3t_A Cytidylate kinase; nucl 97.3 0.00015 5.1E-09 62.5 4.0 27 97-123 14-40 (236)
303 1ega_A Protein (GTP-binding pr 97.3 9.9E-05 3.4E-09 66.3 3.0 26 97-122 6-31 (301)
304 1d2n_A N-ethylmaleimide-sensit 97.3 0.00074 2.5E-08 59.2 8.5 27 97-123 62-88 (272)
305 2plr_A DTMP kinase, probable t 97.3 0.00027 9.3E-09 59.1 5.5 35 98-133 3-37 (213)
306 3pih_A Uvrabc system protein A 97.3 0.00015 5E-09 74.5 4.4 60 166-226 467-531 (916)
307 1yrb_A ATP(GTP)binding protein 97.3 0.00032 1.1E-08 60.9 6.0 41 97-138 12-52 (262)
308 1qhx_A CPT, protein (chloramph 97.3 0.00016 5.3E-09 59.1 3.7 26 99-124 3-28 (178)
309 1kht_A Adenylate kinase; phosp 97.3 0.00017 5.7E-09 59.4 3.9 28 99-126 3-30 (192)
310 3cmu_A Protein RECA, recombina 97.3 0.0011 3.7E-08 72.9 11.0 91 96-191 1424-1515(2050)
311 1njg_A DNA polymerase III subu 97.3 0.00036 1.2E-08 58.8 5.8 27 100-126 46-72 (250)
312 4b4t_I 26S protease regulatory 97.2 0.0005 1.7E-08 64.6 7.2 95 71-190 188-284 (437)
313 2r62_A Cell division protease 97.2 9.1E-05 3.1E-09 64.8 2.0 23 102-124 47-69 (268)
314 2wji_A Ferrous iron transport 97.2 0.00015 5.3E-09 58.4 3.2 24 100-123 4-27 (165)
315 4b4t_H 26S protease regulatory 97.2 0.00041 1.4E-08 65.8 6.4 95 71-190 215-311 (467)
316 3uk6_A RUVB-like 2; hexameric 97.2 0.00051 1.7E-08 62.7 7.0 39 98-136 69-107 (368)
317 4dcu_A GTP-binding protein ENG 97.2 0.00039 1.3E-08 66.0 6.3 21 101-121 25-45 (456)
318 3fwy_A Light-independent proto 97.2 0.00037 1.3E-08 63.1 5.8 45 94-138 43-87 (314)
319 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00032 1.1E-08 61.4 5.3 39 98-136 3-41 (260)
320 2ze6_A Isopentenyl transferase 97.2 0.00021 7.1E-09 62.5 3.8 24 100-123 2-25 (253)
321 1f6b_A SAR1; gtpases, N-termin 97.2 7E-05 2.4E-09 62.6 0.6 33 88-121 15-47 (198)
322 2qp9_X Vacuolar protein sortin 97.2 0.00055 1.9E-08 62.8 6.6 99 67-191 53-153 (355)
323 1nks_A Adenylate kinase; therm 97.2 0.00032 1.1E-08 57.7 4.6 33 101-133 3-35 (194)
324 1ly1_A Polynucleotide kinase; 97.2 0.00024 8.3E-09 57.8 3.7 23 99-121 2-24 (181)
325 3cmu_A Protein RECA, recombina 97.2 0.0029 1E-07 69.5 13.0 116 96-220 380-519 (2050)
326 2qtf_A Protein HFLX, GTP-bindi 97.1 0.00025 8.7E-09 65.5 4.1 24 101-124 181-204 (364)
327 3hu3_A Transitional endoplasmi 97.1 0.00032 1.1E-08 67.3 4.9 71 97-190 236-306 (489)
328 2jaq_A Deoxyguanosine kinase; 97.1 0.00025 8.6E-09 58.9 3.7 24 101-124 2-25 (205)
329 3trf_A Shikimate kinase, SK; a 97.1 0.00027 9.4E-09 58.0 3.8 25 99-123 5-29 (185)
330 3iij_A Coilin-interacting nucl 97.1 0.00024 8.3E-09 58.2 3.4 27 97-123 9-35 (180)
331 1tev_A UMP-CMP kinase; ploop, 97.1 0.00031 1E-08 57.9 4.0 26 98-123 2-27 (196)
332 2c95_A Adenylate kinase 1; tra 97.1 0.00029 1E-08 58.2 3.9 27 97-123 7-33 (196)
333 1nn5_A Similar to deoxythymidy 97.1 0.00051 1.7E-08 57.6 5.3 35 97-131 7-41 (215)
334 1via_A Shikimate kinase; struc 97.1 0.00024 8.1E-09 58.1 3.1 23 101-123 6-28 (175)
335 3r20_A Cytidylate kinase; stru 97.1 0.00028 9.6E-09 61.1 3.6 26 98-123 8-33 (233)
336 2wjg_A FEOB, ferrous iron tran 97.1 0.00027 9.1E-09 57.8 3.4 23 100-122 8-30 (188)
337 1vht_A Dephospho-COA kinase; s 97.1 0.00034 1.2E-08 59.2 4.1 24 98-121 3-26 (218)
338 3zq6_A Putative arsenical pump 97.1 0.0018 6.2E-08 58.6 9.1 42 97-138 10-53 (324)
339 1mky_A Probable GTP-binding pr 97.1 0.00024 8.2E-09 67.2 3.4 37 99-135 180-228 (439)
340 2j9r_A Thymidine kinase; TK1, 97.1 0.0012 4.1E-08 56.3 7.4 114 96-223 25-140 (214)
341 3ez2_A Plasmid partition prote 97.1 0.001 3.6E-08 61.8 7.6 43 97-139 106-155 (398)
342 3lw7_A Adenylate kinase relate 97.1 0.00028 9.4E-09 56.9 3.2 19 101-119 3-21 (179)
343 2wwf_A Thymidilate kinase, put 97.1 0.0011 3.7E-08 55.5 7.0 34 97-130 8-41 (212)
344 1uf9_A TT1252 protein; P-loop, 97.1 0.00035 1.2E-08 58.1 3.9 32 98-134 7-38 (203)
345 3e2i_A Thymidine kinase; Zn-bi 97.1 0.00077 2.6E-08 57.5 5.9 110 97-223 26-140 (219)
346 2zej_A Dardarin, leucine-rich 97.1 0.00022 7.4E-09 58.6 2.4 23 101-123 4-26 (184)
347 2v54_A DTMP kinase, thymidylat 97.1 0.00034 1.1E-08 58.3 3.6 26 98-123 3-28 (204)
348 2z0h_A DTMP kinase, thymidylat 97.1 0.00055 1.9E-08 56.6 4.9 33 101-133 2-34 (197)
349 2bwj_A Adenylate kinase 5; pho 97.0 0.00018 6.2E-09 59.7 1.8 27 97-123 10-36 (199)
350 2orw_A Thymidine kinase; TMTK, 97.0 0.00073 2.5E-08 56.2 5.4 36 98-133 2-37 (184)
351 2h5e_A Peptide chain release f 97.0 0.001 3.6E-08 64.4 7.2 25 98-122 12-36 (529)
352 1a7j_A Phosphoribulokinase; tr 97.0 0.00026 8.8E-09 63.3 2.7 41 98-138 4-44 (290)
353 3zvl_A Bifunctional polynucleo 97.0 0.0036 1.2E-07 58.7 10.6 27 97-123 256-282 (416)
354 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00025 8.5E-09 66.1 2.6 27 96-122 19-45 (396)
355 1sxj_D Activator 1 41 kDa subu 97.0 0.001 3.5E-08 60.1 6.6 23 102-124 61-83 (353)
356 3iqw_A Tail-anchored protein t 97.0 0.0045 1.5E-07 56.4 10.8 40 99-138 16-55 (334)
357 3auy_A DNA double-strand break 97.0 0.00028 9.6E-09 65.2 2.8 31 89-120 16-46 (371)
358 2c9o_A RUVB-like 1; hexameric 97.0 0.00065 2.2E-08 64.5 5.3 71 98-190 62-135 (456)
359 1ex7_A Guanylate kinase; subst 97.0 0.00038 1.3E-08 58.1 3.2 22 102-123 4-25 (186)
360 3of5_A Dethiobiotin synthetase 97.0 0.0073 2.5E-07 51.8 11.4 165 100-276 5-203 (228)
361 4edh_A DTMP kinase, thymidylat 97.0 0.001 3.4E-08 56.7 5.7 38 98-135 5-42 (213)
362 2vli_A Antibiotic resistance p 97.0 0.0003 1E-08 57.6 2.3 27 98-124 4-30 (183)
363 1aky_A Adenylate kinase; ATP:A 96.9 0.00054 1.9E-08 58.1 3.9 26 98-123 3-28 (220)
364 2zan_A Vacuolar protein sortin 96.9 0.0021 7.2E-08 60.8 8.3 27 97-123 165-191 (444)
365 2chg_A Replication factor C sm 96.9 0.0012 4.2E-08 54.8 6.0 23 102-124 41-63 (226)
366 3lv8_A DTMP kinase, thymidylat 96.9 0.0014 4.7E-08 56.8 6.4 36 98-133 26-62 (236)
367 3umf_A Adenylate kinase; rossm 96.9 0.00069 2.4E-08 58.0 4.4 41 94-138 24-64 (217)
368 1qf9_A UMP/CMP kinase, protein 96.9 0.0007 2.4E-08 55.6 4.3 26 98-123 5-30 (194)
369 4tmk_A Protein (thymidylate ki 96.9 0.0016 5.6E-08 55.4 6.7 36 98-133 2-38 (213)
370 3cf2_A TER ATPase, transitiona 96.9 0.0015 5E-08 66.3 7.4 93 72-190 211-306 (806)
371 3vfd_A Spastin; ATPase, microt 96.9 0.0018 6.1E-08 60.0 7.5 71 98-191 147-217 (389)
372 1qvr_A CLPB protein; coiled co 96.9 0.0024 8.3E-08 65.3 9.1 37 100-136 589-625 (854)
373 1ukz_A Uridylate kinase; trans 96.9 0.00068 2.3E-08 56.6 4.1 28 96-123 12-39 (203)
374 2bjv_A PSP operon transcriptio 96.9 0.0043 1.5E-07 54.0 9.4 36 100-135 30-65 (265)
375 2pbr_A DTMP kinase, thymidylat 96.9 0.00087 3E-08 55.1 4.7 31 101-131 2-32 (195)
376 1w5s_A Origin recognition comp 96.9 0.0022 7.4E-08 59.2 7.8 28 98-125 49-78 (412)
377 2cdn_A Adenylate kinase; phosp 96.9 0.00068 2.3E-08 56.6 3.9 27 97-123 18-44 (201)
378 1uj2_A Uridine-cytidine kinase 96.9 0.00097 3.3E-08 57.9 5.1 28 97-124 20-47 (252)
379 1zd8_A GTP:AMP phosphotransfer 96.9 0.00058 2E-08 58.3 3.5 27 97-123 5-31 (227)
380 3pg5_A Uncharacterized protein 96.9 0.0017 5.8E-08 59.7 6.9 40 100-139 2-42 (361)
381 2c78_A Elongation factor TU-A; 96.9 0.0049 1.7E-07 57.4 10.1 26 100-125 12-37 (405)
382 1zak_A Adenylate kinase; ATP:A 96.8 0.00057 1.9E-08 58.1 3.3 27 98-124 4-30 (222)
383 3ake_A Cytidylate kinase; CMP 96.8 0.00067 2.3E-08 56.6 3.7 24 101-124 4-27 (208)
384 2hjg_A GTP-binding protein ENG 96.8 0.0015 5.3E-08 61.5 6.6 21 101-121 5-25 (436)
385 2woo_A ATPase GET3; tail-ancho 96.8 0.0065 2.2E-07 55.0 10.5 39 100-138 20-58 (329)
386 2r6f_A Excinuclease ABC subuni 96.8 0.0011 3.7E-08 68.1 5.8 57 167-224 508-569 (972)
387 3te6_A Regulatory protein SIR3 96.8 0.0059 2E-07 55.2 10.0 29 97-125 43-71 (318)
388 2orv_A Thymidine kinase; TP4A 96.8 0.0057 2E-07 52.7 9.3 109 96-223 16-128 (234)
389 1w4r_A Thymidine kinase; type 96.8 0.0017 5.6E-08 54.6 5.8 109 97-223 18-129 (195)
390 1jbk_A CLPB protein; beta barr 96.8 0.0016 5.3E-08 52.8 5.6 28 98-125 42-69 (195)
391 3pfi_A Holliday junction ATP-d 96.8 0.0039 1.3E-07 56.2 8.7 24 100-123 56-79 (338)
392 4dcu_A GTP-binding protein ENG 96.8 0.014 4.6E-07 55.3 12.8 26 97-122 193-218 (456)
393 2ygr_A Uvrabc system protein A 96.8 0.00093 3.2E-08 68.8 4.9 58 166-224 524-586 (993)
394 3d3q_A TRNA delta(2)-isopenten 96.8 0.0012 4E-08 60.3 5.0 25 100-124 8-32 (340)
395 3u61_B DNA polymerase accessor 96.8 0.0079 2.7E-07 53.8 10.5 25 99-123 48-72 (324)
396 1sxj_A Activator 1 95 kDa subu 96.8 0.0033 1.1E-07 60.5 8.3 25 99-123 77-101 (516)
397 1zun_B Sulfate adenylate trans 96.7 0.019 6.5E-07 54.0 13.3 24 100-123 25-48 (434)
398 2vf7_A UVRA2, excinuclease ABC 96.7 0.00098 3.4E-08 67.9 4.6 57 167-224 383-444 (842)
399 1g5t_A COB(I)alamin adenosyltr 96.7 0.0035 1.2E-07 52.7 7.3 38 97-135 27-64 (196)
400 3pvs_A Replication-associated 96.7 0.0016 5.4E-08 61.8 5.7 24 101-124 52-75 (447)
401 3v9p_A DTMP kinase, thymidylat 96.7 0.00096 3.3E-08 57.5 3.8 37 97-133 23-63 (227)
402 1hqc_A RUVB; extended AAA-ATPa 96.7 0.0048 1.6E-07 55.1 8.6 25 99-123 38-62 (324)
403 3igf_A ALL4481 protein; two-do 96.7 0.0041 1.4E-07 57.5 8.3 36 100-135 3-38 (374)
404 3ld9_A DTMP kinase, thymidylat 96.7 0.0018 6.1E-08 55.6 5.4 36 97-132 19-55 (223)
405 2iyv_A Shikimate kinase, SK; t 96.7 0.00078 2.7E-08 55.3 2.9 24 100-123 3-26 (184)
406 2axn_A 6-phosphofructo-2-kinas 96.7 0.01 3.5E-07 57.2 11.2 40 97-136 33-72 (520)
407 1e6c_A Shikimate kinase; phosp 96.7 0.00085 2.9E-08 54.3 3.1 24 100-123 3-26 (173)
408 3pxi_A Negative regulator of g 96.7 0.0031 1.1E-07 63.6 7.8 34 100-133 522-555 (758)
409 3tlx_A Adenylate kinase 2; str 96.7 0.0013 4.3E-08 57.0 4.3 27 97-123 27-53 (243)
410 3fb4_A Adenylate kinase; psych 96.7 0.001 3.6E-08 56.0 3.7 23 101-123 2-24 (216)
411 3p26_A Elongation factor 1 alp 96.7 0.013 4.4E-07 55.9 11.6 23 100-122 34-56 (483)
412 1c9k_A COBU, adenosylcobinamid 96.7 0.0023 7.8E-08 53.1 5.5 82 101-191 1-83 (180)
413 2pt5_A Shikimate kinase, SK; a 96.6 0.0012 4.1E-08 53.2 3.7 23 101-123 2-24 (168)
414 1zuh_A Shikimate kinase; alpha 96.6 0.0012 3.9E-08 53.4 3.6 25 100-124 8-32 (168)
415 3a8t_A Adenylate isopentenyltr 96.6 0.0012 3.9E-08 60.3 3.8 26 98-123 39-64 (339)
416 1qvr_A CLPB protein; coiled co 96.6 0.0044 1.5E-07 63.4 8.5 26 100-125 192-217 (854)
417 3dl0_A Adenylate kinase; phosp 96.6 0.0012 4E-08 55.7 3.5 23 101-123 2-24 (216)
418 3tr5_A RF-3, peptide chain rel 96.6 0.0069 2.4E-07 58.6 9.3 24 99-122 13-36 (528)
419 2xb4_A Adenylate kinase; ATP-b 96.6 0.0014 4.6E-08 55.9 3.7 23 101-123 2-24 (223)
420 3co5_A Putative two-component 96.6 0.0022 7.4E-08 50.7 4.6 24 100-123 28-51 (143)
421 3be4_A Adenylate kinase; malar 96.5 0.0013 4.6E-08 55.6 3.4 26 98-123 4-29 (217)
422 2ce2_X GTPase HRAS; signaling 96.5 0.0013 4.4E-08 51.9 3.1 22 101-122 5-26 (166)
423 1z2a_A RAS-related protein RAB 96.5 0.0013 4.5E-08 52.2 3.2 22 101-122 7-28 (168)
424 2dyk_A GTP-binding protein; GT 96.5 0.0013 4.6E-08 51.9 3.2 22 101-122 3-24 (161)
425 2qen_A Walker-type ATPase; unk 96.5 0.0059 2E-07 54.6 7.9 24 100-123 32-55 (350)
426 1ojl_A Transcriptional regulat 96.5 0.009 3.1E-07 53.4 9.0 37 99-135 25-61 (304)
427 3hjn_A DTMP kinase, thymidylat 96.5 0.0046 1.6E-07 51.8 6.5 36 101-136 2-37 (197)
428 3exa_A TRNA delta(2)-isopenten 96.5 0.0017 5.9E-08 58.6 3.9 25 99-123 3-27 (322)
429 2f6r_A COA synthase, bifunctio 96.5 0.0018 6.2E-08 57.4 3.9 25 97-121 73-97 (281)
430 1ak2_A Adenylate kinase isoenz 96.5 0.002 6.7E-08 55.2 4.0 28 97-124 14-41 (233)
431 1kao_A RAP2A; GTP-binding prot 96.5 0.0016 5.4E-08 51.5 3.2 21 101-121 5-25 (167)
432 2afh_E Nitrogenase iron protei 96.5 0.0032 1.1E-07 55.7 5.5 40 100-139 3-42 (289)
433 2lkc_A Translation initiation 96.4 0.002 6.9E-08 51.8 3.8 25 98-122 7-31 (178)
434 1u8z_A RAS-related protein RAL 96.4 0.0016 5.6E-08 51.5 3.2 22 101-122 6-27 (168)
435 2erx_A GTP-binding protein DI- 96.4 0.0016 5.5E-08 51.9 3.1 21 101-121 5-25 (172)
436 1z0j_A RAB-22, RAS-related pro 96.4 0.0016 5.6E-08 51.8 3.2 22 101-122 8-29 (170)
437 1g16_A RAS-related protein SEC 96.4 0.0016 5.6E-08 51.8 3.1 21 101-121 5-25 (170)
438 1wb1_A Translation elongation 96.4 0.013 4.6E-07 55.9 10.0 23 100-122 20-42 (482)
439 1jr3_A DNA polymerase III subu 96.4 0.0084 2.9E-07 54.4 8.3 28 99-126 38-65 (373)
440 1sky_E F1-ATPase, F1-ATP synth 96.4 0.0018 6.3E-08 61.5 3.8 38 95-132 147-184 (473)
441 3crm_A TRNA delta(2)-isopenten 96.4 0.002 6.7E-08 58.4 3.9 25 99-123 5-29 (323)
442 3tmk_A Thymidylate kinase; pho 96.4 0.0053 1.8E-07 52.3 6.4 29 97-125 3-31 (216)
443 2nzj_A GTP-binding protein REM 96.4 0.0016 5.4E-08 52.2 3.0 22 101-122 6-27 (175)
444 1e4v_A Adenylate kinase; trans 96.4 0.002 6.7E-08 54.4 3.6 23 101-123 2-24 (214)
445 3q72_A GTP-binding protein RAD 96.4 0.0013 4.5E-08 52.3 2.4 22 101-122 4-25 (166)
446 1dar_A EF-G, elongation factor 96.4 0.014 4.9E-07 58.2 10.4 24 99-122 12-35 (691)
447 1z08_A RAS-related protein RAB 96.4 0.0018 6.2E-08 51.6 3.2 22 101-122 8-29 (170)
448 1ek0_A Protein (GTP-binding pr 96.4 0.0018 6.2E-08 51.4 3.2 22 101-122 5-26 (170)
449 2qmh_A HPR kinase/phosphorylas 96.4 0.002 6.8E-08 54.3 3.5 33 90-123 26-58 (205)
450 2xex_A Elongation factor G; GT 96.4 0.011 3.9E-07 58.9 9.6 24 99-122 10-33 (693)
451 3sr0_A Adenylate kinase; phosp 96.4 0.0021 7.1E-08 54.5 3.7 35 101-139 2-36 (206)
452 3foz_A TRNA delta(2)-isopenten 96.4 0.0023 7.9E-08 57.6 4.1 26 98-123 9-34 (316)
453 1z6t_A APAF-1, apoptotic prote 96.4 0.0098 3.3E-07 57.8 9.0 25 98-122 146-170 (591)
454 1ky3_A GTP-binding protein YPT 96.4 0.0018 6.2E-08 52.1 3.2 23 100-122 9-31 (182)
455 3q85_A GTP-binding protein REM 96.4 0.0018 6E-08 51.7 3.0 22 101-122 4-25 (169)
456 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0019 6.4E-08 51.9 3.2 22 101-122 9-30 (177)
457 1svi_A GTP-binding protein YSX 96.4 0.0018 6.1E-08 53.1 3.0 24 99-122 23-46 (195)
458 1c1y_A RAS-related protein RAP 96.4 0.002 6.8E-08 51.1 3.2 21 101-121 5-25 (167)
459 3fgn_A Dethiobiotin synthetase 96.3 0.06 2E-06 46.8 12.9 162 100-275 27-218 (251)
460 2qag_A Septin-2, protein NEDD5 96.3 0.0011 3.9E-08 60.9 1.9 27 102-128 40-66 (361)
461 2fn4_A P23, RAS-related protei 96.3 0.002 6.8E-08 51.8 3.1 23 100-122 10-32 (181)
462 3kta_B Chromosome segregation 96.3 0.0029 9.9E-08 52.1 4.1 54 166-221 67-127 (173)
463 1ltq_A Polynucleotide kinase; 96.3 0.0022 7.6E-08 56.9 3.7 23 100-122 3-25 (301)
464 2grj_A Dephospho-COA kinase; T 96.3 0.0024 8.2E-08 53.4 3.7 26 98-123 11-36 (192)
465 1r2q_A RAS-related protein RAB 96.3 0.0021 7.2E-08 51.0 3.2 21 101-121 8-28 (170)
466 3pqc_A Probable GTP-binding pr 96.3 0.0019 6.6E-08 52.7 3.0 22 101-122 25-46 (195)
467 1fzq_A ADP-ribosylation factor 96.3 0.0021 7.2E-08 52.5 3.2 24 99-122 16-39 (181)
468 1ko7_A HPR kinase/phosphatase; 96.3 0.006 2E-07 55.0 6.3 52 69-121 113-166 (314)
469 2cxx_A Probable GTP-binding pr 96.3 0.0019 6.6E-08 52.5 2.9 22 101-122 3-24 (190)
470 3b1v_A Ferrous iron uptake tra 96.3 0.0021 7.1E-08 56.8 3.2 23 100-122 4-26 (272)
471 2oil_A CATX-8, RAS-related pro 96.3 0.0022 7.6E-08 52.6 3.2 22 101-122 27-48 (193)
472 3tw8_B RAS-related protein RAB 96.3 0.0018 6.1E-08 52.1 2.5 21 101-121 11-31 (181)
473 3vkw_A Replicase large subunit 96.3 0.013 4.3E-07 55.4 8.6 26 96-121 158-183 (446)
474 3con_A GTPase NRAS; structural 96.3 0.0023 7.9E-08 52.3 3.2 23 100-122 22-44 (190)
475 2h92_A Cytidylate kinase; ross 96.3 0.0022 7.4E-08 54.1 3.1 25 99-123 3-27 (219)
476 4dsu_A GTPase KRAS, isoform 2B 96.3 0.0023 7.9E-08 51.9 3.2 22 101-122 6-27 (189)
477 4hlc_A DTMP kinase, thymidylat 96.2 0.0045 1.6E-07 52.2 5.0 36 99-135 2-37 (205)
478 2ocp_A DGK, deoxyguanosine kin 96.2 0.0029 9.8E-08 54.4 3.9 27 98-124 1-27 (241)
479 2y8e_A RAB-protein 6, GH09086P 96.2 0.0023 8E-08 51.3 3.1 21 101-121 16-36 (179)
480 3bc1_A RAS-related protein RAB 96.2 0.0024 8.3E-08 51.9 3.2 22 101-122 13-34 (195)
481 1r8s_A ADP-ribosylation factor 96.2 0.0025 8.6E-08 50.5 3.2 21 102-122 3-23 (164)
482 3pxg_A Negative regulator of g 96.2 0.0054 1.8E-07 58.4 6.0 25 100-124 202-226 (468)
483 1jal_A YCHF protein; nucleotid 96.2 0.0026 8.7E-08 58.6 3.6 22 100-121 3-24 (363)
484 3clv_A RAB5 protein, putative; 96.2 0.0025 8.4E-08 52.2 3.2 23 100-122 8-30 (208)
485 1moz_A ARL1, ADP-ribosylation 96.2 0.0019 6.4E-08 52.4 2.4 23 98-120 17-39 (183)
486 1upt_A ARL1, ADP-ribosylation 96.2 0.0036 1.2E-07 49.8 4.1 23 99-121 7-29 (171)
487 2hxs_A RAB-26, RAS-related pro 96.2 0.0026 8.9E-08 51.1 3.2 22 101-122 8-29 (178)
488 1nrj_B SR-beta, signal recogni 96.2 0.0025 8.5E-08 53.4 3.2 24 100-123 13-36 (218)
489 2a9k_A RAS-related protein RAL 96.2 0.0026 8.9E-08 51.4 3.2 23 100-122 19-41 (187)
490 3hws_A ATP-dependent CLP prote 96.2 0.0052 1.8E-07 56.2 5.5 26 98-123 50-75 (363)
491 1z0f_A RAB14, member RAS oncog 96.2 0.0027 9.1E-08 51.0 3.2 23 100-122 16-38 (179)
492 1g41_A Heat shock protein HSLU 96.2 0.0078 2.7E-07 56.9 6.7 26 100-125 51-76 (444)
493 3ihw_A Centg3; RAS, centaurin, 96.2 0.0028 9.5E-08 52.0 3.2 22 100-121 21-42 (184)
494 1g8f_A Sulfate adenylyltransfe 96.2 0.0078 2.7E-07 57.9 6.8 41 97-137 393-435 (511)
495 2g6b_A RAS-related protein RAB 96.2 0.0028 9.7E-08 51.0 3.2 22 101-122 12-33 (180)
496 3lxw_A GTPase IMAP family memb 96.2 0.0026 8.8E-08 55.2 3.1 23 100-122 22-44 (247)
497 3zvr_A Dynamin-1; hydrolase, D 96.2 0.07 2.4E-06 53.7 13.9 27 96-123 49-75 (772)
498 2bme_A RAB4A, RAS-related prot 96.2 0.0028 9.5E-08 51.4 3.1 23 100-122 11-33 (186)
499 1r6b_X CLPA protein; AAA+, N-t 96.1 0.024 8E-07 57.1 10.5 24 100-123 489-512 (758)
500 1m7b_A RND3/RHOE small GTP-bin 96.1 0.0028 9.7E-08 51.6 3.1 22 101-122 9-30 (184)
No 1
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=1.6e-50 Score=386.77 Aligned_cols=301 Identities=48% Similarity=0.743 Sum_probs=276.2
Q ss_pred CcchHHHHHHHHHHHHH----HHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy2881 1 MKINWITRLKESLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNV 76 (302)
Q Consensus 1 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (302)
.||+||.+|++++++++ +++.++|+++.++++.+++|+..|+++||+.+++.+|++.++++...++..+.+.++.+
T Consensus 191 ~~~~~~~~l~~~l~kt~~~l~~~l~~~~~~~~ide~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 270 (503)
T 2yhs_A 191 TKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGL 270 (503)
T ss_dssp CHHHHHHHHHHHTHHHHTTSTTHHHHHHTTCBCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCBGGGHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 37899999999999996 56778888888999999999999999999999999999999998887777788999999
Q ss_pred HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881 77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156 (302)
Q Consensus 77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~ 156 (302)
+++.|.+.+.+..+++||++.+|++++|+||||||||||+++|+|++++++|+|.+.+.|+++.++.+|+..|+.+.+++
T Consensus 271 l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~ 350 (503)
T 2yhs_A 271 LKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP 350 (503)
T ss_dssp HHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCce
Confidence 99999999998888999999999999999999999999999999999999999999999999988888998887777888
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~ 236 (302)
++.+....++...+++.+..+...+.|++|+|++|+.++...++.+|.++.+.........+|++.+++++++|++.+.+
T Consensus 351 vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ 430 (503)
T 2yhs_A 351 VIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ 430 (503)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH
T ss_pred EEecccCcCHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH
Confidence 88887777787788888888888999999999999888888999999888765444444568999999999999999999
Q ss_pred HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~ 301 (302)
++.|+..++++++|+||+|++.++|.++++++.+++||.|+|+||+++||++|+|++|+++|||.
T Consensus 431 ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~ 495 (503)
T 2yhs_A 431 AKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFAR 495 (503)
T ss_dssp HHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC
T ss_pred HHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999984
No 2
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=8.3e-49 Score=357.82 Aligned_cols=291 Identities=47% Similarity=0.709 Sum_probs=260.3
Q ss_pred cchHHHHHHHHHHHHH----HHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy2881 2 KINWITRLKESLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVL 77 (302)
Q Consensus 2 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 77 (302)
-|++|.++++++++++ +.+.++|.+++++++.++++++.|+++||+++++++|++.+++ .+++ +++++
T Consensus 12 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~-------~~~~-~~~~~ 83 (306)
T 1vma_A 12 HMGLFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEE-------KDGD-ALESL 83 (306)
T ss_dssp --CHHHHHHHHHHHHHHHTHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTT-------CCSC-HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-------cCHH-HHHHH
Confidence 3789999999999996 5566777655899999999999999999999999999998875 2345 89999
Q ss_pred HHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe
Q psy2881 78 HNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157 (302)
Q Consensus 78 ~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~ 157 (302)
.+.|.+.+.+.- ++++...+|++++|+|||||||||++++||+++++.+|+|.+.+.|++|.++.+|+..|.+..++++
T Consensus 84 ~~~l~~~l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~ 162 (306)
T 1vma_A 84 KEIILEILNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV 162 (306)
T ss_dssp HHHHHHHTCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHhCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE
Confidence 999999997643 6677778899999999999999999999999999999999999999999999999999998888888
Q ss_pred eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH
Q psy2881 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI 237 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~ 237 (302)
+....+.++....++++++++..+|+++|+|||++.+....++++|.++.+...+.+...++.+.+|++++++++.+.++
T Consensus 163 ~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a 242 (306)
T 1vma_A 163 ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA 242 (306)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH
T ss_pred EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH
Confidence 87766778877777889999999999999999999888999999999988765554555688899999999888888888
Q ss_pred HHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 238 ~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~ 301 (302)
+.|.+..+++++|+||+|++.++|.+++++..+++||.|+++||+++||++|+|++|+++|||.
T Consensus 243 ~~~~~~~~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~~ 306 (306)
T 1vma_A 243 KIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLSE 306 (306)
T ss_dssp HHHHHHSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTCC
T ss_pred HHHHhcCCCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 9998889999999999999999999999999999999999999999999999999999999984
No 3
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.8e-47 Score=355.37 Aligned_cols=299 Identities=39% Similarity=0.588 Sum_probs=265.4
Q ss_pred cchHHHHHHHHHHHHHHHH---HHhhhc-CcCC-hHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy2881 2 KINWITRLKESLSKTACNL---KSLIVN-KKID-KNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNV 76 (302)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~-~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (302)
+|+||++|+++++++++++ .++|++ ++++ ++.++++++.|+++||+.+++++|++.+++....++..+.+.++++
T Consensus 53 ~~~~f~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (359)
T 2og2_A 53 AKSDVEKVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDA 132 (359)
T ss_dssp --CHHHHHHHHTHHHHHHHTHHHHHHTTCCGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCSHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 5789999999999997655 466765 4688 9999999999999999999999999999999988888889999999
Q ss_pred HHHHHHHHhhccC--CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCC
Q psy2881 77 LHNLLVNLLKSLE--KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYND 154 (302)
Q Consensus 77 l~~~l~~~l~~~l--~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~ 154 (302)
+.+.|.+.+.+.. .+++|++++|++++|+||||||||||+++|+|+++|++|+|.+.+.|+++.++.+|+..|+.+.+
T Consensus 133 l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~ 212 (359)
T 2og2_A 133 LKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTG 212 (359)
T ss_dssp HHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcC
Confidence 9999999998765 68999999999999999999999999999999999999999999999999999999998887778
Q ss_pred CCeeecCCC-CCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhH
Q psy2881 155 VPVISEKKI-TDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNT 233 (302)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~ 233 (302)
++++.+... .++...+++.+..+...+.+.+++|+++..+.....+.+|.+........+...++++.+++|++.|.+.
T Consensus 213 i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~ 292 (359)
T 2og2_A 213 CEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNM 292 (359)
T ss_dssp CEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGG
T ss_pred eEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCH
Confidence 888887766 6787788888877776778899999999777777888888865544445555668889999998888888
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 234 LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 234 ~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
..+...|++..+++++++||+|+++++|.+++++..++.||.|+++||.++||++|+|++|+++|||
T Consensus 293 ~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 293 LPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp HHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 8888999888899999999999999999999999999999999999999999999999999999986
No 4
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=1.8e-46 Score=345.54 Aligned_cols=293 Identities=35% Similarity=0.557 Sum_probs=253.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhh----------------hcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHH
Q psy2881 3 INWITRLKESLSKTACNLKSLI----------------VNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKII 62 (302)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 62 (302)
-|||++||+.|+++++++...+ ....+++ +++++|+..|+++||+.+++++|++.+++.+
T Consensus 5 ~~mf~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~ 84 (328)
T 3e70_C 5 ASMFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKL 84 (328)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4899999999999987655533 2335665 5788999999999999999999999999998
Q ss_pred hcCCC----CCHHHHHHHHHHHHHHHhhccCCCcce-----ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881 63 YSKKL----FNTEQVRNVLHNLLVNLLKSLEKPLIF-----KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA 133 (302)
Q Consensus 63 ~~~~~----~~~~~~~~~l~~~l~~~l~~~l~~i~l-----~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~ 133 (302)
.+++. ...+.+..++.+.+.+.+.+.- ++++ ..++|++++|+||||||||||+++|+|+++|++|+|.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 85 VGKKVRIGTDKGKIIEEAVKEAVSEILETSR-RIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp TTCEEECC---CHHHHHHHHHHHHHHSCCSS-CCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhcccCCccCHHHHHHHHHHHHHHHHhCCcc-ccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 76542 2346788889999988887542 2333 347899999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchh
Q psy2881 134 ACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKK 213 (302)
Q Consensus 134 ~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~ 213 (302)
+.|+++.++.+|+..|++..+++++.+....++...+++.+..+...+++++++|++|..+....++++|..+.+.
T Consensus 164 g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ra---- 239 (328)
T 3e70_C 164 ASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARV---- 239 (328)
T ss_dssp EECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHH----
T ss_pred eecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHH----
Confidence 9999999999999999999999998888888888888888888888889999999999777777788888887654
Q ss_pred hccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHH
Q psy2881 214 IFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVD 293 (302)
Q Consensus 214 i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~ 293 (302)
+.+|...+++|++.+++.+.+.+.|++..+++++|+||+|+++++|.++++++.+++||.|+++||.|+||++|+|++
T Consensus 240 --l~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~ 317 (328)
T 3e70_C 240 --TKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEW 317 (328)
T ss_dssp --HCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHH
T ss_pred --hcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHH
Confidence 357888999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCC
Q psy2881 294 FVNALLNQN 302 (302)
Q Consensus 294 ~~~~l~~~~ 302 (302)
|+++|||.+
T Consensus 318 ~~~~llg~~ 326 (328)
T 3e70_C 318 FLERIFGEE 326 (328)
T ss_dssp HHHHHTC--
T ss_pred HHHHHhCCc
Confidence 999999853
No 5
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=2.8e-45 Score=334.32 Aligned_cols=293 Identities=39% Similarity=0.603 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHH---HHHhhhc-CcCC-hHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy2881 8 RLKESLSKTACN---LKSLIVN-KKID-KNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLV 82 (302)
Q Consensus 8 ~~~~~~~~~~~~---~~~~~~~-~~~~-~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 82 (302)
++++++++++++ +.++|++ +.++ ++.++++++.|+++||+++++++|++.+++....++..+.+.+++++.+.|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (302)
T 3b9q_A 2 KVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVL 81 (302)
T ss_dssp HHHHHTHHHHHHHTHHHHHHTTCCGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 677888887654 5577765 4788 9999999999999999999999999999999888877788999999999999
Q ss_pred HHhhccC--CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeec
Q psy2881 83 NLLKSLE--KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160 (302)
Q Consensus 83 ~~l~~~l--~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~ 160 (302)
+.+.+.. .+++|++++|++++|+||||||||||+++|+|+++|++|+|.+.+.|+++.++.+|+..|+.+.+++++.+
T Consensus 82 ~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q 161 (302)
T 3b9q_A 82 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVA 161 (302)
T ss_dssp HHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECC
T ss_pred HHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEe
Confidence 9997654 68999999999999999999999999999999999999999999999999999999998887778888877
Q ss_pred CCC-CCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHH
Q psy2881 161 KKI-TDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKE 239 (302)
Q Consensus 161 ~~~-~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~ 239 (302)
... .++...+++.+..+...+.+.+++|+++..+.....+.+|.+........+...+++..+++|++.|.+...+.+.
T Consensus 162 ~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~ 241 (302)
T 3b9q_A 162 EGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQARE 241 (302)
T ss_dssp C--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHH
Confidence 666 6777778888877666778899999999767777788888755444444555568888999998888888888889
Q ss_pred HHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 240 FSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 240 f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
|++..+++++++||+|++.++|.+++++..++.||.|+++||.++||++|+|++|+++|||
T Consensus 242 ~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 242 FNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp HHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 9888899999999999999999999999999999999999999999999999999999986
No 6
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=1.4e-45 Score=336.44 Aligned_cols=290 Identities=42% Similarity=0.646 Sum_probs=231.0
Q ss_pred chHHHHHHHHHHHHHHHHHHh--hhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy2881 3 INWITRLKESLSKTACNLKSL--IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNL 80 (302)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (302)
|+||++|+++++++++++.+- |.+ .+ ++.++++++.|+++||+.+++++|++.+++... +.+++++.+.
T Consensus 1 ~~~~~~l~~~l~~~~~~~~~~~~~~~-~~-~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 71 (304)
T 1rj9_A 1 MGFFDRLKAGLAKTRERLLKAIPWGG-NL-EEVLEELEMALLAADVGLSATEEILQEVRASGR-------KDLKEAVKEK 71 (304)
T ss_dssp ---------------------------CH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-------SSTTHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcccccch-hh-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 689999999999997666542 333 56 889999999999999999999999999986542 5667888888
Q ss_pred HHHHhhccCC-----Ccceec-------CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881 81 LVNLLKSLEK-----PLIFKK-------CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148 (302)
Q Consensus 81 l~~~l~~~l~-----~i~l~~-------~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~ 148 (302)
|.+.+.+... ++++.- .+|++++|+||||||||||+++|+|+++|++|+|.+.+.|+++.++.+|+..
T Consensus 72 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~ 151 (304)
T 1rj9_A 72 LVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSE 151 (304)
T ss_dssp HTTTTCTTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHH
T ss_pred HHHHhCcccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHH
Confidence 8888765322 233321 2689999999999999999999999999999999999999999888889988
Q ss_pred hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+++.+++++.+....++...+++.++.+...+++++++|++|..+....++.+|.+......+.....++.+.+++|+.
T Consensus 152 ~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~ 231 (304)
T 1rj9_A 152 WGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAV 231 (304)
T ss_dssp HHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETT
T ss_pred HHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHH
Confidence 88777888888877778877788888877777899999999997777778888888766555555666788899999999
Q ss_pred CChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881 229 TGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 229 ~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~ 301 (302)
.+.+.+.+...|....+++++++||.|+++++|.++++.+.+++||.|+|+||+++||++|+|++|+++|||.
T Consensus 232 t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~~ 304 (304)
T 1rj9_A 232 TGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLED 304 (304)
T ss_dssp BCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 9999898999998888999999999999999999999999999999999999999999999999999999983
No 7
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=1.1e-43 Score=326.04 Aligned_cols=282 Identities=37% Similarity=0.603 Sum_probs=247.7
Q ss_pred HHHHHHhhhc-CcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccC-----C
Q psy2881 17 ACNLKSLIVN-KKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLE-----K 90 (302)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l-----~ 90 (302)
.+++.++|++ +.++++.+++|++.|+++||+++++.+|++.+++....++..+. +++++.+.|.+.+.+.- .
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~ 96 (320)
T 1zu4_A 19 SKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFEN--IKDALVESLYQAYTDNDWTNKKY 96 (320)
T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHHH--HHHHHHHHHHHHHHCSCC----C
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHHH--HHHHHHHHHHHHhCccccccccc
Confidence 3566778876 58999999999999999999999999999999998766553333 88999999999998765 6
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcc---cCCCCee-ecCCCCCH
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGK---YNDVPVI-SEKKITDP 166 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~---~~~~~~~-~~~~~~~~ 166 (302)
+++|+..+|++++++|||||||||++++||+++.+.+|+|.+.+.|+++.++.+|+..|.+ ..+++++ ......++
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p 176 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADP 176 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCH
Confidence 8999999999999999999999999999999999999999999999999998889888877 6777777 55555677
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCC
Q psy2881 167 AAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRI 246 (302)
Q Consensus 167 ~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~ 246 (302)
....++.+..++..++|+||+|+|++.+....+++++.++.+.....+...+|.+.+|++++.+++.+.+++.|++..++
T Consensus 177 ~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~~~~~~~~~i 256 (320)
T 1zu4_A 177 ASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADV 256 (320)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHHHHHhhcCCC
Confidence 76777778777889999999999998888778888888876654433344578889999999888889888889888899
Q ss_pred CeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 247 TGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 247 ~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
.++|+||+|++.++|.++++...+++|+.|+++||+++||++|+|++|+++|||
T Consensus 257 ~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~ 310 (320)
T 1zu4_A 257 SGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS 310 (320)
T ss_dssp CEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG
T ss_pred cEEEEeCCCCCCchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999998
No 8
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=1.4e-40 Score=315.57 Aligned_cols=286 Identities=34% Similarity=0.543 Sum_probs=248.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcCChH----HHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHH
Q psy2881 5 WITRLKESLSKTACNLKSLIVNKKIDKN----LYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNV 76 (302)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 76 (302)
+|+.|.++++.. +.++.+...++++ .+++|+..|+++||+.+++..+++.+++....++. .+.+.+.++
T Consensus 2 ~~~~l~~~l~~~---~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~ 78 (443)
T 3dm5_A 2 VLDNLGKALANT---LKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKI 78 (443)
T ss_dssp CSTHHHHHHHHH---HHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHH
Confidence 356666666554 4444445578864 57899999999999999999999999998876653 356788899
Q ss_pred HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881 77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156 (302)
Q Consensus 77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~ 156 (302)
+.+.|.+.+.+.-..+.+. .++.+++++||+||||||++.+||.++...+.+|.+.++|++|.++.+|++.|++..+++
T Consensus 79 l~~eL~~~L~~~~~~~~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvp 157 (443)
T 3dm5_A 79 VYEELTKFLGTEAKPIEIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIE 157 (443)
T ss_dssp HHHHHHHHTTSSCCCCCCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHhcCcccccccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCc
Confidence 9999999887522223332 357899999999999999999999999988899999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~ 236 (302)
++......++...+.+++..+...++|++|+||||+.+....++.++.++.+. ..+|.+.+|++++.|++.+.+
T Consensus 158 v~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~------~~pd~vlLVvDA~~gq~a~~~ 231 (443)
T 3dm5_A 158 VFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNV------IHPHEVILVIDGTIGQQAYNQ 231 (443)
T ss_dssp EECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH------HCCSEEEEEEEGGGGGGHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHh------hcCceEEEEEeCCCchhHHHH
Confidence 98877777888888888888888889999999999888888899999888654 247899999999999988989
Q ss_pred HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
++.|.+..+++++|+||+|+++++|.++++...+++||.|+++||.++||++|+|++|+++|||
T Consensus 232 a~~f~~~~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg 295 (443)
T 3dm5_A 232 ALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG 295 (443)
T ss_dssp HHHHHHSCTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT
T ss_pred HHHHHhhCCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 9
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=4.6e-40 Score=299.09 Aligned_cols=285 Identities=32% Similarity=0.484 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCC---C-HHHHHHH
Q psy2881 5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLF---N-TEQVRNV 76 (302)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~ 76 (302)
||++|+++++++.++ ++.++.+++ +.+++|+..|+.+|++.+++..+++.+.....++... + .+++...
T Consensus 1 m~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~ 77 (295)
T 1ls1_A 1 MFQQLSARLQEAIGR---LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILAT 77 (295)
T ss_dssp CCHHHHHHHHHHHHT---TTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHH
Confidence 578899998876444 555667885 6788999999999999999999999998776665432 3 3778888
Q ss_pred HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881 77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156 (302)
Q Consensus 77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~ 156 (302)
..+.+...+....++++|+ +|++++++|+||+||||++++||+++.+.+|+|.+.+.|+++.++..|+..+.+..+++
T Consensus 78 ~~~~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~ 155 (295)
T 1ls1_A 78 VYEALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 155 (295)
T ss_dssp HHHHHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeE
Confidence 8888888886544678888 89999999999999999999999999999999999999999988888888888878888
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~ 236 (302)
++......++....+.+++.+...++|++|+|||+........+..+.++.+. +.++...+|++++.+.+.+.+
T Consensus 156 ~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~------~~~~~~~lv~~~~~~~~~~~~ 229 (295)
T 1ls1_A 156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV------LGPDEVLLVLDAMTGQEALSV 229 (295)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH------HCCSEEEEEEEGGGTHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh------cCCCEEEEEEeCCCcHHHHHH
Confidence 88765555676666677887777899999999998666566777888777654 247788888988877788888
Q ss_pred HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
++.|++.+++.++|+||+|++.++|.+++++..+++||.|+|+||+++||++|+|++|+++|||
T Consensus 230 ~~~~~~~~~i~givlnk~d~~~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~ 293 (295)
T 1ls1_A 230 ARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG 293 (295)
T ss_dssp HHHHHHHTCCCEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTT
T ss_pred HHHHhhcCCCCEEEEECCCCCccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhc
Confidence 8889888888999999999999999999999999999999999999999999999999999997
No 10
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=8.3e-40 Score=309.75 Aligned_cols=285 Identities=32% Similarity=0.480 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHH
Q psy2881 5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNV 76 (302)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 76 (302)
||++|.++++++. .+++....+++ +.+++++..|+++||+.+++++|++.+++...+++. .+.+.+..+
T Consensus 1 m~~~l~~~l~~~~---~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 77 (425)
T 2ffh_A 1 MFQQLSARLQEAI---GRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILAT 77 (425)
T ss_dssp CCHHHHHHHHHHH---HTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHH
T ss_pred ChHHHHHHHHHHH---HHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHH
Confidence 4788888887764 44455567885 678999999999999999999999999998877653 456789999
Q ss_pred HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881 77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156 (302)
Q Consensus 77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~ 156 (302)
+.+.+...+....++++|+ +|++++++|||||||||++.+||+++.+.+++|.+.+.|+++.++.+|+..+++..+++
T Consensus 78 v~~~L~~~~~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 78 VYEALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp HHHHHHHHTTSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCcc
Confidence 9999999997655678887 88999999999999999999999999999999999999999999999999999888999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~ 236 (302)
++......++.....+++..+...++|++|+|+||+.+....++.++.++.+. +.++.+.+|++++.+++.+.+
T Consensus 156 v~~~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~------~~pd~vlLVvDa~tgq~av~~ 229 (425)
T 2ffh_A 156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV------LGPDEVLLVLDAMTGQEALSV 229 (425)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH------HCCSEEEEEEEGGGTTHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc------cCCceEEEEEeccchHHHHHH
Confidence 88876666776666677776666889999999999777777788888777553 357888999999888888888
Q ss_pred HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
++.|++.+++.++|+||+|++.++|.+++++..+++||.|+++||.++||++|+|++++++|+|
T Consensus 230 a~~f~~~l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg 293 (425)
T 2ffh_A 230 ARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG 293 (425)
T ss_dssp HHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHT
T ss_pred HHHHHhcCCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhc
Confidence 8999888999999999999999999999999999999999999999999999999999999997
No 11
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=2.5e-40 Score=313.75 Aligned_cols=274 Identities=35% Similarity=0.534 Sum_probs=238.7
Q ss_pred HHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHhhccCC-
Q psy2881 20 LKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNVLHNLLVNLLKSLEK- 90 (302)
Q Consensus 20 ~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~l~~~l~- 90 (302)
++++.+...+++ +++++|+..|+++||+.+++..+++.+++.+..++. .+.+.+.+++.+.|.+.+.+...
T Consensus 10 ~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~~~~~~ 89 (433)
T 3kl4_A 10 VRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEP 89 (433)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcCccccc
Confidence 344444556776 457899999999999999999999999998876553 35678889999999998875321
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHH
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIA 170 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~ 170 (302)
.+... .+|.+++++|||||||||++.+||+++.+.+++|.+.+.|++|.++.+|+..+++..+++++......++....
T Consensus 90 ~~~~~-~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~ 168 (433)
T 3kl4_A 90 NVNPT-KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIA 168 (433)
T ss_dssp CCSCC-SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHH
T ss_pred ccccc-CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHH
Confidence 12222 36899999999999999999999999999999999999999999999999999999999998877777887777
Q ss_pred HHHHHHHHhCCCCeEEEcCCCCcc--chHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCe
Q psy2881 171 FNAINIAQKKNTDIVIVDTSGRLS--TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITG 248 (302)
Q Consensus 171 ~~~la~al~~~~~llllDEP~d~~--~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~ 248 (302)
..+++.+...++|++|+||||+.+ ....++.++.++.+.. .++.+.+|++++.|++.+.+++.|++.+++++
T Consensus 169 ~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~------~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~g 242 (433)
T 3kl4_A 169 KKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL------KPDDVILVIDASIGQKAYDLASRFHQASPIGS 242 (433)
T ss_dssp HHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH------CCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEE
T ss_pred HHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh------CCcceEEEEeCccchHHHHHHHHHhcccCCcE
Confidence 777877777899999999999777 7778888888876642 47899999999999988889999999999999
Q ss_pred EEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881 249 LIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300 (302)
Q Consensus 249 ~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~ 300 (302)
+|+||+|+++++|.++++...+++||.|+++||.++||++|+|++|+++|||
T Consensus 243 VIlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg 294 (433)
T 3kl4_A 243 VIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILG 294 (433)
T ss_dssp EEEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHC
T ss_pred EEEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999998
No 12
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=1.5e-39 Score=295.71 Aligned_cols=275 Identities=35% Similarity=0.528 Sum_probs=237.8
Q ss_pred HHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHhhccCCC
Q psy2881 20 LKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNVLHNLLVNLLKSLEKP 91 (302)
Q Consensus 20 ~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~l~~~l~~ 91 (302)
+.+++.++.+++ +.++++++.|+++||+++++++|++.+++...+++. .+.+.+.+.+.+.+.+.+....++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 90 (297)
T 1j8m_F 11 VRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKEP 90 (297)
T ss_dssp HHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHhcccccc
Confidence 444455567887 678999999999999999999999999998876653 345778899999999999765567
Q ss_pred -cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHH
Q psy2881 92 -LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIA 170 (302)
Q Consensus 92 -i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~ 170 (302)
++++.+ |.+++++|+||+||||++.+||+.+.+.+++|.+.+.|+++.++.+|++.|++..+++++......++....
T Consensus 91 ~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~ 169 (297)
T 1j8m_F 91 KVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIA 169 (297)
T ss_dssp CCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHH
T ss_pred ccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHH
Confidence 888866 999999999999999999999999999999999999999999999999999888889888765556777666
Q ss_pred HHHHHHHHhCCCCeEEEcCCCCcc--chHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCe
Q psy2881 171 FNAINIAQKKNTDIVIVDTSGRLS--TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITG 248 (302)
Q Consensus 171 ~~~la~al~~~~~llllDEP~d~~--~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~ 248 (302)
.+.+..+...++|++|+|+||..+ ....++.++.++... ..++++.+|++++.+++.+.+++.|++..++.+
T Consensus 170 ~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~------~~~d~vllVvda~~g~~~~~~~~~~~~~~~i~g 243 (297)
T 1j8m_F 170 KRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEA------IKPDEVTLVIDASIGQKAYDLASKFNQASKIGT 243 (297)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHH------HCCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHH------hcCCEEEEEeeCCchHHHHHHHHHHHhhCCCCE
Confidence 666766555889999999999776 666788888777543 357889999999888888888888887788889
Q ss_pred EEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881 249 LIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 249 ~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~ 301 (302)
+|+||+|++.++|.+++++..+++|+.|+++||.++||++|+|++|+++|||.
T Consensus 244 vVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~~ 296 (297)
T 1j8m_F 244 IIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH 296 (297)
T ss_dssp EEEECGGGCTTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred EEEeCCCCCcchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999985
No 13
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=1.1e-35 Score=283.10 Aligned_cols=288 Identities=28% Similarity=0.494 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHH
Q psy2881 5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNV 76 (302)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 76 (302)
||++|.++++++. .++.+...+++ +.+++++..|+++||+.+++++|++.+++.+.+++. .+.+.+.++
T Consensus 1 m~~~l~~~l~~~~---~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (433)
T 2xxa_A 1 MFDNLTDRLSRTL---RNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKI 77 (433)
T ss_dssp ---CHHHHHHHHH---HHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHH
T ss_pred ChHHHHHHHHHHH---HHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHH
Confidence 5788888887764 33344567888 678999999999999999999999999998877653 346788899
Q ss_pred HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCC
Q psy2881 77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDV 155 (302)
Q Consensus 77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~ 155 (302)
+.+.+.+.+.+...++++.-.++.+++++|++||||||+..+||..+... +.+|.+.+.|+++.++.+|+..++...++
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l 157 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV 157 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCe
Confidence 99999999976544555554567899999999999999999999999987 88999999999999999999988888888
Q ss_pred CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHH
Q psy2881 156 PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLS 235 (302)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~ 235 (302)
+++......++.....+++..+...++|++|+|+||..+....++.+|..+... ..++...+|+++..+++.+.
T Consensus 158 ~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~------~~p~~vllVvda~~g~~~~~ 231 (433)
T 2xxa_A 158 DFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAS------INPVETLFVVDAMTGQDAAN 231 (433)
T ss_dssp EECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHH------SCCSEEEEEEETTBCTTHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHh------hcCcceeEEeecchhHHHHH
Confidence 887766556776666666766555789999999999777666788888776432 46889999999998888888
Q ss_pred HHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881 236 QIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 236 ~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~ 301 (302)
.++.|+..+++.++|+||+|++.++|.++++...+++|+.|+|+||.++|+.+|+|++++++++|.
T Consensus 232 ~~~~f~~~l~i~gvVlnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~ 297 (433)
T 2xxa_A 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGM 297 (433)
T ss_dssp HHHHHHHHSCCCCEEEECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCC
T ss_pred HHHHHhccCCCeEEEEecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCc
Confidence 888998888888999999999999999999999999999999999999999999999999999873
No 14
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=100.00 E-value=6.2e-36 Score=271.93 Aligned_cols=255 Identities=27% Similarity=0.328 Sum_probs=206.0
Q ss_pred ChHHHHHHHHHHHHCCCChHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCC
Q psy2881 30 DKNLYNELESDLLKADVGFETTQFLLNEL-KKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVN 108 (302)
Q Consensus 30 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpn 108 (302)
.++.++++++.|+++||+.+++++|++.+ ++.+..+. .+++.+++++.+.|.+.+.+.- .+++. .+|++++|+|||
T Consensus 38 ~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~~~~-~~g~vi~lvG~~ 114 (296)
T 2px0_A 38 LPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGG-LTEENVVGKLQEILCDMLPSAD-KWQEP-IHSKYIVLFGST 114 (296)
T ss_dssp -CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSSC-CCTTTHHHHHHHHHHTTSCCGG-GSCCC-CCSSEEEEEEST
T ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhcccC-CCHHHHHHHHHHHHHHHhCCcc-ccccc-CCCcEEEEECCC
Confidence 45789999999999999999999999999 55565444 3567888999999988885432 23332 478999999999
Q ss_pred CCCHHHHHHHHHhHhhhCCC-eEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q psy2881 109 GVGKTTTIGKLANYFKKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIV 187 (302)
Q Consensus 109 GsGKTTll~~Lag~~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llll 187 (302)
||||||++++||+.+.++.| +|.+.+.|+++.++.+|+..|++..++++.... ++. ....++++ +.+||++|+
T Consensus 115 GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~---~~~-~l~~al~~--~~~~dlvIi 188 (296)
T 2px0_A 115 GAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCY---TKE-EFQQAKEL--FSEYDHVFV 188 (296)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCS---SHH-HHHHHHHH--GGGSSEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecC---CHH-HHHHHHHH--hcCCCEEEE
Confidence 99999999999999998655 999999999999999999999998888765432 222 23444553 488999999
Q ss_pred cCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HHHHhhcCCCeEEEecCCCCCchhHHHHh
Q psy2881 188 DTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KEFSKILRITGLIITKLDGTTKGGILAAI 266 (302)
Q Consensus 188 DEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~f~~~~~~~~~i~tk~d~~~~~g~~~~~ 266 (302)
|+||..+.....+.++.++.. ...++...+|++++.+.+.+.+. +.|. .+++.++|+||+|++.++|.++++
T Consensus 189 DT~G~~~~~~~~~~el~~~l~------~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~g~~~~~ 261 (296)
T 2px0_A 189 DTAGRNFKDPQYIDELKETIP------FESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSLGSVFNI 261 (296)
T ss_dssp ECCCCCTTSHHHHHHHHHHSC------CCTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCCHHHHHH
T ss_pred eCCCCChhhHHHHHHHHHHHh------hcCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccchhHHHHH
Confidence 999955556666666665421 12366778888888877666664 4454 677889999999999999999999
Q ss_pred hhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881 267 AKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN 300 (302)
Q Consensus 267 ~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~ 300 (302)
+..+++||.|+++||++ +||++|+|++|+++|||
T Consensus 262 ~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 262 LAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp HHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred HHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 99999999999999999 99999999999999997
No 15
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=2.7e-33 Score=270.37 Aligned_cols=288 Identities=31% Similarity=0.470 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcCChHH----HHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHH
Q psy2881 5 WITRLKESLSKTACNLKSLIVNKKIDKNL----YNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNV 76 (302)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 76 (302)
||+.|.+++++ .+.+++....++++. +++++..|+++||+.+++..+++.+++....++. .+.+.+.++
T Consensus 2 ~~~~l~~~l~~---~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (504)
T 2j37_W 2 VLADLGRKITS---ALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHA 78 (504)
T ss_dssp ------CTTTT---TTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred CHHHHHHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHH
Confidence 47777776654 355555556788754 7899999999999999999999999988776553 345778899
Q ss_pred HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881 77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156 (302)
Q Consensus 77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~ 156 (302)
+.++|.+.+.+.-..+.+.-.++.+++|+|++|||||||+.+|+..+...+.+|.+.+.|+++.++.+|+..++...+++
T Consensus 79 v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~ 158 (504)
T 2j37_W 79 VFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIP 158 (504)
T ss_dssp HHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCce
Confidence 99999999876444444433567899999999999999999999999887889999999999999999999998888899
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~ 236 (302)
++......++.....+++..+...+++++|+|+||..+....+++++.++.+. +.++.+.+|++++.+.+.+..
T Consensus 159 v~~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~------i~pd~vllVvDa~~g~~~~~~ 232 (504)
T 2j37_W 159 FYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANA------IQPDNIVYVMDASIGQACEAQ 232 (504)
T ss_dssp EEECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHH------HCCSEEEEEEETTCCTTHHHH
T ss_pred EEccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhh------hcCceEEEEEeccccccHHHH
Confidence 88766666777666667776655889999999999766666777777776542 257888999999998877777
Q ss_pred HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~ 301 (302)
++.|.+..+++++|+||+|.+.++|.++++...+++||.|+++||.++|+.+|+|..++++++|.
T Consensus 233 a~~~~~~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~ 297 (504)
T 2j37_W 233 AKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGM 297 (504)
T ss_dssp HHHHHHHHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTT
T ss_pred HHHHHhhcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCC
Confidence 88888777888999999999999999999999999999999999999999999999999998873
No 16
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=1.2e-33 Score=268.99 Aligned_cols=284 Identities=36% Similarity=0.565 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHH
Q psy2881 7 TRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKK----LFNTEQVRNVLH 78 (302)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~ 78 (302)
+.|.+++++ .+.+++++..+++ +.+++++..|+++||+..+++++++.+++.....+ ......+...+.
T Consensus 2 ~~l~~~~~~---~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~ 78 (432)
T 2v3c_C 2 DKLGENLNK---ALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVY 78 (432)
T ss_dssp CHHHHHHHH---HHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHH
T ss_pred hHHHHHHHH---HHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHH
Confidence 445555543 3555665567776 68899999999999999999999999998876653 223344788899
Q ss_pred HHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCee
Q psy2881 79 NLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158 (302)
Q Consensus 79 ~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~ 158 (302)
+.+.+.+.....++++.-.++.+++++|++||||||++.+|++.+...+.+|.+.+.|+++.++.+|++.+++..+++++
T Consensus 79 ~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~ 158 (432)
T 2v3c_C 79 EELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIY 158 (432)
T ss_dssp HHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEE
T ss_pred HHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceE
Confidence 99988886432223333234579999999999999999999999998889999999999999999999888888888887
Q ss_pred ecC-CCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH
Q psy2881 159 SEK-KITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI 237 (302)
Q Consensus 159 ~~~-~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~ 237 (302)
... ...++.....+.+..+ .++|++|+||||..+....++.++..+.. +..++.+.+|++++.|++.+...
T Consensus 159 ~~~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~------~~~~d~vllVvda~~g~~~~~~~ 230 (432)
T 2v3c_C 159 GDETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKE------ITNPDEIILVIDGTIGQQAGIQA 230 (432)
T ss_dssp CCSSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTS------SSCCSEEEEEEEGGGGGGHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHH------HhcCcceeEEeeccccHHHHHHH
Confidence 764 3334322333445443 78999999999976666777777755421 24678888999998888777778
Q ss_pred HHHHhhc-CCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881 238 KEFSKIL-RITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301 (302)
Q Consensus 238 ~~f~~~~-~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~ 301 (302)
+.|.... ++.++|+||+|++.++|.++++...++.|+.|+++||.++||.+|+|..++++++|.
T Consensus 231 ~~~~~~~~~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~ 295 (432)
T 2v3c_C 231 KAFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGM 295 (432)
T ss_dssp HHHHTTSCSCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCS
T ss_pred HHHhhcccCCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCC
Confidence 8888777 778999999999999999999999999999999999999999999999999999984
No 17
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.92 E-value=1.5e-25 Score=197.13 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=102.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-------HHHHhcccCCC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-------QLLILGKYNDV---- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-------ql~~~~~~~~~---- 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ .+.+..+...+
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 4789999999999999999999999999999999999999999999998765432211 11111221110
Q ss_pred Cee--------ec-------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 156 PVI--------SE-------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 156 ~~~--------~~-------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
.+. .. .....-.+..+-+||||++.+|+++|+|||+ |+
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 000 00 0001112222334999999999999999998 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+...+++.|+++.+..+.+++++|||+..
T Consensus 179 ~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~ 208 (235)
T 3tif_A 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCCHHH
Confidence 999999999999987778999999999764
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=8.2e-25 Score=195.71 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=104.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH---HhcccCCCCe------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL---ILGKYNDVPV------ 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~---~~~~~~~~~~------ 157 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+..+ ++.+...+.+
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE 104 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence 5789999999999999999999999999999999999999999999998875433221111 1111111100
Q ss_pred ---eec--CCCCC--------------------------HHHHHHHHHHHHHhC------CCCeEEEcCCC---CccchH
Q psy2881 158 ---ISE--KKITD--------------------------PAAIAFNAINIAQKK------NTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 158 ---~~~--~~~~~--------------------------~~~~~~~~la~al~~------~~~llllDEP~---d~~~~~ 197 (302)
+.. ..... -.+..+-+||||++. +|++||+|||+ |+.+..
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~ 184 (266)
T 4g1u_C 105 VIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ 184 (266)
T ss_dssp HHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred HHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHH
Confidence 000 00011 112222239999999 99999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+++.|+++.+..+.+++++|||+..+..
T Consensus 185 ~i~~~l~~l~~~~~~tvi~vtHdl~~~~~ 213 (266)
T 4g1u_C 185 HTLRLLRQLTRQEPLAVCCVLHDLNLAAL 213 (266)
T ss_dssp HHHHHHHHHHHHSSEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEcCHHHHHH
Confidence 99999999987766799999999877654
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.91 E-value=2.5e-25 Score=206.41 Aligned_cols=137 Identities=17% Similarity=0.157 Sum_probs=105.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCC----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKK---- 162 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~---- 162 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ +..+.+. +.++++..
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~-~~~~r~~--Ig~v~Q~~~l~~ 118 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE-LTKARRQ--IGMIFQHFNLLS 118 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH-HHHHHTT--EEEECSSCCCCT
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH-HHHHhCc--EEEEeCCCccCC
Confidence 3789999999999999999999999999999999999999999999999876543321 1111111 11111100
Q ss_pred ---------------C-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 163 ---------------I-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 163 ---------------~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
. ..-.+..+-+||||++.+|++||+|||+ |+.+
T Consensus 119 ~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~ 198 (366)
T 3tui_C 119 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198 (366)
T ss_dssp TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 0 0111122223999999999999999998 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
...+++.|+++++..|.|++++|||+..+..
T Consensus 199 ~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 199 TRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 9999999999988779999999999987765
No 20
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.90 E-value=6.3e-25 Score=191.73 Aligned_cols=137 Identities=17% Similarity=0.099 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-------HHHHHhcccCCCC---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-------EQLLILGKYNDVP--- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-------~ql~~~~~~~~~~--- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... .++.+..+...+.
T Consensus 18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (224)
T 2pcj_A 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL 97 (224)
T ss_dssp EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCC
Confidence 578999999999999999999999999999999999999999999999887543221 1111122221110
Q ss_pred -e-----e-ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 157 -V-----I-SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 157 -~-----~-~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+ + ....... ..+..+-+||+|++.+|+++|+|||+ |+.+..
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 177 (224)
T 2pcj_A 98 TALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177 (224)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHH
T ss_pred CHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 0 0 0000000 11111123999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|+++.+. +.+++++|||...+
T Consensus 178 ~~~~~l~~l~~~-g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 178 RVMDIFLKINEG-GTSIVMVTHERELA 203 (224)
T ss_dssp HHHHHHHHHHHT-TCEEEEECSCHHHH
T ss_pred HHHHHHHHHHHC-CCEEEEEcCCHHHH
Confidence 999999999776 88999999986654
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.90 E-value=1.2e-24 Score=195.39 Aligned_cols=142 Identities=18% Similarity=0.106 Sum_probs=103.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-hHHHHHH----HhcccCCCCee---
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-AAYEQLL----ILGKYNDVPVI--- 158 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-~~~~ql~----~~~~~~~~~~~--- 158 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... .....++ +..|.....++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 378999999999999999999999999999999999999999999999887421 1111111 11111100000
Q ss_pred --------ecCCCCCH-----------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 159 --------SEKKITDP-----------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 159 --------~~~~~~~~-----------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
........ .+..+-+||+|++.+|++||+|||+ |+.+...
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~ 181 (275)
T 3gfo_A 102 VYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181 (275)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 00000111 1111223999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+++.|+++.+..+.+++++|||+..+...+
T Consensus 182 i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~ 211 (275)
T 3gfo_A 182 IMKLLVEMQKELGITIIIATHDIDIVPLYC 211 (275)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCCSSGGGGC
T ss_pred HHHHHHHHHhhCCCEEEEEecCHHHHHHhC
Confidence 999999997444899999999998876644
No 22
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.90 E-value=9.5e-25 Score=203.66 Aligned_cols=142 Identities=11% Similarity=0.135 Sum_probs=106.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--------------------HHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--------------------AYEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--------------------~~~ql 146 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ..+++
T Consensus 17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni 96 (381)
T 3rlf_A 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENM 96 (381)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHH
T ss_pred EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHH
Confidence 4789999999999999999999999999999999999999999999998764211 11111
Q ss_pred H------------------HhcccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 L------------------ILGKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
. .+.+..++.-+... ....-.+..+-+||||++.+|++||+|||+ |+..+..++++|
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l 176 (381)
T 3rlf_A 97 SFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 176 (381)
T ss_dssp THHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 1 11111111110000 011223334445999999999999999998 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhcCC
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+++.+..+.+++++|||...+...+
T Consensus 177 ~~l~~~~g~tii~vTHd~~ea~~~a 201 (381)
T 3rlf_A 177 SRLHKRLGRTMIYVTHDQVEAMTLA 201 (381)
T ss_dssp HHHHHHHCCEEEEECSCHHHHHHHC
T ss_pred HHHHHhCCCEEEEEECCHHHHHHhC
Confidence 9998888999999999988776533
No 23
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.90 E-value=1.5e-24 Score=200.90 Aligned_cols=141 Identities=11% Similarity=0.133 Sum_probs=103.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC----Ch--------------------hH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF----RA--------------------AA 142 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~----~~--------------------~~ 142 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++. .. ..
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV 97 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV 97 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCH
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCH
Confidence 4789999999999999999999999999999999999999999999997751 10 01
Q ss_pred HHHHHHhc------------------ccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 143 YEQLLILG------------------KYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 143 ~~ql~~~~------------------~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
.+.+.+.. +..++.-+.. .....-.+..+-+||||++.+|+++|+|||+ |+..+..+
T Consensus 98 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l 177 (359)
T 3fvq_A 98 YRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI 177 (359)
T ss_dssp HHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 11111100 0000000000 0001112223334999999999999999997 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+++|.++.+..+.+++++|||...+...
T Consensus 178 ~~~l~~~~~~~g~tvi~vTHd~~ea~~~ 205 (359)
T 3fvq_A 178 REDMIAALRANGKSAVFVSHDREEALQY 205 (359)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 9999998887899999999998877653
No 24
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.89 E-value=7.4e-24 Score=188.67 Aligned_cols=141 Identities=14% Similarity=0.147 Sum_probs=103.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----C--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----P-- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~-- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+. +.+..+...+ .
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 100 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVL 100 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHH
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHH
Confidence 47899999999999999999999999999999999999999999999987643221111 1111221110 0
Q ss_pred ----eeecC--CC------------CCH--HHHH--------------------------HHHHHHHHhCCCCeEEEcCC
Q psy2881 157 ----VISEK--KI------------TDP--AAIA--------------------------FNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 157 ----~~~~~--~~------------~~~--~~~~--------------------------~~~la~al~~~~~llllDEP 190 (302)
+.... .. ... ...+ +-+||+|++.+|+++|+|||
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP 180 (257)
T 1g6h_A 101 ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180 (257)
T ss_dssp HHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred HHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 00000 00 000 1111 11299999999999999999
Q ss_pred C---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
+ |+.+...+++.|+++++. +.+++++|||+..+...+
T Consensus 181 ts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~ 220 (257)
T 1g6h_A 181 IAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYI 220 (257)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGC
T ss_pred ccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhC
Confidence 8 999999999999999765 889999999988765543
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=5.1e-24 Score=187.86 Aligned_cols=138 Identities=17% Similarity=0.234 Sum_probs=100.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----Ce-
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----PV- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~~- 157 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+. +.+..+...+ .+
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 99 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVY 99 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHH
Confidence 47899999999999999999999999999999999999999999999987643222111 1111121110 00
Q ss_pred ----eec--C-CC---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881 158 ----ISE--K-KI---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM 200 (302)
Q Consensus 158 ----~~~--~-~~---------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~ 200 (302)
+.. . .. ....+..+-+||+|++.+|+++|+|||+ |+.+...++
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 179 (240)
T 1ji0_A 100 ENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179 (240)
T ss_dssp HHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 000 0 00 0111112223999999999999999998 999999999
Q ss_pred HHHHHHHHHhchhhccccceeehhh
Q psy2881 201 RELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 201 ~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
+.|+++.+ .+.+++++|||...+.
T Consensus 180 ~~l~~~~~-~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 180 EVIQKINQ-EGTTILLVEQNALGAL 203 (240)
T ss_dssp HHHHHHHH-TTCCEEEEESCHHHHH
T ss_pred HHHHHHHH-CCCEEEEEecCHHHHH
Confidence 99999976 5889999999875543
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=1.2e-23 Score=187.18 Aligned_cols=141 Identities=15% Similarity=0.105 Sum_probs=101.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYND---------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~---------- 154 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ..++.+..+...
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 108 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEY 108 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHH
Confidence 47899999999999999999999999999999999999999999999987643110 000111111111
Q ss_pred ---------------------------CCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 155 ---------------------------VPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 155 ---------------------------~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
+.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 188 (256)
T 1vpl_A 109 LRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 188 (256)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHH
Confidence 00000 00001112222223999999999999999998 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhcCC
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
|+++.+. +.+++++|||+..+...+
T Consensus 189 l~~l~~~-g~tiiivtHd~~~~~~~~ 213 (256)
T 1vpl_A 189 LKQASQE-GLTILVSSHNMLEVEFLC 213 (256)
T ss_dssp HHHHHHT-TCEEEEEECCHHHHTTTC
T ss_pred HHHHHhC-CCEEEEEcCCHHHHHHHC
Confidence 9998754 889999999987765533
No 27
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.89 E-value=6e-24 Score=197.30 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=104.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--------------------HHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--------------------AYEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--------------------~~~ql 146 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+.+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 96 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENI 96 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHH
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 4789999999999999999999999999999999999999999999997753211 11222
Q ss_pred HHhc------------------ccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LILG------------------KYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~~~------------------~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.+.. +..++.-+.. .....-.+..+-+||||++.+|+++|+|||+ |+..+..++++|
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 176 (359)
T 2yyz_A 97 AFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI 176 (359)
T ss_dssp HGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 1110 0011100000 0011122333345999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhc
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+++.+..+.+++++|||...+..
T Consensus 177 ~~l~~~~g~tvi~vTHd~~~~~~ 199 (359)
T 2yyz_A 177 KHLQQELGITSVYVTHDQAEAMT 199 (359)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHH
T ss_pred HHHHHhcCCEEEEEcCCHHHHHH
Confidence 99987778999999999877654
No 28
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=5.1e-24 Score=197.36 Aligned_cols=140 Identities=11% Similarity=0.123 Sum_probs=104.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh--------------------hHHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA--------------------AAYEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~--------------------~~~~ql 146 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...+.+
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 108 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV 108 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 478999999999999999999999999999999999999999999998775321 111111
Q ss_pred HH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.+ +.+..++.-+.. .....-.+..+-+||||++.+|+++|+|||+ |+..+..++++|
T Consensus 109 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 188 (355)
T 1z47_A 109 SFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV 188 (355)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11 111111110000 0011223334445999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhc
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+++.+..+.+++++|||...+..
T Consensus 189 ~~l~~~~g~tvi~vTHd~~~a~~ 211 (355)
T 1z47_A 189 RQVHDEMGVTSVFVTHDQEEALE 211 (355)
T ss_dssp HHHHHHHTCEEEEECSCHHHHHH
T ss_pred HHHHHhcCCEEEEECCCHHHHHH
Confidence 99987778999999999877654
No 29
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.89 E-value=1.9e-23 Score=186.49 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=100.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC--Chh---HHHHHHHhcccCCCC----e
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF--RAA---AYEQLLILGKYNDVP----V 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~--~~~---~~~ql~~~~~~~~~~----~ 157 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++. ... ...++.+..+...+. +
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 117 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV 117 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCH
Confidence 4789999999999999999999999999999999999999999999998763 111 011122222221100 0
Q ss_pred -----e-e-cCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 158 -----I-S-EKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 158 -----~-~-~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
+ . ...... ..+..+-+||+|++.+|+++|+|||+ |+.+...
T Consensus 118 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 197 (263)
T 2olj_A 118 LNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 197 (263)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHH
Confidence 0 0 000001 11111223999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhh
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
+++.|+++.+. +.+++++|||+..+.
T Consensus 198 ~~~~l~~l~~~-g~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 198 VLSVMKQLANE-GMTMVVVTHEMGFAR 223 (263)
T ss_dssp HHHHHHHHHHT-TCEEEEECSCHHHHH
T ss_pred HHHHHHHHHhC-CCEEEEEcCCHHHHH
Confidence 99999999766 889999999876543
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.89 E-value=9.9e-24 Score=188.34 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=100.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC----------hhH------HHHHHHhc
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR----------AAA------YEQLLILG 150 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~----------~~~------~~ql~~~~ 150 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.. ... ..++.+..
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 99 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF 99 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEe
Confidence 47899999999999999999999999999999999999999999999987641 110 11111111
Q ss_pred ccCCC----Ce-----e-e-cCCC------------------------------CCHHHHHHHHHHHHHhCCCCeEEEcC
Q psy2881 151 KYNDV----PV-----I-S-EKKI------------------------------TDPAAIAFNAINIAQKKNTDIVIVDT 189 (302)
Q Consensus 151 ~~~~~----~~-----~-~-~~~~------------------------------~~~~~~~~~~la~al~~~~~llllDE 189 (302)
+...+ .+ + . .... ....+..+-+||+|++.+|+++|+||
T Consensus 100 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 179 (262)
T 1b0u_A 100 QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 179 (262)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred cCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 21110 00 0 0 0000 01112222249999999999999999
Q ss_pred CC---CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 190 SG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 190 P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
|+ |+.+...+++.|+++.+. +.+++++|||+..+.
T Consensus 180 Pts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~ 217 (262)
T 1b0u_A 180 PTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFAR 217 (262)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH
Confidence 98 999999999999999765 889999999876643
No 31
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.89 E-value=5.5e-24 Score=197.77 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=104.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--------------------HHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--------------------AYEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--------------------~~~ql 146 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+.+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 96 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNI 96 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHH
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHH
Confidence 4789999999999999999999999999999999999999999999997753211 11111
Q ss_pred HH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 147 LI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 147 ~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.+ +.+..++.-+.. .....-.+..+-+||||++.+|+++|+|||+ |+..+..+++.|
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 176 (362)
T 2it1_A 97 AFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAEL 176 (362)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 11 111111110000 0011223333445999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhc
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+++.+..+.+++++|||...+..
T Consensus 177 ~~l~~~~g~tvi~vTHd~~~a~~ 199 (362)
T 2it1_A 177 KRLQKELGITTVYVTHDQAEALA 199 (362)
T ss_dssp HHHHHHHTCEEEEEESCHHHHHH
T ss_pred HHHHHhCCCEEEEECCCHHHHHH
Confidence 99987778999999999877654
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.88 E-value=1.6e-23 Score=181.46 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=105.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC-----------------ChhHHHHHHHh
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF-----------------RAAAYEQLLIL 149 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~-----------------~~~~~~ql~~~ 149 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+.. .....+.+...
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999886531 11223333221
Q ss_pred ----------------cccCCCCeee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHH
Q psy2881 150 ----------------GKYNDVPVIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKV 209 (302)
Q Consensus 150 ----------------~~~~~~~~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~ 209 (302)
.+.+++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|+++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 182 (214)
T 1sgw_A 103 ASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182 (214)
T ss_dssp HHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence 1112221110 00112334555566999999999999999998 999999999999998764
Q ss_pred hchhhccccceeehhhcCC
Q psy2881 210 IEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 210 ~~~~i~~~~hd~~lvl~~~ 228 (302)
+.+++++|||...+...+
T Consensus 183 -g~tiiivtHd~~~~~~~~ 200 (214)
T 1sgw_A 183 -KGIVIISSREELSYCDVN 200 (214)
T ss_dssp -HSEEEEEESSCCTTSSEE
T ss_pred -CCEEEEEeCCHHHHHHhC
Confidence 789999999988765543
No 33
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.88 E-value=7.8e-24 Score=197.40 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=101.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-HHHHHhcccCCC----C-----
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-EQLLILGKYNDV----P----- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-~ql~~~~~~~~~----~----- 156 (302)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...... ..+.+..|...+ .
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 104 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENI 104 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 478999999999999999999999999999999999999999999999876422110 001111111000 0
Q ss_pred -eeecCCCCCH-----------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 157 -VISEKKITDP-----------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 157 -~~~~~~~~~~-----------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
+......... .+..+-+||||++.+|+++|+|||+ |+..+..++++|
T Consensus 105 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 184 (372)
T 1v43_A 105 AFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 184 (372)
T ss_dssp HTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 0000000010 0111223999999999999999997 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhc
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+++.+..+.+++++|||...+..
T Consensus 185 ~~l~~~~g~tvi~vTHd~~~a~~ 207 (372)
T 1v43_A 185 KKLQQKLKVTTIYVTHDQVEAMT 207 (372)
T ss_dssp HHHHHHHTCEEEEEESCHHHHHH
T ss_pred HHHHHhCCCEEEEEeCCHHHHHH
Confidence 99988778999999999877654
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.88 E-value=1.4e-23 Score=188.96 Aligned_cols=141 Identities=16% Similarity=0.115 Sum_probs=101.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC--ChhHHH---HHHHhcccC----CC--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF--RAAAYE---QLLILGKYN----DV-- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~--~~~~~~---ql~~~~~~~----~~-- 155 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++. .....+ ++.+..+.. ..
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~l 114 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE 114 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTS
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCC
Confidence 4789999999999999999999999999999999999999999999998764 211110 011111110 00
Q ss_pred Ce--------ee-----cCCCC--------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 156 PV--------IS-----EKKIT--------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 156 ~~--------~~-----~~~~~--------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
.+ .. ..... ...+..+-+||+|++.+|+++|+|||+ |+
T Consensus 115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~ 194 (279)
T 2ihy_A 115 RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDF 194 (279)
T ss_dssp BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCH
T ss_pred CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCH
Confidence 00 00 00000 001111123999999999999999998 99
Q ss_pred cchHHHHHHHHHHHHHhchhh--ccccceeehhhcCC
Q psy2881 194 STQSHLMRELKKIKKVIEKKI--FELPYEIFLIIDGN 228 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i--~~~~hd~~lvl~~~ 228 (302)
.+...+++.|+++.+. +.++ +++|||...+...+
T Consensus 195 ~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~ 230 (279)
T 2ihy_A 195 IARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANF 230 (279)
T ss_dssp HHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTC
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhC
Confidence 9999999999999776 8899 99999988765544
No 35
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.88 E-value=3.3e-23 Score=185.34 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=103.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh--------------------hHHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA--------------------AAYEQL 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~--------------------~~~~ql 146 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... ...+.+
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl 100 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV 100 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHH
Confidence 478999999999999999999999999999999999999999999988664211 112222
Q ss_pred HHhcc-----------------cCCCC--eeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881 147 LILGK-----------------YNDVP--VISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE 202 (302)
Q Consensus 147 ~~~~~-----------------~~~~~--~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~ 202 (302)
..... ..++. -+.. .......+..+-+||+|++.+|+++|+|||+ |+.+...+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 180 (266)
T 2yz2_A 101 AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 180 (266)
T ss_dssp HHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 21110 01111 0000 0011223334445999999999999999998 99999999999
Q ss_pred HHHHHHHhchhhccccceeehhhcC
Q psy2881 203 LKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 203 L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
|+++.+. +.+++++|||...+...
T Consensus 181 l~~l~~~-g~tii~vtHd~~~~~~~ 204 (266)
T 2yz2_A 181 VEKWKTL-GKTVILISHDIETVINH 204 (266)
T ss_dssp HHHHHHT-TCEEEEECSCCTTTGGG
T ss_pred HHHHHHc-CCEEEEEeCCHHHHHHh
Confidence 9999766 88999999998876653
No 36
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.88 E-value=3.2e-23 Score=182.73 Aligned_cols=137 Identities=15% Similarity=0.214 Sum_probs=99.9
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh--------------------hHHHHHH
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA--------------------AAYEQLL 147 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~--------------------~~~~ql~ 147 (302)
+++++||++++ ++++|+||||||||||+++|+|+++|++|+|.+.|.++... ...+.+.
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~ 92 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHH
Confidence 47899999999 99999999999999999999999999999999998765311 1111111
Q ss_pred H----------------hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHH
Q psy2881 148 I----------------LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKI 206 (302)
Q Consensus 148 ~----------------~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l 206 (302)
. +.+..++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 172 (240)
T 2onk_A 93 YGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp TTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1 00111111000 00011122333334999999999999999998 999999999999999
Q ss_pred HHHhchhhccccceeehhh
Q psy2881 207 KKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 207 ~~~~~~~i~~~~hd~~lvl 225 (302)
.+..+.+++++|||...+.
T Consensus 173 ~~~~g~tvi~vtHd~~~~~ 191 (240)
T 2onk_A 173 QREFDVPILHVTHDLIEAA 191 (240)
T ss_dssp HHHHTCCEEEEESCHHHHH
T ss_pred HHhcCCEEEEEeCCHHHHH
Confidence 7766889999999876544
No 37
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.88 E-value=6.5e-24 Score=196.93 Aligned_cols=139 Identities=14% Similarity=0.077 Sum_probs=102.6
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-----h--------------------hH
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-----A--------------------AA 142 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-----~--------------------~~ 142 (302)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.. . ..
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 7899999999999999999999999999999999999999999998866421 0 11
Q ss_pred HHHHHHhc------------------ccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881 143 YEQLLILG------------------KYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 143 ~~ql~~~~------------------~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l 199 (302)
.+.+.+.. +..++.-+.. .....-.+..+-+||||++.+|+++|+|||+ |+..+..+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l 179 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 11111100 0011100000 0001122233334999999999999999997 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhhc
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
++.|+++.+..+.+++++|||...+..
T Consensus 180 ~~~l~~l~~~~g~tvi~vTHd~~~~~~ 206 (353)
T 1oxx_K 180 RALVKEVQSRLGVTLLVVSHDPADIFA 206 (353)
T ss_dssp HHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999999987778999999999876654
No 38
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.88 E-value=1e-23 Score=196.81 Aligned_cols=140 Identities=11% Similarity=0.165 Sum_probs=103.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC------h--------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR------A-------------------- 140 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~------~-------------------- 140 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 96 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM 96 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCC
Confidence 47899999999999999999999999999999999999999999998866421 0
Q ss_pred hHHHHHHHh------------------cccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 141 AAYEQLLIL------------------GKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 141 ~~~~ql~~~------------------~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
...+.+.+. .+..++.-+.. .....-.+..+-+||||++.+|+++|+|||+ |+..+.
T Consensus 97 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~ 176 (372)
T 1g29_1 97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176 (372)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHH
Confidence 111111110 00011100000 0011122333334999999999999999997 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.++++|+++.+..+.+++++|||...+..
T Consensus 177 ~l~~~l~~l~~~~g~tvi~vTHd~~~a~~ 205 (372)
T 1g29_1 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMT 205 (372)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 99999999988778999999999877654
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.88 E-value=1.2e-23 Score=194.53 Aligned_cols=139 Identities=16% Similarity=0.105 Sum_probs=103.5
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHHH
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQLL 147 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql~ 147 (302)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... .+.+.
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~ 94 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLE 94 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHH
Confidence 6889999999999999999999999999999999999999999999987643211 11111
Q ss_pred H---------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881 148 I---------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK 207 (302)
Q Consensus 148 ~---------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~ 207 (302)
+ +.+..++.-+.. .....-.+..+-+||||++.+|+++|+|||+ |+..+..+++.|+++.
T Consensus 95 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~ 174 (348)
T 3d31_A 95 FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174 (348)
T ss_dssp HHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 1 000111110000 0011122333345999999999999999997 9999999999999998
Q ss_pred HHhchhhccccceeehhhc
Q psy2881 208 KVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 208 ~~~~~~i~~~~hd~~lvl~ 226 (302)
+..+.+++++|||...+..
T Consensus 175 ~~~g~tii~vTHd~~~~~~ 193 (348)
T 3d31_A 175 KKNKLTVLHITHDQTEARI 193 (348)
T ss_dssp HHTTCEEEEEESCHHHHHH
T ss_pred HhcCCEEEEEeCCHHHHHH
Confidence 7778999999999876654
No 40
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.88 E-value=9.3e-23 Score=180.51 Aligned_cols=136 Identities=19% Similarity=0.187 Sum_probs=101.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCC-------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVP------- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~------- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... .++.+..+...+.
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 102 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHH
Confidence 478999999999999999999999999999999999999999999999876432211 1111122211100
Q ss_pred --eeec----------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 157 --VISE----------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 157 --~~~~----------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+... .......+..+-+||||++.+|+++|+|||+ |+.+..
T Consensus 103 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~ 182 (247)
T 2ff7_A 103 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182 (247)
T ss_dssp HTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 0000 0112223333445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|+++. .+.+++++|||...+
T Consensus 183 ~i~~~l~~~~--~g~tviivtH~~~~~ 207 (247)
T 2ff7_A 183 VIMRNMHKIC--KGRTVIIIAHRLSTV 207 (247)
T ss_dssp HHHHHHHHHH--TTSEEEEECSSGGGG
T ss_pred HHHHHHHHHc--CCCEEEEEeCCHHHH
Confidence 9999999984 378999999998765
No 41
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=4.7e-23 Score=184.79 Aligned_cols=139 Identities=18% Similarity=0.160 Sum_probs=101.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCCCC-------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYNDVP------- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~~~------- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++.+..+...+.
T Consensus 33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 112 (271)
T 2ixe_A 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN 112 (271)
T ss_dssp CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHH
T ss_pred eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHH
Confidence 47899999999999999999999999999999999999999999999977532111 11111111211100
Q ss_pred --ee-----------------------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 157 --VI-----------------------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 157 --~~-----------------------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
+. .........+..+-+||||++.+|++||+|||+ |+.+.
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~ 192 (271)
T 2ixe_A 113 IAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192 (271)
T ss_dssp HHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred HhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 00 000011122333345999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
..+++.|+++.+..+.+++++|||...+.
T Consensus 193 ~~i~~~l~~~~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 193 LRVQRLLYESPEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 99999999886545789999999977654
No 42
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.87 E-value=7.5e-23 Score=180.69 Aligned_cols=136 Identities=14% Similarity=0.150 Sum_probs=100.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---------------------hHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---------------------AAYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---------------------~~~~q 145 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... ...+.
T Consensus 16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en 95 (243)
T 1mv5_A 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIREN 95 (243)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHH
T ss_pred ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHH
Confidence 478999999999999999999999999999999999999999999998764211 11111
Q ss_pred HHHh-------------cccCCCC-eee------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 146 LLIL-------------GKYNDVP-VIS------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 146 l~~~-------------~~~~~~~-~~~------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
+... .+..++. +.. ........+..+-+||||++.+|+++|+|||+ |+.+.
T Consensus 96 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~ 175 (243)
T 1mv5_A 96 LTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175 (243)
T ss_dssp TTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSC
T ss_pred HhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 1110 0000000 000 00122334455556999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
..+++.|.++. .+.+++++|||...+
T Consensus 176 ~~i~~~l~~~~--~~~tvi~vtH~~~~~ 201 (243)
T 1mv5_A 176 SMVQKALDSLM--KGRTTLVIAHRLSTI 201 (243)
T ss_dssp CHHHHHHHHHH--TTSEEEEECCSHHHH
T ss_pred HHHHHHHHHhc--CCCEEEEEeCChHHH
Confidence 99999999986 378999999986543
No 43
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.87 E-value=5.6e-23 Score=182.07 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=99.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCC----e--
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVP----V-- 157 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~----~-- 157 (302)
++++++||++++|++++|+||||||||||+++|+|+++|+ |+|.+.|.++...... .++.+..+...+. +
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH
Confidence 4789999999999999999999999999999999999999 9999998775322111 1111222221110 0
Q ss_pred ---eecCCC-------------------------CCHHHHHHHHHHHHHhCCCC-------eEEEcCCC---CccchHHH
Q psy2881 158 ---ISEKKI-------------------------TDPAAIAFNAINIAQKKNTD-------IVIVDTSG---RLSTQSHL 199 (302)
Q Consensus 158 ---~~~~~~-------------------------~~~~~~~~~~la~al~~~~~-------llllDEP~---d~~~~~~l 199 (302)
+..... ....+..+-+||+|++.+|+ ++|+|||+ |+.+...+
T Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l 172 (249)
T 2qi9_C 93 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172 (249)
T ss_dssp HHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred HHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence 000000 11112222239999999999 99999998 99999999
Q ss_pred HHHHHHHHHHhchhhccccceeehhh
Q psy2881 200 MRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 200 ~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
++.|+++.+. +.+++++|||...+.
T Consensus 173 ~~~l~~l~~~-g~tviivtHd~~~~~ 197 (249)
T 2qi9_C 173 DKILSALSQQ-GLAIVMSSHDLNHTL 197 (249)
T ss_dssp HHHHHHHHHT-TCEEEEECSCHHHHH
T ss_pred HHHHHHHHhC-CCEEEEEeCCHHHHH
Confidence 9999999765 889999999977653
No 44
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.87 E-value=7.4e-23 Score=186.25 Aligned_cols=138 Identities=12% Similarity=0.148 Sum_probs=102.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCCC-------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDVP------- 156 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~~------- 156 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.|+....... ++.+..|...+.
T Consensus 68 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eN 147 (306)
T 3nh6_A 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADN 147 (306)
T ss_dssp EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHH
T ss_pred ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHH
Confidence 5789999999999999999999999999999999999999999999998875432211 111111111000
Q ss_pred ----------------------------------eeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 157 ----------------------------------VISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 157 ----------------------------------~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.... .....-.+..+-+||||++.+|++||+|||+ |+.+..
T Consensus 148 i~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~ 227 (306)
T 3nh6_A 148 IRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227 (306)
T ss_dssp HHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHH
T ss_pred HHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 0000 0112223334445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+++.|.++.+ +.|+++++|++..+..
T Consensus 228 ~i~~~l~~l~~--~~Tvi~itH~l~~~~~ 254 (306)
T 3nh6_A 228 AIQASLAKVCA--NRTTIVVAHRLSTVVN 254 (306)
T ss_dssp HHHHHHHHHHT--TSEEEEECCSHHHHHT
T ss_pred HHHHHHHHHcC--CCEEEEEEcChHHHHc
Confidence 99999998854 6789999998876654
No 45
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.86 E-value=2.1e-22 Score=178.77 Aligned_cols=139 Identities=14% Similarity=0.149 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE------ecccC--C-ChhHHHHHHHhc-------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL------AACDT--F-RAAAYEQLLILG------- 150 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l------~~~d~--~-~~~~~~ql~~~~------- 150 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+ ..++. + .....+.+....
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~ 98 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF 98 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTT
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccc
Confidence 5789999999999999999999999999999999999999999853 22221 1 223334433211
Q ss_pred ---------------ccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHh
Q psy2881 151 ---------------KYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVI 210 (302)
Q Consensus 151 ---------------~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~ 210 (302)
+..++.-.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|.++.+..
T Consensus 99 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~ 178 (253)
T 2nq2_C 99 AKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178 (253)
T ss_dssp CCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 111111000 00112233444455999999999999999998 9999999999999997655
Q ss_pred chhhccccceeehhh
Q psy2881 211 EKKIFELPYEIFLII 225 (302)
Q Consensus 211 ~~~i~~~~hd~~lvl 225 (302)
+.+++++|||...+.
T Consensus 179 g~tvi~vtHd~~~~~ 193 (253)
T 2nq2_C 179 NMTVVFTTHQPNQVV 193 (253)
T ss_dssp CCEEEEEESCHHHHH
T ss_pred CCEEEEEecCHHHHH
Confidence 889999999977653
No 46
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.86 E-value=1.1e-22 Score=180.25 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH--hhhCCCeEEEecccCCChhH----------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAA---------------------- 142 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~~~g~V~l~~~d~~~~~~---------------------- 142 (302)
++++++||++++|++++|+||||||||||+++|+|+ ++|++|+|.+.|.++.....
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVT 96 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCB
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCC
Confidence 578999999999999999999999999999999998 78999999999876532111
Q ss_pred -HHHHHH---------------------hcccCCCC-e-eecC-CC-CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881 143 -YEQLLI---------------------LGKYNDVP-V-ISEK-KI-TDPAAIAFNAINIAQKKNTDIVIVDTSG---RL 193 (302)
Q Consensus 143 -~~ql~~---------------------~~~~~~~~-~-~~~~-~~-~~~~~~~~~~la~al~~~~~llllDEP~---d~ 193 (302)
.+.+.. +.+..++. - .... .. ....+..+-+||+|++.+|+++|+|||+ |+
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~ 176 (250)
T 2d2e_A 97 IANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI 176 (250)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCH
T ss_pred HHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 111110 00001110 0 0000 11 2223344456999999999999999997 99
Q ss_pred cchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+...+++.|+++.+ .+.+++++|||...+..
T Consensus 177 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~ 208 (250)
T 2d2e_A 177 DALKVVARGVNAMRG-PNFGALVITHYQRILNY 208 (250)
T ss_dssp HHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGT
T ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHH
Confidence 999999999999854 47899999999887654
No 47
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=3.9e-22 Score=177.97 Aligned_cols=137 Identities=14% Similarity=0.111 Sum_probs=100.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC------Chh------------HHHHHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF------RAA------------AYEQLLI 148 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~------~~~------------~~~ql~~ 148 (302)
++++++||+++ |++++|+||||||||||+++|+|++ |++|+|.+.|.++. +.+ ..+.+..
T Consensus 19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~ 96 (263)
T 2pjz_A 19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYL 96 (263)
T ss_dssp EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHH
T ss_pred eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHH
Confidence 47899999999 9999999999999999999999999 99999999885431 111 1222222
Q ss_pred h--------------cccCCCC-eee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881 149 L--------------GKYNDVP-VIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK 208 (302)
Q Consensus 149 ~--------------~~~~~~~-~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~ 208 (302)
+ .+.+++. -.. ........+..+-+||+|++.+|+++|+|||+ |+.+...+++.|+++.+
T Consensus 97 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 97 YEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176 (263)
T ss_dssp HHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred hhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence 1 1112221 100 01112334555566999999999999999998 99999999998887743
Q ss_pred HhchhhccccceeehhhcCCC
Q psy2881 209 VIEKKIFELPYEIFLIIDGNT 229 (302)
Q Consensus 209 ~~~~~i~~~~hd~~lvl~~~~ 229 (302)
+++++|||...+...+.
T Consensus 177 ----tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 177 ----EGILVTHELDMLNLYKE 193 (263)
T ss_dssp ----EEEEEESCGGGGGGCTT
T ss_pred ----cEEEEEcCHHHHHHhcC
Confidence 89999999887765443
No 48
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.85 E-value=2.7e-22 Score=179.49 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=101.7
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH--hhhCCCeEEEecccCCChhH----------------------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAA---------------------- 142 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~~~g~V~l~~~d~~~~~~---------------------- 142 (302)
++++++||++++|++++|+||||||||||+++|+|+ ++|++|+|.+.|.++.....
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~t 113 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVS 113 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCB
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccccc
Confidence 478999999999999999999999999999999999 46889999998876421110
Q ss_pred -HHHHH-------------------------HhcccCCCC--eeecCC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881 143 -YEQLL-------------------------ILGKYNDVP--VISEKK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG- 191 (302)
Q Consensus 143 -~~ql~-------------------------~~~~~~~~~--~~~~~~--~~~~~~~~~~~la~al~~~~~llllDEP~- 191 (302)
.+.+. .+.+..++. ...... .....+..+-+||+|++.+|+++|+|||+
T Consensus 114 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts 193 (267)
T 2zu0_C 114 NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDS 193 (267)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred HHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 01110 001111221 001111 13344555566999999999999999998
Q ss_pred --CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
|+.+...+++.|+++.+. +.+++++|||...+..
T Consensus 194 ~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 194 GLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDY 229 (267)
T ss_dssp TCCHHHHHHHHHHHHTTCCS-SCEEEEECSSGGGGGT
T ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHHHHh
Confidence 999999999999988543 7899999999877644
No 49
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.85 E-value=5.2e-22 Score=176.96 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=98.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ 145 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q 145 (302)
++++++||++++|++++|+||||||||||+++|+|+++| +|+|.+.|.++.... ..+.
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 112 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYN 112 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHH
Confidence 478999999999999999999999999999999999987 799999987653211 1111
Q ss_pred HHHhc------------ccCCCCe------------e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 146 LLILG------------KYNDVPV------------I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 146 l~~~~------------~~~~~~~------------~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+.... +..++.- . .........+..+-+||||++.+|+++|+|||+ |+.+..
T Consensus 113 l~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~ 192 (260)
T 2ghi_A 113 ILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192 (260)
T ss_dssp HHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHH
T ss_pred HhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 11100 0000000 0 000112334444556999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+++.|+++.+ +.+++++|||...+
T Consensus 193 ~i~~~l~~l~~--~~tviivtH~~~~~ 217 (260)
T 2ghi_A 193 LFQKAVEDLRK--NRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHHHHHTT--TSEEEEECSSGGGS
T ss_pred HHHHHHHHhcC--CCEEEEEcCCHHHH
Confidence 99999998853 68999999998765
No 50
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.84 E-value=4.7e-22 Score=174.03 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=96.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------c--CCChhHHHHHHHhc--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------D--TFRAAAYEQLLILG-------- 150 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d--~~~~~~~~ql~~~~-------- 150 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|. + .+.....+.+....
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~ 101 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYR 101 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHH
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHH
Confidence 5789999999999999999999999999999999999999999988652 1 11122223322110
Q ss_pred ---ccCCC-------Ce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH-HHHHHHh
Q psy2881 151 ---KYNDV-------PV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL-KKIKKVI 210 (302)
Q Consensus 151 ---~~~~~-------~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L-~~l~~~~ 210 (302)
+..++ +. . .........+..+-+||||++.+|+++|+|||+ |+.+...+++.+ .++. .
T Consensus 102 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~ 179 (229)
T 2pze_A 102 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A 179 (229)
T ss_dssp HHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--T
T ss_pred HHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--C
Confidence 01111 00 0 001223445566667999999999999999998 988888888763 4543 2
Q ss_pred chhhccccceeeh
Q psy2881 211 EKKIFELPYEIFL 223 (302)
Q Consensus 211 ~~~i~~~~hd~~l 223 (302)
+.+++++|||...
T Consensus 180 ~~tvi~vtH~~~~ 192 (229)
T 2pze_A 180 NKTRILVTSKMEH 192 (229)
T ss_dssp TSEEEEECCCHHH
T ss_pred CCEEEEEcCChHH
Confidence 6789999998654
No 51
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.84 E-value=8.3e-22 Score=173.35 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=97.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------cC--CChhHHHHHHHhcc-------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------DT--FRAAAYEQLLILGK------- 151 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d~--~~~~~~~ql~~~~~------- 151 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|. +. +.....+.+.....
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~ 98 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYR 98 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHH
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHH
Confidence 4789999999999999999999999999999999999999999988652 11 11222233322110
Q ss_pred ----cCCC-------C-----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHH---HHHH
Q psy2881 152 ----YNDV-------P-----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELK---KIKK 208 (302)
Q Consensus 152 ----~~~~-------~-----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~---~l~~ 208 (302)
..++ + ... ........+..+-+||||++.+|+++|+|||+ |+.+...+++.|. ++.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~- 177 (237)
T 2cbz_A 99 SVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML- 177 (237)
T ss_dssp HHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-
T ss_pred HHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-
Confidence 0000 0 000 11123345566667999999999999999998 9888888888884 332
Q ss_pred Hhchhhccccceeehh
Q psy2881 209 VIEKKIFELPYEIFLI 224 (302)
Q Consensus 209 ~~~~~i~~~~hd~~lv 224 (302)
.+.+++++|||...+
T Consensus 178 -~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 178 -KNKTRILVTHSMSYL 192 (237)
T ss_dssp -TTSEEEEECSCSTTG
T ss_pred -CCCEEEEEecChHHH
Confidence 378999999997764
No 52
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.82 E-value=3.7e-21 Score=180.35 Aligned_cols=136 Identities=10% Similarity=0.130 Sum_probs=99.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~---------- 153 (302)
++++++||++++|++++|+||||||||||+++|+|+++ ++|+|.+.|.++......+ ++.+..|..
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~en 113 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN 113 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHH
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHH
Confidence 57899999999999999999999999999999999998 8899999998875433221 111111111
Q ss_pred -------------------CCCeeecCC-------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881 154 -------------------DVPVISEKK-------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH 198 (302)
Q Consensus 154 -------------------~~~~~~~~~-------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~ 198 (302)
++.-+.... ...-.+..+-+||||++.+|+++|+|||+ |+..+..
T Consensus 114 l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~ 193 (390)
T 3gd7_A 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193 (390)
T ss_dssp HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHH
T ss_pred hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 110000000 02334445556999999999999999997 9999999
Q ss_pred HHHHHHHHHHHhchhhccccceeehhh
Q psy2881 199 LMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 199 l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
+++.|+++. .+.++++++||...+.
T Consensus 194 l~~~l~~~~--~~~tvi~vtHd~e~~~ 218 (390)
T 3gd7_A 194 IRRTLKQAF--ADCTVILCEARIEAML 218 (390)
T ss_dssp HHHHHHTTT--TTSCEEEECSSSGGGT
T ss_pred HHHHHHHHh--CCCEEEEEEcCHHHHH
Confidence 999988764 3678999999976443
No 53
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.81 E-value=2.7e-20 Score=183.62 Aligned_cols=136 Identities=14% Similarity=0.204 Sum_probs=99.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~--------- 154 (302)
++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .++.+..|...
T Consensus 357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 436 (582)
T 3b5x_A 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN 436 (582)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHH
Confidence 478999999999999999999999999999999999999999999999876422111 01111111100
Q ss_pred CCeee-----------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 155 VPVIS-----------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 155 ~~~~~-----------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
+.+.. ........+..+-+||||++++|+++|+|||+ |+.+.
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~ 516 (582)
T 3b5x_A 437 IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE 516 (582)
T ss_pred HhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 00000 00011122333345999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
..+.+.|.++.+ ++|+++++|+...+
T Consensus 517 ~~i~~~l~~~~~--~~tvi~itH~~~~~ 542 (582)
T 3b5x_A 517 RAIQAALDELQK--NKTVLVIAHRLSTI 542 (582)
T ss_pred HHHHHHHHHHcC--CCEEEEEecCHHHH
Confidence 999999998853 78999999986654
No 54
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=1.6e-20 Score=185.76 Aligned_cols=137 Identities=19% Similarity=0.211 Sum_probs=101.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV-------- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~-------- 155 (302)
++++|+||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .++.+..|...+
T Consensus 369 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 448 (598)
T 3qf4_B 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKEN 448 (598)
T ss_dssp CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHH
T ss_pred ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHH
Confidence 478999999999999999999999999999999999999999999999876432211 111111111100
Q ss_pred -----C------------------eeecC------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 156 -----P------------------VISEK------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 156 -----~------------------~~~~~------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
+ +.... ....-.+..+-+||||++++|+++|+|||+ |+.+..
T Consensus 449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~ 528 (598)
T 3qf4_B 449 LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEK 528 (598)
T ss_dssp HHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence 0 00000 011223344445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
.+.+.|.++. .++|+++++|+...+.
T Consensus 529 ~i~~~l~~~~--~~~t~i~itH~l~~~~ 554 (598)
T 3qf4_B 529 SIQAAMWKLM--EGKTSIIIAHRLNTIK 554 (598)
T ss_dssp HHHHHHHHHH--TTSEEEEESCCTTHHH
T ss_pred HHHHHHHHHc--CCCEEEEEecCHHHHH
Confidence 9999999885 3789999999876543
No 55
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.81 E-value=2.7e-20 Score=183.63 Aligned_cols=137 Identities=15% Similarity=0.200 Sum_probs=100.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~--------- 154 (302)
++++++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+......+ ++.+..|...
T Consensus 357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 436 (582)
T 3b60_A 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 436 (582)
T ss_dssp CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHH
Confidence 4788999999999999999999999999999999999999999999998764322111 1111111110
Q ss_pred ----------------------CC-ee------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881 155 ----------------------VP-VI------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ 196 (302)
Q Consensus 155 ----------------------~~-~~------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~ 196 (302)
+. +. .........+..+-+||||++++|+++|+|||+ |+.+.
T Consensus 437 i~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~ 516 (582)
T 3b60_A 437 IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516 (582)
T ss_dssp HHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHH
Confidence 00 00 000111223334445999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 197 SHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
..+.+.|+++.+ ++|+++++|+...+.
T Consensus 517 ~~i~~~l~~~~~--~~tvi~itH~~~~~~ 543 (582)
T 3b60_A 517 RAIQAALDELQK--NRTSLVIAHRLSTIE 543 (582)
T ss_dssp HHHHHHHHHHHT--TSEEEEECSCGGGTT
T ss_pred HHHHHHHHHHhC--CCEEEEEeccHHHHH
Confidence 999999998853 789999999877543
No 56
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=1.3e-20 Score=185.90 Aligned_cols=137 Identities=13% Similarity=0.120 Sum_probs=101.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC--------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV-------- 155 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~-------- 155 (302)
++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .++.+..|...+
T Consensus 357 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 436 (587)
T 3qf4_A 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKEN 436 (587)
T ss_dssp CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHH
Confidence 477899999999999999999999999999999999999999999999886432211 111111111100
Q ss_pred ---------------------------------Ceee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 156 ---------------------------------PVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 156 ---------------------------------~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.-.. ......-.+..+-+||||++++|+++|+|||+ |+.+..
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~ 516 (587)
T 3qf4_A 437 LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEK 516 (587)
T ss_dssp HTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHH
T ss_pred HhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 0000 00112233444455999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
.+++.|+++. .++|+++++|+...+.
T Consensus 517 ~i~~~l~~~~--~~~tvi~itH~l~~~~ 542 (587)
T 3qf4_A 517 RILDGLKRYT--KGCTTFIITQKIPTAL 542 (587)
T ss_dssp HHHHHHHHHS--TTCEEEEEESCHHHHT
T ss_pred HHHHHHHHhC--CCCEEEEEecChHHHH
Confidence 9999998874 3789999999876654
No 57
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.81 E-value=6.6e-21 Score=172.29 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=97.3
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------c--CCChhHHHHHHH---------
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------D--TFRAAAYEQLLI--------- 148 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d--~~~~~~~~ql~~--------- 148 (302)
+++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|. + .+.....+.+..
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 130 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYR 130 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHH
Confidence 56899999999999999999999999999999999999999999987652 1 112223333320
Q ss_pred -hcccCCCCe-ee------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH-HHHHHHh
Q psy2881 149 -LGKYNDVPV-IS------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL-KKIKKVI 210 (302)
Q Consensus 149 -~~~~~~~~~-~~------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L-~~l~~~~ 210 (302)
..+..++.- .. ........+..+-+||||++.+|+++|+|||+ |+.+...+++.+ .++. .
T Consensus 131 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~ 208 (290)
T 2bbs_A 131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A 208 (290)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--T
T ss_pred HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--C
Confidence 000111100 00 01223445566667999999999999999998 988888888764 4443 2
Q ss_pred chhhccccceeehh
Q psy2881 211 EKKIFELPYEIFLI 224 (302)
Q Consensus 211 ~~~i~~~~hd~~lv 224 (302)
+.++++++||...+
T Consensus 209 ~~tviivtHd~~~~ 222 (290)
T 2bbs_A 209 NKTRILVTSKMEHL 222 (290)
T ss_dssp TSEEEEECCCHHHH
T ss_pred CCEEEEEecCHHHH
Confidence 77999999986654
No 58
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.80 E-value=1.5e-20 Score=185.35 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=100.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~--------- 154 (302)
++++++||++++|++++|+|||||||||++++|+|+++|++|+|.++|.|+......+ ++.+..|...
T Consensus 355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 434 (578)
T 4a82_A 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKEN 434 (578)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHH
Confidence 4688999999999999999999999999999999999999999999998764322111 1111111100
Q ss_pred ---------------------C-------C------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 ---------------------V-------P------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 ---------------------~-------~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
. | .-.......-.+..+-+||||++++|+++|+|||+ |+.+..
T Consensus 435 i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~ 514 (578)
T 4a82_A 435 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESES 514 (578)
T ss_dssp HGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 0 0 00000112233444455999999999999999998 999988
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+.+.+.++.+ ++|+++++|+...+..
T Consensus 515 ~i~~~l~~~~~--~~t~i~itH~l~~~~~ 541 (578)
T 4a82_A 515 IIQEALDVLSK--DRTTLIVAHRLSTITH 541 (578)
T ss_dssp HHHHHHHHHTT--TSEEEEECSSGGGTTT
T ss_pred HHHHHHHHHcC--CCEEEEEecCHHHHHc
Confidence 99998888753 6789999999876543
No 59
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.80 E-value=3.3e-20 Score=183.48 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=100.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~---------- 153 (302)
++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.|+......+ ++.+..|..
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 437 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAEN 437 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHH
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHH
Confidence 4788999999999999999999999999999999999999999999998764322110 111111110
Q ss_pred -----------------------CC-------C--e--e--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881 154 -----------------------DV-------P--V--I--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS 194 (302)
Q Consensus 154 -----------------------~~-------~--~--~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~ 194 (302)
++ | + . .........+..+-+||||++++|+++|+|||+ |+.
T Consensus 438 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~ 517 (595)
T 2yl4_A 438 IAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAE 517 (595)
T ss_dssp HHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHH
T ss_pred HhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHH
Confidence 00 0 0 0 000112233444445999999999999999998 999
Q ss_pred chHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 195 TQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
+...+++.|.++.+ ++|+++++|+...+
T Consensus 518 ~~~~i~~~l~~~~~--~~tvi~itH~~~~~ 545 (595)
T 2yl4_A 518 NEYLVQEALDRLMD--GRTVLVIAHRLSTI 545 (595)
T ss_dssp HHHHHHHHHHHHHT--TSEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHhc--CCEEEEEecCHHHH
Confidence 99999999998865 68999999986543
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.79 E-value=7.4e-20 Score=178.49 Aligned_cols=135 Identities=16% Similarity=0.106 Sum_probs=98.5
Q ss_pred cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-------C---ChhHHHHHHHhc-----------
Q psy2881 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-------F---RAAAYEQLLILG----------- 150 (302)
Q Consensus 92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-------~---~~~~~~ql~~~~----------- 150 (302)
.+|++++|++++|+||||||||||+++|+|+++|++|+|.+.+..+ . .....+.+....
T Consensus 287 ~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 366 (538)
T 3ozx_A 287 DNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFF 366 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHH
T ss_pred ccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHH
Confidence 3456789999999999999999999999999999999998765432 1 112223222211
Q ss_pred ----ccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 151 ----KYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 151 ----~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
+..++.-.. ......-.+..+-+||+|++.+|++||+|||+ |+.++..+++.|+++++..+.+++++|||+
T Consensus 367 ~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 367 EEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp HHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 111111000 00112234555667999999999999999998 999999999999999887788999999998
Q ss_pred ehhhc
Q psy2881 222 FLIID 226 (302)
Q Consensus 222 ~lvl~ 226 (302)
.++..
T Consensus 447 ~~~~~ 451 (538)
T 3ozx_A 447 SIHDY 451 (538)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87665
No 61
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.77 E-value=3.8e-20 Score=154.51 Aligned_cols=131 Identities=6% Similarity=0.021 Sum_probs=88.6
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHH------------HHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCee
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIG------------KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~------------~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~ 158 (302)
++||++++|++++|+||||||||||++ .+.|++.++.|.+.+.+.... ............+....
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~ 77 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFD---VLHYIVSKRLQLGKLTV 77 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHH---HHHHHHHHHHHTTCCEE
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHH---HHHHHHHHHHhCCCeEE
Confidence 579999999999999999999999999 777887777665443321100 00000001112233222
Q ss_pred ecCCCCC-HHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc----------------chHHHHHHHHHHHHHhchhhcccc
Q psy2881 159 SEKKITD-PAAIAFNAINIAQKKNTDIVIVDTSG---RLS----------------TQSHLMRELKKIKKVIEKKIFELP 218 (302)
Q Consensus 159 ~~~~~~~-~~~~~~~~la~al~~~~~llllDEP~---d~~----------------~~~~l~~~L~~l~~~~~~~i~~~~ 218 (302)
....... ..+..+-+||++++.+|+++++|||+ |+. ....+++.++++.+. |.++++++
T Consensus 78 ~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vt 156 (171)
T 4gp7_A 78 VDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYIL 156 (171)
T ss_dssp EESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEE
T ss_pred EECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEe
Confidence 2222222 23344556999999999999999997 666 447778888888766 89999999
Q ss_pred ceeehhh
Q psy2881 219 YEIFLII 225 (302)
Q Consensus 219 hd~~lvl 225 (302)
||+..+.
T Consensus 157 H~~~~~~ 163 (171)
T 4gp7_A 157 NSPEEVE 163 (171)
T ss_dssp CSHHHHH
T ss_pred CCHHHhh
Confidence 9987654
No 62
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.75 E-value=3.6e-19 Score=173.79 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=94.0
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE---------EEecccCCCh------------------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV---------LLAACDTFRA------------------ 140 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V---------~l~~~d~~~~------------------ 140 (302)
+++++| ++.+|++++|+||||||||||+++|+|+++|++|++ .+.|.+....
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~ 115 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV 115 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence 578888 899999999999999999999999999999999984 1222211000
Q ss_pred ---------hHHHHHH---------HhcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 141 ---------AAYEQLL---------ILGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 141 ---------~~~~ql~---------~~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
...+.+. .+.+.+++.... ......-.+..+-+||+|++.+|++||+|||+ |+....
T Consensus 116 ~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~ 195 (538)
T 1yqt_A 116 DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL 195 (538)
T ss_dssp GGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred hhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 0000000 000001111000 00011223344445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+++.|+++.+ .+.++++++||+.++..
T Consensus 196 ~l~~~L~~l~~-~g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 196 NAARAIRRLSE-EGKSVLVVEHDLAVLDY 223 (538)
T ss_dssp HHHHHHHHHHH-TTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence 99999999976 48899999999887654
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.1e-18 Score=172.13 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=99.2
Q ss_pred cCCCcceecCCC-----eEEEEEcCCCCCHHHHHHHHHhHhhhCCCe------EEEecccCC---ChhHHHHHHH-h---
Q psy2881 88 LEKPLIFKKCKP-----FVIMIVGVNGVGKTTTIGKLANYFKKRKKS------VLLAACDTF---RAAAYEQLLI-L--- 149 (302)
Q Consensus 88 ~l~~i~l~~~~g-----~ii~lvGpnGsGKTTll~~Lag~~~~~~g~------V~l~~~d~~---~~~~~~ql~~-~--- 149 (302)
++++++|++.+| ++++|+||||||||||+++|+|+++|++|+ |.+..++.. .....+.+.. +
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~ 441 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSST
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcc
Confidence 466889988887 789999999999999999999999999885 444444321 1112222111 0
Q ss_pred ----------cccCCCCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhh
Q psy2881 150 ----------GKYNDVPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKI 214 (302)
Q Consensus 150 ----------~~~~~~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i 214 (302)
.+.+++.-. .......-.+..+-+||+|++.+|++||+|||+ |+.+...+++.|+++.+..+.++
T Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tv 521 (608)
T 3j16_B 442 FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521 (608)
T ss_dssp TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 011111100 011122334555667999999999999999998 99999999999999987778999
Q ss_pred ccccceeehhhc
Q psy2881 215 FELPYEIFLIID 226 (302)
Q Consensus 215 ~~~~hd~~lvl~ 226 (302)
+++|||+.++..
T Consensus 522 iivtHdl~~~~~ 533 (608)
T 3j16_B 522 FIVEHDFIMATY 533 (608)
T ss_dssp EEECSCHHHHHH
T ss_pred EEEeCCHHHHHH
Confidence 999999887654
No 64
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.75 E-value=3.1e-19 Score=176.35 Aligned_cols=135 Identities=21% Similarity=0.166 Sum_probs=95.1
Q ss_pred cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE------ecccCC---ChhHHHHHHH--------------
Q psy2881 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL------AACDTF---RAAAYEQLLI-------------- 148 (302)
Q Consensus 92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l------~~~d~~---~~~~~~ql~~-------------- 148 (302)
++|++.+|++++|+||||||||||+++|+|+++|++|+|.+ ..++.. .....+.+..
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 454 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE 454 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence 34446899999999999999999999999999999998753 223221 1112221111
Q ss_pred hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 149 LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 149 ~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
+.+.+++.-.. ......-.+..+-+||+|++++|+++|+|||+ |+.++..+++.|+++.+..+.++++++||..+
T Consensus 455 ~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~ 534 (607)
T 3bk7_A 455 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 534 (607)
T ss_dssp THHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 11112221100 01112334555667999999999999999998 99999999999999987678899999999876
Q ss_pred hhc
Q psy2881 224 IID 226 (302)
Q Consensus 224 vl~ 226 (302)
+..
T Consensus 535 ~~~ 537 (607)
T 3bk7_A 535 IDY 537 (607)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 65
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.75 E-value=2.2e-18 Score=168.26 Aligned_cols=135 Identities=21% Similarity=0.171 Sum_probs=96.0
Q ss_pred cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE------ecccCC---ChhHHHHHH--------------H
Q psy2881 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL------AACDTF---RAAAYEQLL--------------I 148 (302)
Q Consensus 92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l------~~~d~~---~~~~~~ql~--------------~ 148 (302)
++|++.+|++++|+||||||||||+++|+|+++|++|+|.+ ..++.. .....+.+. .
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 384 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE 384 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHH
T ss_pred CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence 34456899999999999999999999999999999988743 333321 111122111 1
Q ss_pred hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 149 LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 149 ~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
+.+.+++.-.. ......-.+..+-+||++++.+|++||+|||+ |..+...+++.|+++.+..+.+++++|||..+
T Consensus 385 ~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~ 464 (538)
T 1yqt_A 385 LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 464 (538)
T ss_dssp TTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 12222222100 01112334556667999999999999999998 99999999999999987668899999999877
Q ss_pred hhc
Q psy2881 224 IID 226 (302)
Q Consensus 224 vl~ 226 (302)
+..
T Consensus 465 ~~~ 467 (538)
T 1yqt_A 465 IDY 467 (538)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 66
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=1.3e-18 Score=185.57 Aligned_cols=136 Identities=14% Similarity=0.200 Sum_probs=99.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~---------- 153 (302)
++++|+||++++|+.++|||||||||||+++.|.+++.|++|+|.++|.|+....... ++.+..|..
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1172 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN 1172 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHH
Confidence 4789999999999999999999999999999999999999999999999975433211 111111110
Q ss_pred ----------------------C-----------CCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 154 ----------------------D-----------VPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 154 ----------------------~-----------~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
+ ..... ......-.++.+-+||||++++|++||||||| |+.+
T Consensus 1173 I~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1173 IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp HSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred HhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence 0 00000 00112223334445999999999999999998 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
...+.+.|++.. .++|+++++|.+..+
T Consensus 1253 E~~Iq~~l~~~~--~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1253 EKVVQEALDRAR--EGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp HHHHHHHHTTTS--SSSEEEEECSSSSTT
T ss_pred HHHHHHHHHHHc--CCCEEEEeccCHHHH
Confidence 998888887764 378999999955433
No 67
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.73 E-value=6.8e-19 Score=173.88 Aligned_cols=137 Identities=16% Similarity=0.128 Sum_probs=93.3
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE---------EEecccCCChh-----------------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV---------LLAACDTFRAA----------------- 141 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V---------~l~~~d~~~~~----------------- 141 (302)
+++++| ++++|++++|+||||||||||+++|+|+++|++|++ .+.|.+.....
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~ 185 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV 185 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCG
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechh
Confidence 678888 899999999999999999999999999999999984 12232211000
Q ss_pred ----------HHHHHH---------HhcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 142 ----------AYEQLL---------ILGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 142 ----------~~~ql~---------~~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
..+.+. .+.+.+++.-... .....-.+..+-+||+|++.+|++||+|||+ |+....
T Consensus 186 ~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~ 265 (607)
T 3bk7_A 186 DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL 265 (607)
T ss_dssp GGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred hhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 000000 0000001100000 0011223333445999999999999999998 999999
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+++.|+++.+. +.++++++||+.++..
T Consensus 266 ~l~~~L~~l~~~-g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 266 KVARVIRRLANE-GKAVLVVEHDLAVLDY 293 (607)
T ss_dssp HHHHHHHHHHHT-TCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHhc-CCEEEEEecChHHHHh
Confidence 999999999764 8899999999876544
No 68
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.73 E-value=3.7e-18 Score=170.98 Aligned_cols=137 Identities=11% Similarity=0.130 Sum_probs=85.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHH---------------------HHHHhHhhhC-------CCeEEEecccCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTI---------------------GKLANYFKKR-------KKSVLLAACDTF 138 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll---------------------~~Lag~~~~~-------~g~V~l~~~d~~ 138 (302)
.+++++||++++|++++|+||||||||||+ +.++++..|+ .+.|.+.+.+..
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 479999999999999999999999999998 8888888887 455666554432
Q ss_pred C-----hhHHHH----HHHhcc-------------------cCCCCee--------------------------------
Q psy2881 139 R-----AAAYEQ----LLILGK-------------------YNDVPVI-------------------------------- 158 (302)
Q Consensus 139 ~-----~~~~~q----l~~~~~-------------------~~~~~~~-------------------------------- 158 (302)
. .+.+.| +..+.. ..++.+.
T Consensus 112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL 191 (670)
T 3ux8_A 112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL 191 (670)
T ss_dssp ---CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTC
T ss_pred ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 111000 000000 0000000
Q ss_pred ------ecCCCCCHHHHHHHHHHHHHhCCCC--eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 159 ------SEKKITDPAAIAFNAINIAQKKNTD--IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 159 ------~~~~~~~~~~~~~~~la~al~~~~~--llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.......-.+..+-+||||++.+|+ +||+|||+ |+.....+++.|+++.+. +.++++++||+.++
T Consensus 192 ~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~ 267 (670)
T 3ux8_A 192 DYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDEDTM 267 (670)
T ss_dssp TTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCHHHH
T ss_pred chhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHH
Confidence 0000011223344459999999998 99999998 999999999999999754 88999999997653
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.73 E-value=1.9e-18 Score=183.71 Aligned_cols=138 Identities=18% Similarity=0.197 Sum_probs=101.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~--------- 154 (302)
++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+....... ++.++.|...
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 1126 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHH
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHH
Confidence 4789999999999999999999999999999999999999999999998875432210 0111111100
Q ss_pred ------------------------------CC------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881 155 ------------------------------VP------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST 195 (302)
Q Consensus 155 ------------------------------~~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~ 195 (302)
.| +-.......-.+..+-+||||++++|+++|+|||| |+.+
T Consensus 1127 i~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A 1127 IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206 (1284)
T ss_dssp HTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHH
T ss_pred HhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 00 00000111223344445999999999999999998 9999
Q ss_pred hHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 196 QSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
...+.+.|++.. .++|+++++||+..+..
T Consensus 1207 ~~~i~~~l~~~~--~~~tvi~isH~l~~i~~ 1235 (1284)
T 3g5u_A 1207 EKVVQEALDKAR--EGRTCIVIAHRLSTIQN 1235 (1284)
T ss_dssp HHHHHHHHHHHS--SSSCEEEECSCTTGGGS
T ss_pred HHHHHHHHHHhC--CCCEEEEEecCHHHHHc
Confidence 888988887753 37899999999887654
No 70
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.73 E-value=2e-18 Score=183.53 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=100.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND--------- 154 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~--------- 154 (302)
++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .++.+..|...
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 483 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHH
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHH
Confidence 478999999999999999999999999999999999999999999999875322111 01111111100
Q ss_pred ----------------------------CC------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 155 ----------------------------VP------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 155 ----------------------------~~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
.| +-.......-.++.+-+||||++++|+++|+|||+ |+.+..
T Consensus 484 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~ 563 (1284)
T 3g5u_A 484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563 (1284)
T ss_dssp HHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 00 00001112334445556999999999999999998 988888
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+.+.+..+. .++|+++++|++..+..
T Consensus 564 ~i~~~l~~~~--~~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 564 VVQAALDKAR--EGRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp HHHHHHHHHH--TTSEEEEECSCHHHHTT
T ss_pred HHHHHHHHHc--CCCEEEEEecCHHHHHc
Confidence 8888887764 37899999998776544
No 71
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=5.9e-18 Score=180.43 Aligned_cols=138 Identities=16% Similarity=0.204 Sum_probs=101.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN---------- 153 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~---------- 153 (302)
++++|+||++++|+.++||||+||||||+++.|.|++.|++|+|.++|.|+...... .++.+..|..
T Consensus 432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eN 511 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEEN 511 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHH
Confidence 568899999999999999999999999999999999999999999999876432211 1111111110
Q ss_pred ---------------------------------CCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 154 ---------------------------------DVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 154 ---------------------------------~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
...+-.......-.++.+-+||||+.++|+++|||||+ |.++..
T Consensus 512 I~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~ 591 (1321)
T 4f4c_A 512 ISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEG 591 (1321)
T ss_dssp HHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHH
T ss_pred HhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHH
Confidence 00000111122334455556999999999999999998 999988
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+.+.|.++.+ ++|+++++|....+..
T Consensus 592 ~i~~~l~~~~~--~~T~iiiaHrls~i~~ 618 (1321)
T 4f4c_A 592 IVQQALDKAAK--GRTTIIIAHRLSTIRN 618 (1321)
T ss_dssp HHHHHHHHHHT--TSEEEEECSCTTTTTT
T ss_pred HHHHHHHHHhC--CCEEEEEcccHHHHHh
Confidence 89999988753 7899999996654433
No 72
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.1e-18 Score=172.16 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=87.0
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-----------EecccCCChhH---------------------
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-----------LAACDTFRAAA--------------------- 142 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-----------l~~~d~~~~~~--------------------- 142 (302)
.+.+|++++|+||||||||||+++|+|+++|++|+|. +.|.+.+....
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 4678999999999999999999999999999999872 11111100000
Q ss_pred ---------H-----------HHHHHhcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881 143 ---------Y-----------EQLLILGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS 197 (302)
Q Consensus 143 ---------~-----------~ql~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~ 197 (302)
. +....+.+.+++..... .......+..+-+||+|++.+|+++|+|||+ |+....
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~ 258 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRL 258 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHH
Confidence 0 00000000111110000 0111222333344999999999999999998 898889
Q ss_pred HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 198 HLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.+++.|+++.+. +.++++++||+..+..
T Consensus 259 ~l~~~l~~l~~~-g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 259 NAAQIIRSLLAP-TKYVICVEHDLSVLDY 286 (608)
T ss_dssp HHHHHHHGGGTT-TCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHhC-CCEEEEEeCCHHHHHH
Confidence 999999998754 7899999999876654
No 73
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.71 E-value=2.2e-18 Score=168.12 Aligned_cols=129 Identities=14% Similarity=0.196 Sum_probs=86.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE-----------EEecccCCChhH----------------------
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV-----------LLAACDTFRAAA---------------------- 142 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V-----------~l~~~d~~~~~~---------------------- 142 (302)
.++|++++|+||||||||||+++|+|+++|+.|+| .+.+.+......
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 36899999999999999999999999999999988 333333210000
Q ss_pred -----HHHH---------HHhcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881 143 -----YEQL---------LILGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL 203 (302)
Q Consensus 143 -----~~ql---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L 203 (302)
.+.+ ..+.+.+++.... ......-.+..+-+||+|++.+|+++|+|||+ |+.....+++.|
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l 181 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI 181 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0000 0000001110000 00011222333445999999999999999998 999999999999
Q ss_pred HHHHHHhchhhccccceeehhhc
Q psy2881 204 KKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 204 ~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
+++.+ +.++++++||+..+..
T Consensus 182 ~~l~~--g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 182 RELLK--NKYVIVVDHDLIVLDY 202 (538)
T ss_dssp HHHCT--TSEEEEECSCHHHHHH
T ss_pred HHHhC--CCEEEEEEeChHHHHh
Confidence 99864 7899999999876654
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.70 E-value=4e-18 Score=174.74 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=45.1
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA 134 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~ 134 (302)
++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 367889999999999999999999999999999999999999999864
No 75
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.66 E-value=4.5e-17 Score=145.06 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=80.9
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCCCeeec-CCCCC
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE-KKITD 165 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~-~~~~~ 165 (302)
++++++ +.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++... .+. ...++.+ ..+.+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~---------~~~-~~~~v~q~~~gl~ 83 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV---------FKH-KKSIVNQREVGED 83 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---------CCC-SSSEEEEEEBTTT
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee---------cCC-cceeeeHHHhCCC
Confidence 455666 7899999999999999999999999999997 99999998765311 000 0111111 00000
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 166 PAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 166 ~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
. .....+|++++..+|+++++|||+|+.+.. ..++. . ..|.++++++|+..
T Consensus 84 ~-~~l~~~la~aL~~~p~illlDEp~D~~~~~---~~l~~-~-~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 84 T-KSFADALRAALREDPDVIFVGEMRDLETVE---TALRA-A-ETGHLVFGTLHTNT 134 (261)
T ss_dssp B-SCHHHHHHHHHHHCCSEEEESCCCSHHHHH---HHHHH-H-HTTCEEEEEECCSS
T ss_pred H-HHHHHHHHHHHhhCCCEEEeCCCCCHHHHH---HHHHH-H-ccCCEEEEEeCcch
Confidence 0 012456899999999999999999765533 33333 2 24778889999865
No 76
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.65 E-value=2.1e-18 Score=148.71 Aligned_cols=123 Identities=18% Similarity=0.106 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--ccCCChhHHHHHHHhcccC--CC-Ce----eec--C-CCC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--CDTFRAAAYEQLLILGKYN--DV-PV----ISE--K-KIT 164 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--~d~~~~~~~~ql~~~~~~~--~~-~~----~~~--~-~~~ 164 (302)
++|++++|+||||||||||+++|+|+ +|++|+|.... .+.... ...+.++.+.. ++ .+ ... . ...
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~--~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~ 96 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEA--GEKLGFLPGTLNEKIDPYLRPLHDALRDMVEP 96 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCT--TCCCCSSCC------CTTTHHHHHHHTTTSCT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhh--hcceEEecCCHHHHHHHHHHHHHHHHHHhccH
Confidence 67999999999999999999999999 99999985421 110000 00011111100 01 00 000 0 001
Q ss_pred CHHHHHHH---------HHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 165 DPAAIAFN---------AINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 165 ~~~~~~~~---------~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
.......+ +||+|++.+|++||+|||+.. +...+++.|+++ + .+.+++ +|||...+-.
T Consensus 97 ~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 97 EVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRL-G-FGSKMV-VTGDITQVDL 163 (208)
T ss_dssp THHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTB-C-TTCEEE-EEEC------
T ss_pred HHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHh-c-CCCEEE-EECCHHHHhC
Confidence 11111111 378999999999999999855 788888888887 3 477888 9999886554
No 77
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.63 E-value=4.1e-16 Score=156.13 Aligned_cols=56 Identities=9% Similarity=0.205 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCC---eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 168 AIAFNAINIAQKKNTD---IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 168 ~~~~~~la~al~~~~~---llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
+..+-+||||++.+|+ +||+|||+ |+.+...+++.|+++.+. +.|+++++||+.++
T Consensus 548 ~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~~ 609 (670)
T 3ux8_A 548 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVI 609 (670)
T ss_dssp HHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHH
Confidence 4444569999998874 99999998 999999999999999764 88999999998754
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.62 E-value=3e-16 Score=160.92 Aligned_cols=136 Identities=15% Similarity=0.088 Sum_probs=92.0
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH-hh----hCCCeEEEecccC----CChhHHHHH-----------
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY-FK----KRKKSVLLAACDT----FRAAAYEQL----------- 146 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~-~~----~~~g~V~l~~~d~----~~~~~~~ql----------- 146 (302)
.+++++||++.+|++++|+||||||||||+++|+|- +. +...++.+..++. ......+.+
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v 528 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAI 528 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHH
T ss_pred EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHH
Confidence 467889999999999999999999999999999952 21 1112344443332 111222222
Q ss_pred HHhcccCCCC--eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccce
Q psy2881 147 LILGKYNDVP--VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYE 220 (302)
Q Consensus 147 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd 220 (302)
..+.+.++++ ... ........+..+-+||+|++.+|++||+|||+ |+.+...+++.|++ .+.+++++|||
T Consensus 529 ~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd 604 (986)
T 2iw3_A 529 KDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD 604 (986)
T ss_dssp HHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC
T ss_pred HHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECC
Confidence 2222233432 100 11123345556667999999999999999998 99988888888876 47899999999
Q ss_pred eehhhc
Q psy2881 221 IFLIID 226 (302)
Q Consensus 221 ~~lvl~ 226 (302)
..++..
T Consensus 605 l~~l~~ 610 (986)
T 2iw3_A 605 SVFLDN 610 (986)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 79
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.62 E-value=1.6e-15 Score=136.84 Aligned_cols=134 Identities=16% Similarity=0.083 Sum_probs=89.2
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEecccCCChhHHHHHHHhccc--------------
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAACDTFRAAAYEQLLILGKY-------------- 152 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~-------------- 152 (302)
.++++++.+++|++++|+||||||||||++.|++.+.+..| +|.+.+.+.........+..+...
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~ 103 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREII 103 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCC
Confidence 46677889999999999999999999999999999999866 898876654211111111100000
Q ss_pred -------------CCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCCC---c-------cchHHHHHHHHHHH
Q psy2881 153 -------------NDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSGR---L-------STQSHLMRELKKIK 207 (302)
Q Consensus 153 -------------~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~d---~-------~~~~~l~~~L~~l~ 207 (302)
...++.... ...........+.++++..+|++||+|||+. . .....+++.|++++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la 183 (296)
T 1cr0_A 104 ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFA 183 (296)
T ss_dssp HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 011221111 1233443333334566889999999999973 2 22346888888888
Q ss_pred HHhchhhcccccee
Q psy2881 208 KVIEKKIFELPYEI 221 (302)
Q Consensus 208 ~~~~~~i~~~~hd~ 221 (302)
+..+.++++++|+.
T Consensus 184 ~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 184 KSTGVVLVVICHLK 197 (296)
T ss_dssp HHHCCEEEEEEECC
T ss_pred HHhCCeEEEEEecC
Confidence 88899999999985
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.61 E-value=8.8e-17 Score=147.88 Aligned_cols=117 Identities=10% Similarity=0.036 Sum_probs=85.7
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHH
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPA 167 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~ 167 (302)
+++++++.+.+|++++|+||||||||||++.|+|+++|++|.|.+.+.+...... +. ..+.++.. .+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~------~~--~~i~~~~g-gg---- 226 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKH------HK--NYTQLFFG-GN---- 226 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSS------CS--SEEEEECB-TT----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccccc------ch--hEEEEEeC-CC----
Confidence 4677899999999999999999999999999999999999999999875332110 11 11222211 11
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 168 AIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 168 ~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
...+.+|++|+..+|+++++|||++. ++++.|+.+.. .+.++++++|+..
T Consensus 227 ~~~r~~la~aL~~~p~ilildE~~~~----e~~~~l~~~~~-g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 227 ITSADCLKSCLRMRPDRIILGELRSS----EAYDFYNVLCS-GHKGTLTTLHAGS 276 (330)
T ss_dssp BCHHHHHHHHTTSCCSEEEECCCCST----HHHHHHHHHHT-TCCCEEEEEECSS
T ss_pred hhHHHHHHHHhhhCCCEEEEcCCChH----HHHHHHHHHhc-CCCEEEEEEcccH
Confidence 23346699999999999999999872 35566666642 2446788999765
No 81
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.57 E-value=6.5e-15 Score=127.06 Aligned_cols=133 Identities=15% Similarity=0.117 Sum_probs=87.7
Q ss_pred CCCcce-ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccC------CCCeeecC
Q psy2881 89 EKPLIF-KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYN------DVPVISEK 161 (302)
Q Consensus 89 l~~i~l-~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~------~~~~~~~~ 161 (302)
++++.. .+++|++++|+|||||||||+++.|++...+.+|+|.+.+.+.........+..++... .+.+....
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDAL 91 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECC
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEecc
Confidence 344444 57899999999999999999999999999888999999887764222222222111100 00111100
Q ss_pred ----------CCCCHHHHHHHHHHHHHhCCCC--eEEEcCCC-----CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 162 ----------KITDPAAIAFNAINIAQKKNTD--IVIVDTSG-----RLSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 162 ----------~~~~~~~~~~~~la~al~~~~~--llllDEP~-----d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
...+.........+.+...+|+ +|++|||+ |+.....+++.|+++++..+.++++++|+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 92 MKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp C----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0113333333333334456899 99999997 666678899999999887788999999986
No 82
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.56 E-value=1e-14 Score=127.57 Aligned_cols=128 Identities=9% Similarity=0.065 Sum_probs=73.5
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHH--hHhhhCCCeEEEecccCCChhHHHHHHHhc---cc----CCCCeeec-----
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLA--NYFKKRKKSVLLAACDTFRAAAYEQLLILG---KY----NDVPVISE----- 160 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~La--g~~~~~~g~V~l~~~d~~~~~~~~ql~~~~---~~----~~~~~~~~----- 160 (302)
.+++|++++|+||||||||||++.|+ +...+.++.+.+.+.+.. ....+....++ +. ..+.+...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA-RDLRREMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCH-HHHHHHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 57899999999999999999999999 554666676666654432 11111111110 00 00001000
Q ss_pred ----------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C----ccc-hHHHHHHHHHHHHHhchhhccccceee
Q psy2881 161 ----------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R----LST-QSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 161 ----------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d----~~~-~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
....+...............+|+++++|||+ | +.. ...+.+.++.+.+ .+.++++++|+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~ 183 (251)
T 2ehv_A 105 GLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPD 183 (251)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC-
T ss_pred ccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCC
Confidence 0011122222222333345899999999997 3 233 3346777777654 5899999999877
Q ss_pred hh
Q psy2881 223 LI 224 (302)
Q Consensus 223 lv 224 (302)
.+
T Consensus 184 ~~ 185 (251)
T 2ehv_A 184 PQ 185 (251)
T ss_dssp --
T ss_pred CC
Confidence 65
No 83
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.55 E-value=1.3e-14 Score=125.35 Aligned_cols=126 Identities=15% Similarity=0.180 Sum_probs=76.5
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-------CCCeEEEecccCCChhHHHHHHHhcccCCCC---------ee
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-------RKKSVLLAACDTFRAAAYEQLLILGKYNDVP---------VI 158 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-------~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~---------~~ 158 (302)
.+++|++++|+||||||||||++.|+|.+.+ .++.+.+.+.+..+.. ++..+.+..++. +.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~ 97 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE---RIREIAQNRGLDPDEVLKHIYVA 97 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH---HHHHHHHHTTSCHHHHHHTEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH---HHHHHHHHcCCCHHHHhhcEEEE
Confidence 4679999999999999999999999997665 3346666666543322 223333333221 11
Q ss_pred ecCCCCCHHHHHHHH---HHHHH--hCCCCeEEEcCCC---Ccc-------c-----hHHHHHHHHHHHHHhchhhcccc
Q psy2881 159 SEKKITDPAAIAFNA---INIAQ--KKNTDIVIVDTSG---RLS-------T-----QSHLMRELKKIKKVIEKKIFELP 218 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~---la~al--~~~~~llllDEP~---d~~-------~-----~~~l~~~L~~l~~~~~~~i~~~~ 218 (302)
............... +.+++ ..+|+++++|||+ |+. . ...++..|.++++..+.++++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vt 177 (231)
T 4a74_A 98 RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 177 (231)
T ss_dssp ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 111110111111111 22222 4689999999998 321 1 12678888888877799999999
Q ss_pred ceeeh
Q psy2881 219 YEIFL 223 (302)
Q Consensus 219 hd~~l 223 (302)
|....
T Consensus 178 H~~~~ 182 (231)
T 4a74_A 178 QVQAN 182 (231)
T ss_dssp ECC--
T ss_pred ecccC
Confidence 96544
No 84
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.54 E-value=9.3e-15 Score=135.55 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=75.0
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCCCeeec-CCCCCHHHHHHH
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE-KKITDPAAIAFN 172 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~-~~~~~~~~~~~~ 172 (302)
...+|++++|+||||||||||++.|+|++.|+ +|.|.....+. ... + .....++.+ ....+ .....+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~-------~--~~~~~~v~q~~~~~~-~~~~~~ 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV-------H--ESKKCLVNQREVHRD-TLGFSE 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC-------C--CCSSSEEEEEEBTTT-BSCHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh-------h--hccccceeeeeeccc-cCCHHH
Confidence 45678899999999999999999999999987 67666554332 111 0 000111111 00001 012234
Q ss_pred HHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 173 AINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 173 ~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
+|++|+.++|++|++|||+|... ++.+.+.+. .|.+++.++|+...+
T Consensus 188 ~La~aL~~~PdvillDEp~d~e~----~~~~~~~~~-~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMRDLET----IRLALTAAE-TGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHHHHTTSCCSEEEESCCCSHHH----HHHHHHHHH-TTCEEEEEESCSSHH
T ss_pred HHHHHhhhCcCEEecCCCCCHHH----HHHHHHHHh-cCCEEEEEEccChHH
Confidence 79999999999999999997433 444444443 477899999987654
No 85
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.54 E-value=3.7e-15 Score=140.61 Aligned_cols=57 Identities=5% Similarity=0.088 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHhCCC--CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 165 DPAAIAFNAINIAQKKNT--DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 165 ~~~~~~~~~la~al~~~~--~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.-.+..+-+||++++.+| ++||+|||+ |+.....+.+.|+++. .+.+++++||+..+
T Consensus 297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~ 358 (415)
T 4aby_A 297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQI 358 (415)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHH
T ss_pred CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHH
Confidence 445555667999999999 999999997 9999999999999986 27889999998754
No 86
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.52 E-value=1.1e-15 Score=144.26 Aligned_cols=123 Identities=9% Similarity=-0.022 Sum_probs=77.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---------------------HHHHHhcccCCC--
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---------------------EQLLILGKYNDV-- 155 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---------------------~ql~~~~~~~~~-- 155 (302)
+.+++|+||||||||||+++|+|+++|++|+|.+.+.++.+.+.. ..+..+.+..++
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 449999999999999999999999999999988776543211000 000111111111
Q ss_pred -CeeecCCCCCHHHHHHHHHHHHHhC----------CCCeEEEcCCC---CccchHHHHHHHHHHHH----Hh----chh
Q psy2881 156 -PVISEKKITDPAAIAFNAINIAQKK----------NTDIVIVDTSG---RLSTQSHLMRELKKIKK----VI----EKK 213 (302)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~la~al~~----------~~~llllDEP~---d~~~~~~l~~~L~~l~~----~~----~~~ 213 (302)
......+... .+..+..+++++.. +|+++++|||+ |+..+..+++.++++.. .. ..+
T Consensus 149 ~~~~~~lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~i 227 (413)
T 1tq4_A 149 YDFFIIISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPI 227 (413)
T ss_dssp CSEEEEEESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCE
T ss_pred cCCeEEeCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 0000011110 01223458888988 99999999997 99999999999999863 22 245
Q ss_pred hccccceee
Q psy2881 214 IFELPYEIF 222 (302)
Q Consensus 214 i~~~~hd~~ 222 (302)
+++++|+..
T Consensus 228 iliSsh~l~ 236 (413)
T 1tq4_A 228 FLLSNKNVC 236 (413)
T ss_dssp EECCTTCTT
T ss_pred EEEecCcCC
Confidence 677888543
No 87
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.1e-15 Score=146.37 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=80.9
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-e-EEEecccCCChhHHHHHH--------------HhcccC-
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-S-VLLAACDTFRAAAYEQLL--------------ILGKYN- 153 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~-V~l~~~d~~~~~~~~ql~--------------~~~~~~- 153 (302)
+++|++.+|++++|+||||||||||+++|+|++.|++| + |.+++......+...|-. .+....
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~ 209 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLT 209 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCB
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccc
Confidence 68999999999999999999999999999999999999 8 988762111111110100 010000
Q ss_pred -C-------CCeeecCCCCC--------HHHHHHHHHHHH--HhCCCCe----EEEcC-CC---CccchHHHHHHHHHHH
Q psy2881 154 -D-------VPVISEKKITD--------PAAIAFNAINIA--QKKNTDI----VIVDT-SG---RLSTQSHLMRELKKIK 207 (302)
Q Consensus 154 -~-------~~~~~~~~~~~--------~~~~~~~~la~a--l~~~~~l----lllDE-P~---d~~~~~~l~~~L~~l~ 207 (302)
+ .+......-.+ ..+..+-++|++ ++.+|++ +|+|| |+ |+. . +.|.++.
T Consensus 210 ~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~----~~l~~l~ 284 (460)
T 2npi_A 210 SGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-L----AELHHII 284 (460)
T ss_dssp SSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-C----HHHHHHH
T ss_pred cCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-H----HHHHHHH
Confidence 0 00000000000 112334458889 9999999 99999 76 665 3 3444544
Q ss_pred HHhchhhccccceee
Q psy2881 208 KVIEKKIFELPYEIF 222 (302)
Q Consensus 208 ~~~~~~i~~~~hd~~ 222 (302)
+..+.++++++|+..
T Consensus 285 ~~~~~tviiVth~~~ 299 (460)
T 2npi_A 285 EKLNVNIMLVLCSET 299 (460)
T ss_dssp HHTTCCEEEEECCSS
T ss_pred HHhCCCEEEEEccCc
Confidence 445778888999755
No 88
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.50 E-value=6.1e-16 Score=131.22 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=68.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeee-------------------
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS------------------- 159 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~------------------- 159 (302)
|++++|+||||||||||+++|+|+++ ++| |.+.|.+.... ..+.+..+..+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~------~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~ 72 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV------RQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGK 72 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE------ETTSSEEEEEEEETTSCEEEEEECCCCCCSSS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh------HhhhceEEEEEEecccceehhhcccccCCccc
Confidence 67899999999999999999999999 888 88877655211 1112221111110
Q ss_pred -----cCCCCCHHH---HHHHHHHH---HHhCCCCeEEEcCCCCcc-chHHHHHHHHHHHHHhchhh---cccccee
Q psy2881 160 -----EKKITDPAA---IAFNAINI---AQKKNTDIVIVDTSGRLS-TQSHLMRELKKIKKVIEKKI---FELPYEI 221 (302)
Q Consensus 160 -----~~~~~~~~~---~~~~~la~---al~~~~~llllDEP~d~~-~~~~l~~~L~~l~~~~~~~i---~~~~hd~ 221 (302)
..+..++.. ....++++ |+..+|+++|+||||... .....++.|.++.+....++ +.++|+.
T Consensus 73 ~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 73 RECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGK 149 (189)
T ss_dssp CCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSS
T ss_pred cccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCC
Confidence 001112322 11122333 457899999999975221 22346777777776433333 2445864
No 89
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.50 E-value=8e-15 Score=148.88 Aligned_cols=51 Identities=10% Similarity=0.266 Sum_probs=44.9
Q ss_pred HHHHHHhCC---CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 173 AINIAQKKN---TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 173 ~la~al~~~---~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.||++++.+ |+++|||||+ |+.....+++.|.++.+. |.++++++||+.++
T Consensus 740 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~i 796 (842)
T 2vf7_A 740 KLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAVEHKMQVV 796 (842)
T ss_dssp HHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH
T ss_pred HHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHH
Confidence 389999986 7999999998 888999999999999754 88999999997765
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.46 E-value=4e-14 Score=137.90 Aligned_cols=135 Identities=13% Similarity=0.050 Sum_probs=89.8
Q ss_pred ccCCCcce-ecCCCeEEEEEcCCCCCHHHHHHH--HHhHhhhCCCeEEEecccCCChhHHHHHHHh---ccc----CCCC
Q psy2881 87 SLEKPLIF-KKCKPFVIMIVGVNGVGKTTTIGK--LANYFKKRKKSVLLAACDTFRAAAYEQLLIL---GKY----NDVP 156 (302)
Q Consensus 87 ~~l~~i~l-~~~~g~ii~lvGpnGsGKTTll~~--Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~---~~~----~~~~ 156 (302)
++++++++ .+++|++++|+||||||||||++. ++|+++|.+|.|.+.+.+.. ....+..+.+ .+. ..+.
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~-~~~~~~~~~~g~~~q~~~~~~~l~ 104 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP-QDIIKNARSFGWDLAKLVDEGKLF 104 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHGGGTCCHHHHHHTTSEE
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH-HHHHHHHHHcCCChHHhhccCcEE
Confidence 46788999 999999999999999999999999 78999999999999988731 1111100000 000 0011
Q ss_pred eeecCC---C----CC--HHHHHHHHHHHHHh-CCCCeEEEcCCC--------CccchHHHHHHHHHHHHHhchhhcccc
Q psy2881 157 VISEKK---I----TD--PAAIAFNAINIAQK-KNTDIVIVDTSG--------RLSTQSHLMRELKKIKKVIEKKIFELP 218 (302)
Q Consensus 157 ~~~~~~---~----~~--~~~~~~~~la~al~-~~~~llllDEP~--------d~~~~~~l~~~L~~l~~~~~~~i~~~~ 218 (302)
...... . .. ... ....+..++. .+|++|++|||+ |+.....+++.++.+++ .+.++++++
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~it 182 (525)
T 1tf7_A 105 ILDASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTT 182 (525)
T ss_dssp EEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEE
T ss_pred EEecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 111000 0 01 111 1222344443 689999999996 33556778888888876 589999999
Q ss_pred ceeehh
Q psy2881 219 YEIFLI 224 (302)
Q Consensus 219 hd~~lv 224 (302)
|+...+
T Consensus 183 H~~~~~ 188 (525)
T 1tf7_A 183 ERIEEY 188 (525)
T ss_dssp ECSSSS
T ss_pred cCCCCc
Confidence 998765
No 91
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.44 E-value=9.7e-13 Score=121.75 Aligned_cols=177 Identities=12% Similarity=0.109 Sum_probs=104.1
Q ss_pred HHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc---cCCCc-ceecCCCeEEEEEcCCCCCHHHH
Q psy2881 40 DLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKS---LEKPL-IFKKCKPFVIMIVGVNGVGKTTT 115 (302)
Q Consensus 40 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---~l~~i-~l~~~~g~ii~lvGpnGsGKTTl 115 (302)
.....|++..-+.++++...+.+......+...+.+.... ...+.. .++.+ .+.+++|++++|+||||||||||
T Consensus 70 L~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 70 LKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRAT--IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQL 147 (349)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHHHHT--CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred HHhhcCCCHHHHHHHHHHHhhhccccCCccHHHHHhhhcc--CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 3345778878888888877766532122333333221100 011111 12232 46788999999999999999999
Q ss_pred HHHHHhHh--hhCC----Ce-EEEecccCCChhHHHHHHHhcccCCCCe--------eecCCCCCHHHHHHHHHHHHHh-
Q psy2881 116 IGKLANYF--KKRK----KS-VLLAACDTFRAAAYEQLLILGKYNDVPV--------ISEKKITDPAAIAFNAINIAQK- 179 (302)
Q Consensus 116 l~~Lag~~--~~~~----g~-V~l~~~d~~~~~~~~ql~~~~~~~~~~~--------~~~~~~~~~~~~~~~~la~al~- 179 (302)
+..+++.. +|+. |+ |++.+.+.++ .+++..+++..++.. +......+...... .++++++
T Consensus 148 ~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~---~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l-~~~~~~~~ 223 (349)
T 1pzn_A 148 AHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLV-QQAEDKIK 223 (349)
T ss_dssp HHHHHHHTTSCGGGTSCSCEEEEEESSSCCC---HHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHhccchhcCCCCCeEEEEeCCCCCC---HHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHH-HHHHHHHH
Confidence 99999998 4544 68 7777766543 234444554443321 11111101111111 1334454
Q ss_pred ------CCCCeEEEcCCC---Cccc------------hHHHHHHHHHHHHHhchhhccccceee
Q psy2881 180 ------KNTDIVIVDTSG---RLST------------QSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 180 ------~~~~llllDEP~---d~~~------------~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
.+|++||+|||+ |+.. ...++..|.++++..+.++++++|...
T Consensus 224 ~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 224 ELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 689999999998 4321 245666677777777889999999643
No 92
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.44 E-value=2.2e-13 Score=139.42 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCC---CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 171 FNAINIAQKKNT---DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 171 ~~~la~al~~~~---~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
+-+||++++++| +++|+|||| |+.....+++.|.++.+. |.|+++++||+..+
T Consensus 813 RV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVIvI~HdL~~i 871 (916)
T 3pih_A 813 RIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIVIEHNLDVI 871 (916)
T ss_dssp HHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH
Confidence 334999998765 799999998 999999999999999754 88999999997654
No 93
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.43 E-value=1.8e-13 Score=139.71 Aligned_cols=51 Identities=10% Similarity=0.248 Sum_probs=44.3
Q ss_pred HHHHHHhCCC---CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 173 AINIAQKKNT---DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 173 ~la~al~~~~---~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.||++++.+| +++|+|||+ |+.....+++.|.++.+ .|.++++++||+.++
T Consensus 855 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i 911 (972)
T 2r6f_A 855 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVI 911 (972)
T ss_dssp HHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH
Confidence 3999999764 999999998 99999999999999975 488999999997653
No 94
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.40 E-value=3e-14 Score=119.60 Aligned_cols=110 Identities=14% Similarity=0.019 Sum_probs=60.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HHHHHHHhccc----------CCCCe--eecCCCCC
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AYEQLLILGKY----------NDVPV--ISEKKITD 165 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~~ql~~~~~~----------~~~~~--~~~~~~~~ 165 (302)
.++|+||||||||||+++|+|++. |.+.|.+..... ....+.+..+. .+... ........
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVN 76 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccC
Confidence 589999999999999999999985 333332221000 00000000000 00000 00000011
Q ss_pred --HHHHHHHHHHHH-----HhCCCCeEEEcC--CC---CccchHHHHHHHHHHHHHhchhhccccc
Q psy2881 166 --PAAIAFNAINIA-----QKKNTDIVIVDT--SG---RLSTQSHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 166 --~~~~~~~~la~a-----l~~~~~llllDE--P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
..+..+-.+++| ++.+|+++|+|| |+ |+.....+.+.+.+ .+.++++++|
T Consensus 77 lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H 138 (178)
T 1ye8_A 77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIP 138 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECC
T ss_pred cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEc
Confidence 233444568886 899999999999 86 65555555555443 3555777776
No 95
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.40 E-value=1.1e-13 Score=141.94 Aligned_cols=132 Identities=12% Similarity=0.004 Sum_probs=76.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITD 165 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~ 165 (302)
.++++++|++++|++++|+|||||||||+++.+++... ...|... .......+..+ .+....+..-........
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~v--pa~~~~i~~~d---~i~~~ig~~d~l~~~~st 735 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYV--PAEEATIGIVD---GIFTRMGAADNIYKGRST 735 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCB--SSSEEEEECCS---EEEEEC----------CC
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccc--cchhhhhhHHH---HHHHhCChHHHHHHhHHH
Confidence 46788999999999999999999999999999987643 1112100 00000000000 000011110000000001
Q ss_pred H--HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH-HHHHHHHHHhchhhccccceeehh
Q psy2881 166 P--AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM-RELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 166 ~--~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~-~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
. .......++++ +.+|++||+|||+ |+.....+. ..+..+.+..+.+++++||+..++
T Consensus 736 fs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 736 FMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp HHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred hhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence 1 11111223333 7899999999997 777777776 566666655688999999997664
No 96
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.40 E-value=3.1e-13 Score=138.41 Aligned_cols=51 Identities=10% Similarity=0.218 Sum_probs=44.4
Q ss_pred HHHHHHhCCC---CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 173 AINIAQKKNT---DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 173 ~la~al~~~~---~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
+||++++.+| +++|||||+ |+.....+++.|.++.+ .|.++++++||+.++
T Consensus 873 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i 929 (993)
T 2ygr_A 873 KLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIVIEHNLDVI 929 (993)
T ss_dssp HHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH
T ss_pred HHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH
Confidence 3999999764 999999998 99999999999999875 488999999997764
No 97
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.40 E-value=1.3e-14 Score=124.33 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=26.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
+++++ .++++|++++|+||||||||||+++|+|+++
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34555 5788999999999999999999999999985
No 98
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.40 E-value=1.9e-13 Score=140.36 Aligned_cols=123 Identities=17% Similarity=0.084 Sum_probs=73.8
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh--------HhhhCCCe-EEEecccCCChhHHHHHHHhcccCCCCee
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN--------YFKKRKKS-VLLAACDTFRAAAYEQLLILGKYNDVPVI 158 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag--------~~~~~~g~-V~l~~~d~~~~~~~~ql~~~~~~~~~~~~ 158 (302)
++++++|++.+|++++|+|||||||||+++.++. .+.|..+. +.+.+. +..+.+..-.
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~-------------i~~~ig~~d~ 717 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDC-------------ILARVGAGDS 717 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSE-------------EEEECC----
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHH-------------HHHhcCchhh
Confidence 4457889999999999999999999999999943 33332211 111100 0011111100
Q ss_pred ecCCCCCHHHHHHHHHHHHH--hCCCCeEEEcCCC---CccchHHH-HHHHHHHHHHhchhhccccceeehh
Q psy2881 159 SEKKITDPAAIAFNAINIAQ--KKNTDIVIVDTSG---RLSTQSHL-MRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~la~al--~~~~~llllDEP~---d~~~~~~l-~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
. ..+......-...+++++ +.+|++||+|||| |+.....+ ...+..+.+..+.+++++||+..+.
T Consensus 718 l-~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 718 Q-LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT 788 (934)
T ss_dssp ------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG
T ss_pred H-HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH
Confidence 0 000111111122245555 7999999999997 77666666 5556666654588999999997654
No 99
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.39 E-value=3.2e-13 Score=125.99 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=73.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCCCeeecC-CCCCHHHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK-KITDPAAIAFNA 173 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 173 (302)
+.+|++++|+||||||||||++.|++++.|+ +|+|.+.+.+.. . .+ ...+.++.+. .+.++ .....+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~-------~~--~~~~~~v~Q~~~g~~~-~~~~~~ 201 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y-------VF--KHKKSIVNQREVGEDT-KSFADA 201 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S-------CC--CCSSSEEEEEEBTTTB-SCSHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h-------hh--ccCceEEEeeecCCCH-HHHHHH
Confidence 6789999999999999999999999999987 899988775432 1 01 1122222220 00000 011346
Q ss_pred HHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 174 INIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 174 la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
+++++..+|++|++|||+|... +...++.. ..|.+++.++|+..
T Consensus 202 l~~~L~~~pd~illdE~~d~e~---~~~~l~~~--~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 202 LRAALREDPDVIFVGEMRDLET---VETALRAA--ETGHLVFGTLHTNT 245 (372)
T ss_dssp HHHHTTSCCSEEEESCCCSHHH---HHHHHHHH--TTTCEEEECCCCCS
T ss_pred HHHHhhhCcCEEEECCCCCHHH---HHHHHHHH--hcCCEEEEEECcch
Confidence 8888999999999999996543 33334332 24667777888643
No 100
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.35 E-value=2.9e-14 Score=123.34 Aligned_cols=45 Identities=27% Similarity=0.259 Sum_probs=32.1
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
.++++||++++|++++|+||||||||||+++|+|++ | |+|.+ +.+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~ 56 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVS 56 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCC
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eec
Confidence 478999999999999999999999999999999998 5 88988 544
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.35 E-value=5.9e-12 Score=107.73 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=74.9
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-CChhHHHHHHHhcccCCCC--------eeecCCCCC
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-FRAAAYEQLLILGKYNDVP--------VISEKKITD 165 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~--------~~~~~~~~~ 165 (302)
.+++|++++|+|||||||||++..+++ +.++.|.+.+.+. ... +++..+.+..+.. .+.......
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSP---ERLVQMAETRGLNPEEALSRFILFTPSDFK 89 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCH---HHHHHHHHTTTCCHHHHHHHEEEECCTTTS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCH---HHHHHHHHhcCCChHHHhhcEEEEecCCHH
Confidence 467999999999999999999999999 4466777766553 222 1222222222221 111111122
Q ss_pred HHHHHHHHHHHHHhCC-CCeEEEcCCC---Cccch--------HHHHHHHHHHHHHhchhhccccceee
Q psy2881 166 PAAIAFNAINIAQKKN-TDIVIVDTSG---RLSTQ--------SHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 166 ~~~~~~~~la~al~~~-~~llllDEP~---d~~~~--------~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
..... -..+++++.+ |++|++|||+ |.... ..+++.|+++++..+.++++++|...
T Consensus 90 ~~~~~-~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 90 EQRRV-IGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHH-HHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHH-HHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 11111 1244567765 9999999997 43221 33556678887777888988988654
No 102
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.34 E-value=2.6e-12 Score=114.85 Aligned_cols=127 Identities=16% Similarity=0.099 Sum_probs=76.1
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC----------CCeEEEecccCCChhHHHHHHHhcc------------c
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR----------KKSVLLAACDTFRAAAYEQLLILGK------------Y 152 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~----------~g~V~l~~~d~~~~~~~~ql~~~~~------------~ 152 (302)
.+++|++++|+||||||||||+..+++.+... .+.|.+....-........+..+.. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 36789999999999999999999999977642 4667665433221111111111111 1
Q ss_pred CCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-----Cccch---HHHHHHHHHHHHHhchhhccccceee
Q psy2881 153 NDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG-----RLSTQ---SHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 153 ~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~-----d~~~~---~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
..+.-... ........ .+ .+++++.+|++|++|||+ |.... ..++..|.++++..+.++++++|+..
T Consensus 106 l~l~~~~~~~~~~ls~g~--~~-~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 106 LLIQPLIGSLPNIMAPEW--FD-GLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp EEECCCTTSCCCTTSHHH--HH-HHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred eEEeecCCCCcccCCHHH--HH-HHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 11100000 00111221 12 345777899999999997 33333 67888888888777999999999876
Q ss_pred hh
Q psy2881 223 LI 224 (302)
Q Consensus 223 lv 224 (302)
..
T Consensus 183 ~~ 184 (279)
T 1nlf_A 183 GA 184 (279)
T ss_dssp --
T ss_pred cc
Confidence 54
No 103
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.33 E-value=1.9e-12 Score=120.53 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHh------CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 167 AAIAFNAINIAQK------KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 167 ~~~~~~~la~al~------~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+..+-+||+|++ .+|+++|+|||+ |+.....+++.|.++.+ .+.++++++||+.+
T Consensus 283 Ge~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~ 347 (365)
T 3qf7_A 283 GERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF 347 (365)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH
Confidence 3344445788887 799999999998 99999999999999864 48899999999765
No 104
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.33 E-value=1.8e-13 Score=142.09 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=82.5
Q ss_pred ccCCCcceecCC-------CeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCCChhHHHHHHHhcccCCCCe
Q psy2881 87 SLEKPLIFKKCK-------PFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157 (302)
Q Consensus 87 ~~l~~i~l~~~~-------g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~ 157 (302)
.++++++|++.+ |++++|+|||||||||+++.+ |++.+ .-|..... +....+..+. +..+.+..-
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq--~~~~l~v~d~---I~~rig~~d 843 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPA--EVCRLTPIDR---VFTRLGASD 843 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEES--SEEEECCCSB---EEEECC---
T ss_pred eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEecc--CcCCCCHHHH---HHHHcCCHH
Confidence 578889999876 899999999999999999999 88764 22311111 1000000000 000111100
Q ss_pred e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch-HHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881 158 I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ-SHLMRELKKIKKVIEKKIFELPYEIFLIIDGN 228 (302)
Q Consensus 158 ~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~-~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~ 228 (302)
. ......-......-+++++++.+|++||+|||| |+... ..++..|..+.+..+.+++++||+..++...+
T Consensus 844 ~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~ 919 (1022)
T 2o8b_B 844 RIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYS 919 (1022)
T ss_dssp ------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTS
T ss_pred HHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhC
Confidence 0 000000011112234778889999999999997 65553 44677888887655889999999988776544
No 105
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.32 E-value=1.8e-12 Score=131.54 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=73.9
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCC-eeecCCCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKIT 164 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~~~~~~ 164 (302)
.++++++|+ ++|++++|+|||||||||+++.|+|+.. ...|... .....+.+...+ .+ ...+.. ........
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v--pa~~~~i~~~~~--i~-~~~~~~d~l~~~~st 669 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV--PAQKVEIGPIDR--IF-TRVGAADDLASGRST 669 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB--SSSEEEECCCCE--EE-EEEC-----------
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc--chhcccceeHHH--HH-hhCCHHHHHHhhhhh
Confidence 356778888 8899999999999999999999999864 3333110 000000000000 00 000000 00000000
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH-HHHHHHHHHHhchhhccccceeeh
Q psy2881 165 DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL-MRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 165 ~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l-~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
-......-..+...+.+|+++|+|||+ |+.....+ ...+..+.+..+.+++++||+..+
T Consensus 670 f~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el 732 (800)
T 1wb9_A 670 FMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 732 (800)
T ss_dssp CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred hhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHH
Confidence 011111111122347899999999994 66655554 567777765457889999999765
No 106
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.32 E-value=7.4e-12 Score=121.87 Aligned_cols=121 Identities=15% Similarity=0.002 Sum_probs=84.3
Q ss_pred eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE-EEecccCCChhHHHHHHHhcccCCCC----------eeecC-
Q psy2881 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV-LLAACDTFRAAAYEQLLILGKYNDVP----------VISEK- 161 (302)
Q Consensus 94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V-~l~~~d~~~~~~~~ql~~~~~~~~~~----------~~~~~- 161 (302)
..+.+|++++|+||||||||||++.+++...+.++++ .+...+.. .++.......+.. .+...
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~-----~~l~~~~~~~g~~~~~~~~~g~~~~~~~~ 350 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR-----AQLLRNAYSWGMDFEEMERQNLLKIVCAY 350 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH-----HHHHHHHHTTSCCHHHHHHTTSEEECCCC
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH-----HHHHHHHHHcCCCHHHHHhCCCEEEEEec
Confidence 4678999999999999999999999999998875555 55554431 1221111112211 11111
Q ss_pred -CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc-----chHHHHHHHHHHHHHhchhhcccccee
Q psy2881 162 -KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS-----TQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 162 -~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~-----~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
......+....++++++..+|++||+| |+ |.. ....+.+.++.+++ .+.++++++|+.
T Consensus 351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~ 417 (525)
T 1tf7_A 351 PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSD 417 (525)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECS
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcc
Confidence 112345566667899999999999999 96 777 67777777777754 588999999987
No 107
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.31 E-value=1.4e-12 Score=120.16 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=69.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------HHHHHHHhcccCCCCeee
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------AYEQLLILGKYNDVPVIS 159 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------~~~ql~~~~~~~~~~~~~ 159 (302)
.++++++|++.+|++++|+||||||||||+++|+|++.|++|+|.+.+.|+.... ....+.++.+..+.....
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 122 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRP 122 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEEC
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccccc
Confidence 3567789999999999999999999999999999999999999999998874221 111122222222111111
Q ss_pred cCCCCCH---HHHHHHHHHHHHhCCCCeEEEcCCCC
Q psy2881 160 EKKITDP---AAIAFNAINIAQKKNTDIVIVDTSGR 192 (302)
Q Consensus 160 ~~~~~~~---~~~~~~~la~al~~~~~llllDEP~d 192 (302)
....... .....+.+......+.+++|+|+||-
T Consensus 123 ~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi 158 (337)
T 2qm8_A 123 SPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGV 158 (337)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CcccccccchHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 1111111 11223333334457899999999993
No 108
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.31 E-value=5.3e-13 Score=121.67 Aligned_cols=48 Identities=31% Similarity=0.425 Sum_probs=39.8
Q ss_pred Cccee-cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC--eEEEecccCC
Q psy2881 91 PLIFK-KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK--SVLLAACDTF 138 (302)
Q Consensus 91 ~i~l~-~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g--~V~l~~~d~~ 138 (302)
+++.. +.+|++++|+||||||||||+++|+|+++|..| +|.+...|.+
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 45543 789999999999999999999999999998765 5777766643
No 109
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.30 E-value=4e-12 Score=116.25 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 167 AAIAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 167 ~~~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
.+...-+||++++ .+|+++|+|||+ |+.....+++.|.++. .+.++++++|+..
T Consensus 223 Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~ 283 (322)
T 1e69_A 223 GEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI 283 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH
Confidence 3344445888886 688999999998 8888889999998874 2678899999854
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.30 E-value=3.9e-12 Score=103.54 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=62.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI 176 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 176 (302)
+|+.++|+||||+|||||++.+++.+.+.+. .+.+.+.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------------------------------ 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------------------------------ 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------------------------------
Confidence 7899999999999999999999999987532 455555443211
Q ss_pred HHhCCCCeEEEcCCC--CccchHHHHHHHHHHHHHhchh-hccccce
Q psy2881 177 AQKKNTDIVIVDTSG--RLSTQSHLMRELKKIKKVIEKK-IFELPYE 220 (302)
Q Consensus 177 al~~~~~llllDEP~--d~~~~~~l~~~L~~l~~~~~~~-i~~~~hd 220 (302)
++..+|++|++|||+ +...+..+++.+..+.+. +.+ +++++|.
T Consensus 79 ~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~-g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNS-GKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHH-TCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHc-CCcEEEEECCC
Confidence 124579999999998 444466677777776654 555 6666663
No 111
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.29 E-value=2.4e-12 Score=130.00 Aligned_cols=123 Identities=11% Similarity=0.070 Sum_probs=69.7
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHH
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPA 167 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~ 167 (302)
+++++|+ |++++|+|||||||||+++.|+|+.. ++.|.+.- ....+.+...| +....++.-. ...+....
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp--a~~~~i~~v~~---i~~~~~~~d~-l~~g~S~~ 639 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP--AEEAHLPLFDG---IYTRIGASDD-LAGGKSTF 639 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS--SSEEEECCCSE---EEEECCC-------CCSHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee--hhccceeeHHH---hhccCCHHHH-HHhcccHH
Confidence 4455665 99999999999999999999999875 67775421 10000110000 0001111000 00011111
Q ss_pred HHHHHHHHHHH--hCCCCeEEEcCCC------Cccch-HHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 168 AIAFNAINIAQ--KKNTDIVIVDTSG------RLSTQ-SHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 168 ~~~~~~la~al--~~~~~llllDEP~------d~~~~-~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
......+++++ +.+|+++|+|||| |.... ..+++.|.+ .+.+++++||+..+.
T Consensus 640 ~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 640 MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFELT 701 (765)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH
Confidence 12222366666 8999999999994 33322 234444433 578899999997764
No 112
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.29 E-value=4.8e-12 Score=105.57 Aligned_cols=108 Identities=15% Similarity=0.044 Sum_probs=66.0
Q ss_pred ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHH
Q psy2881 93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAF 171 (302)
Q Consensus 93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (302)
++.+.+|+.++|+||||+|||||++.+++.+.+..| .+.+.+... ..+.+....... . ..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~--------~-~~------ 92 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD----LIFRLKHLMDEG--------K-DT------ 92 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH----HHHHHHHHHHHT--------C-CS------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH----HHHHHHHHhcCc--------h-HH------
Confidence 456677999999999999999999999999986655 444432210 111111110000 0 01
Q ss_pred HHHHHHHhCCCCeEEEcCCC----CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 172 NAINIAQKKNTDIVIVDTSG----RLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 172 ~~la~al~~~~~llllDEP~----d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
..+ ....+|++|++|||+ |+.....+.+.+....+ .+.+++++||...
T Consensus 93 ~~~--~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 93 KFL--KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSL 144 (180)
T ss_dssp HHH--HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred HHH--HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCCh
Confidence 111 223579999999997 33444455555655543 3677788888543
No 113
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.29 E-value=5.9e-13 Score=109.53 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=45.6
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT 137 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~ 137 (302)
+++++||++++|++++|+||||||||||++.|+|++ |.+|+|.+.|.++
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 567889999999999999999999999999999999 9999999888765
No 114
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.29 E-value=1.3e-12 Score=121.54 Aligned_cols=120 Identities=11% Similarity=0.019 Sum_probs=79.3
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeee-cCCCCC-
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS-EKKITD- 165 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~-~~~~~~- 165 (302)
++++++|.+++|++++|+||||||||||++.|+++++|+.|.|.+.+....+... +. ..+.++. +.....
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~------~~--~~v~~v~~q~~~~~~ 235 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPD------HP--NHVHLFYPSEAKEEE 235 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTT------CS--SEEEEECC-------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccc------cC--CEEEEeecCcccccc
Confidence 4477899999999999999999999999999999999999999998754322110 11 1122222 111100
Q ss_pred -HHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccce
Q psy2881 166 -PAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYE 220 (302)
Q Consensus 166 -~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd 220 (302)
......+.|+.++..+|+.+++||+.+. +..+.+..+.. .+.+.+...|.
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~~----~~~~~l~~l~~-g~~~~l~t~H~ 286 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRGG----EAYDFINVAAS-GHGGSITSCHA 286 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCST----HHHHHHHHHHT-TCCSCEEEEEC
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchHH----HHHHHHHHHhc-CCCeEEEEECC
Confidence 1123456688888889999999999652 34455665542 23455556664
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.28 E-value=1.3e-11 Score=107.20 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=70.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhH--hhh-----CCCeEEEecccCCChhHHHHHHHhcccCCCC---------eee
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANY--FKK-----RKKSVLLAACDTFRAAAYEQLLILGKYNDVP---------VIS 159 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~-----~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~---------~~~ 159 (302)
+++|++++|+|||||||||++..|++. .++ .++.+++.+.+.+.... +..+.+..+.. +..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~ 97 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER---LLAVAERYGLSGSDVLDNVAYAR 97 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH---HHHHHHHTTCCHHHHHHTEEEEE
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHH---HHHHHHHcCCCHHHHhhCeEEEe
Confidence 578999999999999999999999994 444 45566666665433221 11122222221 111
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc-------c-----hHHHHHHHHHHHHHhchhhccccceee
Q psy2881 160 EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS-------T-----QSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 160 ~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~-------~-----~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
.....+.........+.....+|++|++|||+ +.. . ...++..|.++++..+.++++++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 11111111111111222233689999999997 432 2 234666677777777889999999544
No 116
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.25 E-value=1.6e-12 Score=128.57 Aligned_cols=183 Identities=14% Similarity=0.068 Sum_probs=93.8
Q ss_pred ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHH
Q psy2881 93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAF 171 (302)
Q Consensus 93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (302)
+++++. ++|+||||||||||+++|+|++.| ++|.|.+.|.++...... ....+....+ +..+.....+...+.
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~-~~~~~~~~i~--~v~Q~~~l~~~~tv~ 115 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLV-NEDKWRGKVS--YQDYEIEISDASEVE 115 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECS-SSSCCEEEES--CC---CCCCCHHHHH
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCC-ccccceeEEe--eecccccCCCHHHHH
Confidence 455542 999999999999999999999888 799999888774200000 0001112211 111111111112222
Q ss_pred HHHHHH---------------------HhCCCCeEEEcCCC---------CccchHHHHHHHHHHHHH-hchhhccccce
Q psy2881 172 NAINIA---------------------QKKNTDIVIVDTSG---------RLSTQSHLMRELKKIKKV-IEKKIFELPYE 220 (302)
Q Consensus 172 ~~la~a---------------------l~~~~~llllDEP~---------d~~~~~~l~~~L~~l~~~-~~~~i~~~~hd 220 (302)
+.+..+ ....|+++|+|||| |+.....+.+.+.++... .+.++++++|+
T Consensus 116 e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~ 195 (608)
T 3szr_A 116 KEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN 195 (608)
T ss_dssp TTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred HHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 222211 12459999999993 666677888888886433 35566778888
Q ss_pred eehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchh--HHHHhhhHh--CCceEEEecCCCC-CcC
Q psy2881 221 IFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGG--ILAAIAKKY--SIPLYFIGIGEKI-EDL 286 (302)
Q Consensus 221 ~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g--~~~~~~~~~--~~pv~~~~~gq~v-~dl 286 (302)
...+ ...++.-+..+...-...-.|+||.|-...+. .+.+.+... .+..-|+++-.+- .|+
T Consensus 196 ~d~a-----~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~~~ 261 (608)
T 3szr_A 196 VDIA-----TTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEI 261 (608)
T ss_dssp SCTT-----TCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTTCT
T ss_pred chhc-----cHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchhhc
Confidence 6654 11233333444322223457999998754432 123333322 2334566655444 444
No 117
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.20 E-value=2.8e-10 Score=106.92 Aligned_cols=173 Identities=14% Similarity=0.128 Sum_probs=92.9
Q ss_pred HCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcc----eecCCCeEEEEEcCCCCCHHHHHHH
Q psy2881 43 KADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLI----FKKCKPFVIMIVGVNGVGKTTTIGK 118 (302)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~----l~~~~g~ii~lvGpnGsGKTTll~~ 118 (302)
..|++..-+.++++.+++.+. ....+...+.+.-.. ...+..-...++ --+++|+++.|+||||||||||+..
T Consensus 121 ~~gis~~~~~~i~~~a~~~~~-~~~~ta~~l~~~~~~--~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~ 197 (400)
T 3lda_A 121 IKGISEAKADKLLNEAARLVP-MGFVTAADFHMRRSE--LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHT 197 (400)
T ss_dssp STTCCHHHHHHHHHHHHHHSC-CSCCCHHHHHHHHHT--SCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcc-ccCCCHHHHHhhhcc--CCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHH
Confidence 457777777777777665432 222333333221100 001111111111 1367899999999999999999996
Q ss_pred HH--hHhhhC----CC-eEEEecccCCChhHHHHHHHhcccCCCC--------eeecCCCCCH-HHHHHHHHHHHHhCCC
Q psy2881 119 LA--NYFKKR----KK-SVLLAACDTFRAAAYEQLLILGKYNDVP--------VISEKKITDP-AAIAFNAINIAQKKNT 182 (302)
Q Consensus 119 La--g~~~~~----~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~la~al~~~~ 182 (302)
++ +..+++ ++ .+++.+.+.++... +..+++..++. .+........ ......+.......+|
T Consensus 198 la~~~~~p~~~Gg~~~~viyid~E~~~~~~r---l~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~ 274 (400)
T 3lda_A 198 LAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR---LVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRF 274 (400)
T ss_dssp HHHHTTSCGGGTCCSSEEEEEESSSCCCHHH---HHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCE
T ss_pred HHHHhccCcccCCCCCcEEEEeCCCccCHHH---HHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCC
Confidence 64 444442 23 55666665544322 22233333332 1111111111 1111222222334689
Q ss_pred CeEEEcCCC---Cccch------------HHHHHHHHHHHHHhchhhcccccee
Q psy2881 183 DIVIVDTSG---RLSTQ------------SHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 183 ~llllDEP~---d~~~~------------~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
++|++|+|+ +.... ..++..|+++++..+.++++++|..
T Consensus 275 ~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 275 SLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp EEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred ceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 999999997 32211 5678888899888899999999963
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.18 E-value=4.2e-12 Score=109.94 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=70.6
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCCC-----hh-------HHHHHHHhcc-cCCCCeee
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTFR-----AA-------AYEQLLILGK-YNDVPVIS 159 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~~-----~~-------~~~ql~~~~~-~~~~~~~~ 159 (302)
..++|++++|+||||||||||+++|+|.++| ..|.|.+.+.+... .+ ..+.+..... ...+.+..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 4578999999999999999999999999985 57888887765421 00 1111111000 00000000
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881 160 EKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII 225 (302)
Q Consensus 160 ~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl 225 (302)
..++.. ... +. ..+..++++|+| .|+.....+.+.+. .+.+++++||+...+.
T Consensus 92 ~~yg~~-~~~----v~-~~l~~G~illLD--LD~~~~~~i~~~l~-----~~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 92 NYYGTS-REA----IE-QVLATGVDVFLD--IDWQGAQQIRQKMP-----HARSIFILPPSKIELD 144 (219)
T ss_dssp EEEEEE-HHH----HH-HHHTTTCEEEEE--CCHHHHHHHHHHCT-----TCEEEEEECSSHHHHH
T ss_pred ccCCCC-HHH----HH-HHHhcCCeEEEE--ECHHHHHHHHHHcc-----CCEEEEEECCCHHHHH
Confidence 001111 111 22 234568999999 78877777766654 3678999999876543
No 119
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.17 E-value=1.1e-11 Score=108.73 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=26.3
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
++++++||++++|++++|+|||||||||++++|++++
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999987
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.15 E-value=2.3e-11 Score=112.97 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=78.9
Q ss_pred cCCCcceecCC--CeEEEEEcCCCCCHHHHHHHHHhHhhhCC----CeEEEe----cccCC-ChhHHHHHHHhcc-----
Q psy2881 88 LEKPLIFKKCK--PFVIMIVGVNGVGKTTTIGKLANYFKKRK----KSVLLA----ACDTF-RAAAYEQLLILGK----- 151 (302)
Q Consensus 88 ~l~~i~l~~~~--g~ii~lvGpnGsGKTTll~~Lag~~~~~~----g~V~l~----~~d~~-~~~~~~ql~~~~~----- 151 (302)
+.+.+++++.+ |+.++|+||||||||||+++|+|++.|+. |++.+. +.+.. ......++....+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 45578899999 99999999999999999999999999988 888763 22221 1110111111100
Q ss_pred ----cCCCCeeecCCCCCHH-HHH---------HHHHHHHH-hCCCCeEEEcC---CC---------CccchHHHHHHHH
Q psy2881 152 ----YNDVPVISEKKITDPA-AIA---------FNAINIAQ-KKNTDIVIVDT---SG---------RLSTQSHLMRELK 204 (302)
Q Consensus 152 ----~~~~~~~~~~~~~~~~-~~~---------~~~la~al-~~~~~llllDE---P~---------d~~~~~~l~~~L~ 204 (302)
..++.+.. . +.. ... ...++++. ..+|+++++|| |. |...+..+.+.|.
T Consensus 237 ~~t~~~nl~~~~--~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~ 312 (365)
T 1lw7_A 237 AVRHSHKIAFID--T--DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLK 312 (365)
T ss_dssp HHHHCSSEEEES--S--CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHH
T ss_pred HHhccCCEEEEe--C--CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHH
Confidence 11121111 1 110 111 11244443 46899999998 52 5667778888888
Q ss_pred HHHHHhchhhccccc
Q psy2881 205 KIKKVIEKKIFELPY 219 (302)
Q Consensus 205 ~l~~~~~~~i~~~~h 219 (302)
++.+..+.++++++|
T Consensus 313 ~l~~~~~~~ililde 327 (365)
T 1lw7_A 313 KLLDKYKVPYIEIES 327 (365)
T ss_dssp HHHHGGGCCCEEEEC
T ss_pred HHHHHcCCCEEEeCC
Confidence 877655677776665
No 121
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.13 E-value=4.8e-12 Score=116.90 Aligned_cols=48 Identities=23% Similarity=0.122 Sum_probs=44.4
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
+++++ |++.+|++++|+||||||||||+++|+|+..|+.|.|.+.|.+
T Consensus 61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 56778 9999999999999999999999999999999999999998865
No 122
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.09 E-value=7.4e-12 Score=111.77 Aligned_cols=38 Identities=32% Similarity=0.326 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
.++|+||||||||||+++|+|+..|++|+|.+.|.+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~ 41 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIP 41 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccC
Confidence 58999999999999999999999999999999987653
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.09 E-value=8.3e-10 Score=95.78 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=75.2
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhccc-------CCCCeee--------
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY-------NDVPVIS-------- 159 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~-------~~~~~~~-------- 159 (302)
-+++|++++|+|||||||||++..++....+.++.|.+.+.+.......+....++-. ..+.+..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 98 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGK 98 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhccc
Confidence 4678999999999999999998888777666777888877654321111111111100 0111111
Q ss_pred --------cCCCCCHHHHHHHHHHHHH-hCCCCeEEEcCCC-----CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 160 --------EKKITDPAAIAFNAINIAQ-KKNTDIVIVDTSG-----RLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 160 --------~~~~~~~~~~~~~~la~al-~~~~~llllDEP~-----d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
.....+..... +.+.+++ ..+|+++++|+++ |.......+..|.++.+..+.++++++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 99 SKEYEKYIVHDLTDIREFI-EVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp --CCCSCBCSCCSSHHHHH-HHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred ccccccccccCccCHHHHH-HHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 00112222222 2222222 2579999999996 3334456667777777777888888888644
No 124
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.08 E-value=1.9e-11 Score=116.27 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=44.5
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
+++++ |++.+|++++|+||||||||||+++|+|+..|+.|.|.+.|.
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 56788 999999999999999999999999999999999999999987
No 125
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.04 E-value=6.1e-11 Score=113.64 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=47.6
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
.+++++||++++ ++++|+||||||||||+++|+|+++|++|+|.+.|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 367899999999 999999999999999999999999999999999998764
No 126
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.01 E-value=1.5e-10 Score=105.20 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=36.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEeccc
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACD 136 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d 136 (302)
.+|++++|+|||||||||++++|++++. |++|+|.+.+.|
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 7899999999999999999999999998 999999995444
No 127
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.94 E-value=2.5e-09 Score=98.27 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=41.9
Q ss_pred HHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 173 AINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 173 ~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
++|++++.+|+++|+|||+ |+.....+++.|.++.+. +.+++++|||..
T Consensus 264 ~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~ 315 (339)
T 3qkt_A 264 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE 315 (339)
T ss_dssp HHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG
T ss_pred HHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHH
Confidence 4778888999999999998 888889999999888644 678999999854
No 128
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.92 E-value=2.9e-10 Score=103.00 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=41.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA 134 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~ 134 (302)
++++++||++++|++++|+||||||||||++.|+|++ +|+|....
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v 158 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA 158 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe
Confidence 5788999999999999999999999999999999998 79997643
No 129
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.91 E-value=2.5e-09 Score=100.89 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=32.0
Q ss_pred CCCcceecCCCeE--EEEEcCCCCCHHHHHHHHHhHh
Q psy2881 89 EKPLIFKKCKPFV--IMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 89 l~~i~l~~~~g~i--i~lvGpnGsGKTTll~~Lag~~ 123 (302)
++++||++.+|++ ++|+||||||||||+++|+|..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 6788999999999 9999999999999999999974
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=3.8e-10 Score=103.57 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=59.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh-HhhhCCCeEEEecccCCChhHH-HHHHHhcccCCCCeeecC---CCCCHHHHHHHHHHH
Q psy2881 102 IMIVGVNGVGKTTTIGKLAN-YFKKRKKSVLLAACDTFRAAAY-EQLLILGKYNDVPVISEK---KITDPAAIAFNAINI 176 (302)
Q Consensus 102 i~lvGpnGsGKTTll~~Lag-~~~~~~g~V~l~~~d~~~~~~~-~ql~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~ 176 (302)
+.|+||||+||||+++.+++ ++.+..|.+.+.+.+....... ....+.. ...++... ..........+.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS---SPYHLEITPSDMGNNDRIVIQELLKE 115 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE---CSSEEEECCC----CCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec---ccceEEecHhhcCCcchHHHHHHHHH
Confidence 89999999999999999999 6788899998887654321110 1111111 11111111 011100012222221
Q ss_pred H--------------HhCCCCeEEEcCCC--CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 177 A--------------QKKNTDIVIVDTSG--RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 177 a--------------l~~~~~llllDEP~--d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
+ +..+|+++|+|||. |......+++.+.+.. .+.++++++|+...+
T Consensus 116 ~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 116 VAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPI 177 (354)
T ss_dssp HTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHST--TTEEEEEEESCSCSS
T ss_pred HHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHH
Confidence 1 24578999999998 5555555666665542 256788889976543
No 131
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.90 E-value=2.2e-09 Score=98.76 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=45.2
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA 140 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~ 140 (302)
++++++...+|.+++|+|+|||||||+++.|++.+.+.+++|.+.+.|++..
T Consensus 46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 97 (341)
T ss_dssp HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence 3455677788999999999999999999999999999999999999998643
No 132
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.88 E-value=5.7e-10 Score=108.04 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=64.2
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeec----CCC
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE----KKI 163 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~----~~~ 163 (302)
+++++++.+.+|++++|+||||||||||++.|+++++|+.|.|.+.+.+-..... ...+.+... ...
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---------~~~v~~~~r~~~~~~~ 319 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---------ENWIAEVTRTGMGEGE 319 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---------SSEEEEECBCCSSSCC
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---------CCeEEEEeecccccCC
Confidence 3456778888999999999999999999999999999999999998765332110 000011110 011
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEcCCCCcc
Q psy2881 164 TDPAAIAFNAINIAQKKNTDIVIVDTSGRLS 194 (302)
Q Consensus 164 ~~~~~~~~~~la~al~~~~~llllDEP~d~~ 194 (302)
... .+.+..++-++||.++++|-.+..
T Consensus 320 ~~~----~~~l~~~LR~~PD~iivgEir~~E 346 (511)
T 2oap_1 320 IDM----YDLLRAALRQRPDYIIVGEVRGRE 346 (511)
T ss_dssp BCH----HHHHHTTGGGCCSEEEESCCCSTH
T ss_pred cCH----HHHHHHhhccCCCeEEeCCcCHHH
Confidence 122 233445667899999999987543
No 133
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.85 E-value=7.5e-10 Score=100.21 Aligned_cols=44 Identities=32% Similarity=0.370 Sum_probs=21.8
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH-hhhCCCeEEEecccC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY-FKKRKKSVLLAACDT 137 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~-~~~~~g~V~l~~~d~ 137 (302)
.++++++|++ +|+||||||||||++.|+|. +.|.+| |.+.|.+.
T Consensus 12 ~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~ 56 (301)
T 2qnr_A 12 SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKI 56 (301)
T ss_dssp ------CEEE------EEEEETTSSHHHHHHHHHC-----------------
T ss_pred EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCccc
Confidence 4677888876 99999999999999999997 778888 77666554
No 134
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.81 E-value=2.8e-09 Score=93.21 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH---hHhhhCCCeEEEecc
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLA---NYFKKRKKSVLLAAC 135 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~La---g~~~~~~g~V~l~~~ 135 (302)
++++++|+|||||||||+++.|+ |+..++.|+|.+.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence 47899999999999999999999 888888888877654
No 135
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.81 E-value=9.5e-10 Score=95.29 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=22.8
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHH-hHh
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLA-NYF 123 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~La-g~~ 123 (302)
..+++||++.+|++++|+|||||||||++++|+ +++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 457899999999999999999999999999999 998
No 136
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.80 E-value=1e-08 Score=94.72 Aligned_cols=116 Identities=17% Similarity=0.099 Sum_probs=71.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC----eeecCCCCCHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP----VISEKKITDPAAIAF 171 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~~~~~~~~~~~~~~ 171 (302)
+++|+++.|.||+|+||||++..++......+++|.+.+.+...... +++..++. .+.. ..... ...
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~------~a~~lG~~~~~l~i~~--~~~~e-~~l 128 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE------YAKKLGVDTDSLLVSQ--PDTGE-QAL 128 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH------HHHHTTCCGGGCEEEC--CSSHH-HHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH------HHHHcCCCHHHeEEec--CCCHH-HHH
Confidence 46899999999999999999999998888778888887765422111 12223321 1111 11222 121
Q ss_pred HHHHHHHh--CCCCeEEEcCCCCcc---------------ch-HHHHHHHHHH---HHHhchhhcccccee
Q psy2881 172 NAINIAQK--KNTDIVIVDTSGRLS---------------TQ-SHLMRELKKI---KKVIEKKIFELPYEI 221 (302)
Q Consensus 172 ~~la~al~--~~~~llllDEP~d~~---------------~~-~~l~~~L~~l---~~~~~~~i~~~~hd~ 221 (302)
+ ++++++ .+|++|++|+++-.. .+ ..+.+.++++ .+..+.++++++|-.
T Consensus 129 ~-~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~ 198 (349)
T 2zr9_A 129 E-IADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR 198 (349)
T ss_dssp H-HHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred H-HHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 2 344454 459999999997111 11 1233444444 466688888888844
No 137
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.79 E-value=3.2e-09 Score=102.99 Aligned_cols=48 Identities=6% Similarity=0.153 Sum_probs=43.3
Q ss_pred HHHHHhCCC--CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 174 INIAQKKNT--DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 174 la~al~~~~--~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
||++++.+| +++|+|||+ |+.....+.+.|+++.+ +.+++++||+..+
T Consensus 408 la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~ 460 (517)
T 4ad8_A 408 LAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQI 460 (517)
T ss_dssp HHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHH
T ss_pred HHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHH
Confidence 889999999 999999997 99999999999999975 6889999998654
No 138
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.78 E-value=1.5e-08 Score=85.58 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=30.2
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh-----hhCCCeEE
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF-----KKRKKSVL 131 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~-----~~~~g~V~ 131 (302)
++++ |++.+|..++|+|+||||||||++.|+|.. .|+.|.+.
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~ 63 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ 63 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence 4444 788899999999999999999999999987 66666554
No 139
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.78 E-value=1.1e-08 Score=91.30 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 70 TEQVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 70 ~~~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
.+.+++.+.+.+..-+. .+++++++.+++| ++|+||||+|||||++.|++.+.+ +.|.+.+.++.
T Consensus 15 ~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 15 LEDIREELTMAILAPVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELL 81 (274)
T ss_dssp HHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTC
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHH
Confidence 44555555555443332 3567888988888 999999999999999999998876 57888877654
No 140
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.77 E-value=3.8e-09 Score=89.21 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=30.9
Q ss_pred ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881 93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT 137 (302)
Q Consensus 93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~ 137 (302)
|+++.+|++++|+|||||||||++++|+++++ .+.+.+.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~ 41 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHT 41 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceec
Confidence 45677899999999999999999999999963 455555443
No 141
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.77 E-value=4.9e-08 Score=90.19 Aligned_cols=236 Identities=17% Similarity=0.165 Sum_probs=115.7
Q ss_pred HHHHHHHHHH----HHHHHhhhcC-cCCh--HHHHHHHH----------HHHHCCCChHHHHHHHHHHHHHHh-cCCCCC
Q psy2881 8 RLKESLSKTA----CNLKSLIVNK-KIDK--NLYNELES----------DLLKADVGFETTQFLLNELKKIIY-SKKLFN 69 (302)
Q Consensus 8 ~~~~~~~~~~----~~~~~~~~~~-~~~~--~~~~~l~~----------~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 69 (302)
++.++++.++ ..+..++... .++. +.++++.+ .|-..|..++.+.++.....+... +.....
T Consensus 45 ~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~ 124 (357)
T 2e87_A 45 REELRVRTVSNVVRDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNE 124 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH
Confidence 3444555554 3344455443 3333 67777774 444557777766665555544433 222112
Q ss_pred HHHHHHHHHHHHHHHhhccC-------------CCcceec-CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 70 TEQVRNVLHNLLVNLLKSLE-------------KPLIFKK-CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 70 ~~~~~~~l~~~l~~~l~~~l-------------~~i~l~~-~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
.+..++.....+.+.++..- .... .+ ...-.++++|++|||||||++.|++... ...+.
T Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~v~lvG~~gvGKSTLin~L~~~~~------~~~~~ 197 (357)
T 2e87_A 125 IAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLP-VVDLEIPTVVIAGHPNVGKSTLLKALTTAKP------EIASY 197 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSC-CCCSSSCEEEEECSTTSSHHHHHHHHCSSCC------EEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccCCCCCEEEEECCCCCCHHHHHHHHhCCCC------ccCCC
Confidence 23333444444433322111 1100 11 2445899999999999999999987431 11111
Q ss_pred cCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCC--ccc--hHHHHHHHHHHHHHhc
Q psy2881 136 DTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGR--LST--QSHLMRELKKIKKVIE 211 (302)
Q Consensus 136 d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d--~~~--~~~l~~~L~~l~~~~~ 211 (302)
+.. .......... ..+.++.++|+||. ... ...+. ...+.
T Consensus 198 ~~~-------------t~~~~~~~~~-----------------~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~---- 241 (357)
T 2e87_A 198 PFT-------------TRGINVGQFE-----------------DGYFRYQIIDTPGLLDRPISERNEIE--KQAIL---- 241 (357)
T ss_dssp TTC-------------SSCEEEEEEE-----------------ETTEEEEEEECTTTSSSCSTTSCHHH--HHHHH----
T ss_pred CCe-------------eeceeEEEEE-----------------ecCceEEEEeCCCccccchhhhhHHH--HHHHH----
Confidence 100 0000000000 01246889999982 111 01111 01111
Q ss_pred hhhccccceeehhhcCCCCh----hHHH-HHHHHHhhc-C-CCeEEEecCCCCCchh--HHHHhhhHhCCceEEEe--cC
Q psy2881 212 KKIFELPYEIFLIIDGNTGQ----NTLS-QIKEFSKIL-R-ITGLIITKLDGTTKGG--ILAAIAKKYSIPLYFIG--IG 280 (302)
Q Consensus 212 ~~i~~~~hd~~lvl~~~~g~----~~~~-~~~~f~~~~-~-~~~~i~tk~d~~~~~g--~~~~~~~~~~~pv~~~~--~g 280 (302)
......+-..+|+|++... +... ....+.... + +--++.||.|...... .+.+.+...+.|+.+++ +|
T Consensus 242 -~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 242 -ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp -GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTT
T ss_pred -HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence 1112345667778866432 2111 122232222 2 2246789999865433 24555556788999988 78
Q ss_pred CCCCcCc
Q psy2881 281 EKIEDLQ 287 (302)
Q Consensus 281 q~v~dl~ 287 (302)
+.++++.
T Consensus 321 ~gi~~l~ 327 (357)
T 2e87_A 321 TGIDLVK 327 (357)
T ss_dssp BTHHHHH
T ss_pred cCHHHHH
Confidence 8887664
No 142
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.76 E-value=8.9e-08 Score=91.34 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=78.0
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccC----------------
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYN---------------- 153 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~---------------- 153 (302)
++..-+.+|+++.|.|++|+||||++..+++...+. +..|.+.+.+.........+. +...
T Consensus 195 ~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~--~~~~~~~~~~l~~g~l~~~~ 272 (454)
T 2r6a_A 195 RMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRML--CAEGNINAQNLRTGKLTPED 272 (454)
T ss_dssp HHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHH--HHHHTCCHHHHHTSCCCHHH
T ss_pred hhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH--HHHcCCCHHHHhcCCCCHHH
Confidence 344457899999999999999999999999988774 458999886653211111100 0000
Q ss_pred ------------CCCeeecCC-CCCHHHHHHHHHHHHHh--CCCCeEEEcCCC--C-cc----ch----HHHHHHHHHHH
Q psy2881 154 ------------DVPVISEKK-ITDPAAIAFNAINIAQK--KNTDIVIVDTSG--R-LS----TQ----SHLMRELKKIK 207 (302)
Q Consensus 154 ------------~~~~~~~~~-~~~~~~~~~~~la~al~--~~~~llllDEP~--d-~~----~~----~~l~~~L~~l~ 207 (302)
..+++.... ........ ..++.+. .+|++|++|+++ . .. +. ..++..|+.++
T Consensus 273 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA 350 (454)
T 2r6a_A 273 WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALA 350 (454)
T ss_dssp HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 112222221 12332222 2334443 689999999996 2 11 11 45677788888
Q ss_pred HHhchhhccccc
Q psy2881 208 KVIEKKIFELPY 219 (302)
Q Consensus 208 ~~~~~~i~~~~h 219 (302)
+..+.++++++|
T Consensus 351 ke~~i~vi~~sq 362 (454)
T 2r6a_A 351 RELEVPVIALSQ 362 (454)
T ss_dssp HHHTCCEEEEEC
T ss_pred HHhCCeEEEEec
Confidence 888888888888
No 143
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.75 E-value=1.3e-08 Score=96.03 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=56.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeee--cCCCCCHHHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS--EKKITDPAAIAFNAI 174 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~--~~~~~~~~~~~~~~l 174 (302)
.+|++++|+||||||||||++.|++++.|.+|+|.+.+.++.... .++.... ...+.... ..+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~-----------~~~~q~~v~~~~g~~f~----~~l 229 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI-----------DGIGQTQVNPRVDMTFA----RGL 229 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC-----------SSSEEEECBGGGTBCHH----HHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc-----------CCcceEEEccccCcCHH----HHH
Confidence 578999999999999999999999999999999999986652100 0010000 00111222 234
Q ss_pred HHHHhCCCCeEEEcCCCCcc
Q psy2881 175 NIAQKKNTDIVIVDTSGRLS 194 (302)
Q Consensus 175 a~al~~~~~llllDEP~d~~ 194 (302)
..++-++|+++++.|--|..
T Consensus 230 r~~Lrq~pd~i~vgEiRd~e 249 (418)
T 1p9r_A 230 RAILRQDPDVVMVGEIRDLE 249 (418)
T ss_dssp HHHGGGCCSEEEESCCCSHH
T ss_pred HHHhccCCCeEEEcCcCCHH
Confidence 45566899999999865543
No 144
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.74 E-value=6.3e-09 Score=86.93 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=35.1
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
.+.+|++++|+|||||||||+++.|++. +..|.|.+.+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence 3678999999999999999999999997 678899987754
No 145
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.73 E-value=1e-08 Score=87.44 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=34.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEeccc
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACD 136 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d 136 (302)
.++|++++|+||||||||||+++|++++.|. .|.|.+++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 4689999999999999999999999999975 4555555544
No 146
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.72 E-value=1.3e-07 Score=87.27 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=68.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-CChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-FRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAI 174 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (302)
+++|+++.|.||+|||||||+..+++...+.+|+|.+.+.+. ......+++....+. + .+... ...... ...+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~--l-~i~~~--~~~e~~-l~~~ 131 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKS--L-LISQP--DHGEQA-LEIV 131 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGG--C-EEECC--SSHHHH-HHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhh--h-hhhhc--cCHHHH-HHHH
Confidence 468999999999999999999999999998889887765443 332211222111111 1 11211 122221 1212
Q ss_pred HH-HHhCCCCeEEEcCCCCcc---------------c----hHHHHHHHHHHHHHhchhhccccc
Q psy2881 175 NI-AQKKNTDIVIVDTSGRLS---------------T----QSHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 175 a~-al~~~~~llllDEP~d~~---------------~----~~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
.. ....+|+++++|+-.... . -..++..|..+++..+.+++++.|
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq 196 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ 196 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred HHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 11 123679999999764111 1 112344555666666777777665
No 147
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.67 E-value=2.8e-08 Score=91.70 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=38.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA 140 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~ 140 (302)
.++.+++|+|++|||||||++.|++.+.+.+|+|.+.+.|++..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 35789999999999999999999999999999999999998643
No 148
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.67 E-value=1.7e-07 Score=86.52 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=57.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HH----HHHHHhcccCCCCeeecCCCCCH---H
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AY----EQLLILGKYNDVPVISEKKITDP---A 167 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~----~ql~~~~~~~~~~~~~~~~~~~~---~ 167 (302)
+..+++|+|+.||||||++..|++.+...+.+|.+.+.|+.... +. .....+....++.+......... .
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45689999999999999999999998888889999998865322 11 11111111222222222222221 2
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCCCC
Q psy2881 168 AIAFNAINIAQKKNTDIVIVDTSGR 192 (302)
Q Consensus 168 ~~~~~~la~al~~~~~llllDEP~d 192 (302)
....+.+......+++++|+|+||-
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi 182 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGV 182 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCC
Confidence 2233445444557899999999993
No 149
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.63 E-value=5.8e-08 Score=82.29 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=39.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
..+|.+++|+|||||||||+++.|++.+.+.+|.|.+.+.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 46789999999999999999999999999999999998877653
No 150
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.60 E-value=3.4e-08 Score=83.93 Aligned_cols=39 Identities=41% Similarity=0.449 Sum_probs=32.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT 137 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~ 137 (302)
.++|++++|+|||||||||+++.|++++.| .+.+...|.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~ 41 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDH 41 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCc
Confidence 368999999999999999999999999876 566666654
No 151
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.60 E-value=1.7e-08 Score=85.58 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
++|++++|+||||||||||+++|+++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999999999985
No 152
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.59 E-value=2e-08 Score=84.11 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
|++++|+|||||||||++++|+++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999998
No 153
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.59 E-value=1.2e-08 Score=92.30 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=30.8
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE---ecccCC
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL---AACDTF 138 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l---~~~d~~ 138 (302)
++..|++++|+||||||||||+++|+|+..|+.|+|.+ .|.++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t 211 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT 211 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCce
Confidence 34578999999999999999999999999999999998 776654
No 154
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.57 E-value=1.6e-09 Score=94.18 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=33.3
Q ss_pred ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
++++.+ ++++|+|||||||||++++|+|++.|++|.|.+.+.+..
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEA 66 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--------
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcc
Confidence 455544 789999999999999999999999999999999988763
No 155
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.54 E-value=2.1e-07 Score=84.63 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh--------hhCCCeEEEecccCC
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF--------KKRKKSVLLAACDTF 138 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~--------~~~~g~V~l~~~d~~ 138 (302)
++++|+|+|||||||+++.|++.. .++.|+|.+++.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 689999999999999999999987 678999999887653
No 156
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.53 E-value=1e-08 Score=96.80 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=28.5
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR 126 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~ 126 (302)
.++++++|++ +|+||||||||||++.|+|...+.
T Consensus 25 ~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~ 58 (418)
T 2qag_C 25 SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYS 58 (418)
T ss_dssp TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCC
T ss_pred EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCC
Confidence 4677888875 999999999999999999987643
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.51 E-value=1.3e-07 Score=79.92 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=34.4
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
+..+|++++|+|||||||||+++.|++.+ |.+.+.+.+...
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~ 65 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS 65 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc
Confidence 34679999999999999999999999987 889998877654
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.49 E-value=1.3e-07 Score=84.00 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=38.1
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
+++++++.+++| ++|+||||+||||+++.|++.+. .|.|.+.+.+
T Consensus 64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~ 108 (278)
T 1iy2_A 64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 108 (278)
T ss_dssp HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHH
Confidence 466788888887 88999999999999999999875 6778877654
No 159
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.49 E-value=1.7e-07 Score=82.03 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=37.8
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
+++++++.+++| ++|+||||+||||+++.|++.+. .|.|.+.+.+
T Consensus 40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~ 84 (254)
T 1ixz_A 40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 84 (254)
T ss_dssp HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHH
Confidence 566778888887 88999999999999999999875 6778777644
No 160
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.48 E-value=1.8e-08 Score=91.36 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=26.4
Q ss_pred eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE
Q psy2881 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132 (302)
Q Consensus 94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l 132 (302)
+++.+|++++|+||||||||||++.|+|...+..|+|.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 566789999999999999999999999999999999987
No 161
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.48 E-value=8.8e-08 Score=90.32 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
++++|+++.++.++|+|+||||||||++.|++.
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 478999999999999999999999999999998
No 162
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.48 E-value=4.6e-08 Score=88.45 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=32.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE---ecccCC
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL---AACDTF 138 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l---~~~d~~ 138 (302)
..+|++++|+||||||||||++.|+ .+.|..|+|.+ .|.++.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t 206 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTT 206 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCce
Confidence 4578999999999999999999999 98999999998 666654
No 163
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.47 E-value=8.1e-08 Score=80.18 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
|++++|+|||||||||+++.|++ +.+|.+.+.+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccc
Confidence 68999999999999999999987 677889988754
No 164
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.47 E-value=6.1e-08 Score=81.96 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=37.0
Q ss_pred ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE--EEecccC
Q psy2881 93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV--LLAACDT 137 (302)
Q Consensus 93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V--~l~~~d~ 137 (302)
++..++|++++|+|||||||||+++.|++.+. ..|.+ .+.+.+.
T Consensus 19 ~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 19 RLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred HhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 44557899999999999999999999999998 56777 7776554
No 165
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.46 E-value=9e-07 Score=81.34 Aligned_cols=174 Identities=11% Similarity=0.085 Sum_probs=76.0
Q ss_pred HHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcc----eecCCCeEEEEEcCCCCCHHHHH
Q psy2881 41 LLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLI----FKKCKPFVIMIVGVNGVGKTTTI 116 (302)
Q Consensus 41 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~----l~~~~g~ii~lvGpnGsGKTTll 116 (302)
+...|++...+.++++.+.+.+.. ...+...+.+.... ...+..-...++ --+++|+++.|.||+|+||||++
T Consensus 63 ~~~~~is~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~--~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 63 CNVKGLSEAKVDKIKEAANKLIEP-GFLTAFEYSEKRKM--VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp -----------------------C-CSEEHHHHHHHGGG--CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHhhccc-CCCcHHHHHhhhcc--cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 344677777777777776655422 22233333211000 001111111111 14678999999999999999999
Q ss_pred HHHHhHhh-h-----CCCeEEEecccC-CChhHHHHHHHhcccCCCC--------eeecCCCCCHHHHHHHHHHHHH-h-
Q psy2881 117 GKLANYFK-K-----RKKSVLLAACDT-FRAAAYEQLLILGKYNDVP--------VISEKKITDPAAIAFNAINIAQ-K- 179 (302)
Q Consensus 117 ~~Lag~~~-~-----~~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~--------~~~~~~~~~~~~~~~~~la~al-~- 179 (302)
..++.... | .++.+.+.+.+. +.. +++..+.+..++. ++......+........+...+ .
T Consensus 140 ~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~---~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~ 216 (343)
T 1v5w_A 140 HTLCVTAQLPGAGGYPGGKIIFIDTENTFRP---DRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEE 216 (343)
T ss_dssp HHHHHHTTSCBTTTBCCCEEEEEESSSCCCH---HHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcccccCCCCCeEEEEECCCCCCH---HHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhc
Confidence 99998643 2 356777666543 232 2333333333322 1112122221111111111111 2
Q ss_pred -CCCCeEEEcCCC---Cc--c-----c-----hHHHHHHHHHHHHHhchhhccccce
Q psy2881 180 -KNTDIVIVDTSG---RL--S-----T-----QSHLMRELKKIKKVIEKKIFELPYE 220 (302)
Q Consensus 180 -~~~~llllDEP~---d~--~-----~-----~~~l~~~L~~l~~~~~~~i~~~~hd 220 (302)
.++++|++|+.+ +. . . ...++..|..+++..+.+++++.|-
T Consensus 217 ~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 217 AGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp CSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 679999999987 11 1 0 2345556677777778787777774
No 166
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.46 E-value=1.1e-07 Score=78.77 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=34.3
Q ss_pred CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCe
Q psy2881 90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS 129 (302)
Q Consensus 90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~ 129 (302)
+++++++.+| +++|+|||||||||++..|++.+.+..|+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 6788888888 99999999999999999999998776554
No 167
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.43 E-value=1.3e-07 Score=79.17 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
-.++|+|+||||||||++.+++...+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 36899999999999999999997654
No 168
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.42 E-value=8.2e-08 Score=80.95 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=28.8
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK 128 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g 128 (302)
++.+|++++|+|||||||||+++.|++.+.|+.|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 4678999999999999999999999999866433
No 169
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.41 E-value=1.1e-07 Score=79.22 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEe
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLA 133 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~ 133 (302)
+|++++|+|||||||||+++.|++.+++ ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 6899999999999999999999998863 44555543
No 170
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.40 E-value=5.7e-08 Score=80.63 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCC
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTF 138 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~ 138 (302)
++++|+|+|||||||+++.|++++.|+ .|.|.+++.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence 589999999999999999999999998 789999887754
No 171
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.40 E-value=1.5e-07 Score=81.44 Aligned_cols=41 Identities=29% Similarity=0.497 Sum_probs=36.0
Q ss_pred ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881 93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT 137 (302)
Q Consensus 93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~ 137 (302)
+.+.++|++++|.|||||||||+++.|+++ +|+|.+.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 445678999999999999999999999997 78899988763
No 172
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=1.5e-07 Score=79.40 Aligned_cols=37 Identities=27% Similarity=0.268 Sum_probs=25.2
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
..++++||++.+|.+++|+||+||||||+.+.|+..+
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999877
No 173
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.39 E-value=9.6e-07 Score=74.21 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=87.1
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881 100 FVIMIV-GVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ 178 (302)
Q Consensus 100 ~ii~lv-GpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al 178 (302)
.++++. +..|+||||+...||..+...+.+|.+.+.|.+.... .+.. ....+++++.... ....+.+. .+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~--~~~~-~~~~~~~~~~~~~-----~~l~~~l~-~l 72 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT--NWSK-AGKAAFDVFTAAS-----EKDVYGIR-KD 72 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH--HHHT-TSCCSSEEEECCS-----HHHHHTHH-HH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH--HHHh-cCCCCCcEEecCc-----HHHHHHHH-Hh
Confidence 367787 4678999999999999999888899999999764322 1111 1223344444322 22223333 35
Q ss_pred hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HHHHh------hcCCCeEEE
Q psy2881 179 KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KEFSK------ILRITGLII 251 (302)
Q Consensus 179 ~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~f~~------~~~~~~~i~ 251 (302)
..++|++|+|+|+... ......+. . ++.+.++...+.....+... +.+.. ..++ ++|+
T Consensus 73 ~~~yD~viiD~~~~~~--~~~~~~l~----~--------ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~ 137 (206)
T 4dzz_A 73 LADYDFAIVDGAGSLS--VITSAAVM----V--------SDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA-RFLI 137 (206)
T ss_dssp TTTSSEEEEECCSSSS--HHHHHHHH----H--------CSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE-EEEE
T ss_pred cCCCCEEEEECCCCCC--HHHHHHHH----H--------CCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE-EEEE
Confidence 6789999999997442 11111111 1 22333333333211222222 22221 2234 8899
Q ss_pred ecCCCC-CchhHHHHhhhHhCCceE
Q psy2881 252 TKLDGT-TKGGILAAIAKKYSIPLY 275 (302)
Q Consensus 252 tk~d~~-~~~g~~~~~~~~~~~pv~ 275 (302)
|+.+.. .....+.+.+.+++.|+.
T Consensus 138 N~~~~~~~~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 138 TRKIEMATMLNVLKESIKDTGVKAF 162 (206)
T ss_dssp CSBCTTEEEEHHHHHHHHHHTCCBC
T ss_pred eccCCCchHHHHHHHHHHHcCCcee
Confidence 999964 334556777777887765
No 174
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.39 E-value=1.7e-07 Score=85.36 Aligned_cols=42 Identities=31% Similarity=0.424 Sum_probs=36.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEecccCCC
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACDTFR 139 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d~~~ 139 (302)
.+-+++|+|||||||||++++|++++. |.+|+|.+.+.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 456999999999999999999999998 568899998888653
No 175
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.38 E-value=7.8e-07 Score=81.01 Aligned_cols=174 Identities=14% Similarity=0.156 Sum_probs=75.5
Q ss_pred HHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcc----eecCCCeEEEEEcCCCCCHHH
Q psy2881 39 SDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLI----FKKCKPFVIMIVGVNGVGKTT 114 (302)
Q Consensus 39 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~----l~~~~g~ii~lvGpnGsGKTT 114 (302)
+.+...|++...+.++++.+.+.+.. ...+...+.+.... ...+..-...++ --+++|+++.|.||+|+||||
T Consensus 46 ~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~ 122 (324)
T 2z43_A 46 DLSVAAGIPLSTAQKIIKEARDALDI-RFKTALEVKKERMN--VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQ 122 (324)
T ss_dssp ---------------------------CCCCHHHHHHHHCS--CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHhhccc-Cccchhhhhhhhcc--CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhH
Confidence 34445788888888888888766532 23444443211000 001111111111 135789999999999999999
Q ss_pred HHHHHHhHhh-hC-----CCeEEEecccC-CChhHHHHHHHhcccCCCCe-------eecCCCCCHHH--HHHHHHHHHH
Q psy2881 115 TIGKLANYFK-KR-----KKSVLLAACDT-FRAAAYEQLLILGKYNDVPV-------ISEKKITDPAA--IAFNAINIAQ 178 (302)
Q Consensus 115 ll~~Lag~~~-~~-----~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~la~al 178 (302)
++..++.... +. ++.+.+.+.+. ++. +++..+.+..++.. +... ...... .....+...+
T Consensus 123 la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~---~~l~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~~~~l~~l~~~~ 198 (324)
T 2z43_A 123 LCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRW---ERIENMAKALGLDIDNVMNNIYYIR-AINTDHQIAIVDDLQELV 198 (324)
T ss_dssp HHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH---HHHHHHHHHTTCCHHHHHHTEEEEE-CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCCCCeEEEEECCCCCCH---HHHHHHHHHhCCCHHHHhccEEEEe-CCCHHHHHHHHHHHHHHH
Confidence 9999998654 32 56777766543 332 23333333333321 1111 112111 1111122122
Q ss_pred -h-CCCCeEEEcCCC---Cc--------cc----hHHHHHHHHHHHHHhchhhccccc
Q psy2881 179 -K-KNTDIVIVDTSG---RL--------ST----QSHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 179 -~-~~~~llllDEP~---d~--------~~----~~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
. .++++|++|+.+ +. .. ...++..|..+++..+.+++++.|
T Consensus 199 ~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp HHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 2 689999999987 11 01 134555666677777777777666
No 176
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.38 E-value=1.7e-06 Score=82.92 Aligned_cols=95 Identities=22% Similarity=0.158 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881 71 EQVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148 (302)
Q Consensus 71 ~~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~ 148 (302)
+..++.+.+.+.. ++ ..++++++.+++| +.|+||+|+||||+++.+++.... --+.+.+.+....
T Consensus 22 ~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~--~f~~is~~~~~~~-------- 88 (476)
T 2ce7_A 22 EEAIEELKEVVEF-LKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV--PFFHISGSDFVEL-------- 88 (476)
T ss_dssp HHHHHHHHHHHHH-HHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGTTTC--------
T ss_pred HHHHHHHHHHHHH-hhChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC--CeeeCCHHHHHHH--------
Confidence 4444445544332 22 1344556666655 789999999999999999996531 1123333222110
Q ss_pred hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~ 191 (302)
+. ..........+++|....|.+|++||+.
T Consensus 89 ---------~~----g~~~~~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 89 ---------FV----GVGAARVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp ---------CT----THHHHHHHHHHHHHHHTCSEEEEEETGG
T ss_pred ---------Hh----cccHHHHHHHHHHHHhcCCCEEEEechh
Confidence 00 0122344556778888899999999994
No 177
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.35 E-value=1.7e-07 Score=86.61 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEe
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLA 133 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~ 133 (302)
+|++++|+||||||||||++.|+|... +..|.|.+.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV 250 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence 689999999999999999999999999 999999876
No 178
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.33 E-value=2.9e-06 Score=78.41 Aligned_cols=117 Identities=19% Similarity=0.132 Sum_probs=67.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccC-CCCeeecCCCCCHHHHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYN-DVPVISEKKITDPAAIAFNAI 174 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 174 (302)
+++|+++.|.||+|+||||++..++......+++|.+.+.+-..... ....++... ++. +.. .... ....+ +
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~--~a~~~g~~~~~l~-i~~--~~~~-e~~~~-~ 132 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLL-CSQ--PDTG-EQALE-I 132 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHTTCCGGGCE-EEC--CSSH-HHHHH-H
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH--HHHHcCCChhhee-eeC--CCCH-HHHHH-H
Confidence 56899999999999999999999998877777788877664321111 111221111 111 111 1122 12222 2
Q ss_pred HHHH--hCCCCeEEEcCCCCcc---------------ch----HHHHHHHHHHHHHhchhhccccc
Q psy2881 175 NIAQ--KKNTDIVIVDTSGRLS---------------TQ----SHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 175 a~al--~~~~~llllDEP~d~~---------------~~----~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
.+.+ ..++++|++|+++-.. .+ ...+..|..+++..+.+++++.|
T Consensus 133 ~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp HHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 2222 4689999999997111 11 12233344445666777777766
No 179
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.31 E-value=5.5e-06 Score=76.24 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=61.1
Q ss_pred CCe--EEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHH
Q psy2881 98 KPF--VIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAI 174 (302)
Q Consensus 98 ~g~--ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (302)
.+. .+.|.||+|+||||+++.+++.+.+. +..+...++..... ....+..+....+.+. ......... ..+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~l~~~~--~~~~~~~~~-~~~~l 116 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN-FTAIIGEIARSLNIPF--PRRGLSRDE-FLALL 116 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS-HHHHHHHHHHHTTCCC--CSSCCCHHH-HHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC-HHHHHHHHHHHhCccC--CCCCCCHHH-HHHHH
Confidence 445 89999999999999999999998876 34555444332221 1112222222223221 111112222 22222
Q ss_pred HHHH--hCCCCeEEEcCCC--CccchHHHHHHHHHHHHH--hchhhcccccee
Q psy2881 175 NIAQ--KKNTDIVIVDTSG--RLSTQSHLMRELKKIKKV--IEKKIFELPYEI 221 (302)
Q Consensus 175 a~al--~~~~~llllDEP~--d~~~~~~l~~~L~~l~~~--~~~~i~~~~hd~ 221 (302)
...+ ..+|.+|++||+. +......+...+..+... .+..+++++|+.
T Consensus 117 ~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 117 VEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 2222 2457899999996 333223333333222220 244556666654
No 180
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.28 E-value=7.2e-07 Score=73.30 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
.+|++++|+|||||||||+++.|++.+ |.+.+.+.+..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~ 44 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP 44 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc
Confidence 468999999999999999999999976 778887766543
No 181
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.27 E-value=1.1e-07 Score=83.68 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=36.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH---hHhhhCCCeEE--------EecccCC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLA---NYFKKRKKSVL--------LAACDTF 138 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~La---g~~~~~~g~V~--------l~~~d~~ 138 (302)
.+|++++|+|||||||||+++.|+ |+..++.|.+. ..|.+..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~ 77 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDIS 77 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcc
Confidence 678999999999999999999999 88888888887 6666553
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.26 E-value=2.7e-07 Score=85.20 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=28.2
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh--HhhhCCCeE
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN--YFKKRKKSV 130 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag--~~~~~~g~V 130 (302)
++++++++++ .++++|++||||||+++.|+| ++++..|.+
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 4556667765 799999999999999999999 445544533
No 183
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.26 E-value=3.5e-07 Score=77.83 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
++|++++|+|||||||||+++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999875
No 184
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.24 E-value=1.5e-06 Score=79.76 Aligned_cols=121 Identities=18% Similarity=0.200 Sum_probs=61.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeE-EEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSV-LLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFN 172 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V-~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (302)
..+..+.|.||+|+||||+++.+++.+.+. +..+ .+.+..... ....+..+....+.+.. ..+..... ..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~i~~~l~~~~~--~~~~~~~~-~~~ 117 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT--PYRVLADLLESLDVKVP--FTGLSIAE-LYR 117 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS--HHHHHHHHTTTTSCCCC--SSSCCHHH-HHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC--HHHHHHHHHHHhCCCCC--CCCCCHHH-HHH
Confidence 456789999999999999999999988764 3333 333322211 11223333333333211 11122222 222
Q ss_pred HHHHHHh--CCCCeEEEcCCC--CccchHHHHHHHHHHHH---Hhchhhccccceee
Q psy2881 173 AINIAQK--KNTDIVIVDTSG--RLSTQSHLMRELKKIKK---VIEKKIFELPYEIF 222 (302)
Q Consensus 173 ~la~al~--~~~~llllDEP~--d~~~~~~l~~~L~~l~~---~~~~~i~~~~hd~~ 222 (302)
.+..++. ..|.+|++||+. ........+..+.+..+ ..+..+++++|+..
T Consensus 118 ~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 118 RLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 2322332 238899999996 11111123333333332 22445666777553
No 185
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.24 E-value=9.3e-07 Score=74.12 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++|+|+||||||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 186
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.23 E-value=5.4e-07 Score=83.84 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=38.1
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l 132 (302)
..+++++++.+++|++++|+|||||||||+++.|++.+ +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 45667889999999999999999999999999999864 677665
No 187
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.21 E-value=6e-07 Score=87.52 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=35.8
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEeccc
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAACD 136 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~~d 136 (302)
.+.+|++++|+|+|||||||++++|++.+.+.+| ++.+.+.|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 3578999999999999999999999999999886 78644433
No 188
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.20 E-value=3.3e-06 Score=81.29 Aligned_cols=47 Identities=23% Similarity=0.199 Sum_probs=39.4
Q ss_pred ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT 137 (302)
Q Consensus 87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~ 137 (302)
..++++++.+++| ++|+||||+|||||++.|++... .+-+.+.+.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 3677888888877 89999999999999999999874 56788877654
No 189
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.19 E-value=8.3e-07 Score=75.21 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=26.5
Q ss_pred eecCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
+...+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3345799999999999999999999999875
No 190
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.19 E-value=6.9e-06 Score=70.83 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=36.1
Q ss_pred CCeE-EEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh
Q psy2881 98 KPFV-IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA 141 (302)
Q Consensus 98 ~g~i-i~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~ 141 (302)
+|+. +.+.|+.|+||||++..++..+...+.+|.+...|++...
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA 48 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence 4554 6678999999999999999988877779999988886433
No 191
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.18 E-value=1.4e-05 Score=73.19 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=69.7
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC-CCCCHHHHHHHH
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK-KITDPAAIAFNA 173 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 173 (302)
-+.+|+++.|.|++|+||||++..+|......++.|.+...+......... ..+...+++..... ..........-.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~R--lls~~~~v~~~~l~~g~Ls~~e~~~l~ 119 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALR--ALSDLTSINMHDLESGRLDDDQWENLA 119 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHH--HHHHHHCCCHHHHHHTCCCHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHH--HHHHhhCCCHHHHhcCCCCHHHHHHHH
Confidence 367999999999999999999999999887788899998876542221111 11222222221100 011221111111
Q ss_pred HHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHh-chhhcccc
Q psy2881 174 INIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVI-EKKIFELP 218 (302)
Q Consensus 174 la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~-~~~i~~~~ 218 (302)
.|...+.++++.+.|+|+- +-..+...++++.+.. +..++++-
T Consensus 120 ~a~~~l~~~~l~I~d~~~~--si~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 120 KCFDHLSQKKLFFYDKSYV--RIEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp HHHHHHHHSCEEEECCTTC--CHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHhcCCeEEeCCCCC--cHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2233445678888888862 2445666777776654 44444443
No 192
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.16 E-value=5.3e-07 Score=87.93 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=37.0
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA 134 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~ 134 (302)
+.++++++ +|++++|+||||+||||+++.|++.+.+..+.|.+.+
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 34556666 7899999999999999999999999987767766544
No 193
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=98.15 E-value=3.4e-05 Score=67.35 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=34.3
Q ss_pred CeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 99 PFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 99 g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+.++++++ ..|+||||+...||..+...+.+|.+.+.|..
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 35677764 77999999999999999888889999999975
No 194
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.13 E-value=3.2e-07 Score=80.67 Aligned_cols=38 Identities=24% Similarity=0.160 Sum_probs=34.6
Q ss_pred ccCCCcceecCC---CeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 87 SLEKPLIFKKCK---PFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 87 ~~l~~i~l~~~~---g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
++++++||++.+ |++++|+|++||||||+.+.|++.+.
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467889999998 99999999999999999999999763
No 195
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=98.13 E-value=3.9e-05 Score=68.79 Aligned_cols=43 Identities=33% Similarity=0.452 Sum_probs=38.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
.++.++++.|..|+||||+...||..+...+.+|.+.+.|.+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4678999999999999999999999999888899999999754
No 196
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.12 E-value=1.8e-05 Score=71.69 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=36.5
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT 137 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~ 137 (302)
-+.+|+++.|.|++|+||||++..++......+..|.+.+.+.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3689999999999999999999999877665667888887664
No 197
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.11 E-value=4.7e-06 Score=75.58 Aligned_cols=170 Identities=12% Similarity=0.132 Sum_probs=91.5
Q ss_pred HHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcc----eecCCCeEEEEEcCCCCCHHHHHH
Q psy2881 42 LKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLI----FKKCKPFVIMIVGVNGVGKTTTIG 117 (302)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~----l~~~~g~ii~lvGpnGsGKTTll~ 117 (302)
...+++.+-+.++++..++.+.. ...+...+.+.... ...+..-...++ --+++|+++.|.||+|+||||++.
T Consensus 40 ~~~gis~~~a~~~i~~a~~~~~~-~~~~~~~~~~~~~~--~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 40 DIEGISEKAAAKMIMGARDLCDL-GFKSGIDLLKQRST--VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp TSTTCCHHHHHHHHHHHHHHTTC-SCCCTHHHHHHHTT--CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred HhhCcCHHHHHHHHHHHHHhhhh-cCCcHHHHHHHhcc--CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 34799999999999988876532 33444444221000 001111111111 135789999999999999999999
Q ss_pred HHHhHh--hh----------CC----CeEEEecccC-CChhHHHHHHHhcccCCCC--------eeecCCCCCHHH--HH
Q psy2881 118 KLANYF--KK----------RK----KSVLLAACDT-FRAAAYEQLLILGKYNDVP--------VISEKKITDPAA--IA 170 (302)
Q Consensus 118 ~Lag~~--~~----------~~----g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~--------~~~~~~~~~~~~--~~ 170 (302)
.++.-. ++ .+ ++|.+.+.+- ++. +++..+.+..++. ++.... .... ..
T Consensus 117 ~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~---~~l~~~~~~~g~~~~~~~~~l~~~~~~--~~~~~~~~ 191 (322)
T 2i1q_A 117 QSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP---ERIMQMAEHAGIDGQTVLDNTFVARAY--NSDMQMLF 191 (322)
T ss_dssp HHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH---HHHHHHHHHHTCCHHHHHHTEEEEECS--SHHHHHHH
T ss_pred HHHHHHhccccccccccccccCCCCCceEEEEECCCCCCH---HHHHHHHHHcCCCHHHHhcCEEEEeCC--CHHHHHHH
Confidence 998643 21 22 5777766553 222 2232223333322 111111 2111 11
Q ss_pred HHHHHHHHh--CCCCeEEEcCCC---C--cc------c----hHHHHHHHHHHHHHhchhhccccc
Q psy2881 171 FNAINIAQK--KNTDIVIVDTSG---R--LS------T----QSHLMRELKKIKKVIEKKIFELPY 219 (302)
Q Consensus 171 ~~~la~al~--~~~~llllDEP~---d--~~------~----~~~l~~~L~~l~~~~~~~i~~~~h 219 (302)
.+.+...+. .++++|++|.-+ . .. . -..++..|..+++..+.+++++.|
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 122222222 578999999986 1 10 1 134555666777777777776665
No 198
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.11 E-value=2.6e-06 Score=70.77 Aligned_cols=41 Identities=32% Similarity=0.406 Sum_probs=35.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
..+|.++.|+|++||||||+++.|+..+.+.++++.+.+.|
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 45789999999999999999999999999888888766543
No 199
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.10 E-value=2.9e-06 Score=72.53 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
.+..+.|.||+|+||||+++.++..+...+..+.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 46789999999999999999999988876666666554
No 200
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.09 E-value=2.8e-06 Score=71.43 Aligned_cols=36 Identities=33% Similarity=0.391 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
..+.|.||+|+||||+++.++..+...+..+.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 678899999999999999999998877777776543
No 201
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.09 E-value=1e-05 Score=80.64 Aligned_cols=44 Identities=25% Similarity=0.166 Sum_probs=33.2
Q ss_pred ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccC
Q psy2881 93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDT 137 (302)
Q Consensus 93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~ 137 (302)
++++.++..++|+|++|+|||||++.|++...+ ..|+| ..+.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc
Confidence 345678899999999999999999999987764 56777 344433
No 202
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.07 E-value=2.1e-06 Score=79.37 Aligned_cols=33 Identities=27% Similarity=0.169 Sum_probs=30.1
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag 121 (302)
.++++++++.+| +++|+|||||||||++..|++
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 356789999888 999999999999999999997
No 203
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.07 E-value=3.8e-05 Score=72.86 Aligned_cols=42 Identities=14% Similarity=0.009 Sum_probs=35.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccC
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDT 137 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~ 137 (302)
+.+|+++.|.|++|+||||++..++..... .+..|.+.+...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 679999999999999999999999988775 456788877654
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.06 E-value=3.7e-06 Score=79.82 Aligned_cols=100 Identities=20% Similarity=0.313 Sum_probs=59.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhC--CCeEEEecccCCChhHHHHH-HHhcccCCCCeeecCCCCCHHHHHHHHHH
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACDTFRAAAYEQL-LILGKYNDVPVISEKKITDPAAIAFNAIN 175 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~--~g~V~l~~~d~~~~~~~~ql-~~~~~~~~~~~~~~~~~~~~~~~~~~~la 175 (302)
+..+.|.||+|+|||||++.|++.+... +..+.+.+...+ ...+ ..+.. ... ..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~----~~~~~~~~~~------------~~~-----~~~~ 188 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF----LNDLVDSMKE------------GKL-----NEFR 188 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH----HHHHHHHHHT------------TCH-----HHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH----HHHHHHHHHc------------ccH-----HHHH
Confidence 4568899999999999999999988644 455555443211 1111 11100 001 1122
Q ss_pred HHHhCCCCeEEEcCCC---C-ccchHHHHHHHHHHHHHhchhhccccce
Q psy2881 176 IAQKKNTDIVIVDTSG---R-LSTQSHLMRELKKIKKVIEKKIFELPYE 220 (302)
Q Consensus 176 ~al~~~~~llllDEP~---d-~~~~~~l~~~L~~l~~~~~~~i~~~~hd 220 (302)
..+..++++|++||+. + ...+..++..+..+.+ .+..+++++|+
T Consensus 189 ~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~ 236 (440)
T 2z4s_A 189 EKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDR 236 (440)
T ss_dssp HHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESS
T ss_pred HHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence 2232389999999996 2 1455667677666643 35667777775
No 205
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.05 E-value=8.3e-06 Score=70.55 Aligned_cols=46 Identities=22% Similarity=0.170 Sum_probs=34.0
Q ss_pred CCCcceecC---CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 89 EKPLIFKKC---KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 89 l~~i~l~~~---~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
+.+.++.+. +|.+++|.||+||||||+++.|+..+.+ ++.+.....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 61 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTRE 61 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecC
Confidence 344555554 8999999999999999999999999988 778865543
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.05 E-value=1.4e-07 Score=86.30 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHh----hhCCCeEE
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYF----KKRKKSVL 131 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~----~~~~g~V~ 131 (302)
.+.++|+||||+|||||++.|++.+ .+.+|.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 3689999999999999999999998 44445443
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.05 E-value=2.1e-05 Score=68.62 Aligned_cols=95 Identities=21% Similarity=0.191 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhh-ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHh
Q psy2881 71 EQVRNVLHNLLVNLLK-SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL 149 (302)
Q Consensus 71 ~~~~~~l~~~l~~~l~-~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~ 149 (302)
+.+++.+.+.+...-. ..++++++..++| +.|+||+|+||||+++.|++.+.. --+.+.+.+....
T Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~--~~~~i~~~~~~~~--------- 84 (257)
T 1lv7_A 18 DEAKEEVAELVEYLREPSRFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV--PFFTISGSDFVEM--------- 84 (257)
T ss_dssp HHHHHHTHHHHHHHHCGGGC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC--CEEEECSCSSTTS---------
T ss_pred HHHHHHHHHHHHHHhCHHHHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC--CEEEEeHHHHHHH---------
Confidence 4444545443332111 2344444544444 889999999999999999998642 1244444433210
Q ss_pred cccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 150 GKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
.. +.. .......+..+....|.++++||.
T Consensus 85 --~~---------~~~-~~~~~~~~~~a~~~~~~il~iDei 113 (257)
T 1lv7_A 85 --FV---------GVG-ASRVRDMFEQAKKAAPCIIFIDEI 113 (257)
T ss_dssp --CC---------CCC-HHHHHHHHHHHHTTCSEEEEETTH
T ss_pred --hh---------hhh-HHHHHHHHHHHHHcCCeeehhhhh
Confidence 00 011 122233444555566889999997
No 208
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.05 E-value=9.9e-06 Score=69.89 Aligned_cols=116 Identities=12% Similarity=0.059 Sum_probs=68.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--ccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--CDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAI 174 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (302)
.+|.++.+.||.|+||||++..++..+...+.+|.+.. .|. + +. .....+.++........ ... ...+.+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~~----~~i~srlG~~~~~~~~~-~~~-~i~~~i 81 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-SI----RNIQSRTGTSLPSVEVE-SAP-EILNYI 81 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-GC----SSCCCCCCCSSCCEEES-STH-HHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-HH----HHHHHhcCCCccccccC-CHH-HHHHHH
Confidence 46899999999999999999888888877777888773 221 2 11 12234444332111111 111 121211
Q ss_pred HHHH-hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 175 NIAQ-KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 175 a~al-~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.... ..++++|++||.-.... .+.+.+..+.+. +..++++-|+..+
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~--~~ve~l~~L~~~-gi~Vil~Gl~~df 128 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDD--RICEVANILAEN-GFVVIISGLDKNF 128 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCT--HHHHHHHHHHHT-TCEEEEECCSBCT
T ss_pred HHHhhCCCCCEEEEecCccCcH--HHHHHHHHHHhC-CCeEEEEeccccc
Confidence 1111 13599999999963222 255666776654 7777777787665
No 209
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.04 E-value=3.7e-05 Score=66.30 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=64.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC-----CeEEEecccCCChhHHHHHHHhcccCCCC----ee------ecC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRK-----KSVLLAACDTFRAAAYEQLLILGKYNDVP----VI------SEK 161 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~-----g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~------~~~ 161 (302)
..|+.++++|||||||||++..+........ ..+.+. .+.+..+.+....+....+.. .- ...
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~--~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~ 151 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVT--QPRRISAVSVAERVAFERGEEPGKSCGYSVRFESIL 151 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEE--ESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEEC
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEe--ccchHHHHHHHHHHHHHhccccCceEEEeechhhcc
Confidence 4688999999999999998877654332211 134332 334444433333333222211 10 000
Q ss_pred --CC-----CCHHHHHHHHHHHHHhCCCCeEEEcCCCCc-cchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhH
Q psy2881 162 --KI-----TDPAAIAFNAINIAQKKNTDIVIVDTSGRL-STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNT 233 (302)
Q Consensus 162 --~~-----~~~~~~~~~~la~al~~~~~llllDEP~d~-~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~ 233 (302)
.. ..+. ...+.+ .....+.++|++||+-.. .........++.+.... ++-..++++|+...+.
T Consensus 152 ~~~~~~Ivv~Tpg-~l~~~l-~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-------~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 152 PRPHASIMFCTVG-VLLRKL-EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-------PEVRIVLMSATIDTSM 222 (235)
T ss_dssp CCSSSEEEEEEHH-HHHHHH-HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-------TTSEEEEEECSSCCHH
T ss_pred CCCCCeEEEECHH-HHHHHH-HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-------CCCeEEEEecCCCHHH
Confidence 00 0122 222222 224688999999999632 33333335555554431 2333566777765543
No 210
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.03 E-value=2.3e-05 Score=72.54 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=36.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT 137 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~ 137 (302)
+++|+++.|.||+|+||||++..++......++.|.+.+.+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 468999999999999999999999887777778898887764
No 211
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=98.03 E-value=5.3e-05 Score=68.11 Aligned_cols=148 Identities=19% Similarity=0.241 Sum_probs=83.1
Q ss_pred CCCeEEEEEcC-CCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH---------Hhc---------c---cCC
Q psy2881 97 CKPFVIMIVGV-NGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL---------ILG---------K---YND 154 (302)
Q Consensus 97 ~~g~ii~lvGp-nGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~---------~~~---------~---~~~ 154 (302)
.++.++++.|+ .|+||||+...||..+...+.+|.+.+.|..+......+. .+. . ..+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 181 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 181 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCC
Confidence 35679999997 5999999999999999888889999999985433221111 000 0 012
Q ss_pred CCeeecCC-CCCHHH-----HHHHHHHHHHhCCCCeEEEcCCCCcc-chHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 155 VPVISEKK-ITDPAA-----IAFNAINIAQKKNTDIVIVDTSGRLS-TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 155 ~~~~~~~~-~~~~~~-----~~~~~la~al~~~~~llllDEP~d~~-~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+.++.... ...+.+ ...+.+. .+..++|+||+|+|+... ....+ +.. ....+.+|..+
T Consensus 182 l~vl~~g~~~~~~~ell~~~~l~~ll~-~l~~~yD~VIIDtpp~~~~~d~~~------l~~--------~ad~vilV~~~ 246 (299)
T 3cio_A 182 FDVITRGQVPPNPSELLMRDRMRQLLE-WANDHYDLVIVDTPPMLAVSDAAV------VGR--------SVGTSLLVARF 246 (299)
T ss_dssp EEEECCCSCCSCHHHHHTSHHHHHHHH-HHHHHCSEEEEECCCTTTCTHHHH------HGG--------GCSEEEEEEET
T ss_pred EEEEECCCCCCCHHHHhCHHHHHHHHH-HHHhCCCEEEEcCCCCchhHHHHH------HHH--------HCCEEEEEEcC
Confidence 22332211 122221 1223333 344679999999997322 22111 111 12334455555
Q ss_pred CCCh-hHHHHH-HHHHh-hcCCCeEEEecCCCCCc
Q psy2881 228 NTGQ-NTLSQI-KEFSK-ILRITGLIITKLDGTTK 259 (302)
Q Consensus 228 ~~g~-~~~~~~-~~f~~-~~~~~~~i~tk~d~~~~ 259 (302)
+... ..+... +.+.. ..++-++|+|+.+....
T Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~~ 281 (299)
T 3cio_A 247 GLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRAS 281 (299)
T ss_dssp TTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCCCS
T ss_pred CCChHHHHHHHHHHHHhCCCCeEEEEEeCCccCCC
Confidence 4332 344333 34432 34567899999997644
No 212
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=98.02 E-value=3.5e-05 Score=66.34 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=36.4
Q ss_pred CCeEEEEEc-CCCCCHHHHHHHHHhHhhhC-CCeEEEecccCC
Q psy2881 98 KPFVIMIVG-VNGVGKTTTIGKLANYFKKR-KKSVLLAACDTF 138 (302)
Q Consensus 98 ~g~ii~lvG-pnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~ 138 (302)
++.++++.+ ..|+||||+...||..+... +.+|.+.+.|.+
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 568899986 56899999999999999887 889999999976
No 213
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.02 E-value=8.3e-06 Score=72.97 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT 137 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~ 137 (302)
+...+.|+||+|+||||+++.|++.+.+.++.+...++..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 4468999999999999999999999988777766665543
No 214
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.01 E-value=7.7e-06 Score=78.82 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=39.7
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHh--HhhhCCCeEEEecccCCC
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN--YFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag--~~~~~~g~V~l~~~d~~~ 139 (302)
.+.+++.++..++|.|++||||||+++.|.. ++..+.+.|.+...|...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 4677788888899999999999999999876 344566888888888654
No 215
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=98.01 E-value=4.5e-05 Score=67.62 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=38.3
Q ss_pred CCCeEEEEEcC-CCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh
Q psy2881 97 CKPFVIMIVGV-NGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA 140 (302)
Q Consensus 97 ~~g~ii~lvGp-nGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~ 140 (302)
.++.++++.|+ .|+||||+...||..+...+.+|.+.+.|..+.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~ 124 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKP 124 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Confidence 35679999986 689999999999999998888999999998653
No 216
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.01 E-value=2.5e-06 Score=69.73 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
.|.+++|+|||||||||+++.|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999875
No 217
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.00 E-value=6.2e-06 Score=74.62 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
.+..+.|.||+|+||||+++.++..+.+.+..+.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 34568899999999999999999998876666666543
No 218
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.00 E-value=2.5e-05 Score=67.28 Aligned_cols=125 Identities=9% Similarity=0.078 Sum_probs=72.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhH-hhhCCCeEEEecccCCChhHHHHHHHhcc-------cCCCCee---------
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANY-FKKRKKSVLLAACDTFRAAAYEQLLILGK-------YNDVPVI--------- 158 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~-~~~~~g~V~l~~~d~~~~~~~~ql~~~~~-------~~~~~~~--------- 158 (302)
+++|+++.|.|++|+||||++-.++.- ....++.|.+...+.......+.+..+.. ...+.+.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 106 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhc
Confidence 578999999999999999999877654 33446678887665432111111111100 0000000
Q ss_pred ------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-------CccchHHHHHHHHHHHHHhchhhccccce
Q psy2881 159 ------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-------RLSTQSHLMRELKKIKKVIEKKIFELPYE 220 (302)
Q Consensus 159 ------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-------d~~~~~~l~~~L~~l~~~~~~~i~~~~hd 220 (302)
......................+++++++|.-. +......++..|..+++..+.++++++|-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~ 181 (251)
T 2zts_A 107 PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred ccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 000011111222222223345789999999653 45556678888888888888888777763
No 219
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.99 E-value=7.1e-05 Score=65.58 Aligned_cols=43 Identities=37% Similarity=0.465 Sum_probs=36.6
Q ss_pred cCCCeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 96 KCKPFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 96 ~~~g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
-.++.++++.+ ..|+||||+...||..+. .+.+|.+.+.|.+.
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 35678999975 668999999999999999 88899999999875
No 220
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.98 E-value=8.7e-05 Score=64.98 Aligned_cols=40 Identities=28% Similarity=0.479 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
.++++.|..|+||||+...||..+...+.+|.+.+.|.+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 4677889999999999999999999888899999999764
No 221
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.97 E-value=6.6e-06 Score=67.85 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEec
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAA 134 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~ 134 (302)
.+|.+++|+|++||||||+++.|++.+.+.+- .+.+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 46899999999999999999999999887432 344443
No 222
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.96 E-value=3.5e-06 Score=68.09 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=41.5
Q ss_pred HHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881 174 INIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF 222 (302)
Q Consensus 174 la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~ 222 (302)
+|++++.+|+++|+|||+ |+.....+.+.+.++.+. +.+++++|||..
T Consensus 74 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~ 124 (148)
T 1f2t_B 74 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE 124 (148)
T ss_dssp HHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG
T ss_pred HHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH
Confidence 568999999999999997 888888899999887653 778999999873
No 223
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.96 E-value=3.4e-06 Score=78.81 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=34.2
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHh------------HhhhCCCeEEEec
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLAN------------YFKKRKKSVLLAA 134 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag------------~~~~~~g~V~l~~ 134 (302)
.+.+|..++|+|+||||||||++.|+| ...|+.|.|.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 457899999999999999999999999 4457778888765
No 224
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.96 E-value=5.7e-06 Score=69.85 Aligned_cols=40 Identities=30% Similarity=0.368 Sum_probs=31.7
Q ss_pred eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT 137 (302)
Q Consensus 94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~ 137 (302)
-++.+|.+++|+|++||||||+++.|++.+. + +.+...|.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~---~-~~~i~~D~ 55 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP---N-CSVISQDD 55 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST---T-EEEEEGGG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC---C-cEEEeCCc
Confidence 3467899999999999999999999999763 2 44555553
No 225
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.93 E-value=5e-06 Score=78.54 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=29.0
Q ss_pred eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC
Q psy2881 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK 127 (302)
Q Consensus 94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~ 127 (302)
+++.+|++++|+|||||||||++..|++++.+.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 5566789999999999999999999999987654
No 226
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.93 E-value=5.2e-06 Score=70.52 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=33.1
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC--eEEEe
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK--SVLLA 133 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g--~V~l~ 133 (302)
.+.+|.+++|+|++||||||+++.|++.+.|..| .+.+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3467999999999999999999999999986666 55554
No 227
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.92 E-value=0.00011 Score=65.58 Aligned_cols=148 Identities=20% Similarity=0.278 Sum_probs=84.3
Q ss_pred CCCeEEEEEcC-CCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH---------hccc------------CC
Q psy2881 97 CKPFVIMIVGV-NGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI---------LGKY------------ND 154 (302)
Q Consensus 97 ~~g~ii~lvGp-nGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~---------~~~~------------~~ 154 (302)
.++.++++.|+ .|+||||+...||..+...+.+|.+.+.|..+......+.. +... .+
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 169 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAK 169 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCC
Confidence 35689999986 58999999999999999888899999999875433222110 0000 11
Q ss_pred CCeeecCC-CCCHHH-----HHHHHHHHHHhCCCCeEEEcCCCCcc-chHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881 155 VPVISEKK-ITDPAA-----IAFNAINIAQKKNTDIVIVDTSGRLS-TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG 227 (302)
Q Consensus 155 ~~~~~~~~-~~~~~~-----~~~~~la~al~~~~~llllDEP~d~~-~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~ 227 (302)
+.++.... ...+.+ ...+.+ ..+..++|+||+|+|.... ..... +. -...-+.+|..+
T Consensus 170 l~vl~~g~~~~~~~ell~~~~l~~ll-~~l~~~yD~VIIDtpp~~~~~da~~------l~--------~~aD~vllVv~~ 234 (286)
T 3la6_A 170 FDLIPRGQVPPNPSELLMSERFAELV-NWASKNYDLVLIDTPPILAVTDAAI------VG--------RHVGTTLMVARY 234 (286)
T ss_dssp EEEECCCSCCSCHHHHHTSHHHHHHH-HHHHHHCSEEEEECCCTTTCTHHHH------HT--------TTCSEEEEEEET
T ss_pred EEEEeCCCCCCCHHHHhchHHHHHHH-HHHHhCCCEEEEcCCCCcchHHHHH------HH--------HHCCeEEEEEeC
Confidence 22222211 112222 122223 3345679999999997322 21111 11 112345566666
Q ss_pred CCCh-hHHHHH-HHHHh-hcCCCeEEEecCCCCCc
Q psy2881 228 NTGQ-NTLSQI-KEFSK-ILRITGLIITKLDGTTK 259 (302)
Q Consensus 228 ~~g~-~~~~~~-~~f~~-~~~~~~~i~tk~d~~~~ 259 (302)
+... ..+... +.+.. ..++-++|+|+++....
T Consensus 235 ~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 235 AVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp TTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 5433 444443 34432 24567999999987543
No 228
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.91 E-value=8.3e-05 Score=63.70 Aligned_cols=40 Identities=33% Similarity=0.361 Sum_probs=34.7
Q ss_pred CeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 99 PFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 99 g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+.++++.+ ..|+||||+...||..+...+.+|.+.+.|..
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 46788876 56999999999999999888889999999975
No 229
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.91 E-value=5.3e-06 Score=84.13 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=63.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCChhHHHHHHHhcccCCCCe----e------ecCCC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRAAAYEQLLILGKYNDVPV----I------SEKKI 163 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~----~------~~~~~ 163 (302)
..|+.+.++|||||||||++..++....+. ++.|.+. . +.+..+.++...+.+..+..+ - .....
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl-~-P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~ 184 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT-Q-PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSN 184 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE-E-SCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCT
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec-C-chHHHHHHHHHHHHHHhCCchhheecceeccccccCC
Confidence 457899999999999999988886655433 3345543 2 334444444333433333211 0 00000
Q ss_pred ------CCHHHHHHHHHHHHHhCCCCeEEEcCCC-CccchHHHHHHHHHHHH
Q psy2881 164 ------TDPAAIAFNAINIAQKKNTDIVIVDTSG-RLSTQSHLMRELKKIKK 208 (302)
Q Consensus 164 ------~~~~~~~~~~la~al~~~~~llllDEP~-d~~~~~~l~~~L~~l~~ 208 (302)
..+.......++..+..++++||+|||. +.-....++..++.+..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~ 236 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVK 236 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHH
Confidence 0133334444555678899999999997 34444445556666544
No 230
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.90 E-value=1.9e-05 Score=70.88 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=47.3
Q ss_pred eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHH
Q psy2881 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNA 173 (302)
Q Consensus 94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (302)
+.+.++..+.|.||+|+||||+++.|++.+. .+-+.+.+.+. ...|. + .. .. .....
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l--------~~~~~---g------~~-~~---~~~~~ 100 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL--------LTMWF---G------ES-EA---NVREI 100 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHH--------HHHHH---T------TC-TT---HHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHH--------Hhhhc---C------ch-HH---HHHHH
Confidence 4456788899999999999999999999763 23344433221 11111 0 00 01 12234
Q ss_pred HHHHHhCCCCeEEEcCCC
Q psy2881 174 INIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 174 la~al~~~~~llllDEP~ 191 (302)
+..+....|.+|++||..
T Consensus 101 f~~a~~~~p~il~iDEid 118 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELD 118 (301)
T ss_dssp HHHHHHTCSEEEEECSTT
T ss_pred HHHHHhcCCeEEEEEChH
Confidence 555666789999999974
No 231
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.89 E-value=8.8e-06 Score=71.90 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
-.++|+|++|||||||++.|+|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 232
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.88 E-value=2.9e-05 Score=69.25 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=36.8
Q ss_pred CeEEEEEc---CCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh
Q psy2881 99 PFVIMIVG---VNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA 140 (302)
Q Consensus 99 g~ii~lvG---pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~ 140 (302)
+.+++|.+ ..|+||||+...||..+...+.+|.+.+.|++..
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~ 78 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQAT 78 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 56788886 8899999999999999988888999999998753
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.88 E-value=1.1e-05 Score=82.28 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHh
Q psy2881 72 QVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL 149 (302)
Q Consensus 72 ~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~ 149 (302)
...+.+.+.+...+. ..++ ++.+.+|+.++|+||+|+||||+++.|++.+... -+.+.+.++..
T Consensus 211 ~~~~~l~e~i~~~l~~~~~~~--~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~---------- 276 (806)
T 1ypw_A 211 KQLAQIKEMVELPLRHPALFK--AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMS---------- 276 (806)
T ss_dssp GGGGHHHHHHHHHHHCGGGGT--SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSS----------
T ss_pred HHHHHHHHHHHHHhhCHHHHH--hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhh----------
Confidence 334445555544332 2333 4567788999999999999999999999987432 24554433211
Q ss_pred cccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 150 GKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
....+........+..+....|.++++||.
T Consensus 277 -----------~~~g~~~~~l~~vf~~a~~~~p~il~iDEi 306 (806)
T 1ypw_A 277 -----------KLAGESESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp -----------SSTTHHHHHHHHHHHHHHHHCSEEEEEESG
T ss_pred -----------hhhhhHHHHHHHHHHHHHhcCCcEEEeccH
Confidence 000112223334455556667999999998
No 234
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.88 E-value=6.3e-05 Score=64.85 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKR 126 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~ 126 (302)
-.++|+|++|||||||++.|+|...+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~ 56 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFH 56 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCc
Confidence 368999999999999999999865433
No 235
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.88 E-value=0.00034 Score=61.17 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=36.8
Q ss_pred CeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh
Q psy2881 99 PFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA 141 (302)
Q Consensus 99 g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~ 141 (302)
+.++++.+ ..|+||||+...||..+...+.+|.+.+.|.+...
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~ 61 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPS 61 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 56888875 66899999999999999888889999999987643
No 236
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.88 E-value=2.6e-05 Score=66.05 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCC----CCCHHHHHHHHHH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKK----ITDPAAIAFNAIN 175 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~----~~~~~~~~~~~la 175 (302)
.+++|+|+.||||||+++.|++..... .++.+.+.|+........+. ..+.++..... .... ....+.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 104 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVR----RFGIKAEAISTGKECHLDA-HMIYHRLK 104 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHH----TTTCEEEECCCTTCSSCCH-HHHHTTGG
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHH----hCCCcEEEecCCceeeccc-HHHHHHHH
Confidence 579999999999999999999886544 67877777775422222222 11222222111 1111 11112222
Q ss_pred HHHhCCCCeEEEcCCC--CccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH-HHHHHhhcCCCeEEEe
Q psy2881 176 IAQKKNTDIVIVDTSG--RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ-IKEFSKILRITGLIIT 252 (302)
Q Consensus 176 ~al~~~~~llllDEP~--d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~-~~~f~~~~~~~~~i~t 252 (302)
...+++++++|+|| +.+... -...+...+|++++.+...... ...+ . .+..+++|
T Consensus 105 --~~~~~d~iiidt~G~~~~~~~~-----------------~~~~~~~i~vvd~~~~~~~~~~~~~~~--~-~~~iiv~N 162 (221)
T 2wsm_A 105 --KFSDCDLLLIENVGNLICPVDF-----------------DLGENYRVVMVSVTEGDDVVEKHPEIF--R-VADLIVIN 162 (221)
T ss_dssp --GGTTCSEEEEEEEEBSSGGGGC-----------------CCSCSEEEEEEEGGGCTTHHHHCHHHH--H-TCSEEEEE
T ss_pred --hcCCCCEEEEeCCCCCCCCchh-----------------ccccCcEEEEEeCCCcchhhhhhhhhh--h-cCCEEEEe
Confidence 34679999999998 322110 0123445666776655422211 1222 1 23578999
Q ss_pred cCCCCC----chhHHHHhhhHhC--CceEEEec
Q psy2881 253 KLDGTT----KGGILAAIAKKYS--IPLYFIGI 279 (302)
Q Consensus 253 k~d~~~----~~g~~~~~~~~~~--~pv~~~~~ 279 (302)
|.|... ....+...+...+ .|+.+++.
T Consensus 163 K~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa 195 (221)
T 2wsm_A 163 KVALAEAVGADVEKMKADAKLINPRAKIIEMDL 195 (221)
T ss_dssp CGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBT
T ss_pred cccCCcchhhHHHHHHHHHHHhCCCCeEEEeec
Confidence 999632 2334444444443 56655543
No 237
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.86 E-value=1.5e-05 Score=71.39 Aligned_cols=42 Identities=31% Similarity=0.401 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC---CeEEEecccCC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRK---KSVLLAACDTF 138 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~---g~V~l~~~d~~ 138 (302)
.++.+++|+||+||||||+++.|++++.+.+ ..+.+...|.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 5689999999999999999999999998642 23445355543
No 238
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.86 E-value=6.2e-05 Score=66.47 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=44.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-EecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-LAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAIN 175 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la 175 (302)
.++.-+.|.||+|+||||+++.++..+. ..+. +...+.... ............+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~---~~~~~v~~~~~~~~---------------------~~~~~~~~~~~~~~ 104 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN---ATFIRVVGSELVKK---------------------FIGEGASLVKDIFK 104 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT---CEEEEEEGGGGCCC---------------------STTHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEehHHHHHh---------------------ccchHHHHHHHHHH
Confidence 4566799999999999999999998753 2232 222221100 00112223334455
Q ss_pred HHHhCCCCeEEEcCCC
Q psy2881 176 IAQKKNTDIVIVDTSG 191 (302)
Q Consensus 176 ~al~~~~~llllDEP~ 191 (302)
.+....|.+|++||..
T Consensus 105 ~~~~~~~~vl~iDEid 120 (285)
T 3h4m_A 105 LAKEKAPSIIFIDEID 120 (285)
T ss_dssp HHHHTCSEEEEEETTH
T ss_pred HHHHcCCeEEEEECHH
Confidence 6667789999999983
No 239
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.84 E-value=3.2e-05 Score=65.06 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=64.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--ccCCChhHHHHHHHhcccCCCCe--eecCCCCCHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--CDTFRAAAYEQLLILGKYNDVPV--ISEKKITDPAAIAFN 172 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--~d~~~~~~~~ql~~~~~~~~~~~--~~~~~~~~~~~~~~~ 172 (302)
.+|.++.+.||-||||||.+-.++..+...+.+|.+.. .|. |.+. .....+.++.. ...... . +
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~~----~~i~s~~g~~~~a~~~~~~-~------~ 73 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYSK----EDVVSHMGEKEQAVAIKNS-R------E 73 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC------------CEEECTTSCEEECEEESSS-T------H
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cchH----HHHHhhcCCceeeEeeCCH-H------H
Confidence 56899999999999999999999988887788888874 232 2110 11222333321 111111 1 1
Q ss_pred HHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 173 AINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 173 ~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+. .+..++++|++||..... ...++.++.+.+. +..+++..++..+
T Consensus 74 i~~-~~~~~~dvViIDEaqfl~--~~~v~~l~~l~~~-~~~Vi~~Gl~~df 120 (191)
T 1xx6_A 74 ILK-YFEEDTEVIAIDEVQFFD--DEIVEIVNKIAES-GRRVICAGLDMDF 120 (191)
T ss_dssp HHH-HCCTTCSEEEECSGGGSC--THHHHHHHHHHHT-TCEEEEEECSBCT
T ss_pred HHH-HHhccCCEEEEECCCCCC--HHHHHHHHHHHhC-CCEEEEEeccccc
Confidence 121 112358999999986322 1236677777654 5566665665543
No 240
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.84 E-value=3.5e-06 Score=71.96 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHh---hhCCCeEEE
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYF---KKRKKSVLL 132 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~---~~~~g~V~l 132 (302)
+.+++|+||+||||||+++.|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999987 455555554
No 241
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.82 E-value=1.3e-05 Score=64.67 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=25.6
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+..+++.+ .+.+|+|||||||||++..|...+
T Consensus 16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence 44555554 599999999999999999998654
No 242
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.81 E-value=5.2e-05 Score=67.41 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=45.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE-EEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV-LLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI 176 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V-~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 176 (302)
++..+.|.||+|+||||+++.+++.+. ... .+...+... .............+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~~l~~---------------------~~~~~~~~~~~~~~~~ 108 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS---ATFLNISAASLTS---------------------KYVGDGEKLVRALFAV 108 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT---CEEEEEESTTTSS---------------------SSCSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC---CCeEEeeHHHHhh---------------------cccchHHHHHHHHHHH
Confidence 467889999999999999999998763 222 222222110 0001223334445666
Q ss_pred HHhCCCCeEEEcCCC
Q psy2881 177 AQKKNTDIVIVDTSG 191 (302)
Q Consensus 177 al~~~~~llllDEP~ 191 (302)
+...+|.+|++||+.
T Consensus 109 ~~~~~~~vl~iDEid 123 (297)
T 3b9p_A 109 ARHMQPSIIFIDEVD 123 (297)
T ss_dssp HHHTCSEEEEEETGG
T ss_pred HHHcCCcEEEeccHH
Confidence 677889999999994
No 243
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.79 E-value=0.00013 Score=62.67 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=33.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 102 i~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+++.|..|+||||+...||..+...+.+|.+.+.|.+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5668999999999999999999988899999999985
No 244
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.79 E-value=0.00049 Score=58.21 Aligned_cols=144 Identities=21% Similarity=0.207 Sum_probs=80.4
Q ss_pred EEEEE-cCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHh
Q psy2881 101 VIMIV-GVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQK 179 (302)
Q Consensus 101 ii~lv-GpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~ 179 (302)
++++. +..|+||||+...||..+...+ +|.+.+.|.+.... ..+.. .+ ....++.. + .+. .+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~-~~-l~~~vi~~----~-------~l~-~l~ 65 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR-GS-LPFKVVDE----R-------QAA-KYA 65 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH-SC-CSSEEEEG----G-------GHH-HHG
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC-CC-CCcceeCH----H-------HHH-Hhh
Confidence 56666 5779999999999999998777 99999999875322 22222 11 11111211 1 122 245
Q ss_pred CCCCeEEEcCCCC-ccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCCh-hHHHHH-HHHHh--hcCCCeEEEecC
Q psy2881 180 KNTDIVIVDTSGR-LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQ-NTLSQI-KEFSK--ILRITGLIITKL 254 (302)
Q Consensus 180 ~~~~llllDEP~d-~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~-~~~~~~-~~f~~--~~~~~~~i~tk~ 254 (302)
.++|++|+|+|+. .... ....+ . .++.+.++...+... ..+... +.+.. ..+ -++|+|+.
T Consensus 66 ~~yD~viiD~p~~~~~~~--~~~~l----~--------~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~ 130 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDED--LEALA----D--------GCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTII 130 (209)
T ss_dssp GGCSEEEEEEECCCSSSH--HHHHH----H--------TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSB
T ss_pred hcCCEEEEeCCCCcCcHH--HHHHH----H--------HCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEec
Confidence 7899999999975 3221 11111 1 123333444433211 222221 22322 123 36899999
Q ss_pred CCCC-c-hhHHHHhhhHhCCceE
Q psy2881 255 DGTT-K-GGILAAIAKKYSIPLY 275 (302)
Q Consensus 255 d~~~-~-~g~~~~~~~~~~~pv~ 275 (302)
+... . ...+.+.+.+++.|+.
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 131 PPYPSKDGDEARQLLTTAGLPLF 153 (209)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCBC
T ss_pred CCccchHHHHHHHHHHHcCCchh
Confidence 9864 3 4456666666787754
No 245
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.78 E-value=9.3e-05 Score=61.00 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.-.++++|+.||||||+++.+++.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999874
No 246
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.78 E-value=2.4e-05 Score=68.48 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 69 NTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 69 ~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+++++...+...+...+. +.. ...+|.++.|+||+||||||+.+.|+..+. .+.+.+.+ |..
T Consensus 7 ~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~-D~~ 68 (253)
T 2p5t_B 7 TDSEFKHALARNLRSLTR----GKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG-DSF 68 (253)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG-GGG
T ss_pred CHHHHHHHHHHHHHHHHc----cCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec-HHH
Confidence 344555545544333332 222 456789999999999999999999998764 24455544 443
No 247
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.76 E-value=0.00023 Score=68.37 Aligned_cols=42 Identities=24% Similarity=0.150 Sum_probs=35.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccC
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDT 137 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~ 137 (302)
+.+|+++.|.|++|+||||++..++...... +..|.+.+.+.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 6789999999999999999999998877654 66888887654
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.76 E-value=6.1e-05 Score=68.00 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=31.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecc
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAAC 135 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~ 135 (302)
+..+.|.||+|+|||+|+..|+..+. ..+.+|.+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 56788999999999999999999887 77777776543
No 249
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.75 E-value=0.00024 Score=61.54 Aligned_cols=72 Identities=19% Similarity=0.114 Sum_probs=43.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI 176 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 176 (302)
..+.-+.|.||+|+||||+++.++..+.. --+.+...+... . ............+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~~~~~~~~~~------------~---------~~~~~~~~~~~~~~~ 93 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQV--PFLAMAGAEFVE------------V---------IGGLGAARVRSLFKE 93 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC--CEEEEETTTTSS------------S---------STTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC--CEEEechHHHHh------------h---------ccChhHHHHHHHHHH
Confidence 44556889999999999999999987631 123333322210 0 001112223334555
Q ss_pred HHhCCCCeEEEcCCC
Q psy2881 177 AQKKNTDIVIVDTSG 191 (302)
Q Consensus 177 al~~~~~llllDEP~ 191 (302)
+....|.+|++||..
T Consensus 94 a~~~~~~vl~iDeid 108 (262)
T 2qz4_A 94 ARARAPCIVYIDEID 108 (262)
T ss_dssp HHHTCSEEEEEECC-
T ss_pred HHhcCCeEEEEeCcc
Confidence 566779999999995
No 250
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.74 E-value=2.8e-05 Score=64.42 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
.+++|+|++||||||+++.|++.+.+.+.+|.....+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 5899999999999999999999988776666555443
No 251
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.73 E-value=0.0001 Score=67.36 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
..+..+.|.||+|+||||+++.++..+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45668899999999999999999988754
No 252
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=97.73 E-value=0.0016 Score=55.08 Aligned_cols=35 Identities=20% Similarity=0.066 Sum_probs=29.9
Q ss_pred eEEEEEcC-CCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881 100 FVIMIVGV-NGVGKTTTIGKLANYFKKRKKSVLLAA 134 (302)
Q Consensus 100 ~ii~lvGp-nGsGKTTll~~Lag~~~~~~g~V~l~~ 134 (302)
.++++.|. .|+||||+...||..+...+.+|.+.+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 46788885 699999999999999988888998864
No 253
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.73 E-value=0.00057 Score=64.78 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=37.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+.+|+++.|.|++|+||||++..++......+..|.+...+..
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms 236 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 236 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 6799999999999999999999998877666778998876654
No 254
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.72 E-value=3.5e-05 Score=63.55 Aligned_cols=38 Identities=24% Similarity=0.115 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT 137 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~ 137 (302)
.+++|+|++||||||++..|+..+...+-+|.+...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 48999999999999999999999988777787766554
No 255
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.72 E-value=6.8e-06 Score=81.07 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=38.1
Q ss_pred CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC-CeEEEeccc
Q psy2881 90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK-KSVLLAACD 136 (302)
Q Consensus 90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~-g~V~l~~~d 136 (302)
+.+++.+..|+.++|+||||+||||+++.|++++.+.. |.+.+.+..
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 34556667889999999999999999999999998776 666665544
No 256
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.70 E-value=8.7e-05 Score=66.29 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 69 NTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 69 ~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+++++...+.+.+...+... .....|.++.|.||+||||||+.+.|+..+. .+.+.+. .|.+
T Consensus 8 s~~~~~~~~~~~~~~~l~~~-----~~~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is-~D~~ 69 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGK-----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID-NDTF 69 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-----CCCSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC-THHH
T ss_pred CHHHHHHHHHHHHHHHhccc-----cCCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe-chHh
Confidence 55777777777777776532 2235688999999999999999999987653 3445544 4544
No 257
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.69 E-value=9.6e-05 Score=66.87 Aligned_cols=40 Identities=8% Similarity=0.106 Sum_probs=30.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC--CCeEEEeccc
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACD 136 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~--~g~V~l~~~d 136 (302)
+.+| ++.|.||+|+|||||+-.++.-.... ++.+.+.+..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 4678 89999999999999977766655443 6778776654
No 258
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.68 E-value=0.00086 Score=59.48 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=34.9
Q ss_pred CeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 99 PFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 99 g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+.++++.+ ..|+||||+...||..+...+.+|.+.+.|..
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 44 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLR 44 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 45788875 67999999999999999988889999999983
No 259
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.67 E-value=4.6e-05 Score=63.93 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+.+++|+|++||||||+++.|+..+ |.+.+.+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcCc
Confidence 5689999999999999999999887 44555554443
No 260
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.67 E-value=4.1e-05 Score=67.30 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++|+|++|||||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999874
No 261
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.66 E-value=2.5e-05 Score=64.85 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=26.3
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999886
No 262
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.65 E-value=0.00031 Score=63.26 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
+..+++|+|+.|||||||++.|.|.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999863
No 263
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.63 E-value=0.00011 Score=64.89 Aligned_cols=21 Identities=43% Similarity=0.687 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag 121 (302)
.++++|++|+|||||++.|.+
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999865
No 264
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.62 E-value=0.00069 Score=62.60 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 68 FNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 68 ~~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
.+.+.+.+.+...+.+..... ......-.++.++++.| ..|+||||+...||..+...+.+|.+.+.|
T Consensus 113 q~~~~i~~ei~~~~~e~~~~~-~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 113 QRVDVIFKQILGVYSDMAANV-ATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT-CCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCHHHHHHHHHHHHhhccccc-ccccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 456666666666655544322 12334446789999996 889999999999999998777799999988
No 265
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.62 E-value=0.0001 Score=66.89 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=27.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
+.+|.++.|.||.|+||||++..++.. .++++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 456788899999999999999999875 3344444433
No 266
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.61 E-value=0.00011 Score=65.91 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68899999999999999999864
No 267
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.61 E-value=0.00028 Score=64.85 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-EecccCCChhHHHHH
Q psy2881 70 TEQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-LAACDTFRAAAYEQL 146 (302)
Q Consensus 70 ~~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-l~~~d~~~~~~~~ql 146 (302)
.+.+++.+.+.+..-+.. .+... ..++.-+.|.||.|+||||+++.++... +..+. +...+....
T Consensus 89 ~~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~------ 156 (357)
T 3d8b_A 89 VEFAKATIKEIVVWPMLRPDIFTGL---RGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK------ 156 (357)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGG---GSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS------
T ss_pred hHHHHHHHHHHHHHHhhChHhHhhc---cCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc------
Confidence 355556666555443221 11111 2445678999999999999999999865 23333 332222110
Q ss_pred HHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 147 LILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
............+..+....|.+|++||.
T Consensus 157 ---------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 157 ---------------WVGEGEKMVRALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp ---------------STTHHHHHHHHHHHHHHHTCSEEEEEETH
T ss_pred ---------------ccchHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 00111222333455556678999999998
No 268
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.61 E-value=2.7e-05 Score=65.68 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=26.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
..+|.+++|+||+||||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998774
No 269
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.60 E-value=3.1e-05 Score=65.19 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA 134 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~ 134 (302)
.+++|+||+||||||+.+.|+++ |...+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 47999999999999999999982 5455544
No 270
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.56 E-value=4.7e-05 Score=64.44 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=26.0
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
+.++.+.+ .+.+|+|||||||||++..|.-.+-
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44555544 5999999999999999999976554
No 271
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=9.4e-06 Score=74.05 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=26.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE
Q psy2881 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132 (302)
Q Consensus 102 i~lvGpnGsGKTTll~~Lag~~~~~~g~V~l 132 (302)
+.|.||+|+||||+++.+++.+.+..+++.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 8999999999999999999998766554333
No 272
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.56 E-value=0.00066 Score=73.63 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=71.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC----eeecCCCCCHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP----VISEKKITDPAAIAF 171 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~~~~~~~~~~~~~~ 171 (302)
+.+|+++.|.||+|+||||++..++......+++|.+.+.+-... |+. ++..++. ++.... ... .+.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~----ql~--A~~lGvd~~~L~i~~~~--~le-ei~ 799 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PIY--ARKLGVDIDNLLCSQPD--TGE-QAL 799 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC----HHH--HHHTTCCGGGCEEECCS--SHH-HHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHH----HHH--HHHcCCChhheEEecCC--cHH-HHH
Confidence 678999999999999999999999998888888888876554321 111 3333322 112211 222 222
Q ss_pred HHHHH-HHhCCCCeEEEcCCCCcc---------------ch-HHHHHHH---HHHHHHhchhhccccce
Q psy2881 172 NAINI-AQKKNTDIVIVDTSGRLS---------------TQ-SHLMREL---KKIKKVIEKKIFELPYE 220 (302)
Q Consensus 172 ~~la~-al~~~~~llllDEP~d~~---------------~~-~~l~~~L---~~l~~~~~~~i~~~~hd 220 (302)
+.+.+ ....+|++|++|.-.-.. .+ ..+.+.+ ..+++..+.++++++|-
T Consensus 800 ~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 800 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 22211 123689999999986111 11 2233334 44567778888887773
No 273
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.55 E-value=2.4e-05 Score=71.88 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.9
Q ss_pred CcceecCCCeE--EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 91 PLIFKKCKPFV--IMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 91 ~i~l~~~~g~i--i~lvGpnGsGKTTll~~Lag~~~ 124 (302)
.+++.+.+|++ ++|+||+||||||+.+.|++.+.
T Consensus 14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33455566766 99999999999999999999775
No 274
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.54 E-value=0.00051 Score=62.18 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE-EEecccCCChhHHHHH
Q psy2881 70 TEQVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV-LLAACDTFRAAAYEQL 146 (302)
Q Consensus 70 ~~~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V-~l~~~d~~~~~~~~ql 146 (302)
.+.+++.+.+.+..-++ ..+.. ...++.-+.|.||.|+||||+++.++..+. +..+ .+.+.+...
T Consensus 17 ~~~~k~~l~~~v~~p~~~~~~~~~---~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~------- 84 (322)
T 1xwi_A 17 LEGAKEALKEAVILPIKFPHLFTG---KRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVS------- 84 (322)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGSCT---TCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCC-------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhC---CCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHh-------
Confidence 34555556655543332 12221 124556788999999999999999998762 2222 233322210
Q ss_pred HHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881 147 LILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~ 191 (302)
...+ .........+..+....|.+|++||.-
T Consensus 85 -------------~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid 115 (322)
T 1xwi_A 85 -------------KWLG-ESEKLVKNLFQLARENKPSIIFIDEID 115 (322)
T ss_dssp -------------SSCC-SCHHHHHHHHHHHHHTSSEEEEEETTT
T ss_pred -------------hhhh-HHHHHHHHHHHHHHhcCCcEEEeecHH
Confidence 0001 112233344555666789999999984
No 275
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.54 E-value=1.3e-05 Score=81.59 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=28.8
Q ss_pred cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
.++.+.++..++|+||+|+||||+++.||+.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 345667888999999999999999999999874
No 276
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.52 E-value=4.4e-05 Score=64.03 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag 121 (302)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 277
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.52 E-value=0.0005 Score=59.55 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=35.1
Q ss_pred CeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 99 PFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 99 g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
+.++++.| ..|+||||+...||..+...+.+|.+.+.|..
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG 42 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 46788876 56899999999999999988889999999974
No 278
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.51 E-value=0.00019 Score=60.89 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
.-.++|+|+.||||||++..++...... .++...+.|..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 3578999999999999999999876544 56777777765
No 279
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.49 E-value=7.4e-05 Score=66.17 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++|+|..|||||||++.|.|.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 280
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.48 E-value=0.00022 Score=63.67 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+++..+.|.||+|+|||++++.||..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455678889999999999999999887
No 281
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.47 E-value=6.5e-05 Score=61.89 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999765
No 282
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.47 E-value=0.0048 Score=56.43 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
.++.+-|..|+||||+...+|..+...+.+|.+.+.|+.
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 455556899999999999999999988899999999984
No 283
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.45 E-value=3.7e-05 Score=62.74 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
+..+.|.||.|+||||+++.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999999999988754
No 284
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00016 Score=68.17 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881 71 EQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148 (302)
Q Consensus 71 ~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~ 148 (302)
+.+++.+.+.+..-+.. .+.. +.+.++.=+.|.||.|+|||++++.+|+.+... =+.+.+.+..
T Consensus 178 ~~~k~~l~e~v~~pl~~p~~~~~--~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~--~~~v~~~~l~---------- 243 (428)
T 4b4t_K 178 DMQKQEIREAVELPLVQADLYEQ--IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA--FIRVNGSEFV---------- 243 (428)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHH--HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE--EEEEEGGGTC----------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHh--CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--eEEEecchhh----------
Confidence 45566666655543321 1222 234555668999999999999999999976421 1222222211
Q ss_pred hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
.. +..+....+.+.+..|....|-++++||-
T Consensus 244 ----------~~-~~Ge~e~~ir~lF~~A~~~aP~IifiDEi 274 (428)
T 4b4t_K 244 ----------HK-YLGEGPRMVRDVFRLARENAPSIIFIDEV 274 (428)
T ss_dssp ----------CS-SCSHHHHHHHHHHHHHHHTCSEEEEEECT
T ss_pred ----------cc-ccchhHHHHHHHHHHHHHcCCCeeechhh
Confidence 00 11123344556666777788999999997
No 285
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.42 E-value=3.8e-05 Score=64.71 Aligned_cols=33 Identities=39% Similarity=0.585 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA 133 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~ 133 (302)
+++|.|++||||||+++.|+..+...+.+|.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 689999999999999999999988666666543
No 286
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.41 E-value=0.00057 Score=57.60 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++|+|+.|||||||++.|.+.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 287
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.41 E-value=0.00084 Score=59.71 Aligned_cols=28 Identities=29% Similarity=0.422 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
++..+.|.||+|+||||+++.++..+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4557899999999999999999988764
No 288
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.41 E-value=0.00017 Score=62.96 Aligned_cols=42 Identities=40% Similarity=0.423 Sum_probs=36.7
Q ss_pred CCeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 98 KPFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 98 ~g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
++.++++.+ ..|+||||+...||..+...+.+|.+.+.|.+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 47 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG 47 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCc
Confidence 567899985 669999999999999998888899999999863
No 289
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.39 E-value=7.6e-05 Score=69.29 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=36.3
Q ss_pred CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CC-eEEEeccc
Q psy2881 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KK-SVLLAACD 136 (302)
Q Consensus 91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g-~V~l~~~d 136 (302)
|+.+.+.+|+.++|+||+|+||||+++.|++..... .+ .+.+.+.+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIG 213 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 213 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEES
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEec
Confidence 577889999999999999999999999999987642 22 34444444
No 290
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.38 E-value=0.0007 Score=61.98 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
.+..+.|.||.|+||||+++.++..+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999988754
No 291
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.38 E-value=0.00014 Score=67.58 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=33.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
.+..++++||+||||||+++.|+..+.+.+++|.+.+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 455789999999999999999999888888999887644
No 292
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00028 Score=66.63 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881 71 EQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148 (302)
Q Consensus 71 ~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~ 148 (302)
+..++.+++.+..-++. .+. .+.+.++.=+.|.||.|+|||++++.+|+.+... =+.+.+.++..
T Consensus 187 ~~~k~~l~e~v~~pl~~p~~f~--~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~--~~~v~~s~l~s--------- 253 (437)
T 4b4t_L 187 TEQIRELREVIELPLKNPEIFQ--RVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN--FIFSPASGIVD--------- 253 (437)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHH--HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--EEEEEGGGTCC---------
T ss_pred HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EEEEehhhhcc---------
Confidence 44555565555543321 122 2234566668899999999999999999976421 12222222210
Q ss_pred hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
.+..+....+......|....|-+|++||-
T Consensus 254 ------------k~~Gese~~ir~~F~~A~~~~P~IifiDEi 283 (437)
T 4b4t_L 254 ------------KYIGESARIIREMFAYAKEHEPCIIFMDEV 283 (437)
T ss_dssp ------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECC
T ss_pred ------------ccchHHHHHHHHHHHHHHhcCCceeeeecc
Confidence 011122334555566777889999999997
No 293
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.37 E-value=0.00056 Score=54.29 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA 134 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~ 134 (302)
+.-+.|.||+|+|||++++.|+......++.+.++.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~ 59 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEEC
Confidence 345889999999999999999887655455444443
No 294
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00023 Score=67.24 Aligned_cols=95 Identities=22% Similarity=0.185 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881 71 EQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148 (302)
Q Consensus 71 ~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~ 148 (302)
+.+++.+.+.+..-+.. .+. .+.+.++.=+.|.||.|+|||++++.+|+..... =+.+.+.++.
T Consensus 187 ~~~k~~l~e~v~~pl~~pe~f~--~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~--f~~v~~s~l~---------- 252 (434)
T 4b4t_M 187 DKQIEELVEAIVLPMKRADKFK--DMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT--FLKLAAPQLV---------- 252 (434)
T ss_dssp HHHHHHHHHHTHHHHHCSHHHH--HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--EEEEEGGGGC----------
T ss_pred HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC--EEEEehhhhh----------
Confidence 45555566555443321 112 2335556678999999999999999999976421 1222222211
Q ss_pred hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
..+..+....++.....|....|-+|++||-
T Consensus 253 -----------~~~vGese~~ir~lF~~A~~~aP~IifiDEi 283 (434)
T 4b4t_M 253 -----------QMYIGEGAKLVRDAFALAKEKAPTIIFIDEL 283 (434)
T ss_dssp -----------SSCSSHHHHHHHHHHHHHHHHCSEEEEEECT
T ss_pred -----------hcccchHHHHHHHHHHHHHhcCCeEEeecch
Confidence 0011122334455566666778999999996
No 295
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.36 E-value=0.00011 Score=59.94 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.+|..++|+|++|||||||++.+++.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999999999875
No 296
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.34 E-value=0.00011 Score=60.86 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=20.0
Q ss_pred hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag 121 (302)
..+++++++..++. .++++|++||||||+++.+.+
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 34567778876655 678999999999999999986
No 297
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.33 E-value=0.00012 Score=59.19 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
+++|+||+||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998763
No 298
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.33 E-value=0.0014 Score=71.22 Aligned_cols=118 Identities=12% Similarity=0.096 Sum_probs=70.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe---eecCCCCCHHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV---ISEKKITDPAAIAFN 172 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~---~~~~~~~~~~~~~~~ 172 (302)
+++|.++.|.||+|+||||++..++......++.+.+.+.+-..... +++..++.. +.. ...... ...+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~------~a~~lGvd~~~L~i~-~~~~~e-~~l~ 451 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI------YARKLGVDIDNLLCS-QPDTGE-QALE 451 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH------HHHHTTCCGGGCEEE-CCSSHH-HHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH------HHHHcCCCHHHeEEc-CCCCHH-HHHH
Confidence 56899999999999999999999988877778888888766432211 122333221 111 111222 2222
Q ss_pred HHHH-HHhCCCCeEEEcCCC--Ccc-------------ch-HHHHHHH---HHHHHHhchhhcccccee
Q psy2881 173 AINI-AQKKNTDIVIVDTSG--RLS-------------TQ-SHLMREL---KKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 173 ~la~-al~~~~~llllDEP~--d~~-------------~~-~~l~~~L---~~l~~~~~~~i~~~~hd~ 221 (302)
.+.+ ....+|++|++|... .+. .+ ..+.+.+ ..+++..+.+++++.|-.
T Consensus 452 ~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~ 520 (1706)
T 3cmw_A 452 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 2211 224689999999886 210 11 1233344 444567788888887743
No 299
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.32 E-value=0.00054 Score=61.87 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=44.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI 176 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 176 (302)
.++.-+.|.||.|+||||+++.++.... ..+...... +....|. ..........+..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~v~~~-------~l~~~~~-------------g~~~~~~~~~f~~ 105 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSS-------DLVSKWM-------------GESEKLVKQLFAM 105 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT---CEEEEEEHH-------HHHTTTG-------------GGHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC---CCEEEEchH-------HHhhccc-------------chHHHHHHHHHHH
Confidence 3456788999999999999999998752 233222210 0000000 1222334444556
Q ss_pred HHhCCCCeEEEcCCC
Q psy2881 177 AQKKNTDIVIVDTSG 191 (302)
Q Consensus 177 al~~~~~llllDEP~ 191 (302)
+...+|.+|++||..
T Consensus 106 a~~~~~~vl~iDEid 120 (322)
T 3eie_A 106 ARENKPSIIFIDQVD 120 (322)
T ss_dssp HHHTSSEEEEEECGG
T ss_pred HHhcCCeEEEechhh
Confidence 667789999999984
No 300
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.31 E-value=0.00016 Score=59.64 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.+|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999866
No 301
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00025 Score=66.19 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881 71 EQVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148 (302)
Q Consensus 71 ~~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~ 148 (302)
+.+++.+++.+.--++ ..+..+ .+.++.=+.|.||.|+|||++++.+|+..... =+.+.+.+..
T Consensus 154 ~~~k~~l~e~v~~Pl~~pe~f~~~--gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f~~v~~s~l~---------- 219 (405)
T 4b4t_J 154 TKQIKEIKEVIELPVKHPELFESL--GIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--FIRVSGAELV---------- 219 (405)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHH--TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--EEEEEGGGGS----------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhC--CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--ceEEEhHHhh----------
Confidence 4455555555543222 122222 23444458899999999999999999976421 1223332221
Q ss_pred hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
. .+-.+....+++.+..|....|-+|++||-
T Consensus 220 ----------s-k~vGese~~vr~lF~~Ar~~aP~IIFiDEi 250 (405)
T 4b4t_J 220 ----------Q-KYIGEGSRMVRELFVMAREHAPSIIFMDEI 250 (405)
T ss_dssp ----------C-SSTTHHHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred ----------c-cccchHHHHHHHHHHHHHHhCCceEeeecc
Confidence 0 011133345556677777888999999997
No 302
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.30 E-value=0.00015 Score=62.52 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 578899999999999999999999865
No 303
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.30 E-value=9.9e-05 Score=66.34 Aligned_cols=26 Identities=38% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++.+++|+|++|||||||++.|.|.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34568999999999999999999985
No 304
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.29 E-value=0.00074 Score=59.22 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++..+.|.||+|+||||+++.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345678899999999999999999874
No 305
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.29 E-value=0.00027 Score=59.11 Aligned_cols=35 Identities=26% Similarity=0.535 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA 133 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~ 133 (302)
+|.+++|.|+.||||||+.+.|+..+...+ .+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 467899999999999999999999876544 56443
No 306
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.29 E-value=0.00015 Score=74.54 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhCCCC--eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881 166 PAAIAFNAINIAQKKNTD--IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID 226 (302)
Q Consensus 166 ~~~~~~~~la~al~~~~~--llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~ 226 (302)
-.+..+-.||+|++++|+ ++|+|||+ |+.....+++.|+++.+. |.|+++++||..++..
T Consensus 467 GGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G~TvivVtHd~~~~~~ 531 (916)
T 3pih_A 467 GGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVEHDEEVIRN 531 (916)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-TCEEEEECCCHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHh
Confidence 344555569999999887 99999998 999999999999999754 8899999999876543
No 307
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.28 E-value=0.00032 Score=60.90 Aligned_cols=41 Identities=29% Similarity=0.491 Sum_probs=36.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
.+.-++.++|..||||||++..|+..+. .+.+|.+.+.|++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 3457899999999999999999999988 7889999998875
No 308
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.00016 Score=59.09 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.27 E-value=0.00017 Score=59.40 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKR 126 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~ 126 (302)
|.++.|.||.||||||+.+.|+..+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5689999999999999999999877543
No 310
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.26 E-value=0.0011 Score=72.92 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=55.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAIN 175 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la 175 (302)
+++|+++.|.||+|+|||||+..++.-....++++.+.+.+-...... .+.++-...--.+.+.. +.+...+.+.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~--a~~~G~dl~~l~v~~~~---~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKLGVDIDNLLCSQPD---TGEQALEICD 1498 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH--HHHTTCCTTTCEEECCS---SHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH--HHHcCCCchhceeecCC---hHHHHHHHHH
Confidence 568999999999999999999999887777788999987653211111 23333221111222221 2222222111
Q ss_pred -HHHhCCCCeEEEcCCC
Q psy2881 176 -IAQKKNTDIVIVDTSG 191 (302)
Q Consensus 176 -~al~~~~~llllDEP~ 191 (302)
.+....|++|++|+-.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 2234789999999973
No 311
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.25 E-value=0.00036 Score=58.84 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKR 126 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~ 126 (302)
..+.|.||+|+||||+++.++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 478999999999999999999877643
No 312
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0005 Score=64.60 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881 71 EQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148 (302)
Q Consensus 71 ~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~ 148 (302)
+.+++.+++.+..-++. .+. .+.+.++.=+.|.||.|+|||++++.+|+..... =+.+.+.++.
T Consensus 188 d~~k~~L~e~v~~Pl~~pe~f~--~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--fi~v~~s~l~---------- 253 (437)
T 4b4t_I 188 ESQIQEIKESVELPLTHPELYE--EMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--FLRIVGSELI---------- 253 (437)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHH--HHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--EEEEESGGGC----------
T ss_pred HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--EEEEEHHHhh----------
Confidence 55666666665543321 122 2234555668999999999999999999976421 1222222211
Q ss_pred hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
. .+-.+....++..+..|....|-+|++||-
T Consensus 254 ----------s-k~vGesek~ir~lF~~Ar~~aP~IIfiDEi 284 (437)
T 4b4t_I 254 ----------Q-KYLGDGPRLCRQIFKVAGENAPSIVFIDEI 284 (437)
T ss_dssp ----------C-SSSSHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred ----------h-ccCchHHHHHHHHHHHHHhcCCcEEEEehh
Confidence 1 111123345556666777788999999986
No 313
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.24 E-value=9.1e-05 Score=64.82 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 102 IMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 102 i~lvGpnGsGKTTll~~Lag~~~ 124 (302)
+.|.||+|+||||+++.++....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 77999999999999999998764
No 314
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.24 E-value=0.00015 Score=58.43 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
-.++|+|++|||||||++.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 315
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00041 Score=65.80 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881 71 EQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148 (302)
Q Consensus 71 ~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~ 148 (302)
+.+++.+++.+.--+.. .+. .+.+.++.=+.|.||.|+|||++++.+|+..... =+.+.+.++.
T Consensus 215 ~~~k~~L~e~V~~pl~~pe~f~--~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~--fi~vs~s~L~---------- 280 (467)
T 4b4t_H 215 KDQIEKLREVVELPLLSPERFA--TLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT--FIRVIGSELV---------- 280 (467)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHH--HHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE--EEEEEGGGGC----------
T ss_pred HHHHHHHHHHHHHHhcCHHHHH--HCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC--eEEEEhHHhh----------
Confidence 45666666555433321 222 2334556668899999999999999999976421 1222222211
Q ss_pred hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
. .+-.+....++..+..|....|-+|++||-
T Consensus 281 ----------s-k~vGesek~ir~lF~~Ar~~aP~IIfiDEi 311 (467)
T 4b4t_H 281 ----------Q-KYVGEGARMVRELFEMARTKKACIIFFDEI 311 (467)
T ss_dssp ----------C-CSSSHHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred ----------c-ccCCHHHHHHHHHHHHHHhcCCceEeeccc
Confidence 0 111123345556667777888999999997
No 316
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.22 E-value=0.00051 Score=62.71 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
+|..+.|.||.|+||||+++.++..+.....-+.+.+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 467899999999999999999999887544555555544
No 317
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.22 E-value=0.00039 Score=66.03 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag 121 (302)
.++|+|.+|||||||++.|+|
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 799999999999999999987
No 318
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=97.22 E-value=0.00037 Score=63.07 Aligned_cols=45 Identities=33% Similarity=0.403 Sum_probs=38.6
Q ss_pred eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
..+..-++++|.|-.|+||||+...||..+...+.+|.+.+.|++
T Consensus 43 ~~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 43 DKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred cCCCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 345667899999999999999999999999999999999999975
No 319
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.22 E-value=0.00032 Score=61.43 Aligned_cols=39 Identities=31% Similarity=0.522 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
++.++.|+|++||||||+.+.|+..+...+-.+.+.+.|
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 467899999999999999999998876544444434444
No 320
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.20 E-value=0.00021 Score=62.53 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.+++|+||+||||||+.+.|+..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999865
No 321
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.18 E-value=7e-05 Score=62.61 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=26.2
Q ss_pred cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag 121 (302)
+++++++..++. .++++|++|||||||++.+.+
T Consensus 15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 445667776655 578999999999999999875
No 322
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.17 E-value=0.00055 Score=62.84 Aligned_cols=99 Identities=15% Similarity=0.227 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH
Q psy2881 67 LFNTEQVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE 144 (302)
Q Consensus 67 ~~~~~~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ 144 (302)
+...+.+++.+.+.+..-+. ..+.. ...++.-+.|.||.|+||||+++.++..+. ..+..... .+
T Consensus 53 i~G~~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~v~~-------~~ 119 (355)
T 2qp9_X 53 VAGLEGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSS-------SD 119 (355)
T ss_dssp SCCGGGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEEEH-------HH
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCEEEeeH-------HH
Confidence 34456666666666543332 11221 123445588999999999999999998763 22322211 11
Q ss_pred HHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881 145 QLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG 191 (302)
Q Consensus 145 ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~ 191 (302)
. ..... + .........+..+....|.+|++||..
T Consensus 120 l---~~~~~---------g-~~~~~~~~~f~~a~~~~~~vl~iDEid 153 (355)
T 2qp9_X 120 L---VSKWM---------G-ESEKLVKQLFAMARENKPSIIFIDQVD 153 (355)
T ss_dssp H---HSCC-------------CHHHHHHHHHHHHHTSSEEEEEECGG
T ss_pred H---hhhhc---------c-hHHHHHHHHHHHHHHcCCeEEEEechH
Confidence 1 01000 0 111233344555566789999999985
No 323
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.17 E-value=0.00032 Score=57.66 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA 133 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~ 133 (302)
++.|.|+.||||||+.+.|+..+...+-.+.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 689999999999999999999887544445544
No 324
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.16 E-value=0.00024 Score=57.81 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag 121 (302)
+.++.|.||+||||||+.+.|+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35799999999999999999987
No 325
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.16 E-value=0.0029 Score=69.53 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=69.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC----eeecCCCCCHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP----VISEKKITDPAAIAF 171 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~~~~~~~~~~~~~~ 171 (302)
+++|.++.|.||+|+||||++..++......++.|.+.+.+-..... +++..++. ++... .... .+.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~------~a~~lGvd~~~L~I~~~--~~~e-~il 450 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI------YARKLGVDIDNLLCSQP--DTGE-QAL 450 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH------HHHHTTCCTTTCEEECC--SSHH-HHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHH------HHHHcCCCHHHeEEeCC--CCHH-HHH
Confidence 56899999999999999999999998887777888887765432211 12233322 12221 1222 222
Q ss_pred HHHHH-HHhCCCCeEEEcCCC--Cc--------c-----ch-HHHHHHHHHH---HHHhchhhccccce
Q psy2881 172 NAINI-AQKKNTDIVIVDTSG--RL--------S-----TQ-SHLMRELKKI---KKVIEKKIFELPYE 220 (302)
Q Consensus 172 ~~la~-al~~~~~llllDEP~--d~--------~-----~~-~~l~~~L~~l---~~~~~~~i~~~~hd 220 (302)
+.+.+ ....+|++|++|.-. .+ . .+ ..+...|+++ ++..+.+++++.|-
T Consensus 451 ~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl 519 (2050)
T 3cmu_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 519 (2050)
T ss_dssp HHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 22211 124689999999874 11 0 11 2234445554 56678788877773
No 326
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.15 E-value=0.00025 Score=65.47 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
+++|+|++|||||||++.|++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 599999999999999999998643
No 327
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.15 E-value=0.00032 Score=67.35 Aligned_cols=71 Identities=23% Similarity=0.266 Sum_probs=43.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI 176 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 176 (302)
.++.-+.|.||+|+|||++++.|+... +..+...++. .+ ..... .+........+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~--------~l--~~~~~----------g~~~~~~~~~f~~ 292 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP--------EI--MSKLA----------GESESNLRKAFEE 292 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHH--------HH--HTSCT----------THHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEch--------Hh--hhhhc----------chhHHHHHHHHHH
Confidence 445568899999999999999998865 3333332211 00 00000 1122233444666
Q ss_pred HHhCCCCeEEEcCC
Q psy2881 177 AQKKNTDIVIVDTS 190 (302)
Q Consensus 177 al~~~~~llllDEP 190 (302)
|....|.+|+|||.
T Consensus 293 A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 293 AEKNAPAIIFIDEL 306 (489)
T ss_dssp HHHTCSEEEEEESH
T ss_pred HHhcCCcEEEecch
Confidence 67778899999997
No 328
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.14 E-value=0.00025 Score=58.93 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
+++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.13 E-value=0.00027 Score=58.04 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+.++.|+||.||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999999766
No 330
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.13 E-value=0.00024 Score=58.22 Aligned_cols=27 Identities=37% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++.++.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998765
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.12 E-value=0.00031 Score=57.89 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998765
No 332
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.12 E-value=0.00029 Score=58.23 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999765
No 333
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.12 E-value=0.00051 Score=57.64 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL 131 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~ 131 (302)
.+|.+++|.|+.||||||+.+.|+..+....-++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 46789999999999999999999988765544553
No 334
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.11 E-value=0.00024 Score=58.07 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
++.|+||+||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 335
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.10 E-value=0.00028 Score=61.11 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.+-+++|.||+||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999766
No 336
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.10 E-value=0.00027 Score=57.85 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++|+|++|||||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 337
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.09 E-value=0.00034 Score=59.23 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag 121 (302)
++.+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 338
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.09 E-value=0.0018 Score=58.58 Aligned_cols=42 Identities=31% Similarity=0.375 Sum_probs=35.7
Q ss_pred CCC--eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 97 CKP--FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 97 ~~g--~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
.+| .++.+-|..|+||||+...+|..+...+.+|.+.+.|+.
T Consensus 10 ~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 10 NKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp BTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 346 455566899999999999999999988899999999973
No 339
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.09 E-value=0.00024 Score=67.17 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhh------------hCCCeEEEecc
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFK------------KRKKSVLLAAC 135 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~------------~~~g~V~l~~~ 135 (302)
.-.++|+|+||||||||++.|+|... +..|.+.+.|.
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 34799999999999999999999753 44566766664
No 340
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.09 E-value=0.0012 Score=56.27 Aligned_cols=114 Identities=9% Similarity=0.064 Sum_probs=62.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-CChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-FRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAI 174 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (302)
-.+|.+..+.||=||||||.+-.++..+.-.+.+|.+..-.. .|.+.. ....+.++........ +.. +.+
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~----~i~s~~g~~~~a~~~~-~~~----~~~ 95 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEE----DVVSHNGLKVKAVPVS-ASK----DIF 95 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC---------------------CCEEECS-SGG----GGG
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHH----HHHhhcCCeeEEeecC-CHH----HHH
Confidence 357899999999999999999999888887888888874211 121111 1112222221111011 111 111
Q ss_pred HHHHh-CCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 175 NIAQK-KNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 175 a~al~-~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
. .+ .++++|++||.-.... . .++.+..+.+. +..+++.-.|..+
T Consensus 96 ~--~~~~~~dvViIDEaQF~~~-~-~V~~l~~l~~~-~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 96 K--HITEEMDVIAIDEVQFFDG-D-IVEVVQVLANR-GYRVIVAGLDQDF 140 (214)
T ss_dssp G--GCCSSCCEEEECCGGGSCT-T-HHHHHHHHHHT-TCEEEEEECSBCT
T ss_pred H--HHhcCCCEEEEECcccCCH-H-HHHHHHHHhhC-CCEEEEEeccccc
Confidence 1 12 3589999999952211 1 33667776554 6666666666554
No 341
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=97.08 E-value=0.001 Score=61.80 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=36.6
Q ss_pred CCCeEEEEE-cCCCCCHHHHHHHHHhHhhh------CCCeEEEecccCCC
Q psy2881 97 CKPFVIMIV-GVNGVGKTTTIGKLANYFKK------RKKSVLLAACDTFR 139 (302)
Q Consensus 97 ~~g~ii~lv-GpnGsGKTTll~~Lag~~~~------~~g~V~l~~~d~~~ 139 (302)
.++.++++. |..|+||||+...||..+.. .+.+|.+.+.|++.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 457889988 68899999999999998873 57899999999853
No 342
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.08 E-value=0.00028 Score=56.85 Aligned_cols=19 Identities=42% Similarity=0.634 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy2881 101 VIMIVGVNGVGKTTTIGKL 119 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~L 119 (302)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999998
No 343
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.08 E-value=0.0011 Score=55.52 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV 130 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V 130 (302)
.+|.+++|.|+.||||||+.+.|+..+....-++
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4678999999999999999999998776444344
No 344
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.08 E-value=0.00035 Score=58.07 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA 134 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~ 134 (302)
++.+++|+|++||||||+.+.|+.. |-..+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 4679999999999999999999874 5445543
No 345
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.06 E-value=0.00077 Score=57.53 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=58.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-CChhHHHHHHHhcccCCCCeee--cCCCCCHHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-FRAAAYEQLLILGKYNDVPVIS--EKKITDPAAIAFNA 173 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 173 (302)
..|.+..+.||-||||||.+-..+..+...+.++.+..-.. .|.+. .....+.++..-. .....+
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~----~~I~Sr~G~~~~a~~v~~~~d-------- 93 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHK----EKVVSHNGNAIEAINISKASE-------- 93 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC---------------CBTTBCCEEEEESSGGG--------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchh----hhHHHhcCCceeeEEeCCHHH--------
Confidence 56899999999999999955444555566667777763221 12111 1233344433221 111111
Q ss_pred HHHHHhCCCCeEEEcCCC--CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 174 INIAQKKNTDIVIVDTSG--RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 174 la~al~~~~~llllDEP~--d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
|...+..++++|++||+- +. .+.+.+.++++ .+..+++.--|..+
T Consensus 94 i~~~i~~~~dvV~IDEaQFf~~----~~v~~l~~la~-~gi~Vi~~GLd~DF 140 (219)
T 3e2i_A 94 IMTHDLTNVDVIGIDEVQFFDD----EIVSIVEKLSA-DGHRVIVAGLDMDF 140 (219)
T ss_dssp GGGSCCTTCSEEEECCGGGSCT----HHHHHHHHHHH-TTCEEEEEEESBCT
T ss_pred HHHHHhcCCCEEEEechhcCCH----HHHHHHHHHHH-CCCEEEEeeccccc
Confidence 111123678999999994 32 35566777763 46555544444433
No 346
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.05 E-value=0.00022 Score=58.64 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++|+|++|||||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 347
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.05 E-value=0.00034 Score=58.32 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 348
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.05 E-value=0.00055 Score=56.57 Aligned_cols=33 Identities=45% Similarity=0.735 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA 133 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~ 133 (302)
+++|.|+.||||||+++.|+..+...+-.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 689999999999999999999887655555443
No 349
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.05 E-value=0.00018 Score=59.69 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999999876
No 350
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.03 E-value=0.00073 Score=56.16 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA 133 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~ 133 (302)
+|.++.+.||.|+||||++..++..+...+.+|.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478999999999999999977777666666777764
No 351
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.02 E-value=0.001 Score=64.36 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
+...++|+|+.|+|||||+..|++.
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 3457999999999999999999864
No 352
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.02 E-value=0.00026 Score=63.34 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
++-+++|.||+||||||+.+.|+..+...+-++.+.+.|-+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 45689999999999999999999877644445666666543
No 353
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.01 E-value=0.0036 Score=58.67 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
..+.++.|+|++||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998754
No 354
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.01 E-value=0.00025 Score=66.15 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
+..+..++|+|+||||||||++.|++.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 456778999999999999999999987
No 355
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.001 Score=60.08 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 102 IMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 102 i~lvGpnGsGKTTll~~Lag~~~ 124 (302)
+.|.||+|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999875
No 356
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.99 E-value=0.0045 Score=56.37 Aligned_cols=40 Identities=43% Similarity=0.433 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
..++.+-|..|+||||+...+|..+...+.+|.+.+.|..
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3577778999999999999999999888889999999964
No 357
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.99 E-value=0.00028 Score=65.19 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=0.0
Q ss_pred CCCcceecCCCeEEEEEcCCCCCHHHHHHHHH
Q psy2881 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLA 120 (302)
Q Consensus 89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~La 120 (302)
+++..+++.+| +.+|+|||||||||++-.|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
No 358
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.98 E-value=0.00065 Score=64.49 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=43.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHH
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a 177 (302)
++.-+.|.||+|+||||+++.+|..+...---+.+.+.+.+.. .. ... ....+.+.+|
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~--------------------~~-~~~-~~~~~~f~~a 119 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST--------------------EI-KKT-EVLMENFRRA 119 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS--------------------SS-CHH-HHHHHHHHHT
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH--------------------hh-hhh-HHHHHHHHHH
Confidence 4456889999999999999999998754323334443332210 00 011 1233444444
Q ss_pred ---HhCCCCeEEEcCC
Q psy2881 178 ---QKKNTDIVIVDTS 190 (302)
Q Consensus 178 ---l~~~~~llllDEP 190 (302)
....|.+|++||.
T Consensus 120 ~~~~~~~~~il~iDEi 135 (456)
T 2c9o_A 120 IGLRIKETKEVYEGEV 135 (456)
T ss_dssp EEEEEEEEEEEEEEEE
T ss_pred HhhhhcCCcEEEEech
Confidence 4467899999987
No 359
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.98 E-value=0.00038 Score=58.14 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhHh
Q psy2881 102 IMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 102 i~lvGpnGsGKTTll~~Lag~~ 123 (302)
+.|+||+||||||+++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
No 360
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=96.96 E-value=0.0073 Score=51.83 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=83.5
Q ss_pred eEEEEEcC-CCCCHHHHHHHHHhHhhhCCCeEEEe-----cccCCCh----hHHHHHHHhcccCC----CCeeecCCCCC
Q psy2881 100 FVIMIVGV-NGVGKTTTIGKLANYFKKRKKSVLLA-----ACDTFRA----AAYEQLLILGKYND----VPVISEKKITD 165 (302)
Q Consensus 100 ~ii~lvGp-nGsGKTTll~~Lag~~~~~~g~V~l~-----~~d~~~~----~~~~ql~~~~~~~~----~~~~~~~~~~~ 165 (302)
..+.|.|. +|+||||+...|+..+...+.+|.+. |.+.... ....+ ........ .++.... +..
T Consensus 5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~~-p~s 82 (228)
T 3of5_A 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESIL-NAYKHKFTAAEINLISFNQ-AVA 82 (228)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHH-HHTTTSSCHHHHCSEEESS-SSC
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHH-HhcCCCCChhhEEEEEECC-CCC
Confidence 46788996 79999999999999999888888774 2221110 01111 11110000 1222211 111
Q ss_pred H------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCC
Q psy2881 166 P------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTG 230 (302)
Q Consensus 166 ~------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g 230 (302)
+ ...+.+.+.+.+..++|++|+|.|+ ++-..... ..++++..+. -+.+|.++..+
T Consensus 83 p~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~---~adla~~l~~-------pviLV~~~~~~ 152 (228)
T 3of5_A 83 PHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTT---QLDLIKALQI-------PVLLVSAIKVG 152 (228)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCB---HHHHHHHHTC-------CEEEEEECSTT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchh---HHHHHHHcCC-------CEEEEEcCCcc
Confidence 1 1122233332255789999999985 33221111 1122222221 23445555544
Q ss_pred h--hHHHHHHHH-HhhcCCCeEEEecCCCC-CchhHHHH-hhhHhCCceEE
Q psy2881 231 Q--NTLSQIKEF-SKILRITGLIITKLDGT-TKGGILAA-IAKKYSIPLYF 276 (302)
Q Consensus 231 ~--~~~~~~~~f-~~~~~~~~~i~tk~d~~-~~~g~~~~-~~~~~~~pv~~ 276 (302)
. ..+...+.+ .....+.|+|+|+.+.. ........ +...+++|+.-
T Consensus 153 ~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvLG 203 (228)
T 3of5_A 153 CINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSA 203 (228)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCSE
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEEE
Confidence 3 223333333 33456678999999875 33333344 44457988653
No 361
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.96 E-value=0.001 Score=56.74 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
+|.++.|-|+.||||||.++.|+..+...+-+|.....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~ 42 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE 42 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC
Confidence 58899999999999999999999999877767765433
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.95 E-value=0.0003 Score=57.61 Aligned_cols=27 Identities=37% Similarity=0.433 Sum_probs=19.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
++.++.|.|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987653
No 363
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.93 E-value=0.00054 Score=58.10 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+|.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999876
No 364
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.93 E-value=0.0021 Score=60.76 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++.-+.|.||.|+||||+++.++..+
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678899999999999999999876
No 365
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.0012 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 102 IMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 102 i~lvGpnGsGKTTll~~Lag~~~ 124 (302)
+.|.||.|+||||+++.++..+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999998764
No 366
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.92 E-value=0.0014 Score=56.82 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCe-EEEe
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS-VLLA 133 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~-V~l~ 133 (302)
+|.++.|.|+.||||||+++.|+..+...+-+ +.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 58899999999999999999999999876656 4443
No 367
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.92 E-value=0.00069 Score=57.98 Aligned_cols=41 Identities=34% Similarity=0.380 Sum_probs=31.1
Q ss_pred eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
-...++.++.|+||.||||||..+.|+..+ |-..+...|..
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~----g~~hIstGdll 64 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF----HFNHLSSGDLL 64 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH----CCEEECHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH----CCceEcHHHHH
Confidence 345678999999999999999999999876 33445444443
No 368
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.92 E-value=0.0007 Score=55.57 Aligned_cols=26 Identities=35% Similarity=0.610 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.+.+++|.|+.||||||+.+.|+..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 369
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.91 E-value=0.0016 Score=55.42 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEe
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLA 133 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~ 133 (302)
+|.++.|-|+.||||||.++.|+..+...+. .|.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 4789999999999999999999999987665 56443
No 370
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.91 E-value=0.0015 Score=66.27 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-EecccCCChhHHHHHHH
Q psy2881 72 QVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-LAACDTFRAAAYEQLLI 148 (302)
Q Consensus 72 ~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-l~~~d~~~~~~~~ql~~ 148 (302)
..++.+++.+.--++ ..+.. +.+.++.-+.|.||.|+||||+++.+|+.+. ..+. +.+.+.
T Consensus 211 ~~~~~l~e~v~~pl~~p~~f~~--~g~~~p~GILL~GPPGTGKT~LAraiA~elg---~~~~~v~~~~l----------- 274 (806)
T 3cf2_A 211 KQLAQIKEMVELPLRHPALFKA--IGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEI----------- 274 (806)
T ss_dssp TTHHHHHHHHHHHHHCCGGGTS--CCCCCCCEEEEECCTTSCHHHHHHHHHTTTT---CEEEEEEHHHH-----------
T ss_pred HHHHHHHHHHHHHccCHHHHhh--cCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CeEEEEEhHHh-----------
Confidence 344445554443232 23333 3345566788999999999999999998653 2222 222111
Q ss_pred hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS 190 (302)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP 190 (302)
.. ....+........+..|....|-+|++||-
T Consensus 275 ~s----------k~~gese~~lr~lF~~A~~~~PsIIfIDEi 306 (806)
T 3cf2_A 275 MS----------KLAGESESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp HS----------SCTTHHHHHHHHHHHHHTTSCSEEEEEESG
T ss_pred hc----------ccchHHHHHHHHHHHHHHHcCCeEEEEehh
Confidence 01 111123344556677777788999999997
No 371
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.91 E-value=0.0018 Score=59.98 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=42.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHH
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a 177 (302)
++.-+.|.||.|+||||+++.++... +..+....+...... | .+ .........+..+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~-------~------------~g-~~~~~~~~~~~~a 203 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSK-------Y------------VG-EGEKLVRALFAVA 203 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC---------------------------CHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhcc-------c------------cc-hHHHHHHHHHHHH
Confidence 45678999999999999999998764 334433332211000 0 00 0112223334455
Q ss_pred HhCCCCeEEEcCCC
Q psy2881 178 QKKNTDIVIVDTSG 191 (302)
Q Consensus 178 l~~~~~llllDEP~ 191 (302)
...+|.+|+|||.-
T Consensus 204 ~~~~~~il~iDEid 217 (389)
T 3vfd_A 204 RELQPSIIFIDQVD 217 (389)
T ss_dssp HHSSSEEEEEETGG
T ss_pred HhcCCeEEEEECch
Confidence 56788999999983
No 372
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.90 E-value=0.0024 Score=65.29 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
..+.|+||+|+|||++++.|+..+...++.+...++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~ 625 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 625 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 5788999999999999999999987655555544443
No 373
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.90 E-value=0.00068 Score=56.58 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
-.++.+++|.|+.||||||+.+.|+..+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456799999999999999999998754
No 374
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.89 E-value=0.0043 Score=53.98 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
.-+.|.||+|+|||++++.|+......++.+...++
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence 457899999999999999999887655555544443
No 375
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.88 E-value=0.00087 Score=55.12 Aligned_cols=31 Identities=39% Similarity=0.570 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVL 131 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~ 131 (302)
+++|.|+.||||||+.+.|+..+...+-.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6899999999999999999998765444443
No 376
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.87 E-value=0.0022 Score=59.18 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.6
Q ss_pred CCeEEEE--EcCCCCCHHHHHHHHHhHhhh
Q psy2881 98 KPFVIMI--VGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 98 ~g~ii~l--vGpnGsGKTTll~~Lag~~~~ 125 (302)
.+..+.| .||.|+||||+++.++..+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 3567777 999999999999999987754
No 377
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.87 E-value=0.00068 Score=56.58 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
..|.+++|+|+.||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999866
No 378
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.87 E-value=0.00097 Score=57.94 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
.+.-+++|.|+.||||||+.+.|+..+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999988654
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.86 E-value=0.00058 Score=58.28 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998765
No 380
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=96.86 E-value=0.0017 Score=59.68 Aligned_cols=40 Identities=38% Similarity=0.507 Sum_probs=34.8
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 100 FVIMIV-GVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 100 ~ii~lv-GpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
.++++. +..|+||||+...||..+...+.+|.+.+.|.+.
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~ 42 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQC 42 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence 366776 5789999999999999998888999999999874
No 381
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.86 E-value=0.0049 Score=57.41 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
-.++++|+.|+|||||++.|.+....
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~ 37 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAA 37 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhh
Confidence 46899999999999999999986544
No 382
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.85 E-value=0.00057 Score=58.06 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
.+.++.|+||.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999998763
No 383
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.84 E-value=0.00067 Score=56.59 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999998763
No 384
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.84 E-value=0.0015 Score=61.49 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag 121 (302)
.++|+|++|||||||++.|++
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEE
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999986
No 385
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=96.83 E-value=0.0065 Score=55.03 Aligned_cols=39 Identities=44% Similarity=0.445 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~ 138 (302)
.++.+-|..|+||||+...||..+...+.+|.+.+.|+.
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 455566899999999999999999888889999999975
No 386
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.83 E-value=0.0011 Score=68.10 Aligned_cols=57 Identities=7% Similarity=0.118 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCC--CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 167 AAIAFNAINIAQKKNT--DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 167 ~~~~~~~la~al~~~~--~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+..+-.||+++..+| +++|||||+ |+.....+++.|+++.+ .|.|+++++||...+
T Consensus 508 GEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i 569 (972)
T 2r6f_A 508 GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTM 569 (972)
T ss_dssp HHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH
Confidence 4444555999999884 999999998 99999999999999964 588999999988654
No 387
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0059 Score=55.21 Aligned_cols=29 Identities=7% Similarity=0.106 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
.+|..+.|.||.|+|||++++.++..+..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999998863
No 388
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.82 E-value=0.0057 Score=52.68 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=60.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--ccCCChhHHHHHHHhcccCCCCee--ecCCCCCHHHHHH
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--CDTFRAAAYEQLLILGKYNDVPVI--SEKKITDPAAIAF 171 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--~d~~~~~~~~ql~~~~~~~~~~~~--~~~~~~~~~~~~~ 171 (302)
-..|.+..+.||=||||||.+-..+..+.-.+.+|.+.. .|. |.+ . .+ ..+.++... ......+
T Consensus 16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~-Ryg-~-~i---~sr~G~~~~a~~i~~~~d------ 83 (234)
T 2orv_A 16 KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT-RYS-S-SF---CTHDRNTMEALPACLLRD------ 83 (234)
T ss_dssp --CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC-CC----------------CEEEEESSGGG------
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc-cch-H-HH---HhhcCCeeEEEecCCHHH------
Confidence 356999999999999999998888887777777888865 332 322 1 11 112232211 1111111
Q ss_pred HHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 172 NAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 172 ~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
.+. .+.++++|++||.--... +.+.+..+.+ .+..+++.-++..+
T Consensus 84 -i~~--~~~~~dvViIDEaQF~~~---v~el~~~l~~-~gi~VI~~GL~~DF 128 (234)
T 2orv_A 84 -VAQ--EALGVAVIGIDEGQFFPD---IVEFCEAMAN-AGKTVIVAALDGTF 128 (234)
T ss_dssp -GHH--HHTTCSEEEESSGGGCTT---HHHHHHHHHH-TTCEEEEECCSBCT
T ss_pred -HHH--HhccCCEEEEEchhhhhh---HHHHHHHHHh-CCCEEEEEeccccc
Confidence 122 237799999999952211 4444444433 56666666666443
No 389
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.81 E-value=0.0017 Score=54.59 Aligned_cols=109 Identities=11% Similarity=0.098 Sum_probs=62.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC-ChhH--HHHHHHhcccCCCCeeecCCCCCHHHHHHHH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF-RAAA--YEQLLILGKYNDVPVISEKKITDPAAIAFNA 173 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~-~~~~--~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (302)
..|++..+.||-||||||.|-...+.+...+.+|.+...... |.+. ...+... .+........+..
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~-----~~A~~~~~~~d~~------ 86 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNT-----MEALPACLLRDVA------ 86 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHH-----SEEEEESSGGGGH------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCc-----ccceecCCHHHHH------
Confidence 468999999999999997776667776766778888752211 2110 0111110 1111111111111
Q ss_pred HHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881 174 INIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFL 223 (302)
Q Consensus 174 la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l 223 (302)
. ...+.|+|++||.--.+. +.+.+..+. ..|+.+++...|..+
T Consensus 87 -~--~~~~~DvIlIDEaQFfk~---~ve~~~~L~-~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 87 -Q--EALGVAVIGIDEGQFFPD---IVEFCEAMA-NAGKTVIVAALDGTF 129 (195)
T ss_dssp -H--HHHTCSEEEESSGGGCTT---HHHHHHHHH-HTTCEEEEEEESBCT
T ss_pred -H--hccCCCEEEEEchhhhHH---HHHHHHHHH-HCCCeEEEEeccccc
Confidence 1 235689999999942222 455556666 357777777777665
No 390
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.81 E-value=0.0016 Score=52.83 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
.+..+.|.||.|+||||+++.++..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456889999999999999999988754
No 391
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.80 E-value=0.0039 Score=56.20 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
..+.|.||+|+||||+++.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 392
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.80 E-value=0.014 Score=55.31 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
...-.++++|.+|+|||||++.+.+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cccceeEEecCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999863
No 393
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.78 E-value=0.00093 Score=68.82 Aligned_cols=58 Identities=7% Similarity=0.118 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhCC--CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 166 PAAIAFNAINIAQKKN--TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 166 ~~~~~~~~la~al~~~--~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
-.+..+-.||+++..+ |+++|||||+ |+.....+++.|+++.+ .|.++++++||...+
T Consensus 524 GGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i 586 (993)
T 2ygr_A 524 GGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLIVVEHDEDTI 586 (993)
T ss_dssp HHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEEEECCCHHHH
Confidence 3445555699999998 5899999998 88889999999999965 588999999988654
No 394
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.77 E-value=0.0012 Score=60.32 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
.+++|+||+||||||+...|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 395
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.77 E-value=0.0079 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+..+.+.||.|+||||+++.++..+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3577788899999999999999876
No 396
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=0.0033 Score=60.54 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+..+.|.||.|+||||+++.++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4688999999999999999999877
No 397
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.75 E-value=0.019 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
-.++++|..|+|||||++.|.+..
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCHHHHHHHHHhhc
Confidence 468999999999999999998753
No 398
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.74 E-value=0.00098 Score=67.86 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhCCCC--eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881 167 AAIAFNAINIAQKKNTD--IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224 (302)
Q Consensus 167 ~~~~~~~la~al~~~~~--llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv 224 (302)
.+..+-.||+++..+|+ ++|||||+ |+.....+++.|+++.+ .|.++++++||+.++
T Consensus 383 Ge~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVIvVeHdl~~l 444 (842)
T 2vf7_A 383 GELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLFVVEHDLDVI 444 (842)
T ss_dssp HHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEcCCHHHH
Confidence 33444459999999984 99999998 89999999999999965 588999999998743
No 399
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.74 E-value=0.0035 Score=52.65 Aligned_cols=38 Identities=26% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
.+| .+.+.++||.||||..--++-...-.+.+|.+...
T Consensus 27 ~~g-~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 27 ERG-IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CCC-CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCc-eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 345 56678889999999999888887778889999853
No 400
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.73 E-value=0.0016 Score=61.80 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
.+.|.||+|+||||+++.|+....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 588999999999999999998864
No 401
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.72 E-value=0.00096 Score=57.48 Aligned_cols=37 Identities=24% Similarity=0.484 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhC----CCeEEEe
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKR----KKSVLLA 133 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~----~g~V~l~ 133 (302)
.+|.++.|.||.||||||.++.|+..+... +-+|.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 468899999999999999999999988765 6666544
No 402
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.72 E-value=0.0048 Score=55.05 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+..+.|.||.|+||||+++.++..+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998865
No 403
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=96.72 E-value=0.0041 Score=57.50 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
.++.+.|..|+||||+...+|..+...+.+|.+.+.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 467788999999999999999999888889999887
No 404
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.71 E-value=0.0018 Score=55.61 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEE
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLL 132 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l 132 (302)
.+|.++.|.|+.||||||+++.|+..+.. .+-+|.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 46899999999999999999999999887 6656665
No 405
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.70 E-value=0.00078 Score=55.27 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998865
No 406
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.69 E-value=0.01 Score=57.24 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
..+.++.++|++||||||+.+.|+..+....-...+.+.|
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 3457899999999999999999998886554444444444
No 407
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.68 E-value=0.00085 Score=54.26 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999865
No 408
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.68 E-value=0.0031 Score=63.60 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA 133 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~ 133 (302)
..+.|.||+|+|||++++.|+..+...+..+...
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 3688999999999999999999875444444333
No 409
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.68 E-value=0.0013 Score=57.03 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++-+++|.||.||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998765
No 410
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.68 E-value=0.001 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++|.||.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 411
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.66 E-value=0.013 Score=55.93 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++++|..|+|||||++.|.+.
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999765
No 412
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.66 E-value=0.0023 Score=53.10 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=41.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc-cCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC-DTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQK 179 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~-d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~ 179 (302)
++.|+|+.||||||+...++.. ++.+.+.+. ..+...-.+++..+..+....+.....+.+.... +.. ..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~----l~~-~~ 71 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTL----ITA-DL 71 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGT----SCT-TS
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHH----HHh-hc
Confidence 3679999999999999998854 345555443 2222222233444433333334333332332211 110 11
Q ss_pred CCCCeEEEcCCC
Q psy2881 180 KNTDIVIVDTSG 191 (302)
Q Consensus 180 ~~~~llllDEP~ 191 (302)
...+.+|+|.-|
T Consensus 72 ~~~~~VLvDclt 83 (180)
T 1c9k_A 72 APDDAILLECIT 83 (180)
T ss_dssp CTTCEEEEECHH
T ss_pred ccCCeEEEcCHH
Confidence 223799999875
No 413
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.65 E-value=0.0012 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999865
No 414
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.64 E-value=0.0012 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
++++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998653
No 415
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.63 E-value=0.0012 Score=60.29 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
++.++.|+||+||||||+...||..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999765
No 416
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.61 E-value=0.0044 Score=63.37 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
..+.|+||+|+||||+++.++..+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999998754
No 417
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.60 E-value=0.0012 Score=55.70 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++|+||.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 418
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.60 E-value=0.0069 Score=58.58 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-..++|+|+.|||||||+..|++.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~ 36 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLF 36 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh
Confidence 357999999999999999999743
No 419
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.57 E-value=0.0014 Score=55.95 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999866
No 420
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.55 E-value=0.0022 Score=50.71 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.-+.|.||+|+|||++++.|+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhC
Confidence 347899999999999999887754
No 421
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.54 E-value=0.0013 Score=55.65 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 422
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.54 E-value=0.0013 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.||||||+++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 423
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.53 E-value=0.0013 Score=52.23 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.||||||+++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999863
No 424
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.53 E-value=0.0013 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.||||||+++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 425
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.53 E-value=0.0059 Score=54.65 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++.|.||.|+||||+++.++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 689999999999999999998654
No 426
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.52 E-value=0.009 Score=53.44 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
+.-+.|.||+|+|||++++.|+......++.....++
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~ 61 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNC 61 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEEC
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeC
Confidence 3458899999999999999999876554444433333
No 427
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.51 E-value=0.0046 Score=51.83 Aligned_cols=36 Identities=42% Similarity=0.635 Sum_probs=30.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d 136 (302)
+|+|=|+-||||||.++.|+..+...+-+|.+...+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 467889999999999999999998877777765443
No 428
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.49 E-value=0.0017 Score=58.56 Aligned_cols=25 Identities=40% Similarity=0.438 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+.+++|+||+||||||+...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 5689999999999999999998765
No 429
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.46 E-value=0.0018 Score=57.39 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag 121 (302)
..+.+++|.|+.||||||+.+.|+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999984
No 430
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.45 E-value=0.002 Score=55.22 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
..+..+.|+|+.||||||+.+.|+..+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999998763
No 431
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.45 E-value=0.0016 Score=51.53 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag 121 (302)
.++++|+.|||||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999999886
No 432
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.45 E-value=0.0032 Score=55.65 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
.++++.|..|+||||+...||..+...+.+|.+.+.|++.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4677889999999999999999998888899999999864
No 433
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.44 E-value=0.002 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
+.-.++++|+.|||||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999763
No 434
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.44 E-value=0.0016 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.||||||+++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999863
No 435
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0016 Score=51.86 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag 121 (302)
.++++|+.||||||+++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999999986
No 436
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.43 E-value=0.0016 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.||||||+++.+.+-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999764
No 437
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.42 E-value=0.0016 Score=51.76 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag 121 (302)
.++++|+.||||||+++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999999986
No 438
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.42 E-value=0.013 Score=55.86 Aligned_cols=23 Identities=30% Similarity=0.231 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++++|..++|||||++.|.+.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~ 42 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEI 42 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHCC
Confidence 36899999999999999999764
No 439
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.42 E-value=0.0084 Score=54.41 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKR 126 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~ 126 (302)
+..+.|.||.|+||||+++.++..+...
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3478899999999999999999887643
No 440
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.41 E-value=0.0018 Score=61.49 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=30.4
Q ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE
Q psy2881 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132 (302)
Q Consensus 95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l 132 (302)
.+.+|+.++|+||+|+|||||++.|+.......+.+.+
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 34578999999999999999999999887654444444
No 441
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.41 E-value=0.002 Score=58.44 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+.++.|+||+||||||+...|+..+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999865
No 442
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.41 E-value=0.0053 Score=52.35 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
.+|.++.|-|+.||||||.++.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999998875
No 443
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.41 E-value=0.0016 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.|||||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5889999999999999998763
No 444
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.40 E-value=0.002 Score=54.38 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999866
No 445
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.40 E-value=0.0013 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.|||||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998753
No 446
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.39 E-value=0.014 Score=58.21 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-..++|+|+.|+|||||+..|...
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~ 35 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYY 35 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999753
No 447
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.39 E-value=0.0018 Score=51.58 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.||||||+++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999998864
No 448
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.39 E-value=0.0018 Score=51.44 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.||||||+++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 449
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.39 E-value=0.002 Score=54.33 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=25.5
Q ss_pred CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
...-+.+ .|..++|+||+|+|||||...|+...
T Consensus 26 Ha~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 26 HGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3333443 57889999999999999999987643
No 450
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.39 E-value=0.011 Score=58.95 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-..++|+|+.|+|||||++.|.+.
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~ 33 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYY 33 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 451
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.39 E-value=0.0021 Score=54.48 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~ 139 (302)
++.|+||.||||+|..+.|+..+ |=+.+...|..|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----g~~~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----GFVHISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----CCEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCeEEcHHHHHH
Confidence 57899999999999999999876 445566556554
No 452
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.38 E-value=0.0023 Score=57.62 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
.+.+++|+||+||||||+...|+..+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998765
No 453
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.38 E-value=0.0098 Score=57.78 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.+.+++|.||.|+|||||+..++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhc
Confidence 4679999999999999999998764
No 454
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.38 E-value=0.0018 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++++|+.||||||+++.+.+-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36889999999999999998764
No 455
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.37 E-value=0.0018 Score=51.70 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.|||||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999753
No 456
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.36 E-value=0.0019 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.||||||+++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999753
No 457
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.35 E-value=0.0018 Score=53.13 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.-.++++|+.|||||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999863
No 458
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.35 E-value=0.002 Score=51.12 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag 121 (302)
.++++|+.|||||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 459
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=96.34 E-value=0.06 Score=46.84 Aligned_cols=162 Identities=12% Similarity=0.161 Sum_probs=83.3
Q ss_pred eEEEEEcCC-CCCHHHHHHHHHhHhhhCCCeEEEec-----ccCCChhHHHHHHHhcccCC--CCeeecCC---------
Q psy2881 100 FVIMIVGVN-GVGKTTTIGKLANYFKKRKKSVLLAA-----CDTFRAAAYEQLLILGKYND--VPVISEKK--------- 162 (302)
Q Consensus 100 ~ii~lvGpn-GsGKTTll~~Lag~~~~~~g~V~l~~-----~d~~~~~~~~ql~~~~~~~~--~~~~~~~~--------- 162 (302)
..+.|.|.. |+||||+...|+..+...+.+|.+.- ..... .....++....... -++.....
T Consensus 27 ~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~-~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~ 105 (251)
T 3fgn_A 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGD-DDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEH 105 (251)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTC-CHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCC-HHHHHHHHHcCCCCCCCCeeECCCCChHHHHHH
Confidence 568889965 99999999999999998887887652 11100 11122222221100 01111110
Q ss_pred ----CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH-HHHHHHHHHHHHhchhhccccceeehhhcCCCCh--h
Q psy2881 163 ----ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS-HLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQ--N 232 (302)
Q Consensus 163 ----~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~-~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~--~ 232 (302)
..+. ..+.+.+. .+..++|++|+|.|+ ++-+.. .. ..++++..+ ..+.+|.+...+. .
T Consensus 106 ~~~~~~~~-~~i~~~~~-~l~~~~D~vlIEGagGl~~pl~~~~~~---~adla~~l~-------~pVILV~~~~~g~i~~ 173 (251)
T 3fgn_A 106 AGMALPAR-DQIVRLIA-DLDRPGRLTLVEGAGGLLVELAEPGVT---LRDVAVDVA-------AAALVVVTADLGTLNH 173 (251)
T ss_dssp TTCCCCCH-HHHHHHHH-TTCCTTCEEEEECSSSTTCEEETTTEE---HHHHHHHTT-------CEEEEEECSSTTHHHH
T ss_pred cCCCCCCH-HHHHHHHH-HHHhcCCEEEEECCCCCcCCcCcccch---HHHHHHHcC-------CCEEEEEcCCCccHHH
Confidence 0111 12223232 245789999999996 331211 01 112333222 2344555555443 2
Q ss_pred HHHHHHHH-HhhcCCCeEEEecCCCCC--chhHHHHhhhHhCCceE
Q psy2881 233 TLSQIKEF-SKILRITGLIITKLDGTT--KGGILAAIAKKYSIPLY 275 (302)
Q Consensus 233 ~~~~~~~f-~~~~~~~~~i~tk~d~~~--~~g~~~~~~~~~~~pv~ 275 (302)
.+...+.+ .....+.++|++++.+.. ........+.+. +|+.
T Consensus 174 ~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~-vpvL 218 (251)
T 3fgn_A 174 TKLTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI-AMVR 218 (251)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH-SCEE
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh-CCEE
Confidence 33333333 335677899999986432 223345556666 8866
No 460
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.34 E-value=0.0011 Score=60.94 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhHhhhCCC
Q psy2881 102 IMIVGVNGVGKTTTIGKLANYFKKRKK 128 (302)
Q Consensus 102 i~lvGpnGsGKTTll~~Lag~~~~~~g 128 (302)
++|+|++|+|||||++.|.+......+
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC----
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 489999999999999999876443333
No 461
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.33 E-value=0.002 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++++|+.|||||||++.+.+-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36889999999999999999874
No 462
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=96.33 E-value=0.0029 Score=52.08 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881 166 PAAIAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI 221 (302)
Q Consensus 166 ~~~~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~ 221 (302)
..+...-+||++++ .+|+++|+|||+ |+.+...+.+.|+++.+ +.++++++|+.
T Consensus 67 gGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~ 127 (173)
T 3kta_B 67 GGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD 127 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH
Confidence 34455566888886 557999999997 99999999999988754 34566777864
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.32 E-value=0.0022 Score=56.88 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++.|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999873
No 464
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.32 E-value=0.0024 Score=53.43 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
...+++|+|+.||||||+.+.|+..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998764
No 465
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.32 E-value=0.0021 Score=51.04 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag 121 (302)
.++++|+.||||||+++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999999986
No 466
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.32 E-value=0.0019 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.|||||||++.+.+-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999998764
No 467
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.31 E-value=0.0021 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.-.++++|++|||||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998763
No 468
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.30 E-value=0.006 Score=55.01 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881 69 NTEQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 69 ~~~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag 121 (302)
........+...|...+.+ .++...+.+ .|.-++|.|++|+||||++..|..
T Consensus 113 ~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 113 ATTQLMSRLTTFLEHELARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp CHHHHHHHHHHHHHHHTCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 3444455566666665543 456666666 688899999999999999988876
No 469
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.29 E-value=0.0019 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.||||||+++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999863
No 470
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.28 E-value=0.0021 Score=56.82 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++|+|++|||||||++.++|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999985
No 471
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.27 E-value=0.0022 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++|+|+.|||||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 472
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.27 E-value=0.0018 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag 121 (302)
.++++|+.|||||||++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999875
No 473
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.26 E-value=0.013 Score=55.39 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=22.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag 121 (302)
...-.+..+.|+.|+||||++..++.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35568999999999999999988764
No 474
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.26 E-value=0.0023 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++++|+.||||||+++.+++-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36889999999999999999863
No 475
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.26 E-value=0.0022 Score=54.10 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998865
No 476
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.25 E-value=0.0023 Score=51.90 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.|||||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999863
No 477
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.25 E-value=0.0045 Score=52.25 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~ 135 (302)
|.+|+|=|+-||||||.++.|+..+. .+.+|.+.-.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~e 37 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTRE 37 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEES
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeC
Confidence 57899999999999999999999886 3556665433
No 478
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.25 E-value=0.0029 Score=54.44 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
+|.+++|.|+.||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998764
No 479
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.25 E-value=0.0023 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy2881 101 VIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag 121 (302)
.++++|+.|||||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999999875
No 480
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.24 E-value=0.0024 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++|+|+.|||||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999863
No 481
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.23 E-value=0.0025 Score=50.50 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhH
Q psy2881 102 IMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 102 i~lvGpnGsGKTTll~~Lag~ 122 (302)
++++|+.||||||+++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 482
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.23 E-value=0.0054 Score=58.36 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFK 124 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~ 124 (302)
.-+.|+||+|+||||+++.|+..+.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999874
No 483
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.23 E-value=0.0026 Score=58.65 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag 121 (302)
-.++|+|.+|||||||++.|++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999998
No 484
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.22 E-value=0.0025 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++++|+.|||||||++.+.+-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 485
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.22 E-value=0.0019 Score=52.35 Aligned_cols=23 Identities=43% Similarity=0.755 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLA 120 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~La 120 (302)
+.-.++++|++|||||||++.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45679999999999999998876
No 486
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.21 E-value=0.0036 Score=49.84 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHh
Q psy2881 99 PFVIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 99 g~ii~lvGpnGsGKTTll~~Lag 121 (302)
.-.++++|+.|||||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999965
No 487
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.21 E-value=0.0026 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.|||||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 488
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.21 E-value=0.0025 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
-.++++|+.|||||||++.+++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999998753
No 489
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.20 E-value=0.0026 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++++|+.|||||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36889999999999999999863
No 490
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.19 E-value=0.0052 Score=56.19 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 98 KPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 98 ~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
++..+.|.||+|+||||+++.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999887
No 491
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.19 E-value=0.0027 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++++|+.||||||+++.+.+-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36889999999999999999863
No 492
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.18 E-value=0.0078 Score=56.86 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYFKK 125 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~~~ 125 (302)
.-+.|+||+|+||||+.+.||..+..
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34789999999999999999998753
No 493
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.17 E-value=0.0028 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLAN 121 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag 121 (302)
-.++|+|++|||||||++.+.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3688999999999999987765
No 494
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.17 E-value=0.0078 Score=57.90 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CC-CeEEEecccC
Q psy2881 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK-RK-KSVLLAACDT 137 (302)
Q Consensus 97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~-g~V~l~~~d~ 137 (302)
+.|.++.|+|++||||||+.+.|+..+.. .+ ..+.+.+.|.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 46789999999999999999999999875 43 3455666554
No 495
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0028 Score=51.02 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.|||||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6889999999999999998764
No 496
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.16 E-value=0.0026 Score=55.19 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++|+|++|||||||++.|.|.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999874
No 497
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.16 E-value=0.07 Score=53.69 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 96 KCKPFVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
+.-+ .++++|..+|||||+++.|.|.-
T Consensus 49 i~lp-~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 49 LDLP-QIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp GCCS-EEEEEECTTTCHHHHHHHHHSSC
T ss_pred CCCC-EEEEECCCCCcHHHHHHHHhCCC
Confidence 3344 57899999999999999999964
No 498
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.15 E-value=0.0028 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~ 122 (302)
-.++++|+.|||||||++.+.+-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999764
No 499
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.15 E-value=0.024 Score=57.06 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881 100 FVIMIVGVNGVGKTTTIGKLANYF 123 (302)
Q Consensus 100 ~ii~lvGpnGsGKTTll~~Lag~~ 123 (302)
..+.|.||+|+|||++++.|+..+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 468899999999999999999987
No 500
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.14 E-value=0.0028 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhH
Q psy2881 101 VIMIVGVNGVGKTTTIGKLANY 122 (302)
Q Consensus 101 ii~lvGpnGsGKTTll~~Lag~ 122 (302)
.++++|+.|||||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
Done!