Your job contains 1 sequence.
>psy2881
MKINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKK
IIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLA
NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKK
NTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEF
SKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN
QN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2881
(302 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P10121 - symbol:ftsY "SRP receptor" species:833... 617 3.1e-60 1
TIGR_CMR|CPS_0157 - symbol:CPS_0157 "signal recognition p... 617 3.1e-60 1
TIGR_CMR|CBU_1903 - symbol:CBU_1903 "signal recognition p... 610 1.7e-59 1
TIGR_CMR|SO_4586 - symbol:SO_4586 "signal recognition par... 600 1.9e-58 1
TIGR_CMR|VC_0147 - symbol:VC_0147 "signal recognition par... 595 6.6e-58 1
TIGR_CMR|CHY_1442 - symbol:CHY_1442 "signal recognition p... 579 3.3e-56 1
TIGR_CMR|GSU_1132 - symbol:GSU_1132 "signal recognition p... 526 1.3e-50 1
TIGR_CMR|ECH_1111 - symbol:ECH_1111 "signal recognition p... 522 3.6e-50 1
TIGR_CMR|BA_3985 - symbol:BA_3985 "signal recognition par... 500 7.7e-48 1
TIGR_CMR|SPO_1339 - symbol:SPO_1339 "signal recognition p... 500 7.7e-48 1
TIGR_CMR|NSE_0545 - symbol:NSE_0545 "signal recognition p... 497 1.6e-47 1
UNIPROTKB|Q97QH0 - symbol:ftsY "Signal recognition partic... 491 6.9e-47 1
UNIPROTKB|P83749 - symbol:ftsY "Signal recognition partic... 466 3.1e-44 1
TIGR_CMR|APH_1227 - symbol:APH_1227 "signal recognition p... 454 5.7e-43 1
TIGR_CMR|CJE_1340 - symbol:CJE_1340 "signal recognition p... 444 6.6e-42 1
TIGR_CMR|CJE_0809 - symbol:CJE_0809 "signal recognition p... 387 7.2e-36 1
UNIPROTKB|P66842 - symbol:ftsY "Signal recognition partic... 369 5.8e-34 1
TIGR_CMR|BA_3983 - symbol:BA_3983 "signal recognition par... 347 1.3e-31 1
TIGR_CMR|CHY_1434 - symbol:CHY_1434 "signal recognition p... 341 5.4e-31 1
TIGR_CMR|ECH_0475 - symbol:ECH_0475 "signal recognition p... 340 6.9e-31 1
TAIR|locus:2037803 - symbol:ATHSRP54A "signal recognition... 337 1.4e-30 1
TAIR|locus:2150620 - symbol:CPSRP54 "chloroplast signal r... 339 2.7e-30 1
TAIR|locus:2028563 - symbol:AT1G48900 species:3702 "Arabi... 335 2.8e-30 1
POMBASE|SPCC188.06c - symbol:srp54 "signal recognition pa... 325 6.5e-29 1
TIGR_CMR|VC_0560 - symbol:VC_0560 "signal recognition par... 319 1.2e-28 1
UNIPROTKB|Q97QD2 - symbol:ffh "Signal recognition particl... 322 1.4e-28 1
TIGR_CMR|GSU_0642 - symbol:GSU_0642 "signal recognition p... 311 8.2e-28 1
TIGR_CMR|CBU_0450 - symbol:CBU_0450 "signal recognition p... 310 1.2e-27 1
FB|FBgn0010747 - symbol:Srp54k "Signal recognition partic... 313 2.2e-27 1
TIGR_CMR|CPS_4073 - symbol:CPS_4073 "signal recognition p... 307 3.0e-27 1
CGD|CAL0003314 - symbol:SRP54 species:5476 "Candida albic... 310 4.2e-27 1
UNIPROTKB|O07347 - symbol:ffh "Signal recognition particl... 303 5.7e-27 1
TIGR_CMR|SO_1356 - symbol:SO_1356 "signal recognition par... 304 5.9e-27 1
ZFIN|ZDB-GENE-040426-818 - symbol:srp54 "signal recogniti... 303 1.6e-26 1
TAIR|locus:2157809 - symbol:AT5G49500 "AT5G49500" species... 302 1.9e-26 1
TIGR_CMR|NSE_0540 - symbol:NSE_0540 "signal recognition p... 299 2.0e-26 1
UNIPROTKB|Q2T9U1 - symbol:SRP54 "Signal recognition parti... 302 2.1e-26 1
UNIPROTKB|P61010 - symbol:SRP54 "Signal recognition parti... 302 2.1e-26 1
UNIPROTKB|P61011 - symbol:SRP54 "Signal recognition parti... 302 2.1e-26 1
UNIPROTKB|F2Z5M9 - symbol:SRP54 "Uncharacterized protein"... 302 2.1e-26 1
UNIPROTKB|Q4R965 - symbol:SRP54 "Signal recognition parti... 302 2.1e-26 1
UNIPROTKB|Q5R4R6 - symbol:SRP54 "Signal recognition parti... 302 2.1e-26 1
UNIPROTKB|P0AGD7 - symbol:ffh species:83333 "Escherichia ... 298 2.9e-26 1
UNIPROTKB|P66844 - symbol:ffh "Signal recognition particl... 301 3.3e-26 1
RGD|2323636 - symbol:Fam177a1 "family with sequence simil... 300 3.3e-26 1
RGD|621390 - symbol:Srp54 "signal recognition particle 54... 300 3.5e-26 1
SGD|S000006292 - symbol:SRP54 "Signal recognition particl... 300 4.8e-26 1
TIGR_CMR|APH_0349 - symbol:APH_0349 "signal recognition p... 294 7.7e-26 1
UNIPROTKB|E1C6G6 - symbol:SRP54 "Uncharacterized protein"... 296 9.7e-26 1
DICTYBASE|DDB_G0275455 - symbol:srp54 "signal recognition... 294 2.2e-25 1
UNIPROTKB|G3V4F7 - symbol:SRP54 "Signal recognition parti... 289 2.5e-25 1
WB|WBGene00009012 - symbol:F21D5.7 species:6239 "Caenorha... 289 5.5e-25 1
GENEDB_PFALCIPARUM|PF14_0477 - symbol:PF14_0477 "signal r... 287 9.4e-25 1
UNIPROTKB|Q8IKX4 - symbol:PF14_0477 "Signal recognition p... 287 9.4e-25 1
NCBI_NP|NP_355632.2 - symbol:ffh "signal recognition part... 282 4.1e-24 1
TIGR_CMR|SPO_3246 - symbol:SPO_3246 "signal recognition p... 269 1.0e-22 1
TAIR|locus:2118701 - symbol:AT4G30600 species:3702 "Arabi... 265 5.0e-22 1
WB|WBGene00009521 - symbol:F38A1.8 species:6239 "Caenorha... 240 2.4e-19 1
ASPGD|ASPL0000006202 - symbol:AN6627 species:162425 "Emer... 237 5.3e-19 1
POMBASE|SPBC3B9.03 - symbol:SPBC3B9.03 "signal recognitio... 235 6.3e-19 1
CGD|CAL0003010 - symbol:orf19.3952 species:5476 "Candida ... 212 3.8e-18 2
TIGR_CMR|CJE_0061 - symbol:CJE_0061 "flagellar biosynthet... 212 1.5e-16 1
DICTYBASE|DDB_G0277377 - symbol:srpR "signal recognition ... 212 2.5e-16 1
UNIPROTKB|P08240 - symbol:SRPR "Signal recognition partic... 204 1.9e-15 1
UNIPROTKB|F1NXV4 - symbol:SRPR "Uncharacterized protein" ... 204 2.0e-15 1
TIGR_CMR|CHY_1010 - symbol:CHY_1010 "flagellar biosynthes... 197 2.4e-15 1
MGI|MGI:1914648 - symbol:Srpr "signal recognition particl... 203 2.5e-15 1
RGD|1311504 - symbol:Srpr "signal recognition particle re... 203 2.5e-15 1
UNIPROTKB|Q3MHE8 - symbol:SRPR "Signal recognition partic... 203 2.5e-15 1
UNIPROTKB|J9NTJ9 - symbol:SRPR "Signal recognition partic... 201 4.0e-15 1
UNIPROTKB|F1PLH3 - symbol:SRPR "Signal recognition partic... 201 4.1e-15 1
UNIPROTKB|F1S754 - symbol:SRPR "Uncharacterized protein" ... 200 5.2e-15 1
UNIPROTKB|J9P788 - symbol:SRPR "Signal recognition partic... 201 5.6e-15 1
SGD|S000002700 - symbol:SRP101 "Signal recognition partic... 151 1.0e-14 2
UNIPROTKB|P06625 - symbol:SRPR "Signal recognition partic... 196 1.4e-14 1
UNIPROTKB|Q3V8C7 - symbol:flhF "Flagellar biogenesis prot... 191 2.0e-13 1
TIGR_CMR|GSU_3055 - symbol:GSU_3055 "flagellar biosynthet... 191 2.0e-13 1
UNIPROTKB|Q485K6 - symbol:flhF "Flagellar biosynthetic pr... 184 3.1e-12 1
TIGR_CMR|CPS_1517 - symbol:CPS_1517 "flagellar biosynthet... 184 3.1e-12 1
UNIPROTKB|Q8ECD1 - symbol:flhF "Flagellar polar localizat... 181 6.5e-12 1
TIGR_CMR|SO_3212 - symbol:SO_3212 "flagellar biosynthetic... 181 6.5e-12 1
UNIPROTKB|Q48GG0 - symbol:flhF "Flagellar biosynthesis pr... 168 2.9e-10 1
UNIPROTKB|Q9KQD2 - symbol:VC_2068 "Flagellar biosynthetic... 166 6.3e-10 1
TIGR_CMR|VC_2068 - symbol:VC_2068 "flagellar biosynthetic... 166 6.3e-10 1
ZFIN|ZDB-GENE-030219-11 - symbol:srpr "signal recognition... 162 3.0e-09 1
UNIPROTKB|Q722L6 - symbol:LMOf2365_0717 "Putative flagell... 156 7.0e-09 1
UNIPROTKB|Q81SE2 - symbol:BA_1718 "Putative flagellar bio... 149 1.6e-08 1
TIGR_CMR|BA_1718 - symbol:BA_1718 "flagellar biosynthetic... 149 1.6e-08 1
UNIPROTKB|F1MNJ2 - symbol:SRPR "Signal recognition partic... 155 1.8e-08 1
FB|FBgn0010391 - symbol:Gtp-bp "GTP-binding protein" spec... 148 1.3e-07 1
TAIR|locus:2158103 - symbol:AT5G66970 species:3702 "Arabi... 106 0.00049 1
>UNIPROTKB|P10121 [details] [associations]
symbol:ftsY "SRP receptor" species:83333 "Escherichia coli
K-12" [GO:0006184 "GTP catabolic process" evidence=IEA;IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0031226 "intrinsic to
plasma membrane" evidence=IDA] [GO:0003924 "GTPase activity"
evidence=IDA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA;IDA] [GO:0005525 "GTP binding"
evidence=IEA;IDA] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005829 EMBL:U00039
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003924 GO:GO:0031226 EMBL:X04398
PIR:S03130 RefSeq:NP_417921.1 RefSeq:YP_491970.1 PDB:1FTS PDB:2QY9
PDB:2XXA PDB:2YHS PDBsum:1FTS PDBsum:2QY9 PDBsum:2XXA PDBsum:2YHS
ProteinModelPortal:P10121 SMR:P10121 DIP:DIP-9709N IntAct:P10121
MINT:MINT-1247716 TCDB:3.A.5.1.1 PRIDE:P10121
EnsemblBacteria:EBESCT00000004496 EnsemblBacteria:EBESCT00000016891
GeneID:12933505 GeneID:947978 KEGG:ecj:Y75_p3714 KEGG:eco:b3464
PATRIC:32122372 EchoBASE:EB0342 EcoGene:EG10346 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 OMA:AETNAEY ProtClustDB:PRK10416
BioCyc:EcoCyc:EG10346-MONOMER BioCyc:ECOL316407:JW3429-MONOMER
EvolutionaryTrace:P10121 Genevestigator:P10121 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 Uniprot:P10121
Length = 497
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 134/301 (44%), Positives = 186/301 (61%)
Query: 2 KINWITRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
K + RLK SL KT NL S L KKID +L+ ELE LL ADVG ETT+ ++
Sbjct: 192 KEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITN 251
Query: 58 LKKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
L + K+L + E +++PL + PFVI++VGVNGVGKTTTIG
Sbjct: 252 LTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIG 311
Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXX 177
KLA F+++ KSV+LAA DTFRAAA EQL + G+ N++PVI++ D
Sbjct: 312 KLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371
Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQI 237
+ +N D++I DT+GRL +SHLM EL E P+E+ L ID +TGQN +SQ
Sbjct: 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA 431
Query: 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNA 297
K F + + +TG+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ A
Sbjct: 432 KLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEA 491
Query: 298 L 298
L
Sbjct: 492 L 492
>TIGR_CMR|CPS_0157 [details] [associations]
symbol:CPS_0157 "signal recognition particle-docking
protein FtsY" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0003924 "GTPase
activity" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0031226
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_266925.1
ProteinModelPortal:Q48AI8 SMR:Q48AI8 STRING:Q48AI8 GeneID:3519649
KEGG:cps:CPS_0157 PATRIC:21463731 OMA:VEAVAIQ
BioCyc:CPSY167879:GI48-260-MONOMER Uniprot:Q48AI8
Length = 481
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 131/305 (42%), Positives = 189/305 (61%)
Query: 2 KINWITRLKESLSKTACNLKSLIVN----KKIDKNLYNELESDLLKADVGFETTQFLLNE 57
K+ + RLK+ LSKT NL +++ K+ID +L+ ELE+ LL ADVG ETT ++
Sbjct: 177 KLGFFARLKQGLSKTRQNLGGGLIDLFRGKQIDDDLFEELETHLLLADVGVETTMKIIES 236
Query: 58 LKKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCK-PFVIMIVGVNGVGKTTTI 116
L + K+L + + + +PL+ + PFVI++VGVNGVGKTTTI
Sbjct: 237 LTQSANRKQLKDASALYDLLKIELKKVIEDVSQPLVIPEDDGPFVILMVGVNGVGKTTTI 296
Query: 117 GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXX 176
GKLA F+ + KSV+LAA DTFRAAA EQL + G+ N++PVI++ D
Sbjct: 297 GKLAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSASVIFDAISA 356
Query: 177 XQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQ 236
+ + DI+I DT+GRL ++HLM EL P+E+ L +D TGQN LSQ
Sbjct: 357 AKARKVDIIIADTAGRLQNKAHLMEELKKVVRVMKKLDVNAPHEVMLTLDAGTGQNALSQ 416
Query: 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVN 296
K F + + +TGL ITKLDGT KGG++ A+A K+SIP+ ++G+GE I+DL+ FN+ DF++
Sbjct: 417 TKLFDEAVGLTGLTITKLDGTAKGGVIFAVADKHSIPIRYLGVGEGIDDLRPFNSDDFID 476
Query: 297 ALLNQ 301
AL ++
Sbjct: 477 ALFSK 481
>TIGR_CMR|CBU_1903 [details] [associations]
symbol:CBU_1903 "signal recognition particle-docking
protein FtsY" species:227377 "Coxiella burnetii RSA 493"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0051301 GO:GO:0003924 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:NRIPDEL
RefSeq:NP_820880.1 HSSP:P10121 ProteinModelPortal:Q83AI3 SMR:Q83AI3
PRIDE:Q83AI3 GeneID:1209816 KEGG:cbu:CBU_1903 PATRIC:17932545
BioCyc:CBUR227377:GJ7S-1878-MONOMER Uniprot:Q83AI3
Length = 324
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 133/305 (43%), Positives = 185/305 (60%)
Query: 2 KINWITRLKESLSKTACNL----KSLIVNKK-IDKNLYNELESDLLKADVGFETTQFLLN 56
K W+ RL ESL +T L +L++ KK ID +L ELE LL AD+G E TQ +LN
Sbjct: 21 KKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIEATQSILN 80
Query: 57 ELKKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTI 116
L + + K L + + + +K L PFVI+ VGVNGVGKTTTI
Sbjct: 81 NLSQQVARKSLSDPKALIDALKIELLNILEPCQKHLEIS-ASPFVILTVGVNGVGKTTTI 139
Query: 117 GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXX 176
KLA++++ +KK V+LAA DTFRAAA EQL G+ N+ PVI+++ D
Sbjct: 140 AKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSASVIYDAMEA 199
Query: 177 XQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQ 236
++ D++I DT+GRL TQSHLM EL + P+E L++D TGQN ++Q
Sbjct: 200 ATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAGTGQNAINQ 259
Query: 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVN 296
++F + + +TG+ ITKLDGT KGG++ AIAKK +P+ FIG+GEKIEDL+ FNA +F+
Sbjct: 260 AEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKPFNAKEFIA 319
Query: 297 ALLNQ 301
AL +
Sbjct: 320 ALFKE 324
>TIGR_CMR|SO_4586 [details] [associations]
symbol:SO_4586 "signal recognition particle-docking protein
FtsY" species:211586 "Shewanella oneidensis MR-1" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0003924 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0031226 HOGENOM:HOG000036278
KO:K03110 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
HSSP:P10121 RefSeq:NP_720102.1 ProteinModelPortal:Q8E8S5 SMR:Q8E8S5
GeneID:1172171 KEGG:son:SO_4586 PATRIC:23528839 OMA:PDNANGP
Uniprot:Q8E8S5
Length = 510
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 130/305 (42%), Positives = 186/305 (60%)
Query: 2 KINWITRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
K ++ RLK L +T+ N+ S L KKID L+ ELE LL ADVG ETT L+
Sbjct: 201 KESFFARLKRGLMRTSENIGSGFIGLFRGKKIDDELFEELEEQLLIADVGVETTGRLIKS 260
Query: 58 LKKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCK-PFVIMIVGVNGVGKTTTI 116
L + K+L + E + PL+ + PFVI++VGVNGVGKTTTI
Sbjct: 261 LTEHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPENANGPFVILMVGVNGVGKTTTI 320
Query: 117 GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXX 176
GKLA ++++ KSV+LAA DTFRAAA EQL + G+ N++PV+++ D
Sbjct: 321 GKLAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQA 380
Query: 177 XQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQ 236
+ + D++I DT+GRL +SHLM EL E P+E+ L +D +TGQN +SQ
Sbjct: 381 AKARKIDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQ 440
Query: 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVN 296
+ F + + +TG+ I+KLDGT KGG++ AIA K+ IPL +IG+GE+I+DL+ FN+ +F++
Sbjct: 441 AQLFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEFID 500
Query: 297 ALLNQ 301
AL Q
Sbjct: 501 ALFTQ 505
>TIGR_CMR|VC_0147 [details] [associations]
symbol:VC_0147 "signal recognition particle-docking protein
FtsY" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0051301 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 OMA:VEAVAIQ HSSP:P10121 PIR:B82360
RefSeq:NP_229805.1 ProteinModelPortal:Q9KVJ6 SMR:Q9KVJ6
DNASU:2614855 GeneID:2614855 KEGG:vch:VC0147 PATRIC:20079332
Uniprot:Q9KVJ6
Length = 391
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 130/303 (42%), Positives = 183/303 (60%)
Query: 4 NWITRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELK 59
++ RLK SLS+T N+ + L KKID +L+ ELE LL ADVG +TT ++ L
Sbjct: 87 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 146
Query: 60 KIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFK-KCKPFVIMIVGVNGVGKTTTIGK 118
++L + E +E+PL+ + KP+VI++VGVNGVGKTTTIGK
Sbjct: 147 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 206
Query: 119 LANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQ 178
LA F+ + K V+LAA DTFRAAA EQL + G+ N VPVI++ D +
Sbjct: 207 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 266
Query: 179 KKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIK 238
+ D+VI DT+GRL +S+LM EL P+EI L +D TGQN +SQ K
Sbjct: 267 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 326
Query: 239 EFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
FS + ITG+ +TKLDGT KGG++ AIA ++ IP+ +IG+GEKI+DL+ F +F++AL
Sbjct: 327 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDAL 386
Query: 299 LNQ 301
++
Sbjct: 387 FSR 389
>TIGR_CMR|CHY_1442 [details] [associations]
symbol:CHY_1442 "signal recognition particle-docking
protein FtsY" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047
"signal recognition particle binding" evidence=ISS] [GO:0009306
"protein secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003924 GO:GO:0031226
eggNOG:COG0552 KO:K03110 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 RefSeq:YP_360274.1 ProteinModelPortal:Q3AC60
SMR:Q3AC60 STRING:Q3AC60 GeneID:3728659 KEGG:chy:CHY_1442
PATRIC:21276015 HOGENOM:HOG000036277 OMA:NRIPDEL
BioCyc:CHYD246194:GJCN-1441-MONOMER Uniprot:Q3AC60
Length = 303
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 128/302 (42%), Positives = 185/302 (61%)
Query: 3 INWITRLKESLSKTACNLKSLI--VNKK--IDKNLYNELESDLLKADVGFETTQFLLNEL 58
+ + RLKESL KT N+ + I V KK +D+ L+ +LE L++ DVG + + L+ +L
Sbjct: 1 MGFFDRLKESLIKTKQNIVAKIEDVFKKSTVDEELFEKLEEILIEGDVGVKPSLELVEKL 60
Query: 59 KKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGK 118
+K +++ ++EQ ++ + L P VI++VGVNGVGKTTTIGK
Sbjct: 61 RKTARERRITDSEQLKQVLKEEILKILEAGDNKLKNVPRTPLVILVVGVNGVGKTTTIGK 120
Query: 119 LANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQ 178
LA YFK++ K VLLAA DTFRAAA EQL I G PVI +K+ +DP
Sbjct: 121 LAYYFKQQGKQVLLAAGDTFRAAAIEQLEIWGNKVGCPVIKQKEGSDPAAVAFDAVKAAI 180
Query: 179 KKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIK 238
+ D++I+DT+GRL T+++LM EL P E+ L++D TGQN LSQ++
Sbjct: 181 ARKIDVLIIDTAGRLHTKTNLMEELRKVKRVIERELPGAPDEVLLVLDATTGQNALSQVE 240
Query: 239 EFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
F+K L +TGL++TKLDGT KGG++ I Y IP+ FIG+GEK++DL+ F+ +FV AL
Sbjct: 241 YFNKALDLTGLVLTKLDGTAKGGVIIGIKSSYQIPIKFIGVGEKMDDLRPFDPQEFVEAL 300
Query: 299 LN 300
+
Sbjct: 301 FS 302
>TIGR_CMR|GSU_1132 [details] [associations]
symbol:GSU_1132 "signal recognition particle-docking
protein FtsY" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:NP_952185.1
ProteinModelPortal:Q74E32 SMR:Q74E32 GeneID:2686843
KEGG:gsu:GSU1132 PATRIC:22025026 OMA:HLMAELE
BioCyc:GSUL243231:GH27-1142-MONOMER Uniprot:Q74E32
Length = 350
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 126/296 (42%), Positives = 168/296 (56%)
Query: 8 RLKESLSKTACNLKS----LIVNKK-IDKNLYNELESDLLKADVGFETTQFLLNELKKII 62
RLK+ LSKT +L L++ KK ID + ELE L+ AD+G +TT L+ L++ +
Sbjct: 53 RLKQGLSKTRDSLVGRIDRLVLGKKEIDADTLEELEEILITADLGVQTTVELIRGLEQRL 112
Query: 63 YSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
+L + E L PFVIM++GVNGVGKTTTIGKLA
Sbjct: 113 SRNELKDGEALREALKEDIHGRLARDAHQLDVTGASPFVIMVIGVNGVGKTTTIGKLAAR 172
Query: 123 FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNT 182
F + K V+LAA DTFRAAA EQL I G+ V VI K+ DP +
Sbjct: 173 FTAQGKKVILAAGDTFRAAAAEQLQIWGERTGVDVIRHKEGADPSAVVFDSIKAAVARGA 232
Query: 183 DIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSK 242
DI+IVDT+GRL T+ +LM EL P+E L++D TGQN LSQ K F +
Sbjct: 233 DILIVDTAGRLHTKVNLMEELKKVRRIMSREIPGAPHETLLVLDAATGQNALSQAKLFKE 292
Query: 243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
++TG+ +TKLDGT KGGI+ AI ++ IP+ +IG+GE I+DL+ F+ FV AL
Sbjct: 293 AAQVTGIALTKLDGTAKGGIVVAICNEFRIPVRYIGVGEGIDDLRDFDPSQFVEAL 348
>TIGR_CMR|ECH_1111 [details] [associations]
symbol:ECH_1111 "signal recognition particle-docking
protein FtsY" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006184 GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_507895.1
ProteinModelPortal:Q2GF88 STRING:Q2GF88 GeneID:3927733
KEGG:ech:ECH_1111 PATRIC:20577558 OMA:ADMGVET
BioCyc:ECHA205920:GJNR-1114-MONOMER Uniprot:Q2GF88
Length = 310
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 116/303 (38%), Positives = 170/303 (56%)
Query: 5 WITRLKESLSKTACNL-----KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELK 59
+ + +K+ L KT+ L K KK+D+ EL+ L+ ADVG++ L +L
Sbjct: 9 FFSNIKKGLFKTSSKLSDGIKKIFSSGKKVDQETLEELKELLITADVGYDNASLLTQKLA 68
Query: 60 KIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKL 119
+++ NT + +EKPL KP VIM+ G NG GKTTTIGKL
Sbjct: 69 STKFNEMDDNTVKQKLAESIENILL--QVEKPLSINN-KPHVIMVCGTNGNGKTTTIGKL 125
Query: 120 ANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQK 179
A+ FK K VL+AACDTFRAAA EQL++ + + PV++ + D
Sbjct: 126 AHRFKNTGKKVLVAACDTFRAAATEQLIVWSQKVNFPVVTGNQGADAASIAYQAMQQALN 185
Query: 180 KNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKE 239
+ TD++++DT+GRL +LM EL P+++ LI+D TGQN ++Q+
Sbjct: 186 EQTDVLLIDTAGRLHNHKNLMEELAKIRRIINKHDNNAPHDVILILDATTGQNAVNQVDA 245
Query: 240 FSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
F + + I+GLIITKLDGT KGG++ IA+KY + ++ IGIGE +E LQ F+A +F LL
Sbjct: 246 FLQFVNISGLIITKLDGTAKGGVVIRIAQKYKLNIHAIGIGESVEQLQDFSAKEFAAGLL 305
Query: 300 NQN 302
+ N
Sbjct: 306 DIN 308
>TIGR_CMR|BA_3985 [details] [associations]
symbol:BA_3985 "signal recognition particle-docking protein
FtsY" species:198094 "Bacillus anthracis str. Ames" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 HSSP:P83749 HOGENOM:HOG000036277
RefSeq:NP_846227.1 RefSeq:YP_020624.1 RefSeq:YP_029949.1
ProteinModelPortal:Q81WJ0 SMR:Q81WJ0 DNASU:1086789
EnsemblBacteria:EBBACT00000008913 EnsemblBacteria:EBBACT00000016260
EnsemblBacteria:EBBACT00000019469 GeneID:1086789 GeneID:2817443
GeneID:2848220 KEGG:ban:BA_3985 KEGG:bar:GBAA_3985 KEGG:bat:BAS3698
OMA:LVYRYRK BioCyc:BANT260799:GJAJ-3756-MONOMER
BioCyc:BANT261594:GJ7F-3873-MONOMER Uniprot:Q81WJ0
Length = 329
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 112/299 (37%), Positives = 168/299 (56%)
Query: 8 RLKESLSKT----ACNLKSLIVN-KKIDKNLYNELESDLLKADVGFETTQFLLNELKKII 62
+ K+ L KT A + L+ +K+D++ + ELE L+ ADVG T L+++LK+ +
Sbjct: 21 KFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVSTVMELIDQLKEEV 80
Query: 63 YSKKLFNTEQXXXXXXXXXXXXXKS---LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKL 119
+ + + + K + +K V++ VGVNGVGKTTTIGK+
Sbjct: 81 QRRNIQDPREVQAVISEKLIEIYKGDSDFTNEVNMQKDGLTVVLFVGVNGVGKTTTIGKM 140
Query: 120 ANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQK 179
A+ FK KSVLLAA DTFRA A EQL + G V VI + +DP +
Sbjct: 141 AHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDPAAVMYDAVQAAKA 200
Query: 180 KNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKE 239
+N D+++ DT+GRL + +LM+EL P+E+ L+ID TGQN LSQ K
Sbjct: 201 RNVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVIDATTGQNGLSQAKT 260
Query: 240 FSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
F + +TG+++TKLDGT KGGI+ AI + +P+ F+G+GE+++DLQ F+ +V L
Sbjct: 261 FREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDLQQFDPEQYVYGL 319
>TIGR_CMR|SPO_1339 [details] [associations]
symbol:SPO_1339 "signal recognition particle-docking
protein FtsY" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003924 GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_166581.1 ProteinModelPortal:Q5LTS4 SMR:Q5LTS4
GeneID:3192959 KEGG:sil:SPO1339 PATRIC:23375989 Uniprot:Q5LTS4
Length = 390
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 101/275 (36%), Positives = 163/275 (59%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
+V + +D ++ +LE L+ AD+G +T + + + +KL +T++
Sbjct: 111 VVRRTLDDDMLEQLEELLIAADMGVDTALRVTANMAEGRIGRKL-STQEIKALLAQEITR 169
Query: 84 XXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY 143
+ + +P+ +P V+++VGVNG GKTTTIGKLA+ FK K V++AA DTFRAAA
Sbjct: 170 IMEPVARPMPLYPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAV 229
Query: 144 EQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMREL 203
EQL + G VPV++ + +DP Q+ D++++DT+GRL ++ LM EL
Sbjct: 230 EQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEDGADLLLIDTAGRLQNRADLMEEL 289
Query: 204 XXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGIL 263
P+ L++D TGQN +SQ++ F K+ ++GL++TKLDGT KGGIL
Sbjct: 290 AKIVRVIRKKDDTAPHNTLLVLDATTGQNAISQVETFQKLADVSGLVMTKLDGTAKGGIL 349
Query: 264 AAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
++A ++ +P++ IG+GE+I+DL F+ DF AL
Sbjct: 350 VSLADRFGLPIHAIGVGEQIDDLAPFDPEDFAAAL 384
>TIGR_CMR|NSE_0545 [details] [associations]
symbol:NSE_0545 "signal recognition particle-docking
protein FtsY" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 GO:GO:0017111 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_506428.1
ProteinModelPortal:Q2GDL8 STRING:Q2GDL8 GeneID:3931766
KEGG:nse:NSE_0545 PATRIC:22681139 OMA:RIISQNQ
BioCyc:NSEN222891:GHFU-564-MONOMER Uniprot:Q2GDL8
Length = 309
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 114/297 (38%), Positives = 167/297 (56%)
Query: 4 NWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIY 63
N IT+ ++ LS + ++ +KI ++ +LE L+ AD+G T+ ++ +KKI
Sbjct: 11 NSITKSRDYLSS---GIDNIFAKEKISESTIEQLEELLISADIGPTVTERIIKTVKKIKV 67
Query: 64 SKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF 123
K + EQ K LIF + P VI+ GVNG GKTTTIGKLA F
Sbjct: 68 -KDGESLEQVKSITREEMKKVLDPTSKKLIFPQTGPQVIVFCGVNGNGKTTTIGKLAYKF 126
Query: 124 KKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTD 183
+ K+V++AACD FRAAA EQL + S + + + D
Sbjct: 127 IQENKTVMIAACDLFRAAAIEQLRFWAERASATFFSSETSKNASGTAYKALEKALEDKVD 186
Query: 184 IVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKI 243
++IVDTSGRL TQ+ LM EL P E+ L +D +TGQN L+Q++ F
Sbjct: 187 VLIVDTSGRLHTQNDLMEELKKICRVLSKLMPSAPNEVILALDASTGQNALNQVQVFKDA 246
Query: 244 LRITGLIITKLDGTTKGGILAAIAKKY-SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
+ +TGL++TKLDGT+KGG++ AIA++Y ++ +YF+G GEKI DL+ F+ +FV+ALL
Sbjct: 247 VNLTGLVVTKLDGTSKGGVIVAIAERYPNLGIYFVGTGEKITDLEEFSPSEFVDALL 303
>UNIPROTKB|Q97QH0 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HSSP:P83749 PIR:D95144
RefSeq:NP_345709.1 ProteinModelPortal:Q97QH0
EnsemblBacteria:EBSTRT00000026851 GeneID:931757 KEGG:spn:SP_1244
PATRIC:19706881 OMA:DEGKSVI Uniprot:Q97QH0
Length = 429
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 112/297 (37%), Positives = 167/297 (56%)
Query: 9 LKESLSKTACNLKSLIVN-KKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL 67
LK++ + L + N + +D+ + ELE L+ +DVG + L EL+ Y KL
Sbjct: 132 LKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELR---YEAKL 188
Query: 68 FNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPF-----VIMIVGVNGVGKTTTIGKLANY 122
N ++ + EK + + F V++ VGVNGVGKTT+IGKLA+
Sbjct: 189 ENAKKPDVLRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKLAHR 248
Query: 123 FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNT 182
+K+ K V+L A DTFRA A QL G+ DVPV++ + DP +
Sbjct: 249 YKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVTEGI 308
Query: 183 DIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSK 242
DI+++DT+GRL + +LM EL E P+E FL +D +TGQN L Q KEFSK
Sbjct: 309 DILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKEFSK 368
Query: 243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
I +TG+++TK+DGT +GG++ AI ++ +IP+ IG GEKI+D+ FN+ +F+ LL
Sbjct: 369 ITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 425
>UNIPROTKB|P83749 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0006184
GO:GO:0017111 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
EMBL:AY484668 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2IYL PDB:2J7P PDB:2Q9A
PDB:2Q9B PDB:2Q9C PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW
PDBsum:2IYL PDBsum:2J7P PDBsum:2Q9A PDBsum:2Q9B PDBsum:2Q9C
PDBsum:2XKV ProteinModelPortal:P83749 SMR:P83749 IntAct:P83749
EvolutionaryTrace:P83749 Uniprot:P83749
Length = 304
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 116/306 (37%), Positives = 164/306 (53%)
Query: 3 INWITRLKESLSKTACNL-KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE---- 57
+ + RLK L+KT L K++ +++ L ELE LL ADVG T+ +L E
Sbjct: 1 MGFFDRLKAGLAKTRERLLKAIPWGGNLEEVL-EELEMALLAADVGLSATEEILQEVRAS 59
Query: 58 ----LKKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKT 113
LK+ + K + E KP+ + K V+++VGVNGVGKT
Sbjct: 60 GRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPV---EPKGRVVLVVGVNGVGKT 116
Query: 114 TTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXX 173
TTI KL Y++ K V+ A DTFRAA QL GK +PVI + TDP
Sbjct: 117 TTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDA 176
Query: 174 XXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNT 233
+ + D++ VDT+GRL T+ +LM EL E P E++L++D TGQN
Sbjct: 177 VQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG 236
Query: 234 LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVD 293
L Q K+F + + +TG+I+TKLDGT KGG+L I + +P+ F+G+GE +DLQ F+
Sbjct: 237 LEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEA 296
Query: 294 FVNALL 299
FV ALL
Sbjct: 297 FVEALL 302
>TIGR_CMR|APH_1227 [details] [associations]
symbol:APH_1227 "signal recognition particle-docking
protein FtsY" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_505757.1 ProteinModelPortal:Q2GIP4 STRING:Q2GIP4
GeneID:3931129 KEGG:aph:APH_1227 PATRIC:20951240
BioCyc:APHA212042:GHPM-1232-MONOMER Uniprot:Q2GIP4
Length = 305
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 100/296 (33%), Positives = 158/296 (53%)
Query: 9 LKESLSKTACNLKSLIVN-----KKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIY 63
LK LSKT+ L I N +D++ L L+ D+G + F ++ + +
Sbjct: 11 LKRGLSKTSARLSEGIRNIFGGKADVDQSTLKALRDLLISTDMGPDVADFFTQKISTLKF 70
Query: 64 SKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF 123
+ + E+ + P+ P +I++ GVNG GKTTT+ KLA+ F
Sbjct: 71 TDSV--AEEVRLKLASEIENFLQPRSAPITITHT-PHIILLCGVNGSGKTTTVAKLAHKF 127
Query: 124 KKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTD 183
K+ SV++ ACDTFRAAA EQL + + P+++ D K+ D
Sbjct: 128 MKKNMSVIIGACDTFRAAAVEQLNVWAERISCPIVTGTIGADAASVAYKTVERAVKEPFD 187
Query: 184 IVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKI 243
+VI+DT+GRL +LM EL + P++I L++D GQNT +Q++ FS
Sbjct: 188 VVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTFTQVEMFSSF 247
Query: 244 LRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
+ + GLI+TKLDGT KGG++ +++KY++ ++ IG GE IEDL+ F+A +F +LL
Sbjct: 248 VDVGGLILTKLDGTAKGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNFAKSLL 303
>TIGR_CMR|CJE_1340 [details] [associations]
symbol:CJE_1340 "signal recognition particle-docking
protein FtsY" species:195099 "Campylobacter jejuni RM1221"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005737 GO:GO:0003924
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0031226
eggNOG:COG0552 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HOGENOM:HOG000036277
RefSeq:YP_179327.1 ProteinModelPortal:Q5HTQ8 STRING:Q5HTQ8
GeneID:3231847 KEGG:cjr:CJE1340 PATRIC:20044480 OMA:DLVTPKQ
BioCyc:CJEJ195099:GJC0-1366-MONOMER Uniprot:Q5HTQ8
Length = 288
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 106/292 (36%), Positives = 161/292 (55%)
Query: 10 KESLSKTACNLKSLI-VNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLF 68
K+ L+KT N+ + NKKI K+L E+ LL+ADV +E + ++ L KK
Sbjct: 6 KKGLAKTLENIVGVKGENKKITKDLLEEI---LLEADVSYEIVEEIIYYLPPQNEVKK-- 60
Query: 69 NTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK 128
E K + KPFV +I+GVNG GKTT+I KLA +K + +
Sbjct: 61 --EDLKRVMGSYFLYEKKETNQE------KPFVELILGVNGAGKTTSIAKLAYLYKNQNQ 112
Query: 129 SVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVD 188
V+L ACDTFRA A EQL + + DV ++ + DP + K+ D VI+D
Sbjct: 113 KVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISKAKAKDFDRVIID 172
Query: 189 TSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITG 248
T+GRL Q +L EL P+ L++DG G + Q K F++++++ G
Sbjct: 173 TAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDG 232
Query: 249 LIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
+IITKLDGT KGG L +IA++ +P++++G+GE++ DLQ FNA +++ LL+
Sbjct: 233 VIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNANAYLDTLLD 284
>TIGR_CMR|CJE_0809 [details] [associations]
symbol:CJE_0809 "signal recognition particle protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
OMA:DSGKTEQ PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_178813.1
ProteinModelPortal:Q5HV72 STRING:Q5HV72 GeneID:3230759
KEGG:cjr:CJE0809 PATRIC:20043363 BioCyc:CJEJ195099:GJC0-824-MONOMER
Uniprot:Q5HV72
Length = 445
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 96/294 (32%), Positives = 149/294 (50%)
Query: 9 LKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLF 68
+ ES K+A N + ++K KN L+ LLKADV + T+ LL +++ + +
Sbjct: 5 VSESF-KSAINKLRFVDDEKALKNALETLKKALLKADVHHKVTKELLTLIEEDVKQNGIG 63
Query: 69 NTE-QXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK 127
+ + +F P V+++ G+ G GKTT+ KLANY K R
Sbjct: 64 QKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRN 123
Query: 128 KSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIV 187
K VL+AACD R AA EQL L + N++ + + DP + D+++V
Sbjct: 124 KKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLV 183
Query: 188 DTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRIT 247
DT+GRL+ LM EL P EIF + D +GQ+ + F++ L I+
Sbjct: 184 DTAGRLAIDEALMNELKAVKDVLN------PDEIFYVADAMSGQDGVKTAASFNEALNIS 237
Query: 248 GLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301
G+I++K D TKGG+ IAK+ IPL FIG+GEK+ DL++F V+ ++ +
Sbjct: 238 GVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGE 291
>UNIPROTKB|P66842 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006184 EMBL:BX842581 GO:GO:0017111 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 PIR:A70748 RefSeq:NP_217437.1
RefSeq:NP_337502.1 RefSeq:YP_006516374.1 ProteinModelPortal:P66842
SMR:P66842 TCDB:3.A.5.2.2 PhosSite:P12071727 PRIDE:P66842
EnsemblBacteria:EBMYCT00000000121 EnsemblBacteria:EBMYCT00000072194
GeneID:13317714 GeneID:887205 GeneID:925285 KEGG:mtc:MT2989
KEGG:mtu:Rv2921c KEGG:mtv:RVBD_2921c PATRIC:18128342
TubercuList:Rv2921c OMA:FIGIGEN Uniprot:P66842
Length = 422
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 94/296 (31%), Positives = 150/296 (50%)
Query: 8 RLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL 67
RL S + L LI +D++ + ++E LL AD+G T ++++L+ + S +
Sbjct: 129 RLARSQNALGRGLLGLIGGGDLDEDSWQDVEDTLLVADLGPAATASVVSQLRSRLASGNV 188
Query: 68 FNTEQXXXXXXXXXXXXX--KSLEKPL--IFKKCKPFVIMIVGVNGVGKTTTIGKLANYF 123
TE +++ + + P V+++VGVNG GKTTT+GKLA
Sbjct: 189 -RTEADARAVLRDVLINELQPGMDRSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVL 247
Query: 124 KKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTD 183
+ V+L A DTFRAAA +QL V+ + DP D
Sbjct: 248 VADGRRVVLGAADTFRAAAADQLQTWAARVGAAVVRGPEGADPASVAFDAVDKGIAAGAD 307
Query: 184 IVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKI 243
+V++DT+GRL T+ LM EL E+ L++D GQN L+Q + F+++
Sbjct: 308 VVLIDTAGRLHTKVGLMDELDKVKRVVTRRASV--DEVLLVLDATIGQNGLAQARVFAEV 365
Query: 244 LRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
+ I+G ++TKLDGT KGGI+ + ++ +P+ +G+GE +DL F FV+ALL
Sbjct: 366 VDISGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDALL 421
>TIGR_CMR|BA_3983 [details] [associations]
symbol:BA_3983 "signal recognition particle protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 RefSeq:NP_846225.1 RefSeq:YP_020622.1
RefSeq:YP_029947.1 HSSP:O07347 ProteinModelPortal:Q81WJ2 SMR:Q81WJ2
EnsemblBacteria:EBBACT00000009811 EnsemblBacteria:EBBACT00000016655
EnsemblBacteria:EBBACT00000023730 GeneID:1087538 GeneID:2820002
GeneID:2848277 KEGG:ban:BA_3983 KEGG:bar:GBAA_3983 KEGG:bat:BAS3696
BioCyc:BANT260799:GJAJ-3754-MONOMER
BioCyc:BANT261594:GJ7F-3871-MONOMER Uniprot:Q81WJ2
Length = 449
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 93/297 (31%), Positives = 146/297 (49%)
Query: 8 RLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQ-FLLNELKKII---Y 63
RL++++ K K V++ K + E+ LL+ADV F+ + F+ ++ +
Sbjct: 9 RLQQTMQKIRGKGK---VSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAVGQDV 65
Query: 64 SKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF 123
K L +Q + + P VIM+VG+ G GKTTT GKLAN
Sbjct: 66 MKSLTPGQQVIKVVQEELTELMGGEQSKIAIANKPPTVIMMVGLQGAGKTTTTGKLANLL 125
Query: 124 -KKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNT 182
KK + +L A D +R AA +QL LGK D+PV S P ++ +
Sbjct: 126 RKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAKEDHH 185
Query: 183 DIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSK 242
D V++DT+G L LM EL P EIFL++D TGQ+ ++ + F +
Sbjct: 186 DYVLIDTAGHLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVAQSFHE 239
Query: 243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
L +TG+++TKLDG T+GG +I + P+ F G+GEK++ L+ F+ + +L
Sbjct: 240 QLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDALEAFHPERMASRIL 296
>TIGR_CMR|CHY_1434 [details] [associations]
symbol:CHY_1434 "signal recognition particle protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005048 "signal
sequence binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI RefSeq:YP_360266.1
ProteinModelPortal:Q3AC68 SMR:Q3AC68 STRING:Q3AC68 GeneID:3728502
KEGG:chy:CHY_1434 PATRIC:21275999
BioCyc:CHYD246194:GJCN-1433-MONOMER Uniprot:Q3AC68
Length = 446
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 90/265 (33%), Positives = 131/265 (49%)
Query: 30 DKNL-YNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNT----EQXXXXXXXXXXXX 84
D NL E+ LL+ADV F+ + + ++K+ ++ + +Q
Sbjct: 27 DVNLALREVRIALLEADVNFQVVKDFIAKVKEKAVGHEVLESLTPGQQVIKIVHEELINL 86
Query: 85 XKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE 144
L P +IM+VG+ G GKTTT KLA KK+ K LL A D +R AA +
Sbjct: 87 MGKTNAKLNDAGSPPTIIMLVGLQGAGKTTTAAKLAYLLKKQGKKPLLVAADVYRPAAIK 146
Query: 145 QLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELX 204
QL +LG DVPV + + P + + VI+DT+GRL LM EL
Sbjct: 147 QLQVLGDTIDVPVFTMGE-QSPVDIAKASINFAKSNLKNYVIIDTAGRLHINEELMDELK 205
Query: 205 XXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILA 264
P+EI L++D TGQ+ ++ K F+ L +TG+I+TKLDG TKGG
Sbjct: 206 KIKDVVH------PHEILLVVDAMTGQDAVNVAKSFNDELGLTGVILTKLDGDTKGGAAL 259
Query: 265 AIAKKYSIPLYFIGIGEKIEDLQIF 289
++ P+ F G+GEKIE+L+ F
Sbjct: 260 SVKAVTGCPIKFAGMGEKIENLEPF 284
>TIGR_CMR|ECH_0475 [details] [associations]
symbol:ECH_0475 "signal recognition particle protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005048 "signal sequence
binding" evidence=ISS] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_507291.1 ProteinModelPortal:Q2GGZ2 STRING:Q2GGZ2
GeneID:3927281 KEGG:ech:ECH_0475 PATRIC:20576422
BioCyc:ECHA205920:GJNR-477-MONOMER Uniprot:Q2GGZ2
Length = 448
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 101/305 (33%), Positives = 154/305 (50%)
Query: 11 ESLSKTACNL------KSLIVNKKIDKNLYNELESDLLKADVGFETTQ-FLLNELKKIIY 63
ESL+ + N+ K +I ++ D + E++ LL+ADV + F+ N +KI+
Sbjct: 3 ESLTSSLTNVIQKMQSKHVISSEDFDAAM-EEVKVALLEADVSLAVVKDFISNVKEKIVG 61
Query: 64 SKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKC-----KPF-VIMIVGVNGVGKTTTIG 117
T + L + L +KC KP VIM+VG+ GVGKTTT
Sbjct: 62 G----TTVKGVLPTQMIIKKIQDCLIEVLGSEKCELDISKPLSVIMMVGLQGVGKTTTTA 117
Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXX 177
KLA K +KK V++A+ D +R AA +QL ILGK DV + + P
Sbjct: 118 KLALKLKNKKKEVVMASLDVYRPAAQKQLEILGKQIDVQTLPIIENQAPIDIVKRAMDNA 177
Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQI 237
Q+ N D++I+DT+GRL +M EL P E+ L++D GQ+ ++
Sbjct: 178 QQANCDVLILDTAGRLHVDQVMMEELRAIKDLTS------PSEVILVVDSMIGQDAINVA 231
Query: 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI--PLYFIGIGEKIEDLQIFNAVDFV 295
K F+ + ITG+I+T++DG ++GG AA++ K S+ P+ FI GEK+ DL F
Sbjct: 232 KSFNDNIGITGIILTRIDGDSRGG--AALSMKMSVGSPIKFIANGEKLSDLDDFYPERIA 289
Query: 296 NALLN 300
+LN
Sbjct: 290 KRILN 294
>TAIR|locus:2037803 [details] [associations]
symbol:ATHSRP54A "signal recognition particle 54 kDa
subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;ISS] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0051607
"defense response to virus" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0003924 GO:GO:0006184 EMBL:AC007591 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 EMBL:L19997
EMBL:AF344329 EMBL:AY086187 IPI:IPI00526094 PIR:S42550
RefSeq:NP_563970.1 UniGene:At.24597 ProteinModelPortal:P37106
SMR:P37106 DIP:DIP-59002N STRING:P37106 PaxDb:P37106 PRIDE:P37106
EnsemblPlants:AT1G15310.1 GeneID:838100 KEGG:ath:AT1G15310
TAIR:At1g15310 eggNOG:COG0541 HOGENOM:HOG000036165
InParanoid:P37106 KO:K03106 OMA:KVIPPQM PhylomeDB:P37106
ProtClustDB:CLSN2686827 Genevestigator:P37106 GermOnline:AT1G15310
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
Uniprot:P37106
Length = 479
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 89/287 (31%), Positives = 139/287 (48%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKII--------YSKKLFNTEQXXX 75
I+++K+ + NE+ LL++DV F + + +KKI+ ++K+L EQ
Sbjct: 22 IIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLI-IEQAIF 80
Query: 76 XXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135
K P KK KP V+M VG+ G GKTTT K A Y +K+ L
Sbjct: 81 KELCRMLDPGKPAFAP---KKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCA 137
Query: 136 DTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLST 195
DTFRA A++QL +P +DP +K+ D++IVDTSGR
Sbjct: 138 DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQ 197
Query: 196 QSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLD 255
+ L E+ P + ++D + GQ Q + F + + + +IITK+D
Sbjct: 198 AASLFEEMRQVAEATE------PDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMD 251
Query: 256 GTTKGG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301
G KGG L+A+A S P+ FIG GE +++ ++F+ FV+ LL +
Sbjct: 252 GHAKGGGALSAVAATKS-PVIFIGTGEHMDEFEVFDVKPFVSRLLGK 297
>TAIR|locus:2150620 [details] [associations]
symbol:CPSRP54 "chloroplast signal recognition particle
54 kDa subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005048 "signal sequence binding" evidence=IDA]
[GO:0005525 "GTP binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006617 "SRP-dependent cotranslational protein targeting to
membrane, signal sequence recognition" evidence=ISS] [GO:0008312
"7S RNA binding" evidence=IEA;ISS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0045038 "protein import into chloroplast
thylakoid membrane" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080085 "signal recognition particle, chloroplast targeting"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0003924
GO:GO:0006184 EMBL:AL162873 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 PDB:2HUG PDB:3UI2 PDBsum:2HUG
PDBsum:3UI2 TCDB:3.A.5.1.2 GO:GO:0080085 eggNOG:COG0541 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 EMBL:Z21970 EMBL:AF092168
EMBL:AY050999 EMBL:BT000976 IPI:IPI00538977 PIR:S36637
RefSeq:NP_196014.1 UniGene:At.435 ProteinModelPortal:P37107
SMR:P37107 DIP:DIP-752N IntAct:P37107 MINT:MINT-126488
STRING:P37107 PaxDb:P37107 PRIDE:P37107 ProMEX:P37107
EnsemblPlants:AT5G03940.1 GeneID:830273 KEGG:ath:AT5G03940
GeneFarm:1888 TAIR:At5g03940 HOGENOM:HOG000036164 InParanoid:P37107
OMA:DSGKTEQ PhylomeDB:P37107 ProtClustDB:CLSN2686225
EvolutionaryTrace:P37107 Genevestigator:P37107 GermOnline:AT5G03940
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 Uniprot:P37107
Length = 564
Score = 339 (124.4 bits), Expect = 2.7e-30, P = 2.7e-30
Identities = 77/198 (38%), Positives = 110/198 (55%)
Query: 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGK 151
L F K P VI++ G+ GVGKTT KLA Y KK+ KS +L A D +R AA +QL+ILG+
Sbjct: 169 LQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGE 228
Query: 152 YNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXX 211
VPV + P +K N D+VI+DT+GRL +M EL
Sbjct: 229 QVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKK--- 285
Query: 212 XXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYS 271
F P E+ L++D TGQ + + F+ + ITG I+TKLDG ++GG ++ +
Sbjct: 286 ---FLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSG 342
Query: 272 IPLYFIGIGEKIEDLQIF 289
P+ +G GE++EDL+ F
Sbjct: 343 KPIKLVGRGERMEDLEPF 360
>TAIR|locus:2028563 [details] [associations]
symbol:AT1G48900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003924 GO:GO:0006184 EMBL:AC084414 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 ProtClustDB:CLSN2686827
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 EMBL:U12127
EMBL:AY054273 EMBL:AY052331 EMBL:AF446864 IPI:IPI00531486
PIR:G96526 RefSeq:NP_564535.1 UniGene:At.23838
ProteinModelPortal:P49967 SMR:P49967 STRING:P49967 PaxDb:P49967
PRIDE:P49967 EnsemblPlants:AT1G48900.1 GeneID:841312
KEGG:ath:AT1G48900 GeneFarm:1889 TAIR:At1g48900 InParanoid:P49967
OMA:NVQHMSK PhylomeDB:P49967 Genevestigator:P49967
GermOnline:AT1G48900 Uniprot:P49967
Length = 495
Score = 335 (123.0 bits), Expect = 2.8e-30, P = 2.8e-30
Identities = 88/281 (31%), Positives = 137/281 (48%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLF-NTEQXXXXXXXXXX 82
I+++K NE+ LL++DV F + + + +KKI+ + L +
Sbjct: 22 IIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFS 81
Query: 83 XXXKSLE--KPLIF-KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139
K L+ KP KK K V+M VG+ G GKTTT K A Y +K+ L DTFR
Sbjct: 82 ELCKMLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFR 141
Query: 140 AAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHL 199
A A++QL +P +DP +K+N D++IVDTSGR ++ L
Sbjct: 142 AGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASL 201
Query: 200 MRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK 259
E+ P + ++D + GQ Q + F + + + +IITK+DG K
Sbjct: 202 FEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAK 255
Query: 260 GG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
GG L+A+A S P+ FIG GE +++ ++F+ FV+ LL
Sbjct: 256 GGGALSAVAATKS-PVIFIGTGEHMDEFEVFDVKPFVSRLL 295
>POMBASE|SPCC188.06c [details] [associations]
symbol:srp54 "signal recognition particle subunit Srp54"
species:4896 "Schizosaccharomyces pombe" [GO:0003924 "GTPase
activity" evidence=IMP] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IMP] [GO:0008312 "7S RNA binding" evidence=IMP]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPCC188.06c
GO:GO:0005525 GO:GO:0005783 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003924 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
OMA:GQQVVKI EMBL:X51613 EMBL:M55518 PIR:A33644 RefSeq:NP_588209.1
ProteinModelPortal:P21565 MINT:MINT-4687605 STRING:P21565
PRIDE:P21565 EnsemblFungi:SPCC188.06c.1 GeneID:2539290
KEGG:spo:SPCC188.06c OrthoDB:EOG4TMV9N NextBio:20800457
Uniprot:P21565
Length = 522
Score = 325 (119.5 bits), Expect = 6.5e-29, P = 6.5e-29
Identities = 96/284 (33%), Positives = 134/284 (47%)
Query: 21 KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXX 80
K+ VN+++ L + + LL+ DV Q L + +KK I L
Sbjct: 19 KATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKA 78
Query: 81 XXXXXKSLEKPLI--F--KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
SL P + F KK +P VIM+VG+ G GKTTT KLA ++++R L A D
Sbjct: 79 VFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAAD 138
Query: 137 TFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQ 196
TFRA A++QL VP TDP + D++IVDTSGR +
Sbjct: 139 TFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQE 198
Query: 197 SHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDG 256
L E+ P + +I+D + GQ SQ K F + +IITKLDG
Sbjct: 199 QELFAEMVEISDAIR------PDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDG 252
Query: 257 TTKGG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
KGG L+A+A + P+ FIG GE I DL+ F+ F++ LL
Sbjct: 253 HAKGGGALSAVAATKT-PIVFIGTGEHINDLERFSPRSFISKLL 295
>TIGR_CMR|VC_0560 [details] [associations]
symbol:VC_0560 "signal recognition particle protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 PIR:H82306 RefSeq:NP_230211.1
HSSP:P07019 ProteinModelPortal:Q9KUG1 SMR:Q9KUG1 DNASU:2615237
GeneID:2615237 KEGG:vch:VC0560 PATRIC:20080238 Uniprot:Q9KUG1
Length = 461
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 90/291 (30%), Positives = 138/291 (47%)
Query: 9 LKESLSKTACNL--KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKK----II 62
L + LSKT N+ K + I K+ E+ LL+ADV + +N +K+ +
Sbjct: 5 LTDRLSKTLKNISGKGRLTEDNI-KDTLREVRMALLEADVALPVVRDFVNRVKEGAVGVE 63
Query: 63 YSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
SK L ++ + L P VI++ G+ G GKTT++GKL+
Sbjct: 64 VSKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKLSKL 123
Query: 123 FKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITD--PXXXXXXXXXXXQK 179
K+R KK VL+ + D +R AA +QL L ND+ V D P +K
Sbjct: 124 LKERDKKKVLVVSADVYRPAAIKQLETLA--NDLGVDFFPSTPDQKPIDIANAAIDHAKK 181
Query: 180 KNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKE 239
K D++IVDT+GRL+ +M E+ P E ++D TGQ+ K
Sbjct: 182 KFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAADTAKA 235
Query: 240 FSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
F L +TG+I+TK+DG +GG ++ P+ FIG+GEK + L+ F+
Sbjct: 236 FGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFH 286
>UNIPROTKB|Q97QD2 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
PIR:F95149 RefSeq:NP_345751.1 ProteinModelPortal:Q97QD2
EnsemblBacteria:EBSTRT00000025249 GeneID:931801 KEGG:spn:SP_1287
PATRIC:19706973 Uniprot:Q97QD2
Length = 523
Score = 322 (118.4 bits), Expect = 1.4e-28, P = 1.4e-28
Identities = 91/290 (31%), Positives = 139/290 (47%)
Query: 11 ESLSKTACNL-KSLIVNKKIDKNLYNELESD----LLKADVGFETTQFLLNELKKIIYSK 65
ESL++ N+ K+L KI ++ E + LL+ADV + + ++++
Sbjct: 4 ESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAVGH 63
Query: 66 KLFNT---EQXXXXXXXXXXXXXKSLEKPLIFKKCK-PFVIMIVGVNGVGKTTTIGKLAN 121
++ +T Q + I K K P +IM+VG+ G GKTT GKLAN
Sbjct: 64 EVIDTLNPAQQIIKIVDEELTAVLGSDTAEIIKSPKIPTIIMMVGLQGAGKTTFAGKLAN 123
Query: 122 YFKKRKKS-VLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKK 180
KK + + L+ A D +R AA +QL LG+ DVPV + Q
Sbjct: 124 KLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQAQTN 183
Query: 181 NTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEF 240
+ D V++DT+GRL LM EL P EI L++D GQ + +EF
Sbjct: 184 HNDYVLIDTAGRLQIDELLMNELRDVKALAQ------PNEILLVVDAMIGQEAANVAREF 237
Query: 241 SKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
+ L +TG+I+TK+DG T+GG ++ P+ F G GEKI D++ F+
Sbjct: 238 NAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFH 287
>TIGR_CMR|GSU_0642 [details] [associations]
symbol:GSU_0642 "signal recognition particle protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867
RefSeq:NP_951699.1 ProteinModelPortal:Q74FG7 GeneID:2685362
KEGG:gsu:GSU0642 PATRIC:22024031 BioCyc:GSUL243231:GH27-644-MONOMER
Uniprot:Q74FG7
Length = 452
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 84/281 (29%), Positives = 132/281 (46%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNT----EQXXXXXXX 79
+++++ K E+ LL+ADV F+ + + ++ ++ + +Q
Sbjct: 21 VMSEENIKEALREVRLVLLEADVNFKVVKDFVERVRVRAVGTQVLQSLTPGQQVIKIVQE 80
Query: 80 XXXXXXKSLEKPLIFKKCKPFV-IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138
E + KP V IM+VG+ G GKTT+ GKLA K +++ LL D +
Sbjct: 81 ELVALMGGGEDNSLDLAAKPPVPIMMVGLQGAGKTTSCGKLARLLKGQRRRPLLVPADVY 140
Query: 139 RAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSH 198
R AA EQL LG+ V V + DP D+VI+DT+GR +
Sbjct: 141 RPAAIEQLKTLGRQLSVEVFDSRADQDPVDICREALRYATLNGFDVVILDTAGRHQIDEY 200
Query: 199 LMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTT 258
LM EL P EI + D TGQ ++ F+ L ITG+++TKLDG
Sbjct: 201 LMNELVRIKEAAE------PREILFVADAMTGQEAVNVASGFNDRLDITGVVLTKLDGDA 254
Query: 259 KGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
KGG +I P+ +G+GEK++ L++F+A V+ +L
Sbjct: 255 KGGAALSIRAVTGKPVKLVGVGEKLDALEVFHADRLVSRIL 295
>TIGR_CMR|CBU_0450 [details] [associations]
symbol:CBU_0450 "signal recognition particle protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
RefSeq:NP_819486.1 ProteinModelPortal:Q83E79 PRIDE:Q83E79
GeneID:1208334 KEGG:cbu:CBU_0450 PATRIC:17929591
BioCyc:CBUR227377:GJ7S-448-MONOMER Uniprot:Q83E79
Length = 461
Score = 310 (114.2 bits), Expect = 1.2e-27, P = 1.2e-27
Identities = 89/297 (29%), Positives = 149/297 (50%)
Query: 4 NWITRLKESLSKTACNLKSL--IVNKKIDKNLYNELESDLLKADVGFETTQ-FLLNELKK 60
N RL S++K L+ L + + I L+ ++ S L++ADV + F+ + +K
Sbjct: 4 NLTNRLTTSINK----LRGLGRLTEENIQSTLH-DIRSALIEADVALPVVKDFIEHVREK 58
Query: 61 IIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLI---FKKCKPFVIMIVGVNGVGKTTTIG 117
+ + + N L L+ P VI++ G+ G GKTTT+
Sbjct: 59 ALGQEVIGNVRPGEALVKVVQDELTHLLGDELVEINLNAQPPIVIVMAGLQGSGKTTTVA 118
Query: 118 KLANYFKK-RKKSVLLAACDTFRAAAYEQLLILG-KYNDV--PVISEKKITDPXXXXXXX 173
KLA + + +KKSV++A+ D +R AA +QL L + N + P +++K P
Sbjct: 119 KLARWLLEIQKKSVMVASADVYRPAAIQQLETLASQINAIFFPTQADQK---PVEIAKAA 175
Query: 174 XXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNT 233
+K+ D++I+DT+GRL + LM E+ P EI L++D GQ+
Sbjct: 176 LKQAEKQFMDVLILDTAGRLHIDNVLMEEMKAISDAVT------PTEILLVVDSMMGQDA 229
Query: 234 LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
+ K F+ L +TG+I+TKLDG T+GG ++ P+ F+G+GEKI+ L+ F+
Sbjct: 230 ANVAKSFNDTLPLTGVILTKLDGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFH 286
>FB|FBgn0010747 [details] [associations]
symbol:Srp54k "Signal recognition particle protein 54k"
species:7227 "Drosophila melanogaster" [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0005048 "signal sequence binding" evidence=ISS] [GO:0005525
"GTP binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0005048
GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 HSSP:P70722 EMBL:AY094660
ProteinModelPortal:Q8T3P8 SMR:Q8T3P8 STRING:Q8T3P8 PaxDb:Q8T3P8
PRIDE:Q8T3P8 FlyBase:FBgn0010747 InParanoid:Q8T3P8
OrthoDB:EOG44TMQ3 ChiTaRS:Srp54k ArrayExpress:Q8T3P8 Bgee:Q8T3P8
Uniprot:Q8T3P8
Length = 569
Score = 313 (115.2 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 91/285 (31%), Positives = 138/285 (48%)
Query: 21 KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKII-YSKKLFNTEQXXXXXXX 79
K+ ++N++ ++ E+ + LL+ADV + L ++ +I + + +
Sbjct: 19 KATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRMIQSA 78
Query: 80 XXXXXXKSLE---KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK-KSVLLAAC 135
K ++ KP K K V+M VG+ G GKTTT KLA +++KR KS L+ A
Sbjct: 79 VFKELVKLVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCA- 137
Query: 136 DTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLST 195
DTFRA AY+Q+ +P DP +++ +++IVDTSGR
Sbjct: 138 DTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQ 197
Query: 196 QSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLD 255
+ L E+ P I ++D GQ +Q K F + I +IITKLD
Sbjct: 198 EESLFEEMLAVSNAVS------PDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLD 251
Query: 256 GTTKGG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
G KGG L+A+A S P+ FIG GE I+DL+ F FV+ LL
Sbjct: 252 GHAKGGGALSAVAATQS-PIIFIGTGEHIDDLEPFKTKPFVSKLL 295
>TIGR_CMR|CPS_4073 [details] [associations]
symbol:CPS_4073 "signal recognition particle protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=ISS] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_270728.1
ProteinModelPortal:Q47WU4 SMR:Q47WU4 STRING:Q47WU4 GeneID:3519232
KEGG:cps:CPS_4073 PATRIC:21471017
BioCyc:CPSY167879:GI48-4086-MONOMER Uniprot:Q47WU4
Length = 463
Score = 307 (113.1 bits), Expect = 3.0e-27, P = 3.0e-27
Identities = 86/289 (29%), Positives = 134/289 (46%)
Query: 9 LKESLSKTACNL--KSLIVNKKIDKNLYNELESDLLKADVGFETT-QFLLNELKKII--- 62
L E LSKT N+ + + I + L E+ LL+ADV +F+ +K +
Sbjct: 5 LSERLSKTLKNISGRGRLTEDNIKETL-REVRMALLEADVALPVIREFIAKVKEKAVGTD 63
Query: 63 YSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
SK L + + + L + P V+++ G+ G GKTT++ KLA +
Sbjct: 64 VSKSLTPGQIFVKIVQKELESAMGEVNEGLDLRAAPPAVVLMAGLQGAGKTTSVAKLAKF 123
Query: 123 FKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
+R KK VL+ + D +R AA +QL L + V P +K
Sbjct: 124 LTEREKKKVLVVSADVYRPAAIKQLETLAEEISVGFFPSDIKQKPIDIANAAIDHAKKNF 183
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
D++IVDT+GRL ++M E+ P E +D TGQ+ + K F+
Sbjct: 184 YDVLIVDTAGRLHIDENMMAEIQQLHAAIN------PIETLFTVDAMTGQDAANTAKAFN 237
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
L +TG+I+TK DG +GG +I P+ F+G+GEKIE L+ F+
Sbjct: 238 DALPLTGIILTKTDGDARGGAALSIRHITGKPIKFMGVGEKIEALEPFH 286
>CGD|CAL0003314 [details] [associations]
symbol:SRP54 species:5476 "Candida albicans" [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005048
"signal sequence binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
CGD:CAL0003314 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AACQ01000049 EMBL:AACQ01000048 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0048500 RefSeq:XP_717868.1
RefSeq:XP_717934.1 ProteinModelPortal:Q5A885 STRING:Q5A885
GeneID:3640377 GeneID:3640507 KEGG:cal:CaO19.10753
KEGG:cal:CaO19.3243 Uniprot:Q5A885
Length = 556
Score = 310 (114.2 bits), Expect = 4.2e-27, P = 4.2e-27
Identities = 89/294 (30%), Positives = 141/294 (47%)
Query: 11 ESLSKTACN-LKSLIVNKKIDKNLYNELESDLLKADVGFETTQF-LLNELKKIIYSKKLF 68
+ + K C+ L VN K+ L +++ + +++V ET+ +L+KII+ +
Sbjct: 26 QQMIKDICSALLESDVNVKLVAKLRGNIKNKIDESNVSKETSAMNKRKKLQKIIFDELCA 85
Query: 69 NTEQXXXXXX-XXXXXXXKSLE-KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR 126
+ K++ K + K VIM VG+ G GKTT+ KLA Y+KKR
Sbjct: 86 LVDSNVEPPKPKKLSTSTKTINGKKVRLSKESSHVIMFVGLQGAGKTTSCTKLAVYYKKR 145
Query: 127 KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVI 186
V L DTFRA A++QL ++P DP +++ DI+I
Sbjct: 146 GFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVKIAFEGVQKFKQEKFDIII 205
Query: 187 VDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRI 246
VDTSGR + L E+ P + +++DG+ GQ SQ + F +
Sbjct: 206 VDTSGRHRQEEQLFTEMVQIGEAVQ------PTQTIMVMDGSIGQAAESQARAFKESSNF 259
Query: 247 TGLIITKLDGTTKGG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
+I+TK+DG KGG ++A+A + P+ FIG GE + DL+IF F++ LL
Sbjct: 260 GSIILTKMDGHAKGGGAISAVAATKT-PIVFIGTGEHVGDLEIFKPTTFISKLL 312
>UNIPROTKB|O07347 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2J7P
PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW PDBsum:2J7P
PDBsum:2XKV PDB:1RY1 PDBsum:1RY1 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
EMBL:U82109 PDB:1FFH PDB:1JPJ PDB:1JPN PDB:1LS1 PDB:1NG1 PDB:1O87
PDB:2C03 PDB:2C04 PDB:2FFH PDB:2IY3 PDB:2J45 PDB:2J46 PDB:2NG1
PDB:3NG1 PDBsum:1FFH PDBsum:1JPJ PDBsum:1JPN PDBsum:1LS1
PDBsum:1NG1 PDBsum:1O87 PDBsum:2C03 PDBsum:2C04 PDBsum:2FFH
PDBsum:2IY3 PDBsum:2J45 PDBsum:2J46 PDBsum:2NG1 PDBsum:3NG1
ProteinModelPortal:O07347 SMR:O07347 IntAct:O07347
EvolutionaryTrace:O07347 Uniprot:O07347
Length = 430
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 88/287 (30%), Positives = 138/287 (48%)
Query: 8 RLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL 67
RL+E++ + + I + + L E+ L+ ADV E + + +++ K++
Sbjct: 8 RLQEAIGRLRG--RGRITEEDLKATL-REIRRALMDADVNLEVARDFVERVREEALGKQV 64
Query: 68 FNTEQXXXXXXXXXXXXXKSL---EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK 124
+ K E L K + + +VG+ G GKTTT KLA Y+K
Sbjct: 65 LESLTPAEVILATVYEALKEALGGEARLPVLKDRN-LWFLVGLQGSGKTTTAAKLALYYK 123
Query: 125 KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDI 184
+ + LL A DT R AA EQL +LG+ VPV+ P + + D+
Sbjct: 124 GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDL 183
Query: 185 VIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKIL 244
++VDT+GRL LM EL P E+ L++D TGQ LS + F + +
Sbjct: 184 ILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARAFDEKV 237
Query: 245 RITGLIITKLDGTTKGGILAAIAKKYSI--PLYFIGIGEKIEDLQIF 289
+TGL++TKLDG +GG AA++ ++ P+YF G+ EK E L+ F
Sbjct: 238 GVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSEKPEGLEPF 282
>TIGR_CMR|SO_1356 [details] [associations]
symbol:SO_1356 "signal recognition particle protein Ffh"
species:211586 "Shewanella oneidensis MR-1" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR001251
PROSITE:PS50191 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347 RefSeq:NP_716976.1
ProteinModelPortal:Q8EH73 GeneID:1169177 KEGG:son:SO_1356
PATRIC:23522366 Uniprot:Q8EH73
Length = 457
Score = 304 (112.1 bits), Expect = 5.9e-27, P = 5.9e-27
Identities = 82/289 (28%), Positives = 136/289 (47%)
Query: 9 LKESLSKTACNL--KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKK 66
L + LS+T N+ + + + + + L E+ LL+ADV + +N +K+ ++
Sbjct: 5 LTDRLSRTLKNISGRGRLTEENVKETL-REVRMALLEADVALPVVREFVNNVKERAVGQE 63
Query: 67 LFNT-EQXXXXXXXXXXXXXKSL---EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
+ + KS+ + L P V+M+ G+ G GKTT++ KL
Sbjct: 64 VAKSLSPGQAFIKIVQSELEKSMGEANQALDLATQPPAVVMMAGLQGAGKTTSVAKLGKL 123
Query: 123 FKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
+ R KKSVL+ + D +R AA +QL L DV P + K
Sbjct: 124 LRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAKLKF 183
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
D+VI+DT+GRL +M E+ P E ++D TGQ+ + K F+
Sbjct: 184 IDVVILDTAGRLHVDEAMMDEIKALHAALK------PIETLFVVDAMTGQDAANTAKAFN 237
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
+ L +TG+I+TK+DG +GG +I P+ F+G+GEK + L+ F+
Sbjct: 238 EALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFH 286
>ZFIN|ZDB-GENE-040426-818 [details] [associations]
symbol:srp54 "signal recognition particle 54"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 ZFIN:ZDB-GENE-040426-818 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 GO:GO:0048500 HSSP:P70722 EMBL:BX088587
EMBL:BC045474 EMBL:BC067588 IPI:IPI00483938 RefSeq:NP_957282.1
UniGene:Dr.7990 SMR:Q7ZVN5 STRING:Q7ZVN5 Ensembl:ENSDART00000018678
Ensembl:ENSDART00000133424 GeneID:393963 KEGG:dre:393963
InParanoid:Q7ZVN5 NextBio:20814934 Uniprot:Q7ZVN5
Length = 504
Score = 303 (111.7 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 87/281 (30%), Positives = 131/281 (46%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
I+N+++ + E+ + LL+ADV + + L +K I +++ +
Sbjct: 22 IINEEVLNAMLKEVCAALLEADVNIKLVKQLRENVKAAIDLEEMASGLNKRRMIQHAVFK 81
Query: 84 XXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139
L P + K K VIM VG+ G GKTTT KLA YF+++ L DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKNNVIMFVGLQGSGKTTTCSKLAYYFQRKGWKTCLICADTFR 141
Query: 140 AAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHL 199
A A++QL +P DP + +N +I+IVDTSGR + L
Sbjct: 142 AGAFDQLKQNATKARIPFYGSYTEMDPVIIAAEGVEKFKSENFEIIIVDTSGRHKQEDSL 201
Query: 200 MRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK 259
E+ P I ++D + GQ +Q K F + + +I+TKLDG K
Sbjct: 202 FEEMLQVSNAVQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255
Query: 260 GG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
GG L+A+A S P+ FIG GE I+D + F F++ LL
Sbjct: 256 GGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLL 295
>TAIR|locus:2157809 [details] [associations]
symbol:AT5G49500 "AT5G49500" species:3702 "Arabidopsis
thaliana" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005525 "GTP
binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=IEA;ISS] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003924 GO:GO:0006184 EMBL:AB023033
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106
ProtClustDB:CLSN2686827 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 EMBL:U12126 IPI:IPI00534798 RefSeq:NP_199761.1
UniGene:At.29781 ProteinModelPortal:P49966 SMR:P49966 IntAct:P49966
STRING:P49966 PRIDE:P49966 GeneID:835010 KEGG:ath:AT5G49500
TAIR:At5g49500 InParanoid:P49966 Genevestigator:P49966
GermOnline:AT5G49500 Uniprot:P49966
Length = 497
Score = 302 (111.4 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 85/286 (29%), Positives = 136/286 (47%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL---FNT----EQXXXX 76
I+++K + NE+ LL++DV F + + +KKI+ + L N EQ
Sbjct: 22 IIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIFS 81
Query: 77 XXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNG--VGKTTTIGKLANYFKKRKKSVLLAA 134
KS P KK KP V+M VG+ G + K + + +++ L
Sbjct: 82 ELCKMLDPGKSAFAP---KKAKPSVVMFVGLQGEVLEKPQLVPSMLIIIRRKGYKPALVC 138
Query: 135 CDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLS 194
DTFRA A++QL + +P +DP +K+N D++IVDTSGR
Sbjct: 139 ADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHK 198
Query: 195 TQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKL 254
Q+ L E+ P + ++D + GQ Q + F + + + +IITK+
Sbjct: 199 QQASLFEEMRQISEATK------PDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKM 252
Query: 255 DGTTKGG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
DG KGG L+A+A S P+ FIG GE +++ ++F+A FV+ LL
Sbjct: 253 DGHAKGGGTLSAVAATKS-PVIFIGTGEHMDEFEVFDAKPFVSRLL 297
>TIGR_CMR|NSE_0540 [details] [associations]
symbol:NSE_0540 "signal recognition particle protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0048501 "signal recognition
particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_506423.1
ProteinModelPortal:Q2GDM3 STRING:Q2GDM3 GeneID:3931977
KEGG:nse:NSE_0540 PATRIC:22681129
BioCyc:NSEN222891:GHFU-559-MONOMER Uniprot:Q2GDM3
Length = 449
Score = 299 (110.3 bits), Expect = 2.0e-26, P = 2.0e-26
Identities = 82/278 (29%), Positives = 136/278 (48%)
Query: 21 KSLIVNKKIDKNLYNELESDLLKADVGFETT-QFLLNELKKIIYSKKLFNTEQXXXXXXX 79
+ +I K+ D + +L L+ADV T QF+ N + +I ++
Sbjct: 19 RGVITEKEFD-DFVRKLRLTFLEADVSLPVTKQFIANVRESVIGKSRVKGISTPAVIGSV 77
Query: 80 XXXXXXKSL---EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAAC 135
K L + F K ++M VG+ GVGKTTT KLA +K+ KK++LL++
Sbjct: 78 VKEELVKILGGESQKFEFPKFGKQILMFVGLQGVGKTTTAAKLALLIRKKFKKNILLSSV 137
Query: 136 DTFRAAAYEQLLILGKYNDV---PVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGR 192
D +R AA +QL IL K DV P++ + + D + D+++VDT+GR
Sbjct: 138 DIYRPAARKQLEILAKQIDVDTVPIVEGEDV-DAIVKKTLDLFNNSHEGYDVLMVDTAGR 196
Query: 193 LSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIIT 252
S LM EL P EIF ++D GQ++L+ + F + TG+I++
Sbjct: 197 SQIDSVLMEELKVIKNRLQ------PSEIFQVLDAMMGQDSLNVARTFHSEIGTTGVIVS 250
Query: 253 KLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
+LD + G + ++ + +P+ F G GE++ DL+ F+
Sbjct: 251 RLDSDARVGSVLSVRQSVGLPIRFCGAGERVNDLEEFH 288
>UNIPROTKB|Q2T9U1 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9913 "Bos taurus" [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005525 "GTP
binding" evidence=ISS] [GO:0008144 "drug binding" evidence=ISS]
[GO:0008312 "7S RNA binding" evidence=ISS] [GO:0019003 "GDP
binding" evidence=ISS] [GO:0030942 "endoplasmic reticulum signal
peptide binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 EMBL:BC111270
IPI:IPI00698247 RefSeq:NP_001033290.1 UniGene:Bt.36654 HSSP:Q6MTB9
ProteinModelPortal:Q2T9U1 SMR:Q2T9U1 STRING:Q2T9U1 PRIDE:Q2T9U1
Ensembl:ENSBTAT00000025405 GeneID:614017 KEGG:bta:614017 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 InParanoid:Q2T9U1
OMA:GQQVVKI OrthoDB:EOG45MN54 NextBio:20898897 Uniprot:Q2T9U1
Length = 504
Score = 302 (111.4 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 86/281 (30%), Positives = 131/281 (46%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
I+N+++ + E+ + LL+ADV + + L +K I +++ +
Sbjct: 22 IINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81
Query: 84 XXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139
L P + K K VIM VG+ G GKTTT KLA Y++++ L DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 140 AAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHL 199
A A++QL +P DP + +N +I+IVDTSGR + L
Sbjct: 142 AGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSL 201
Query: 200 MRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK 259
E+ P I ++D + GQ +Q K F + + +I+TKLDG K
Sbjct: 202 FEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255
Query: 260 GG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
GG L+A+A S P+ FIG GE I+D + F F++ LL
Sbjct: 256 GGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLL 295
>UNIPROTKB|P61010 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9615 "Canis lupus familiaris" [GO:0005829 "cytosol"
evidence=TAS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=ISS;IMP] [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER"
evidence=ISS;IMP] [GO:0003924 "GTPase activity" evidence=ISS]
[GO:0005525 "GTP binding" evidence=ISS] [GO:0008144 "drug binding"
evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006616 "SRP-dependent
cotranslational protein targeting to membrane, translocation"
evidence=IDA] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=IMP]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005829 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0006616 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 Reactome:REACT_146484
GO:GO:0030942 PDB:2J37 PDBsum:2J37 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 EMBL:X16318 PIR:S05197 RefSeq:NP_001003272.1
UniGene:Cfa.3810 PDB:2GO5 PDBsum:2GO5 ProteinModelPortal:P61010
SMR:P61010 STRING:P61010 PRIDE:P61010 Ensembl:ENSCAFT00000021158
GeneID:403953 KEGG:cfa:403953 InParanoid:P61010
EvolutionaryTrace:P61010 NextBio:20817443 Uniprot:P61010
Length = 504
Score = 302 (111.4 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 86/281 (30%), Positives = 131/281 (46%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
I+N+++ + E+ + LL+ADV + + L +K I +++ +
Sbjct: 22 IINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81
Query: 84 XXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139
L P + K K VIM VG+ G GKTTT KLA Y++++ L DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 140 AAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHL 199
A A++QL +P DP + +N +I+IVDTSGR + L
Sbjct: 142 AGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSL 201
Query: 200 MRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK 259
E+ P I ++D + GQ +Q K F + + +I+TKLDG K
Sbjct: 202 FEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255
Query: 260 GG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
GG L+A+A S P+ FIG GE I+D + F F++ LL
Sbjct: 256 GGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLL 295
>UNIPROTKB|P61011 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0008144 "drug
binding" evidence=IDA] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IDA] [GO:0008312 "7S RNA binding" evidence=IDA]
[GO:0006616 "SRP-dependent cotranslational protein targeting to
membrane, translocation" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0019003 "GDP binding" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IDA]
[GO:0042493 "response to drug" evidence=IDA] [GO:0045047 "protein
targeting to ER" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC;TAS] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] [GO:0006184 "GTP catabolic process" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005829 GO:GO:0005730
GO:GO:0042493 GO:GO:0006412 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0043021 GO:GO:0019003
TCDB:3.A.5.9.1 GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0006616
GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0030942 PDB:1MFQ PDBsum:1MFQ CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI OrthoDB:EOG45MN54 EMBL:X86373 EMBL:U51920 EMBL:AK300824
EMBL:AK312853 EMBL:AL049776 EMBL:BC000652 EMBL:BC003389
IPI:IPI00009822 IPI:IPI00929464 PIR:S54143 RefSeq:NP_001139754.1
RefSeq:NP_003127.1 UniGene:Hs.167535 PDB:1QB2 PDBsum:1QB2
ProteinModelPortal:P61011 SMR:P61011 IntAct:P61011 STRING:P61011
PhosphoSite:P61011 DMDM:46577650 PaxDb:P61011 PRIDE:P61011
DNASU:6729 Ensembl:ENST00000216774 Ensembl:ENST00000546080
Ensembl:ENST00000556994 GeneID:6729 KEGG:hsa:6729 UCSC:uc001wso.3
GeneCards:GC14P035452 HGNC:HGNC:11301 HPA:HPA048977 MIM:604857
neXtProt:NX_P61011 PharmGKB:PA36125 InParanoid:P61011
PhylomeDB:P61011 ChiTaRS:SRP54 EvolutionaryTrace:P61011
GenomeRNAi:6729 NextBio:26248 ArrayExpress:P61011 Bgee:P61011
CleanEx:HS_SRP54 Genevestigator:P61011 GermOnline:ENSG00000100883
Uniprot:P61011
Length = 504
Score = 302 (111.4 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 86/281 (30%), Positives = 131/281 (46%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
I+N+++ + E+ + LL+ADV + + L +K I +++ +
Sbjct: 22 IINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81
Query: 84 XXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139
L P + K K VIM VG+ G GKTTT KLA Y++++ L DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 140 AAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHL 199
A A++QL +P DP + +N +I+IVDTSGR + L
Sbjct: 142 AGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSL 201
Query: 200 MRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK 259
E+ P I ++D + GQ +Q K F + + +I+TKLDG K
Sbjct: 202 FEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255
Query: 260 GG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
GG L+A+A S P+ FIG GE I+D + F F++ LL
Sbjct: 256 GGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLL 295
>UNIPROTKB|F2Z5M9 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0008144
"drug binding" evidence=IEA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:CU469145
RefSeq:XP_001927834.3 ProteinModelPortal:F2Z5M9 SMR:F2Z5M9
PRIDE:F2Z5M9 Ensembl:ENSSSCT00000002187 GeneID:100154361
KEGG:ssc:100154361 Uniprot:F2Z5M9
Length = 504
Score = 302 (111.4 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 86/281 (30%), Positives = 131/281 (46%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
I+N+++ + E+ + LL+ADV + + L +K I +++ +
Sbjct: 22 IINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81
Query: 84 XXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139
L P + K K VIM VG+ G GKTTT KLA Y++++ L DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 140 AAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHL 199
A A++QL +P DP + +N +I+IVDTSGR + L
Sbjct: 142 AGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSL 201
Query: 200 MRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK 259
E+ P I ++D + GQ +Q K F + + +I+TKLDG K
Sbjct: 202 FEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255
Query: 260 GG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
GG L+A+A S P+ FIG GE I+D + F F++ LL
Sbjct: 256 GGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLL 295
>UNIPROTKB|Q4R965 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9541 "Macaca fascicularis" [GO:0005525 "GTP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=ISS]
[GO:0008144 "drug binding" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=ISS] [GO:0019003 "GDP binding" evidence=ISS]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=ISS] [GO:0042493 "response to drug" evidence=ISS]
[GO:0045047 "protein targeting to ER" evidence=ISS] [GO:0003924
"GTPase activity" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005634 GO:GO:0042493
GO:GO:0016607 GO:GO:0008144 GO:GO:0003924 GO:GO:0006184
GO:GO:0019003 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0045047 GO:GO:0005786 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 HOVERGEN:HBG061072 EMBL:AB168231
ProteinModelPortal:Q4R965 SMR:Q4R965 PRIDE:Q4R965 Uniprot:Q4R965
Length = 504
Score = 302 (111.4 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 86/281 (30%), Positives = 131/281 (46%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
I+N+++ + E+ + LL+ADV + + L +K I +++ +
Sbjct: 22 IINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81
Query: 84 XXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139
L P + K K VIM VG+ G GKTTT KLA Y++++ L DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 140 AAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHL 199
A A++QL +P DP + +N +I+IVDTSGR + L
Sbjct: 142 AGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSL 201
Query: 200 MRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK 259
E+ P I ++D + GQ +Q K F + + +I+TKLDG K
Sbjct: 202 FEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255
Query: 260 GG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
GG L+A+A S P+ FIG GE I+D + F F++ LL
Sbjct: 256 GGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLL 295
>UNIPROTKB|Q5R4R6 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9601 "Pongo abelii" [GO:0005525 "GTP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=ISS]
[GO:0006184 "GTP catabolic process" evidence=ISS] [GO:0008144 "drug
binding" evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=ISS] [GO:0042493
"response to drug" evidence=ISS] [GO:0045047 "protein targeting to
ER" evidence=ISS] [GO:0003924 "GTPase activity" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 HOVERGEN:HBG061072 EMBL:CR861178 RefSeq:NP_001126912.1
UniGene:Pab.3814 ProteinModelPortal:Q5R4R6 SMR:Q5R4R6 PRIDE:Q5R4R6
GeneID:100173929 KEGG:pon:100173929 InParanoid:Q5R4R6
Uniprot:Q5R4R6
Length = 504
Score = 302 (111.4 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 86/281 (30%), Positives = 131/281 (46%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
I+N+++ + E+ + LL+ADV + + L +K I +++ +
Sbjct: 22 IINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81
Query: 84 XXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139
L P + K K VIM VG+ G GKTTT KLA Y++++ L DTFR
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141
Query: 140 AAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHL 199
A A++QL +P DP + +N +I+IVDTSGR + L
Sbjct: 142 AGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSL 201
Query: 200 MRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK 259
E+ P I ++D + GQ +Q K F + + +I+TKLDG K
Sbjct: 202 FEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255
Query: 260 GG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
GG L+A+A S P+ FIG GE I+D + F F++ LL
Sbjct: 256 GGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLL 295
>UNIPROTKB|P0AGD7 [details] [associations]
symbol:ffh species:83333 "Escherichia coli K-12"
[GO:0048500 "signal recognition particle" evidence=IEA;IMP]
[GO:0005525 "GTP binding" evidence=IEA;ISS;IMP;IDA] [GO:0006612
"protein targeting to membrane" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0003924 "GTPase
activity" evidence=IEA;ISS;IMP;IDA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0006184 "GTP catabolic process" evidence=IEA;IMP]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006612 GO:GO:0003924 GO:GO:0008312 PDB:2XXA PDBsum:2XXA
TCDB:3.A.5.1.1 GO:GO:0006614 SUPFAM:SSF47364 PDB:2XKV PDBsum:2XKV
EMBL:X01818 PDB:2J28 PDBsum:2J28 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI PIR:E65039
RefSeq:NP_417101.1 RefSeq:YP_490833.1 PDB:1DUL PDB:1HQ1 PDB:2PXB
PDB:2PXD PDB:2PXE PDB:2PXF PDB:2PXK PDB:2PXL PDB:2PXP PDB:2PXQ
PDB:2PXT PDB:2PXU PDB:2PXV PDB:3LQX PDBsum:1DUL PDBsum:1HQ1
PDBsum:2PXB PDBsum:2PXD PDBsum:2PXE PDBsum:2PXF PDBsum:2PXK
PDBsum:2PXL PDBsum:2PXP PDBsum:2PXQ PDBsum:2PXT PDBsum:2PXU
PDBsum:2PXV PDBsum:3LQX ProteinModelPortal:P0AGD7 SMR:P0AGD7
DIP:DIP-31865N IntAct:P0AGD7 MINT:MINT-1218614 PRIDE:P0AGD7
EnsemblBacteria:EBESCT00000004690 EnsemblBacteria:EBESCT00000014850
GeneID:12933092 GeneID:947102 KEGG:ecj:Y75_p2558 KEGG:eco:b2610
PATRIC:32120619 EchoBASE:EB0296 EcoGene:EG10300
ProtClustDB:PRK10867 BioCyc:EcoCyc:EG10300-MONOMER
BioCyc:ECOL316407:JW5414-MONOMER EvolutionaryTrace:P0AGD7
Genevestigator:P0AGD7 GO:GO:0048500 Uniprot:P0AGD7
Length = 453
Score = 298 (110.0 bits), Expect = 2.9e-26, P = 2.9e-26
Identities = 80/289 (27%), Positives = 135/289 (46%)
Query: 9 LKESLSKTACNL--KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELK-KII--- 62
L + LS+T N+ + + + K+ E+ LL+ADV + +N +K K +
Sbjct: 5 LTDRLSRTLRNISGRGRLTEDNV-KDTLREVRMALLEADVALPVVREFINRVKEKAVGHE 63
Query: 63 YSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
+K L ++ + L P V+++ G+ G GKTT++GKL +
Sbjct: 64 VNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123
Query: 123 FK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
+ K KK VL+ + D +R AA +QL L + V P + K
Sbjct: 124 LREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKF 183
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
D+++VDT+GRL +M E+ P E ++D TGQ+ + K F+
Sbjct: 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAKAFN 237
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
+ L +TG+++TK+DG +GG +I P+ F+G+GEK E L+ F+
Sbjct: 238 EALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFH 286
>UNIPROTKB|P66844 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003924
GO:GO:0006184 EMBL:BX842581 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 TCDB:3.A.5.2.2 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 PIR:D70747 RefSeq:NP_217432.1
RefSeq:NP_337496.1 RefSeq:YP_006516369.1 ProteinModelPortal:P66844
SMR:P66844 PRIDE:P66844 EnsemblBacteria:EBMYCT00000003158
EnsemblBacteria:EBMYCT00000069261 GeneID:13317709 GeneID:888242
GeneID:925291 KEGG:mtc:MT2984 KEGG:mtu:Rv2916c KEGG:mtv:RVBD_2916c
PATRIC:18128328 TubercuList:Rv2916c Uniprot:P66844
Length = 525
Score = 301 (111.0 bits), Expect = 3.3e-26, P = 3.3e-26
Identities = 81/281 (28%), Positives = 126/281 (44%)
Query: 21 KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKII----YSKKLFNTEQXXXX 76
K + + ID E+ LL+ADV + ++ +K+ S L +Q
Sbjct: 19 KGRLTDADIDATT-REIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKI 77
Query: 77 XXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
+ L F K P V+M+ G+ G GKTT GKLA + + + LL ACD
Sbjct: 78 VNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACD 137
Query: 137 TFRAAAYEQLLILGKYNDVPVIS-------EKKITDPXXXXXXXXXXXQKKNTDIVIVDT 189
R AA QL ++G+ VPV + E DP + K+ D+VIVDT
Sbjct: 138 LQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDT 197
Query: 190 SGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGL 249
+GRL LM + P E+ ++D GQ+ ++ F + + TG+
Sbjct: 198 AGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGV 251
Query: 250 IITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
+TKLDG +GG ++ + +P+ F GEK+ED +F+
Sbjct: 252 ALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFH 292
>RGD|2323636 [details] [associations]
symbol:Fam177a1 "family with sequence similarity 177, member A1"
species:10116 "Rattus norvegicus" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:2323636 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
IPI:IPI00387699 PRIDE:F1M7P5 Ensembl:ENSRNOT00000052076
ArrayExpress:F1M7P5 Uniprot:F1M7P5
Length = 500
Score = 300 (110.7 bits), Expect = 3.3e-26, P = 3.3e-26
Identities = 91/283 (32%), Positives = 135/283 (47%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
I+N+++ + E+ + LL+ADV + + L +K I +++ +
Sbjct: 22 IINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81
Query: 84 XXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK--KSVLLAACDT 137
L P + K K VIM VG+ G GKTTT KLA YF +RK K+ L+ A DT
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLA-YFYQRKGWKTCLICA-DT 139
Query: 138 FRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQS 197
FRA A++QL +P DP + +N +I+IVDTSGR +
Sbjct: 140 FRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQED 199
Query: 198 HLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGT 257
L E+ P I ++D + GQ +Q K F + + +I+TKLDG
Sbjct: 200 SLFEEMLQVSNAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGH 253
Query: 258 TKGG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
KGG L+A+A S P+ FIG GE I+D + F F++ LL
Sbjct: 254 AKGGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLL 295
>RGD|621390 [details] [associations]
symbol:Srp54 "signal recognition particle 54A" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003924 "GTPase activity" evidence=IEA;ISO] [GO:0005525 "GTP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA;ISO] [GO:0006184 "GTP catabolic
process" evidence=ISO] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0008144 "drug
binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008312 "7S RNA binding" evidence=IEA;ISO]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0019003 "GDP binding"
evidence=IEA;ISO] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA;ISO] [GO:0042493 "response to drug"
evidence=IEA;ISO] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045047 "protein targeting to ER"
evidence=ISO] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:621390 GO:GO:0005525 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI EMBL:BC079117 IPI:IPI00391089 RefSeq:NP_446323.1
UniGene:Rn.24880 ProteinModelPortal:Q6AYB5 SMR:Q6AYB5 STRING:Q6AYB5
PRIDE:Q6AYB5 Ensembl:ENSRNOT00000049937 GeneID:116650
KEGG:rno:116650 UCSC:RGD:621390 InParanoid:Q6AYB5 NextBio:619403
ArrayExpress:Q6AYB5 Genevestigator:Q6AYB5
GermOnline:ENSRNOG00000032776 Uniprot:Q6AYB5
Length = 504
Score = 300 (110.7 bits), Expect = 3.5e-26, P = 3.5e-26
Identities = 91/283 (32%), Positives = 135/283 (47%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
I+N+++ + E+ + LL+ADV + + L +K I +++ +
Sbjct: 22 IINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81
Query: 84 XXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK--KSVLLAACDT 137
L P + K K VIM VG+ G GKTTT KLA YF +RK K+ L+ A DT
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLA-YFYQRKGWKTCLICA-DT 139
Query: 138 FRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQS 197
FRA A++QL +P DP + +N +I+IVDTSGR +
Sbjct: 140 FRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQED 199
Query: 198 HLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGT 257
L E+ P I ++D + GQ +Q K F + + +I+TKLDG
Sbjct: 200 SLFEEMLQVSNAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGH 253
Query: 258 TKGG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
KGG L+A+A S P+ FIG GE I+D + F F++ LL
Sbjct: 254 AKGGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLL 295
>SGD|S000006292 [details] [associations]
symbol:SRP54 "Signal recognition particle (SRP) subunit
(homolog of mammalian SRP54)" species:4932 "Saccharomyces
cerevisiae" [GO:0008312 "7S RNA binding" evidence=IEA;IDA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA;IMP] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=IC;ISA] [GO:0005525 "GTP binding"
evidence=IEA;ISA] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0005048 "signal sequence binding" evidence=IPI] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005096 "GTPase activator activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0045047
"protein targeting to ER" evidence=IPI] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA;IDA] [GO:0043547 "positive regulation of GTPase
activity" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 SGD:S000006292
GO:GO:0005525 GO:GO:0005096 GO:GO:0043547 GO:GO:0003924
GO:GO:0006184 EMBL:BK006949 EMBL:U51033 GO:GO:0005048 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824 OrthoDB:EOG4TMV9N
EMBL:X16908 EMBL:M55517 EMBL:X51614 PIR:S69073 RefSeq:NP_015413.1
ProteinModelPortal:P20424 SMR:P20424 DIP:DIP-2943N IntAct:P20424
MINT:MINT-484768 STRING:P20424 PaxDb:P20424 PeptideAtlas:P20424
EnsemblFungi:YPR088C GeneID:856203 KEGG:sce:YPR088C CYGD:YPR088c
OMA:TAGRHKE NextBio:981405 Genevestigator:P20424 GermOnline:YPR088C
Uniprot:P20424
Length = 541
Score = 300 (110.7 bits), Expect = 4.8e-26, P = 4.8e-26
Identities = 76/214 (35%), Positives = 109/214 (50%)
Query: 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL 146
S EK + KK K +IM VG+ G GKTT+ KLA Y+ KR V L DTFRA A++QL
Sbjct: 97 SEEKAFVPKKRKTNIIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQL 156
Query: 147 LILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXX 206
+P TDP +K+ DI+IVDTSGR + L +E+
Sbjct: 157 KQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEI 216
Query: 207 XXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGG-ILAA 265
P + +++D + GQ Q K F + +I+TK+DG +GG ++A
Sbjct: 217 SNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGGGAISA 270
Query: 266 IAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
+A + P+ FIG GE I DL+ F+ F++ LL
Sbjct: 271 VAAT-NTPIIFIGTGEHIHDLEKFSPKSFISKLL 303
>TIGR_CMR|APH_0349 [details] [associations]
symbol:APH_0349 "signal recognition particle protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_504956.1 ProteinModelPortal:Q2GKZ5 STRING:Q2GKZ5
GeneID:3930944 KEGG:aph:APH_0349 PATRIC:20949288
BioCyc:APHA212042:GHPM-378-MONOMER Uniprot:Q2GKZ5
Length = 449
Score = 294 (108.6 bits), Expect = 7.7e-26, P = 7.7e-26
Identities = 89/287 (31%), Positives = 136/287 (47%)
Query: 21 KSLIVNKKIDKNLYNELESDLLKADVGFETT-QFLLNELKKIIYSKKLFNT--EQXXXXX 77
K I +K D + ++ LL ADV +F+ N KI+ + EQ
Sbjct: 19 KREISSKDFDL-VIEDITQALLDADVNLGVVDEFIENVKSKIVGGDVVKGVLPEQMVIKR 77
Query: 78 XXXXXXXXKSLEKPLIFKKCK-PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
EK + K K P VIM+VG+ GVGKTT K+A KK K+ L+A+ D
Sbjct: 78 IEECLIEVLGNEKSALDLKGKIPAVIMMVGLQGVGKTTNTVKVALRLKKDSKNPLVASLD 137
Query: 137 TFRAAAYEQLLILGK---YNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRL 193
+R AA EQL +L + +P++ E+K P + K D+V++DT+GRL
Sbjct: 138 VYRPAAREQLKVLADGVGIDSLPIVEEQK---PLDIAKRAMREARLKGHDVVLLDTAGRL 194
Query: 194 STQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITK 253
++ EL P EI L++D GQ+ ++ +++F++ L ITG I T+
Sbjct: 195 HINQDMIDELKCVKKEVS------PAEIVLVVDSLMGQDAVTMVRKFNEELGITGTIFTR 248
Query: 254 LDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
DG +GG + ++ P+ F+ GEK EDL F +LN
Sbjct: 249 ADGDPRGGAILSMKLVAGCPIKFMSTGEKPEDLDDFYPDRIARRMLN 295
>UNIPROTKB|E1C6G6 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0008144 GO:GO:0003924
GO:GO:0043021 GO:GO:0019003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729
GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:AADN02003392
IPI:IPI00581279 RefSeq:XP_421238.1 ProteinModelPortal:E1C6G6
PRIDE:E1C6G6 Ensembl:ENSGALT00000016327 GeneID:423322
KEGG:gga:423322 NextBio:20825811 Uniprot:E1C6G6
Length = 504
Score = 296 (109.3 bits), Expect = 9.7e-26, P = 9.7e-26
Identities = 89/283 (31%), Positives = 135/283 (47%)
Query: 24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
I+N+++ + E+ + LL+ADV + + L +K I +++ +
Sbjct: 22 IINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK 81
Query: 84 XXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK--KSVLLAACDT 137
L P + K K +IM VG+ G GKTTT KLA YF +RK K+ L+ A DT
Sbjct: 82 ELVKLVDPGVKAWTPTKGKQNIIMFVGLQGSGKTTTCSKLA-YFYQRKGWKTCLICA-DT 139
Query: 138 FRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQS 197
+RA A++QL +P DP + +N +I+IVDTSGR +
Sbjct: 140 YRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQED 199
Query: 198 HLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGT 257
L E+ P I ++D + GQ +Q K F + + +I+TKLDG
Sbjct: 200 SLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGH 253
Query: 258 TKGG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
KGG L+A+A S P+ FIG GE I+D + F F++ LL
Sbjct: 254 AKGGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLL 295
>DICTYBASE|DDB_G0275455 [details] [associations]
symbol:srp54 "signal recognition particle 54 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 dictyBase:DDB_G0275455 GO:GO:0005525 GO:GO:0045335
GO:GO:0003924 GO:GO:0006184 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 OMA:GQQVVKI RefSeq:XP_643640.1
HSSP:P61011 ProteinModelPortal:Q75K18 STRING:Q75K18
EnsemblProtists:DDB0232373 GeneID:8620227 KEGG:ddi:DDB_G0275455
Uniprot:Q75K18
Length = 542
Score = 294 (108.6 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 85/297 (28%), Positives = 138/297 (46%)
Query: 9 LKESLSKTACNL-KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELK-KIIYSKK 66
L LS +L ++ IVN+ L E+ + L K+DV + +K KI +
Sbjct: 6 LGNQLSSALRSLNETTIVNEDTINQLLKEVGNALSKSDVSMSLIIQMRKNIKDKIKLDQM 65
Query: 67 LFNTEQXXXXXXXXXXXXXKSLEKPL-IFK--KCKPFVIMIVGVNGVGKTTTIGKLANYF 123
+ + L+ + ++K K K ++M VG+ G GKTT++ KLA ++
Sbjct: 66 AAGLNKRKIIKQVVFDELIRLLDPGVPLWKPTKGKSNIVMFVGLQGAGKTTSVTKLAYFY 125
Query: 124 KKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTD 183
KK+ S + DTFRA A++Q+ + + DP +K T+
Sbjct: 126 KKKGFSTAIVCADTFRAGAFDQVRHNAAKAKIHYYGSETEKDPVVVARTGVDIFKKDGTE 185
Query: 184 IVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKI 243
I+IVDTSGR S L E+ P ++D + GQ Q F
Sbjct: 186 IIIVDTSGRHKQDSELFEEMKQIETAVK------PDNCIFVMDSSIGQAAYEQATAFRSS 239
Query: 244 LRITGLIITKLDGTTKGG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
+++ +IITK+DG + GG ++A+A + P+ FIG GE + DL++F+ FV+ LL
Sbjct: 240 VKVGSIIITKMDGNSMGGGAISAVAAT-NTPIIFIGTGEHLTDLELFDPSTFVSKLL 295
>UNIPROTKB|G3V4F7 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 Pfam:PF00448 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0048500 EMBL:AL049776
HGNC:HGNC:11301 ChiTaRS:SRP54 ProteinModelPortal:G3V4F7 SMR:G3V4F7
Ensembl:ENST00000555557 ArrayExpress:G3V4F7 Bgee:G3V4F7
Uniprot:G3V4F7
Length = 440
Score = 289 (106.8 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 73/205 (35%), Positives = 102/205 (49%)
Query: 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV 155
K K VIM VG+ G GKTTT KLA Y++++ L DTFRA A++QL +
Sbjct: 34 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI 93
Query: 156 PVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXF 215
P DP + +N +I+IVDTSGR + L E+
Sbjct: 94 PFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ---- 149
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGG-ILAAIAKKYSIPL 274
P I ++D + GQ +Q K F + + +I+TKLDG KGG L+A+A S P+
Sbjct: 150 --PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKS-PI 206
Query: 275 YFIGIGEKIEDLQIFNAVDFVNALL 299
FIG GE I+D + F F++ LL
Sbjct: 207 IFIGTGEHIDDFEPFKTQPFISKLL 231
>WB|WBGene00009012 [details] [associations]
symbol:F21D5.7 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008312 "7S
RNA binding" evidence=IEA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0006915 GO:GO:0002119 GO:GO:0003924
GO:GO:0006184 GO:GO:0000003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 EMBL:Z68161 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
OMA:GQQVVKI GO:GO:0048500 EMBL:Z54271 PIR:A88763 PIR:T21140
RefSeq:NP_501507.1 HSSP:P70722 ProteinModelPortal:G5EE80 SMR:G5EE80
EnsemblMetazoa:F21D5.7.1 EnsemblMetazoa:F21D5.7.2 GeneID:259584
KEGG:cel:CELE_F21D5.7 CTD:259584 WormBase:F21D5.7 NextBio:952170
Uniprot:G5EE80
Length = 496
Score = 289 (106.8 bits), Expect = 5.5e-25, P = 5.5e-25
Identities = 85/285 (29%), Positives = 135/285 (47%)
Query: 21 KSLIVNK-KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXX 79
+S ++N+ ++D L E+ + L+++DV + L + +KK I +++
Sbjct: 19 QSTVINEGELDLML-KEVCTALIESDVHIRLVKQLKDNVKKAINFEEIVGGANKRRYIQK 77
Query: 80 XXXXXXKSLEKPLI--FK--KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135
L P + F K + V M VG+ G GKTTT K+A Y++++ L
Sbjct: 78 TVFNELLKLVDPGVTPFTPTKGRRNVFMFVGLQGSGKTTTCTKMAYYYQRKGWKTCLICA 137
Query: 136 DTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLST 195
DTFRA A++QL +P DP ++ +I+IVDTSGR
Sbjct: 138 DTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTQEGFEIIIVDTSGRHKQ 197
Query: 196 QSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLD 255
++ L E+ P + ++D + GQ +Q + FS+ + + +IITKLD
Sbjct: 198 EASLFEEMLQVSNAVT------PDNVVFVMDASIGQACEAQARAFSQTVDVASVIITKLD 251
Query: 256 GTTKGG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
KGG L+A+A S P+ FIG GE I+D +IF FV LL
Sbjct: 252 SHAKGGGALSAVAVTKS-PVIFIGTGEHIDDFEIFKPKSFVQKLL 295
>GENEDB_PFALCIPARUM|PF14_0477 [details] [associations]
symbol:PF14_0477 "signal recognition particle
54 kDa protein, putative" species:5833 "Plasmodium falciparum"
[GO:0005048 "signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 287 (106.1 bits), Expect = 9.4e-25, P = 9.4e-25
Identities = 72/205 (35%), Positives = 100/205 (48%)
Query: 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV 155
K K VI+ VG+ G GKTTT K A+Y++K+ L DTFRA A++QL +
Sbjct: 98 KGKRNVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKI 157
Query: 156 PVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXF 215
P DP K D++IVD+SGR ++ L E+
Sbjct: 158 PFYGSYSEVDPVKIATDGVNAFLKDKYDLIIVDSSGRHKQENELFEEMIQVENSIQ---- 213
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGG-ILAAIAKKYSIPL 274
P EI +ID + GQ+ Q F + + +IITK+DG KGG L+A+A P+
Sbjct: 214 --PEEIIFVIDSHIGQSCHDQAMAFKNSVSLGSIIITKIDGHAKGGGALSAVAAT-GCPI 270
Query: 275 YFIGIGEKIEDLQIFNAVDFVNALL 299
FIG GE + D + F A FV+ LL
Sbjct: 271 TFIGTGEHVNDFEKFEAKSFVSRLL 295
>UNIPROTKB|Q8IKX4 [details] [associations]
symbol:PF14_0477 "Signal recognition particle SRP54,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005048
"signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 287 (106.1 bits), Expect = 9.4e-25, P = 9.4e-25
Identities = 72/205 (35%), Positives = 100/205 (48%)
Query: 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV 155
K K VI+ VG+ G GKTTT K A+Y++K+ L DTFRA A++QL +
Sbjct: 98 KGKRNVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKI 157
Query: 156 PVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXF 215
P DP K D++IVD+SGR ++ L E+
Sbjct: 158 PFYGSYSEVDPVKIATDGVNAFLKDKYDLIIVDSSGRHKQENELFEEMIQVENSIQ---- 213
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGG-ILAAIAKKYSIPL 274
P EI +ID + GQ+ Q F + + +IITK+DG KGG L+A+A P+
Sbjct: 214 --PEEIIFVIDSHIGQSCHDQAMAFKNSVSLGSIIITKIDGHAKGGGALSAVAAT-GCPI 270
Query: 275 YFIGIGEKIEDLQIFNAVDFVNALL 299
FIG GE + D + F A FV+ LL
Sbjct: 271 TFIGTGEHVNDFEKFEAKSFVSRLL 295
>NCBI_NP|NP_355632.2 [details] [associations]
symbol:ffh "signal recognition particle protein"
species:176299 "Agrobacterium fabrum str. C58" [GO:0009306 "protein
secretion" evidence=ISS] REFSEQ:NC_003062 Ncbi:NP_355632
Length = 523
Score = 282 (104.3 bits), Expect = 4.1e-24, P = 4.1e-24
Identities = 72/196 (36%), Positives = 105/196 (53%)
Query: 99 PFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDV-- 155
P VIM+VG+ G GKTTT GK+A R KK VL+A+ DT R AA EQL LG V
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDT 159
Query: 156 -PVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXX 214
P+I+ + TD + D+VI+DT+GR LM E+
Sbjct: 160 LPIIAGQSPTD---IAARAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSN--- 213
Query: 215 FELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPL 274
P+EI L+ D TGQ+ ++ + F + + ITGL++T++DG +GG ++ P+
Sbjct: 214 ---PHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPI 270
Query: 275 YFIGIGEKIEDLQIFN 290
IGIGE++ +L F+
Sbjct: 271 KLIGIGERMNELDEFH 286
>TIGR_CMR|SPO_3246 [details] [associations]
symbol:SPO_3246 "signal recognition particle protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_168449.1
ProteinModelPortal:Q5LNF9 GeneID:3195205 KEGG:sil:SPO3246
PATRIC:23379937 Uniprot:Q5LNF9
Length = 510
Score = 269 (99.8 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 83/291 (28%), Positives = 138/291 (47%)
Query: 9 LKESLSKTACNL-KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELK-KII---Y 63
L E LS L K ++++ K E+ LL+ADV + + ++ K
Sbjct: 5 LSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKAVQDKATGQAV 64
Query: 64 SKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFK-KCKPFVIMIVGVNGVGKTTTIGKLANY 122
+K + +Q + E P K P I++VG+ G GKTTT KLA
Sbjct: 65 TKSVTPGQQVVKIVHDTLVDVLRGAEDPGKLKIDNPPAPILMVGLQGGGKTTTTAKLAKR 124
Query: 123 FKKRK-KSVLLAACDTFRAAAYEQLLILGKY---NDVPVISEKKITDPXXXXXXXXXXXQ 178
K+R+ K VL+A+ D +R AA +QL +LG + +P++ +K P
Sbjct: 125 LKEREGKKVLMASLDVYRPAAMDQLAVLGAQIGVDTLPIVPGQK---PVDIAKRAKQQAM 181
Query: 179 KKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIK 238
D+ ++DT+GRL LM+E+ P E L++DG TGQ + +
Sbjct: 182 MGGYDVYMLDTAGRLHIDQVLMQEVEDVRNVVT------PRETLLVVDGLTGQVAVEVAE 235
Query: 239 EFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIF 289
EF + I+G+++T++DG +GG ++ P+ F+G+GEK++ L+ F
Sbjct: 236 EFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETF 286
>TAIR|locus:2118701 [details] [associations]
symbol:AT4G30600 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0005047 "signal recognition particle
binding" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0006605 "protein targeting" evidence=ISS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0006623 "protein targeting to vacuole" evidence=RCA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0016192
"vesicle-mediated transport" evidence=RCA] [GO:0048193 "Golgi
vesicle transport" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005783 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003924
EMBL:AL161577 SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
HOGENOM:HOG000201671 OMA:LILWSSC EMBL:AY065066 EMBL:AY133612
IPI:IPI00534083 PIR:A85358 RefSeq:NP_194789.1 UniGene:At.4581
HSSP:P83749 ProteinModelPortal:Q9M0A0 SMR:Q9M0A0 STRING:Q9M0A0
PaxDb:Q9M0A0 PRIDE:Q9M0A0 EnsemblPlants:AT4G30600.1 GeneID:829183
KEGG:ath:AT4G30600 TAIR:At4g30600 InParanoid:Q9M0A0
PhylomeDB:Q9M0A0 ProtClustDB:CLSN2685629 ArrayExpress:Q9M0A0
Genevestigator:Q9M0A0 Uniprot:Q9M0A0
Length = 634
Score = 265 (98.3 bits), Expect = 5.0e-22, P = 5.0e-22
Identities = 66/214 (30%), Positives = 107/214 (50%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157
KP+V++ VGVNGVGK+T + K+A + ++ K SV++AACDTFR+ A EQL + +P+
Sbjct: 427 KPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPI 486
Query: 158 ISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFEL 217
+ DP + +D+V+VDT+GR+ LMR L
Sbjct: 487 FEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIN------LNQ 540
Query: 218 PYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLIITKLDGTTKGGILAAIA 267
P + + + G + + Q+ +F++ L I G+++TK D T + AA++
Sbjct: 541 PDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFD-TIDDKVGAALS 599
Query: 268 KKY--SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
Y P+ F+G G+ DL+ N V LL
Sbjct: 600 MVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLL 633
>WB|WBGene00009521 [details] [associations]
symbol:F38A1.8 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0005785 "signal recognition
particle receptor complex" evidence=IEA] [GO:0006184 "GTP catabolic
process" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0018996 GO:GO:0003924 GO:GO:0048477
SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:FO080472 EMBL:FO081324 EMBL:FO081776
RefSeq:NP_741303.2 ProteinModelPortal:G4RYA5 SMR:G4RYA5
EnsemblMetazoa:F38A1.8 GeneID:185438 KEGG:cel:CELE_F38A1.8
CTD:185438 WormBase:F38A1.8 NextBio:928280 Uniprot:G4RYA5
Length = 625
Score = 240 (89.5 bits), Expect = 2.4e-19, P = 2.4e-19
Identities = 69/222 (31%), Positives = 110/222 (49%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY-NDVP 156
+P+VI+ GVNGVGK+T + K+ + + K VL+AA DTFRA A EQL +Y ND+
Sbjct: 411 RPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAVEQLRTHARYLNDLH 470
Query: 157 ----VISEKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXX 211
++ E+ DP +++ D+V+VDT+GR+ LMREL
Sbjct: 471 KNSVLLHEQGYGKDPAGLAAAAIKKAAEQDFDVVLVDTAGRMQDNEPLMRELAKLIRVNE 530
Query: 212 XXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR-----------ITGLIITKLDGTTKG 260
P + + + G + Q+ +F++ L I G+++TK D T
Sbjct: 531 ------PDLVLFVGEALVGNEAVDQLVKFNEALANHASPGQKPRLIDGIVLTKFD-TIDD 583
Query: 261 GILAAIAKKYSI--PLYFIGIGEKIEDLQIFNAVDFVNALLN 300
+ AA++ Y P+ F+G G+ DL+ N V++LLN
Sbjct: 584 KVGAAVSMTYITGQPIVFVGCGQTYSDLRNLNVGAVVHSLLN 625
>ASPGD|ASPL0000006202 [details] [associations]
symbol:AN6627 species:162425 "Emericella nidulans"
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005785
"signal recognition particle receptor complex" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0045047 "protein targeting to ER" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005047 "signal
recognition particle binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005789
"endoplasmic reticulum membrane" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 EMBL:BN001301 SUPFAM:SSF64356
EMBL:AACD01000110 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 HOGENOM:HOG000201671
OrthoDB:EOG42Z7ZQ RefSeq:XP_664231.1 ProteinModelPortal:Q5AYK3
STRING:Q5AYK3 EnsemblFungi:CADANIAT00007408 GeneID:2870372
KEGG:ani:AN6627.2 OMA:THETGRR Uniprot:Q5AYK3
Length = 636
Score = 237 (88.5 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 68/219 (31%), Positives = 106/219 (48%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI-------LG 150
+P+VI IVGVNGVGK+T +GK+ + + +L+AACDTFR+ A EQL + L
Sbjct: 425 RPYVISIVGVNGVGKSTNLGKICYFLLQNNYRILIAACDTFRSGAVEQLRVHARNLKELS 484
Query: 151 KYNDVPVIS--EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXX 207
+V + EK D N D+V++DT+GR LM L
Sbjct: 485 ARENVGAVELYEKGYGKDAANVAKDAVEYGAANNFDVVLIDTAGRRHNDQRLMSSLEKFA 544
Query: 208 XXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKIL----RITGLIITKLDGTTKG--- 260
F P +IF++ + G +++ Q + F++ + G II+K D T G
Sbjct: 545 K------FAQPNKIFMVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCD--TVGDMV 596
Query: 261 GILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
G L ++ IP+ F+G+G+ DL+ + VN L+
Sbjct: 597 GTLVSMVHATGIPIVFLGVGQHYGDLRGLSVPWAVNLLM 635
>POMBASE|SPBC3B9.03 [details] [associations]
symbol:SPBC3B9.03 "signal recognition particle receptor
alpha subunit Srp101 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003924 "GTPase activity" evidence=ISM] [GO:0005047
"signal recognition particle binding" evidence=ISO] [GO:0005525
"GTP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPBC3B9.03
GO:GO:0005525 GO:GO:0005829 GO:GO:0005634 EMBL:CU329671
GO:GO:0003924 GenomeReviews:CU329671_GR SUPFAM:SSF64356
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 HSSP:Q6MTB9 HOGENOM:HOG000201671
PIR:T40342 RefSeq:NP_596660.1 ProteinModelPortal:O43032
STRING:O43032 EnsemblFungi:SPBC3B9.03.1 GeneID:2540909
KEGG:spo:SPBC3B9.03 OMA:PVEANND OrthoDB:EOG42Z7ZQ NextBio:20802024
Uniprot:O43032
Length = 547
Score = 235 (87.8 bits), Expect = 6.3e-19, P = 6.3e-19
Identities = 78/301 (25%), Positives = 140/301 (46%)
Query: 10 KESLSKTACNLKSLIVNKKIDKNLYNEL-ES---DLLKADVG-FETTQFLLNELKKIIYS 64
+E LS ++ + K + ++ EL ES L+ VG F+T + +N+ +
Sbjct: 258 EEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKA----FR 313
Query: 65 KKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK 124
+L T+ +S+ K + +P+ I ++GVNGVGK+TT+ K+A +
Sbjct: 314 DRL--TQILTPSTSLDLLHSIRSVRK----NENRPYTISLIGVNGVGKSTTLAKIAYWLL 367
Query: 125 KRKKSVLLAACDTFRAAAYEQL------LILGKYNDVPVISEKKITDPXXXXXXXXXXXQ 178
+L+AACDTFR+ A EQL L K + + + ++ D +
Sbjct: 368 SNNFRILVAACDTFRSGAIEQLGVHVKNLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAK 427
Query: 179 KKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIK 238
+ + D++++DT+GR LM L +IF + + G ++L+Q K
Sbjct: 428 QNSFDVILIDTAGRRHNDQRLMGSLEKFTKATKLD------KIFQVAEALVGTDSLAQAK 481
Query: 239 EFSKILR---ITGLIITKLDGTTK-GGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDF 294
F L + G II+K+D + G++ + +P+ F+GIG+ DL+ + VD+
Sbjct: 482 HFQASLYHRPLDGFIISKVDTVGQLVGVMVGMVYAVRVPIIFVGIGQTYSDLRTLS-VDW 540
Query: 295 V 295
V
Sbjct: 541 V 541
>CGD|CAL0003010 [details] [associations]
symbol:orf19.3952 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA]
[GO:0045047 "protein targeting to ER" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 CGD:CAL0003010 GO:GO:0005525
GO:GO:0003924 EMBL:AACQ01000012 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
RefSeq:XP_721861.1 ProteinModelPortal:Q5AK68 STRING:Q5AK68
GeneID:3636513 KEGG:cal:CaO19.3952 Uniprot:Q5AK68
Length = 535
Score = 212 (79.7 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 63/223 (28%), Positives = 108/223 (48%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI----LGKYN 153
+P+VI +VGVNGVGK+T + KLA +F + +VL+ ACDTFR+ A EQL + L + N
Sbjct: 320 RPYVISVVGVNGVGKSTNLAKLAFWFLQNNLNVLICACDTFRSGAVEQLKVHVNNLNRLN 379
Query: 154 DVPVISEKKIT---------DPXXXXXXXXXXXQKKNT-DIVIVDTSGRLSTQSHLMREL 203
+ ++ +I D ++N DIV++DT+GR + + LM L
Sbjct: 380 EASTNTKSRIDIFEKGYGSGDHVVQTAKQAVQYAEENKFDIVLIDTAGRTHSNAKLMAPL 439
Query: 204 XXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKIL----RITGLIITKLDGTTK 259
P +I ++ + G +++ Q F+K + II+K+D T
Sbjct: 440 KKFGDAAN------PNKIIMVGEALVGTDSVEQATNFNKAFGNKRTLDFFIISKVD--TV 491
Query: 260 G---GILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
G G + + ++P+ F+G G+ D++ + V L+
Sbjct: 492 GDLVGTMINMVMATNVPILFVGTGQTYTDIKRLSVKQVVEMLM 534
Score = 38 (18.4 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 23 LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKK 60
L NKK+ +Y + +D L + + LL+++K+
Sbjct: 276 LSANKKVTMAVYKQALTDELTKILTPNVSTDLLHDIKR 313
>TIGR_CMR|CJE_0061 [details] [associations]
symbol:CJE_0061 "flagellar biosynthetic protein FlhF"
species:195099 "Campylobacter jejuni RM1221" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0005525 "GTP binding"
evidence=ISS] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0017111 GO:GO:0043064 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
RefSeq:YP_178086.1 ProteinModelPortal:Q5HX99 STRING:Q5HX99
GeneID:3230824 KEGG:cjr:CJE0061 PATRIC:20041827 OMA:KVATNEY
BioCyc:CJEJ195099:GJC0-65-MONOMER Uniprot:Q5HX99
Length = 484
Score = 212 (79.7 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 66/207 (31%), Positives = 103/207 (49%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLA---NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYND 154
K ++M+VG GVGKTTT+ KLA Y KR K+ ++ DT+R A EQL K
Sbjct: 281 KQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITL-DTYRIGAVEQLFQYAKMMK 339
Query: 155 VPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXX 214
+P+I + D N ++++VDT G + +L
Sbjct: 340 LPIIDSIEPKD------LDEAIKSLNNCEVILVDTIGN---SQYDQSKLAKTKEFLMHSN 390
Query: 215 FELPYEIFLIIDGNTGQNTLSQI-KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIP 273
E+ ++ L++ NT Q L +I K FS L I LIITK D T G + ++ + +IP
Sbjct: 391 AEI--DVNLVVSANTKQEDLMEIYKNFS-FLNIDTLIITKFDETKVFGNIFSLVYETNIP 447
Query: 274 LYFIGIGEKI-EDLQIFNAVDFVNALL 299
L F IG+++ +DL++ N+ V+ +L
Sbjct: 448 LSFFSIGQEVPDDLEVANSDFLVHCIL 474
>DICTYBASE|DDB_G0277377 [details] [associations]
symbol:srpR "signal recognition particle receptor
alpha subunit" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005785
"signal recognition particle receptor complex" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005047 "signal
recognition particle binding" evidence=IEA;ISS] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 dictyBase:DDB_G0277377 GO:GO:0005525
GO:GO:0005789 GO:GO:0003924 GenomeReviews:CM000151_GR
EMBL:AAFI02000019 SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005785 GO:GO:0005047
HSSP:P08240 RefSeq:XP_642799.1 ProteinModelPortal:Q54ZR7
STRING:Q54ZR7 EnsemblProtists:DDB0252680 GeneID:8620992
KEGG:ddi:DDB_G0277377 OMA:LILWSSC ProtClustDB:CLSZ2846855
Uniprot:Q54ZR7
Length = 615
Score = 212 (79.7 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 63/214 (29%), Positives = 98/214 (45%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157
+P+ I+ GVNGVGK+T + K+ + +LAACDTFR+ A EQL +V +
Sbjct: 406 RPYSIVFSGVNGVGKSTNLAKVCYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLNVHL 465
Query: 158 ISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFEL 217
D + D+V++DT+GR+ LM+ L +L
Sbjct: 466 FERGYSKDAASVAQDAIAFAKDTGYDVVLIDTTGRMQNNEPLMKALSKLVNQNNV---DL 522
Query: 218 PYEIFLIIDGNTGQNTLSQI-KEFSKILRIT--------GLIITKLDGTTKGGILAAIAK 268
+ + GN G + L++ K S + T G+I+TK D T + AAI+
Sbjct: 523 VLFVGEALVGNDGVDQLTKFDKSLSLLANTTQTHIRTIDGIILTKFD-TIDDKVGAAISM 581
Query: 269 KYSI--PLYFIGIGEKIEDLQIFNAVDFVNALLN 300
YS P+ F+G G+ DL+ N V +LL+
Sbjct: 582 VYSTGHPILFLGTGQNYTDLKRMNIKSVVKSLLH 615
>UNIPROTKB|P08240 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005047 "signal recognition particle binding"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=TAS] [GO:0006613
"cotranslational protein targeting to membrane" evidence=TAS]
[GO:0016021 "integral to membrane" evidence=TAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=TAS]
[GO:0006987 "activation of signaling protein activity involved in
unfolded protein response" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0030968 "endoplasmic reticulum
unfolded protein response" evidence=TAS] [GO:0044267 "cellular
protein metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_17015 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0016021 Reactome:REACT_116125 GO:GO:0006987 EMBL:CH471065
GO:GO:0006412 GO:GO:0003924 SUPFAM:SSF64356 eggNOG:COG0552
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
PDB:2GO5 PDBsum:2GO5 PDB:2FH5 PDBsum:2FH5 CTD:6734
HOGENOM:HOG000201671 HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP
EMBL:X06272 EMBL:AK312377 EMBL:AP001318 EMBL:BC001162 EMBL:BC009110
EMBL:BC013583 IPI:IPI00385267 PIR:A29440 RefSeq:NP_001171313.1
RefSeq:NP_003130.2 UniGene:Hs.368376 ProteinModelPortal:P08240
SMR:P08240 IntAct:P08240 MINT:MINT-1404634 STRING:P08240
PhosphoSite:P08240 DMDM:20455516 PaxDb:P08240 PRIDE:P08240
DNASU:6734 Ensembl:ENST00000332118 GeneID:6734 KEGG:hsa:6734
UCSC:uc001qdh.3 GeneCards:GC11M126132 HGNC:HGNC:11307 MIM:182180
neXtProt:NX_P08240 PharmGKB:PA36131 InParanoid:P08240 OMA:KEGSDGP
ChiTaRS:SRPR EvolutionaryTrace:P08240 GenomeRNAi:6734 NextBio:26272
ArrayExpress:P08240 Bgee:P08240 CleanEx:HS_SRPR
Genevestigator:P08240 GermOnline:ENSG00000182934 Uniprot:P08240
Length = 638
Score = 204 (76.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 68/230 (29%), Positives = 108/230 (46%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI----LG 150
++ +P+V+ GVNGVGK+T + K++ + + SVL+AACDTFRA A EQL L
Sbjct: 414 RRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLS 473
Query: 151 ------KYNDVPVIS--EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMR 201
K+ ++ EK D + + D+V+VDT+GR+ + LM
Sbjct: 474 ALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMT 533
Query: 202 ELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLII 251
L P + + + G + Q+ +F++ L I G+++
Sbjct: 534 ALAKLITVNT------PDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVL 587
Query: 252 TKLDGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
TK D T + AAI+ Y S P+ F+G G+ DL+ NA V AL+
Sbjct: 588 TKFD-TIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>UNIPROTKB|F1NXV4 [details] [associations]
symbol:SRPR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005785 "signal recognition
particle receptor complex" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
OMA:LILWSSC GeneTree:ENSGT00550000074936 EMBL:AADN02042027
IPI:IPI00593518 Ensembl:ENSGALT00000001579 Uniprot:F1NXV4
Length = 644
Score = 204 (76.9 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 70/227 (30%), Positives = 106/227 (46%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI-LGKYNDV- 155
+P+V+ GVNGVGK+T + K++ + + SVL+AACDTFRA A EQL + N +
Sbjct: 423 RPYVVTFCGVNGVGKSTNLAKISFWLIENGFSVLIAACDTFRAGAVEQLRTHTRRLNALH 482
Query: 156 PVIS----------EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELX 204
P S EK D + + D+V+VDT+GR+ + LM L
Sbjct: 483 PPESHGGRTMVQLYEKGYGKDAAGIAMEAISYARNQGFDVVLVDTAGRMQDNAPLMTALA 542
Query: 205 XXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLIITKL 254
P + + + G + Q+ +F+K L I G+++TK
Sbjct: 543 KLIAVNA------PDLVLFVGEALVGNEAVDQLVKFNKALADHSMAQTPRLIDGIVLTKF 596
Query: 255 DGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
D T + AAI+ Y S P+ F+G G+ DL+ NA V AL+
Sbjct: 597 D-TIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 642
>TIGR_CMR|CHY_1010 [details] [associations]
symbol:CHY_1010 "flagellar biosynthesis protein FlhF"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0005198 "structural molecule activity" evidence=ISS]
[GO:0009426 "bacterial-type flagellum basal body, distal rod"
evidence=ISS] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0019861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0017111 GO:GO:0006614
eggNOG:COG1419 KO:K02404 RefSeq:YP_359857.1
ProteinModelPortal:Q3ADC7 STRING:Q3ADC7 GeneID:3728496
KEGG:chy:CHY_1010 PATRIC:21275153 HOGENOM:HOG000254735 OMA:IVESIRI
ProtClustDB:PRK05703 BioCyc:CHYD246194:GJCN-1009-MONOMER
Uniprot:Q3ADC7
Length = 350
Score = 197 (74.4 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 60/203 (29%), Positives = 96/203 (47%)
Query: 87 SLEKPLIFKKCKPFVIM-IVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYE 144
+L KP ++ + F + ++G GVGKTTT+ K+A +K + DTFR A E
Sbjct: 144 NLIKPY-YENIQDFPLKALIGPTGVGKTTTLAKIAGRLAIHEEKPIRFITLDTFRVGAVE 202
Query: 145 QLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNT-DIVIVDTSGRLSTQSHLMREL 203
QL I GKY V K P QK+N + + +DT+GR S + + ++EL
Sbjct: 203 QLKIYGKYLGTTV---KVAGSPMELWRAV----QKQNEGETIFIDTAGRPSKKQNQIQEL 255
Query: 204 XXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQI-KEFSKILRITGLIITKLDGTTKGGI 262
+I+L+I +I K+FS I+TK+D T K G+
Sbjct: 256 AGFLEAVKKEK-----DIYLVISATVKPEDAEKIAKDFSPC-GFNKFIVTKIDETDKFGV 309
Query: 263 LAAIAKKYSIPLYFIGIGEKIED 285
L + K+ P+ ++G+G+ + D
Sbjct: 310 LINLIVKFKKPIVYLGVGQNVPD 332
>MGI|MGI:1914648 [details] [associations]
symbol:Srpr "signal recognition particle receptor ('docking
protein')" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005785 "signal recognition particle
receptor complex" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 MGI:MGI:1914648 GO:GO:0005525 GO:GO:0003924
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 CTD:6734 HOGENOM:HOG000201671
HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:AK004967 EMBL:AK038017 EMBL:BC012512 EMBL:BC021839
IPI:IPI00119695 RefSeq:NP_080406.1 UniGene:Mm.284688
ProteinModelPortal:Q9DBG7 SMR:Q9DBG7 STRING:Q9DBG7
PhosphoSite:Q9DBG7 PaxDb:Q9DBG7 PRIDE:Q9DBG7
Ensembl:ENSMUST00000034541 GeneID:67398 KEGG:mmu:67398
UCSC:uc009osy.1 InParanoid:Q9DBG7 NextBio:324466 Bgee:Q9DBG7
Genevestigator:Q9DBG7 GermOnline:ENSMUSG00000032042 Uniprot:Q9DBG7
Length = 636
Score = 203 (76.5 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 68/230 (29%), Positives = 108/230 (46%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL-------L 147
++ +P+V+ GVNGVGK+T + K++ + + SVL+AACDTFRA A EQL
Sbjct: 412 RRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLT 471
Query: 148 IL---GKYNDVPVIS--EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMR 201
L K+ ++ EK D + + D+V+VDT+GR+ + LM
Sbjct: 472 ALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMT 531
Query: 202 ELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLII 251
L P + + + G + Q+ +F++ L I G+++
Sbjct: 532 ALAKLITVNT------PDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVL 585
Query: 252 TKLDGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
TK D T + AAI+ Y S P+ F+G G+ DL+ NA V AL+
Sbjct: 586 TKFD-TIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 634
>RGD|1311504 [details] [associations]
symbol:Srpr "signal recognition particle receptor ('docking
protein')" species:10116 "Rattus norvegicus" [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0005047 "signal recognition particle
binding" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:1311504 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 CTD:6734 HOGENOM:HOG000201671
HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:BC105782 IPI:IPI00362579 RefSeq:NP_001029322.1
UniGene:Rn.18349 SMR:Q3KRC3 STRING:Q3KRC3
Ensembl:ENSRNOT00000015177 GeneID:315548 KEGG:rno:315548
UCSC:RGD:1311504 InParanoid:Q3KRC3 NextBio:669402
Genevestigator:Q3KRC3 Uniprot:Q3KRC3
Length = 636
Score = 203 (76.5 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 68/230 (29%), Positives = 108/230 (46%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL-------L 147
++ +P+V+ GVNGVGK+T + K++ + + SVL+AACDTFRA A EQL
Sbjct: 412 RRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLT 471
Query: 148 IL---GKYNDVPVIS--EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMR 201
L K+ ++ EK D + + D+V+VDT+GR+ + LM
Sbjct: 472 ALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMT 531
Query: 202 ELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLII 251
L P + + + G + Q+ +F++ L I G+++
Sbjct: 532 ALAKLITVNT------PDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVL 585
Query: 252 TKLDGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
TK D T + AAI+ Y S P+ F+G G+ DL+ NA V AL+
Sbjct: 586 TKFD-TIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 634
>UNIPROTKB|Q3MHE8 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9913 "Bos taurus" [GO:0005525 "GTP binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 eggNOG:COG0552
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
EMBL:BC105264 IPI:IPI00695733 RefSeq:NP_001068590.1 UniGene:Bt.5518
HSSP:P08240 ProteinModelPortal:Q3MHE8 SMR:Q3MHE8 STRING:Q3MHE8
PRIDE:Q3MHE8 GeneID:281504 KEGG:bta:281504 CTD:6734
HOGENOM:HOG000201671 HOVERGEN:HBG047566 InParanoid:Q3MHE8
OrthoDB:EOG4W0XCP NextBio:20805473 Uniprot:Q3MHE8
Length = 639
Score = 203 (76.5 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 68/227 (29%), Positives = 106/227 (46%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI----LG--- 150
+P+V+ GVNGVGK+T + K++ + + SVL+AACDTFRA A EQL L
Sbjct: 418 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 477
Query: 151 ---KYNDVPVIS--EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELX 204
K+ ++ EK D + + D+V+VDT+GR+ + LM L
Sbjct: 478 PPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 537
Query: 205 XXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLIITKL 254
P + + + G + Q+ +F++ L I G+++TK
Sbjct: 538 KLITVNT------PDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKF 591
Query: 255 DGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
D T + AAI+ Y S P+ F+G G+ DL+ NA V AL+
Sbjct: 592 D-TIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 637
>UNIPROTKB|J9NTJ9 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
GeneTree:ENSGT00550000074936 EMBL:AAEX03003376 EMBL:AAEX03003378
EMBL:AAEX03003377 EMBL:AAEX03003379 Ensembl:ENSCAFT00000045313
Uniprot:J9NTJ9
Length = 637
Score = 201 (75.8 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 68/227 (29%), Positives = 106/227 (46%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI----LG--- 150
+P+V+ GVNGVGK+T + K++ + + SVL+AACDTFRA A EQL L
Sbjct: 416 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 475
Query: 151 ---KYNDVPVIS--EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELX 204
K+ ++ EK D + + D+V+VDT+GR+ + LM L
Sbjct: 476 PPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 535
Query: 205 XXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLIITKL 254
P + + + G + Q+ +F++ L I G+++TK
Sbjct: 536 KLITVNT------PDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKF 589
Query: 255 DGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
D T + AAI+ Y S P+ F+G G+ DL+ NA V AL+
Sbjct: 590 D-TIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 635
>UNIPROTKB|F1PLH3 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047 CTD:6734
GeneTree:ENSGT00550000074936 EMBL:AAEX03003376 EMBL:AAEX03003378
EMBL:AAEX03003377 EMBL:AAEX03003379 RefSeq:XP_546411.3
Ensembl:ENSCAFT00000016629 GeneID:489293 KEGG:cfa:489293
Uniprot:F1PLH3
Length = 638
Score = 201 (75.8 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 68/227 (29%), Positives = 106/227 (46%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI----LG--- 150
+P+V+ GVNGVGK+T + K++ + + SVL+AACDTFRA A EQL L
Sbjct: 417 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 476
Query: 151 ---KYNDVPVIS--EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELX 204
K+ ++ EK D + + D+V+VDT+GR+ + LM L
Sbjct: 477 PPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 536
Query: 205 XXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLIITKL 254
P + + + G + Q+ +F++ L I G+++TK
Sbjct: 537 KLITVNT------PDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKF 590
Query: 255 DGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
D T + AAI+ Y S P+ F+G G+ DL+ NA V AL+
Sbjct: 591 D-TIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>UNIPROTKB|F1S754 [details] [associations]
symbol:SRPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 GO:GO:0005047 GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:CU466237 EMBL:FP102836 EMBL:GACC01000039
Ensembl:ENSSSCT00000016593 Uniprot:F1S754
Length = 638
Score = 200 (75.5 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 66/227 (29%), Positives = 103/227 (45%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL-------- 149
+P+V+ GVNGVGK+T + K++ + + SVL+AACDTFRA A EQL
Sbjct: 417 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 476
Query: 150 -----GKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELX 204
G V + + D + + D+V+VDT+GR+ + LM L
Sbjct: 477 PPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 536
Query: 205 XXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLIITKL 254
P + + + G + Q+ +F++ L I G+++TK
Sbjct: 537 KLITVNT------PDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKF 590
Query: 255 DGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
D T + AAI+ Y S P+ F+G G+ DL+ NA V AL+
Sbjct: 591 D-TIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>UNIPROTKB|J9P788 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
GeneTree:ENSGT00550000074936 OMA:KEGSDGP EMBL:AAEX03003376
EMBL:AAEX03003378 EMBL:AAEX03003377 EMBL:AAEX03003379
Ensembl:ENSCAFT00000047935 Uniprot:J9P788
Length = 773
Score = 201 (75.8 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 68/227 (29%), Positives = 106/227 (46%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI----LG--- 150
+P+V+ GVNGVGK+T + K++ + + SVL+AACDTFRA A EQL L
Sbjct: 552 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 611
Query: 151 ---KYNDVPVIS--EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELX 204
K+ ++ EK D + + D+V+VDT+GR+ + LM L
Sbjct: 612 PPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 671
Query: 205 XXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLIITKL 254
P + + + G + Q+ +F++ L I G+++TK
Sbjct: 672 KLITVNT------PDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKF 725
Query: 255 DGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
D T + AAI+ Y S P+ F+G G+ DL+ NA V AL+
Sbjct: 726 D-TIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 771
>SGD|S000002700 [details] [associations]
symbol:SRP101 "Signal recognition particle (SRP) receptor
alpha subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005525
"GTP binding" evidence=IEA;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA;IC;TAS]
[GO:0005047 "signal recognition particle binding" evidence=ISS;IMP]
[GO:0005785 "signal recognition particle receptor complex"
evidence=TAS] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA;IDA] [GO:0045047 "protein targeting to ER"
evidence=IMP] [GO:0006810 "transport" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SGD:S000002700 GO:GO:0005525
EMBL:BK006938 GO:GO:0017111 SUPFAM:SSF64356 EMBL:U51031
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 RefSeq:NP_010578.3
GeneID:851886 KEGG:sce:YDR292C KO:K13431 RefSeq:NP_010582.3
GeneID:851890 KEGG:sce:YDR296W GO:GO:0005785 TCDB:3.A.5.8.1
GO:GO:0005047 PDB:1NRJ PDBsum:1NRJ HOGENOM:HOG000201671
GeneTree:ENSGT00550000074936 OrthoDB:EOG42Z7ZQ EMBL:M77274
PIR:S70121 ProteinModelPortal:P32916 SMR:P32916 DIP:DIP-1672N
IntAct:P32916 MINT:MINT-364995 STRING:P32916 PaxDb:P32916
PeptideAtlas:P32916 EnsemblFungi:YDR292C CYGD:YDR292c OMA:HVENLAQ
EvolutionaryTrace:P32916 NextBio:969862 Genevestigator:P32916
GermOnline:YDR292C InterPro:IPR015284 Pfam:PF09201 Uniprot:P32916
Length = 621
Score = 151 (58.2 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148
KC P+V IVGVNGVGK+T + KLA + + VL+ ACDTFR+ A EQL +
Sbjct: 394 KCDPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRV 446
Score = 104 (41.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 36/128 (28%), Positives = 61/128 (47%)
Query: 180 KNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKE 239
+N DIV++DT+GR LM L P +I ++ + G +++ Q K
Sbjct: 502 QNFDIVLMDTAGRRHNDPTLMSPLKSFADQAK------PDKIIMVGEALVGTDSVQQAKN 555
Query: 240 FS----KILRITGLIITKLDGTTKGGILAAIAKK-YS--IPLYFIGIGEKIEDLQIFNAV 292
F+ K + II+K D T G +L + Y+ IP+ F+G+G+ DL+ +
Sbjct: 556 FNDAFGKGRNLDFFIISKCD--TVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613
Query: 293 DFVNALLN 300
VN L++
Sbjct: 614 WAVNTLMS 621
>UNIPROTKB|P06625 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0005789
"endoplasmic reticulum membrane" evidence=TAS] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005789 GO:GO:0003924
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 Reactome:REACT_146484 GO:GO:0005047
HOGENOM:HOG000201671 HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP
EMBL:X03184 PIR:A24570 ProteinModelPortal:P06625 SMR:P06625
STRING:P06625 PRIDE:P06625 InParanoid:P06625 Uniprot:P06625
Length = 638
Score = 196 (74.1 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 67/227 (29%), Positives = 106/227 (46%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-------QLLILG 150
+P+V+ GVNGVGK+T + K++ + + SVL+AACDTFRA A E +L L
Sbjct: 417 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEHVRTHTRRLSALH 476
Query: 151 ---KYNDVPVIS--EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELX 204
K+ ++ EK D + + D+V+VDT+GR+ + LM L
Sbjct: 477 PPEKHAGPTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 536
Query: 205 XXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLIITKL 254
P + + + G + Q+ +F++ L I G+++TK
Sbjct: 537 KLITVNT------PDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKF 590
Query: 255 DGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
D T + AAI+ Y S P+ F+G G+ DL+ NA V AL+
Sbjct: 591 D-TIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>UNIPROTKB|Q3V8C7 [details] [associations]
symbol:flhF "Flagellar biogenesis protein FlhF"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0043064
GO:GO:0006614 KO:K02404 HOGENOM:HOG000254735 RefSeq:NP_954097.2
ProteinModelPortal:Q3V8C7 GeneID:2686907 KEGG:gsu:GSU3055
PATRIC:22028961 OMA:YRNELLV ProtClustDB:CLSK829079
BioCyc:GSUL243231:GH27-2995-MONOMER TIGRFAMs:TIGR03499
Uniprot:Q3V8C7
Length = 451
Score = 191 (72.3 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 61/200 (30%), Positives = 91/200 (45%)
Query: 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK-KSVLLAACDTFRAAAYEQLLIL 149
PL KK P +I +VG GVGKTTTI KLA ++ R+ L D FR A EQL
Sbjct: 248 PLTVKKNGPRIIALVGPTGVGKTTTIAKLAAHYALREGHRAALITIDNFRVGAVEQLKTY 307
Query: 150 GKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXX 209
+ VPV E T + +++++DT+GR S + EL
Sbjct: 308 SRIMGVPV--EVAAT----AAELEAAIELHSDKELILIDTAGRSHKDSEKIEELKGFLES 361
Query: 210 XXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK 269
F + EI L + T + +I E +L ++ +I TKLD + G + +
Sbjct: 362 R----FAI--EIHLCLAATTRDREVLEIVERFGVLSVSRVIFTKLDESESYGSIVNAHLR 415
Query: 270 YSIPLYFIGIGEKI-EDLQI 288
PL + G+++ EDL+I
Sbjct: 416 TKFPLSYFTTGQRVPEDLEI 435
>TIGR_CMR|GSU_3055 [details] [associations]
symbol:GSU_3055 "flagellar biosynthetic protein FlhF,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0001539
"ciliary or flagellar motility" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0009288 "bacterial-type
flagellum" evidence=ISS] [GO:0009296 "flagellum assembly"
evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR020006 Pfam:PF00448 SMART:SM00382 SMART:SM00962
GO:GO:0005525 GO:GO:0005886 GO:GO:0019861 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0043064 GO:GO:0006614
KO:K02404 HOGENOM:HOG000254735 RefSeq:NP_954097.2
ProteinModelPortal:Q3V8C7 GeneID:2686907 KEGG:gsu:GSU3055
PATRIC:22028961 OMA:YRNELLV ProtClustDB:CLSK829079
BioCyc:GSUL243231:GH27-2995-MONOMER TIGRFAMs:TIGR03499
Uniprot:Q3V8C7
Length = 451
Score = 191 (72.3 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 61/200 (30%), Positives = 91/200 (45%)
Query: 91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK-KSVLLAACDTFRAAAYEQLLIL 149
PL KK P +I +VG GVGKTTTI KLA ++ R+ L D FR A EQL
Sbjct: 248 PLTVKKNGPRIIALVGPTGVGKTTTIAKLAAHYALREGHRAALITIDNFRVGAVEQLKTY 307
Query: 150 GKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXX 209
+ VPV E T + +++++DT+GR S + EL
Sbjct: 308 SRIMGVPV--EVAAT----AAELEAAIELHSDKELILIDTAGRSHKDSEKIEELKGFLES 361
Query: 210 XXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK 269
F + EI L + T + +I E +L ++ +I TKLD + G + +
Sbjct: 362 R----FAI--EIHLCLAATTRDREVLEIVERFGVLSVSRVIFTKLDESESYGSIVNAHLR 415
Query: 270 YSIPLYFIGIGEKI-EDLQI 288
PL + G+++ EDL+I
Sbjct: 416 TKFPLSYFTTGQRVPEDLEI 435
>UNIPROTKB|Q485K6 [details] [associations]
symbol:flhF "Flagellar biosynthetic protein FlhF"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0003924 "GTPase activity"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
GO:GO:0003924 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
RefSeq:YP_268259.1 ProteinModelPortal:Q485K6 STRING:Q485K6
GeneID:3520893 KEGG:cps:CPS_1517 PATRIC:21466241 OMA:EPRQAWR
BioCyc:CPSY167879:GI48-1598-MONOMER Uniprot:Q485K6
Length = 513
Score = 184 (69.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 58/199 (29%), Positives = 94/199 (47%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKS--VLLAACDTFRAAAYEQLLILGKYNDVPVI 158
V+ +VG GVGKTTTI KLA F + S V L + DTFR A +EQL GK V
Sbjct: 298 VVALVGPTGVGKTTTIAKLAAGFSQVHGSDQVALISTDTFRIAGFEQLATYGKIIGCQVS 357
Query: 159 SEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELP 218
K D +KK ++++DT+G L +L +
Sbjct: 358 LAK---DSQALDILLQQYSKKK---LILIDTAGMGQRDMRLAEQLTALVSNA-----RVR 406
Query: 219 YEIFLIIDGNTGQNTLSQ-IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFI 277
+L++ NT Q + + + F K+ ++G I TKLD + G + + + +P+ ++
Sbjct: 407 IRNYLVLAANTQQGVMQENVDRFKKV-PLSGCIYTKLDESISIGEIITTSIQNGLPIGYL 465
Query: 278 GIGEKI-EDLQIFNAVDFV 295
G+++ ED+++ NA V
Sbjct: 466 TDGQRVPEDIKVANAEKLV 484
>TIGR_CMR|CPS_1517 [details] [associations]
symbol:CPS_1517 "flagellar biosynthetic protein FlhF"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0003924 "GTPase activity"
evidence=ISS] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 GO:GO:0003924 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009296 GO:GO:0001539 GO:GO:0006614
eggNOG:COG1419 KO:K02404 HOGENOM:HOG000254735 ProtClustDB:PRK05703
TIGRFAMs:TIGR03499 RefSeq:YP_268259.1 ProteinModelPortal:Q485K6
STRING:Q485K6 GeneID:3520893 KEGG:cps:CPS_1517 PATRIC:21466241
OMA:EPRQAWR BioCyc:CPSY167879:GI48-1598-MONOMER Uniprot:Q485K6
Length = 513
Score = 184 (69.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 58/199 (29%), Positives = 94/199 (47%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKS--VLLAACDTFRAAAYEQLLILGKYNDVPVI 158
V+ +VG GVGKTTTI KLA F + S V L + DTFR A +EQL GK V
Sbjct: 298 VVALVGPTGVGKTTTIAKLAAGFSQVHGSDQVALISTDTFRIAGFEQLATYGKIIGCQVS 357
Query: 159 SEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELP 218
K D +KK ++++DT+G L +L +
Sbjct: 358 LAK---DSQALDILLQQYSKKK---LILIDTAGMGQRDMRLAEQLTALVSNA-----RVR 406
Query: 219 YEIFLIIDGNTGQNTLSQ-IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFI 277
+L++ NT Q + + + F K+ ++G I TKLD + G + + + +P+ ++
Sbjct: 407 IRNYLVLAANTQQGVMQENVDRFKKV-PLSGCIYTKLDESISIGEIITTSIQNGLPIGYL 465
Query: 278 GIGEKI-EDLQIFNAVDFV 295
G+++ ED+++ NA V
Sbjct: 466 TDGQRVPEDIKVANAEKLV 484
>UNIPROTKB|Q8ECD1 [details] [associations]
symbol:flhF "Flagellar polar localization control system
flagellar assembly determinant GTPase FlhF" species:211586
"Shewanella oneidensis MR-1" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0009296 GO:GO:0001539 GO:GO:0006614 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:NP_718767.1 ProteinModelPortal:Q8ECD1
GeneID:1170905 KEGG:son:SO_3212 PATRIC:23526108 Uniprot:Q8ECD1
Length = 458
Score = 181 (68.8 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 56/194 (28%), Positives = 95/194 (48%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKS--VLLAACDTFRAAAYEQLLILGKYNDVPVI 158
V+ +VG GVGKTT++ KLA F + V L D +R AYEQL GK PV
Sbjct: 243 VVALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPV- 301
Query: 159 SEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELP 218
K+ D Q +N +V++DT+G L ++L +P
Sbjct: 302 --KQAHD---LAELEQILYQFRNRKLVLIDTAGMGQRDMRLYQQLDNLTANS-----RIP 351
Query: 219 YEIFLIIDGNTGQNTLSQ--IKEFSKILRITGLIITKLDGTTK-GGILAAIAKKYSIPLY 275
+L++ TGQ + Q + F +I ++G+++TKLD + G L+ + + +PL
Sbjct: 352 IRSYLVLSA-TGQRRVLQDAVNHFKRI-PLSGVVLTKLDESVSLAGALSVLIQS-GLPLS 408
Query: 276 FIGIGEKI-EDLQI 288
++ G+++ ED+++
Sbjct: 409 YVTDGQRVPEDMKV 422
>TIGR_CMR|SO_3212 [details] [associations]
symbol:SO_3212 "flagellar biosynthetic protein FlhF"
species:211586 "Shewanella oneidensis MR-1" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0009296 GO:GO:0001539 GO:GO:0006614 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:NP_718767.1 ProteinModelPortal:Q8ECD1
GeneID:1170905 KEGG:son:SO_3212 PATRIC:23526108 Uniprot:Q8ECD1
Length = 458
Score = 181 (68.8 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 56/194 (28%), Positives = 95/194 (48%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKS--VLLAACDTFRAAAYEQLLILGKYNDVPVI 158
V+ +VG GVGKTT++ KLA F + V L D +R AYEQL GK PV
Sbjct: 243 VVALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPV- 301
Query: 159 SEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELP 218
K+ D Q +N +V++DT+G L ++L +P
Sbjct: 302 --KQAHD---LAELEQILYQFRNRKLVLIDTAGMGQRDMRLYQQLDNLTANS-----RIP 351
Query: 219 YEIFLIIDGNTGQNTLSQ--IKEFSKILRITGLIITKLDGTTK-GGILAAIAKKYSIPLY 275
+L++ TGQ + Q + F +I ++G+++TKLD + G L+ + + +PL
Sbjct: 352 IRSYLVLSA-TGQRRVLQDAVNHFKRI-PLSGVVLTKLDESVSLAGALSVLIQS-GLPLS 408
Query: 276 FIGIGEKI-EDLQI 288
++ G+++ ED+++
Sbjct: 409 YVTDGQRVPEDMKV 422
>UNIPROTKB|Q48GG0 [details] [associations]
symbol:flhF "Flagellar biosynthesis protein FlhF"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009288 "bacterial-type flagellum" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0017111
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0009296 GO:GO:0001539
GO:GO:0009288 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:YP_275523.1 ProteinModelPortal:Q48GG0
STRING:Q48GG0 GeneID:3559389 KEGG:psp:PSPPH_3365 PATRIC:19976136
Uniprot:Q48GG0
Length = 442
Score = 168 (64.2 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 53/187 (28%), Positives = 89/187 (47%)
Query: 101 VIMIVGVNGVGKTTTIGKLA-NY-FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
VI +VG G+GKTTT+ KLA Y K +++ L + D+FR A EQL LG+ +VPV
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283
Query: 159 SEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELP 218
DP +K +V++DT+G ++ L +L +
Sbjct: 284 H----VDPGQSLVQALEPLLRKR--VVLIDTAGLQASDPALRMQLESLAGRG------IK 331
Query: 219 YEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIG 278
+L++ + + L+ K + G I+TKLD T G + ++A + +P+ ++
Sbjct: 332 SRNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYLT 391
Query: 279 IGEKIED 285
G +I D
Sbjct: 392 DGPRIPD 398
>UNIPROTKB|Q9KQD2 [details] [associations]
symbol:VC_2068 "Flagellar biosynthetic protein FlhF,
putative" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 HSSP:P83749 KO:K02404
ProtClustDB:PRK05703 TIGRFAMs:TIGR03499 PIR:F82123
RefSeq:NP_231700.1 ProteinModelPortal:Q9KQD2 DNASU:2613448
GeneID:2613448 KEGG:vch:VC2068 PATRIC:20083171 OMA:LCARIHG
Uniprot:Q9KQD2
Length = 495
Score = 166 (63.5 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 50/191 (26%), Positives = 87/191 (45%)
Query: 101 VIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
V+ ++G GVGKTTT+ KLA + +V L DT+R A+EQL I G+ PV
Sbjct: 284 VVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVR 343
Query: 159 SEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELP 218
K + Q +N +++VDT+G L +L
Sbjct: 344 VAKDSNE------LADVIYQLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHS-- 395
Query: 219 YEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIG 278
+L++ + L + E + + ++G I+TKLD G ++ + ++P+ +I
Sbjct: 396 ---YLVLPATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIA 452
Query: 279 IGEKI-EDLQI 288
G+++ ED+ I
Sbjct: 453 NGQRVPEDIVI 463
>TIGR_CMR|VC_2068 [details] [associations]
symbol:VC_2068 "flagellar biosynthetic protein FlhF,
putative" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 HSSP:P83749 KO:K02404
ProtClustDB:PRK05703 TIGRFAMs:TIGR03499 PIR:F82123
RefSeq:NP_231700.1 ProteinModelPortal:Q9KQD2 DNASU:2613448
GeneID:2613448 KEGG:vch:VC2068 PATRIC:20083171 OMA:LCARIHG
Uniprot:Q9KQD2
Length = 495
Score = 166 (63.5 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 50/191 (26%), Positives = 87/191 (45%)
Query: 101 VIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
V+ ++G GVGKTTT+ KLA + +V L DT+R A+EQL I G+ PV
Sbjct: 284 VVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVR 343
Query: 159 SEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELP 218
K + Q +N +++VDT+G L +L
Sbjct: 344 VAKDSNE------LADVIYQLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHS-- 395
Query: 219 YEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIG 278
+L++ + L + E + + ++G I+TKLD G ++ + ++P+ +I
Sbjct: 396 ---YLVLPATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIA 452
Query: 279 IGEKI-EDLQI 288
G+++ ED+ I
Sbjct: 453 NGQRVPEDIVI 463
>ZFIN|ZDB-GENE-030219-11 [details] [associations]
symbol:srpr "signal recognition particle receptor
(docking protein)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
ZFIN:ZDB-GENE-030219-11 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
CTD:6734 GeneTree:ENSGT00550000074936 EMBL:CU469519 IPI:IPI00799782
RefSeq:XP_697518.3 UniGene:Dr.79180 Ensembl:ENSDART00000086823
GeneID:569063 KEGG:dre:569063 NextBio:20889487 Uniprot:E7EZW6
Length = 650
Score = 162 (62.1 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 48/160 (30%), Positives = 74/160 (46%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI----LG--- 150
KPFVI GVNGVGK+T + K++ + + +VL+AACDTFRA A EQL L
Sbjct: 429 KPFVITFCGVNGVGKSTNLAKISYWLIENGFTVLIAACDTFRAGAVEQLRTHQRRLNSLH 488
Query: 151 ---KYNDVPVIS--EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELX 204
K+ P + EK D + + D+V++DT+GR+ + LM L
Sbjct: 489 PPEKHGGQPAVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLIDTAGRMQDNAPLMTALA 548
Query: 205 XXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKIL 244
P + + + G + Q+ +F++ L
Sbjct: 549 KLIAVNT------PDLVLFVGEALVGNEAVDQLVKFNRAL 582
>UNIPROTKB|Q722L6 [details] [associations]
symbol:LMOf2365_0717 "Putative flagellar biosynthesis
protein FlhF" species:265669 "Listeria monocytogenes serotype 4b
str. F2365" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000897 InterPro:IPR020006 Pfam:PF00448 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0043064 GO:GO:0006614 eggNOG:COG1419 KO:K02404
TIGRFAMs:TIGR03499 RefSeq:YP_013321.1 ProteinModelPortal:Q722L6
STRING:Q722L6 GeneID:2797398 KEGG:lmf:LMOf2365_0717 PATRIC:20322642
HOGENOM:HOG000254016 OMA:QFHGKKK ProtClustDB:PRK12726
Uniprot:Q722L6
Length = 407
Score = 156 (60.0 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 51/189 (26%), Positives = 84/189 (44%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160
+I ++G GVGKTTT+ KL K+ ++V DTFR+ A EQ DV +I
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA 267
Query: 161 KKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYE 220
T P D +++DT GR ++L E
Sbjct: 268 ---TSPAELEEAVQYMTYVNCVDHILIDTVGR----NYLAEE-SVSEISAYTDVVHPDLT 319
Query: 221 IFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIG 280
F G + ++ + + ++I I G IITK+D TT+ G L + ++ ++P+ ++ G
Sbjct: 320 CFTFSSGMKSADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDG 378
Query: 281 EKIEDLQIF 289
+ I + IF
Sbjct: 379 QNITE-NIF 386
>UNIPROTKB|Q81SE2 [details] [associations]
symbol:BA_1718 "Putative flagellar biosynthetic protein
FlhF" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 GO:GO:0005525 GO:GO:0019861 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0017111 GO:GO:0006614 KO:K02404
RefSeq:NP_844153.1 ProteinModelPortal:Q81SE2 DNASU:1086348
EnsemblBacteria:EBBACT00000010753 GeneID:1086348 KEGG:ban:BA_1718
PATRIC:18781034 HOGENOM:HOG000133114 ProtClustDB:PRK06731
Uniprot:Q81SE2
Length = 270
Score = 149 (57.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 51/208 (24%), Positives = 87/208 (41%)
Query: 93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY 152
+F+K + I ++G GVGKTTT+ K+A F +KK+V D R +QL K
Sbjct: 70 VFEK-EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT 128
Query: 153 NDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXX 212
VI+ + D ++ D +++DT+G+ S + E+
Sbjct: 129 IGFEVIA---VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE- 184
Query: 213 XXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI 272
P I L + + + +I K + I G++ TK D T G L I S
Sbjct: 185 -----PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSA 239
Query: 273 PLYFIGIGEKIE-DLQIFNAVDFVNALL 299
P+ + G+ ++ ++ I A +L
Sbjct: 240 PIVLMTDGQDVKKNIHIATAEHLAKQML 267
>TIGR_CMR|BA_1718 [details] [associations]
symbol:BA_1718 "flagellar biosynthetic protein FlhF,
putative" species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 GO:GO:0005525 GO:GO:0019861 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0017111 GO:GO:0006614 KO:K02404
RefSeq:NP_844153.1 ProteinModelPortal:Q81SE2 DNASU:1086348
EnsemblBacteria:EBBACT00000010753 GeneID:1086348 KEGG:ban:BA_1718
PATRIC:18781034 HOGENOM:HOG000133114 ProtClustDB:PRK06731
Uniprot:Q81SE2
Length = 270
Score = 149 (57.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 51/208 (24%), Positives = 87/208 (41%)
Query: 93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY 152
+F+K + I ++G GVGKTTT+ K+A F +KK+V D R +QL K
Sbjct: 70 VFEK-EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT 128
Query: 153 NDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXX 212
VI+ + D ++ D +++DT+G+ S + E+
Sbjct: 129 IGFEVIA---VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE- 184
Query: 213 XXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI 272
P I L + + + +I K + I G++ TK D T G L I S
Sbjct: 185 -----PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSA 239
Query: 273 PLYFIGIGEKIE-DLQIFNAVDFVNALL 299
P+ + G+ ++ ++ I A +L
Sbjct: 240 PIVLMTDGQDVKKNIHIATAEHLAKQML 267
>UNIPROTKB|F1MNJ2 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9913 "Bos taurus" [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 GO:GO:0005047 IPI:IPI00695733
GeneTree:ENSGT00550000074936 OMA:KEGSDGP EMBL:DAAA02063109
Ensembl:ENSBTAT00000018762 Uniprot:F1MNJ2
Length = 598
Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 51/181 (28%), Positives = 82/181 (45%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI----LG--- 150
+P+V+ GVNGVGK+T + K++ + + SVL+AACDTFRA A EQL L
Sbjct: 418 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALH 477
Query: 151 ---KYNDVPVIS--EKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELX 204
K+ ++ EK D + + D+V+VDT+GR+ + LM L
Sbjct: 478 PPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 537
Query: 205 XXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILR----------ITGLIITKL 254
P + + + G + Q+ +F++ L I G+++TK
Sbjct: 538 KLITVNT------PDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKF 591
Query: 255 D 255
D
Sbjct: 592 D 592
>FB|FBgn0010391 [details] [associations]
symbol:Gtp-bp "GTP-binding protein" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=IDA] [GO:0007409
"axonogenesis" evidence=IEP] [GO:0050708 "regulation of protein
secretion" evidence=IEP] [GO:0005785 "signal recognition particle
receptor complex" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IEA;NAS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005811 "lipid particle" evidence=IDA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005789 GO:GO:0005811 EMBL:AE014298
GO:GO:0003924 GO:GO:0003723 GO:GO:0007409 GO:GO:0050708
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 OMA:LILWSSC EMBL:AY061329
EMBL:S65640 RefSeq:NP_524887.2 UniGene:Dm.129
ProteinModelPortal:Q9U5L1 SMR:Q9U5L1 IntAct:Q9U5L1 MINT:MINT-765133
STRING:Q9U5L1 PaxDb:Q9U5L1 EnsemblMetazoa:FBtr0073480 GeneID:47251
KEGG:dme:Dmel_CG2522 CTD:47251 FlyBase:FBgn0010391
GeneTree:ENSGT00550000074936 InParanoid:Q9U5L1 OrthoDB:EOG4W0VV7
PhylomeDB:Q9U5L1 GenomeRNAi:47251 NextBio:838983 Bgee:Q9U5L1
GermOnline:CG2522 Uniprot:Q9U5L1
Length = 614
Score = 148 (57.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 39/119 (32%), Positives = 57/119 (47%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY----- 152
+P+ I+ GVNGVGK+T + K+ + + +VL+AACDTFRA A EQL ++
Sbjct: 394 RPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALH 453
Query: 153 --------NDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMREL 203
N V + + D D+V+VDT+GR+ LMR L
Sbjct: 454 PAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSL 512
>TAIR|locus:2158103 [details] [associations]
symbol:AT5G66970 species:3702 "Arabidopsis thaliana"
[GO:0005525 "GTP binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR013822
Pfam:PF00448 GO:GO:0005525 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006614 SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106
EMBL:DQ447113 IPI:IPI00530911 RefSeq:NP_201498.2 UniGene:At.55720
ProteinModelPortal:Q1PDF5 SMR:Q1PDF5 STRING:Q1PDF5
EnsemblPlants:AT5G66970.1 GeneID:836831 KEGG:ath:AT5G66970
TAIR:At5g66970 HOGENOM:HOG000124785 InParanoid:Q1PDF5 OMA:YARYHRK
PhylomeDB:Q1PDF5 ProtClustDB:CLSN2702272 ArrayExpress:Q1PDF5
Genevestigator:Q1PDF5 Uniprot:Q1PDF5
Length = 175
Score = 106 (42.4 bits), Expect = 0.00049, P = 0.00049
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGK 151
LI K +P ++M +G+ GV KT T K A Y +K+ L DTF+ A+ +L K
Sbjct: 92 LIRGKLEPSIVMFIGLRGVDKTKTCAKYARYHRKKGFRPALVCADTFKFDAFVRLNKAAK 151
Query: 152 YNDVPV 157
++VPV
Sbjct: 152 -DEVPV 156
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.138 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 302 267 0.00095 114 3 11 22 0.48 33
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 91
No. of states in DFA: 585 (62 KB)
Total size of DFA: 159 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.48u 0.15s 20.63t Elapsed: 00:00:01
Total cpu time: 20.49u 0.15s 20.64t Elapsed: 00:00:01
Start: Thu Aug 15 14:40:54 2013 End: Thu Aug 15 14:40:55 2013