RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2881
(302 letters)
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 419 bits (1079), Expect = e-146
Identities = 146/304 (48%), Positives = 209/304 (68%), Gaps = 4/304 (1%)
Query: 2 KINWITRLKESLSKTACNL----KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
K + RLK SL KT NL SL KKID +L+ ELE LL ADVG ETT+ ++
Sbjct: 192 KEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITN 251
Query: 58 LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
L + K+L + E + +L + +L +++PL + PFVI++VGVNGVGKTTTIG
Sbjct: 252 LTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIG 311
Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177
KLA F+++ KSV+LAA DTFRAAA EQL + G+ N++PVI++ D A++ F+AI A
Sbjct: 312 KLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371
Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI 237
+ +N D++I DT+GRL +SHLM ELKKI +V++K E P+E+ L ID +TGQN +SQ
Sbjct: 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA 431
Query: 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNA 297
K F + + +TG+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ A
Sbjct: 432 KLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEA 491
Query: 298 LLNQ 301
L +
Sbjct: 492 LFAR 495
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 382 bits (984), Expect = e-134
Identities = 122/307 (39%), Positives = 177/307 (57%), Gaps = 19/307 (6%)
Query: 5 WITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYS 64
+ RLK L+KT L I + + ELE LL ADVG T+ +L E++
Sbjct: 3 FFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALLAADVGLSATEEILQEVRASG-- 60
Query: 65 KKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKC------------KPFVIMIVGVNGVGK 112
+ ++ + LV +L+ E+ +K K V+++VGVNGVGK
Sbjct: 61 -----RKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGK 115
Query: 113 TTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFN 172
TTTI KL Y++ K V+ A DTFRAA QL GK +PVI + TD AA+A++
Sbjct: 116 TTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYD 175
Query: 173 AINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQN 232
A+ + + D++ VDT+GRL T+ +LM ELKK+K+ I K E P E++L++D TGQN
Sbjct: 176 AVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN 235
Query: 233 TLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAV 292
L Q K+F + + +TG+I+TKLDGT KGG+L I + +P+ F+G+GE +DLQ F+
Sbjct: 236 GLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPE 295
Query: 293 DFVNALL 299
FV ALL
Sbjct: 296 AFVEALL 302
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 383 bits (986), Expect = e-134
Identities = 119/307 (38%), Positives = 177/307 (57%), Gaps = 8/307 (2%)
Query: 2 KINWITRLKESLSKTACNLKS-----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLN 56
+ + ++ SKT NL L N + +ELE LL +D G + T ++
Sbjct: 53 AKSDVEKVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVE 112
Query: 57 ELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKP--LIFKKCKPFVIMIVGVNGVGKTT 114
L++ I S KL + ++++ L ++ +L L KP VIMIVGVNG GKTT
Sbjct: 113 RLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTT 172
Query: 115 TIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKITDPAAIAFNA 173
++GKLA+ K VL+AA DTFRAAA +QL I + V++E A + A
Sbjct: 173 SLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 232
Query: 174 INIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNT 233
+ +++ D+V+ DTSGRL T LM EL KK + K + P EI L++DGNTG N
Sbjct: 233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNM 292
Query: 234 LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVD 293
L Q +EF++++ ITGLI+TKLDG+ +GG + ++ ++ IP+ FIG+GE +EDLQ F+
Sbjct: 293 LPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEA 352
Query: 294 FVNALLN 300
FVNA+ +
Sbjct: 353 FVNAIFS 359
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 379 bits (977), Expect = e-133
Identities = 137/304 (45%), Positives = 189/304 (62%), Gaps = 13/304 (4%)
Query: 2 KINWITRLKESLSKT----ACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
+ LK+ L KT + L+ KK+D ELE L++ADVG ETT+++L
Sbjct: 12 HMGLFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILER 71
Query: 58 LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
L++ L +++ +L + L PFVIM+VGVNG GKTT+ G
Sbjct: 72 LEE--------KDGDALESLKEIILEILNF-DTKLNVPPEPPFVIMVVGVNGTGKTTSCG 122
Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177
KLA F KSV+LAA DTFRAAA EQL I G+ VIS + DPAA+AF+A+ A
Sbjct: 123 KLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182
Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI 237
+N D+VI+DT+GRL T+ +LM EL+K+ +V++KKI + P+E L+ID TGQN L Q
Sbjct: 183 LARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA 242
Query: 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNA 297
K F + + +TG+I+TKLDGT KGGI AIA++ IP+ FIG+GEK EDL+ F+ FV
Sbjct: 243 KIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEV 302
Query: 298 LLNQ 301
LL++
Sbjct: 303 LLSE 306
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 379 bits (975), Expect = e-133
Identities = 119/301 (39%), Positives = 175/301 (58%), Gaps = 8/301 (2%)
Query: 8 RLKESLSKTACNLKS-----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKII 62
++ SKT NL L N + +ELE LL +D G + T ++ L++ I
Sbjct: 2 KVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDI 61
Query: 63 YSKKLFNTEQVRNVLHNLLVNLLKSLEKP--LIFKKCKPFVIMIVGVNGVGKTTTIGKLA 120
S KL + ++++ L ++ +L L KP VIMIVGVNG GKTT++GKLA
Sbjct: 62 MSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLA 121
Query: 121 NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKITDPAAIAFNAINIAQK 179
+ K VL+AA DTFRAAA +QL I + V++E A + A+ ++
Sbjct: 122 HRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE 181
Query: 180 KNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKE 239
+ D+V+ DTSGRL T LM EL KK + K + P EI L++DGNTG N L Q +E
Sbjct: 182 EGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQARE 241
Query: 240 FSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
F++++ ITGLI+TKLDG+ +GG + ++ ++ IP+ FIG+GE +EDLQ F+ FVNA+
Sbjct: 242 FNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 301
Query: 300 N 300
+
Sbjct: 302 S 302
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 363 bits (934), Expect = e-126
Identities = 107/310 (34%), Positives = 183/310 (59%), Gaps = 16/310 (5%)
Query: 4 NWITRLKESLSKTACNLKSLIVN-----KKIDKNLYNELESDLLKADVGFETTQFLLNEL 58
+ +++++ K+A N I K+ D + ELE L++ D+G + + N +
Sbjct: 2 HHHHPMEKAMLKSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLKVSNLV 61
Query: 59 KKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEK-----PLIFKKCKPFVIMIVGVNGVGKT 113
+K + E +++ L L + + FK+ + + M+VGVNG GKT
Sbjct: 62 RKKTKRDT--SFENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKT 119
Query: 114 TTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY---NDVPVISEKKI-TDPAAI 169
T++ K+ANY+ + VL+AA DTFRA A +QL K N V ++ K+ DPA++
Sbjct: 120 TSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASV 179
Query: 170 AFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNT 229
F+AI A+++N D++++DT+GRL +++LM EL+K+ K+I++ P+E+ L+ID T
Sbjct: 180 VFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT 239
Query: 230 GQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIF 289
GQN + Q +EFSK+ ++G+I+TK+D T+KGGI AI + +IP+ IG+GEK++DL F
Sbjct: 240 GQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 299
Query: 290 NAVDFVNALL 299
+ ++ L
Sbjct: 300 DIDQYIVHLS 309
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 350 bits (899), Expect = e-121
Identities = 102/318 (32%), Positives = 166/318 (52%), Gaps = 23/318 (7%)
Query: 2 KINWITRLKESLSKTACN---------LKSLIVNKKIDKNLYNELESDLLKADVGFETTQ 52
+++ R++E + K + ++ + +K +ELE DLL+ADV E
Sbjct: 15 LKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVD 74
Query: 53 FLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKP--------LIFKKCKPFVIMI 104
L ++K+ + KK+ ++ + + + + I K KP+VIM
Sbjct: 75 ALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMF 134
Query: 105 VGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKIT 164
VG NG GKTTTI KLAN+ K SV++AA DTFRA A EQL K V VI
Sbjct: 135 VGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA 194
Query: 165 DPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224
DPAA+A++AI A+ + D+V++DT+GR T +LM E+KKI +V + P + +
Sbjct: 195 DPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTK------PNLVIFV 248
Query: 225 IDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIE 284
D G + Q ++F++ ++I G+I+TKLD +GG +I+ P+ F+G+G+ +
Sbjct: 249 GDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYD 308
Query: 285 DLQIFNAVDFVNALLNQN 302
DL+ F F+ + +
Sbjct: 309 DLRPFEKEWFLERIFGEE 326
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 281 bits (721), Expect = 6e-95
Identities = 64/298 (21%), Positives = 110/298 (36%), Gaps = 20/298 (6%)
Query: 8 RLKESLSKTACNLKSLI----VNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIY 63
+++E + + + + + E L + + T L +L +
Sbjct: 12 KIEERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSV 71
Query: 64 SKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN-Y 122
E V L +L ++L S +K I++ G G GKTTT+ KLA
Sbjct: 72 EAGGLTEENVVGKLQEILCDMLPSADKWQEPIH--SKYIVLFGSTGAGKTTTLAKLAAIS 129
Query: 123 FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNT 182
++ K + DT+R AA EQL + P+ +
Sbjct: 130 MLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQA------KELFSEY 183
Query: 183 DIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSK 242
D V VDT+GR + ELK+ + FL++ + I +
Sbjct: 184 DHVFVDTAGRNFKDPQYIDELKETIPFES------SIQSFLVLSATAKYEDMKHIVKRFS 237
Query: 243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALL 299
+ + I TK+D TT G + I + I + F+ G+ + ED+Q + + FV L
Sbjct: 238 SVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLC 295
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 228 bits (585), Expect = 3e-74
Identities = 92/261 (35%), Positives = 140/261 (53%), Gaps = 24/261 (9%)
Query: 41 LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
L+ ADV + L N++K+ + ++K E ++++ L NL ++P +
Sbjct: 36 LISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPD 95
Query: 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
P+VIM+VGV G GKTTT GKLA ++KK+ V L D +R AA EQL LG+ VP
Sbjct: 96 KIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVP 155
Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLS--TQSHLMRELKKIKKVIEKKI 214
V E D IA + + +I+IVDT+GR ++ L+ E+K I + I+
Sbjct: 156 VYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIK--- 212
Query: 215 FELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI-- 272
P E+ L+ID + GQ +F++ +I +IITK+DGT KGG A+ S
Sbjct: 213 ---PDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGG--GAL----SAVA 263
Query: 273 ----PLYFIGIGEKIEDLQIF 289
+ FIG GEKI++L++F
Sbjct: 264 ATGATIKFIGTGEKIDELEVF 284
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 232 bits (595), Expect = 2e-73
Identities = 83/259 (32%), Positives = 127/259 (49%), Gaps = 22/259 (8%)
Query: 41 LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
LL+ADV + + L +K I +++ + + +++ + LV L+ K K
Sbjct: 39 LLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTK 98
Query: 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
K VIM VG+ G GKTTT KLA Y++++ L DTFRA A++QL +P
Sbjct: 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIP 158
Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFE 216
DP IA + + +N +I+IVDTSGR + L E+ ++ I+
Sbjct: 159 FYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ----- 213
Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI---- 272
P I ++D + GQ +Q K F + + +I+TKLDG KGG A+ S
Sbjct: 214 -PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGG--GAL----SAVAAT 266
Query: 273 --PLYFIGIGEKIEDLQIF 289
P+ FIG GE I+D + F
Sbjct: 267 KSPIIFIGTGEHIDDFEPF 285
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 224 bits (574), Expect = 8e-71
Identities = 88/255 (34%), Positives = 136/255 (53%), Gaps = 15/255 (5%)
Query: 41 LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
L++ADV L E+++ +K E + +++ L L + KP+ K+
Sbjct: 39 LIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE 98
Query: 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
KP ++++VG+ G GKTTT+ KLA YF+KR V + DT+R AY QL L +
Sbjct: 99 -KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIE 157
Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFE 216
V + D +A ++ + K DI+IVDT+GR L+ E+K+I VI
Sbjct: 158 VFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIH----- 212
Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI--PL 274
P+E+ L+IDG GQ +Q F + I +I+TKLDG+ KGG A++ + P+
Sbjct: 213 -PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGG--GALSAVAATGAPI 269
Query: 275 YFIGIGEKIEDLQIF 289
FIG GEKI+D++ F
Sbjct: 270 KFIGTGEKIDDIEPF 284
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
{Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Length = 433
Score = 223 bits (572), Expect = 1e-70
Identities = 92/261 (35%), Positives = 140/261 (53%), Gaps = 24/261 (9%)
Query: 41 LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
L+ +DV + L ++K+ + +K + E +++++ L L ++P +
Sbjct: 35 LISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPT 94
Query: 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
PF+IM+VGV G GKTTT GKLA ++KKR V L A D +R AAY+QLL LG V
Sbjct: 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQ 154
Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLS--TQSHLMRELKKIKKVIEKKI 214
V E +P IA ++I K DI+IVDT+GR ++ L+ E+K++ V++
Sbjct: 155 VYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK--- 211
Query: 215 FELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI-- 272
P ++ L+ID + GQ F + I +IITK+DGT KGG A+ S
Sbjct: 212 ---PDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGG--GAL----SAVV 262
Query: 273 ----PLYFIGIGEKIEDLQIF 289
+ FIG GEKI++L+ F
Sbjct: 263 ATGATIKFIGTGEKIDELETF 283
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 212 bits (542), Expect = 8e-68
Identities = 87/259 (33%), Positives = 135/259 (52%), Gaps = 24/259 (9%)
Query: 41 LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
L+ ADV E + + +++ K++ + E + ++ L L + + K
Sbjct: 38 LMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKD 97
Query: 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
+ +VG+ G GKTTT KLA Y+K + + LL A DT R AA EQL +LG+ VP
Sbjct: 98 --RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 155
Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFE 216
V+ P +I A+ + D+++VDT+GRL LM EL ++K+V+
Sbjct: 156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG----- 210
Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI---- 272
P E+ L++D TGQ LS + F + + +TGL++TKLDG +GG AA+ S
Sbjct: 211 -PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AAL----SARHVT 263
Query: 273 --PLYFIGIGEKIEDLQIF 289
P+YF G+ EK E L+ F
Sbjct: 264 GKPIYFAGVSEKPEGLEPF 282
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 213 bits (544), Expect = 2e-66
Identities = 93/257 (36%), Positives = 134/257 (52%), Gaps = 18/257 (7%)
Query: 41 LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
L++ADV + + E+++ +K E + +++ LV LL K L
Sbjct: 37 LIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNP 96
Query: 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
K VI++VG+ G GKTTT KLA Y +KR L A DT+R AAYEQL L + VP
Sbjct: 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVP 156
Query: 157 VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIF 215
+ E + P I + K D++I+DT+GR + L+ E+K+IK++
Sbjct: 157 IYGDETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITN---- 210
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFS-KILRITGLIITKLDGTTKGGILAAIAKKYSI-- 272
P EI L+IDG GQ Q K F + I +I+TKLDG+ KGG A++
Sbjct: 211 --PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGG--GALSAVAETKA 266
Query: 273 PLYFIGIGEKIEDLQIF 289
P+ FIGIGE I+DL+ F
Sbjct: 267 PIKFIGIGEGIDDLEPF 283
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
2iy3_A
Length = 425
Score = 209 bits (534), Expect = 5e-65
Identities = 88/259 (33%), Positives = 136/259 (52%), Gaps = 24/259 (9%)
Query: 41 LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
L+ ADV E T+ + +++ K++ + E + ++ L L + + K
Sbjct: 38 LMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKD 97
Query: 97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
+ +VG+ G GKTTT KLA Y+K + + LL A DT R AA EQL +LG+ VP
Sbjct: 98 --RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 155
Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFE 216
V+ P +I A+ + D+++VDT+GRL LM EL ++K+V+
Sbjct: 156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG----- 210
Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI---- 272
P E+ L++D TGQ LS + F + + +TGL++TKLDG +GG AA+ S
Sbjct: 211 -PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AAL----SARHVT 263
Query: 273 --PLYFIGIGEKIEDLQIF 289
P+YF G+ EK E L+ F
Sbjct: 264 GKPIYFAGVSEKPEGLEPF 282
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA
binding protein, hydrolase, gtpas; HET: GCP; 3.94A
{Escherichia coli} PDB: 2j28_9
Length = 433
Score = 206 bits (526), Expect = 8e-64
Identities = 81/260 (31%), Positives = 135/260 (51%), Gaps = 23/260 (8%)
Query: 41 LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
LL+ADV + +N +K+ ++ + ++ ++ N LV + + L
Sbjct: 38 LLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAA 97
Query: 97 CKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDV 155
P V+++ G+ G GKTT++GKL + + K KK VL+ + D +R AA +QL L + V
Sbjct: 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV 157
Query: 156 PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIF 215
P I A+ A+ K D+++VDT+GRL +M E+K++ I
Sbjct: 158 DFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN---- 213
Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI--- 272
P E ++D TGQ+ + K F++ L +TG+++TK+DG +GG AA+ SI
Sbjct: 214 --PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGG--AAL----SIRHI 265
Query: 273 ---PLYFIGIGEKIEDLQIF 289
P+ F+G+GEK E L+ F
Sbjct: 266 TGKPIKFLGVGEKTEALEPF 285
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 1e-12
Identities = 62/385 (16%), Positives = 112/385 (29%), Gaps = 147/385 (38%)
Query: 9 LKESLSKTACN--------------LKSLIVNKKIDKNLYNELESDLLKADVGF------ 48
K LSK + L +++K+ + + + ++L+ + F
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIK 99
Query: 49 -ETTQFLLNELKKIIYSKKLFNTEQV---RNV----LHNLLVNLLKSLEKPLIFKKCKPF 100
E Q + I +L+N QV NV + L L L +P
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RP------AKN 152
Query: 101 VIMIVGVNGVGKTT----------------------TIGK----------LANYFKKRKK 128
V+ I GV G GKT + L +
Sbjct: 153 VL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 129 SVLLAACDT------------------FRAAAYEQ-LLILGKYNDVPVISEKKITDPAAI 169
+ + D ++ YE LL+L +V K +
Sbjct: 212 N-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNV---QNAKAWN---- 260
Query: 170 AFNA-----INIAQKKNTDIVIVDTSGRLSTQSHLM----RELKKI-KKVIEKKIFELPY 219
AFN + K+ TD + T+ +S H M E+K + K ++ + +LP
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 220 EI-------------FLIIDGNTGQNTL-SQIKEFSKILRITGLIITKLDGTTKGGILAA 265
E+ + T N + + I+ + + L+ A
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS---LNVLE--------PA 369
Query: 266 IAKKYSIPLYFIGIGEKIEDLQIFN 290
+K + + L +F
Sbjct: 370 EYRKM----F--------DRLSVFP 382
Score = 47.2 bits (111), Expect = 5e-06
Identities = 61/384 (15%), Positives = 121/384 (31%), Gaps = 114/384 (29%)
Query: 1 MKINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKA-DVG---FETTQ---- 52
++I+ I L K+ L+V + N+ N + A ++ TT+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLV---LL-NVQN---AKAWNAFNLSCKILLTTRFKQV 277
Query: 53 --FLLNELKKIIYSKKL---FNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGV 107
FL I ++V+++L L + L P P + I+
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAE 335
Query: 108 NGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA----AYEQLLILGKYNDVP--VIS-- 159
+ T + + +++ ++ + A +++L + +P ++S
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 160 --EKKITDPAAIA-----FNAINIAQKKNT----DI----------------VIVDT--- 189
+ +D + ++ + K++T I IVD
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 190 -----SGRLSTQ-------SHLMRELKKIKKVIEKKIFELPYEIF------LIIDGNTGQ 231
S L SH+ LK I+ +F + + F + D
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 232 ------NTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFI-GIGEKI- 283
NTL Q+K + I D + ++ AI L F+ I E +
Sbjct: 516 ASGSILNTLQQLKFYKP-------YICDNDPKYE-RLVNAI-------LDFLPKIEENLI 560
Query: 284 ----EDL-QIFNAVDFVNALLNQN 302
DL +I AL+ ++
Sbjct: 561 CSKYTDLLRI--------ALMAED 576
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 44.0 bits (103), Expect = 1e-05
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSV-LLAACDTFRAAAYEQLLILGKYN--DVPV 157
+ ++ G+ GVGK+T + K+ + + ++ D A A + + + V
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMREL 203
+KK+ AA A+ + +DT + T S + L
Sbjct: 63 EKQKKLQIDAAKGI--AEEARAGGEGYLFIDTHAVIRTPSGYLPGL 106
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 38.8 bits (90), Expect = 7e-04
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 12/117 (10%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160
+ +I G GVGK+TT +LA + S + D ++G Y E
Sbjct: 4 LYIITGPAGVGKSTTCKRLA---AQLDNSAYIEG-DIINHM------VVGGYRPPWESDE 53
Query: 161 KKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFEL 217
I +N +N V++D L + ++ +E + L
Sbjct: 54 LLALTWKNITDLTVNFLLAQND--VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIIL 108
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 38.9 bits (91), Expect = 9e-04
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 109 GVGKTTTIGKLANYFKKRKKSVLLAACD----TFRAAAYEQLLILGKYNDVPVISEKKIT 164
G GKTT + +A + ++ + D + + V +
Sbjct: 12 GSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGK-------AAFDVFTAASEK 64
Query: 165 DPAAIAFNAINIAQKKNTDIVIVDTSGRLST 195
D I + D IVD +G LS
Sbjct: 65 DVYGIR------KDLADYDFAIVDGAGSLSV 89
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 38.7 bits (90), Expect = 0.001
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 69 NTEQVRNVLHNLLVNLLKSLEKPLIFKKCKP--FVIMIVGVNGVGKTTTIGKLANYFKKR 126
+ + + LL +L + K KP F + + G G GK+T I +R
Sbjct: 42 THSRKKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTER 101
Query: 127 KKSVLLAACD 136
+ + A D
Sbjct: 102 GHKLSVLAVD 111
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 38.1 bits (88), Expect = 0.001
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF-RAAAYEQLLILGKYN--DVPV 157
V+++ GV GVG TT+ + +K + + + + A E+ L+ + +
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 64
Query: 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMREL 203
++K+I A IA+ V VDT +ST + L
Sbjct: 65 ETQKRIQKMAGRK-----IAEMAKESPVAVDTHSTVSTPKGYLPGL 105
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 38.9 bits (90), Expect = 0.001
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 15/132 (11%)
Query: 88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS-VLLAACDTFRAAAYEQL 146
+ K K + I G G G TT + ++ ++LAA T A
Sbjct: 34 FNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAA-PTHAAKK---- 88
Query: 147 LILGKYNDVPV------ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQ--SH 198
IL K + + +T + F + ++I D +
Sbjct: 89 -ILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKI 147
Query: 199 LMRELKKIKKVI 210
L+ + +I
Sbjct: 148 LLSTIPPWCTII 159
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 37.4 bits (87), Expect = 0.005
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 21/134 (15%)
Query: 29 IDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQ-VRNVLHNLLVNLLKS 87
+ +E L D + IY + E+ + +++ LL
Sbjct: 114 ARLAVETAVELGRLSEDDSPLFAAEAAATGEGRIYLPHVLRAEKKLASLIRTLLATPPAD 173
Query: 88 LEKPLIFKKCKPF-------------------VIMIVGVNGVGKTTTIGKLANYFKKRKK 128
+ K ++++ G G GK+TT +A+ +
Sbjct: 174 GAGNDDWAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGL 233
Query: 129 SVLLAACDTFRAAA 142
V L A T +AA
Sbjct: 234 EVGLCAP-TGKAAR 246
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 36.8 bits (84), Expect = 0.006
Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 10/154 (6%)
Query: 68 FNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK 127
+ + ++ L L +L + + +P I++ G +G GKTT F +
Sbjct: 6 YTDSEFKHALARNLRSLTRGKKSS-----KQPIAILLGGQSGAGKTTIHRIKQKEF--QG 58
Query: 128 KSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIV 187
V++ D+FR+ L + +Y E + + + +++I
Sbjct: 59 NIVIIDG-DSFRSQHPHYLELQQEYG--KDSVEYTKDFAGKMVESLVTKLSSLGYNLLIE 115
Query: 188 DTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEI 221
T + + LK ++ + E+
Sbjct: 116 GTLRTVDVPKKTAQLLKNKGYEVQLALIATKPEL 149
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 36.8 bits (85), Expect = 0.006
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
+ I GV GVGK+T I L + +R V + A D
Sbjct: 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 36.2 bits (84), Expect = 0.006
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138
K V+ I G++ GKTT +L+ +++ SV + D
Sbjct: 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 36.7 bits (84), Expect = 0.007
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 82 VNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF-KKRKKSVLLAACD 136
NL LEK + P ++IVG + GKT+ L +Y K L D
Sbjct: 122 YNLHFMLEKIRMSNFEGP-RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 36.7 bits (85), Expect = 0.007
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
+ + G G GK+T + + V + A D
Sbjct: 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 36.3 bits (84), Expect = 0.010
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
+ + I GV GVGK+TTI L + V + A D
Sbjct: 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 36.0 bits (83), Expect = 0.010
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 16/122 (13%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160
+I++ G+ GVGK+T LA K V++ D R + + + E
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES-------FPVWKE---KYE 55
Query: 161 KKITDPAAIAFNAINIAQKKNTDIVIVD-TSGRLSTQSHLMRELKKIKKVIEKKIFELPY 219
+ I + I+ A K VIVD T+ S + L+ KK K +
Sbjct: 56 EFIK---KSTYRLIDSALKN--YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASL 110
Query: 220 EI 221
++
Sbjct: 111 DV 112
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 34.9 bits (80), Expect = 0.016
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 97 CKPFVIMIVGVNGVGKTTTIGKLA 120
+ +I I G GVGKT T L
Sbjct: 3 MRSPIIWINGPFGVGKTHTAHTLH 26
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 34.8 bits (81), Expect = 0.018
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 106 GVNGVGKTTTIGKLANYFKKRKKSVLL 132
G++G GKTT KL Y K++ V L
Sbjct: 7 GIDGSGKTTQAKKLYEYLKQKGYFVSL 33
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 34.8 bits (81), Expect = 0.019
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 106 GVNGVGKTTTIGKLANYFKKRKKSVLL 132
G++G GK+T I LA Y +KR K V+L
Sbjct: 7 GIDGSGKSTQIQLLAQYLEKRGKKVIL 33
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 35.0 bits (80), Expect = 0.019
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138
K +I + G +G G +T F++ + D F
Sbjct: 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology;
HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB:
4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A*
Length = 213
Score = 34.5 bits (80), Expect = 0.025
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 106 GVNGVGKTTTIGKLANYFKKRKKSVLL 132
G G GK+T LA ++R V L
Sbjct: 13 GPEGAGKSTNRDYLAERLRERGIEVQL 39
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 34.3 bits (78), Expect = 0.028
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 11/114 (9%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYND-VP 156
++++ G G GK+T LAN K D + G+ + +P
Sbjct: 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHF---HSDDLW-----GYIKHGRIDPWLP 59
Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVI 210
++ A A A++ VI+D R + + ++
Sbjct: 60 QSHQQNRMIMQIAADVAGRYAKEGYF--VILDGVVRPDWLPAFTALARPLHYIV 111
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 34.3 bits (79), Expect = 0.029
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 20/96 (20%)
Query: 103 MIVGV-N---GVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
MI+ V + GVGKTTT L+ Y + + LL D R+A G V+
Sbjct: 1 MIITVASFKGGVGKTTTAVHLSAYLALQGE-TLLIDGDPNRSAT--GWGKRGSLPF-KVV 56
Query: 159 SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLS 194
E++ A +++DT R
Sbjct: 57 DERQAAKYAP------------KYQNIVIDTQARPE 80
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 33.9 bits (77), Expect = 0.030
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSV 130
V +VG GKTT + K + V
Sbjct: 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRV 35
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 33.8 bits (77), Expect = 0.033
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL 146
P +I++ G GKTT L+ + LL+ D F+ ++ L
Sbjct: 4 TPALIIVTGHPATGKTT----LSQALATGLRLPLLSK-DAFKEVMFDGL 47
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 33.9 bits (77), Expect = 0.034
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF 138
++ IVG + GKTT I ++ ++R V +
Sbjct: 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 34.2 bits (77), Expect = 0.039
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 14/156 (8%)
Query: 68 FNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK 127
F +Q N L++ L L++ + P ++ G G GKT+ + +
Sbjct: 7 FTDKQFENRLNDNLEELIQGKKAVE-----SPTAFLLGGQPGSGKTSLRSAIFEETQGNV 61
Query: 128 KSVLLAACDTFRAA--AYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIV 185
+ DTF+ +++L+ L + + V ++ + I+ + ++V
Sbjct: 62 IVI---DNDTFKQQHPNFDELVKLYEKDVVKHVTPYS----NRMTEAIISRLSDQGYNLV 114
Query: 186 IVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEI 221
I T L+ + + +P
Sbjct: 115 IEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKIN 150
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 33.5 bits (77), Expect = 0.043
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 76 VLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135
L L +L+ L+ ++ ++ + G G GK+T LA + +
Sbjct: 3 TLAALCQGVLERLDP----RQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58
Query: 136 DTF 138
D F
Sbjct: 59 DGF 61
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 33.9 bits (77), Expect = 0.049
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL---AACDTFRAAAYEQLLILGKYND 154
+++ VG G GKTT G+ Y + K + + +
Sbjct: 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEE 72
Query: 155 V 155
+
Sbjct: 73 I 73
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 33.2 bits (76), Expect = 0.050
Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160
+I+ +G G GK+T + K + D +R + ++ + D ++
Sbjct: 4 IILTIGCPGSGKSTWAREF---IAKNPGFYNINR-DDYRQS-----IMAHEERDEYKYTK 54
Query: 161 KKITDPAAIAFNAIN--IAQKKNTDIVIVD-TSGRLSTQSHLMRELKKIKKVIEKKIFEL 217
KK + F+ + + VI+ T+ + K+ +E K+F++
Sbjct: 55 KKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV 114
Query: 218 PYEI 221
P+
Sbjct: 115 PWTE 118
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 33.3 bits (75), Expect = 0.053
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVL 131
++ +G GKTT + KL R
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 33.7 bits (77), Expect = 0.055
Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 2/115 (1%)
Query: 29 IDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSL 88
+++ + + + T + +K I K + + + + ++ +
Sbjct: 74 AEEDFNIDKSEFKRNCGLAYFTGTPGIELIKDEIAICKYQRVDVIFKQILGVYSDMAAN- 132
Query: 89 EKPLIFKKCKPFVIMIV-GVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA 142
+ + K V++ GVG +T A K V +
Sbjct: 133 VATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTD 187
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 33.6 bits (76), Expect = 0.058
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
K I + G G+GKTT + ++F +LL
Sbjct: 8 VKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 45
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 33.5 bits (77), Expect = 0.059
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 19/95 (20%)
Query: 106 GVNGVGKTTTIGKLANYFKKRKKSVLLAA---CDTFRAAAYEQLLILGKYNDVPVISEKK 162
GV+G GK T + KL+ F+ +SV A AA + G++ D+
Sbjct: 7 GVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLAS----- 61
Query: 163 ITDPAAIA-FNAINIAQKKNT--------DIVIVD 188
A+A A++ A +T D+VI+D
Sbjct: 62 --SVYAMATLFALDRAGAVHTIQGLCRGYDVVILD 94
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 33.5 bits (76), Expect = 0.070
Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160
+I+ +G G GK+T + K + D +R + ++ + D ++
Sbjct: 4 IILTIGCPGSGKSTWAREF---IAKNPGFYNINR-DDYRQS-----IMAHEERDEYKYTK 54
Query: 161 KKITDPAAIAFNAIN--IAQKKNTDIVIVD-TSGRLSTQSHLMRELKKIKKVIEKKIFEL 217
KK + F+ + + VI+ T+ + K+ +E K+F++
Sbjct: 55 KKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV 114
Query: 218 PYEI 221
P+
Sbjct: 115 PWTE 118
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 32.9 bits (76), Expect = 0.072
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 106 GVNGVGKTTTIGKLANYFKKRKKSVLL 132
G++ GK+T L Y K V
Sbjct: 17 GLDRSGKSTQSKLLVEYLKNNNVEVKH 43
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 33.0 bits (76), Expect = 0.087
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 106 GVNGVGKTTTIGKLANYFKKRKKSVLL 132
GV+ GK+T KL L
Sbjct: 16 GVDRAGKSTQSRKLVEALCAAGHRAEL 42
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MTBI,
transferase; HET: ATM; 1.85A {Staphylococcus aureus
subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 32.6 bits (75), Expect = 0.10
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL 131
E I G G GKTT I ++ + K ++
Sbjct: 16 ENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 33.2 bits (76), Expect = 0.11
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 26/132 (19%)
Query: 101 VIMIVGVNGVGKTTTIGK----LANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYND 154
+ +I G G GKTTT+ K L + + LAA T +AAA E L +
Sbjct: 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA-PTGKAAARLTESLGKALRQLP 224
Query: 155 VPVISEKKITDPA--------------AIAFNAINIAQKKNTDIVIVDTSGRLSTQ--SH 198
+ +K+I + A + +A N + D+++VD + + S
Sbjct: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGN---PLHLDVLVVDEASMIDLPMMSR 281
Query: 199 LMRELKKIKKVI 210
L+ L +VI
Sbjct: 282 LIDALPDHARVI 293
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 32.7 bits (73), Expect = 0.11
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRAAAYEQL 146
P I G G GK+ T ++ N+ ++ +KS+ A+ D F +QL
Sbjct: 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQL 81
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 32.1 bits (73), Expect = 0.13
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKK 125
+ K F+I I GV GKTT L +
Sbjct: 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPN 47
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
{Sulfolobus tokodaii}
Length = 213
Score = 32.3 bits (74), Expect = 0.15
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 106 GVNGVGKTTTIGKLANYFKKRKKSVL 131
G++G GK++ L ++ + ++ L
Sbjct: 11 GIDGSGKSSQATLLKDWIELKRDVYL 36
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 32.2 bits (73), Expect = 0.16
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 85 LKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
L+ + + + KK IM G GVGKTT Y ++ V++ + D
Sbjct: 12 LRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTD 63
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.18
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 4 NWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLL 42
W R E + K N N+ DK Y + ++D++
Sbjct: 122 EWNQRQSEQVEKNKIN------NRIADKAFYQQPDADII 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.18
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 37 LES--DLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSL-EKPLI 93
L DL+ D+ F +++ +Y F+ +R + ++ ++ + P+
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 94 FKKCKPFVIM-IVGVNGVGKTTTIGKLAN 121
++ F I+ G G + +G L +
Sbjct: 490 WETTTQFKATHIL-DFGPGGASGLGVLTH 517
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 31.8 bits (73), Expect = 0.20
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 106 GVNGVGKTTTIGKLANYFKKRKKSVL 131
G G GKTT I ++ + K ++
Sbjct: 9 GPEGSGKTTVINEVYHRLVKDYDVIM 34
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 31.7 bits (72), Expect = 0.22
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS 129
+PF+I + G GK++ K+ + +
Sbjct: 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVD 52
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 31.7 bits (71), Expect = 0.23
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK 128
KK F +M+VG +G+GK+T I L ++
Sbjct: 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPER 47
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 32.1 bits (72), Expect = 0.24
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 9/104 (8%)
Query: 85 LKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE 144
L+ L K V+++ GV G GKT I N+ ++ ++L R AA E
Sbjct: 147 LRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNF----EEDLILVPG---RQAA-E 198
Query: 145 QLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVD 188
+ + + V ++ + + N + + +D
Sbjct: 199 MIRRRANASGIIVATKDNVRTVDSFLMNYGK-GARCQFKRLFID 241
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 31.8 bits (72), Expect = 0.25
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
+ F + P + G GVGKT+ A ++ K VLL + D
Sbjct: 1 MQFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 31.7 bits (72), Expect = 0.26
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
+ + G GVGKTT L +
Sbjct: 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYA 33
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 31.5 bits (71), Expect = 0.27
Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 41/178 (23%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157
I++VG G GK+ T + +K S A T +
Sbjct: 28 SQLRIVLVGKTGAGKSATGNSILG--RKVFHSGTAAKSITKKCEKRS------------- 72
Query: 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFEL 217
+ K T++V+VDT G T+ K+I + I
Sbjct: 73 -------------------SSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTS-PG 112
Query: 218 PYEIFLIIDGN----TGQNTLSQIKEF--SKILRITGLIITKLDGTTKGGILAAIAKK 269
P+ + L++ +I + + LI T+ D + + +
Sbjct: 113 PHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREA 170
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 31.2 bits (70), Expect = 0.28
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLA 120
P I+++GV+G GK++ +A
Sbjct: 17 FPGSIVVMGVSGSGKSSVGEAIA 39
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 31.4 bits (72), Expect = 0.31
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA 133
++ ++G NG GK+T + L + + + +
Sbjct: 33 ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY 65
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases,
center for structural genomics of infectious DISE
ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 31.1 bits (71), Expect = 0.32
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 106 GVNGVGKTTTIGKLANYFKKRK-KSVLL 132
G+ G GK+T I + ++ +
Sbjct: 34 GLEGAGKSTAIQVVVETLQQNGIDHITR 61
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 31.0 bits (71), Expect = 0.32
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 106 GVNGVGKTTTIGKLANYFKKRK-KSVLL 132
G+ G GKTT + ++ + ++
Sbjct: 10 GLEGAGKTTARNVVVETLEQLGIRDMVF 37
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 31.4 bits (71), Expect = 0.36
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
F K K + I G GVGKTT A + + K L+ + D
Sbjct: 9 FNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 30.8 bits (69), Expect = 0.37
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 98 KPFVIMIVGVNGVGKTTTIGK-LANYFKKRKKSVLLAACDTFRAAA 142
++++GV+G GK TTI +A + + A D F +
Sbjct: 28 PTRHVVVMGVSGSGK-TTIAHGVA-----DETGLEFAEADAFHSPE 67
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan
synthesis, peptidoglycan biosynthesis; HET: 003 DGL;
1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Length = 255
Score = 31.0 bits (71), Expect = 0.37
Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177
+ ++FK + +L+ AC+T A A E + KY+ +P++ + +P+ +A
Sbjct: 53 EALDFFKPHEIELLIVACNTASALALE---EMQKYSKIPIVG---VIEPSILA--IKRQV 104
Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELP 218
+ KN I+++ T + + ++ +K+ I L
Sbjct: 105 EDKNAPILVLGTKATIQSNAY----DNALKQQGYLNISHLA 141
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic
protein structure initiative, PSI, natPro; HET: MSE SAH
GLU; 1.55A {Micromonospora echinospora}
Length = 257
Score = 31.1 bits (69), Expect = 0.38
Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 11/200 (5%)
Query: 55 LNELKKIIYSKKLFNTEQVRNV-LHNLLVNLLKSLEKPLIFKKCK--PFVIMIVGVNGVG 111
L K++ + + E V N+ L + L ++++ P VIM GV
Sbjct: 23 TQRLTKLLTNSPIPTEELVNNLPLFLRRHQMTDLLSMDALYRQVLDVPGVIMEFGVRFGR 82
Query: 112 KTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAF 171
T L ++ + DTF NDV + A+
Sbjct: 83 HLGTFAALRGVYEPYNPLRRIVGFDTFTGFP--------DVNDVDRVGPTAYQGRFAVPG 134
Query: 172 NAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQ 231
++ D G ++ +S L+ + D + +
Sbjct: 135 GYPAYLKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYE 194
Query: 232 NTLSQIKEFSKILRITGLII 251
T + ++ L ++
Sbjct: 195 PTKAVLEAIRPYLTKGSIVA 214
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 30.7 bits (70), Expect = 0.39
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL 131
+ +I+ G++ GKTT + L
Sbjct: 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 30.8 bits (69), Expect = 0.40
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK 127
+ +PF ++I G G GKTT + Y
Sbjct: 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDIC 48
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 30.9 bits (70), Expect = 0.41
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK 125
L F+ +PF+I + G GK+T K+ +
Sbjct: 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 31.3 bits (70), Expect = 0.41
Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 25/211 (11%)
Query: 33 LYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPL 92
+ E E+ L +V + N +I S E V + + L +L +E P
Sbjct: 20 IKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPF 79
Query: 93 IFKKCKPFV----------------IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
+F + ++ G + VG + + ++ VL++
Sbjct: 80 VFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQ 139
Query: 137 TFRAAAYEQLLILGKYNDVP-----VISEKKITDPAAIAF----NAINIAQKKNTDIVIV 187
T A LL+ + V ++ + DP F N I + KK+ +
Sbjct: 140 TEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPE 199
Query: 188 DTSGRLSTQSHLMRELKKIKKVIEKKIFELP 218
T + + ++E+ + + + I+ P
Sbjct: 200 LTETKRKANTRSLKEMALLLRGGSQLIWIAP 230
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 30.7 bits (70), Expect = 0.43
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKR 126
KPFVI I G GKTT LA +R
Sbjct: 5 KPFVIGIAGGTASGKTTLAQALARTLGER 33
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 30.7 bits (70), Expect = 0.45
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 106 GVNGVGKTTTIGKLANYFKKRKK 128
G++G GKTT LA Y +
Sbjct: 28 GIDGSGKTTQSHLLAEYLSEIYG 50
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 31.0 bits (70), Expect = 0.45
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
I + G GVGKTTT LA K ++SVLL + D
Sbjct: 18 WIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.9 bits (69), Expect = 0.46
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTI 116
F +M+VG +G+GK+T I
Sbjct: 4 GSGFEFTLMVVGESGLGKSTLI 25
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.8 bits (69), Expect = 0.48
Identities = 19/147 (12%), Positives = 38/147 (25%), Gaps = 8/147 (5%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157
+ + G G GK++ I L + A +V
Sbjct: 68 SVLNVAVTGETGSGKSSFINTL---RGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 124
Query: 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQ-SHLMRELKKIKK----VIEK 212
I + + D I+ ++ R + + + +KK V K
Sbjct: 125 WDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTK 184
Query: 213 KIFELPYEIFLIIDGNTGQNTLSQIKE 239
++ E + L I+
Sbjct: 185 VDSDITNEADGEPQTFDKEKVLQDIRL 211
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 30.3 bits (69), Expect = 0.53
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 106 GVNGVGKTTTIGKLANYFKKRKKSV 130
G++ GKTT L + K +
Sbjct: 12 GLDRTGKTTQCNILYKKLQPNCKLL 36
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 30.2 bits (69), Expect = 0.58
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 81 LVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
+ + + L K ++ +G++ GKTT + L N
Sbjct: 6 IFGWFRDVLASLGLWN-KHGKLLFLGLDNAGKTTLLHMLKN 45
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 30.4 bits (69), Expect = 0.60
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 64 SKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
S Q+ +L + + K + +I+G+ VGK+T I +LA
Sbjct: 87 SVNGQGLNQIVPASKEILQEKFDRMRAKGV--KPRAIRALIIGIPNVGKSTLINRLAK 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 30.5 bits (68), Expect = 0.65
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 84 LLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK 128
L L L ++G G GKT T+ KL +K +
Sbjct: 29 LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT 73
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 30.5 bits (69), Expect = 0.67
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
I + G GVGKTTT LA K + SVLL
Sbjct: 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLL 52
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 30.4 bits (69), Expect = 0.70
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 101 VIMIVGVN-GVGKTTTIGKLANYFKKRKKSVLLAACD 136
++MI G GKT LA + + VL D
Sbjct: 106 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 142
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 30.3 bits (69), Expect = 0.71
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 101 VIMIVGVN-GVGKTTTIGKLANYFKKRKKSVLLAACD 136
V+M+ GV+ +G T LA + K VLL CD
Sbjct: 94 VLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCD 130
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein
structure, midwest center for S genomics, MCSG, PSI-2;
HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Length = 218
Score = 30.0 bits (68), Expect = 0.71
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 228 NTGQNTLSQIKEFSKILRITGLIITKLDGTTKGG---ILAAIAKKYSIPLYFIGIG 280
N + + + + + ++IT DG G A A + I + +G+G
Sbjct: 99 NLATRSFTPQEGVGRAI----IVIT--DGENHEGGAVEAAKAAAEKGIQVSVLGVG 148
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation,
transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A*
2wvj_A* 2j87_A*
Length = 195
Score = 30.0 bits (68), Expect = 0.72
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 111 GKTTTIGKLANYFKKRKKSVLL--AACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAA 168
GK+T + + F+ + L+ A DT +Y+ + + T A
Sbjct: 32 GKSTELMRRVRRFQIAQYKCLVIKYAKDT-------------RYSSS-FCTHDRNTMEAL 77
Query: 169 IAFNAINIAQK-KNTDIVIVD 188
A ++AQ+ ++ +D
Sbjct: 78 PACLLRDVAQEALGVAVIGID 98
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 30.6 bits (69), Expect = 0.72
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 13/119 (10%)
Query: 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS----GRLSTQSHLMRELK 204
+ YN V+ E TDPA+IA + + + + + G +
Sbjct: 110 VPNYNLF-VMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDSNAPIH 168
Query: 205 KIKKVIEKKIFELPYEIFLIIDGN-----TGQNTLSQIKEFSKILRITGLIITKLDGTT 258
++ I + + YE G E + L+ G + +L+ +
Sbjct: 169 DLQDEIPDRAWSSGYEWITEYAGKTVWFVASVK---MGNEIAMCLQRAGKKVIQLNRKS 224
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 29.9 bits (68), Expect = 0.80
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 65 KKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVN-GVGKTTTIGKLANYF 123
+ + ++ V+ + +L+ L + L K + VI+ GVGK+ A
Sbjct: 3 QYYYTKKEWGVVMEKEELKILEELRRIL-SNKNEAIVILNNYFKGGVGKSKLSTMFAYLT 61
Query: 124 KKRKKSVLLAACD 136
K VL+ D
Sbjct: 62 DKLNLKVLMIDKD 74
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 29.6 bits (66), Expect = 0.82
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLA 120
+ +++GV+G GK+ ++A
Sbjct: 7 DHHIYVLMGVSGSGKSAVASEVA 29
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 29.6 bits (67), Expect = 0.83
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 81 LVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
+ + S+ + L K K ++ +G++ GKTT + L +
Sbjct: 8 IYSGFSSVLQFLGLYK-KTGKLVFLGLDNAGKTTLLHMLKD 47
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 30.3 bits (68), Expect = 0.84
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 21/111 (18%)
Query: 23 LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKK--IIYSKKLFNTEQVRNVLHNL 80
L+ NK +DL+ V + + + K + + +F +
Sbjct: 101 LVGNK-----------ADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLI----SAAKGQ 145
Query: 81 LVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL 131
+ L I + +VG VGK+T I ++ F ++V+
Sbjct: 146 GIAELADA----IEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVI 192
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 29.5 bits (66), Expect = 0.85
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160
VI+I G+ G GK+ A K+R V++ + D R + + D
Sbjct: 3 VILITGMPGSGKSE----FAKLLKERGAKVIVMS-DVVRKRYSIEAKPGERLMDF-AKRL 56
Query: 161 KKITDPAAIAFNAINIAQKKNTDIVIVD 188
++I +A + N D+V+ D
Sbjct: 57 REIYGDGVVARLCVEELGTSNHDLVVFD 84
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 29.8 bits (68), Expect = 0.87
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 109 GVGKTTTIGKLANYFKKRKKSVLLAACD 136
GVGKTTT LA Y + K VLL D
Sbjct: 17 GVGKTTTAINLAAYLARLGKRVLLVDLD 44
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Length = 361
Score = 30.2 bits (68), Expect = 0.91
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 109 GVGKTTTIGKLANYFKKRKKSVLLAACD 136
GVGKTT +A+YF + K VL CD
Sbjct: 12 GVGKTTLSTNVAHYFALQGKRVLYVDCD 39
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 29.3 bits (66), Expect = 1.0
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
+ F I+ G GKTT + + + + +K ++
Sbjct: 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMV 47
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 29.3 bits (65), Expect = 1.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSV 130
+ + G GVGKTT I K + K V
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPV 32
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 29.3 bits (65), Expect = 1.1
Identities = 11/95 (11%), Positives = 26/95 (27%), Gaps = 6/95 (6%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157
+I++ G + GK+ + L + + + D+ A ++ +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAF---GVDSLIEAMPLKMQSAEGGIEFDA 58
Query: 158 ISEKKITDPAAIAFNAINIAQKKNTD---IVIVDT 189
I A +I+D
Sbjct: 59 DGGVSIGPEFRALEGAWAEGVVAMARAGARIIIDD 93
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 29.3 bits (65), Expect = 1.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLA 120
K I+I G G GKT+ +A
Sbjct: 9 KGINILITGTPGTGKTSMAEMIA 31
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 29.4 bits (65), Expect = 1.3
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRK 127
+ I I G GK+T + L + +
Sbjct: 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWE 52
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 29.5 bits (66), Expect = 1.3
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
++ +G +GV +T A + K VLLA
Sbjct: 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLA 39
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 29.1 bits (66), Expect = 1.3
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 106 GVNGVGKTTTIGKLANYFKKRKKS 129
G++G GKTT + + ++R
Sbjct: 32 GIDGAGKTTHLQWFCDRLQERLGP 55
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 28.9 bits (65), Expect = 1.3
Identities = 4/19 (21%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 101 VIMIVGVNGVGKTTTIGKL 119
+I++ G + K +T+
Sbjct: 3 LIILEGPDCCFK-STVAAK 20
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 29.1 bits (66), Expect = 1.6
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR 126
K +G G GKT I KL + K +
Sbjct: 33 LNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.3 bits (65), Expect = 1.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTIGKLAN 121
+ F I+ VG G+GK+T + L N
Sbjct: 38 SQGFCFNILCVGETGLGKSTLMDTLFN 64
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 29.1 bits (65), Expect = 1.7
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV 130
I + + + +VG VGK+T I ++ + +
Sbjct: 155 AINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVI 193
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.7
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 10 KESLSKTACNLK--------SLIVNKKID 30
K++L K +LK +L + ++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 26.8 bits (58), Expect = 6.7
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 14/37 (37%)
Query: 251 ITKLDGTTKGGILAAIAKKY---SIPLYFIGIGEKIE 284
+ KL + L K Y S P + I +E
Sbjct: 22 LKKLQAS-----L----KLYADDSAPA--LAIKATME 47
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 28.9 bits (64), Expect = 1.7
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRK 127
P + I G VGK+T + L + +
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 29.4 bits (66), Expect = 1.8
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 74 RNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTT 114
R L N + L L+ +P + I G+ G GK+
Sbjct: 129 RKKLVNAIQQKLSKLKG-------EPGWVTIHGMAGCGKSV 162
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 28.7 bits (65), Expect = 2.0
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR 126
++ + I+G G GKT I +
Sbjct: 25 LRESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid,
borellia burgdorferi, plasmid partition protein, iodide;
2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 28.7 bits (65), Expect = 2.0
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 78 HNLLVNLLKSLEKPLIFKKCKPFVIMIVGVN---GVGKTTTIGKLANYFKKRKKSVLLAA 134
H+ + L + P KP +I I + GVGK+T+ LA K K VLL
Sbjct: 6 HHHMGTLEAQTQGPGSMDNKKPKIITIA--SIKGGVGKSTSAIILATLLSKNNK-VLLID 62
Query: 135 CDT 137
DT
Sbjct: 63 MDT 65
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 28.8 bits (65), Expect = 2.0
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 101 VIMIVGVN-GVGKTTTIGKLANYFKKRKKSVLLAACD 136
I+I G GK+T LA + + L+ D
Sbjct: 84 SIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.0 bits (64), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 95 KKCKPFVIMIVGVNGVGKTTTIGKLAN 121
K+ F +M+VG +G+GK+T I L
Sbjct: 27 KRGFEFTLMVVGESGLGKSTLINSLFL 53
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A
{Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Length = 184
Score = 28.3 bits (64), Expect = 2.4
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 17/89 (19%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLL--AACDTFRAAAYEQLLILGKYNDVPVISEK 161
I G GKTT + +K KK V + D+ +Y+ ++S
Sbjct: 8 ITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDS-------------RYHSTMIVSHS 54
Query: 162 KITDPAAIAFNAINIAQ--KKNTDIVIVD 188
A + + + +++T V +D
Sbjct: 55 GNGVEAHVIERPEEMRKYIEEDTRGVFID 83
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 28.8 bits (65), Expect = 2.4
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 62 IYSKKL-FNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPF-----VIMIVGVNGVGKTTT 115
I K FN + N+ L + + P V+ IVG NG GKTT
Sbjct: 74 ICVHKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTA 133
Query: 116 I 116
+
Sbjct: 134 V 134
Score = 28.4 bits (64), Expect = 3.2
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 101 VIMIVGVNGVGKTTTIGKLA 120
VI IVG NG+GKTT + LA
Sbjct: 384 VIGIVGPNGIGKTTFVKMLA 403
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 28.7 bits (63), Expect = 2.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 97 CKPFVIMIVGVNGVGKTTTIGKL 119
V + G NG GK+TT+
Sbjct: 27 FDELVTTLSGGNGAGKSTTMAGF 49
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 28.8 bits (64), Expect = 2.5
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 85 LKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK 124
L + ++ + C ++M VG+ GKT KL Y
Sbjct: 26 LHASQRGVCMTNCPTLIVM-VGLPARGKTYISKKLTRYLN 64
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium,
protein STRU initiative, PSI, structural genomics, DNA
synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum}
SCOP: c.37.1.24 g.39.1.14
Length = 191
Score = 28.3 bits (64), Expect = 2.5
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 17/82 (20%)
Query: 111 GKTTTIGKLANYFKKRKKSVLL--AACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAA 168
GK+ + + K K+ + + D +Y+ V+S + A
Sbjct: 20 GKSEELIRRIRRAKIAKQKIQVFKPEIDN-------------RYSKEDVVSHMGEKEQAV 66
Query: 169 IAFNAINIAQ--KKNTDIVIVD 188
N+ I + +++T+++ +D
Sbjct: 67 AIKNSREILKYFEEDTEVIAID 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 28.5 bits (63), Expect = 2.8
Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 23/204 (11%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK 161
+++G+ VGK++ L F + +L+ + + + L K + +
Sbjct: 34 TLLLGIRRVGKSS----LLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPFQ 89
Query: 162 KITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIF---ELP 218
K I+ N + + R + + REL + + + + I E
Sbjct: 90 KFQSKFKISLN-----------LKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQ 138
Query: 219 YEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIG 278
Y G+ L+ L +I+T + L Y PLY
Sbjct: 139 Y--LRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKIT--DYESPLYGRI 194
Query: 279 IGE-KIEDLQIFNAVDFVNALLNQ 301
GE ++ +V+F+ +
Sbjct: 195 AGEVLVKPFDKDTSVEFLKRGFRE 218
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 28.4 bits (64), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
VI IVG NG+GKTT + LA + + +
Sbjct: 314 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW 345
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 28.6 bits (63), Expect = 3.3
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 16/77 (20%)
Query: 49 ETTQFLLNELKKIIYSKKLFNTEQV--RNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVG 106
E + + + LK++ Y KL E+ H+ +LE K ++++ G
Sbjct: 23 EAIRTVTSSLKEL-YRTKLLPLEEHYRFGSFHS------PALEDADFDGK---PMVLVAG 72
Query: 107 VNGVGKTTTIGKLANYF 123
GKT+ I Y
Sbjct: 73 QYSTGKTSFI----QYL 85
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.4 bits (63), Expect = 3.4
Identities = 32/246 (13%), Positives = 66/246 (26%), Gaps = 47/246 (19%)
Query: 65 KKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK 124
+F E++ + + + + KK + + GK
Sbjct: 18 SHMFKREEIIEMANKDFEKAWIETKDLIKAKK--------INESYPRIKPVFGKTHPVND 69
Query: 125 KRKKSVLLAACDTFRAAAYEQL---LILGKYN-DVPVISEKKITDPAAIAFNAINIAQKK 180
+ + +E+ +I+ + + E +
Sbjct: 70 TIEN-----LRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVG 124
Query: 181 NTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELP---YEIF--LIIDGNTG----Q 231
+D I S L+KI +K + EI L I G +
Sbjct: 125 LSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILE 184
Query: 232 NTLSQIKEFSKI-----LRITGLIITKLDGTTKGGI--LAAIAKKYSIPLYFIGIG---- 280
+ + K+ + + LR + T G ++ + K +P I
Sbjct: 185 DVFPEFKDLTAVSSKLTLR------SH---MTSGWFLTVSDLMNKKPLPFKLFSIDRCFR 235
Query: 281 -EKIED 285
E+ ED
Sbjct: 236 REQKED 241
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 27.9 bits (63), Expect = 3.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
+ G+NG GKTT + L Y +V L
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNL 80
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 27.6 bits (62), Expect = 3.5
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 84 LLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKL 119
LL L K + I+++G++ GKTT + +L
Sbjct: 2 LLSILRKLKSAPD-QEVRILLLGLDNAGKTTLLKQL 36
>3uhf_A Glutamate racemase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich
fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni}
PDB: 3uho_A* 3uhp_A
Length = 274
Score = 27.9 bits (63), Expect = 3.5
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177
+ ++F++ + +L+ AC+T A A + L PV + D A I
Sbjct: 77 EALDFFEQFQIDMLIIACNTASAYALDALR---AKAHFPVYG---VIDAGVEA--TIKAL 128
Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELP 218
KN +I+++ T + ++ + K++ I L
Sbjct: 129 HDKNKEILVIATKATIKSEEY----QKRLLSQGYTNINALA 165
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 28.5 bits (64), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVL 131
+++++G NG GKTT I LA K + +
Sbjct: 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDI 410
Score = 26.9 bits (60), Expect = 9.7
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 101 VIMIVGVNGVGKTTTI 116
V+ +VG NG+GK+T +
Sbjct: 105 VLGLVGTNGIGKSTAL 120
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 28.4 bits (63), Expect = 3.7
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 5/116 (4%)
Query: 4 NWITRLKESLSKTACNLKSLI--VNKKIDKNLYNELES--DLLKADVGFETTQFLLNELK 59
I + A L LI N +L + LE D + + +
Sbjct: 52 ERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFS 111
Query: 60 KIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLI-FKKCKPFVIMIVGVNGVGKTT 114
+ + +KL + + + + + K L F + + G G GK+
Sbjct: 112 RQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSV 167
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 27.7 bits (62), Expect = 3.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVL 131
+ + G GVGKT + +AN KR S L
Sbjct: 57 LYLHGSFGVGKTYLLAAIANELAKRNVSSL 86
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 28.2 bits (62), Expect = 4.0
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS 129
F + +G+ G GKT + N ++ KK
Sbjct: 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKE 75
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.7 bits (61), Expect = 4.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKR 126
I+I G GVGKTT + K+ KR
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR 27
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 28.1 bits (63), Expect = 4.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
+I I+G NG+GKTT L + SV
Sbjct: 296 IIGILGPNGIGKTTFARILVGEITADEGSVTP 327
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 27.8 bits (61), Expect = 4.3
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
I + GV G+GK+TT +A+ ++
Sbjct: 6 TIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 40
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'-
(2'deoxythymidil))tetraphosphate, transferase; HET: 4TA;
2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Length = 234
Score = 27.8 bits (62), Expect = 4.4
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 111 GKTTTIGKLANYFKKRKKSVLL--AACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAA 168
GK+T + + F+ + L+ A DT +Y+ + + T A
Sbjct: 31 GKSTELMRRVRRFQIAQYKCLVIKYAKDT-------------RYSSS-FCTHDRNTMEAL 76
Query: 169 IAFNAINIAQK-KNTDIVIVD 188
A ++AQ+ ++ +D
Sbjct: 77 PACLLRDVAQEALGVAVIGID 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 27.2 bits (61), Expect = 4.9
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 84 LLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKL 119
LL L+K + +K + ++++G++ GKTT + K
Sbjct: 5 LLTILKK--MKQKERELRLLMLGLDNAGKTTILKKF 38
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 27.8 bits (62), Expect = 5.0
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 22/57 (38%)
Query: 98 KPFVIMIVGVN---GVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGK 151
+ +VI I N GV KT + +V LA A+ LL+
Sbjct: 107 EAYVIFIS--NLKGGVSKTVS-------------TVSLAHA----MRAHPHLLMEDL 144
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 27.4 bits (62), Expect = 5.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE 144
++G NG GKTTT+ +A + +K ++ D A+
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural
protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.00A {Pseudomonas
aeruginosa PAO1}
Length = 500
Score = 27.6 bits (62), Expect = 5.4
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 58 LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
+ + + + + L LL+ + L + P +I+I G+ G GK T+
Sbjct: 4 FESAEVGHSI-DKDTYEKAVIELREALLE-AQFELKQQARFPVIILINGIEGAGKGETVK 61
Query: 118 KL 119
L
Sbjct: 62 LL 63
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 27.5 bits (61), Expect = 5.8
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFK 124
M+ G G+GKTT +A
Sbjct: 80 AMLYGPPGIGKTTAAHLVAQELG 102
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding,
deoxyribonucleoside kinase, DNA synthesis, phosphate
accept nucleotide-binding; HET: THM; 2.7A {Bacillus
anthracis} PDB: 2ja1_A*
Length = 214
Score = 27.2 bits (61), Expect = 5.9
Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 17/82 (20%)
Query: 111 GKTTTIGKLANYFKKRKKSVLL--AACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAA 168
GK+ + + + K+ ++ D +Y++ V+S + A
Sbjct: 40 GKSEELIRRVRRTQFAKQHAIVFKPCIDN-------------RYSEEDVVSHNGLKVKAV 86
Query: 169 IAFNAINIAQ--KKNTDIVIVD 188
+ +I + + D++ +D
Sbjct: 87 PVSASKDIFKHITEEMDVIAID 108
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 27.7 bits (62), Expect = 6.0
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 16/77 (20%)
Query: 204 KKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITG--LIITKLDGTTKGG 261
K +K I+ + E E + + + ++ G L+I T G
Sbjct: 348 MKFQKEIDAMLAEAGIEGSKVKVEGDFF-------DVHQWIKNEGVDLLI----SNTYG- 395
Query: 262 ILAAIAKKYSIPLYFIG 278
IA++ +IP G
Sbjct: 396 --KFIAREENIPFVRFG 410
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis,
nucleotide-B transferase; HET: MSE; 2.01A
{Staphylococcus aureus}
Length = 219
Score = 27.3 bits (61), Expect = 6.2
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 17/82 (20%)
Query: 111 GKTTTIGKLANYFKKRKKSVLL--AACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAA 168
GK+ + + K+ V++ A D +Y+ V+S A
Sbjct: 40 GKSEELIRRLRRGIYAKQKVVVFKPAIDD-------------RYHKEKVVSHNGNAIEAI 86
Query: 169 IAFNAINIAQ--KKNTDIVIVD 188
A I N D++ +D
Sbjct: 87 NISKASEIMTHDLTNVDVIGID 108
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 27.6 bits (61), Expect = 6.4
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 18/115 (15%)
Query: 27 KKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLK 86
K++ L +L V + L + I +L N+ Q V H
Sbjct: 321 AIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQL-NSSQSNAVSH-------- 371
Query: 87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA 141
L++PL +I G G GKT T + + K K +L + A
Sbjct: 372 VLQRPLS---------LIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAV 417
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.2 bits (60), Expect = 6.5
Identities = 24/189 (12%), Positives = 65/189 (34%), Gaps = 12/189 (6%)
Query: 101 VIMIVGVNGVGKTT-TIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS 159
+++ G G GKTT + ++ + + + ++ G ++
Sbjct: 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFG-WDFEKYEK 90
Query: 160 EKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPY 219
E KI ++ +++K + L +++ + + VI+ +P
Sbjct: 91 EGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDS----IPS 146
Query: 220 EIFLIIDGNTGQNTLSQIKEFSKILRITGLIIT-----KLDGTTKGGILAAIAKKYSIPL 274
+ + + L ++ + +T ++ T + ++ GI IA+ I L
Sbjct: 147 IALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARG-VIVL 205
Query: 275 YFIGIGEKI 283
++
Sbjct: 206 DLQEKNIEL 214
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 26.8 bits (60), Expect = 6.7
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 86 KSLEKPLIFKKCKPFVIMIVGVNGVGKT 113
S + L F+ + I+G G GK+
Sbjct: 8 SSGRENLYFQGPLEVNLAILGRRGAGKS 35
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 27.2 bits (60), Expect = 7.0
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLL 132
I + G GVGKTTT +A + + LL
Sbjct: 20 WIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLL 53
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH,
isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces
cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A*
1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
Length = 533
Score = 27.5 bits (60), Expect = 7.1
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Query: 102 IMIVGVNGVGKTTTI-GKLAN------YFKKRKKSVLLAACDTFRAAAYEQLLILGKYND 154
IM++G+ G +T + LAN K+ K T + + G
Sbjct: 68 IMLIGLGGNNGSTLVASVLANKHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVY 127
Query: 155 VPVISEKKITDPAAIAF 171
P S + P
Sbjct: 128 APFNSLLPMVSPNDFVV 144
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 27.1 bits (60), Expect = 7.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
V + G G+GK+TT L+ F K VL CD
Sbjct: 43 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 27.0 bits (59), Expect = 7.7
Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 10/130 (7%)
Query: 15 KTAC--NLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQ 72
K+ L +I K + ++ L + K + K+ +
Sbjct: 37 KSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLK----PMVNLVDSLKTLQPNKVAEMIE 92
Query: 73 VRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
+ + + + ++ K +V G L
Sbjct: 93 NQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAI----RIAAVDNPVNVNKL 148
Query: 133 AACDTFRAAA 142
A A
Sbjct: 149 AQDSINIAQI 158
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium
pasteurianum} SCOP: c.37.1.10
Length = 269
Score = 26.9 bits (60), Expect = 8.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
+ I G G+GK+TT L + K++++ CD
Sbjct: 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A*
1ion_A*
Length = 237
Score = 26.7 bits (60), Expect = 8.5
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 109 GVGKTTTIGKLANYFKKRKKSVLL 132
G GKTT L+ R + VL
Sbjct: 13 GTGKTTVTANLSVALGDRGRKVLA 36
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 26.5 bits (59), Expect = 8.5
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 79 NLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
N+ ++ L + K I+I+G++G GKTT + +L
Sbjct: 3 NIFSSMFDKL-----WGSNKELRILILGLDGAGKTTILYRLQI 40
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.1 bits (59), Expect = 8.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKK 128
F +M+VG +G+GK+T I L ++
Sbjct: 37 EFTLMVVGESGLGKSTLINSLFLTDLYPER 66
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 27.2 bits (61), Expect = 8.7
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL-AACDTFRAAA 142
VI+I G G+ + +L K V+L + + AA
Sbjct: 349 VILIAG--GLDRGNEFDELIPDITGLKHMVVLGESASRVKRAA 389
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane
protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a
1sht_X 1t6b_Y*
Length = 182
Score = 26.6 bits (59), Expect = 8.7
Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 15/103 (14%)
Query: 194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTG-----QNTLSQIKEFSKILRITG 248
S+Q+ ++ L + I K + +L + G T + QI++ + L+ +
Sbjct: 50 SSQATIILPLTGDRGKISKGLEDLKR---VSPVGETYIHEGLKLANEQIQK-AGGLKTSS 105
Query: 249 LIITKLDGTTKGGIL------AAIAKKYSIPLYFIGIGEKIED 285
+II DG G + A I++ +Y +G+ + +
Sbjct: 106 IIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQA 148
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 27.0 bits (60), Expect = 9.2
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 109 GVGKTTTIGKLANYFKKRKKSVLL 132
GVGKT+ ++ + + K +
Sbjct: 81 GVGKTSFGLAMSLFLALKGKRCYV 104
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA
binding, cell cycle; 2.79A {Caenorhabditis elegans}
Length = 376
Score = 26.8 bits (58), Expect = 9.5
Identities = 23/190 (12%), Positives = 57/190 (30%), Gaps = 4/190 (2%)
Query: 57 ELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTI 116
L K+ +N + N+ ++ + + EK I + + +
Sbjct: 111 ALSKMKMPLHELQAHVRQNPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAK- 169
Query: 117 GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI 176
+L + + F + Y +LG + ++ + I++ N
Sbjct: 170 -RLNEILFRESPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNN 228
Query: 177 AQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236
+ +I + G + R + + + F + + +N
Sbjct: 229 RNETRGNIYEIKVVGNIDNVLKARRYIMDLLPISM--CFNIKNTDMAEPSRVSDRNIHMI 286
Query: 237 IKEFSKILRI 246
I E IL++
Sbjct: 287 IDESGIILKM 296
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning;
2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 26.7 bits (58), Expect = 9.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 99 PFVIMIVGVNGVGKTTTI 116
V + G NG GK+TT+
Sbjct: 27 ELVTTLSGGNGAGKSTTM 44
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 26.5 bits (58), Expect = 10.0
Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 21/162 (12%)
Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDVPVI 158
I++ G GVGKTT +LA+ + +V A + Y+ IL + V +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDEL 73
Query: 159 SEKKITDPAAIAFNAINIAQKKNTDIVIV-DTS-----GRLSTQSHLMRELKKIKKVIEK 212
+ + ++ + ++ IV V T RL T+ + KK+ I+
Sbjct: 74 DNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGY---NEKKLTDNIQC 130
Query: 213 KIFELPYE---------IFLIIDGNTGQNTLSQIKEFSKILR 245
+IF++ YE I + N + + + + K +
Sbjct: 131 EIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIE 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.376
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,498,231
Number of extensions: 280867
Number of successful extensions: 1294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1235
Number of HSP's successfully gapped: 225
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)